Query psy2392
Match_columns 1165
No_of_seqs 645 out of 6921
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 23:51:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2392.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2392hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g41_A Heat shock protein HSLU 100.0 2.2E-64 7.5E-69 593.4 21.5 435 171-610 3-443 (444)
2 1g41_A Heat shock protein HSLU 100.0 1.6E-63 5.6E-68 586.0 20.3 389 769-1163 3-395 (444)
3 1r6b_X CLPA protein; AAA+, N-t 100.0 3.1E-41 1E-45 426.0 36.7 348 626-1156 313-701 (758)
4 3pxi_A Negative regulator of g 100.0 3.9E-40 1.3E-44 415.9 30.8 361 626-1158 289-712 (758)
5 1r6b_X CLPA protein; AAA+, N-t 100.0 5.3E-40 1.8E-44 414.6 32.0 380 9-576 292-714 (758)
6 3pxi_A Negative regulator of g 100.0 1E-39 3.5E-44 412.1 24.3 387 16-579 275-726 (758)
7 1qvr_A CLPB protein; coiled co 100.0 5E-39 1.7E-43 410.5 25.9 368 626-1152 297-801 (854)
8 3cf2_A TER ATPase, transitiona 100.0 1.2E-39 4.2E-44 406.9 15.0 450 183-1114 204-658 (806)
9 1qvr_A CLPB protein; coiled co 100.0 4E-38 1.4E-42 402.1 24.2 388 16-578 283-820 (854)
10 3hws_A ATP-dependent CLP prote 100.0 8.6E-32 3E-36 311.3 19.1 290 172-602 4-351 (363)
11 1ofh_A ATP-dependent HSL prote 100.0 3.3E-31 1.1E-35 297.0 19.9 303 172-610 4-309 (310)
12 1ypw_A Transitional endoplasmi 100.0 5.4E-29 1.8E-33 315.3 17.3 180 780-1114 476-658 (806)
13 1um8_A ATP-dependent CLP prote 100.0 1.3E-27 4.4E-32 277.5 23.0 291 172-603 10-368 (376)
14 3hws_A ATP-dependent CLP prote 99.9 7.3E-28 2.5E-32 278.4 16.1 251 770-1156 4-308 (363)
15 1ofh_A ATP-dependent HSL prote 99.9 1.1E-27 3.9E-32 268.3 14.5 249 769-1153 3-251 (310)
16 1um8_A ATP-dependent CLP prote 99.9 2.1E-24 7.3E-29 250.4 18.3 251 770-1156 10-325 (376)
17 4fcw_A Chaperone protein CLPB; 99.9 3.6E-22 1.2E-26 224.3 20.0 248 171-577 5-278 (311)
18 4b4t_J 26S protease regulatory 99.9 2.6E-22 9E-27 232.9 14.8 239 182-599 147-388 (405)
19 3cf2_A TER ATPase, transitiona 99.9 1.9E-22 6.4E-27 252.3 10.3 312 27-516 337-658 (806)
20 4b4t_J 26S protease regulatory 99.9 8.1E-22 2.8E-26 228.8 13.6 180 780-1114 147-329 (405)
21 4b4t_I 26S protease regulatory 99.9 2.4E-21 8.2E-26 225.5 14.8 238 182-598 181-421 (437)
22 4b4t_M 26S protease regulatory 99.8 5.1E-21 1.8E-25 225.0 16.2 217 182-574 180-399 (434)
23 4b4t_L 26S protease subunit RP 99.8 3.5E-21 1.2E-25 226.6 14.7 180 182-516 180-362 (437)
24 4b4t_H 26S protease regulatory 99.8 7.3E-21 2.5E-25 223.3 15.3 216 182-573 208-426 (467)
25 4b4t_K 26S protease regulatory 99.8 1.8E-20 6.2E-25 220.1 16.4 217 181-573 170-390 (428)
26 4b4t_I 26S protease regulatory 99.8 9.4E-21 3.2E-25 220.5 13.5 180 780-1114 181-363 (437)
27 4b4t_M 26S protease regulatory 99.8 1.3E-20 4.4E-25 221.6 13.3 180 780-1114 180-362 (434)
28 4b4t_H 26S protease regulatory 99.8 2.1E-20 7.2E-25 219.4 13.4 180 780-1114 208-390 (467)
29 4fcw_A Chaperone protein CLPB; 99.8 1E-19 3.4E-24 204.5 17.6 231 768-1152 4-260 (311)
30 4b4t_L 26S protease subunit RP 99.8 2.3E-20 7.7E-25 219.7 11.5 180 780-1114 180-362 (437)
31 4b4t_K 26S protease regulatory 99.8 6.3E-20 2.1E-24 215.6 15.1 181 779-1114 170-354 (428)
32 3m6a_A ATP-dependent protease 99.8 2.2E-19 7.6E-24 218.3 17.1 284 155-604 53-345 (543)
33 1xwi_A SKD1 protein; VPS4B, AA 99.8 3.2E-18 1.1E-22 195.0 21.1 217 182-575 11-228 (322)
34 1xwi_A SKD1 protein; VPS4B, AA 99.8 2E-18 6.9E-23 196.7 19.3 200 780-1149 11-211 (322)
35 3eie_A Vacuolar protein sortin 99.8 2.8E-18 9.7E-23 195.1 15.8 201 780-1150 17-217 (322)
36 3eie_A Vacuolar protein sortin 99.8 4.5E-18 1.6E-22 193.4 17.2 215 183-574 18-232 (322)
37 3syl_A Protein CBBX; photosynt 99.8 2.8E-18 9.5E-23 192.7 15.1 229 172-576 20-261 (309)
38 2qp9_X Vacuolar protein sortin 99.7 1.8E-17 6.1E-22 191.3 18.1 218 183-577 51-268 (355)
39 2zan_A Vacuolar protein sortin 99.7 2.6E-17 8.8E-22 195.5 19.3 216 183-575 134-350 (444)
40 2zan_A Vacuolar protein sortin 99.7 2E-17 7E-22 196.4 16.6 201 780-1150 133-334 (444)
41 2qp9_X Vacuolar protein sortin 99.7 1.9E-17 6.6E-22 191.0 15.3 202 779-1150 49-250 (355)
42 3pxg_A Negative regulator of g 99.7 1.2E-17 4E-22 199.8 13.0 100 626-729 289-395 (468)
43 3d8b_A Fidgetin-like protein 1 99.7 7E-17 2.4E-21 186.4 17.2 201 780-1149 83-283 (357)
44 3syl_A Protein CBBX; photosynt 99.7 2.9E-17 1E-21 184.4 13.6 206 769-1150 19-237 (309)
45 3vfd_A Spastin; ATPase, microt 99.7 5.3E-17 1.8E-21 189.4 16.2 202 781-1151 115-316 (389)
46 3d8b_A Fidgetin-like protein 1 99.7 1.4E-16 4.9E-21 183.9 18.9 216 183-574 84-299 (357)
47 3b9p_A CG5977-PA, isoform A; A 99.7 1.5E-16 5.2E-21 177.8 17.0 201 781-1149 21-221 (297)
48 3vfd_A Spastin; ATPase, microt 99.7 1.6E-16 5.6E-21 185.3 17.8 215 183-573 115-329 (389)
49 3b9p_A CG5977-PA, isoform A; A 99.7 2.4E-16 8.3E-21 176.2 17.6 216 183-573 21-236 (297)
50 3cf0_A Transitional endoplasmi 99.7 5.6E-17 1.9E-21 182.8 12.3 218 183-576 15-235 (301)
51 3m6a_A ATP-dependent protease 99.7 5.5E-17 1.9E-21 197.3 12.2 245 752-1157 52-302 (543)
52 3cf0_A Transitional endoplasmi 99.7 1.6E-16 5.4E-21 179.1 13.3 180 780-1114 14-196 (301)
53 3pvs_A Replication-associated 99.7 6.5E-16 2.2E-20 183.5 19.2 140 419-602 106-246 (447)
54 1ypw_A Transitional endoplasmi 99.7 1.3E-17 4.4E-22 211.4 2.0 313 27-516 337-658 (806)
55 3h4m_A Proteasome-activating n 99.6 5.8E-16 2E-20 171.9 14.1 241 183-601 17-259 (285)
56 2c9o_A RUVB-like 1; hexameric 99.6 4.2E-16 1.4E-20 185.7 13.9 305 779-1151 35-400 (456)
57 3pfi_A Holliday junction ATP-d 99.6 3E-15 1E-19 170.4 18.4 138 419-597 106-251 (338)
58 2ce7_A Cell division protein F 99.6 1.3E-15 4.5E-20 181.6 14.9 217 183-576 16-235 (476)
59 1lv7_A FTSH; alpha/beta domain 99.6 5.3E-15 1.8E-19 162.2 18.4 236 183-599 12-251 (257)
60 2qz4_A Paraplegin; AAA+, SPG7, 99.6 2.7E-15 9.1E-20 164.0 16.0 238 183-599 6-248 (262)
61 2c9o_A RUVB-like 1; hexameric 99.6 1.9E-15 6.3E-20 180.1 15.9 135 420-601 296-438 (456)
62 3t15_A Ribulose bisphosphate c 99.6 1.3E-15 4.4E-20 171.2 12.7 155 816-1114 36-195 (293)
63 3t15_A Ribulose bisphosphate c 99.6 1.3E-15 4.3E-20 171.3 11.7 155 218-516 36-195 (293)
64 3uk6_A RUVB-like 2; hexameric 99.6 9.6E-15 3.3E-19 167.9 17.8 142 420-601 190-331 (368)
65 3u61_B DNA polymerase accessor 99.6 1.4E-14 4.8E-19 164.1 17.7 130 419-599 105-236 (324)
66 3hu3_A Transitional endoplasmi 99.6 3.1E-15 1.1E-19 179.4 12.9 215 183-575 204-420 (489)
67 3pfi_A Holliday junction ATP-d 99.6 6E-15 2.1E-19 167.9 14.0 101 1017-1147 106-214 (338)
68 3hu3_A Transitional endoplasmi 99.6 4.2E-15 1.5E-19 178.2 12.6 177 781-1114 204-382 (489)
69 3h4m_A Proteasome-activating n 99.6 8E-15 2.7E-19 162.7 13.9 180 781-1114 17-198 (285)
70 2r62_A Cell division protease 99.6 6.4E-16 2.2E-20 170.2 4.3 236 183-599 11-252 (268)
71 3pvs_A Replication-associated 99.6 2.8E-15 9.5E-20 178.1 10.0 98 1017-1149 106-204 (447)
72 2ce7_A Cell division protein F 99.6 1.2E-14 4E-19 173.5 15.0 178 781-1114 16-196 (476)
73 2qz4_A Paraplegin; AAA+, SPG7, 99.6 2.8E-14 9.7E-19 155.8 16.8 78 780-860 5-82 (262)
74 2r44_A Uncharacterized protein 99.6 2.8E-14 9.5E-19 162.2 16.4 161 420-600 110-297 (331)
75 1lv7_A FTSH; alpha/beta domain 99.5 8.4E-14 2.9E-18 152.6 18.0 178 781-1114 12-192 (257)
76 1g8p_A Magnesium-chelatase 38 99.5 1.2E-13 4.2E-18 157.2 18.2 157 419-599 144-321 (350)
77 3uk6_A RUVB-like 2; hexameric 99.5 1.1E-13 3.7E-18 159.1 17.7 104 1018-1151 190-293 (368)
78 2dhr_A FTSH; AAA+ protein, hex 99.5 5.1E-14 1.7E-18 168.9 14.0 235 183-598 31-269 (499)
79 2r62_A Cell division protease 99.5 1.3E-14 4.3E-19 159.9 7.0 174 781-1114 11-193 (268)
80 3te6_A Regulatory protein SIR3 99.5 3.9E-14 1.3E-18 160.6 11.2 149 419-599 132-314 (318)
81 3u61_B DNA polymerase accessor 99.5 2.6E-14 8.9E-19 161.8 8.6 100 1017-1150 105-206 (324)
82 2x8a_A Nuclear valosin-contain 99.5 7.8E-14 2.7E-18 155.3 12.2 181 777-1114 6-188 (274)
83 2x8a_A Nuclear valosin-contain 99.5 1E-13 3.4E-18 154.5 12.8 178 182-516 9-188 (274)
84 1d2n_A N-ethylmaleimide-sensit 99.5 1.4E-13 4.7E-18 152.3 13.8 121 419-574 124-246 (272)
85 2r44_A Uncharacterized protein 99.5 1.4E-13 4.9E-18 156.3 13.7 117 1018-1151 110-241 (331)
86 1hqc_A RUVB; extended AAA-ATPa 99.5 5.3E-13 1.8E-17 150.5 17.4 118 419-574 90-215 (324)
87 1ixz_A ATP-dependent metallopr 99.5 3.4E-13 1.2E-17 147.4 15.0 125 419-577 108-236 (254)
88 2bjv_A PSP operon transcriptio 99.5 1.1E-13 3.7E-18 152.4 10.9 129 419-575 100-238 (265)
89 1hqc_A RUVB; extended AAA-ATPa 99.5 1.5E-13 5.2E-18 154.9 11.6 103 1017-1149 90-200 (324)
90 2chg_A Replication factor C sm 99.5 1.2E-12 4E-17 137.6 17.6 123 419-598 102-224 (226)
91 3pxg_A Negative regulator of g 99.4 3.6E-14 1.2E-18 169.6 5.8 123 16-142 275-406 (468)
92 1g8p_A Magnesium-chelatase 38 99.4 3.5E-13 1.2E-17 153.5 12.9 121 1017-1153 144-284 (350)
93 1iqp_A RFCS; clamp loader, ext 99.4 1.1E-12 3.8E-17 147.4 16.1 107 419-574 110-216 (327)
94 2chq_A Replication factor C sm 99.4 7.7E-13 2.6E-17 148.2 14.1 107 419-574 102-208 (319)
95 1d2n_A N-ethylmaleimide-sensit 99.4 4.4E-13 1.5E-17 148.2 11.3 72 776-851 28-99 (272)
96 1in4_A RUVB, holliday junction 99.4 2.5E-12 8.7E-17 146.9 17.7 140 419-599 102-249 (334)
97 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 2.4E-12 8.1E-17 154.6 17.5 154 420-594 110-280 (500)
98 2dhr_A FTSH; AAA+ protein, hex 99.4 1E-12 3.5E-17 157.6 13.9 178 781-1114 31-211 (499)
99 1iy2_A ATP-dependent metallopr 99.4 2.5E-12 8.5E-17 142.8 15.8 141 419-596 132-276 (278)
100 1sxj_D Activator 1 41 kDa subu 99.4 6.9E-13 2.4E-17 151.1 11.3 108 419-575 133-240 (353)
101 1ojl_A Transcriptional regulat 99.4 1.2E-12 4.1E-17 147.8 12.6 130 419-575 96-233 (304)
102 1sxj_B Activator 1 37 kDa subu 99.4 3E-12 1E-16 143.6 15.0 123 419-598 107-229 (323)
103 2bjv_A PSP operon transcriptio 99.4 6.7E-13 2.3E-17 146.1 9.4 115 1017-1152 100-224 (265)
104 2chq_A Replication factor C sm 99.4 4.7E-13 1.6E-17 149.9 8.2 92 1017-1149 102-193 (319)
105 1iqp_A RFCS; clamp loader, ext 99.4 1.2E-12 4.1E-17 147.1 11.2 92 1017-1149 110-201 (327)
106 3te6_A Regulatory protein SIR3 99.4 1.2E-12 4E-17 148.5 11.0 109 1017-1152 132-268 (318)
107 2qby_B CDC6 homolog 3, cell di 99.4 9.6E-12 3.3E-16 143.3 18.2 116 421-576 135-251 (384)
108 2v1u_A Cell division control p 99.4 2.4E-12 8.3E-17 147.7 12.9 144 419-598 130-274 (387)
109 1jr3_A DNA polymerase III subu 99.3 1.3E-11 4.4E-16 141.6 18.6 124 419-598 119-242 (373)
110 1sxj_D Activator 1 41 kDa subu 99.3 5.3E-13 1.8E-17 152.0 6.9 93 1017-1150 133-225 (353)
111 2chg_A Replication factor C sm 99.3 7.3E-12 2.5E-16 131.4 14.6 92 1017-1149 102-193 (226)
112 1ojl_A Transcriptional regulat 99.3 1E-12 3.5E-17 148.4 8.6 116 1017-1152 96-219 (304)
113 1njg_A DNA polymerase III subu 99.3 1.5E-11 5.2E-16 130.3 17.2 124 419-598 126-249 (250)
114 1sxj_C Activator 1 40 kDa subu 99.3 5.2E-12 1.8E-16 144.3 14.4 105 420-573 111-215 (340)
115 1sxj_B Activator 1 37 kDa subu 99.3 2.2E-12 7.6E-17 144.7 10.7 91 1018-1149 108-198 (323)
116 1sxj_C Activator 1 40 kDa subu 99.3 2.6E-12 9.1E-17 146.7 11.3 92 1018-1150 111-202 (340)
117 1sxj_E Activator 1 40 kDa subu 99.3 9.5E-12 3.3E-16 142.1 14.9 108 419-575 134-242 (354)
118 3bos_A Putative DNA replicatio 99.3 8.8E-12 3E-16 133.3 12.6 135 419-597 104-240 (242)
119 1ixz_A ATP-dependent metallopr 99.3 7.3E-12 2.5E-16 136.9 12.2 85 1018-1114 109-196 (254)
120 1jr3_A DNA polymerase III subu 99.3 1.1E-11 3.6E-16 142.3 13.0 91 1018-1149 120-210 (373)
121 1sxj_A Activator 1 95 kDa subu 99.3 2E-11 6.9E-16 147.6 15.7 73 183-256 39-115 (516)
122 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 7.4E-12 2.5E-16 150.3 11.4 114 1018-1150 110-239 (500)
123 1jbk_A CLPB protein; beta barr 99.3 5.3E-12 1.8E-16 129.4 8.5 79 419-515 115-194 (195)
124 1sxj_A Activator 1 95 kDa subu 99.3 2.1E-12 7.2E-17 156.1 6.1 85 765-854 28-115 (516)
125 1l8q_A Chromosomal replication 99.3 1.3E-11 4.4E-16 139.9 12.0 112 419-576 98-214 (324)
126 1in4_A RUVB, holliday junction 99.3 3.7E-11 1.3E-15 137.2 15.9 103 1017-1149 102-212 (334)
127 2qby_B CDC6 homolog 3, cell di 99.2 4.2E-11 1.4E-15 137.9 15.5 96 1020-1150 136-232 (384)
128 1sxj_E Activator 1 40 kDa subu 99.2 1.6E-11 5.6E-16 140.2 10.6 92 1017-1149 134-226 (354)
129 3f9v_A Minichromosome maintena 99.2 2.3E-12 7.8E-17 158.2 3.6 162 419-597 391-584 (595)
130 2z4s_A Chromosomal replication 99.2 1.6E-11 5.5E-16 145.6 10.7 135 419-601 194-333 (440)
131 1njg_A DNA polymerase III subu 99.2 8.3E-11 2.8E-15 124.7 15.0 92 1017-1149 126-217 (250)
132 1iy2_A ATP-dependent metallopr 99.2 4.8E-11 1.6E-15 132.5 13.5 70 781-854 40-111 (278)
133 1fnn_A CDC6P, cell division co 99.2 1.7E-10 5.8E-15 132.8 18.2 127 419-576 125-253 (389)
134 1jbk_A CLPB protein; beta barr 99.2 1.1E-11 3.7E-16 127.1 7.2 79 1018-1114 116-195 (195)
135 2gno_A DNA polymerase III, gam 99.2 2.8E-11 9.5E-16 136.8 10.3 68 419-516 82-149 (305)
136 2qby_A CDC6 homolog 1, cell di 99.2 6.6E-11 2.3E-15 135.5 13.2 142 419-598 128-270 (386)
137 2v1u_A Cell division control p 99.2 7.8E-11 2.7E-15 135.2 13.2 104 1018-1150 131-236 (387)
138 1a5t_A Delta prime, HOLB; zinc 99.2 2E-10 6.9E-15 131.2 16.1 101 419-573 108-208 (334)
139 1l8q_A Chromosomal replication 99.2 5.1E-11 1.8E-15 135.0 10.8 96 1017-1149 98-198 (324)
140 3n70_A Transport activator; si 99.2 1.7E-11 5.7E-16 123.1 5.2 59 782-853 2-63 (145)
141 3n70_A Transport activator; si 99.1 2.4E-11 8.2E-16 122.0 5.9 59 184-255 2-63 (145)
142 2gno_A DNA polymerase III, gam 99.1 8.1E-11 2.8E-15 133.0 10.9 67 1018-1114 83-149 (305)
143 3bos_A Putative DNA replicatio 99.1 1.3E-10 4.3E-15 124.3 11.8 101 1017-1149 104-206 (242)
144 3co5_A Putative two-component 99.1 9.5E-12 3.3E-16 124.7 2.3 58 782-852 5-62 (143)
145 3k1j_A LON protease, ATP-depen 99.1 3.3E-11 1.1E-15 148.4 7.2 154 419-598 201-373 (604)
146 3co5_A Putative two-component 99.1 1.6E-11 5.5E-16 123.0 3.2 58 184-254 5-62 (143)
147 1fnn_A CDC6P, cell division co 99.1 7.5E-10 2.6E-14 127.4 16.6 102 1018-1150 126-228 (389)
148 1a5t_A Delta prime, HOLB; zinc 99.1 6.7E-10 2.3E-14 126.8 15.4 86 1018-1149 109-194 (334)
149 3f9v_A Minichromosome maintena 99.1 1.9E-11 6.5E-16 150.1 1.8 121 1017-1151 391-536 (595)
150 2p65_A Hypothetical protein PF 99.1 8.6E-11 2.9E-15 120.3 5.9 46 183-242 22-67 (187)
151 2qby_A CDC6 homolog 1, cell di 99.0 8.4E-10 2.9E-14 126.3 12.8 103 1018-1150 129-232 (386)
152 4akg_A Glutathione S-transfera 99.0 2E-08 6.7E-13 139.5 27.9 90 419-516 1336-1428(2695)
153 2z4s_A Chromosomal replication 99.0 4.5E-10 1.5E-14 133.2 10.3 97 1017-1149 194-295 (440)
154 3k1j_A LON protease, ATP-depen 99.0 1E-10 3.4E-15 144.1 4.8 110 1017-1150 201-328 (604)
155 2p65_A Hypothetical protein PF 99.0 1.6E-10 5.5E-15 118.3 5.3 46 781-840 22-67 (187)
156 1ny5_A Transcriptional regulat 99.0 1.4E-09 4.7E-14 126.9 12.1 130 419-575 231-368 (387)
157 3dzd_A Transcriptional regulat 99.0 1.6E-09 5.6E-14 125.5 12.3 131 419-575 222-359 (368)
158 3dzd_A Transcriptional regulat 98.9 1.8E-09 6.1E-14 125.1 8.7 116 1017-1152 222-345 (368)
159 1ny5_A Transcriptional regulat 98.8 5.4E-09 1.9E-13 121.9 10.4 115 1017-1152 231-354 (387)
160 3f8t_A Predicted ATPase involv 98.8 1.2E-08 4.1E-13 120.0 11.5 159 419-597 300-480 (506)
161 4akg_A Glutathione S-transfera 98.8 3.1E-07 1E-11 127.8 26.2 84 1019-1114 1338-1428(2695)
162 1w5s_A Origin recognition comp 98.7 7.7E-08 2.6E-12 111.5 16.0 126 419-575 138-271 (412)
163 1w5s_A Origin recognition comp 98.6 2.3E-07 7.8E-12 107.5 15.1 105 1017-1150 138-250 (412)
164 3f8t_A Predicted ATPase involv 98.6 4.1E-08 1.4E-12 115.5 8.6 121 1017-1151 300-429 (506)
165 3vkg_A Dynein heavy chain, cyt 98.6 3.2E-06 1.1E-10 118.5 27.2 89 420-516 1375-1466(3245)
166 3vkg_A Dynein heavy chain, cyt 98.5 5.5E-06 1.9E-10 116.1 25.5 88 1019-1114 1376-1466(3245)
167 1jr3_D DNA polymerase III, del 98.2 9.6E-06 3.3E-10 92.4 12.9 131 419-599 76-208 (343)
168 2qen_A Walker-type ATPase; unk 98.2 4.8E-05 1.6E-09 85.6 18.6 53 183-253 12-64 (350)
169 2qen_A Walker-type ATPase; unk 98.1 1.5E-05 5E-10 89.8 13.3 53 781-851 12-64 (350)
170 1jr3_D DNA polymerase III, del 97.8 3.4E-05 1.2E-09 87.8 10.1 96 1018-1149 77-174 (343)
171 2fna_A Conserved hypothetical 97.7 0.00018 6.1E-09 81.0 13.5 54 183-254 13-66 (357)
172 2kjq_A DNAA-related protein; s 97.7 1.5E-05 5.1E-10 80.4 3.7 35 219-253 37-74 (149)
173 2fna_A Conserved hypothetical 97.7 0.00045 1.5E-08 77.7 15.9 54 781-852 13-66 (357)
174 1u0j_A DNA replication protein 97.7 4.1E-05 1.4E-09 84.5 6.7 69 1046-1115 163-249 (267)
175 3ec2_A DNA replication protein 97.7 4.2E-05 1.4E-09 78.7 6.2 34 218-251 38-75 (180)
176 2kjq_A DNAA-related protein; s 97.6 4.8E-05 1.7E-09 76.6 6.1 35 817-851 37-74 (149)
177 1u0j_A DNA replication protein 97.6 0.00014 4.7E-09 80.3 9.0 25 219-243 105-129 (267)
178 3cmw_A Protein RECA, recombina 97.4 0.00025 8.4E-09 95.3 10.6 73 779-851 1018-1120(1706)
179 3ec2_A DNA replication protein 97.1 0.00028 9.7E-09 72.4 4.2 25 816-840 38-62 (180)
180 2w58_A DNAI, primosome compone 97.1 0.00047 1.6E-08 71.9 5.8 35 817-851 55-92 (202)
181 3cmw_A Protein RECA, recombina 97.0 0.0012 4.2E-08 88.7 10.6 71 183-253 1020-1120(1706)
182 1qhx_A CPT, protein (chloramph 97.0 0.00051 1.8E-08 69.9 4.8 36 218-253 3-38 (178)
183 3trf_A Shikimate kinase, SK; a 97.0 0.00037 1.3E-08 71.5 3.8 33 218-250 5-37 (185)
184 3trf_A Shikimate kinase, SK; a 96.9 0.00039 1.3E-08 71.4 3.6 33 816-848 5-37 (185)
185 1qhx_A CPT, protein (chloramph 96.9 0.00064 2.2E-08 69.2 5.2 36 816-851 3-38 (178)
186 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.0012 4.1E-08 74.7 6.2 31 219-249 124-156 (331)
187 2w58_A DNAI, primosome compone 96.8 0.00072 2.4E-08 70.5 4.1 35 219-253 55-92 (202)
188 3vaa_A Shikimate kinase, SK; s 96.7 0.00072 2.5E-08 70.7 3.8 32 219-250 26-57 (199)
189 3vaa_A Shikimate kinase, SK; s 96.7 0.00075 2.6E-08 70.6 3.7 33 816-848 25-57 (199)
190 2cdn_A Adenylate kinase; phosp 96.7 0.00099 3.4E-08 69.5 4.2 33 217-249 19-51 (201)
191 3kb2_A SPBC2 prophage-derived 96.6 0.0011 3.9E-08 66.6 3.9 31 220-250 3-33 (173)
192 2cdn_A Adenylate kinase; phosp 96.6 0.0012 4E-08 69.0 4.1 31 816-846 20-50 (201)
193 2iyv_A Shikimate kinase, SK; t 96.6 0.00093 3.2E-08 68.5 3.3 32 219-250 3-34 (184)
194 2qgz_A Helicase loader, putati 96.6 0.0014 4.9E-08 73.7 5.0 35 816-850 152-190 (308)
195 3kb2_A SPBC2 prophage-derived 96.6 0.0013 4.3E-08 66.3 4.0 31 818-848 3-33 (173)
196 2iyv_A Shikimate kinase, SK; t 96.5 0.001 3.6E-08 68.2 3.3 32 817-848 3-34 (184)
197 1zuh_A Shikimate kinase; alpha 96.5 0.0012 4E-08 66.9 3.5 32 219-250 8-39 (168)
198 2rhm_A Putative kinase; P-loop 96.5 0.0012 4E-08 68.0 3.6 31 218-248 5-35 (193)
199 3iij_A Coilin-interacting nucl 96.5 0.0011 3.6E-08 68.0 3.0 32 218-249 11-42 (180)
200 1via_A Shikimate kinase; struc 96.5 0.00098 3.4E-08 68.0 2.7 29 220-248 6-34 (175)
201 1via_A Shikimate kinase; struc 96.5 0.001 3.5E-08 67.8 2.8 30 817-846 5-34 (175)
202 1zuh_A Shikimate kinase; alpha 96.5 0.0013 4.3E-08 66.6 3.4 31 816-846 7-37 (168)
203 2rhm_A Putative kinase; P-loop 96.5 0.0014 4.8E-08 67.4 3.7 31 816-846 5-35 (193)
204 3iij_A Coilin-interacting nucl 96.5 0.0012 4.1E-08 67.6 3.1 32 816-847 11-42 (180)
205 1kag_A SKI, shikimate kinase I 96.4 0.0012 4.2E-08 66.8 3.0 29 219-247 5-33 (173)
206 1y63_A LMAJ004144AAA protein; 96.4 0.0013 4.4E-08 67.9 3.2 32 218-249 10-42 (184)
207 2qgz_A Helicase loader, putati 96.4 0.0018 6.1E-08 72.9 4.3 35 218-252 152-190 (308)
208 1kag_A SKI, shikimate kinase I 96.4 0.0014 4.9E-08 66.2 3.2 29 817-845 5-33 (173)
209 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.0036 1.2E-07 70.8 6.7 31 817-847 124-156 (331)
210 1y63_A LMAJ004144AAA protein; 96.4 0.0015 5.1E-08 67.5 3.2 31 816-846 10-41 (184)
211 1tev_A UMP-CMP kinase; ploop, 96.3 0.0015 5.1E-08 67.0 3.1 30 218-247 3-32 (196)
212 2c95_A Adenylate kinase 1; tra 96.3 0.0016 5.6E-08 67.1 3.1 31 218-248 9-39 (196)
213 3t61_A Gluconokinase; PSI-biol 96.3 0.0021 7.1E-08 67.1 3.8 32 218-249 18-49 (202)
214 2p5t_B PEZT; postsegregational 96.3 0.0044 1.5E-07 67.4 6.5 38 217-254 31-68 (253)
215 2c95_A Adenylate kinase 1; tra 96.3 0.0019 6.5E-08 66.5 3.3 31 816-846 9-39 (196)
216 1tev_A UMP-CMP kinase; ploop, 96.3 0.0018 6.3E-08 66.4 3.2 30 816-845 3-32 (196)
217 2ze6_A Isopentenyl transferase 96.2 0.0023 7.7E-08 69.9 3.9 33 220-252 3-35 (253)
218 3cm0_A Adenylate kinase; ATP-b 96.2 0.0016 5.4E-08 66.8 2.4 29 219-247 5-33 (186)
219 2vli_A Antibiotic resistance p 96.2 0.0024 8.2E-08 65.1 3.7 30 218-247 5-34 (183)
220 1e6c_A Shikimate kinase; phosp 96.2 0.0018 6.3E-08 65.4 2.8 31 219-249 3-33 (173)
221 1aky_A Adenylate kinase; ATP:A 96.2 0.0021 7.2E-08 68.1 3.3 31 218-248 4-34 (220)
222 1zp6_A Hypothetical protein AT 96.2 0.0021 7.3E-08 66.0 3.3 37 816-852 9-45 (191)
223 2ze6_A Isopentenyl transferase 96.2 0.0025 8.7E-08 69.5 3.9 32 818-849 3-34 (253)
224 3lw7_A Adenylate kinase relate 96.2 0.0021 7.1E-08 64.4 3.0 29 817-846 2-30 (179)
225 2vli_A Antibiotic resistance p 96.2 0.0026 9E-08 64.8 3.7 30 816-845 5-34 (183)
226 3lw7_A Adenylate kinase relate 96.2 0.0021 7.1E-08 64.4 2.9 29 219-248 2-30 (179)
227 1tue_A Replication protein E1; 96.2 0.0022 7.6E-08 68.0 3.2 25 219-243 59-83 (212)
228 1aky_A Adenylate kinase; ATP:A 96.2 0.0023 7.9E-08 67.8 3.4 31 816-846 4-34 (220)
229 2pt5_A Shikimate kinase, SK; a 96.1 0.0025 8.7E-08 64.1 3.5 31 220-250 2-32 (168)
230 1ukz_A Uridylate kinase; trans 96.1 0.0029 1E-07 65.9 4.1 31 816-846 15-45 (203)
231 3t61_A Gluconokinase; PSI-biol 96.1 0.0025 8.6E-08 66.5 3.5 31 816-846 18-48 (202)
232 2p5t_B PEZT; postsegregational 96.1 0.0055 1.9E-07 66.7 6.4 38 816-853 32-69 (253)
233 1ukz_A Uridylate kinase; trans 96.1 0.0028 9.4E-08 66.1 3.8 31 218-248 15-45 (203)
234 1zp6_A Hypothetical protein AT 96.1 0.002 7E-08 66.2 2.8 37 218-254 9-45 (191)
235 1e6c_A Shikimate kinase; phosp 96.1 0.0021 7.3E-08 64.8 2.8 30 817-846 3-32 (173)
236 3umf_A Adenylate kinase; rossm 96.1 0.0032 1.1E-07 67.5 4.2 30 816-845 29-58 (217)
237 1ly1_A Polynucleotide kinase; 96.1 0.0015 5.1E-08 66.2 1.6 26 218-243 2-28 (181)
238 2bwj_A Adenylate kinase 5; pho 96.1 0.0023 7.8E-08 66.1 3.0 30 218-247 12-41 (199)
239 1qf9_A UMP/CMP kinase, protein 96.1 0.0023 8E-08 65.4 3.0 30 218-247 6-35 (194)
240 1kht_A Adenylate kinase; phosp 96.1 0.002 7E-08 65.9 2.5 25 219-243 4-28 (192)
241 3fb4_A Adenylate kinase; psych 96.1 0.0028 9.6E-08 66.7 3.6 30 220-249 2-31 (216)
242 3dl0_A Adenylate kinase; phosp 96.1 0.0027 9.3E-08 66.9 3.4 30 220-249 2-31 (216)
243 2bwj_A Adenylate kinase 5; pho 96.1 0.0026 8.8E-08 65.7 3.2 30 816-845 12-41 (199)
244 3cm0_A Adenylate kinase; ATP-b 96.1 0.0031 1.1E-07 64.5 3.7 29 817-845 5-33 (186)
245 1tue_A Replication protein E1; 96.1 0.0027 9.1E-08 67.4 3.2 26 817-842 59-84 (212)
246 1zd8_A GTP:AMP phosphotransfer 96.1 0.0023 7.8E-08 68.2 2.8 31 218-248 7-37 (227)
247 2r2a_A Uncharacterized protein 96.1 0.012 4E-07 62.2 8.2 66 419-505 87-152 (199)
248 3umf_A Adenylate kinase; rossm 96.0 0.0031 1E-07 67.6 3.7 32 218-251 29-60 (217)
249 1zak_A Adenylate kinase; ATP:A 96.0 0.002 6.9E-08 68.3 2.3 30 218-247 5-34 (222)
250 1qf9_A UMP/CMP kinase, protein 96.0 0.0027 9.2E-08 65.0 3.1 30 816-845 6-35 (194)
251 1knq_A Gluconate kinase; ALFA/ 96.0 0.0033 1.1E-07 63.8 3.8 33 219-253 9-41 (175)
252 2pt5_A Shikimate kinase, SK; a 96.0 0.003 1E-07 63.6 3.4 29 818-846 2-30 (168)
253 1gvn_B Zeta; postsegregational 96.0 0.0046 1.6E-07 68.8 5.3 38 217-254 32-69 (287)
254 1zd8_A GTP:AMP phosphotransfer 96.0 0.0027 9.4E-08 67.6 3.2 31 816-846 7-37 (227)
255 3sr0_A Adenylate kinase; phosp 96.0 0.0037 1.3E-07 66.3 4.2 28 818-845 2-29 (206)
256 1ly1_A Polynucleotide kinase; 96.0 0.0029 9.9E-08 64.1 3.0 26 816-841 2-28 (181)
257 1ak2_A Adenylate kinase isoenz 96.0 0.003 1E-07 67.7 3.3 31 218-248 16-46 (233)
258 1kht_A Adenylate kinase; phosp 96.0 0.0025 8.4E-08 65.3 2.5 25 817-841 4-28 (192)
259 3dl0_A Adenylate kinase; phosp 96.0 0.0032 1.1E-07 66.3 3.5 29 818-846 2-30 (216)
260 1knq_A Gluconate kinase; ALFA/ 96.0 0.0039 1.3E-07 63.3 3.8 35 816-852 8-42 (175)
261 1ak2_A Adenylate kinase isoenz 95.9 0.0033 1.1E-07 67.4 3.3 31 816-846 16-46 (233)
262 3fb4_A Adenylate kinase; psych 95.9 0.0034 1.2E-07 66.0 3.4 29 818-846 2-30 (216)
263 3sr0_A Adenylate kinase; phosp 95.9 0.0038 1.3E-07 66.3 3.8 30 220-251 2-31 (206)
264 3tlx_A Adenylate kinase 2; str 95.9 0.0032 1.1E-07 68.3 3.2 30 218-247 29-58 (243)
265 1zak_A Adenylate kinase; ATP:A 95.9 0.0023 7.9E-08 67.9 2.1 30 816-845 5-34 (222)
266 1gvn_B Zeta; postsegregational 95.9 0.0059 2E-07 68.0 5.2 37 816-852 33-69 (287)
267 3be4_A Adenylate kinase; malar 95.9 0.0033 1.1E-07 66.7 3.0 31 219-249 6-36 (217)
268 2r2a_A Uncharacterized protein 95.9 0.0098 3.4E-07 62.8 6.5 66 1017-1103 87-152 (199)
269 3be4_A Adenylate kinase; malar 95.8 0.0036 1.2E-07 66.4 3.1 30 817-846 6-35 (217)
270 3tlx_A Adenylate kinase 2; str 95.8 0.0039 1.3E-07 67.5 3.3 30 816-845 29-58 (243)
271 1e4v_A Adenylate kinase; trans 95.8 0.0041 1.4E-07 65.6 3.3 30 220-249 2-31 (214)
272 4eun_A Thermoresistant glucoki 95.8 0.0047 1.6E-07 64.5 3.6 35 218-254 29-63 (200)
273 2pez_A Bifunctional 3'-phospho 95.8 0.0071 2.4E-07 61.7 4.8 36 219-254 6-44 (179)
274 1e4v_A Adenylate kinase; trans 95.7 0.0046 1.6E-07 65.2 3.4 29 818-846 2-30 (214)
275 2pez_A Bifunctional 3'-phospho 95.7 0.0083 2.9E-07 61.2 5.2 36 816-851 5-43 (179)
276 4eun_A Thermoresistant glucoki 95.7 0.0066 2.2E-07 63.4 4.4 35 816-852 29-63 (200)
277 3crm_A TRNA delta(2)-isopenten 95.7 0.0058 2E-07 69.2 4.1 37 816-852 5-41 (323)
278 3crm_A TRNA delta(2)-isopenten 95.7 0.005 1.7E-07 69.7 3.5 36 218-253 5-40 (323)
279 2ga8_A Hypothetical 39.9 kDa p 95.7 0.0066 2.3E-07 69.5 4.5 30 817-846 25-54 (359)
280 1nks_A Adenylate kinase; therm 95.6 0.0054 1.9E-07 62.7 3.4 32 220-251 3-37 (194)
281 2wwf_A Thymidilate kinase, put 95.6 0.0047 1.6E-07 64.5 2.9 33 218-250 10-42 (212)
282 2pbr_A DTMP kinase, thymidylat 95.6 0.0077 2.6E-07 61.7 4.4 31 220-250 2-35 (195)
283 3uie_A Adenylyl-sulfate kinase 95.6 0.009 3.1E-07 62.3 4.9 37 218-254 25-64 (200)
284 1cke_A CK, MSSA, protein (cyti 95.6 0.0066 2.3E-07 64.2 3.9 28 219-246 6-33 (227)
285 1cke_A CK, MSSA, protein (cyti 95.6 0.0071 2.4E-07 63.9 4.1 29 817-845 6-34 (227)
286 2pbr_A DTMP kinase, thymidylat 95.6 0.0091 3.1E-07 61.1 4.7 31 818-848 2-35 (195)
287 3nwj_A ATSK2; P loop, shikimat 95.5 0.0059 2E-07 66.8 3.4 32 219-250 49-80 (250)
288 3a4m_A L-seryl-tRNA(SEC) kinas 95.5 0.01 3.5E-07 64.8 5.1 38 816-853 4-44 (260)
289 3a8t_A Adenylate isopentenyltr 95.5 0.0056 1.9E-07 69.7 3.0 36 219-254 41-76 (339)
290 2jaq_A Deoxyguanosine kinase; 95.5 0.008 2.7E-07 62.1 3.9 28 818-845 2-29 (205)
291 2jaq_A Deoxyguanosine kinase; 95.4 0.0071 2.4E-07 62.5 3.5 28 220-247 2-29 (205)
292 3a4m_A L-seryl-tRNA(SEC) kinas 95.4 0.0097 3.3E-07 65.0 4.7 37 218-254 4-43 (260)
293 3uie_A Adenylyl-sulfate kinase 95.4 0.012 4.3E-07 61.2 5.3 37 816-852 25-64 (200)
294 2if2_A Dephospho-COA kinase; a 95.4 0.0056 1.9E-07 63.8 2.6 30 220-250 3-32 (204)
295 3a8t_A Adenylate isopentenyltr 95.4 0.0069 2.4E-07 69.0 3.6 35 817-851 41-75 (339)
296 2bbw_A Adenylate kinase 4, AK4 95.4 0.01 3.4E-07 64.1 4.7 30 218-247 27-56 (246)
297 1nn5_A Similar to deoxythymidy 95.4 0.0062 2.1E-07 63.6 2.9 33 218-250 9-41 (215)
298 2z0h_A DTMP kinase, thymidylat 95.4 0.017 5.7E-07 59.4 6.1 31 819-849 3-36 (197)
299 2if2_A Dephospho-COA kinase; a 95.4 0.0064 2.2E-07 63.3 2.9 28 818-846 3-30 (204)
300 2xb4_A Adenylate kinase; ATP-b 95.4 0.0065 2.2E-07 64.7 3.0 27 220-246 2-28 (223)
301 3ake_A Cytidylate kinase; CMP 95.4 0.0087 3E-07 62.1 3.8 30 220-249 4-33 (208)
302 3foz_A TRNA delta(2)-isopenten 95.3 0.01 3.6E-07 66.7 4.6 37 816-852 10-46 (316)
303 2ga8_A Hypothetical 39.9 kDa p 95.3 0.011 3.6E-07 67.8 4.7 31 219-249 25-55 (359)
304 3nwj_A ATSK2; P loop, shikimat 95.3 0.0078 2.7E-07 65.8 3.5 31 817-847 49-79 (250)
305 2xb4_A Adenylate kinase; ATP-b 95.3 0.0066 2.3E-07 64.7 2.8 28 818-845 2-29 (223)
306 2v54_A DTMP kinase, thymidylat 95.3 0.008 2.7E-07 62.3 3.4 33 218-250 4-37 (204)
307 1uf9_A TT1252 protein; P-loop, 95.3 0.0073 2.5E-07 62.4 3.0 30 218-248 8-37 (203)
308 1nks_A Adenylate kinase; therm 95.3 0.0062 2.1E-07 62.2 2.4 24 818-841 3-26 (194)
309 2v54_A DTMP kinase, thymidylat 95.3 0.01 3.4E-07 61.5 4.0 33 816-848 4-37 (204)
310 3foz_A TRNA delta(2)-isopenten 95.3 0.0094 3.2E-07 67.1 3.9 37 218-254 10-46 (316)
311 2wwf_A Thymidilate kinase, put 95.2 0.0063 2.2E-07 63.5 2.3 32 816-847 10-41 (212)
312 2bbw_A Adenylate kinase 4, AK4 95.2 0.012 4E-07 63.5 4.5 29 816-844 27-55 (246)
313 1jjv_A Dephospho-COA kinase; P 95.2 0.0076 2.6E-07 62.9 2.8 29 219-248 3-31 (206)
314 2z0h_A DTMP kinase, thymidylat 95.2 0.012 4.1E-07 60.5 4.3 31 220-250 2-35 (197)
315 3ake_A Cytidylate kinase; CMP 95.2 0.01 3.5E-07 61.6 3.7 29 818-846 4-32 (208)
316 2plr_A DTMP kinase, probable t 95.2 0.011 3.8E-07 61.3 4.0 27 219-245 5-31 (213)
317 3r20_A Cytidylate kinase; stru 95.2 0.011 3.6E-07 64.1 3.9 29 218-246 9-37 (233)
318 1jjv_A Dephospho-COA kinase; P 95.2 0.0084 2.9E-07 62.6 2.9 29 817-846 3-31 (206)
319 1uf9_A TT1252 protein; P-loop, 95.1 0.0095 3.2E-07 61.6 3.2 30 816-846 8-37 (203)
320 1qzm_A ATP-dependent protease 95.1 0.057 1.9E-06 50.1 7.9 86 505-599 2-91 (94)
321 2plr_A DTMP kinase, probable t 95.1 0.019 6.3E-07 59.7 5.3 27 817-843 5-31 (213)
322 3r20_A Cytidylate kinase; stru 95.1 0.013 4.6E-07 63.3 4.3 29 816-844 9-37 (233)
323 1uj2_A Uridine-cytidine kinase 95.0 0.014 4.9E-07 63.2 4.3 38 218-255 22-67 (252)
324 1nn5_A Similar to deoxythymidy 95.0 0.0083 2.8E-07 62.7 2.3 31 816-846 9-39 (215)
325 3exa_A TRNA delta(2)-isopenten 94.9 0.012 4.2E-07 66.3 3.5 36 219-254 4-39 (322)
326 2yvu_A Probable adenylyl-sulfa 94.9 0.023 7.9E-07 58.2 5.2 34 218-251 13-49 (186)
327 2grj_A Dephospho-COA kinase; T 94.8 0.012 4.1E-07 61.6 3.0 31 219-249 13-43 (192)
328 1uj2_A Uridine-cytidine kinase 94.8 0.017 5.7E-07 62.7 4.0 38 816-853 22-67 (252)
329 3exa_A TRNA delta(2)-isopenten 94.7 0.015 5.1E-07 65.6 3.6 35 817-851 4-38 (322)
330 2qor_A Guanylate kinase; phosp 94.7 0.015 5E-07 60.9 3.3 26 218-243 12-37 (204)
331 2h92_A Cytidylate kinase; ross 94.7 0.013 4.4E-07 61.7 2.9 31 218-248 3-33 (219)
332 2grj_A Dephospho-COA kinase; T 94.7 0.014 4.8E-07 61.2 3.1 30 817-846 13-42 (192)
333 1vht_A Dephospho-COA kinase; s 94.7 0.014 4.7E-07 61.5 3.0 30 219-249 5-34 (218)
334 4e22_A Cytidylate kinase; P-lo 94.6 0.021 7.2E-07 62.1 4.3 29 817-845 28-56 (252)
335 1ye8_A Protein THEP1, hypothet 94.6 0.018 6E-07 59.5 3.5 24 220-243 2-25 (178)
336 2qt1_A Nicotinamide riboside k 94.6 0.012 4.2E-07 61.4 2.3 29 219-247 22-51 (207)
337 4e22_A Cytidylate kinase; P-lo 94.6 0.021 7.1E-07 62.1 4.2 28 219-246 28-55 (252)
338 2h92_A Cytidylate kinase; ross 94.5 0.016 5.4E-07 61.0 3.1 30 817-846 4-33 (219)
339 2qor_A Guanylate kinase; phosp 94.5 0.018 6.3E-07 60.1 3.6 26 816-841 12-37 (204)
340 1vht_A Dephospho-COA kinase; s 94.5 0.017 5.7E-07 60.9 3.2 29 817-846 5-33 (218)
341 1kgd_A CASK, peripheral plasma 94.5 0.021 7.1E-07 58.6 3.7 25 219-243 6-30 (180)
342 1ltq_A Polynucleotide kinase; 94.5 0.013 4.4E-07 64.9 2.3 25 218-242 2-26 (301)
343 3cmu_A Protein RECA, recombina 94.4 0.038 1.3E-06 75.5 7.1 37 816-852 1427-1466(2050)
344 1kgd_A CASK, peripheral plasma 94.4 0.023 7.9E-07 58.3 3.9 25 817-841 6-30 (180)
345 2qt1_A Nicotinamide riboside k 94.4 0.015 5.2E-07 60.7 2.6 34 817-852 22-56 (207)
346 1ye8_A Protein THEP1, hypothet 94.4 0.02 6.9E-07 59.1 3.4 26 818-843 2-27 (178)
347 2yvu_A Probable adenylyl-sulfa 94.4 0.034 1.2E-06 57.0 5.2 34 816-849 13-49 (186)
348 1q3t_A Cytidylate kinase; nucl 94.4 0.02 6.9E-07 61.3 3.5 30 218-247 16-45 (236)
349 1ltq_A Polynucleotide kinase; 94.3 0.014 5E-07 64.5 2.3 29 817-845 3-32 (301)
350 2j41_A Guanylate kinase; GMP, 94.3 0.02 7E-07 59.2 3.1 25 218-242 6-30 (207)
351 3d3q_A TRNA delta(2)-isopenten 94.2 0.021 7.1E-07 65.1 3.3 33 219-251 8-40 (340)
352 1m7g_A Adenylylsulfate kinase; 94.2 0.028 9.5E-07 59.1 4.1 35 218-252 25-63 (211)
353 1q3t_A Cytidylate kinase; nucl 94.2 0.03 1E-06 60.0 4.3 30 816-845 16-45 (236)
354 3eph_A TRNA isopentenyltransfe 94.2 0.027 9.4E-07 65.5 4.3 33 817-849 3-35 (409)
355 3tr0_A Guanylate kinase, GMP k 94.2 0.026 8.8E-07 58.5 3.7 33 219-253 8-40 (205)
356 3tau_A Guanylate kinase, GMP k 94.1 0.022 7.4E-07 60.0 3.1 26 218-243 8-33 (208)
357 3b9q_A Chloroplast SRP recepto 94.1 0.078 2.7E-06 59.4 7.8 25 816-840 100-124 (302)
358 3cmu_A Protein RECA, recombina 94.1 0.051 1.7E-06 74.3 7.2 37 217-253 1426-1465(2050)
359 1m7g_A Adenylylsulfate kinase; 94.1 0.033 1.1E-06 58.5 4.4 35 816-850 25-63 (211)
360 1rz3_A Hypothetical protein rb 94.1 0.072 2.4E-06 55.6 6.9 36 218-253 22-60 (201)
361 3b9q_A Chloroplast SRP recepto 94.1 0.057 1.9E-06 60.6 6.5 25 218-242 100-124 (302)
362 3d3q_A TRNA delta(2)-isopenten 94.1 0.024 8.2E-07 64.6 3.5 33 817-849 8-40 (340)
363 2f6r_A COA synthase, bifunctio 94.1 0.025 8.5E-07 62.6 3.5 30 218-248 75-104 (281)
364 3upu_A ATP-dependent DNA helic 94.0 0.034 1.2E-06 65.8 4.9 41 187-242 29-69 (459)
365 3eph_A TRNA isopentenyltransfe 94.0 0.026 9E-07 65.6 3.8 36 219-254 3-38 (409)
366 3tr0_A Guanylate kinase, GMP k 94.0 0.031 1E-06 57.9 3.8 33 817-851 8-40 (205)
367 2bdt_A BH3686; alpha-beta prot 94.0 0.025 8.6E-07 58.1 3.1 24 219-242 3-26 (189)
368 2j41_A Guanylate kinase; GMP, 93.9 0.025 8.5E-07 58.6 3.1 24 817-840 7-30 (207)
369 1rz3_A Hypothetical protein rb 93.9 0.094 3.2E-06 54.7 7.5 36 816-851 22-60 (201)
370 2bdt_A BH3686; alpha-beta prot 93.9 0.029 9.9E-07 57.6 3.4 34 817-851 3-36 (189)
371 3c8u_A Fructokinase; YP_612366 93.9 0.032 1.1E-06 58.5 3.9 26 218-243 22-47 (208)
372 2f6r_A COA synthase, bifunctio 93.9 0.026 8.9E-07 62.5 3.2 30 816-846 75-104 (281)
373 3a00_A Guanylate kinase, GMP k 93.8 0.029 9.9E-07 57.8 3.3 25 219-243 2-26 (186)
374 3tau_A Guanylate kinase, GMP k 93.8 0.028 9.7E-07 59.0 3.2 26 816-841 8-33 (208)
375 3zvl_A Bifunctional polynucleo 93.8 0.019 6.4E-07 67.3 2.0 30 218-247 258-287 (416)
376 3asz_A Uridine kinase; cytidin 93.8 0.023 7.9E-07 59.3 2.5 25 219-243 7-31 (211)
377 3a00_A Guanylate kinase, GMP k 93.8 0.032 1.1E-06 57.4 3.5 25 817-841 2-26 (186)
378 3upu_A ATP-dependent DNA helic 93.7 0.046 1.6E-06 64.7 5.1 41 785-840 29-69 (459)
379 1svm_A Large T antigen; AAA+ f 93.7 0.034 1.2E-06 64.3 3.9 30 218-247 169-198 (377)
380 1svm_A Large T antigen; AAA+ f 93.7 0.035 1.2E-06 64.3 3.8 30 816-845 169-198 (377)
381 3ney_A 55 kDa erythrocyte memb 93.6 0.04 1.4E-06 58.0 3.9 27 217-243 18-44 (197)
382 3e70_C DPA, signal recognition 93.6 0.08 2.7E-06 60.1 6.7 26 217-242 128-153 (328)
383 3asz_A Uridine kinase; cytidin 93.6 0.028 9.4E-07 58.8 2.7 26 816-841 6-31 (211)
384 3fdi_A Uncharacterized protein 93.5 0.049 1.7E-06 57.2 4.5 29 817-845 7-35 (201)
385 1vma_A Cell division protein F 93.5 0.16 5.6E-06 57.0 9.0 26 217-242 103-128 (306)
386 3c8u_A Fructokinase; YP_612366 93.5 0.041 1.4E-06 57.7 3.8 26 816-841 22-47 (208)
387 1lvg_A Guanylate kinase, GMP k 93.5 0.034 1.2E-06 58.1 3.2 25 219-243 5-29 (198)
388 1x6v_B Bifunctional 3'-phospho 93.5 0.05 1.7E-06 66.8 5.1 36 218-253 52-90 (630)
389 1zu4_A FTSY; GTPase, signal re 93.5 0.14 4.8E-06 57.9 8.3 36 217-252 104-142 (320)
390 3kl4_A SRP54, signal recogniti 93.5 0.095 3.3E-06 61.7 7.2 37 217-253 96-135 (433)
391 3fdi_A Uncharacterized protein 93.4 0.045 1.5E-06 57.5 4.0 30 219-248 7-36 (201)
392 3dm5_A SRP54, signal recogniti 93.4 0.12 4E-06 61.0 7.8 37 217-253 99-138 (443)
393 2og2_A Putative signal recogni 93.4 0.12 4.1E-06 59.4 7.7 25 816-840 157-181 (359)
394 3ney_A 55 kDa erythrocyte memb 93.4 0.063 2.2E-06 56.5 4.9 26 816-841 19-44 (197)
395 3zvl_A Bifunctional polynucleo 93.3 0.022 7.5E-07 66.7 1.5 30 816-845 258-287 (416)
396 1vma_A Cell division protein F 93.3 0.19 6.7E-06 56.3 9.0 34 816-849 104-140 (306)
397 3e70_C DPA, signal recognition 93.3 0.14 4.9E-06 58.0 8.0 25 816-840 129-153 (328)
398 2px0_A Flagellar biosynthesis 93.2 0.12 4E-06 57.8 7.1 34 218-251 105-142 (296)
399 1x6v_B Bifunctional 3'-phospho 93.2 0.065 2.2E-06 65.9 5.4 36 816-851 52-90 (630)
400 1lvg_A Guanylate kinase, GMP k 93.2 0.043 1.5E-06 57.3 3.2 25 817-841 5-29 (198)
401 2og2_A Putative signal recogni 93.2 0.096 3.3E-06 60.2 6.5 25 218-242 157-181 (359)
402 1zu4_A FTSY; GTPase, signal re 93.1 0.2 6.9E-06 56.5 8.9 35 816-850 105-142 (320)
403 2qmh_A HPR kinase/phosphorylas 93.0 0.035 1.2E-06 58.6 2.3 36 218-254 34-69 (205)
404 1ex7_A Guanylate kinase; subst 93.0 0.051 1.8E-06 56.7 3.5 27 220-246 3-29 (186)
405 1ex7_A Guanylate kinase; subst 92.9 0.06 2.1E-06 56.1 3.9 26 819-844 4-29 (186)
406 1znw_A Guanylate kinase, GMP k 92.9 0.057 1.9E-06 56.6 3.7 25 219-243 21-45 (207)
407 2w0m_A SSO2452; RECA, SSPF, un 92.8 0.091 3.1E-06 55.0 5.2 24 219-242 24-47 (235)
408 2yhs_A FTSY, cell division pro 92.8 0.12 4E-06 61.7 6.6 25 218-242 293-317 (503)
409 3gmt_A Adenylate kinase; ssgci 92.7 0.065 2.2E-06 57.8 4.0 29 219-247 9-37 (230)
410 2qmh_A HPR kinase/phosphorylas 92.7 0.045 1.5E-06 57.8 2.6 36 816-852 34-69 (205)
411 2cvh_A DNA repair and recombin 92.7 0.083 2.8E-06 55.0 4.8 34 219-252 21-54 (220)
412 1znw_A Guanylate kinase, GMP k 92.7 0.063 2.2E-06 56.2 3.8 25 817-841 21-45 (207)
413 3kl4_A SRP54, signal recogniti 92.7 0.17 5.9E-06 59.5 7.8 36 816-851 97-135 (433)
414 2cvh_A DNA repair and recombin 92.7 0.1 3.4E-06 54.4 5.3 34 817-850 21-54 (220)
415 1z6g_A Guanylate kinase; struc 92.7 0.057 1.9E-06 57.3 3.4 24 219-242 24-47 (218)
416 2yhs_A FTSY, cell division pro 92.5 0.17 5.8E-06 60.4 7.5 25 816-840 293-317 (503)
417 1z6g_A Guanylate kinase; struc 92.4 0.067 2.3E-06 56.8 3.6 24 817-840 24-47 (218)
418 3gmt_A Adenylate kinase; ssgci 92.4 0.082 2.8E-06 57.0 4.2 29 817-845 9-37 (230)
419 3dm5_A SRP54, signal recogniti 92.4 0.31 1.1E-05 57.5 9.4 37 816-852 100-139 (443)
420 1gtv_A TMK, thymidylate kinase 92.4 0.033 1.1E-06 58.0 1.1 24 220-243 2-25 (214)
421 2w0m_A SSO2452; RECA, SSPF, un 92.3 0.13 4.4E-06 53.8 5.6 24 817-840 24-47 (235)
422 1a7j_A Phosphoribulokinase; tr 92.3 0.072 2.4E-06 59.3 3.8 37 219-255 6-45 (290)
423 1odf_A YGR205W, hypothetical 3 92.3 0.15 5.3E-06 56.7 6.4 26 816-841 31-56 (290)
424 4gp7_A Metallophosphoesterase; 92.3 0.068 2.3E-06 54.4 3.3 21 816-836 9-29 (171)
425 4a74_A DNA repair and recombin 92.3 0.072 2.5E-06 55.9 3.5 24 219-242 26-49 (231)
426 4gp7_A Metallophosphoesterase; 92.2 0.08 2.7E-06 53.8 3.7 20 219-238 10-29 (171)
427 1rj9_A FTSY, signal recognitio 92.2 0.089 3E-06 59.1 4.3 25 218-242 102-126 (304)
428 1gtv_A TMK, thymidylate kinase 92.1 0.042 1.4E-06 57.2 1.5 25 818-842 2-26 (214)
429 4a74_A DNA repair and recombin 92.1 0.071 2.4E-06 55.9 3.3 24 817-840 26-49 (231)
430 1j8m_F SRP54, signal recogniti 92.0 0.27 9.1E-06 55.0 7.9 35 218-252 98-135 (297)
431 2eyu_A Twitching motility prot 92.0 0.086 2.9E-06 57.8 3.8 24 219-242 26-49 (261)
432 1sky_E F1-ATPase, F1-ATP synth 92.0 0.62 2.1E-05 55.2 11.3 25 218-242 151-175 (473)
433 4eaq_A DTMP kinase, thymidylat 92.0 0.089 3E-06 56.4 3.9 27 218-244 26-52 (229)
434 1odf_A YGR205W, hypothetical 3 92.0 0.17 5.8E-06 56.3 6.2 26 218-243 31-56 (290)
435 2px0_A Flagellar biosynthesis 91.9 0.2 6.8E-06 55.9 6.8 36 816-851 105-144 (296)
436 1htw_A HI0065; nucleotide-bind 91.8 0.099 3.4E-06 52.9 3.8 24 219-242 34-57 (158)
437 1n0w_A DNA repair protein RAD5 91.8 0.1 3.4E-06 55.3 4.0 24 219-242 25-48 (243)
438 2ehv_A Hypothetical protein PH 91.8 0.084 2.9E-06 56.1 3.4 23 218-240 30-52 (251)
439 1n0w_A DNA repair protein RAD5 91.7 0.13 4.3E-06 54.5 4.7 23 817-839 25-47 (243)
440 1rj9_A FTSY, signal recognitio 91.7 0.11 3.6E-06 58.4 4.2 37 816-852 102-140 (304)
441 3lnc_A Guanylate kinase, GMP k 91.7 0.065 2.2E-06 57.0 2.4 25 219-243 28-53 (231)
442 2jeo_A Uridine-cytidine kinase 91.7 0.1 3.4E-06 56.2 3.9 27 219-245 26-52 (245)
443 2dr3_A UPF0273 protein PH0284; 91.6 0.14 4.8E-06 54.2 5.0 33 219-251 24-59 (247)
444 4eaq_A DTMP kinase, thymidylat 91.6 0.1 3.4E-06 56.0 3.8 27 816-842 26-52 (229)
445 1htw_A HI0065; nucleotide-bind 91.6 0.11 3.9E-06 52.5 4.0 24 817-840 34-57 (158)
446 3hdt_A Putative kinase; struct 91.6 0.11 3.8E-06 55.6 4.1 29 817-845 15-43 (223)
447 1s96_A Guanylate kinase, GMP k 91.6 0.1 3.5E-06 55.7 3.7 25 219-243 17-41 (219)
448 2ehv_A Hypothetical protein PH 91.5 0.094 3.2E-06 55.7 3.5 21 817-837 31-51 (251)
449 2eyu_A Twitching motility prot 91.5 0.1 3.5E-06 57.1 3.8 25 817-841 26-50 (261)
450 1a7j_A Phosphoribulokinase; tr 91.5 0.094 3.2E-06 58.3 3.5 37 817-853 6-45 (290)
451 2i3b_A HCR-ntpase, human cance 91.4 0.096 3.3E-06 54.6 3.2 24 219-242 2-25 (189)
452 1s96_A Guanylate kinase, GMP k 91.3 0.12 3.9E-06 55.3 3.8 25 817-841 17-41 (219)
453 3tqc_A Pantothenate kinase; bi 91.2 0.22 7.6E-06 56.3 6.3 26 816-841 92-117 (321)
454 1m8p_A Sulfate adenylyltransfe 91.2 0.11 3.9E-06 63.2 4.2 36 218-253 396-435 (573)
455 2jeo_A Uridine-cytidine kinase 91.2 0.12 4.1E-06 55.6 4.0 27 817-843 26-52 (245)
456 1g5t_A COB(I)alamin adenosyltr 91.2 0.59 2E-05 49.1 9.0 32 219-250 29-63 (196)
457 3hdt_A Putative kinase; struct 91.2 0.11 3.7E-06 55.7 3.4 29 219-247 15-43 (223)
458 3lnc_A Guanylate kinase, GMP k 91.2 0.077 2.6E-06 56.4 2.3 25 817-841 28-53 (231)
459 2i3b_A HCR-ntpase, human cance 91.1 0.11 3.6E-06 54.3 3.2 23 818-840 3-25 (189)
460 4edh_A DTMP kinase, thymidylat 91.1 0.15 5.1E-06 54.1 4.5 25 219-243 7-31 (213)
461 2v9p_A Replication protein E1; 91.1 0.12 4.2E-06 58.0 3.9 24 219-242 127-150 (305)
462 1bif_A 6-phosphofructo-2-kinas 91.1 0.089 3.1E-06 62.5 2.9 30 218-247 39-68 (469)
463 2axn_A 6-phosphofructo-2-kinas 91.1 0.12 4.1E-06 62.3 4.0 29 218-246 35-63 (520)
464 3aez_A Pantothenate kinase; tr 91.0 0.12 4E-06 58.3 3.6 26 218-243 90-115 (312)
465 2dr3_A UPF0273 protein PH0284; 90.9 0.22 7.5E-06 52.7 5.6 33 817-849 24-59 (247)
466 2j37_W Signal recognition part 90.9 0.33 1.1E-05 58.3 7.5 36 217-252 100-138 (504)
467 3tqc_A Pantothenate kinase; bi 90.8 0.12 4.2E-06 58.4 3.7 26 218-243 92-117 (321)
468 3hr8_A Protein RECA; alpha and 90.8 0.17 5.7E-06 58.1 4.7 35 219-253 62-99 (356)
469 2iut_A DNA translocase FTSK; n 90.8 1.7 5.8E-05 52.7 13.6 75 419-516 343-420 (574)
470 1m8p_A Sulfate adenylyltransfe 90.7 0.15 5.1E-06 62.2 4.5 36 816-851 396-435 (573)
471 2ffh_A Protein (FFH); SRP54, s 90.7 0.41 1.4E-05 56.2 8.0 35 217-251 97-134 (425)
472 1j8m_F SRP54, signal recogniti 90.6 0.56 1.9E-05 52.3 8.7 36 816-851 98-136 (297)
473 2axn_A 6-phosphofructo-2-kinas 90.6 0.14 4.8E-06 61.7 4.0 37 816-852 35-74 (520)
474 3jvv_A Twitching mobility prot 90.6 0.13 4.6E-06 58.9 3.7 24 219-242 124-147 (356)
475 3aez_A Pantothenate kinase; tr 90.5 0.14 4.7E-06 57.7 3.7 26 816-841 90-115 (312)
476 2v9p_A Replication protein E1; 90.5 0.15 5.1E-06 57.3 3.9 24 817-840 127-150 (305)
477 1sq5_A Pantothenate kinase; P- 90.2 0.12 4.2E-06 57.8 3.0 26 816-841 80-105 (308)
478 1nrj_B SR-beta, signal recogni 90.2 0.16 5.5E-06 52.8 3.7 25 218-242 12-36 (218)
479 2j37_W Signal recognition part 90.2 0.64 2.2E-05 55.7 9.2 36 816-851 101-139 (504)
480 3hr8_A Protein RECA; alpha and 90.2 0.24 8.1E-06 56.9 5.3 35 817-851 62-99 (356)
481 2ewv_A Twitching motility prot 90.2 0.15 5.2E-06 58.7 3.7 24 219-242 137-160 (372)
482 3jvv_A Twitching mobility prot 90.1 0.16 5.4E-06 58.3 3.7 25 817-841 124-148 (356)
483 2ocp_A DGK, deoxyguanosine kin 90.0 0.15 5.2E-06 54.5 3.3 26 218-243 2-27 (241)
484 1bif_A 6-phosphofructo-2-kinas 90.0 0.11 3.6E-06 61.8 2.3 29 816-844 39-67 (469)
485 2ffh_A Protein (FFH); SRP54, s 90.0 0.71 2.4E-05 54.2 9.2 34 816-849 98-134 (425)
486 2wsm_A Hydrogenase expression/ 89.9 0.23 8E-06 51.7 4.6 25 219-243 31-55 (221)
487 1sq5_A Pantothenate kinase; P- 89.8 0.18 6.2E-06 56.4 3.9 26 218-243 80-105 (308)
488 2xxa_A Signal recognition part 89.8 0.53 1.8E-05 55.4 8.0 38 217-254 99-140 (433)
489 1cr0_A DNA primase/helicase; R 89.8 0.17 5.9E-06 55.8 3.7 24 219-242 36-59 (296)
490 3kta_A Chromosome segregation 89.8 0.19 6.3E-06 51.1 3.6 26 218-243 26-51 (182)
491 2ewv_A Twitching motility prot 89.6 0.19 6.4E-06 58.0 3.9 25 817-841 137-161 (372)
492 4b3f_X DNA-binding protein smu 89.6 0.33 1.1E-05 59.9 6.4 24 219-242 206-230 (646)
493 1g8f_A Sulfate adenylyltransfe 89.6 0.16 5.4E-06 61.0 3.4 27 218-244 395-421 (511)
494 1nlf_A Regulatory protein REPA 89.6 0.18 6.2E-06 55.2 3.6 24 219-242 31-54 (279)
495 2oap_1 GSPE-2, type II secreti 89.6 0.17 5.6E-06 61.0 3.5 32 219-250 261-294 (511)
496 3b85_A Phosphate starvation-in 89.5 0.18 6.1E-06 53.4 3.3 23 219-241 23-45 (208)
497 2r8r_A Sensor protein; KDPD, P 89.5 0.27 9.2E-06 52.8 4.7 33 219-251 7-42 (228)
498 2gza_A Type IV secretion syste 89.4 0.15 5.3E-06 58.4 2.9 25 219-243 176-200 (361)
499 2ocp_A DGK, deoxyguanosine kin 89.3 0.21 7.2E-06 53.4 3.7 26 816-841 2-27 (241)
500 2zr9_A Protein RECA, recombina 89.1 0.28 9.6E-06 56.0 4.9 34 219-252 62-98 (349)
No 1
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=100.00 E-value=2.2e-64 Score=593.41 Aligned_cols=435 Identities=61% Similarity=0.966 Sum_probs=312.7
Q ss_pred hhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 171 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 171 ~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
.++|.++.+.|+++|+||+++|+.+..++.++|++.++....+...+++++||+||||||||++|+++|+.++.+|+.++
T Consensus 3 ~~tP~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 3 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 36899999999999999999999999999999999988777665545689999999999999999999999999999999
Q ss_pred ccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCc--CCCCccccCCcCcchhhHHH
Q psy2392 251 ATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKE--KSNLDTDFNNENNNISTRQI 328 (1165)
Q Consensus 251 ~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~~~~~~~~~~~~~~ 328 (1165)
++.+.++||+|.+.+..+++++..+......++...+.......+++++++.|++.-. ..+..+ .+....+.+.
T Consensus 83 ~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v----~a~~TN~~~~ 158 (444)
T 1g41_A 83 ATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVEN----HDSHSSTRQA 158 (444)
T ss_dssp GGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------
T ss_pred chhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhcccccccc----ccccccCHHH
Confidence 9999999999998789999999999888888888888888899999999999986310 000000 0000234677
Q ss_pred HHHHhhcCCCCCcEEEEEecCCC-CcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChh
Q psy2392 329 FRKRLREGALDNKEIEIELNDTG-PHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNED 407 (1165)
Q Consensus 329 ~~~~~~~g~l~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (1165)
|...++.|.++|++|+|.+|+.. +.+++++.+||.+|+.++..||+++.+++++.++|+|+||+++|.++|++++++++
T Consensus 159 ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~ 238 (444)
T 1g41_A 159 FRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPE 238 (444)
T ss_dssp -------------------------------------------------------------------CCGGGSCSSCCHH
T ss_pred HHHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHH
Confidence 88899999999999999998875 67889989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCC
Q psy2392 408 EIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS 487 (1165)
Q Consensus 408 ~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~ 487 (1165)
+++++|+..+++++|+|+|||||++.+..+ +++|+|++|||++||+++||+.++++|+.++|+||+|||+|||+.++|+
T Consensus 239 ~~~~~ai~~ae~~~il~~DEidki~~~~~~-~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~ 317 (444)
T 1g41_A 239 ELKQKAIDAVEQNGIVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPS 317 (444)
T ss_dssp HHHHHHHHHHHHHCEEEEETGGGGSCCSSC-SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGG
T ss_pred HHHHHHHHHhccCCeeeHHHHHHHhhccCC-CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChh
Confidence 999999999999999999999999987553 6789999999999999999999999999999999999999999999999
Q ss_pred CCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhH
Q psy2392 488 DLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLY 567 (1165)
Q Consensus 488 ~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~ 567 (1165)
+++|||+||||++|+|++|+.+|+.+|+++|++.+++||.++++.+|+++.|+++|+++|++.|+++|..+.++|||+|+
T Consensus 318 dlipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~ 397 (444)
T 1g41_A 318 DLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLH 397 (444)
T ss_dssp GSCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHH
T ss_pred hcchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred HHHHHHHHHhhcccCCCe---eEEcccccccccccCcccccccccc
Q psy2392 568 TAMEKLLEEVSFNSNNIS---LLVDADYVNSRLGDLSINEDLSRYD 610 (1165)
Q Consensus 568 ~~ie~~l~~~~~~~~~~~---~~i~~~~v~~~~~~~~~~~dls~~i 610 (1165)
++||+++++++|++|+.. ++||.++|++.+++.+++.||||||
T Consensus 398 ~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~~~dl~~~~ 443 (444)
T 1g41_A 398 TVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVENEDLSRFI 443 (444)
T ss_dssp HHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcCccccCCChhccc
Confidence 999999999999998643 8999999999999999999999997
No 2
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=100.00 E-value=1.6e-63 Score=585.99 Aligned_cols=389 Identities=62% Similarity=0.971 Sum_probs=269.7
Q ss_pred hhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 769 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 769 ~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
.++|.++.+.|+++|+||+++++.+..++..+|++.++....+....++++||+||||||||++|+++|+.++.+|+.++
T Consensus 3 ~~tP~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 3 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 46899999999999999999999999999999999888776655445789999999999999999999999999999999
Q ss_pred cCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCc--ccc-hhhHH
Q psy2392 849 ATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNE--NNN-ISTRQ 925 (1165)
Q Consensus 849 ~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~--~~~-~~~r~ 925 (1165)
++.+.++||+|.+.+..++++|..+....+.+.+..++....+.+++++++.||+.- ++.++.. ... .++++
T Consensus 83 ~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~-----dg~~~~~~v~a~~TN~~~ 157 (444)
T 1g41_A 83 ATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPA-----KNQWGEVENHDSHSSTRQ 157 (444)
T ss_dssp GGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------
T ss_pred chhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHh-----hccccccccccccccCHH
Confidence 999999999998778899999999998888888888888888899999999999752 2111110 011 23455
Q ss_pred HHHHhhccCCCCCeEEEEEecCCC-CcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCH
Q psy2392 926 IFRKRLREGALDNKEIEIELNDTG-PHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNE 1004 (1165)
Q Consensus 926 ~~~~~l~~g~ld~r~v~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~ 1004 (1165)
.+..+|+.|.++|+.|+|++|+.. ++++||+++||++|..+++.||+.+.+++++++++||++|+++|.++|+++++|+
T Consensus 158 ~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~ 237 (444)
T 1g41_A 158 AFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINP 237 (444)
T ss_dssp --------------------------------------------------------------------CCGGGSCSSCCH
T ss_pred HHHHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCH
Confidence 667777777777899999999986 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCC
Q psy2392 1005 DEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKP 1084 (1165)
Q Consensus 1005 ~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p 1084 (1165)
+.+.+.|+++++++||+|+||||||+..+++ ++.|+|+||||++||+++||++++++|+.++|+||||||+||||.++|
T Consensus 238 ~~~~~~ai~~ae~~~il~~DEidki~~~~~~-~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~ 316 (444)
T 1g41_A 238 EELKQKAIDAVEQNGIVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARP 316 (444)
T ss_dssp HHHHHHHHHHHHHHCEEEEETGGGGSCCSSC-SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCG
T ss_pred HHHHHHHHHHhccCCeeeHHHHHHHhhccCC-CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCCh
Confidence 9999999999999999999999999987654 678999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCceeeccc
Q psy2392 1085 SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIVIIY 1163 (1165)
Q Consensus 1085 ~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~nigar~ 1163 (1165)
+|++|||+||||++|+|++|+.+|+.+|+++|++++++||.++++.+|++|.||++|+++||+.|+++|..++|+|||.
T Consensus 317 ~dlipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~ 395 (444)
T 1g41_A 317 SDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARR 395 (444)
T ss_dssp GGSCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGH
T ss_pred hhcchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999994
No 3
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=3.1e-41 Score=425.96 Aligned_cols=348 Identities=21% Similarity=0.332 Sum_probs=273.3
Q ss_pred cCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHH
Q psy2392 626 RGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG-----NLMRASVELAKEW 700 (1165)
Q Consensus 626 RG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~-----~aL~aav~LS~ry 700 (1165)
+|.++|||+||..+|+++++.|+++.|| |+ .+. +.+|+.+++..||+++...|+.+|+ +++.+++.++.+|
T Consensus 313 ~~~~~~I~at~~~~~~~~~~~d~aL~~R--f~-~i~-v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~ 388 (758)
T 1r6b_X 313 SGKIRVIGSTTYQEFSNIFEKDRALARR--FQ-KID-ITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKY 388 (758)
T ss_dssp SCCCEEEEEECHHHHHCCCCCTTSSGGG--EE-EEE-CCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCchHHhhhhhcCHHHHhC--ce-EEE-cCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh
Confidence 4567899999999999999999999999 99 555 9999999999999999999999998 8999999999999
Q ss_pred hcccccchH--HHHhhhhhhhhhhhhcCCCCccCccccccccccccccHHHHHHHhhhccCCChHHH-HHhhhHHHHHHH
Q psy2392 701 RNDRTLRRL--EAMLLTANRETTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEI-IKKSLVIAEIVS 777 (1165)
Q Consensus 701 i~~R~lPDk--dlid~a~a~~~~~~~s~~~~~~~~~~~i~~i~~~~~~~~~~a~~l~~~t~~~~~~i-~~~~~~~~~l~~ 777 (1165)
+.++++||+ ++++.+++........ .....+....++.++..++++++..+ ..+...+..+.+
T Consensus 389 i~~~~lp~~~i~lld~a~~~~~~~~~~--------------~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~ 454 (758)
T 1r6b_X 389 INDRHLPDKAIDVIDEAGARARLMPVS--------------KRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGD 454 (758)
T ss_dssp CTTSCTTHHHHHHHHHHHHHHHHSSSC--------------CCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHH
T ss_pred cccccCchHHHHHHHHHHHHHhccccc--------------ccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHH
Confidence 999999995 5577776655441100 01122344566777778888776544 334567788999
Q ss_pred HhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccc--
Q psy2392 778 ELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEV-- 855 (1165)
Q Consensus 778 ~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~-- 855 (1165)
.|.+.|+||+++++.+..++... +.|+..+.+| .+++||+||||||||++|+++|+.++.+|++++|+++.+.
T Consensus 455 ~l~~~v~g~~~~~~~l~~~i~~~--~~g~~~~~~p---~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~ 529 (758)
T 1r6b_X 455 RLKMLVFGQDKAIEALTEAIKMA--RAGLGHEHKP---VGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHT 529 (758)
T ss_dssp HHTTTSCSCHHHHHHHHHHHHHH--HTTCSCTTSC---SEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSC
T ss_pred HHHhhccCHHHHHHHHHHHHHHH--hcccCCCCCC---ceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhh
Confidence 99999999999999999988755 6676655444 4789999999999999999999999999999999998763
Q ss_pred ---------cccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHH
Q psy2392 856 ---------GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQI 926 (1165)
Q Consensus 856 ---------GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~ 926 (1165)
||+|++.++.+.+.
T Consensus 530 ~~~l~g~~~g~~g~~~~~~l~~~--------------------------------------------------------- 552 (758)
T 1r6b_X 530 VSRLIGAPPGYVGFDQGGLLTDA--------------------------------------------------------- 552 (758)
T ss_dssp CSSSCCCCSCSHHHHHTTHHHHH---------------------------------------------------------
T ss_pred HhhhcCCCCCCcCccccchHHHH---------------------------------------------------------
Confidence 34443322221111
Q ss_pred HHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHH
Q psy2392 927 FRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDE 1006 (1165)
Q Consensus 927 ~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~ 1006 (1165)
T Consensus 553 -------------------------------------------------------------------------------- 552 (758)
T 1r6b_X 553 -------------------------------------------------------------------------------- 552 (758)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee-eccCceEEEEecCCCCCCC--
Q psy2392 1007 IQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLAK-- 1083 (1165)
Q Consensus 1007 ~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~-~~~t~~ilfI~~gaf~~~~-- 1083 (1165)
+.. ...+|+||||||++... +|+.||.++|...++...| .++..|+.||++.+.....
T Consensus 553 -----~~~-~~~~vl~lDEi~~~~~~-------------~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~ 613 (758)
T 1r6b_X 553 -----VIK-HPHAVLLLDEIEKAHPD-------------VFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETE 613 (758)
T ss_dssp -----HHH-CSSEEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC---
T ss_pred -----HHh-CCCcEEEEeCccccCHH-------------HHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhh
Confidence 111 15789999999998654 9999999999766554323 4566788899886532100
Q ss_pred ----------C---------CCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHH
Q psy2392 1084 ----------P---------SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQR 1144 (1165)
Q Consensus 1084 ----------p---------~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ 1144 (1165)
+ ..|.|+|++||+.+|.|+||+.+++.+|++ ..+.++...+...++.+.|+++++++
T Consensus 614 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~----~~l~~~~~~~~~~~~~~~~~~~a~~~ 689 (758)
T 1r6b_X 614 RKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVD----KFIVELQVQLDQKGVSLEVSQEARNW 689 (758)
T ss_dssp --------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHH----HHHHHHHHHHHHTTEEEEECHHHHHH
T ss_pred hcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHH----HHHHHHHHHHHHCCcEEEeCHHHHHH
Confidence 0 057899999999999999999999999999 66777777788889999999999999
Q ss_pred HHHHHhccCcCC
Q psy2392 1145 LAEIAYCINERT 1156 (1165)
Q Consensus 1145 ia~~a~~~~~~~ 1156 (1165)
|++.++..|.++
T Consensus 690 l~~~~~~~~~g~ 701 (758)
T 1r6b_X 690 LAEKGYDRAMGA 701 (758)
T ss_dssp HHHHHCBTTTBT
T ss_pred HHHhCCCcCCCc
Confidence 999999984443
No 4
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=3.9e-40 Score=415.90 Aligned_cols=361 Identities=21% Similarity=0.310 Sum_probs=261.4
Q ss_pred cCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHH
Q psy2392 626 RGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG-----NLMRASVELAKEW 700 (1165)
Q Consensus 626 RG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~-----~aL~aav~LS~ry 700 (1165)
+|+++||||||..+|+++++.|+|+.|| |+ .|. +.+|+.++...||+++...|+.||+ +++.+++.++.+|
T Consensus 289 ~~~v~~I~at~~~~~~~~~~~d~al~rR--f~-~i~-v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~ 364 (758)
T 3pxi_A 289 RGELQCIGATTLDEYRKYIEKDAALERR--FQ-PIQ-VDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRY 364 (758)
T ss_dssp SSSCEEEEECCTTTTHHHHTTCSHHHHS--EE-EEE-CCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHS
T ss_pred cCCEEEEeCCChHHHHHHhhccHHHHhh--Cc-EEE-eCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc
Confidence 4567899999999999999999999999 98 554 9999999999999999999999998 8999999999999
Q ss_pred hcccccchH--HHHhhhhhhhhhhhhcCCCCccCccccccc---------------------------------------
Q psy2392 701 RNDRTLRRL--EAMLLTANRETTLIITGNGDVLEPENGIGA--------------------------------------- 739 (1165)
Q Consensus 701 i~~R~lPDk--dlid~a~a~~~~~~~s~~~~~~~~~~~i~~--------------------------------------- 739 (1165)
++++++|++ ++++.+++.......+.+......+..+..
T Consensus 365 i~~~~~p~~ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 444 (758)
T 3pxi_A 365 ISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWK 444 (758)
T ss_dssp SCCSCTTHHHHHHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGG
T ss_pred cccCcCCcHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999996 457777776654322211111111110000
Q ss_pred ----cccccccHHHHHHHhhhccCCChHHHHH-hhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCC
Q psy2392 740 ----IGSGGIFAQSAAKALQENTELMPDEIIK-KSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEI 814 (1165)
Q Consensus 740 ----i~~~~~~~~~~a~~l~~~t~~~~~~i~~-~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~ 814 (1165)
.....+....++..+..+++++...+.. +......+...|.+.|+||+.+++.+..++... +.++..+.+|
T Consensus 445 ~~~~~~~~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~--~~~~~~~~~p-- 520 (758)
T 3pxi_A 445 EKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRA--RAGLKDPKRP-- 520 (758)
T ss_dssp HHHHCC---CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHH--TTTCSCTTSC--
T ss_pred HhhcccCcccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHH--HcccCCCCCC--
Confidence 0112233345677777788776665532 344556788889999999999999999999865 5555544433
Q ss_pred CCceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHH
Q psy2392 815 TPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAED 891 (1165)
Q Consensus 815 ~~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~ 891 (1165)
.+++||+||||||||++|+++|+.+ +.+|+.+||+++.+. +... ++.+.+
T Consensus 521 -~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~-~~~~--~~~l~~----------------------- 573 (758)
T 3pxi_A 521 -IGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK-HSTS--GGQLTE----------------------- 573 (758)
T ss_dssp -SEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS-CCCC-----CHH-----------------------
T ss_pred -ceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc-cccc--cchhhH-----------------------
Confidence 3689999999999999999999998 689999999998765 2221 011111
Q ss_pred HHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHH
Q psy2392 892 AAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMF 971 (1165)
Q Consensus 892 ~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1165)
T Consensus 574 -------------------------------------------------------------------------------- 573 (758)
T 3pxi_A 574 -------------------------------------------------------------------------------- 573 (758)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhcc
Q psy2392 972 SVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLL 1051 (1165)
Q Consensus 972 ~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL 1051 (1165)
++.. ...+|+||||||++... +|..||
T Consensus 574 ---------------------------------------~~~~-~~~~vl~lDEi~~~~~~-------------~~~~Ll 600 (758)
T 3pxi_A 574 ---------------------------------------KVRR-KPYSVVLLDAIEKAHPD-------------VFNILL 600 (758)
T ss_dssp ---------------------------------------HHHH-CSSSEEEEECGGGSCHH-------------HHHHHH
T ss_pred ---------------------------------------HHHh-CCCeEEEEeCccccCHH-------------HHHHHH
Confidence 0000 15689999999998654 999999
Q ss_pred ccccCccceeeee-eccCceEEEEecCCCCCCCC--------CCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHH
Q psy2392 1052 PLVEGTTVNTKYG-IIKTDHILFIASGAFHLAKP--------SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTK 1122 (1165)
Q Consensus 1052 ~~~Eg~~v~~k~~-~~~t~~ilfI~~gaf~~~~p--------~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~ 1122 (1165)
.++|.+.+..-.| .++..|+.||+++....... ..|.|+|.+||+..|.|.||+.+++.+|+. ..+.
T Consensus 601 ~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~----~~l~ 676 (758)
T 3pxi_A 601 QVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVS----LMSD 676 (758)
T ss_dssp HHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHH----HHHH
T ss_pred HHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHH----HHHH
Confidence 9999866544222 45667888888875321110 018899999999999999999999999999 5667
Q ss_pred HHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCce
Q psy2392 1123 QYEALLATEGIKIEFVDDGIQRLAEIAYCINERTEN 1158 (1165)
Q Consensus 1123 q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~n 1158 (1165)
++...+...++.+.|+++++++|++.+|+...+++.
T Consensus 677 ~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~ 712 (758)
T 3pxi_A 677 QLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARP 712 (758)
T ss_dssp HHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTT
T ss_pred HHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChH
Confidence 777777777999999999999999999988655543
No 5
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=5.3e-40 Score=414.65 Aligned_cols=380 Identities=20% Similarity=0.336 Sum_probs=307.2
Q ss_pred ccccccCcccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHHH
Q psy2392 9 SAKDSGMEKFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEK 86 (1165)
Q Consensus 9 ~~~~~~~~~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~ 86 (1165)
+++....+.+++.|+| .|++|+++|||+||+.+|+++++.|++|.|| |+ .| .|++|+.+++..||+++...|+.
T Consensus 292 ~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~R--f~-~i-~v~~p~~~e~~~il~~l~~~~~~ 367 (758)
T 1r6b_X 292 GAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARR--FQ-KI-DITEPSIEETVQIINGLKPKYEA 367 (758)
T ss_dssp TSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGG--EE-EE-ECCCCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHHHhC--ce-EE-EcCCCCHHHHHHHHHHHHHHHHH
Confidence 3443334567788888 8999999999999999999999999999999 99 55 59999999999999999999999
Q ss_pred Hhh-----HHHHHHHHHHHhhcCCCCchhH--HHHHhhhhhhhhhhccCCCCccCcccccccccccchhhHHHHHHhhhc
Q psy2392 87 HQG-----NLMRASVELAKEWRNDRTLRRL--EAMLLTANRETTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQEN 159 (1165)
Q Consensus 87 ~h~-----~al~~~v~ls~rYi~~r~lPDk--alld~a~a~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~va~~l~~~ 159 (1165)
+|+ +++.+++.++.+|++++++||+ ++++++|+..+.. +.. . ....+....+++++..|
T Consensus 368 ~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~----~~~-----~-----~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 368 HHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLM----PVS-----K-----RKKTVNVADIESVVARI 433 (758)
T ss_dssp HHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHS----SSC-----C-----CCCSCCHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcc----ccc-----c-----cCCccCHHHHHHHHHHh
Confidence 998 9999999999999999999996 5688888777652 100 0 00112233667778888
Q ss_pred cccCchhhhhh-hhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHH
Q psy2392 160 TELMPDEIIKK-SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRL 238 (1165)
Q Consensus 160 t~l~~~~i~~~-~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~l 238 (1165)
+++|+..+..+ ...+..+.+.|.+.|+||+++++.+..++... +.|+.++.+|. +++||+||||||||++|+++
T Consensus 434 ~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~--~~g~~~~~~p~---~~~ll~G~~GtGKT~la~~l 508 (758)
T 1r6b_X 434 ARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMA--RAGLGHEHKPV---GSFLFAGPTGVGKTEVTVQL 508 (758)
T ss_dssp SCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHH--HTTCSCTTSCS---EEEEEECSTTSSHHHHHHHH
T ss_pred cCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHH--hcccCCCCCCc---eEEEEECCCCCcHHHHHHHH
Confidence 99998776543 36788899999999999999999999998765 67777666554 79999999999999999999
Q ss_pred HHHhCCCceEEecccccc-----------ccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCC
Q psy2392 239 AKLSNAPFIKIEATKFTE-----------VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSK 307 (1165)
Q Consensus 239 A~~l~~~~i~ld~s~~~~-----------~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 307 (1165)
|+.++.+|++++|+++.+ +||+|++.++.+.+.+
T Consensus 509 a~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~----------------------------------- 553 (758)
T 1r6b_X 509 SKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAV----------------------------------- 553 (758)
T ss_dssp HHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHH-----------------------------------
T ss_pred HHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHH-----------------------------------
Confidence 999999999999999865 3555554333222222
Q ss_pred cCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceee
Q psy2392 308 EKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIK 387 (1165)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (1165)
T Consensus 554 -------------------------------------------------------------------------------- 553 (758)
T 1r6b_X 554 -------------------------------------------------------------------------------- 553 (758)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-
Q psy2392 388 IREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG- 466 (1165)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~- 466 (1165)
.. .+++||||||||++++. +|+.||+++|.+.++...|
T Consensus 554 ---------------------------~~-~~~~vl~lDEi~~~~~~-------------~~~~Ll~~le~~~~~~~~g~ 592 (758)
T 1r6b_X 554 ---------------------------IK-HPHAVLLLDEIEKAHPD-------------VFNILLQVMDNGTLTDNNGR 592 (758)
T ss_dssp ---------------------------HH-CSSEEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEETTTE
T ss_pred ---------------------------Hh-CCCcEEEEeCccccCHH-------------HHHHHHHHhcCcEEEcCCCC
Confidence 11 26899999999999765 8889999999776654333
Q ss_pred eecCceEEEEEeCCcccCC------------C---------CCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHH
Q psy2392 467 IIKTDHILFIASGAFHLAK------------P---------SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQ 525 (1165)
Q Consensus 467 ~~~t~~ilfI~~gaf~~~~------------p---------~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~ 525 (1165)
.++..|++||++++..... + ..|.|+|++||+.+|.|++|+.+++.+|+ ...+.+
T Consensus 593 ~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~----~~~l~~ 668 (758)
T 1r6b_X 593 KADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVV----DKFIVE 668 (758)
T ss_dssp EEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHH----HHHHHH
T ss_pred EEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHH----HHHHHH
Confidence 5677899999986532100 0 15889999999999999999999999999 456666
Q ss_pred HHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 526 YEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 526 ~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
....+...++.+.++++++++|++.++. .++|||.|+++|++.+..
T Consensus 669 ~~~~~~~~~~~~~~~~~a~~~l~~~~~~-----~~~g~R~l~~~i~~~~~~ 714 (758)
T 1r6b_X 669 LQVQLDQKGVSLEVSQEARNWLAEKGYD-----RAMGARPMARVIQDNLKK 714 (758)
T ss_dssp HHHHHHHTTEEEEECHHHHHHHHHHHCB-----TTTBTTTHHHHHHHHHTH
T ss_pred HHHHHHHCCcEEEeCHHHHHHHHHhCCC-----cCCCchHHHHHHHHHHHH
Confidence 7777778889999999999999999987 589999999999998875
No 6
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=1e-39 Score=412.11 Aligned_cols=387 Identities=22% Similarity=0.328 Sum_probs=284.7
Q ss_pred cccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHHHHhh----
Q psy2392 16 EKFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG---- 89 (1165)
Q Consensus 16 ~~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~~h~---- 89 (1165)
+.+|+.|+| +|++|+++||||||+.+|+++++.|+||.|| |+ . +.|++|+.++...||+++..+|+.||+
T Consensus 275 ~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rR--f~-~-i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~ 350 (758)
T 3pxi_A 275 AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERR--FQ-P-IQVDQPSVDESIQILQGLRDRYEAHHRVSIT 350 (758)
T ss_dssp C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHS--EE-E-EECCCCCHHHHHHHHHHTTTTSGGGSSCSCC
T ss_pred CchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhh--Cc-E-EEeCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 456888888 9999999999999999999999999999999 99 4 559999999999999999999999998
Q ss_pred -HHHHHHHHHHHhhcCCCCchhH--HHHHhhhhhhhhhhccCCCCccCccccccccc-----------------------
Q psy2392 90 -NLMRASVELAKEWRNDRTLRRL--EAMLLTANRETTLIITGNGDVLEPENGIGAIG----------------------- 143 (1165)
Q Consensus 90 -~al~~~v~ls~rYi~~r~lPDk--alld~a~a~~~~~~~~~~~~~~~~e~~~~~~~----------------------- 143 (1165)
+++.+++.+|++|++++++||+ ++++.||+..+....+.+.....+++.+.++.
T Consensus 351 ~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 430 (758)
T 3pxi_A 351 DDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQ 430 (758)
T ss_dssp HHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 9999999999999999999997 45899999887653332322222222211110
Q ss_pred --------------------ccchhhHHHHHHhhhccccCchhhhhhh-hHHHHHHHHhcccEecchhhHHHHHHHHHhh
Q psy2392 144 --------------------SGGIFAQSAAKALQENTELMPDEIIKKS-LVIAEIVSELDKYVIGQNRAKRAVAIALRNR 202 (1165)
Q Consensus 144 --------------------~~~~~~~~va~~l~~~t~l~~~~i~~~~-~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~ 202 (1165)
...+....++..+.+|+++|+..+..+. .....+...|.+.|+||+.+++.+..++...
T Consensus 431 ~~~~~l~~~~~~~~~~~~~~~~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~ 510 (758)
T 3pxi_A 431 RLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRA 510 (758)
T ss_dssp HHHHHHHHHHSGGGHHHHCC---CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccCcccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHH
Confidence 0112223566778888998887766543 4556788899999999999999999999865
Q ss_pred hhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccccccccccccchhhHHHHHHHHHhhhh
Q psy2392 203 WRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQT 279 (1165)
Q Consensus 203 ~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~ 279 (1165)
+.++..+.+|. +++||+||||||||++|+++|+.+ +.+|+++||++|.+. +... ++.+.+
T Consensus 511 --~~~~~~~~~p~---~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~-~~~~--~~~l~~--------- 573 (758)
T 3pxi_A 511 --RAGLKDPKRPI---GSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK-HSTS--GGQLTE--------- 573 (758)
T ss_dssp --TTTCSCTTSCS---EEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS-CCCC-----CHH---------
T ss_pred --HcccCCCCCCc---eEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc-cccc--cchhhH---------
Confidence 55665555443 689999999999999999999998 689999999998754 2221 011111
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCC
Q psy2392 280 REFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSP 359 (1165)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~ 359 (1165)
T Consensus 574 -------------------------------------------------------------------------------- 573 (758)
T 3pxi_A 574 -------------------------------------------------------------------------------- 573 (758)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCC
Q psy2392 360 PGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNN 439 (1165)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~ 439 (1165)
++.. .+++||||||||++++.
T Consensus 574 -----------------------------------------------------~~~~-~~~~vl~lDEi~~~~~~----- 594 (758)
T 3pxi_A 574 -----------------------------------------------------KVRR-KPYSVVLLDAIEKAHPD----- 594 (758)
T ss_dssp -----------------------------------------------------HHHH-CSSSEEEEECGGGSCHH-----
T ss_pred -----------------------------------------------------HHHh-CCCeEEEEeCccccCHH-----
Confidence 1111 26789999999999765
Q ss_pred CCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCcccCC--------CCCCchhhhCCCCeeEecCCCCHHH
Q psy2392 440 NTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLAK--------PSDLIPELQGRFPIRVELDSLSISD 510 (1165)
Q Consensus 440 ~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~~~--------p~~l~pel~~R~~~~v~~~~L~~~~ 510 (1165)
+|+.||+++|.+.++...| .++..|+.||+|++..... ...|.|+|++||+..|.|.||+.++
T Consensus 595 --------~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~ 666 (758)
T 3pxi_A 595 --------VFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKH 666 (758)
T ss_dssp --------HHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHH
T ss_pred --------HHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHH
Confidence 8889999999766654332 4567788899886532111 0118999999999999999999999
Q ss_pred HHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhc
Q psy2392 511 FTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSF 579 (1165)
Q Consensus 511 l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~ 579 (1165)
+.+|+. ..+.++...+...++.+.++++++++|++.+|+. .+|||.|+++|++.+.....
T Consensus 667 ~~~i~~----~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~-----~~~~R~L~~~i~~~v~~~l~ 726 (758)
T 3pxi_A 667 LTEIVS----LMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDL-----EYGARPLRRAIQKHVEDRLS 726 (758)
T ss_dssp HHHHHH----HHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCT-----TTTTTTHHHHHHHHTHHHHH
T ss_pred HHHHHH----HHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCC-----CCCChHHHHHHHHHHHHHHH
Confidence 999994 5566666667777999999999999999999884 79999999999998776543
No 7
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=5e-39 Score=410.50 Aligned_cols=368 Identities=23% Similarity=0.332 Sum_probs=262.1
Q ss_pred cCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHH
Q psy2392 626 RGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG-----NLMRASVELAKEW 700 (1165)
Q Consensus 626 RG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~-----~aL~aav~LS~ry 700 (1165)
+|.++|||+||..+|++ ++.|+++.|| |+ .|. +.+|+.+++..||+++...|+.||+ +++.++++++.+|
T Consensus 297 ~~~i~~I~at~~~~~~~-~~~d~aL~rR--f~-~i~-l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~ 371 (854)
T 1qvr_A 297 RGELRLIGATTLDEYRE-IEKDPALERR--FQ-PVY-VDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRY 371 (854)
T ss_dssp TTCCCEEEEECHHHHHH-HTTCTTTCSC--CC-CEE-ECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHH
T ss_pred CCCeEEEEecCchHHhh-hccCHHHHhC--Cc-eEE-eCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhh
Confidence 34577899999999999 9999999999 99 555 9999999999999999999999998 9999999999999
Q ss_pred hcccccchH--HHHhhhhhhhhhhhhcCCCCccCcccc------------------------------------------
Q psy2392 701 RNDRTLRRL--EAMLLTANRETTLIITGNGDVLEPENG------------------------------------------ 736 (1165)
Q Consensus 701 i~~R~lPDk--dlid~a~a~~~~~~~s~~~~~~~~~~~------------------------------------------ 736 (1165)
+++|++|++ ++++++++..+....+.+.........
T Consensus 372 i~~~~lp~kai~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (854)
T 1qvr_A 372 ITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRA 451 (854)
T ss_dssp CCSSCTHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccChHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999996 457777766554211000000000000
Q ss_pred ----------------------------------------------------cc---------ccccccccHHHHHHHhh
Q psy2392 737 ----------------------------------------------------IG---------AIGSGGIFAQSAAKALQ 755 (1165)
Q Consensus 737 ----------------------------------------------------i~---------~i~~~~~~~~~~a~~l~ 755 (1165)
+. ..-...+....++..+.
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~v~ 531 (854)
T 1qvr_A 452 EWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVS 531 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhhhcccccccCCcCHHHHHHHHH
Confidence 00 00012233445666677
Q ss_pred hccCCChHHHHH-hhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHH
Q psy2392 756 ENTELMPDEIIK-KSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIAR 834 (1165)
Q Consensus 756 ~~t~~~~~~i~~-~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk 834 (1165)
.|++++...+.. +..+...+.+.+++.|+||+.+++.+..++... +.|+.++.+| ..++||+||||||||++|+
T Consensus 532 ~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~--~~g~~~~~~p---~~~vLl~Gp~GtGKT~lA~ 606 (854)
T 1qvr_A 532 RWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRA--RAGLKDPNRP---IGSFLFLGPTGVGKTELAK 606 (854)
T ss_dssp TTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHH--GGGCSCSSSC---SEEEEEBSCSSSSHHHHHH
T ss_pred HHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHH--hcccCCCCCC---ceEEEEECCCCCCHHHHHH
Confidence 777765544422 333455677788899999999999999998765 5666655443 4799999999999999999
Q ss_pred HHHHHc---CCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCc
Q psy2392 835 RLAKLS---NAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLD 911 (1165)
Q Consensus 835 ~lA~~l---~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~ 911 (1165)
++++.+ +.+|+.++|+++.+... +.++|+.. +
T Consensus 607 ~la~~~~~~~~~~i~i~~~~~~~~~~--------~s~l~g~~-------------------------------------~ 641 (854)
T 1qvr_A 607 TLAATLFDTEEAMIRIDMTEYMEKHA--------VSRLIGAP-------------------------------------P 641 (854)
T ss_dssp HHHHHHHSSGGGEEEECTTTCCSSGG--------GGGC------------------------------------------
T ss_pred HHHHHhcCCCCcEEEEechhccchhH--------HHHHcCCC-------------------------------------C
Confidence 999999 78999999999865411 11111000 0
Q ss_pred cccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHH
Q psy2392 912 TDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIK 991 (1165)
Q Consensus 912 ~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~ 991 (1165)
++. |.++ .
T Consensus 642 -~~~-------------------------------------------G~~~------------------~---------- 649 (854)
T 1qvr_A 642 -GYV-------------------------------------------GYEE------------------G---------- 649 (854)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -CCc-------------------------------------------Cccc------------------c----------
Confidence 000 0000 0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee-eccCce
Q psy2392 992 LLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDH 1070 (1165)
Q Consensus 992 ~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~-~~~t~~ 1070 (1165)
..+ ..++.. ...+++||||||++... +|+.||.++|...++...| .++..|
T Consensus 650 -------------g~l-~~~~~~-~~~~vl~lDEi~~l~~~-------------~~~~Ll~~l~~~~~~~~~g~~vd~~~ 701 (854)
T 1qvr_A 650 -------------GQL-TEAVRR-RPYSVILFDEIEKAHPD-------------VFNILLQILDDGRLTDSHGRTVDFRN 701 (854)
T ss_dssp --------------CH-HHHHHH-CSSEEEEESSGGGSCHH-------------HHHHHHHHHTTTEECCSSSCCEECTT
T ss_pred -------------chH-HHHHHh-CCCeEEEEecccccCHH-------------HHHHHHHHhccCceECCCCCEeccCC
Confidence 000 011111 24689999999998654 9999999999766543222 566788
Q ss_pred EEEEecCCCCC----C------------------CCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHH
Q psy2392 1071 ILFIASGAFHL----A------------------KPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALL 1128 (1165)
Q Consensus 1071 ilfI~~gaf~~----~------------------~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~ 1128 (1165)
+++|+++.... . ....|.|+|.+||+..+.|.||+.+++..|+. ..+.++...+
T Consensus 702 ~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~----~~l~~~~~~~ 777 (854)
T 1qvr_A 702 TVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVE----IQLSYLRARL 777 (854)
T ss_dssp EEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHH----HHHHHHHHHH
T ss_pred eEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHH----HHHHHHHHHH
Confidence 89999876410 0 12357899999999999999999999999999 6677777777
Q ss_pred hhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1129 ATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1129 ~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
...++.+.|+++|+++|+..+++.
T Consensus 778 ~~~~~~~~~~~~a~~~L~~~~~~~ 801 (854)
T 1qvr_A 778 AEKRISLELTEAAKDFLAERGYDP 801 (854)
T ss_dssp HTTTCEEEECHHHHHHHHHHHCBT
T ss_pred HhCCceEEECHHHHHHHHHcCCCC
Confidence 777889999999999999999954
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.2e-39 Score=406.88 Aligned_cols=450 Identities=19% Similarity=0.301 Sum_probs=296.8
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|.|.+++++.|.+.+..+++++.+....+.. +|+++||+||||||||++|+++|++++.+|+.++++++.+. |+|.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~-~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk-~~ge 281 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVK-PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK-LAGE 281 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCC-CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS-CTTH
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCC-CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc-cchH
Confidence 589999999999999999888888877765533 46899999999999999999999999999999999999875 8887
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ +..++.+|..+
T Consensus 282 s-e~~lr~lF~~A------------------------------------------------------------------- 293 (806)
T 3cf2_A 282 S-ESNLRKAFEEA------------------------------------------------------------------- 293 (806)
T ss_dssp H-HHHHHHHHHHH-------------------------------------------------------------------
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 7 55577777663
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
.. ..++|
T Consensus 294 -----------------------------------------------------------------------~~--~~PsI 300 (806)
T 3cf2_A 294 -----------------------------------------------------------------------EK--NAPAI 300 (806)
T ss_dssp -----------------------------------------------------------------------TT--SCSEE
T ss_pred -----------------------------------------------------------------------HH--cCCeE
Confidence 00 15899
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--CCCee
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIR 500 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~--R~~~~ 500 (1165)
|||||||.|++++++. ..+.+ ..+...||..|+|-. ...++++|+++ ++|..+.|+|++ ||+..
T Consensus 301 IfIDEiDal~~~r~~~-~~~~~-~riv~~LL~~mdg~~--------~~~~V~VIaaT----N~~d~LD~ALrR~GRFd~~ 366 (806)
T 3cf2_A 301 IFIDELDAIAPKREKT-HGEVE-RRIVSQLLTLMDGLK--------QRAHVIVMAAT----NRPNSIDPALRRFGRFDRE 366 (806)
T ss_dssp EEEESGGGTCCTTTTC-CCTTH-HHHHHHHHTHHHHCC--------GGGCEEEEEEC----SSTTTSCTTTTSTTSSCEE
T ss_pred EEEehhcccccccCCC-CChHH-HHHHHHHHHHHhccc--------ccCCEEEEEec----CChhhcCHHHhCCcccceE
Confidence 9999999999887652 22333 345567888888732 34578889884 689999999986 99999
Q ss_pred EecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhcc
Q psy2392 501 VELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN 580 (1165)
Q Consensus 501 v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~ 580 (1165)
|++..++.++..+||+ . ...++.+. ++-.++.||..+.. +-+.-|..++.......
T Consensus 367 I~i~~Pd~~~R~~IL~----~---------~l~~~~~~-~dvdl~~lA~~T~G-------fsgaDL~~Lv~eA~~~A--- 422 (806)
T 3cf2_A 367 VDIGIPDATGRLEILQ----I---------HTKNMKLA-DDVDLEQVANETHG-------HVGADLAALCSEAALQA--- 422 (806)
T ss_dssp EECCCCCHHHHHHHHH----H---------TCSSSEEC-TTCCHHHHHHHCCS-------CCHHHHHHHHHHHHHHH---
T ss_pred EecCCCCHHHHHHHHH----H---------HhcCCCCC-cccCHHHHHHhcCC-------CCHHHHHHHHHHHHHHH---
Confidence 9999999999999994 1 12233322 22235566655532 33333444433321110
Q ss_pred cCCCeeEEcccccccccccCcccccccccccccccccCcceeeeecCCcccccCCccccccccccCcchHHHHhhhhccc
Q psy2392 581 SNNISLLVDADYVNSRLGDLSINEDLSRYDSGMEKFQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQV 660 (1165)
Q Consensus 581 ~~~~~~~i~~~~v~~~~~~~~~~~dls~~i~~~~~~~gt~~~aLaRG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~V 660 (1165)
..|. .. .+
T Consensus 423 ---------------------------------------------------------------------~~r~--~~-~i 430 (806)
T 3cf2_A 423 ---------------------------------------------------------------------IRKK--MD-LI 430 (806)
T ss_dssp ---------------------------------------------------------------------HHHH--HH-HG
T ss_pred ---------------------------------------------------------------------HHhc--cc-cc
Confidence 0000 00 00
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccccchHHHHhhhhhhhhhhhhcCCCCccCcccccccc
Q psy2392 661 LAGIAGSTADAFTLLDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENGIGAI 740 (1165)
Q Consensus 661 i~v~EPs~edT~~IL~glk~~yE~~h~~aL~aav~LS~ryi~~R~lPDkdlid~a~a~~~~~~~s~~~~~~~~~~~i~~i 740 (1165)
....+....+ .+. ...+-..|. ..+... +.+.. .
T Consensus 431 ~~~~~~~~~e------------------~~~-----------~~~v~~~Df------~~Al~~-------~~ps~----~ 464 (806)
T 3cf2_A 431 DLEDETIDAE------------------VMN-----------SLAVTMDDF------RWALSQ-------SNPSA----L 464 (806)
T ss_dssp GGTCCCCSHH------------------HHH-----------HCEECTTHH------HHHHSS-------SSCCC----C
T ss_pred cccccccchh------------------hhc-----------cceeeHHHH------HHHHHh-------CCCcc----c
Confidence 0000000000 000 000000000 000000 00000 0
Q ss_pred ccccccHHHHHHHhhhccCCChHHHHHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEE
Q psy2392 741 GSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNIL 820 (1165)
Q Consensus 741 ~~~~~~~~~~a~~l~~~t~~~~~~i~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iL 820 (1165)
.+... +....-|++|.|++++++.|.+.+.++++...+..... ..+++++|
T Consensus 465 --r~~~~--------------------------~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g-~~~~~gvL 515 (806)
T 3cf2_A 465 --RETVV--------------------------EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVL 515 (806)
T ss_dssp --CCCCC--------------------------BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC-CCCCSCCE
T ss_pred --ccccc--------------------------cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC-CCCCceEE
Confidence 00000 00112357899999999999999987665554443322 12368999
Q ss_pred EEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHh
Q psy2392 821 MIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDI 900 (1165)
Q Consensus 821 L~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ 900 (1165)
||||||||||++|+++|++++.+|+.++++++.++ |+|++ +..++++|..|+..
T Consensus 516 l~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~-~vGes-e~~vr~lF~~Ar~~------------------------ 569 (806)
T 3cf2_A 516 FYGPPGCGKTLLAKAIANECQANFISIKGPELLTM-WFGES-EANVREIFDKARQA------------------------ 569 (806)
T ss_dssp EESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT-TCSSC-HHHHHHHHHHHHTT------------------------
T ss_pred EecCCCCCchHHHHHHHHHhCCceEEeccchhhcc-ccchH-HHHHHHHHHHHHHc------------------------
Confidence 99999999999999999999999999999999998 99999 46799998877222
Q ss_pred hcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCcc
Q psy2392 901 LVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKK 980 (1165)
Q Consensus 901 ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 980 (1165)
T Consensus 570 -------------------------------------------------------------------------------- 569 (806)
T 3cf2_A 570 -------------------------------------------------------------------------------- 569 (806)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCC-CCccchhhhhhccccccCccc
Q psy2392 981 TRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNN-TDISRAGVQRDLLPLVEGTTV 1059 (1165)
Q Consensus 981 ~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~-~~~~~~gvq~~lL~~~Eg~~v 1059 (1165)
.++||||||||.|+..++...+ ......-+-..||..|+|-.
T Consensus 570 ------------------------------------~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~- 612 (806)
T 3cf2_A 570 ------------------------------------APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS- 612 (806)
T ss_dssp ------------------------------------CSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC-
T ss_pred ------------------------------------CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC-
Confidence 5789999999999987653221 11122236678999999732
Q ss_pred eeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--cCCeEEEcCCCCHHHHHHHHh
Q psy2392 1060 NTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1060 ~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~i~v~l~~l~~~~l~~il~ 1114 (1165)
..+++++|+++ +.|+.|.|+|++ ||..+++++.++.++..+||+
T Consensus 613 -------~~~~V~vi~aT----N~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~ 658 (806)
T 3cf2_A 613 -------TKKNVFIIGAT----NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILK 658 (806)
T ss_dssp -------SSSSEEEECC-----CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTT
T ss_pred -------CCCCEEEEEeC----CCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHH
Confidence 34568888876 589999999986 999999999999999999998
No 9
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=4e-38 Score=402.13 Aligned_cols=388 Identities=23% Similarity=0.322 Sum_probs=289.3
Q ss_pred cccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHHHHhh----
Q psy2392 16 EKFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG---- 89 (1165)
Q Consensus 16 ~~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~~h~---- 89 (1165)
+.+++.|+| .|++|+++||||||+.+|++ ++.|++|.|| |+ .| .|++|+.+++..||+++..+|+.||+
T Consensus 283 g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~-~~~d~aL~rR--f~-~i-~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~ 357 (854)
T 1qvr_A 283 GAVDAGNMLKPALARGELRLIGATTLDEYRE-IEKDPALERR--FQ-PV-YVDEPTVEETISILRGLKEKYEVHHGVRIS 357 (854)
T ss_dssp ---------HHHHHTTCCCEEEEECHHHHHH-HTTCTTTCSC--CC-CE-EECCCCHHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred chHHHHHHHHHHHhCCCeEEEEecCchHHhh-hccCHHHHhC--Cc-eE-EeCCCCHHHHHHHHHhhhhhhhhhcCCCCC
Confidence 357888888 89999999999999999999 9999999999 99 55 59999999999999999999999998
Q ss_pred -HHHHHHHHHHHhhcCCCCchhH--HHHHhhhhhhhhhhccCCCCccCccccccc-------------------------
Q psy2392 90 -NLMRASVELAKEWRNDRTLRRL--EAMLLTANRETTLIITGNGDVLEPENGIGA------------------------- 141 (1165)
Q Consensus 90 -~al~~~v~ls~rYi~~r~lPDk--alld~a~a~~~~~~~~~~~~~~~~e~~~~~------------------------- 141 (1165)
+++.+++.+|.+|+++|++||+ +++|++|+..+....+.|.....+++.+.+
T Consensus 358 ~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (854)
T 1qvr_A 358 DSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEA 437 (854)
T ss_dssp HHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHH
T ss_pred HHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 9999999999999999999997 458999988876422111100000000000
Q ss_pred ---------------------------------------------------------------------c---------c
Q psy2392 142 ---------------------------------------------------------------------I---------G 143 (1165)
Q Consensus 142 ---------------------------------------------------------------------~---------~ 143 (1165)
. -
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (854)
T 1qvr_A 438 EIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFV 517 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhhhcccccc
Confidence 0 0
Q ss_pred ccchhhHHHHHHhhhccccCchhhhhh-hhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEE
Q psy2392 144 SGGIFAQSAAKALQENTELMPDEIIKK-SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNIL 222 (1165)
Q Consensus 144 ~~~~~~~~va~~l~~~t~l~~~~i~~~-~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~L 222 (1165)
.+.+....++..++.|+++|...+... ...+..+.+.|.+.|+||+.+++.+..++... +.|+.++.+|. +++|
T Consensus 518 ~~~v~~~~l~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~--~~g~~~~~~p~---~~vL 592 (854)
T 1qvr_A 518 RLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRA--RAGLKDPNRPI---GSFL 592 (854)
T ss_dssp CSEECHHHHHHHHHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHH--GGGCSCSSSCS---EEEE
T ss_pred cCCcCHHHHHHHHHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHH--hcccCCCCCCc---eEEE
Confidence 011112345666777888877766443 34556677888889999999999999999865 66776665554 7999
Q ss_pred EEcCCCCCchHHHHHHHHHh---CCCceEEeccccccc-----------cccccchhhHHHHHHHHHhhhhhhHHHHHHH
Q psy2392 223 MIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFTEV-----------GYVGRDVDTIIRDLIDISIKQTREFEINKVR 288 (1165)
Q Consensus 223 l~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~~~~-----------GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~ 288 (1165)
|+||||||||++|++|++.+ +.+|+.++|+++.+. ||+|+...+.+.
T Consensus 593 l~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~------------------- 653 (854)
T 1qvr_A 593 FLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLT------------------- 653 (854)
T ss_dssp EBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHH-------------------
T ss_pred EECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHH-------------------
Confidence 99999999999999999999 789999999987652 222222111110
Q ss_pred hHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHH
Q psy2392 289 TRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQ 368 (1165)
Q Consensus 289 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (1165)
T Consensus 654 -------------------------------------------------------------------------------- 653 (854)
T 1qvr_A 654 -------------------------------------------------------------------------------- 653 (854)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhh
Q psy2392 369 IKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGV 448 (1165)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~v 448 (1165)
.++.. .+++||||||||++++. +
T Consensus 654 -------------------------------------------~~~~~-~~~~vl~lDEi~~l~~~-------------~ 676 (854)
T 1qvr_A 654 -------------------------------------------EAVRR-RPYSVILFDEIEKAHPD-------------V 676 (854)
T ss_dssp -------------------------------------------HHHHH-CSSEEEEESSGGGSCHH-------------H
T ss_pred -------------------------------------------HHHHh-CCCeEEEEecccccCHH-------------H
Confidence 11222 26789999999998765 8
Q ss_pred hhhhcccccCceeeeec-eeecCceEEEEEeCCccc----C------------------CCCCCchhhhCCCCeeEecCC
Q psy2392 449 QRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHL----A------------------KPSDLIPELQGRFPIRVELDS 505 (1165)
Q Consensus 449 q~~lL~~~Eg~~v~~~~-~~~~t~~ilfI~~gaf~~----~------------------~p~~l~pel~~R~~~~v~~~~ 505 (1165)
|+.||+++|.+.++... ..++..|+++|++++... . ....|.|+|.+||+.++.|.|
T Consensus 677 ~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~p 756 (854)
T 1qvr_A 677 FNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRP 756 (854)
T ss_dssp HHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCC
T ss_pred HHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCC
Confidence 88999999977665432 367788999999876410 0 123589999999999999999
Q ss_pred CCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 506 LSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 506 L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
|+.+++..|+ ...+.++...+...++.+.|+++++++|++.+++ +.+|||.|+++|++.+....
T Consensus 757 l~~edi~~i~----~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~-----~~gn~R~L~~~i~~~~~~~~ 820 (854)
T 1qvr_A 757 LTKEQIRQIV----EIQLSYLRARLAEKRISLELTEAAKDFLAERGYD-----PVFGARPLRRVIQRELETPL 820 (854)
T ss_dssp CCHHHHHHHH----HHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCB-----TTTBTSTHHHHHHHHTHHHH
T ss_pred CCHHHHHHHH----HHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCC-----CCCChHHHHHHHHHHHHHHH
Confidence 9999999999 4566666777777788999999999999999986 36899999999999876543
No 10
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.97 E-value=8.6e-32 Score=311.28 Aligned_cols=290 Identities=38% Similarity=0.639 Sum_probs=233.4
Q ss_pred hHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCC-CCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 172 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGP-LQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 172 ~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~-~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
.+|.++.+.|++.|+||+.+++.+..++..+|++...... .+....+.++||+||||||||++|+++|+.++.+|+.++
T Consensus 4 ~~~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~ 83 (363)
T 3hws_A 4 PTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 83 (363)
T ss_dssp CCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence 4678899999999999999999999999877665433221 111223579999999999999999999999999999999
Q ss_pred ccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHH
Q psy2392 251 ATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFR 330 (1165)
Q Consensus 251 ~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1165)
++++..+||+|+...+.++.++..+.
T Consensus 84 ~~~l~~~~~~g~~~~~~~~~~~~~~~------------------------------------------------------ 109 (363)
T 3hws_A 84 ATTLTEAGYVGEDVENIIQKLLQKCD------------------------------------------------------ 109 (363)
T ss_dssp HHHHTTCHHHHHHHTHHHHHHHHHTT------------------------------------------------------
T ss_pred hHHhcccccccccHHHHHHHHHHHhh------------------------------------------------------
Confidence 99998888999876666666665510
Q ss_pred HHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHH
Q psy2392 331 KRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQ 410 (1165)
Q Consensus 331 ~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (1165)
|.
T Consensus 110 -----~~------------------------------------------------------------------------- 111 (363)
T 3hws_A 110 -----YD------------------------------------------------------------------------- 111 (363)
T ss_dssp -----TC-------------------------------------------------------------------------
T ss_pred -----hh-------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHhhhccceEEEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeee-----------eceeecCceEEEEEe
Q psy2392 411 QKAINNVEQNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNT-----------KYGIIKTDHILFIAS 478 (1165)
Q Consensus 411 ~~a~~~~~~~~IifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~-----------~~~~~~t~~ilfI~~ 478 (1165)
+.. .+++||||||||++.+.+.+.+ +.+.+++++|+.||++|||..+.. ....+.|.|++||++
T Consensus 112 ---~~~-~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~ 187 (363)
T 3hws_A 112 ---VQK-AQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 187 (363)
T ss_dssp ---HHH-HHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEE
T ss_pred ---HHh-cCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEec
Confidence 000 1478999999999998765533 567788889999999999764332 134779999999999
Q ss_pred CCcc---------cCC---------------------------CCC-----CchhhhCCCCeeEecCCCCHHHHHHHHhh
Q psy2392 479 GAFH---------LAK---------------------------PSD-----LIPELQGRFPIRVELDSLSISDFTRIMTS 517 (1165)
Q Consensus 479 gaf~---------~~~---------------------------p~~-----l~pel~~R~~~~v~~~~L~~~~l~~Il~~ 517 (1165)
|+|. ..+ |.+ |.|+|++||++++.|.||+.+++.+|+..
T Consensus 188 g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 188 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp ECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHS
T ss_pred CCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHH
Confidence 9984 111 112 89999999999999999999999999976
Q ss_pred hhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhcccCCCe----eEEccccc
Q psy2392 518 TNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS----LLVDADYV 593 (1165)
Q Consensus 518 ~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~~~~~----~~i~~~~v 593 (1165)
..+.++.++.+.+...++.+.++++++++|++.+|. .++|||.|+++|++++.+..++.|... +.||.++|
T Consensus 268 ~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~-----~~~gaR~L~~~ie~~~~~~l~~~~~~~~~~~~~I~~~~v 342 (363)
T 3hws_A 268 PKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMA-----RKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 342 (363)
T ss_dssp STTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHH-----TTCTTTTHHHHHHHHHHHHHHSTTTCCCSEEEECHHHHT
T ss_pred HHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcC-----CccCchHHHHHHHHHHHHHHHhcccccCCceeEEcHHHH
Confidence 556688899999988999999999999999999998 489999999999999999999998763 79999999
Q ss_pred ccccccCcc
Q psy2392 594 NSRLGDLSI 602 (1165)
Q Consensus 594 ~~~~~~~~~ 602 (1165)
++.+++++.
T Consensus 343 ~~~~~~~~~ 351 (363)
T 3hws_A 343 DGQSEPLLI 351 (363)
T ss_dssp TCCSCCEEE
T ss_pred hCcCCceee
Confidence 998887664
No 11
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.97 E-value=3.3e-31 Score=297.02 Aligned_cols=303 Identities=66% Similarity=1.034 Sum_probs=252.4
Q ss_pred hHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEec
Q psy2392 172 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251 (1165)
Q Consensus 172 ~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~ 251 (1165)
++|.++.+.|++.|+||+.+++.+..++...|.+.++....++...+.++||+||||||||++|+++|+.++.+++.+++
T Consensus 4 ~~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~ 83 (310)
T 1ofh_A 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (310)
T ss_dssp CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred CCHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcc
Confidence 57889999999999999999999999998877776655433322345799999999999999999999999999999999
Q ss_pred cccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHH
Q psy2392 252 TKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRK 331 (1165)
Q Consensus 252 s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (1165)
+.+.+.||+|.+.+..+++++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------- 107 (310)
T 1ofh_A 84 TKFTEVGYVGKEVDSIIRDLTDSA-------------------------------------------------------- 107 (310)
T ss_dssp GGGSSCCSGGGSTTHHHHHHHHTT--------------------------------------------------------
T ss_pred hhcccCCccCccHHHHHHHHHHHh--------------------------------------------------------
Confidence 999888999988666666665431
Q ss_pred HhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHH
Q psy2392 332 RLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQ 411 (1165)
Q Consensus 332 ~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (1165)
.|
T Consensus 108 ---~~--------------------------------------------------------------------------- 109 (310)
T 1ofh_A 108 ---GG--------------------------------------------------------------------------- 109 (310)
T ss_dssp ---TT---------------------------------------------------------------------------
T ss_pred ---hH---------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCch
Q psy2392 412 KAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIP 491 (1165)
Q Consensus 412 ~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~p 491 (1165)
++..+.+++||||||||++.....+ .+.+.+++++|+.||+++|+..+.++++...+.+++||+++.+..+.|..+.|
T Consensus 110 -~~~~~~~~~vl~iDEi~~l~~~~~~-~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 187 (310)
T 1ofh_A 110 -AIDAVEQNGIVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIP 187 (310)
T ss_dssp -CHHHHHHHCEEEEECGGGGSCCSSC-CSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCH
T ss_pred -HHhhccCCCEEEEEChhhcCccccc-cccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCH
Confidence 0001124689999999999987653 45677888999999999999888888888888999999999887888999999
Q ss_pred hhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHH
Q psy2392 492 ELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 571 (1165)
Q Consensus 492 el~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie 571 (1165)
+|.+||+..|.|++|+.+++.+|++.....+..++...+...+..+.++++++++|++.++..|...+.+++|.|.++++
T Consensus 188 ~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~ 267 (310)
T 1ofh_A 188 ELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVME 267 (310)
T ss_dssp HHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHH
T ss_pred HHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHH
Confidence 99999999999999999999999975444677788888888899999999999999999987666666799999999999
Q ss_pred HHHHHhhcccCC---CeeEEcccccccccccCcccccccccc
Q psy2392 572 KLLEEVSFNSNN---ISLLVDADYVNSRLGDLSINEDLSRYD 610 (1165)
Q Consensus 572 ~~l~~~~~~~~~---~~~~i~~~~v~~~~~~~~~~~dls~~i 610 (1165)
+++....+.... ..+.||.+.|++.++......++++|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~~~~~~~~~ 309 (310)
T 1ofh_A 268 RLMDKISFSASDMNGQTVNIDAAYVADALGEVVENEDLSRFI 309 (310)
T ss_dssp HHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSSSCCCCTTSC
T ss_pred HHHHhhhcCCccccCCEEEEeeHHHHHHHHhhhhhhhHHhhc
Confidence 999876665432 236799999999999998888888875
No 12
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=5.4e-29 Score=315.29 Aligned_cols=180 Identities=19% Similarity=0.300 Sum_probs=133.2
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG 859 (1165)
+++++|++++++.+.+.+....+......... ..++.++||+||||||||++|+++|+.++.+|+.++++++.++ |+|
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~-~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~-~~g 553 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM-WFG 553 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCC-CCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC-CTT
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcC-CCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh-hcC
Confidence 46889999999999888764422222111111 1125789999999999999999999999999999999999887 999
Q ss_pred cChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCe
Q psy2392 860 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 939 (1165)
Q Consensus 860 ~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r 939 (1165)
... ..++.+|..+...
T Consensus 554 ~~~-~~i~~~f~~a~~~--------------------------------------------------------------- 569 (806)
T 1ypw_A 554 ESE-ANVREIFDKARQA--------------------------------------------------------------- 569 (806)
T ss_dssp TSS-HHHHHHHHHHHHH---------------------------------------------------------------
T ss_pred ccH-HHHHHHHHHHHhc---------------------------------------------------------------
Confidence 874 4566666544111
Q ss_pred EEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC
Q psy2392 940 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 1019 (1165)
Q Consensus 940 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~g 1019 (1165)
.++
T Consensus 570 -----------------------------------------------------------------------------~p~ 572 (806)
T 1ypw_A 570 -----------------------------------------------------------------------------APC 572 (806)
T ss_dssp -----------------------------------------------------------------------------CSB
T ss_pred -----------------------------------------------------------------------------CCe
Confidence 467
Q ss_pred eeeehhhhhhhccCCCCCC-CCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--cCC
Q psy2392 1020 IIFLDEIDKITTRSSQNNN-TDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFP 1096 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~~-~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~ 1096 (1165)
|+||||||+++....+..+ .+.....++..||..++|. ....+++||++. +.|+.+.|+|++ ||.
T Consensus 573 vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~--------~~~~~v~vI~tT----N~~~~ld~allrpgRf~ 640 (806)
T 1ypw_A 573 VLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM--------STKKNVFIIGAT----NRPDIIDPAILRPGRLD 640 (806)
T ss_dssp CCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--------------CCBCCCCC----BSCGGGSCTTSSGGGTT
T ss_pred EEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcc--------cccCCeEEEEec----CCcccCCHHHhCccccC
Confidence 9999999999887654222 1123345788999999864 234577787775 478889999997 999
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
..+.|+.++.++..+||+
T Consensus 641 ~~i~~~~p~~~~r~~Il~ 658 (806)
T 1ypw_A 641 QLIYIPLPDEKSRVAILK 658 (806)
T ss_dssp SCCCCCCCCCSHHHHHTT
T ss_pred ceeecCCCCHHHHHHHHH
Confidence 999999999999999998
No 13
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.95 E-value=1.3e-27 Score=277.47 Aligned_cols=291 Identities=37% Similarity=0.594 Sum_probs=212.1
Q ss_pred hHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhccc---------CCCC-------CccCCcEEEEEcCCCCCchHHH
Q psy2392 172 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQIT---------GPLQ-------QEITPKNILMIGPTGVGKTEIA 235 (1165)
Q Consensus 172 ~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~---------~~~~-------~~~~~~~~Ll~GPpG~GKT~lA 235 (1165)
.++.++.+.|++.|+||++|++.|..++..++++.... ++.+ ....+.++||+||||||||++|
T Consensus 10 ~~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 10 PAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHH
T ss_pred CCHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHH
Confidence 56889999999999999999999999997655543210 0000 0112478999999999999999
Q ss_pred HHHHHHhCCCceEEeccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccc
Q psy2392 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTD 315 (1165)
Q Consensus 236 k~lA~~l~~~~i~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 315 (1165)
+++|+.++.+|+.++++.+...||+|+.....+..++...
T Consensus 90 ~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------------------------------------- 129 (376)
T 1um8_A 90 QTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS---------------------------------------- 129 (376)
T ss_dssp HHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHT----------------------------------------
T ss_pred HHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhc----------------------------------------
Confidence 9999999999999999998877898887665555555431
Q ss_pred cCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHH
Q psy2392 316 FNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLL 395 (1165)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1165)
.|.
T Consensus 130 -------------------~~~---------------------------------------------------------- 132 (376)
T 1um8_A 130 -------------------DWN---------------------------------------------------------- 132 (376)
T ss_dssp -------------------TTC----------------------------------------------------------
T ss_pred -------------------cch----------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCC-CCCccchhhhhhhhcccccCceeee-----------
Q psy2392 396 IDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNT----------- 463 (1165)
Q Consensus 396 ~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~-~~~~~~~~~vq~~lL~~~Eg~~v~~----------- 463 (1165)
+.. ..++||||||||++...+.+. ...+.+++++|+.||.++|+..+..
T Consensus 133 ------------------~~~-~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 193 (376)
T 1um8_A 133 ------------------VQK-AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEG 193 (376)
T ss_dssp ------------------HHH-HTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC------------
T ss_pred ------------------hhh-cCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCc
Confidence 000 157899999999999875432 3567778889999999999875432
Q ss_pred eceeecCceEEEEEeCCccc-----------------C------C--------------CCCCchhhhCCCCeeEecCCC
Q psy2392 464 KYGIIKTDHILFIASGAFHL-----------------A------K--------------PSDLIPELQGRFPIRVELDSL 506 (1165)
Q Consensus 464 ~~~~~~t~~ilfI~~gaf~~-----------------~------~--------------p~~l~pel~~R~~~~v~~~~L 506 (1165)
....+.|.|++||++|++.. . + ...|.|+|.+||+.++.|++|
T Consensus 194 ~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l 273 (376)
T 1um8_A 194 NFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSI 273 (376)
T ss_dssp ---CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCC
T ss_pred ceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCC
Confidence 12357889999999987420 0 0 124789999999999999999
Q ss_pred CHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhcccCCC--
Q psy2392 507 SISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNI-- 584 (1165)
Q Consensus 507 ~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~~~~-- 584 (1165)
+.+++.+|+....+.+++++.+.+...+..+.++++++++|++.++. .++|+|.|++++++++....++.+..
T Consensus 274 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~-----~~~~~R~L~~~le~~~~~~~~~~~~~~~ 348 (376)
T 1um8_A 274 SLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALE-----RKTGARGLRAIIEDFCLDIMFDLPKLKG 348 (376)
T ss_dssp CHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHH-----TTCTGGGHHHHHHHHHHHHHHTGGGGTT
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcc-----cccCcHHHHHHHHHHHHHHHhhccCCCC
Confidence 99999999976666788888888888899999999999999999976 36899999999999999988877652
Q ss_pred -eeEEcccccccccccCccc
Q psy2392 585 -SLLVDADYVNSRLGDLSIN 603 (1165)
Q Consensus 585 -~~~i~~~~v~~~~~~~~~~ 603 (1165)
.+.||.+.|++.+...+..
T Consensus 349 ~~~~i~~~~v~~~~~~~~~~ 368 (376)
T 1um8_A 349 SEVRITKDCVLKQAEPLIIA 368 (376)
T ss_dssp SEEEECHHHHTTSSCCEEEC
T ss_pred CEEEEeHHHhcCCCCceeec
Confidence 3789999999877766543
No 14
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.95 E-value=7.3e-28 Score=278.39 Aligned_cols=251 Identities=41% Similarity=0.675 Sum_probs=196.6
Q ss_pred hHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCC-CCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 770 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGP-LQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 770 ~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~-~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
.+|.++.+.|++.|+||+.+++.+..++..++++...... .....++.++||+||||||||++|+++|+.++.+|+.++
T Consensus 4 ~~~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~ 83 (363)
T 3hws_A 4 PTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 83 (363)
T ss_dssp CCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence 4577889999999999999999999999776655432211 111123589999999999999999999999999999999
Q ss_pred cCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHH
Q psy2392 849 ATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFR 928 (1165)
Q Consensus 849 ~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~ 928 (1165)
++++...||+|.+.+..++.++..+.
T Consensus 84 ~~~l~~~~~~g~~~~~~~~~~~~~~~------------------------------------------------------ 109 (363)
T 3hws_A 84 ATTLTEAGYVGEDVENIIQKLLQKCD------------------------------------------------------ 109 (363)
T ss_dssp HHHHTTCHHHHHHHTHHHHHHHHHTT------------------------------------------------------
T ss_pred hHHhcccccccccHHHHHHHHHHHhh------------------------------------------------------
Confidence 99998888998765555665543320
Q ss_pred HhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHH
Q psy2392 929 KRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQ 1008 (1165)
Q Consensus 929 ~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~ 1008 (1165)
+. +
T Consensus 110 -----~~-----------------------------------------------------------------------~- 112 (363)
T 3hws_A 110 -----YD-----------------------------------------------------------------------V- 112 (363)
T ss_dssp -----TC-----------------------------------------------------------------------H-
T ss_pred -----hh-----------------------------------------------------------------------H-
Confidence 00 0
Q ss_pred HHHHHhhhcCCeeeehhhhhhhccCCC-CCCCCccchhhhhhccccccCcccee-----------eeeeccCceEEEEec
Q psy2392 1009 QKAINNVEQNGIIFLDEIDKITTRSSQ-NNNTDISRAGVQRDLLPLVEGTTVNT-----------KYGIIKTDHILFIAS 1076 (1165)
Q Consensus 1009 ~~a~~~~~~~gIvfiDEiDki~~~~~~-~~~~~~~~~gvq~~lL~~~Eg~~v~~-----------k~~~~~t~~ilfI~~ 1076 (1165)
+.+ .+||+||||||++.....+ ..+.+++++++|..||+++||..+.. ....+.|.|++|||+
T Consensus 113 ~~~-----~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~ 187 (363)
T 3hws_A 113 QKA-----QRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 187 (363)
T ss_dssp HHH-----HHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEE
T ss_pred Hhc-----CCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEec
Confidence 111 5789999999999987543 24567788899999999999764332 234789999999999
Q ss_pred CCCC---------CCC---------------------------CCC-----CchhhhccCCeEEEcCCCCHHHHHHHHhh
Q psy2392 1077 GAFH---------LAK---------------------------PSD-----LIPELQGRFPIRVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1077 gaf~---------~~~---------------------------p~d-----l~pel~gR~~i~v~l~~l~~~~l~~il~~ 1115 (1165)
|+|. ..+ |.+ |.|+|.+||++++.|.||+.+++.+|+..
T Consensus 188 g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 188 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp ECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHS
T ss_pred CCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHH
Confidence 9985 111 222 89999999999999999999999999997
Q ss_pred hHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCC
Q psy2392 1116 TNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERT 1156 (1165)
Q Consensus 1116 ~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~ 1156 (1165)
+.+.+++++...++..++.+.|+++++++|++.+|..+.++
T Consensus 268 ~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~ga 308 (363)
T 3hws_A 268 PKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGA 308 (363)
T ss_dssp STTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCc
Confidence 77779999999999999999999999999999999984433
No 15
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.95 E-value=1.1e-27 Score=268.30 Aligned_cols=249 Identities=69% Similarity=1.076 Sum_probs=207.3
Q ss_pred hhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 769 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 769 ~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
.++|.++...|.++|+||+++++.+..++...|.+.++....+....+.++||+||||||||++|+++++.++.+++.++
T Consensus 3 ~~~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~ 82 (310)
T 1ofh_A 3 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (310)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred cCCHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 35788999999999999999999999999876666555433222223578999999999999999999999999999999
Q ss_pred cCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHH
Q psy2392 849 ATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFR 928 (1165)
Q Consensus 849 ~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~ 928 (1165)
++.+.+.||+|.+.+..+++++..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 107 (310)
T 1ofh_A 83 ATKFTEVGYVGKEVDSIIRDLTDSA------------------------------------------------------- 107 (310)
T ss_dssp GGGGSSCCSGGGSTTHHHHHHHHTT-------------------------------------------------------
T ss_pred chhcccCCccCccHHHHHHHHHHHh-------------------------------------------------------
Confidence 9999988899987666666554221
Q ss_pred HhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHH
Q psy2392 929 KRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQ 1008 (1165)
Q Consensus 929 ~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~ 1008 (1165)
.|.
T Consensus 108 ----~~~------------------------------------------------------------------------- 110 (310)
T 1ofh_A 108 ----GGA------------------------------------------------------------------------- 110 (310)
T ss_dssp ----TTC-------------------------------------------------------------------------
T ss_pred ----hHH-------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCc
Q psy2392 1009 QKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLI 1088 (1165)
Q Consensus 1009 ~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~ 1088 (1165)
+..+...+|+||||||++.....+ .+.+.+++++|+.||+++|+..+.++++...+.++.||++|.+....|..+.
T Consensus 111 ---~~~~~~~~vl~iDEi~~l~~~~~~-~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 186 (310)
T 1ofh_A 111 ---IDAVEQNGIVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLI 186 (310)
T ss_dssp ---HHHHHHHCEEEEECGGGGSCCSSC-CSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSC
T ss_pred ---HhhccCCCEEEEEChhhcCccccc-cccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCC
Confidence 001124689999999999877543 4567788899999999999998888888889999999999998888999999
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccC
Q psy2392 1089 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCIN 1153 (1165)
Q Consensus 1089 pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~ 1153 (1165)
|+|.+||+.++.|++|+.+++.+|++.....++.++...++.++..+.|++++++.|++.++..|
T Consensus 187 ~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 251 (310)
T 1ofh_A 187 PELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVN 251 (310)
T ss_dssp HHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhc
Confidence 99999999989999999999999999666678888888888899999999999999999998643
No 16
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.91 E-value=2.1e-24 Score=250.41 Aligned_cols=251 Identities=40% Similarity=0.640 Sum_probs=178.4
Q ss_pred hHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhccc---------CCC-------CCCCCCceEEEEccCCCChhHHH
Q psy2392 770 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQIT---------GPL-------QQEITPKNILMIGPTGVGKTEIA 833 (1165)
Q Consensus 770 ~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~---------~~~-------~~~~~~~~iLL~GPpG~GKT~lA 833 (1165)
.++.++.+.|+++|+||+++++.|..++..++++.... .+. .....+.++||+||||||||++|
T Consensus 10 ~~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 10 PAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHH
T ss_pred CCHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHH
Confidence 45788999999999999999999999986655443210 000 00112478999999999999999
Q ss_pred HHHHHHcCCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccc
Q psy2392 834 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTD 913 (1165)
Q Consensus 834 k~lA~~l~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~ 913 (1165)
+++|+.++.+|+.++++.+...||+|.+.+..+..++..+
T Consensus 90 ~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------------------------------------- 129 (376)
T 1um8_A 90 QTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS---------------------------------------- 129 (376)
T ss_dssp HHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHT----------------------------------------
T ss_pred HHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhc----------------------------------------
Confidence 9999999999999999998878888876555555443221
Q ss_pred cCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHH
Q psy2392 914 FNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLL 993 (1165)
Q Consensus 914 ~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l 993 (1165)
.|.
T Consensus 130 -------------------~~~---------------------------------------------------------- 132 (376)
T 1um8_A 130 -------------------DWN---------------------------------------------------------- 132 (376)
T ss_dssp -------------------TTC----------------------------------------------------------
T ss_pred -------------------cch----------------------------------------------------------
Confidence 000
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCC-CCCCCccchhhhhhccccccCcccee-----------
Q psy2392 994 IDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQ-NNNTDISRAGVQRDLLPLVEGTTVNT----------- 1061 (1165)
Q Consensus 994 ~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~-~~~~~~~~~gvq~~lL~~~Eg~~v~~----------- 1061 (1165)
+ ..+ ..||+||||||++...+.+ ..+.+.+.+++|+.||.++|+..+..
T Consensus 133 -------------~-~~~-----~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 193 (376)
T 1um8_A 133 -------------V-QKA-----QKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEG 193 (376)
T ss_dssp -------------H-HHH-----TTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC------------
T ss_pred -------------h-hhc-----CCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCc
Confidence 0 111 5789999999999887433 23467788889999999999875421
Q ss_pred eeeeccCceEEEEecCCCCC-----------------C------C--------------CCCCchhhhccCCeEEEcCCC
Q psy2392 1062 KYGIIKTDHILFIASGAFHL-----------------A------K--------------PSDLIPELQGRFPIRVELDSL 1104 (1165)
Q Consensus 1062 k~~~~~t~~ilfI~~gaf~~-----------------~------~--------------p~dl~pel~gR~~i~v~l~~l 1104 (1165)
.+..+.|.|++|||+|++.. . + ...+.|+|.+||+.++.|+||
T Consensus 194 ~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l 273 (376)
T 1um8_A 194 NFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSI 273 (376)
T ss_dssp ---CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCC
T ss_pred ceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCC
Confidence 23358899999999987531 0 1 124789999999999999999
Q ss_pred CHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCC
Q psy2392 1105 SISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERT 1156 (1165)
Q Consensus 1105 ~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~ 1156 (1165)
+.+++.+|+..+.+.+++++...+...|..+.|+++++++|+..++..+.++
T Consensus 274 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 325 (376)
T 1um8_A 274 SLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGA 325 (376)
T ss_dssp CHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTG
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCc
Confidence 9999999999888889999999998889999999999999999999753333
No 17
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.88 E-value=3.6e-22 Score=224.34 Aligned_cols=248 Identities=27% Similarity=0.367 Sum_probs=180.6
Q ss_pred hhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh---CCCce
Q psy2392 171 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFI 247 (1165)
Q Consensus 171 ~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i 247 (1165)
...+.++.+.|.+.++||+.+++.+..++... +.++..+.+|. .+++|+||||||||++|+++|+.+ +.+++
T Consensus 5 ~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~--~~~~~~~~~~~---~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~ 79 (311)
T 4fcw_A 5 REKLLRLEEELHKRVVGQDEAIRAVADAIRRA--RAGLKDPNRPI---GSFLFLGPTGVGKTELAKTLAATLFDTEEAMI 79 (311)
T ss_dssp HHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHH--HHTCSCTTSCS---EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEE
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH--hcCCCCCCCCc---eEEEEECCCCcCHHHHHHHHHHHHcCCCcceE
Confidence 45677899999999999999999999999765 55555544442 689999999999999999999998 56789
Q ss_pred EEeccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHH
Q psy2392 248 KIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQ 327 (1165)
Q Consensus 248 ~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 327 (1165)
.++++.+... .....++... .+
T Consensus 80 ~~~~~~~~~~--------~~~~~l~g~~------------------------------~~-------------------- 101 (311)
T 4fcw_A 80 RIDMTEYMEK--------HAVSRLIGAP------------------------------PG-------------------- 101 (311)
T ss_dssp EEEGGGCCST--------THHHHHHCCC------------------------------TT--------------------
T ss_pred Eeeccccccc--------ccHHHhcCCC------------------------------Cc--------------------
Confidence 9999876432 1122222110 00
Q ss_pred HHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChh
Q psy2392 328 IFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNED 407 (1165)
Q Consensus 328 ~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (1165)
..|... .
T Consensus 102 -------------------------------~~~~~~-----------------~------------------------- 108 (311)
T 4fcw_A 102 -------------------------------YVGYEE-----------------G------------------------- 108 (311)
T ss_dssp -------------------------------STTTTT-----------------C-------------------------
T ss_pred -------------------------------cccccc-----------------c-------------------------
Confidence 000000 0
Q ss_pred HHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeee-ceeecCceEEEEEeCCccc---
Q psy2392 408 EIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK-YGIIKTDHILFIASGAFHL--- 483 (1165)
Q Consensus 408 ~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~-~~~~~t~~ilfI~~gaf~~--- 483 (1165)
.....++... +++|+||||||++.+. +|+.||+++|...+... ...++..+++||++++...
T Consensus 109 ~~~~~~~~~~-~~~vl~lDEi~~l~~~-------------~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i 174 (311)
T 4fcw_A 109 GQLTEAVRRR-PYSVILFDAIEKAHPD-------------VFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLI 174 (311)
T ss_dssp CHHHHHHHHC-SSEEEEEETGGGSCHH-------------HHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHH
T ss_pred chHHHHHHhC-CCeEEEEeChhhcCHH-------------HHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHH
Confidence 0001122222 5789999999999754 78899999987665432 2256777889999976410
Q ss_pred -------CC------------CCCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHH
Q psy2392 484 -------AK------------PSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGI 544 (1165)
Q Consensus 484 -------~~------------p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~ 544 (1165)
.. +..|.|+|.+||+..+.|.||+.+++.+|+. ..+.++...+...+..+.++++++
T Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~----~~l~~~~~~~~~~~~~~~~~~~~~ 250 (311)
T 4fcw_A 175 LEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVE----IQMSYLRARLAEKRISLELTEAAK 250 (311)
T ss_dssp HTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHH----HHTHHHHHHHHTTTCEEEECHHHH
T ss_pred HhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHH----HHHHHHHHHHHhCCcEEEeCHHHH
Confidence 00 2358899999999999999999999999994 555666666666788999999999
Q ss_pred HHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 545 QRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 545 ~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
+.|++.+++ ..+|+|.|++++++++...
T Consensus 251 ~~l~~~~~~-----~~gn~R~L~~~i~~~~~~~ 278 (311)
T 4fcw_A 251 DFLAERGYD-----PVFGARPLRRVIQRELETP 278 (311)
T ss_dssp HHHHHHSCB-----TTTBTTTHHHHHHHHTHHH
T ss_pred HHHHHhCCC-----ccCCchhHHHHHHHHHHHH
Confidence 999998765 3689999999999987643
No 18
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.6e-22 Score=232.86 Aligned_cols=239 Identities=19% Similarity=0.317 Sum_probs=172.0
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG 261 (1165)
.++|.|++++|+.|.+++..+++++.++...+.. +|+++|||||||||||++|+++|.+++.+|+.++++++.+. |+|
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~-~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk-~vG 224 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIA-QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK-YIG 224 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC-CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS-STT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCC-CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc-ccc
Confidence 4699999999999999999888887766543322 35899999999999999999999999999999999999886 999
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCc
Q psy2392 262 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 341 (1165)
Q Consensus 262 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 341 (1165)
.+ +..++++|..+
T Consensus 225 es-e~~vr~lF~~A------------------------------------------------------------------ 237 (405)
T 4b4t_J 225 EG-SRMVRELFVMA------------------------------------------------------------------ 237 (405)
T ss_dssp HH-HHHHHHHHHHH------------------------------------------------------------------
T ss_pred hH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 88 56688888663
Q ss_pred EEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccce
Q psy2392 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 421 (1165)
Q Consensus 342 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 421 (1165)
.. ..++
T Consensus 238 ------------------------------------------------------------------------r~--~aP~ 243 (405)
T 4b4t_J 238 ------------------------------------------------------------------------RE--HAPS 243 (405)
T ss_dssp ------------------------------------------------------------------------HH--TCSE
T ss_pred ------------------------------------------------------------------------HH--hCCc
Confidence 11 1489
Q ss_pred EEEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCC
Q psy2392 422 IIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 498 (1165)
Q Consensus 422 IifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~ 498 (1165)
||||||||.+++++..++ +.+.....+...||..|||-. ...++++|+|+ +.|+.++|+|+ |||+
T Consensus 244 IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~--------~~~~V~vIaAT----Nrpd~LDpAllRpGRfD 311 (405)
T 4b4t_J 244 IIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE--------TSKNIKIIMAT----NRLDILDPALLRPGRID 311 (405)
T ss_dssp EEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT--------CCCCEEEEEEE----SCSSSSCHHHHSTTSSC
T ss_pred eEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC--------CCCCeEEEecc----CChhhCCHhHcCCCcCc
Confidence 999999999998866533 223233345567888888732 35678888884 78999999998 5999
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
..|+|..++.++..+||+ .+ + .++.+. ++-.++.||+.+. ++-++-|.+++........
T Consensus 312 ~~I~i~lPd~~~R~~Il~----~~-------~--~~~~l~-~dvdl~~lA~~t~-------G~SGADi~~l~~eA~~~Ai 370 (405)
T 4b4t_J 312 RKIEFPPPSVAARAEILR----IH-------S--RKMNLT-RGINLRKVAEKMN-------GCSGADVKGVCTEAGMYAL 370 (405)
T ss_dssp CEEECCCCCHHHHHHHHH----HH-------H--TTSBCC-SSCCHHHHHHHCC-------SCCHHHHHHHHHHHHHHHH
T ss_pred eEEEcCCcCHHHHHHHHH----HH-------h--cCCCCC-ccCCHHHHHHHCC-------CCCHHHHHHHHHHHHHHHH
Confidence 999999999999999994 11 1 223222 1113677777653 4455567777655433222
Q ss_pred cccCCCeeEEccccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
.+ ....|+.+.+...+..
T Consensus 371 r~---~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 371 RE---RRIHVTQEDFELAVGK 388 (405)
T ss_dssp HT---TCSBCCHHHHHHHHHH
T ss_pred Hc---CCCCcCHHHHHHHHHH
Confidence 11 1234565555554443
No 19
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.86 E-value=1.9e-22 Score=252.34 Aligned_cols=312 Identities=15% Similarity=0.230 Sum_probs=196.1
Q ss_pred ecCCeEEEEccCHHHHHHhhhccchhhh--hhccccceEEecCCCHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC
Q psy2392 27 RRGNKVSLGGDGQVTFGNVIMKNSAKKV--RKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQGNLMRASVELAKEWRN 104 (1165)
Q Consensus 27 ARGel~~IgATT~~Eyr~~IekD~Al~R--R~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~~h~~al~~~v~ls~rYi~ 104 (1165)
.++.+.+||||..-+- -|+||.| | |. ..+.|+-|+.++-..||+.+..++......-|..++..++.|..
T Consensus 337 ~~~~V~VIaaTN~~d~-----LD~ALrR~GR--Fd-~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~Gfsg 408 (806)
T 3cf2_A 337 QRAHVIVMAATNRPNS-----IDPALRRFGR--FD-REVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVG 408 (806)
T ss_dssp GGGCEEEEEECSSTTT-----SCTTTTSTTS--SC-EEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCH
T ss_pred ccCCEEEEEecCChhh-----cCHHHhCCcc--cc-eEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCH
Confidence 5788999999987653 3999999 8 99 78889999999999999865443321111335556666555543
Q ss_pred CCCchhH-HHHHhhhhhhhhhhc---cCCCCccCccccccccc-ccchhhHHHHHHhhhccccCchhhhhhhhHHHHHHH
Q psy2392 105 DRTLRRL-EAMLLTANRETTLII---TGNGDVLEPENGIGAIG-SGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVS 179 (1165)
Q Consensus 105 ~r~lPDk-alld~a~a~~~~~~~---~~~~~~~~~e~~~~~~~-~~~~~~~~va~~l~~~t~l~~~~i~~~~~~~~~l~~ 179 (1165)
-|+ ++..+|+-....... +........+. ...+. ...++. .++.. +.+....+.. .+...
T Consensus 409 ----aDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~-~~~~~v~~~Df~----~Al~~---~~ps~~r~~~---~~~p~ 473 (806)
T 3cf2_A 409 ----ADLAALCSEAALQAIRKKMDLIDLEDETIDAEV-MNSLAVTMDDFR----WALSQ---SNPSALRETV---VEVPQ 473 (806)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHH-HHHCEECTTHHH----HHHSS---SSCCCCCCCC---CBCCC
T ss_pred ----HHHHHHHHHHHHHHHHhccccccccccccchhh-hccceeeHHHHH----HHHHh---CCCccccccc---ccCCC
Confidence 343 344444333321111 10000000000 00000 011111 11111 1110000000 00011
Q ss_pred HhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccc
Q psy2392 180 ELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGY 259 (1165)
Q Consensus 180 ~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~Gy 259 (1165)
.-+.+|.|++++++.|.+++..+++++.+....+.. ++.++||+||||||||++|+++|.+++.+|+.++.+++.++ |
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~-~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~-~ 551 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT-PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM-W 551 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCC-CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT-T
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCC-CCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc-c
Confidence 124689999999999999998887777666543322 35899999999999999999999999999999999999986 9
Q ss_pred cccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCC
Q psy2392 260 VGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALD 339 (1165)
Q Consensus 260 vG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 339 (1165)
+|.+ +..++.+|..+
T Consensus 552 vGes-e~~vr~lF~~A---------------------------------------------------------------- 566 (806)
T 3cf2_A 552 FGES-EANVREIFDKA---------------------------------------------------------------- 566 (806)
T ss_dssp CSSC-HHHHHHHHHHH----------------------------------------------------------------
T ss_pred cchH-HHHHHHHHHHH----------------------------------------------------------------
Confidence 9999 56688888763
Q ss_pred CcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhcc
Q psy2392 340 NKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQ 419 (1165)
Q Consensus 340 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 419 (1165)
.. ..
T Consensus 567 --------------------------------------------------------------------------r~--~~ 570 (806)
T 3cf2_A 567 --------------------------------------------------------------------------RQ--AA 570 (806)
T ss_dssp --------------------------------------------------------------------------HT--TC
T ss_pred --------------------------------------------------------------------------HH--cC
Confidence 01 14
Q ss_pred ceEEEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--C
Q psy2392 420 NGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--R 496 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~--R 496 (1165)
++||||||||.+++.+..+. ........+.+.||..|+|-. ..+++++|+|+ +.|+.++|+|+. |
T Consensus 571 P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~--------~~~~V~vi~aT----N~p~~lD~AllRpgR 638 (806)
T 3cf2_A 571 PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS--------TKKNVFIIGAT----NRPDIIDPAILRPGR 638 (806)
T ss_dssp SEEEECSCGGGCC--------------CHHHHHHHHHHHSSC--------SSSSEEEECC-----CCSSSSCHHHHSTTT
T ss_pred CceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC--------CCCCEEEEEeC----CCchhCCHhHcCCCc
Confidence 79999999999998875422 122223457788999999842 34578888884 689999999985 9
Q ss_pred CCeeEecCCCCHHHHHHHHh
Q psy2392 497 FPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 497 ~~~~v~~~~L~~~~l~~Il~ 516 (1165)
|+.+|.+..++.++..+|++
T Consensus 639 fd~~i~v~lPd~~~R~~il~ 658 (806)
T 3cf2_A 639 LDQLIYIPLPDEKSRVAILK 658 (806)
T ss_dssp SCCEEEC-----CHHHHTTT
T ss_pred ceEEEEECCcCHHHHHHHHH
Confidence 99999999999999999995
No 20
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=8.1e-22 Score=228.79 Aligned_cols=180 Identities=23% Similarity=0.406 Sum_probs=142.9
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG 859 (1165)
|++|+|++++++.|.+++..+++...+...... .+|+++|||||||||||++|+++|++++.+|+.++++++.++ |+|
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi-~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk-~vG 224 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGI-AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK-YIG 224 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS-STT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc-ccc
Confidence 589999999999999999887665544432111 126899999999999999999999999999999999999998 999
Q ss_pred cChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCe
Q psy2392 860 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 939 (1165)
Q Consensus 860 ~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r 939 (1165)
++ +..++++|..|..+
T Consensus 225 es-e~~vr~lF~~Ar~~--------------------------------------------------------------- 240 (405)
T 4b4t_J 225 EG-SRMVRELFVMAREH--------------------------------------------------------------- 240 (405)
T ss_dssp HH-HHHHHHHHHHHHHT---------------------------------------------------------------
T ss_pred hH-HHHHHHHHHHHHHh---------------------------------------------------------------
Confidence 98 56789988776222
Q ss_pred EEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC
Q psy2392 940 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 1019 (1165)
Q Consensus 940 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~g 1019 (1165)
+++
T Consensus 241 -----------------------------------------------------------------------------aP~ 243 (405)
T 4b4t_J 241 -----------------------------------------------------------------------------APS 243 (405)
T ss_dssp -----------------------------------------------------------------------------CSE
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 567
Q ss_pred eeeehhhhhhhccCCCCC-CCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--cCC
Q psy2392 1020 IIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFP 1096 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~-~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~ 1096 (1165)
||||||||.|++.+..++ +.+.....+-..||..|+|. -..+++++|+++ +.|+.|.|+|++ ||+
T Consensus 244 IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~--------~~~~~V~vIaAT----Nrpd~LDpAllRpGRfD 311 (405)
T 4b4t_J 244 IIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF--------ETSKNIKIIMAT----NRLDILDPALLRPGRID 311 (405)
T ss_dssp EEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT--------TCCCCEEEEEEE----SCSSSSCHHHHSTTSSC
T ss_pred eEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc--------CCCCCeEEEecc----CChhhCCHhHcCCCcCc
Confidence 999999999998764322 22222222344567777753 345678888886 589999999985 999
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
..++|+.++.++..+||+
T Consensus 312 ~~I~i~lPd~~~R~~Il~ 329 (405)
T 4b4t_J 312 RKIEFPPPSVAARAEILR 329 (405)
T ss_dssp CEEECCCCCHHHHHHHHH
T ss_pred eEEEcCCcCHHHHHHHHH
Confidence 999999999999999997
No 21
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.4e-21 Score=225.46 Aligned_cols=238 Identities=17% Similarity=0.277 Sum_probs=168.2
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG 261 (1165)
.++|.|.+++|+.|.+.+..+++++.+....+.. +|.++|||||||||||++|+++|.+++.+|+.++++++.+. |+|
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~-~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk-~vG 258 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIK-PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQK-YLG 258 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC-CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCS-SSS
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC-CCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhc-cCc
Confidence 4689999999999999999877776655433222 35899999999999999999999999999999999999885 999
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCc
Q psy2392 262 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 341 (1165)
Q Consensus 262 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 341 (1165)
.+ +..++.+|..+
T Consensus 259 es-ek~ir~lF~~A------------------------------------------------------------------ 271 (437)
T 4b4t_I 259 DG-PRLCRQIFKVA------------------------------------------------------------------ 271 (437)
T ss_dssp HH-HHHHHHHHHHH------------------------------------------------------------------
T ss_pred hH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 88 56677777662
Q ss_pred EEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccce
Q psy2392 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 421 (1165)
Q Consensus 342 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 421 (1165)
.. ..++
T Consensus 272 ------------------------------------------------------------------------r~--~aP~ 277 (437)
T 4b4t_I 272 ------------------------------------------------------------------------GE--NAPS 277 (437)
T ss_dssp ------------------------------------------------------------------------HH--TCSE
T ss_pred ------------------------------------------------------------------------Hh--cCCc
Confidence 11 1479
Q ss_pred EEEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCC
Q psy2392 422 IIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 498 (1165)
Q Consensus 422 IifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~ 498 (1165)
||||||||.++..+..++ +.+.....+...||..++|. -..+++++|+|+ +.|+.++|+|+ |||+
T Consensus 278 IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~--------~~~~~ViVIaAT----Nrpd~LDpALlRpGRfD 345 (437)
T 4b4t_I 278 IVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF--------DDRGDVKVIMAT----NKIETLDPALIRPGRID 345 (437)
T ss_dssp EEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC--------CCSSSEEEEEEE----SCSTTCCTTSSCTTTEE
T ss_pred EEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc--------CCCCCEEEEEeC----CChhhcCHHHhcCCcee
Confidence 999999999998876533 22222233444567767752 245678899884 78999999998 5999
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
..|+|..++.++..+||+ .. ++ ++.+. ++-.++.||+.+. ++-++-|.+++........
T Consensus 346 ~~I~v~lPd~~~R~~Il~----~~-------l~--~~~l~-~dvdl~~LA~~T~-------GfSGADI~~l~~eA~~~Ai 404 (437)
T 4b4t_I 346 RKILFENPDLSTKKKILG----IH-------TS--KMNLS-EDVNLETLVTTKD-------DLSGADIQAMCTEAGLLAL 404 (437)
T ss_dssp EEECCCCCCHHHHHHHHH----HH-------HT--TSCBC-SCCCHHHHHHHCC-------SCCHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCcCHHHHHHHHH----HH-------hc--CCCCC-CcCCHHHHHHhCC-------CCCHHHHHHHHHHHHHHHH
Confidence 999999999999999994 11 11 22222 1112677777653 4445567777655433222
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
.+ ....|+.+.+.+.+.
T Consensus 405 r~---~~~~It~eDf~~Al~ 421 (437)
T 4b4t_I 405 RE---RRMQVTAEDFKQAKE 421 (437)
T ss_dssp HT---TCSCBCHHHHHHHHH
T ss_pred Hc---CCCccCHHHHHHHHH
Confidence 11 113456555555443
No 22
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=5.1e-21 Score=224.96 Aligned_cols=217 Identities=24% Similarity=0.348 Sum_probs=159.0
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG 261 (1165)
.++|.|.+++|+.|.+.+..+++++.+....+.. +|+++|||||||||||++|+++|.+++.+|+.++++++.+. |+|
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~-~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~-~vG 257 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR-APKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM-YIG 257 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC-CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSS-CSS
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC-CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhc-ccc
Confidence 4699999999999999998887776655432221 36899999999999999999999999999999999999885 999
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCc
Q psy2392 262 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 341 (1165)
Q Consensus 262 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 341 (1165)
.+ +..++.+|..+
T Consensus 258 es-e~~ir~lF~~A------------------------------------------------------------------ 270 (434)
T 4b4t_M 258 EG-AKLVRDAFALA------------------------------------------------------------------ 270 (434)
T ss_dssp HH-HHHHHHHHHHH------------------------------------------------------------------
T ss_pred hH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 88 56677777662
Q ss_pred EEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccce
Q psy2392 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 421 (1165)
Q Consensus 342 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 421 (1165)
.. ..++
T Consensus 271 ------------------------------------------------------------------------~~--~aP~ 276 (434)
T 4b4t_M 271 ------------------------------------------------------------------------KE--KAPT 276 (434)
T ss_dssp ------------------------------------------------------------------------HH--HCSE
T ss_pred ------------------------------------------------------------------------Hh--cCCe
Confidence 11 1489
Q ss_pred EEEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCC
Q psy2392 422 IIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 498 (1165)
Q Consensus 422 IifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~ 498 (1165)
||||||||.+++++.++. +++.....+...||..++|-. ..+++++|+|+ +.|+.++|+|+ |||+
T Consensus 277 IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~--------~~~~ViVIaaT----Nrp~~LD~AllRpGRfD 344 (434)
T 4b4t_M 277 IIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS--------SDDRVKVLAAT----NRVDVLDPALLRSGRLD 344 (434)
T ss_dssp EEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC--------SSCSSEEEEEC----SSCCCCCTTTCSTTSEE
T ss_pred EEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC--------CCCCEEEEEeC----CCchhcCHhHhcCCcee
Confidence 999999999998876522 122222234456888888732 34578888884 68999999996 5999
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
..|+|..++.++..+|++ .+++ ...+.-.+ .++.||+.+. ++-++-|.+++....
T Consensus 345 ~~I~i~lPd~~~R~~Il~----~~~~-------~~~~~~dv---dl~~lA~~t~-------G~sGADi~~l~~eA~ 399 (434)
T 4b4t_M 345 RKIEFPLPSEDSRAQILQ----IHSR-------KMTTDDDI---NWQELARSTD-------EFNGAQLKAVTVEAG 399 (434)
T ss_dssp EEEECCCCCHHHHHHHHH----HHHH-------HSCBCSCC---CHHHHHHHCS-------SCCHHHHHHHHHHHH
T ss_pred EEEEeCCcCHHHHHHHHH----HHhc-------CCCCCCcC---CHHHHHHhCC-------CCCHHHHHHHHHHHH
Confidence 999999999999999994 2211 11111111 2567777653 444556777766543
No 23
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.5e-21 Score=226.58 Aligned_cols=180 Identities=25% Similarity=0.375 Sum_probs=143.3
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG 261 (1165)
.++|+|.+++++.|.+++..+++++.++...+.. +|+++|||||||||||++|+++|.+++.+|+.++++++.+. |+|
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~-~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk-~~G 257 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIK-PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK-YIG 257 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC-CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCS-SSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCC-CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccc-cch
Confidence 4689999999999999999887777665433221 35899999999999999999999999999999999999885 999
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCc
Q psy2392 262 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 341 (1165)
Q Consensus 262 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 341 (1165)
.+ +..++.+|..+
T Consensus 258 es-e~~ir~~F~~A------------------------------------------------------------------ 270 (437)
T 4b4t_L 258 ES-ARIIREMFAYA------------------------------------------------------------------ 270 (437)
T ss_dssp HH-HHHHHHHHHHH------------------------------------------------------------------
T ss_pred HH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 87 55677777552
Q ss_pred EEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccce
Q psy2392 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 421 (1165)
Q Consensus 342 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 421 (1165)
.. ..++
T Consensus 271 ------------------------------------------------------------------------~~--~~P~ 276 (437)
T 4b4t_L 271 ------------------------------------------------------------------------KE--HEPC 276 (437)
T ss_dssp ------------------------------------------------------------------------HH--SCSE
T ss_pred ------------------------------------------------------------------------Hh--cCCc
Confidence 01 1589
Q ss_pred EEEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCC
Q psy2392 422 IIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 498 (1165)
Q Consensus 422 IifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~ 498 (1165)
||||||||.++.++.+.+ +.+.....+...||..|+|.. ..+++++|+|+ +.|+.++|+|+ |||+
T Consensus 277 IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~--------~~~~vivI~AT----Nrp~~LDpAllRpGRfD 344 (437)
T 4b4t_L 277 IIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD--------NLGQTKIIMAT----NRPDTLDPALLRPGRLD 344 (437)
T ss_dssp EEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS--------CTTSSEEEEEE----SSTTSSCTTTTSTTSEE
T ss_pred eeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc--------CCCCeEEEEec----CCchhhCHHHhCCCccc
Confidence 999999999998875422 222223345557888888732 34678888884 78999999997 6799
Q ss_pred eeEecCCCCHHHHHHHHh
Q psy2392 499 IRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~ 516 (1165)
..|+|..++.++..+|++
T Consensus 345 ~~I~i~lPd~~~R~~Il~ 362 (437)
T 4b4t_L 345 RKVEIPLPNEAGRLEIFK 362 (437)
T ss_dssp EEECCCCCCHHHHHHHHH
T ss_pred eeeecCCcCHHHHHHHHH
Confidence 999999999999999994
No 24
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=7.3e-21 Score=223.31 Aligned_cols=216 Identities=22% Similarity=0.326 Sum_probs=158.7
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG 261 (1165)
.++|.|++++|+.|.+.+..+++++.+....+.. +|.++|||||||||||++|+++|.+++.+|+.++++++.+. |+|
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~-pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk-~vG 285 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGID-PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQK-YVG 285 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCC-CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCC-SSS
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCC-CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcc-cCC
Confidence 4689999999999999998777666555432211 36899999999999999999999999999999999999885 999
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCc
Q psy2392 262 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 341 (1165)
Q Consensus 262 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 341 (1165)
.+ +..++.+|..+
T Consensus 286 es-ek~ir~lF~~A------------------------------------------------------------------ 298 (467)
T 4b4t_H 286 EG-ARMVRELFEMA------------------------------------------------------------------ 298 (467)
T ss_dssp HH-HHHHHHHHHHH------------------------------------------------------------------
T ss_pred HH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 88 56677777662
Q ss_pred EEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccce
Q psy2392 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 421 (1165)
Q Consensus 342 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 421 (1165)
.. ..++
T Consensus 299 ------------------------------------------------------------------------r~--~aP~ 304 (467)
T 4b4t_H 299 ------------------------------------------------------------------------RT--KKAC 304 (467)
T ss_dssp ------------------------------------------------------------------------HH--TCSE
T ss_pred ------------------------------------------------------------------------Hh--cCCc
Confidence 11 1489
Q ss_pred EEEEecchhhhccCCCCCC-CccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCC
Q psy2392 422 IIFLDEIDKITTRSSQNNN-TDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 498 (1165)
Q Consensus 422 IifiDEidki~~~~~~~~~-~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~ 498 (1165)
||||||||.++.++.+.++ .+.....+...||..|+|. -...++++|+|+ +.|+.++|+|+ |||+
T Consensus 305 IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~--------~~~~~ViVIaAT----Nrpd~LDpALlRpGRFD 372 (467)
T 4b4t_H 305 IIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF--------DPRGNIKVMFAT----NRPNTLDPALLRPGRID 372 (467)
T ss_dssp EEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS--------CCTTTEEEEEEC----SCTTSBCHHHHSTTTCC
T ss_pred eEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc--------CCCCcEEEEeCC----CCcccCChhhhcccccc
Confidence 9999999999988765322 2222223445667777763 245678899884 78999999997 5999
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
..|+|..++.++..+||+ .+ + .++.+.- +-.++.||+.+. ++-++-|.+++...
T Consensus 373 ~~I~i~lPd~~~R~~Ilk----~~-------l--~~~~l~~-dvdl~~LA~~T~-------GfSGADI~~l~~eA 426 (467)
T 4b4t_H 373 RKVEFSLPDLEGRANIFR----IH-------S--KSMSVER-GIRWELISRLCP-------NSTGAELRSVCTEA 426 (467)
T ss_dssp EEECCCCCCHHHHHHHHH----HH-------H--TTSCBCS-SCCHHHHHHHCC-------SCCHHHHHHHHHHH
T ss_pred EEEEeCCcCHHHHHHHHH----HH-------h--cCCCCCC-CCCHHHHHHHCC-------CCCHHHHHHHHHHH
Confidence 999999999999999994 11 1 2222221 112567777663 34455677776554
No 25
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.8e-20 Score=220.12 Aligned_cols=217 Identities=20% Similarity=0.369 Sum_probs=160.4
Q ss_pred hcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccc
Q psy2392 181 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 260 (1165)
Q Consensus 181 L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~Gyv 260 (1165)
-.++|.|.+++|+.|.+.+..+.+++.+....+.. +|+++|||||||||||++|+++|..++.+|+.++++++.+. |+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~-~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~-~~ 247 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGID-PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK-YL 247 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC-CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCS-SC
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCC-CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcc-cc
Confidence 35699999999999999998877766555432221 35899999999999999999999999999999999999885 99
Q ss_pred ccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCC
Q psy2392 261 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 340 (1165)
Q Consensus 261 G~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 340 (1165)
|.+ +..++++|..+
T Consensus 248 Ge~-e~~ir~lF~~A----------------------------------------------------------------- 261 (428)
T 4b4t_K 248 GEG-PRMVRDVFRLA----------------------------------------------------------------- 261 (428)
T ss_dssp SHH-HHHHHHHHHHH-----------------------------------------------------------------
T ss_pred chh-HHHHHHHHHHH-----------------------------------------------------------------
Confidence 988 56677777662
Q ss_pred cEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccc
Q psy2392 341 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 420 (1165)
Q Consensus 341 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 420 (1165)
.. ..+
T Consensus 262 -------------------------------------------------------------------------~~--~aP 266 (428)
T 4b4t_K 262 -------------------------------------------------------------------------RE--NAP 266 (428)
T ss_dssp -------------------------------------------------------------------------HH--TCS
T ss_pred -------------------------------------------------------------------------HH--cCC
Confidence 11 147
Q ss_pred eEEEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCC
Q psy2392 421 GIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRF 497 (1165)
Q Consensus 421 ~IifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~ 497 (1165)
+||||||||.++..+.+.. +.+.....+...||..++|- ....++++|+|+ +.|+.++|+|+ |||
T Consensus 267 ~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~--------~~~~~v~vI~aT----N~~~~LD~AllRpGRf 334 (428)
T 4b4t_K 267 SIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF--------DQSTNVKVIMAT----NRADTLDPALLRPGRL 334 (428)
T ss_dssp EEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS--------CSSCSEEEEEEE----SCSSSCCHHHHSSSSE
T ss_pred CeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC--------CCCCCEEEEEec----CChhhcChhhhcCCcc
Confidence 9999999999998875432 22323334566788888873 245678899884 68999999998 599
Q ss_pred CeeEecC-CCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 498 PIRVELD-SLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 498 ~~~v~~~-~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
+..|+|. .++.++...|++ .+ +. ++.+. ++-.++.||..+. ++-++-|.+++...
T Consensus 335 d~~I~~p~lPd~~~R~~Il~----~~-------~~--~~~l~-~~~dl~~lA~~t~-------G~sgadi~~l~~eA 390 (428)
T 4b4t_K 335 DRKIEFPSLRDRRERRLIFG----TI-------AS--KMSLA-PEADLDSLIIRND-------SLSGAVIAAIMQEA 390 (428)
T ss_dssp EEEEECCSSCCHHHHHHHHH----HH-------HH--SSCBC-TTCCHHHHHHHTT-------TCCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH----HH-------hc--CCCCC-cccCHHHHHHHCC-------CCCHHHHHHHHHHH
Confidence 9999995 689999999984 12 11 22221 1123677887663 34455677776554
No 26
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=9.4e-21 Score=220.48 Aligned_cols=180 Identities=20% Similarity=0.353 Sum_probs=139.5
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG 859 (1165)
|++|+|++++++.|.+.+..+++...+...... .+|+++|||||||||||++|+++|++++.+|+.++++++.++ |+|
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi-~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk-~vG 258 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGI-KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQK-YLG 258 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC-CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCS-SSS
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhc-cCc
Confidence 479999999999999999876544333321111 126999999999999999999999999999999999999998 999
Q ss_pred cChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCe
Q psy2392 860 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 939 (1165)
Q Consensus 860 ~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r 939 (1165)
++ +..++.+|..|..+
T Consensus 259 es-ek~ir~lF~~Ar~~--------------------------------------------------------------- 274 (437)
T 4b4t_I 259 DG-PRLCRQIFKVAGEN--------------------------------------------------------------- 274 (437)
T ss_dssp HH-HHHHHHHHHHHHHT---------------------------------------------------------------
T ss_pred hH-HHHHHHHHHHHHhc---------------------------------------------------------------
Confidence 98 46788888766222
Q ss_pred EEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC
Q psy2392 940 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 1019 (1165)
Q Consensus 940 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~g 1019 (1165)
+++
T Consensus 275 -----------------------------------------------------------------------------aP~ 277 (437)
T 4b4t_I 275 -----------------------------------------------------------------------------APS 277 (437)
T ss_dssp -----------------------------------------------------------------------------CSE
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 567
Q ss_pred eeeehhhhhhhccCCCCCC-CCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--cCC
Q psy2392 1020 IIFLDEIDKITTRSSQNNN-TDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFP 1096 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~~-~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~ 1096 (1165)
||||||||.|+..+...++ .+.....+...||..++| .-..+++++|+|+ +.|+.|.|+|++ ||.
T Consensus 278 IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg--------~~~~~~ViVIaAT----Nrpd~LDpALlRpGRfD 345 (437)
T 4b4t_I 278 IVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG--------FDDRGDVKVIMAT----NKIETLDPALIRPGRID 345 (437)
T ss_dssp EEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH--------CCCSSSEEEEEEE----SCSTTCCTTSSCTTTEE
T ss_pred EEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC--------cCCCCCEEEEEeC----CChhhcCHHHhcCCcee
Confidence 9999999999988644221 121111233345555554 3345678899986 589999999985 999
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
..|+|+.++.++..+||+
T Consensus 346 ~~I~v~lPd~~~R~~Il~ 363 (437)
T 4b4t_I 346 RKILFENPDLSTKKKILG 363 (437)
T ss_dssp EEECCCCCCHHHHHHHHH
T ss_pred EEEEcCCcCHHHHHHHHH
Confidence 999999999999999997
No 27
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.3e-20 Score=221.58 Aligned_cols=180 Identities=26% Similarity=0.390 Sum_probs=139.7
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG 859 (1165)
|++|+|.+++++.|.+.+..+++...+..... ..+|+++|||||||||||++|+++|++++.+|+.++++++.++ |+|
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g-~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~-~vG 257 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMG-IRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM-YIG 257 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC-CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSS-CSS
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC-CCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhc-ccc
Confidence 58999999999999999887655443332111 1126899999999999999999999999999999999999998 999
Q ss_pred cChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCe
Q psy2392 860 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 939 (1165)
Q Consensus 860 ~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r 939 (1165)
++ +..++.+|..|..+
T Consensus 258 es-e~~ir~lF~~A~~~--------------------------------------------------------------- 273 (434)
T 4b4t_M 258 EG-AKLVRDAFALAKEK--------------------------------------------------------------- 273 (434)
T ss_dssp HH-HHHHHHHHHHHHHH---------------------------------------------------------------
T ss_pred hH-HHHHHHHHHHHHhc---------------------------------------------------------------
Confidence 88 46788888766222
Q ss_pred EEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC
Q psy2392 940 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 1019 (1165)
Q Consensus 940 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~g 1019 (1165)
.++
T Consensus 274 -----------------------------------------------------------------------------aP~ 276 (434)
T 4b4t_M 274 -----------------------------------------------------------------------------APT 276 (434)
T ss_dssp -----------------------------------------------------------------------------CSE
T ss_pred -----------------------------------------------------------------------------CCe
Confidence 578
Q ss_pred eeeehhhhhhhccCCCCCC-CCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--cCC
Q psy2392 1020 IIFLDEIDKITTRSSQNNN-TDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFP 1096 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~~-~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~ 1096 (1165)
||||||||.|+..+....+ ++.....+-..||..|+|. -..+++++|+++ +.|+.|.|+|++ ||.
T Consensus 277 IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~--------~~~~~ViVIaaT----Nrp~~LD~AllRpGRfD 344 (434)
T 4b4t_M 277 IIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF--------SSDDRVKVLAAT----NRVDVLDPALLRSGRLD 344 (434)
T ss_dssp EEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS--------CSSCSSEEEEEC----SSCCCCCTTTCSTTSEE
T ss_pred EEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc--------CCCCCEEEEEeC----CCchhcCHhHhcCCcee
Confidence 9999999999987643211 1111112234577777763 234578888886 589999999965 999
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
..++|+.++.++..+||+
T Consensus 345 ~~I~i~lPd~~~R~~Il~ 362 (434)
T 4b4t_M 345 RKIEFPLPSEDSRAQILQ 362 (434)
T ss_dssp EEEECCCCCHHHHHHHHH
T ss_pred EEEEeCCcCHHHHHHHHH
Confidence 999999999999999997
No 28
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.1e-20 Score=219.42 Aligned_cols=180 Identities=24% Similarity=0.363 Sum_probs=139.7
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG 859 (1165)
+++|+|++++++.|.+.+..+++...+..... ..+|+++|||||||||||++|+++|++++.+|+.++++++.++ |+|
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G-i~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk-~vG 285 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLG-IDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQK-YVG 285 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCC-SSS
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC-CCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcc-cCC
Confidence 57999999999999999886554433322111 1126999999999999999999999999999999999999998 999
Q ss_pred cChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCe
Q psy2392 860 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 939 (1165)
Q Consensus 860 ~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r 939 (1165)
++ +..++++|..|..+
T Consensus 286 es-ek~ir~lF~~Ar~~--------------------------------------------------------------- 301 (467)
T 4b4t_H 286 EG-ARMVRELFEMARTK--------------------------------------------------------------- 301 (467)
T ss_dssp HH-HHHHHHHHHHHHHT---------------------------------------------------------------
T ss_pred HH-HHHHHHHHHHHHhc---------------------------------------------------------------
Confidence 98 46688888766222
Q ss_pred EEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC
Q psy2392 940 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 1019 (1165)
Q Consensus 940 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~g 1019 (1165)
+++
T Consensus 302 -----------------------------------------------------------------------------aP~ 304 (467)
T 4b4t_H 302 -----------------------------------------------------------------------------KAC 304 (467)
T ss_dssp -----------------------------------------------------------------------------CSE
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 567
Q ss_pred eeeehhhhhhhccCCCCC-CCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--cCC
Q psy2392 1020 IIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFP 1096 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~-~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~ 1096 (1165)
||||||||.|+..+.... +.+.....+...||..|+| .-..+++++|+++ +.|+.|.|+|++ ||.
T Consensus 305 IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg--------~~~~~~ViVIaAT----Nrpd~LDpALlRpGRFD 372 (467)
T 4b4t_H 305 IIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDG--------FDPRGNIKVMFAT----NRPNTLDPALLRPGRID 372 (467)
T ss_dssp EEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHS--------SCCTTTEEEEEEC----SCTTSBCHHHHSTTTCC
T ss_pred eEeecccccccccccCcCCCccHHHHHHHHHHHHHhhc--------cCCCCcEEEEeCC----CCcccCChhhhcccccc
Confidence 999999999998764322 2121122233455666664 2345678999986 589999999985 999
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
..++|+.++.++..+||+
T Consensus 373 ~~I~i~lPd~~~R~~Ilk 390 (467)
T 4b4t_H 373 RKVEFSLPDLEGRANIFR 390 (467)
T ss_dssp EEECCCCCCHHHHHHHHH
T ss_pred EEEEeCCcCHHHHHHHHH
Confidence 999999999999999997
No 29
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.82 E-value=1e-19 Score=204.46 Aligned_cols=231 Identities=26% Similarity=0.377 Sum_probs=166.4
Q ss_pred hhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc---CCCe
Q psy2392 768 KSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPF 844 (1165)
Q Consensus 768 ~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l---~~~f 844 (1165)
+.....++.+.|.+.++||+.+++.+...+... ..++..+.++ ..+++|+||||||||++|+++++.+ +.+|
T Consensus 4 ~~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~--~~~~~~~~~~---~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 4 EREKLLRLEEELHKRVVGQDEAIRAVADAIRRA--RAGLKDPNRP---IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp HHHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHH--HHTCSCTTSC---SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH--hcCCCCCCCC---ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 355677899999999999999999999999765 4455444333 4689999999999999999999998 5679
Q ss_pred EEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhH
Q psy2392 845 IKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTR 924 (1165)
Q Consensus 845 i~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r 924 (1165)
+.++++.+... ....++++.. ++.
T Consensus 79 ~~~~~~~~~~~--------~~~~~l~g~~-------------------------------------~~~----------- 102 (311)
T 4fcw_A 79 IRIDMTEYMEK--------HAVSRLIGAP-------------------------------------PGY----------- 102 (311)
T ss_dssp EEEEGGGCCST--------THHHHHHCCC-------------------------------------TTS-----------
T ss_pred EEeeccccccc--------ccHHHhcCCC-------------------------------------Ccc-----------
Confidence 99999886543 1222222100 000
Q ss_pred HHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCH
Q psy2392 925 QIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNE 1004 (1165)
Q Consensus 925 ~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~ 1004 (1165)
. |... .
T Consensus 103 -------------------------~--------~~~~------------------~----------------------- 108 (311)
T 4fcw_A 103 -------------------------V--------GYEE------------------G----------------------- 108 (311)
T ss_dssp -------------------------T--------TTTT------------------C-----------------------
T ss_pred -------------------------c--------cccc------------------c-----------------------
Confidence 0 0000 0
Q ss_pred HHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeee-eeccCceEEEEecCCCCC--
Q psy2392 1005 DEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHL-- 1081 (1165)
Q Consensus 1005 ~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~-~~~~t~~ilfI~~gaf~~-- 1081 (1165)
..+ ..++.. ...+|+||||||++... +|..||.++|...+.... ..++..+++||+++....
T Consensus 109 ~~~-~~~~~~-~~~~vl~lDEi~~l~~~-------------~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~ 173 (311)
T 4fcw_A 109 GQL-TEAVRR-RPYSVILFDAIEKAHPD-------------VFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPL 173 (311)
T ss_dssp CHH-HHHHHH-CSSEEEEEETGGGSCHH-------------HHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHH
T ss_pred chH-HHHHHh-CCCeEEEEeChhhcCHH-------------HHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHH
Confidence 000 111111 14589999999999654 999999999976654321 245667888999977510
Q ss_pred --------CC------------CCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHH
Q psy2392 1082 --------AK------------PSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDG 1141 (1165)
Q Consensus 1082 --------~~------------p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~a 1141 (1165)
.. +..|.|+|.+||+..+.|.|++.+++.+|+. ..+.++...+...+..+.|++++
T Consensus 174 i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~----~~l~~~~~~~~~~~~~~~~~~~~ 249 (311)
T 4fcw_A 174 ILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVE----IQMSYLRARLAEKRISLELTEAA 249 (311)
T ss_dssp HHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHH----HHTHHHHHHHHTTTCEEEECHHH
T ss_pred HHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHH----HHHHHHHHHHHhCCcEEEeCHHH
Confidence 00 2357899999999999999999999999999 66677777777778899999999
Q ss_pred HHHHHHHHhcc
Q psy2392 1142 IQRLAEIAYCI 1152 (1165)
Q Consensus 1142 i~~ia~~a~~~ 1152 (1165)
++.|+..++..
T Consensus 250 ~~~l~~~~~~~ 260 (311)
T 4fcw_A 250 KDFLAERGYDP 260 (311)
T ss_dssp HHHHHHHSCBT
T ss_pred HHHHHHhCCCc
Confidence 99999988854
No 30
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.3e-20 Score=219.69 Aligned_cols=180 Identities=25% Similarity=0.364 Sum_probs=141.0
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG 859 (1165)
|++|+|++++++.|.+.+..+++...+...... .+|+++|||||||||||++|+++|+.++.+|+.++++++.++ |+|
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~-~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk-~~G 257 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGI-KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK-YIG 257 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCS-SSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccc-cch
Confidence 489999999999999999876655444322111 126999999999999999999999999999999999999998 999
Q ss_pred cChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCe
Q psy2392 860 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 939 (1165)
Q Consensus 860 ~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r 939 (1165)
++ +..++.+|..|..+
T Consensus 258 es-e~~ir~~F~~A~~~--------------------------------------------------------------- 273 (437)
T 4b4t_L 258 ES-ARIIREMFAYAKEH--------------------------------------------------------------- 273 (437)
T ss_dssp HH-HHHHHHHHHHHHHS---------------------------------------------------------------
T ss_pred HH-HHHHHHHHHHHHhc---------------------------------------------------------------
Confidence 88 45688887666222
Q ss_pred EEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC
Q psy2392 940 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 1019 (1165)
Q Consensus 940 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~g 1019 (1165)
+++
T Consensus 274 -----------------------------------------------------------------------------~P~ 276 (437)
T 4b4t_L 274 -----------------------------------------------------------------------------EPC 276 (437)
T ss_dssp -----------------------------------------------------------------------------CSE
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 578
Q ss_pred eeeehhhhhhhccCCCC-CCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCC
Q psy2392 1020 IIFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 1096 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~-~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~ 1096 (1165)
||||||||.|+..+.+. .+.+.....+-..||..|+|. -..+++++|+|+ +.|+.|.|+|+ |||.
T Consensus 277 IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~--------~~~~~vivI~AT----Nrp~~LDpAllRpGRfD 344 (437)
T 4b4t_L 277 IIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF--------DNLGQTKIIMAT----NRPDTLDPALLRPGRLD 344 (437)
T ss_dssp EEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS--------SCTTSSEEEEEE----SSTTSSCTTTTSTTSEE
T ss_pred eeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc--------cCCCCeEEEEec----CCchhhCHHHhCCCccc
Confidence 99999999999876432 122222222345678888863 345678888885 58999999997 5799
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
..|+|+.++.++..+||+
T Consensus 345 ~~I~i~lPd~~~R~~Il~ 362 (437)
T 4b4t_L 345 RKVEIPLPNEAGRLEIFK 362 (437)
T ss_dssp EEECCCCCCHHHHHHHHH
T ss_pred eeeecCCcCHHHHHHHHH
Confidence 999999999999999998
No 31
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=6.3e-20 Score=215.58 Aligned_cols=181 Identities=22% Similarity=0.395 Sum_probs=139.8
Q ss_pred hhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccc
Q psy2392 779 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 858 (1165)
Q Consensus 779 L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~Gyv 858 (1165)
-+++|+|++++|+.|.+.+..+++...+..... ..+|+++|||||||||||++|+++|+.++.+|+.++++++.++ |+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g-~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~-~~ 247 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIG-IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK-YL 247 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC-CCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCS-SC
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC-CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcc-cc
Confidence 358999999999999999987654433322111 1126899999999999999999999999999999999999998 99
Q ss_pred ccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCC
Q psy2392 859 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 938 (1165)
Q Consensus 859 G~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~ 938 (1165)
|++ +..++++|..|..+
T Consensus 248 Ge~-e~~ir~lF~~A~~~-------------------------------------------------------------- 264 (428)
T 4b4t_K 248 GEG-PRMVRDVFRLAREN-------------------------------------------------------------- 264 (428)
T ss_dssp SHH-HHHHHHHHHHHHHT--------------------------------------------------------------
T ss_pred chh-HHHHHHHHHHHHHc--------------------------------------------------------------
Confidence 988 45688888766222
Q ss_pred eEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q psy2392 939 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 1018 (1165)
Q Consensus 939 r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 1018 (1165)
.+
T Consensus 265 ------------------------------------------------------------------------------aP 266 (428)
T 4b4t_K 265 ------------------------------------------------------------------------------AP 266 (428)
T ss_dssp ------------------------------------------------------------------------------CS
T ss_pred ------------------------------------------------------------------------------CC
Confidence 46
Q ss_pred CeeeehhhhhhhccCCCCC-CCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--cC
Q psy2392 1019 GIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RF 1095 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~-~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~ 1095 (1165)
+|+||||||.++..+.... +.+.....+-..||..++| .....++++||++ +.|+.+.|+|++ ||
T Consensus 267 ~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg--------~~~~~~v~vI~aT----N~~~~LD~AllRpGRf 334 (428)
T 4b4t_K 267 SIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDG--------FDQSTNVKVIMAT----NRADTLDPALLRPGRL 334 (428)
T ss_dssp EEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHH--------SCSSCSEEEEEEE----SCSSSCCHHHHSSSSE
T ss_pred CeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhC--------CCCCCCEEEEEec----CChhhcChhhhcCCcc
Confidence 8999999999998864322 2222222244567777775 3345678899886 589999999984 99
Q ss_pred CeEEEcC-CCCHHHHHHHHh
Q psy2392 1096 PIRVELD-SLSISDFTRIMT 1114 (1165)
Q Consensus 1096 ~i~v~l~-~l~~~~l~~il~ 1114 (1165)
...|+|+ .++.++...||+
T Consensus 335 d~~I~~p~lPd~~~R~~Il~ 354 (428)
T 4b4t_K 335 DRKIEFPSLRDRRERRLIFG 354 (428)
T ss_dssp EEEEECCSSCCHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 9999996 678999888887
No 32
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.80 E-value=2.2e-19 Score=218.30 Aligned_cols=284 Identities=18% Similarity=0.238 Sum_probs=186.1
Q ss_pred HhhhccccCchhhhhhhhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHH
Q psy2392 155 ALQENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEI 234 (1165)
Q Consensus 155 ~l~~~t~l~~~~i~~~~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~l 234 (1165)
.+...+.+||.....+...+.++.+.|+++++|+++++..+...+... ..... . +..+++|+||||||||++
T Consensus 53 ~l~~~~~lp~~~~~~~~~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~--~~~~~--~----~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 53 YIDWLVALPWTDETDDKLDLKEAGRLLDEEHHGLEKVKERILEYLAVQ--KLTKS--L----KGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp HHHHHHHSCSSCCCCCCCCTTTGGGTHHHHCSSCHHHHHHHHHHHHHH--HHSSS--C----CSCEEEEESSSSSSHHHH
T ss_pred HHHHHhcCCCCccccccccHHHHHHHHHHHhccHHHHHHHHHHHHHHH--Hhccc--C----CCCEEEEECCCCCCHHHH
Confidence 344446788877776666677778889999999999999988766543 21111 1 246999999999999999
Q ss_pred HHHHHHHhCCCceEEeccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCcc
Q psy2392 235 ARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDT 314 (1165)
Q Consensus 235 Ak~lA~~l~~~~i~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 314 (1165)
|+++|..++.++..++++.+... ..++..... .+
T Consensus 125 ar~ia~~l~~~~~~i~~~~~~~~-----------~~~~g~~~~-------------------------~i---------- 158 (543)
T 3m6a_A 125 AKSIAKSLGRKFVRISLGGVRDE-----------SEIRGHRRT-------------------------YV---------- 158 (543)
T ss_dssp HHHHHHHHTCEEEEECCCC-------------------------------------------------------------
T ss_pred HHHHHHhcCCCeEEEEecccchh-----------hhhhhHHHH-------------------------Hh----------
Confidence 99999999999999998764321 111111000 00
Q ss_pred ccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHH
Q psy2392 315 DFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKL 394 (1165)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (1165)
| .+...+.+.|
T Consensus 159 ---------------------g---------------------------~~~~~~~~~~--------------------- 169 (543)
T 3m6a_A 159 ---------------------G---------------------------AMPGRIIQGM--------------------- 169 (543)
T ss_dssp -----------------------------------------------------CHHHHH---------------------
T ss_pred ---------------------c---------------------------cCchHHHHHH---------------------
Confidence 0 0000000000
Q ss_pred HHHHHHHhhcChhHHHHHHHhhh-ccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceee---eece--ee
Q psy2392 395 LIDEEANKLLNEDEIQQKAINNV-EQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN---TKYG--II 468 (1165)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~a~~~~-~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~---~~~~--~~ 468 (1165)
..+ ..++|+||||||++.+..++ .+|..||.++|..... ..+. .+
T Consensus 170 --------------------~~a~~~~~vl~lDEid~l~~~~~~---------~~~~~LL~~ld~~~~~~~~~~~~~~~~ 220 (543)
T 3m6a_A 170 --------------------KKAGKLNPVFLLDEIDKMSSDFRG---------DPSSAMLEVLDPEQNSSFSDHYIEETF 220 (543)
T ss_dssp --------------------HTTCSSSEEEEEEESSSCC------------------CCGGGTCTTTTTBCCCSSSCCCC
T ss_pred --------------------HHhhccCCEEEEhhhhhhhhhhcc---------CHHHHHHHHHhhhhcceeecccCCeee
Confidence 111 14569999999999876432 2567899999864322 2222 34
Q ss_pred cCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHH
Q psy2392 469 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLA 548 (1165)
Q Consensus 469 ~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la 548 (1165)
+..+++||+|. +.++.+.|+|++||.+ +.|.+|+.++..+|+. ..++.++.+........+.+++++++.|+
T Consensus 221 ~~~~v~iI~tt----N~~~~l~~aL~~R~~v-i~~~~~~~~e~~~Il~---~~l~~~~~~~~~~~~~~i~i~~~~l~~l~ 292 (543)
T 3m6a_A 221 DLSKVLFIATA----NNLATIPGPLRDRMEI-INIAGYTEIEKLEIVK---DHLLPKQIKEHGLKKSNLQLRDQAILDII 292 (543)
T ss_dssp BCSSCEEEEEC----SSTTTSCHHHHHHEEE-EECCCCCHHHHHHHHH---HTHHHHHHHHTTCCGGGCEECHHHHHHHH
T ss_pred cccceEEEecc----CccccCCHHHHhhcce-eeeCCCCHHHHHHHHH---HHHHHHHHHHcCCCcccccCCHHHHHHHH
Confidence 55789999885 4577899999999974 7999999999999996 44444333322222237899999999998
Q ss_pred HHHHhccccCCccCcchhHHHHHHHHHHhhcccCCC---eeEEcccccccccccCcccc
Q psy2392 549 EIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNI---SLLVDADYVNSRLGDLSINE 604 (1165)
Q Consensus 549 ~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~~~~---~~~i~~~~v~~~~~~~~~~~ 604 (1165)
+ .|. ...|+|.|++.|++++......+... .+.||.+.+++.++......
T Consensus 293 ~-~~~-----~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~~~~~ 345 (543)
T 3m6a_A 293 R-YYT-----REAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKRIFRY 345 (543)
T ss_dssp H-HHC-----CCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSCCSCC
T ss_pred H-hCC-----hhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCcccCc
Confidence 8 443 25899999999999987766543322 27899999999888765433
No 33
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.78 E-value=3.2e-18 Score=194.95 Aligned_cols=217 Identities=19% Similarity=0.327 Sum_probs=163.4
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh-CCCceEEecccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS-NAPFIKIEATKFTEVGYV 260 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l-~~~~i~ld~s~~~~~Gyv 260 (1165)
.++|+|++++++.|.+++..+.++..+..+... ++.++||+||||||||++|+++|+.+ +.+|+.++++++.+. |+
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~--~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~-~~ 87 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRT--PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK-WL 87 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCC--CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS-SC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCC--CCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh-hh
Confidence 358999999999999999888777777654322 35899999999999999999999999 899999999998764 88
Q ss_pred ccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCC
Q psy2392 261 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 340 (1165)
Q Consensus 261 G~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 340 (1165)
|.. +..++.+|..+
T Consensus 88 g~~-~~~~~~lf~~a----------------------------------------------------------------- 101 (322)
T 1xwi_A 88 GES-EKLVKNLFQLA----------------------------------------------------------------- 101 (322)
T ss_dssp CSC-HHHHHHHHHHH-----------------------------------------------------------------
T ss_pred hHH-HHHHHHHHHHH-----------------------------------------------------------------
Confidence 876 44455555441
Q ss_pred cEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccc
Q psy2392 341 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 420 (1165)
Q Consensus 341 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 420 (1165)
. ...+
T Consensus 102 -------------------------------------------------------------------------~--~~~~ 106 (322)
T 1xwi_A 102 -------------------------------------------------------------------------R--ENKP 106 (322)
T ss_dssp -------------------------------------------------------------------------H--HTSS
T ss_pred -------------------------------------------------------------------------H--hcCC
Confidence 0 0147
Q ss_pred eEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCee
Q psy2392 421 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIR 500 (1165)
Q Consensus 421 ~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~ 500 (1165)
+||||||||.+++.+.... .+ ....+++.||..++|.. ....++++|+++ +.|..+.|+|++||+.+
T Consensus 107 ~vl~iDEid~l~~~~~~~~-~~-~~~~~~~~ll~~ld~~~-------~~~~~v~vI~at----n~~~~ld~al~rRf~~~ 173 (322)
T 1xwi_A 107 SIIFIDEIDSLCGSRSENE-SE-AARRIKTEFLVQMQGVG-------VDNDGILVLGAT----NIPWVLDSAIRRRFEKR 173 (322)
T ss_dssp EEEEEETTTGGGCCSSSCC-TT-HHHHHHHHHHHHHHCSS-------SCCTTEEEEEEE----SCTTTSCHHHHHTCCEE
T ss_pred cEEEeecHHHhcccccccc-ch-HHHHHHHHHHHHHhccc-------ccCCCEEEEEec----CCcccCCHHHHhhcCeE
Confidence 8999999999998765421 12 23346778888888732 134678888885 67889999999999999
Q ss_pred EecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHH
Q psy2392 501 VELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 575 (1165)
Q Consensus 501 v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~ 575 (1165)
+.+..++.++..+|++ ..+. +..+.+++..++.|++.+. ++-.+-|..++.....
T Consensus 174 i~i~~P~~~~r~~il~-----------~~l~--~~~~~l~~~~l~~la~~t~-------G~sgadl~~l~~~A~~ 228 (322)
T 1xwi_A 174 IYIPLPEPHARAAMFK-----------LHLG--TTQNSLTEADFRELGRKTD-------GYSGADISIIVRDALM 228 (322)
T ss_dssp EECCCCCHHHHHHHHH-----------HHHT--TCCBCCCHHHHHHHHHTCT-------TCCHHHHHHHHHHHHT
T ss_pred EEeCCcCHHHHHHHHH-----------HHHh--cCCCCCCHHHHHHHHHHcC-------CCCHHHHHHHHHHHHH
Confidence 9999999999999984 1222 3344568899999988663 4555677777766553
No 34
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=196.67 Aligned_cols=200 Identities=21% Similarity=0.359 Sum_probs=150.5
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc-CCCeEEEecCCccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS-NAPFIKIEATKFTEVGYV 858 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l-~~~fi~l~~se~~~~Gyv 858 (1165)
+++|+|++++++.|.+.+..+.+...+..+.. .+++++||+||||||||++|+++|+.+ +.+|+.++++++.+. |+
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~--~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~-~~ 87 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKR--TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK-WL 87 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTC--CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS-SC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCC--CCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh-hh
Confidence 57999999999999999987766665554322 235899999999999999999999999 899999999999887 88
Q ss_pred ccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCC
Q psy2392 859 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 938 (1165)
Q Consensus 859 G~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~ 938 (1165)
|.. +..++.+|..+..
T Consensus 88 g~~-~~~~~~lf~~a~~--------------------------------------------------------------- 103 (322)
T 1xwi_A 88 GES-EKLVKNLFQLARE--------------------------------------------------------------- 103 (322)
T ss_dssp CSC-HHHHHHHHHHHHH---------------------------------------------------------------
T ss_pred hHH-HHHHHHHHHHHHh---------------------------------------------------------------
Confidence 877 3456666544310
Q ss_pred eEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q psy2392 939 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 1018 (1165)
Q Consensus 939 r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 1018 (1165)
.++
T Consensus 104 -----------------------------------------------------------------------------~~~ 106 (322)
T 1xwi_A 104 -----------------------------------------------------------------------------NKP 106 (322)
T ss_dssp -----------------------------------------------------------------------------TSS
T ss_pred -----------------------------------------------------------------------------cCC
Confidence 146
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeE
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIR 1098 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~ 1098 (1165)
+||||||||.++...... ..+. ...++..||..++|.. ....++++|+++ +.|+.+.|.|++||+.+
T Consensus 107 ~vl~iDEid~l~~~~~~~-~~~~-~~~~~~~ll~~ld~~~-------~~~~~v~vI~at----n~~~~ld~al~rRf~~~ 173 (322)
T 1xwi_A 107 SIIFIDEIDSLCGSRSEN-ESEA-ARRIKTEFLVQMQGVG-------VDNDGILVLGAT----NIPWVLDSAIRRRFEKR 173 (322)
T ss_dssp EEEEEETTTGGGCCSSSC-CTTH-HHHHHHHHHHHHHCSS-------SCCTTEEEEEEE----SCTTTSCHHHHHTCCEE
T ss_pred cEEEeecHHHhccccccc-cchH-HHHHHHHHHHHHhccc-------ccCCCEEEEEec----CCcccCCHHHHhhcCeE
Confidence 799999999998775432 1122 2346778888888632 134678888886 57889999999999999
Q ss_pred EEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1099 VELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
+.++.++.++..+||+ .+++..+. .++++.++.||+.+
T Consensus 174 i~i~~P~~~~r~~il~-----------~~l~~~~~--~l~~~~l~~la~~t 211 (322)
T 1xwi_A 174 IYIPLPEPHARAAMFK-----------LHLGTTQN--SLTEADFRELGRKT 211 (322)
T ss_dssp EECCCCCHHHHHHHHH-----------HHHTTCCB--CCCHHHHHHHHHTC
T ss_pred EEeCCcCHHHHHHHHH-----------HHHhcCCC--CCCHHHHHHHHHHc
Confidence 9999999999999998 22332232 44566666666543
No 35
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.76 E-value=2.8e-18 Score=195.13 Aligned_cols=201 Identities=18% Similarity=0.334 Sum_probs=148.3
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG 859 (1165)
+++|+|++.+++.|...+..+.+...+..... .++.++||+||||||||++|+++|+.++.+|+.++++++.+. |+|
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~--~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~-~~g 93 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNR--KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK-WMG 93 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTC--CCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT-TGG
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCC--CCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc-ccc
Confidence 47899999999999999987655554443322 235899999999999999999999999999999999998776 777
Q ss_pred cChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCe
Q psy2392 860 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 939 (1165)
Q Consensus 860 ~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r 939 (1165)
.. +..++.+|..+.
T Consensus 94 ~~-~~~~~~~f~~a~----------------------------------------------------------------- 107 (322)
T 3eie_A 94 ES-EKLVKQLFAMAR----------------------------------------------------------------- 107 (322)
T ss_dssp GH-HHHHHHHHHHHH-----------------------------------------------------------------
T ss_pred hH-HHHHHHHHHHHH-----------------------------------------------------------------
Confidence 65 344555554330
Q ss_pred EEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC
Q psy2392 940 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 1019 (1165)
Q Consensus 940 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~g 1019 (1165)
..+++
T Consensus 108 ---------------------------------------------------------------------------~~~~~ 112 (322)
T 3eie_A 108 ---------------------------------------------------------------------------ENKPS 112 (322)
T ss_dssp ---------------------------------------------------------------------------HTSSE
T ss_pred ---------------------------------------------------------------------------hcCCe
Confidence 01468
Q ss_pred eeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeEE
Q psy2392 1020 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRV 1099 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v 1099 (1165)
||||||||.+....... ..+ ....++..||..+++.. ....++++|++. +.|+.+.|.|++||...+
T Consensus 113 vl~iDEid~l~~~~~~~-~~~-~~~~~~~~ll~~l~~~~-------~~~~~v~vi~at----n~~~~ld~al~~Rf~~~i 179 (322)
T 3eie_A 113 IIFIDQVDALTGTRGEG-ESE-ASRRIKTELLVQMNGVG-------NDSQGVLVLGAT----NIPWQLDSAIRRRFERRI 179 (322)
T ss_dssp EEEEECGGGGSCC-------C-CTHHHHHHHHHHHGGGG-------TSCCCEEEEEEE----SCGGGSCHHHHHHCCEEE
T ss_pred EEEechhhhhhccCCCC-cch-HHHHHHHHHHHHhcccc-------ccCCceEEEEec----CChhhCCHHHHcccCeEE
Confidence 99999999998765321 122 23347888998888632 134568888886 478899999999999999
Q ss_pred EcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1100 ELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1100 ~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
.++.++.++..+||+ .+++..+ +.++++.++.||+.+.
T Consensus 180 ~~~~p~~~~r~~il~-----------~~~~~~~--~~~~~~~l~~la~~t~ 217 (322)
T 3eie_A 180 YIPLPDLAARTTMFE-----------INVGDTP--CVLTKEDYRTLGAMTE 217 (322)
T ss_dssp ECCCCCHHHHHHHHH-----------HHHTTCC--CCCCHHHHHHHHHTTT
T ss_pred EeCCCCHHHHHHHHH-----------HHhccCC--CCCCHHHHHHHHHHcC
Confidence 999999999999998 2333333 3556777777776543
No 36
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.76 E-value=4.5e-18 Score=193.43 Aligned_cols=215 Identities=17% Similarity=0.338 Sum_probs=157.2
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|++.+++.+.+++..+.++..+...... ++.++||+||||||||++|+++|+.++.+|+.++++++.+. |+|.
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~--~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~-~~g~ 94 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRK--PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK-WMGE 94 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCC--CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT-TGGG
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCC--CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc-ccch
Confidence 47999999999999999877666655444322 35899999999999999999999999999999999988664 7765
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. +..++.+|..+
T Consensus 95 ~-~~~~~~~f~~a------------------------------------------------------------------- 106 (322)
T 3eie_A 95 S-EKLVKQLFAMA------------------------------------------------------------------- 106 (322)
T ss_dssp H-HHHHHHHHHHH-------------------------------------------------------------------
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 5 33344444331
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
. ...++|
T Consensus 107 -----------------------------------------------------------------------~--~~~~~v 113 (322)
T 3eie_A 107 -----------------------------------------------------------------------R--ENKPSI 113 (322)
T ss_dssp -----------------------------------------------------------------------H--HTSSEE
T ss_pred -----------------------------------------------------------------------H--hcCCeE
Confidence 0 014789
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEe
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVE 502 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~ 502 (1165)
|||||||.+...+... ..+ ....++..||..+++.. -...++++|+++ +.|..+.|+|++||+..+.
T Consensus 114 l~iDEid~l~~~~~~~-~~~-~~~~~~~~ll~~l~~~~-------~~~~~v~vi~at----n~~~~ld~al~~Rf~~~i~ 180 (322)
T 3eie_A 114 IFIDQVDALTGTRGEG-ESE-ASRRIKTELLVQMNGVG-------NDSQGVLVLGAT----NIPWQLDSAIRRRFERRIY 180 (322)
T ss_dssp EEEECGGGGSCC-------C-CTHHHHHHHHHHHGGGG-------TSCCCEEEEEEE----SCGGGSCHHHHHHCCEEEE
T ss_pred EEechhhhhhccCCCC-cch-HHHHHHHHHHHHhcccc-------ccCCceEEEEec----CChhhCCHHHHcccCeEEE
Confidence 9999999998865431 112 23457788898888632 124568888884 5788899999999999999
Q ss_pred cCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 503 LDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 503 ~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
+..++.++..+|++ ..+. +..+.++++.++.|++.+. ++-.+-|..++....
T Consensus 181 ~~~p~~~~r~~il~-----------~~~~--~~~~~~~~~~l~~la~~t~-------g~sg~di~~l~~~a~ 232 (322)
T 3eie_A 181 IPLPDLAARTTMFE-----------INVG--DTPCVLTKEDYRTLGAMTE-------GYSGSDIAVVVKDAL 232 (322)
T ss_dssp CCCCCHHHHHHHHH-----------HHHT--TCCCCCCHHHHHHHHHTTT-------TCCHHHHHHHHHHHT
T ss_pred eCCCCHHHHHHHHH-----------HHhc--cCCCCCCHHHHHHHHHHcC-------CCCHHHHHHHHHHHH
Confidence 99999999999984 1222 3445678999999988763 344566777766543
No 37
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.76 E-value=2.8e-18 Score=192.70 Aligned_cols=229 Identities=16% Similarity=0.247 Sum_probs=158.9
Q ss_pred hHHHHHHHHhcccEecchhhHHHHHHHHHhhh-----hhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhC---
Q psy2392 172 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRW-----RRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN--- 243 (1165)
Q Consensus 172 ~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~-----~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~--- 243 (1165)
..+.++...|+++|+||+.+++.+.+.+...+ .+.|+... ..+.++||+||||||||++|+++|+.++
T Consensus 20 ~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~----~~~~~vll~G~~GtGKT~la~~la~~l~~~~ 95 (309)
T 3syl_A 20 SGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHE----TPTLHMSFTGNPGTGKTTVALKMAGLLHRLG 95 (309)
T ss_dssp TTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS----CCCCEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC----CCCceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 45678888899899999999999998765432 12333332 1246899999999999999999999983
Q ss_pred ----CCceEEeccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCc
Q psy2392 244 ----APFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNE 319 (1165)
Q Consensus 244 ----~~~i~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 319 (1165)
.+++.++++++... |.|.... .+..++..
T Consensus 96 ~~~~~~~~~~~~~~l~~~-~~g~~~~-~~~~~~~~--------------------------------------------- 128 (309)
T 3syl_A 96 YVRKGHLVSVTRDDLVGQ-YIGHTAP-KTKEVLKR--------------------------------------------- 128 (309)
T ss_dssp SSSSCCEEEECGGGTCCS-STTCHHH-HHHHHHHH---------------------------------------------
T ss_pred CcCCCcEEEEcHHHhhhh-cccccHH-HHHHHHHh---------------------------------------------
Confidence 37888998887543 5554421 11111111
Q ss_pred CcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHH
Q psy2392 320 NNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEE 399 (1165)
Q Consensus 320 ~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1165)
T Consensus 129 -------------------------------------------------------------------------------- 128 (309)
T 3syl_A 129 -------------------------------------------------------------------------------- 128 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeC
Q psy2392 400 ANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASG 479 (1165)
Q Consensus 400 ~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~g 479 (1165)
+ .++||||||||.+.....+ +.....++..|+.++|.. ..++.+|+++
T Consensus 129 -----------------~-~~~vl~iDEid~l~~~~~~----~~~~~~~~~~Ll~~l~~~----------~~~~~~i~~~ 176 (309)
T 3syl_A 129 -----------------A-MGGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENN----------RDDLVVILAG 176 (309)
T ss_dssp -----------------H-TTSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHHC----------TTTCEEEEEE
T ss_pred -----------------c-CCCEEEEEChhhhccCCCc----ccccHHHHHHHHHHHhcC----------CCCEEEEEeC
Confidence 1 4679999999999865432 122345788999999852 3566788876
Q ss_pred Cccc-CCCCCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccC
Q psy2392 480 AFHL-AKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERT 558 (1165)
Q Consensus 480 af~~-~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~ 558 (1165)
+... .....+.|.|++||+..|.|++++.+++.+|+. .. +...+ +.+++++++.+++.+.......
T Consensus 177 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~----~~-------l~~~~--~~~~~~~~~~l~~~~~~~~~~~ 243 (309)
T 3syl_A 177 YADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAG----HM-------LDDQN--YQMTPEAETALRAYIGLRRNQP 243 (309)
T ss_dssp CHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHH----HH-------HHHTT--CEECHHHHHHHHHHHHHHTTSS
T ss_pred ChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHH----HH-------HHHcC--CCCCHHHHHHHHHHHHHhccCC
Confidence 4221 001124599999999999999999999999994 22 22334 5789999999999875432222
Q ss_pred CccCcchhHHHHHHHHHH
Q psy2392 559 ENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 559 ~~~GAR~l~~~ie~~l~~ 576 (1165)
..+.+|.|++++++++..
T Consensus 244 ~~gn~r~l~~~l~~a~~~ 261 (309)
T 3syl_A 244 HFANARSIRNALDRARLR 261 (309)
T ss_dssp SCCHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 234499999999998754
No 38
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.74 E-value=1.8e-17 Score=191.35 Aligned_cols=218 Identities=17% Similarity=0.329 Sum_probs=155.3
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|++.+++.|..++..+.++..+...... ++.++||+||||||||++|+++|+.++.+|+.++++++.+. |+|.
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~--~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~-~~g~ 127 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRK--PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK-WMGE 127 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCC--CCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC-C---
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCC--CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh-hcch
Confidence 58999999999999998876666655543221 34799999999999999999999999999999999987653 7766
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. +..++.+|..+
T Consensus 128 ~-~~~~~~~f~~a------------------------------------------------------------------- 139 (355)
T 2qp9_X 128 S-EKLVKQLFAMA------------------------------------------------------------------- 139 (355)
T ss_dssp C-HHHHHHHHHHH-------------------------------------------------------------------
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 5 33344444331
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
. ...++|
T Consensus 140 -----------------------------------------------------------------------~--~~~~~v 146 (355)
T 2qp9_X 140 -----------------------------------------------------------------------R--ENKPSI 146 (355)
T ss_dssp -----------------------------------------------------------------------H--HTSSEE
T ss_pred -----------------------------------------------------------------------H--HcCCeE
Confidence 0 014789
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEe
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVE 502 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~ 502 (1165)
|||||||.+...+... ..+ ....+++.||..++|.. ....+++||+++ +.|..+.|+|++||+..+.
T Consensus 147 l~iDEid~l~~~r~~~-~~~-~~~~~~~~ll~~l~~~~-------~~~~~v~vI~at----n~~~~ld~al~rRf~~~i~ 213 (355)
T 2qp9_X 147 IFIDQVDALTGTRGEG-ESE-ASRRIKTELLVQMNGVG-------NDSQGVLVLGAT----NIPWQLDSAIRRRFERRIY 213 (355)
T ss_dssp EEEECGGGGTC-------CT-HHHHHHHHHHHHHHHCC----------CCEEEEEEE----SCGGGSCHHHHHTCCEEEE
T ss_pred EEEechHhhcccCCCC-cch-HHHHHHHHHHHHhhccc-------ccCCCeEEEeec----CCcccCCHHHHcccCEEEE
Confidence 9999999998765431 112 23446778888888632 123568888884 5678899999999999999
Q ss_pred cCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 503 LDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 503 ~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
+..++.++..+|+. ..+. +..+.+++..++.|++.+. ++-.|-|..++..++...
T Consensus 214 i~~P~~~~r~~il~-----------~~l~--~~~~~~~~~~l~~la~~t~-------G~sg~dl~~l~~~A~~~a 268 (355)
T 2qp9_X 214 IPLPDLAARTTMFE-----------INVG--DTPSVLTKEDYRTLGAMTE-------GYSGSDIAVVVKDALMQP 268 (355)
T ss_dssp CCCCCHHHHHHHHH-----------HHHT--TSCBCCCHHHHHHHHHHTT-------TCCHHHHHHHHHHHHHHH
T ss_pred eCCcCHHHHHHHHH-----------HHHh--hCCCCCCHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHH
Confidence 99999999999984 1222 2334578999999998773 345677888887765443
No 39
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.74 E-value=2.6e-17 Score=195.52 Aligned_cols=216 Identities=20% Similarity=0.342 Sum_probs=154.5
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh-CCCceEEeccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS-NAPFIKIEATKFTEVGYVG 261 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l-~~~~i~ld~s~~~~~GyvG 261 (1165)
++|+|++.+++.|.+++..+.++..+..... .++.++||+||||||||++|+++|+.+ +.+|+.++++++.+. |+|
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~--~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~-~~g 210 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKR--TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK-WLG 210 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGG--CCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccC--CCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh-hcc
Confidence 5799999999999999877666655544322 134899999999999999999999999 899999999988764 777
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCc
Q psy2392 262 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 341 (1165)
Q Consensus 262 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 341 (1165)
.. +..++.+|..+
T Consensus 211 ~~-~~~~~~~f~~a------------------------------------------------------------------ 223 (444)
T 2zan_A 211 ES-EKLVKNLFQLA------------------------------------------------------------------ 223 (444)
T ss_dssp -C-CCTHHHHHHHH------------------------------------------------------------------
T ss_pred hH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 65 33344444331
Q ss_pred EEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccce
Q psy2392 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 421 (1165)
Q Consensus 342 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 421 (1165)
. ...++
T Consensus 224 ------------------------------------------------------------------------~--~~~~~ 229 (444)
T 2zan_A 224 ------------------------------------------------------------------------R--ENKPS 229 (444)
T ss_dssp ------------------------------------------------------------------------H--HSCSE
T ss_pred ------------------------------------------------------------------------H--HcCCe
Confidence 0 01478
Q ss_pred EEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeE
Q psy2392 422 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRV 501 (1165)
Q Consensus 422 IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v 501 (1165)
||||||||.+++.+... ..+ ....+++.||..++|.. ....+++||+++ +.|..+.|+|++||+.++
T Consensus 230 vl~iDEid~l~~~~~~~-~~~-~~~~~~~~lL~~l~~~~-------~~~~~v~vI~at----n~~~~ld~al~rRf~~~i 296 (444)
T 2zan_A 230 IIFIDEIDSLCGSRSEN-ESE-AARRIKTEFLVQMQGVG-------VDNDGILVLGAT----NIPWVLDSAIRRRFEKRI 296 (444)
T ss_dssp EEEESCTTTTCCCSSCC-CCG-GGHHHHHHHHTTTTCSS-------CCCSSCEEEEEE----SCGGGSCHHHHTTCCEEE
T ss_pred EEEEechHhhccCCCCc-ccc-HHHHHHHHHHHHHhCcc-------cCCCCEEEEecC----CCccccCHHHHhhcceEE
Confidence 99999999998775542 122 23357788999998732 134678888885 567889999999999999
Q ss_pred ecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHH
Q psy2392 502 ELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 575 (1165)
Q Consensus 502 ~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~ 575 (1165)
.+..++.++...|+. ..+. +..+.+++..++.|++.+. ++-.+-|..++...+.
T Consensus 297 ~i~~P~~~~r~~il~-----------~~l~--~~~~~l~~~~l~~la~~t~-------G~sgadl~~l~~~a~~ 350 (444)
T 2zan_A 297 YIPLPEAHARAAMFR-----------LHLG--STQNSLTEADFQELGRKTD-------GYSGADISIIVRDALM 350 (444)
T ss_dssp ECCCCCHHHHHHHHH-----------HHHT--TSCEECCHHHHHHHHHHTT-------TCCHHHHHHHHHHHHT
T ss_pred EeCCcCHHHHHHHHH-----------HHHh--cCCCCCCHHHHHHHHHHcC-------CCCHHHHHHHHHHHHH
Confidence 999999999999984 1222 3445678999999998773 4556778777776653
No 40
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.73 E-value=2e-17 Score=196.40 Aligned_cols=201 Identities=21% Similarity=0.347 Sum_probs=142.4
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc-CCCeEEEecCCccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS-NAPFIKIEATKFTEVGYV 858 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l-~~~fi~l~~se~~~~Gyv 858 (1165)
+++|+|++.+++.|...+..+.+...+..... .++.++||+||||||||++|+++|+.+ +.+|+.++++++.+. |+
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~--~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~-~~ 209 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKR--TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK-WL 209 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGG--CCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC--------
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccC--CCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh-hc
Confidence 47899999999999999876655444433211 235899999999999999999999999 899999999998876 88
Q ss_pred ccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCC
Q psy2392 859 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 938 (1165)
Q Consensus 859 G~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~ 938 (1165)
|... ..++.+|..+.
T Consensus 210 g~~~-~~~~~~f~~a~---------------------------------------------------------------- 224 (444)
T 2zan_A 210 GESE-KLVKNLFQLAR---------------------------------------------------------------- 224 (444)
T ss_dssp --CC-CTHHHHHHHHH----------------------------------------------------------------
T ss_pred chHH-HHHHHHHHHHH----------------------------------------------------------------
Confidence 7763 34555554330
Q ss_pred eEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q psy2392 939 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 1018 (1165)
Q Consensus 939 r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 1018 (1165)
..++
T Consensus 225 ----------------------------------------------------------------------------~~~~ 228 (444)
T 2zan_A 225 ----------------------------------------------------------------------------ENKP 228 (444)
T ss_dssp ----------------------------------------------------------------------------HSCS
T ss_pred ----------------------------------------------------------------------------HcCC
Confidence 0156
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeE
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIR 1098 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~ 1098 (1165)
+||||||||.++...... ..+. ...++..||..++|.. ....+++||+++ +.|+.+.|.|++||+.+
T Consensus 229 ~vl~iDEid~l~~~~~~~-~~~~-~~~~~~~lL~~l~~~~-------~~~~~v~vI~at----n~~~~ld~al~rRf~~~ 295 (444)
T 2zan_A 229 SIIFIDEIDSLCGSRSEN-ESEA-ARRIKTEFLVQMQGVG-------VDNDGILVLGAT----NIPWVLDSAIRRRFEKR 295 (444)
T ss_dssp EEEEESCTTTTCCCSSCC-CCGG-GHHHHHHHHTTTTCSS-------CCCSSCEEEEEE----SCGGGSCHHHHTTCCEE
T ss_pred eEEEEechHhhccCCCCc-cccH-HHHHHHHHHHHHhCcc-------cCCCCEEEEecC----CCccccCHHHHhhcceE
Confidence 899999999998765432 1222 2347888999888732 134678899886 47888999999999999
Q ss_pred EEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1099 VELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+.++.++.++...|++ .++... .+.+++..+..||+.+.
T Consensus 296 i~i~~P~~~~r~~il~-----------~~l~~~--~~~l~~~~l~~la~~t~ 334 (444)
T 2zan_A 296 IYIPLPEAHARAAMFR-----------LHLGST--QNSLTEADFQELGRKTD 334 (444)
T ss_dssp EECCCCCHHHHHHHHH-----------HHHTTS--CEECCHHHHHHHHHHTT
T ss_pred EEeCCcCHHHHHHHHH-----------HHHhcC--CCCCCHHHHHHHHHHcC
Confidence 9999999999999988 223333 33567777777777653
No 41
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.73 E-value=1.9e-17 Score=191.05 Aligned_cols=202 Identities=18% Similarity=0.328 Sum_probs=143.1
Q ss_pred hhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccc
Q psy2392 779 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 858 (1165)
Q Consensus 779 L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~Gyv 858 (1165)
-+++|+|++.+++.|..++..+.+...+..... .++.++||+||||||||++|+++|+.++.+|+.++++++.+. |+
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~--~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~-~~ 125 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNR--KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK-WM 125 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSC--CCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC-C-
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCC--CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh-hc
Confidence 357899999999999999876655444433321 225789999999999999999999999999999999988776 77
Q ss_pred ccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCC
Q psy2392 859 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 938 (1165)
Q Consensus 859 G~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~ 938 (1165)
|.. +..++.+|..+.
T Consensus 126 g~~-~~~~~~~f~~a~---------------------------------------------------------------- 140 (355)
T 2qp9_X 126 GES-EKLVKQLFAMAR---------------------------------------------------------------- 140 (355)
T ss_dssp --C-HHHHHHHHHHHH----------------------------------------------------------------
T ss_pred chH-HHHHHHHHHHHH----------------------------------------------------------------
Confidence 765 334555543330
Q ss_pred eEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q psy2392 939 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 1018 (1165)
Q Consensus 939 r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 1018 (1165)
...+
T Consensus 141 ----------------------------------------------------------------------------~~~~ 144 (355)
T 2qp9_X 141 ----------------------------------------------------------------------------ENKP 144 (355)
T ss_dssp ----------------------------------------------------------------------------HTSS
T ss_pred ----------------------------------------------------------------------------HcCC
Confidence 0146
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeE
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIR 1098 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~ 1098 (1165)
+||||||||.+....... ..+ ....++..||..++|.. ....+++||++. +.|+.+.|.|++||..+
T Consensus 145 ~vl~iDEid~l~~~r~~~-~~~-~~~~~~~~ll~~l~~~~-------~~~~~v~vI~at----n~~~~ld~al~rRf~~~ 211 (355)
T 2qp9_X 145 SIIFIDQVDALTGTRGEG-ESE-ASRRIKTELLVQMNGVG-------NDSQGVLVLGAT----NIPWQLDSAIRRRFERR 211 (355)
T ss_dssp EEEEEECGGGGTC-------CT-HHHHHHHHHHHHHHHCC----------CCEEEEEEE----SCGGGSCHHHHHTCCEE
T ss_pred eEEEEechHhhcccCCCC-cch-HHHHHHHHHHHHhhccc-------ccCCCeEEEeec----CCcccCCHHHHcccCEE
Confidence 899999999998764321 112 22346788888888632 123568888886 46888999999999999
Q ss_pred EEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1099 VELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+.+..++.++..+||+ .++...+. .+++..++.||+.+.
T Consensus 212 i~i~~P~~~~r~~il~-----------~~l~~~~~--~~~~~~l~~la~~t~ 250 (355)
T 2qp9_X 212 IYIPLPDLAARTTMFE-----------INVGDTPS--VLTKEDYRTLGAMTE 250 (355)
T ss_dssp EECCCCCHHHHHHHHH-----------HHHTTSCB--CCCHHHHHHHHHHTT
T ss_pred EEeCCcCHHHHHHHHH-----------HHHhhCCC--CCCHHHHHHHHHHcC
Confidence 9999999999999998 23333332 456777777776653
No 42
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.72 E-value=1.2e-17 Score=199.79 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=86.3
Q ss_pred cCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHH
Q psy2392 626 RGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG-----NLMRASVELAKEW 700 (1165)
Q Consensus 626 RG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~-----~aL~aav~LS~ry 700 (1165)
+|.++||||||..+|+++++.|+++.|| |+ .|. +.+|+.+++..||+++...|+.||+ +++.+++.++.+|
T Consensus 289 ~g~v~vI~at~~~e~~~~~~~~~al~~R--f~-~i~-v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~ 364 (468)
T 3pxg_A 289 RGELQCIGATTLDEYRKYIEKDAALERR--FQ-PIQ-VDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRY 364 (468)
T ss_dssp SSSCEEEEECCTTTTHHHHTTCSHHHHS--EE-EEE-CCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHS
T ss_pred CCCEEEEecCCHHHHHHHhhcCHHHHHh--Cc-cce-eCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999 99 555 9999999999999999999999998 9999999999999
Q ss_pred hcccccchH--HHHhhhhhhhhhhhhcCCCC
Q psy2392 701 RNDRTLRRL--EAMLLTANRETTLIITGNGD 729 (1165)
Q Consensus 701 i~~R~lPDk--dlid~a~a~~~~~~~s~~~~ 729 (1165)
+.+|++||+ ++++.+++..+....+.+..
T Consensus 365 ~~~~~lp~~ai~ll~~a~~~~~~~~~~~p~~ 395 (468)
T 3pxg_A 365 ISDRFLPDKAIDLIDEAGSKVRLRSFTTPPN 395 (468)
T ss_dssp SCCSCTTHHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred hccCcCCcHHHHHHHHHHHHHHhccCCCchH
Confidence 999999996 55777777666543333333
No 43
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.71 E-value=7e-17 Score=186.42 Aligned_cols=201 Identities=25% Similarity=0.418 Sum_probs=142.9
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG 859 (1165)
+++|+|++.+++.|.+.+..++....+..... ..+.++||+||||||||++|+++|+.++.+|+.++++++.+. |+|
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~--~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~-~~g 159 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR--GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK-WVG 159 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG--SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS-STT
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhcc--CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc-ccc
Confidence 37899999999999999876544443332211 235899999999999999999999999999999999998776 766
Q ss_pred cChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCe
Q psy2392 860 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 939 (1165)
Q Consensus 860 ~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r 939 (1165)
.. ...++.+|..+
T Consensus 160 ~~-~~~~~~~~~~a------------------------------------------------------------------ 172 (357)
T 3d8b_A 160 EG-EKMVRALFAVA------------------------------------------------------------------ 172 (357)
T ss_dssp HH-HHHHHHHHHHH------------------------------------------------------------------
T ss_pred hH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 54 22333333222
Q ss_pred EEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC
Q psy2392 940 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 1019 (1165)
Q Consensus 940 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~g 1019 (1165)
+ ..+++
T Consensus 173 ---------------------------------------------------------------------~-----~~~~~ 178 (357)
T 3d8b_A 173 ---------------------------------------------------------------------R-----CQQPA 178 (357)
T ss_dssp ---------------------------------------------------------------------H-----HTCSE
T ss_pred ---------------------------------------------------------------------H-----hcCCe
Confidence 0 11468
Q ss_pred eeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeEE
Q psy2392 1020 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRV 1099 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v 1099 (1165)
||||||||.+...... +.......+|..||..++|.... ...+++||+++ +.|..+.|.|++||..++
T Consensus 179 vl~iDEid~l~~~~~~--~~~~~~~~~~~~lL~~l~~~~~~------~~~~v~vI~at----n~~~~l~~~l~~Rf~~~i 246 (357)
T 3d8b_A 179 VIFIDEIDSLLSQRGD--GEHESSRRIKTEFLVQLDGATTS------SEDRILVVGAT----NRPQEIDEAARRRLVKRL 246 (357)
T ss_dssp EEEEETHHHHTBC--------CHHHHHHHHHHHHHHC----------CCCCEEEEEEE----SCGGGBCHHHHTTCCEEE
T ss_pred EEEEeCchhhhccCCC--CcchHHHHHHHHHHHHHhccccc------CCCCEEEEEec----CChhhCCHHHHhhCceEE
Confidence 9999999999876432 11223345788899999874321 23578888886 467789999999999999
Q ss_pred EcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1100 ELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1100 ~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
.+..++.++..+|+. .++..+++ .+++++++.|++.+
T Consensus 247 ~i~~p~~~~r~~il~-----------~~~~~~~~--~l~~~~l~~la~~t 283 (357)
T 3d8b_A 247 YIPLPEASARKQIVI-----------NLMSKEQC--CLSEEEIEQIVQQS 283 (357)
T ss_dssp ECCCCCHHHHHHHHH-----------HHHHTSCB--CCCHHHHHHHHHHT
T ss_pred EeCCcCHHHHHHHHH-----------HHHhhcCC--CccHHHHHHHHHHc
Confidence 999999999999987 23333343 46677777776654
No 44
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.71 E-value=2.9e-17 Score=184.35 Aligned_cols=206 Identities=17% Similarity=0.275 Sum_probs=146.4
Q ss_pred hhHHHHHHHHhhhcccchHHHHHHHHHHHHhHh-----hhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcC--
Q psy2392 769 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRW-----RRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN-- 841 (1165)
Q Consensus 769 ~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~-----~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~-- 841 (1165)
.....++...|+++|+|++.+++.+...+...+ .+.|+... ..+.++||+||||||||++|+++|+.++
T Consensus 19 ~~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~----~~~~~vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 19 GSGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHE----TPTLHMSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp HTTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS----CCCCEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC----CCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 445677888898899999999999998776432 23343332 2247899999999999999999999983
Q ss_pred -----CCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCC
Q psy2392 842 -----APFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNN 916 (1165)
Q Consensus 842 -----~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~ 916 (1165)
.+++.++++++... |.|.... .+..+|
T Consensus 95 ~~~~~~~~~~~~~~~l~~~-~~g~~~~-~~~~~~---------------------------------------------- 126 (309)
T 3syl_A 95 GYVRKGHLVSVTRDDLVGQ-YIGHTAP-KTKEVL---------------------------------------------- 126 (309)
T ss_dssp TSSSSCCEEEECGGGTCCS-STTCHHH-HHHHHH----------------------------------------------
T ss_pred CCcCCCcEEEEcHHHhhhh-cccccHH-HHHHHH----------------------------------------------
Confidence 38899998887655 6654421 122211
Q ss_pred cccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHH
Q psy2392 917 ENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDE 996 (1165)
Q Consensus 917 ~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~ 996 (1165)
T Consensus 127 -------------------------------------------------------------------------------- 126 (309)
T 3syl_A 127 -------------------------------------------------------------------------------- 126 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEec
Q psy2392 997 EANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIAS 1076 (1165)
Q Consensus 997 ~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~ 1076 (1165)
+.+ ..+|+||||||.+.....+ +.....+|..|+.++|.. ..++.||++
T Consensus 127 ------------~~~-----~~~vl~iDEid~l~~~~~~----~~~~~~~~~~Ll~~l~~~----------~~~~~~i~~ 175 (309)
T 3syl_A 127 ------------KRA-----MGGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENN----------RDDLVVILA 175 (309)
T ss_dssp ------------HHH-----TTSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHHC----------TTTCEEEEE
T ss_pred ------------Hhc-----CCCEEEEEChhhhccCCCc----ccccHHHHHHHHHHHhcC----------CCCEEEEEe
Confidence 111 4689999999999865322 122345889999999853 356678888
Q ss_pred CCCCC-CCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1077 GAFHL-AKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1077 gaf~~-~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
|.... .....+.|.|.+||+..++|++++.+++.+|++ ..+...++ .+++++++.|+..+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~-----------~~l~~~~~--~~~~~~~~~l~~~~~ 237 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAG-----------HMLDDQNY--QMTPEAETALRAYIG 237 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHH-----------HHHHHTTC--EECHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHHH
Confidence 65221 000123599999999999999999999999998 33344454 789999999998765
No 45
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.71 E-value=5.3e-17 Score=189.37 Aligned_cols=202 Identities=24% Similarity=0.382 Sum_probs=138.9
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|+|++.+++.+...+........+..... ..+.++||+||||||||++|+++|+.++.+|+.++++++... |+|.
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~-~~g~ 191 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLR--APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSK-YVGE 191 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG--CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--------
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccC--CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcc-ccch
Confidence 6899999999999999876544333332222 125799999999999999999999999999999999998876 7776
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
.. ..++.+|..+.
T Consensus 192 ~~-~~~~~~~~~a~------------------------------------------------------------------ 204 (389)
T 3vfd_A 192 GE-KLVRALFAVAR------------------------------------------------------------------ 204 (389)
T ss_dssp CH-HHHHHHHHHHH------------------------------------------------------------------
T ss_pred HH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 63 33444443330
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
..+++|
T Consensus 205 --------------------------------------------------------------------------~~~~~i 210 (389)
T 3vfd_A 205 --------------------------------------------------------------------------ELQPSI 210 (389)
T ss_dssp --------------------------------------------------------------------------HSSSEE
T ss_pred --------------------------------------------------------------------------hcCCeE
Confidence 014689
Q ss_pred eeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeEEE
Q psy2392 1021 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVE 1100 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v~ 1100 (1165)
|||||||.+...... +.......+|..||..++|... ....+++||++.. .|+.+.|.|++||...+.
T Consensus 211 l~iDEid~l~~~~~~--~~~~~~~~~~~~ll~~l~~~~~------~~~~~v~vI~atn----~~~~l~~~l~~R~~~~i~ 278 (389)
T 3vfd_A 211 IFIDQVDSLLCERRE--GEHDASRRLKTEFLIEFDGVQS------AGDDRVLVMGATN----RPQELDEAVLRRFIKRVY 278 (389)
T ss_dssp EEEETGGGGC----------CTHHHHHHHHHHHHHHHC-----------CEEEEEEES----CGGGCCHHHHTTCCEEEE
T ss_pred EEEECchhhcccCCC--ccchHHHHHHHHHHHHhhcccc------cCCCCEEEEEecC----CchhcCHHHHcCcceEEE
Confidence 999999999776432 1112234588889999886322 1235788888864 678899999999998899
Q ss_pred cCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1101 LDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1101 l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
|..++.++..+|+. .++..+++ .++++++..|++.+..
T Consensus 279 i~~p~~~~r~~il~-----------~~~~~~~~--~l~~~~~~~la~~~~g 316 (389)
T 3vfd_A 279 VSLPNEETRLLLLK-----------NLLCKQGS--PLTQKELAQLARMTDG 316 (389)
T ss_dssp CCCCCHHHHHHHHH-----------HHHTTSCC--CSCHHHHHHHHHHTTT
T ss_pred cCCcCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHHcCC
Confidence 99999999999988 34444454 5677777777776543
No 46
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.70 E-value=1.4e-16 Score=183.86 Aligned_cols=216 Identities=23% Similarity=0.384 Sum_probs=153.1
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|++.+++.+.+.+..++++..+..... ..+.++||+||||||||++|+++|+.++.+|+.++++++.+. |.|.
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~--~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~-~~g~ 160 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLR--GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK-WVGE 160 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG--SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS-STTH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhcc--CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc-ccch
Confidence 4799999999999999887655554433222 235799999999999999999999999999999999988663 6654
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. ...++.++..+
T Consensus 161 ~-~~~~~~~~~~a------------------------------------------------------------------- 172 (357)
T 3d8b_A 161 G-EKMVRALFAVA------------------------------------------------------------------- 172 (357)
T ss_dssp H-HHHHHHHHHHH-------------------------------------------------------------------
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 3 22233332220
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
. ...++|
T Consensus 173 -----------------------------------------------------------------------~--~~~~~v 179 (357)
T 3d8b_A 173 -----------------------------------------------------------------------R--CQQPAV 179 (357)
T ss_dssp -----------------------------------------------------------------------H--HTCSEE
T ss_pred -----------------------------------------------------------------------H--hcCCeE
Confidence 0 014789
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEe
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVE 502 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~ 502 (1165)
|||||||.+...+.. +.......++..||..++|.... ...+++||+++ +.|..+.|+|++||+..+.
T Consensus 180 l~iDEid~l~~~~~~--~~~~~~~~~~~~lL~~l~~~~~~------~~~~v~vI~at----n~~~~l~~~l~~Rf~~~i~ 247 (357)
T 3d8b_A 180 IFIDEIDSLLSQRGD--GEHESSRRIKTEFLVQLDGATTS------SEDRILVVGAT----NRPQEIDEAARRRLVKRLY 247 (357)
T ss_dssp EEEETHHHHTBC--------CHHHHHHHHHHHHHHC----------CCCCEEEEEEE----SCGGGBCHHHHTTCCEEEE
T ss_pred EEEeCchhhhccCCC--CcchHHHHHHHHHHHHHhccccc------CCCCEEEEEec----CChhhCCHHHHhhCceEEE
Confidence 999999999876543 12223445788899988874321 23578888885 5677899999999999999
Q ss_pred cCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 503 LDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 503 ~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
+..++.++..+|+. .++...+ +.+++++++.|++.+. ++-.+.|+.++....
T Consensus 248 i~~p~~~~r~~il~-----------~~~~~~~--~~l~~~~l~~la~~t~-------G~s~~dl~~l~~~a~ 299 (357)
T 3d8b_A 248 IPLPEASARKQIVI-----------NLMSKEQ--CCLSEEEIEQIVQQSD-------AFSGADMTQLCREAS 299 (357)
T ss_dssp CCCCCHHHHHHHHH-----------HHHHTSC--BCCCHHHHHHHHHHTT-------TCCHHHHHHHHHHHH
T ss_pred eCCcCHHHHHHHHH-----------HHHhhcC--CCccHHHHHHHHHHcC-------CCCHHHHHHHHHHHH
Confidence 99999999999883 2233333 4578999999998773 344566777766654
No 47
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.70 E-value=1.5e-16 Score=177.82 Aligned_cols=201 Identities=27% Similarity=0.431 Sum_probs=141.2
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|+|++.+++.+...+..+.....+..+.. .++.++||+||||||||++|+++|+.++.+|+.++++++... |+|.
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~--~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~-~~~~ 97 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLR--APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK-YVGD 97 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG--CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS-SCSC
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCC--CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc-ccch
Confidence 6899999999999998876544333332222 125799999999999999999999999999999999998765 7665
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
. +..++.+|..+
T Consensus 98 ~-~~~~~~~~~~~------------------------------------------------------------------- 109 (297)
T 3b9p_A 98 G-EKLVRALFAVA------------------------------------------------------------------- 109 (297)
T ss_dssp H-HHHHHHHHHHH-------------------------------------------------------------------
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 4 23344433222
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
...+++|
T Consensus 110 -------------------------------------------------------------------------~~~~~~v 116 (297)
T 3b9p_A 110 -------------------------------------------------------------------------RHMQPSI 116 (297)
T ss_dssp -------------------------------------------------------------------------HHTCSEE
T ss_pred -------------------------------------------------------------------------HHcCCcE
Confidence 0115689
Q ss_pred eeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeEEE
Q psy2392 1021 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVE 1100 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v~ 1100 (1165)
|||||||.+....... ..+. ...+|..||..+++.... ...+++++|+++ +.|+++.|.+++||..++.
T Consensus 117 l~iDEid~l~~~~~~~-~~~~-~~~~~~~ll~~l~~~~~~-----~~~~~v~vi~~t----n~~~~l~~~l~~R~~~~i~ 185 (297)
T 3b9p_A 117 IFIDEVDSLLSERSSS-EHEA-SRRLKTEFLVEFDGLPGN-----PDGDRIVVLAAT----NRPQELDEAALRRFTKRVY 185 (297)
T ss_dssp EEEETGGGTSBCC------CC-SHHHHHHHHHHHHHCC-----------CEEEEEEE----SCGGGBCHHHHHHCCEEEE
T ss_pred EEeccHHHhccccccC-cchH-HHHHHHHHHHHHhccccc-----CCCCcEEEEeec----CChhhCCHHHHhhCCeEEE
Confidence 9999999998775431 1222 234677788888763321 123568888885 4778899999999999999
Q ss_pred cCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1101 LDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1101 l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
++.++.++...|+. .++...+. .+++++++.|++.+
T Consensus 186 ~~~p~~~~r~~il~-----------~~~~~~~~--~~~~~~~~~la~~~ 221 (297)
T 3b9p_A 186 VSLPDEQTRELLLN-----------RLLQKQGS--PLDTEALRRLAKIT 221 (297)
T ss_dssp CCCCCHHHHHHHHH-----------HHHGGGSC--CSCHHHHHHHHHHT
T ss_pred eCCcCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHHc
Confidence 99999999988887 23333343 46677777777654
No 48
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.70 E-value=1.6e-16 Score=185.27 Aligned_cols=215 Identities=23% Similarity=0.368 Sum_probs=145.2
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|++.+++.|...+.....+..+...... .+.++||+||||||||++|+++|..++.+|+.++++++... |+|.
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~-~~g~ 191 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRA--PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSK-YVGE 191 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGC--CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--------
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCC--CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcc-ccch
Confidence 47999999999999988766444444333322 24799999999999999999999999999999999998763 6665
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. ...++.+|..+
T Consensus 192 ~-~~~~~~~~~~a------------------------------------------------------------------- 203 (389)
T 3vfd_A 192 G-EKLVRALFAVA------------------------------------------------------------------- 203 (389)
T ss_dssp C-HHHHHHHHHHH-------------------------------------------------------------------
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 5 23333333331
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
. ...++|
T Consensus 204 -----------------------------------------------------------------------~--~~~~~i 210 (389)
T 3vfd_A 204 -----------------------------------------------------------------------R--ELQPSI 210 (389)
T ss_dssp -----------------------------------------------------------------------H--HSSSEE
T ss_pred -----------------------------------------------------------------------H--hcCCeE
Confidence 0 014689
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEe
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVE 502 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~ 502 (1165)
|||||||.+...... +.......+|..||..++|... ....+++||+++ +.|..+.|.|++||...+.
T Consensus 211 l~iDEid~l~~~~~~--~~~~~~~~~~~~ll~~l~~~~~------~~~~~v~vI~at----n~~~~l~~~l~~R~~~~i~ 278 (389)
T 3vfd_A 211 IFIDQVDSLLCERRE--GEHDASRRLKTEFLIEFDGVQS------AGDDRVLVMGAT----NRPQELDEAVLRRFIKRVY 278 (389)
T ss_dssp EEEETGGGGC----------CTHHHHHHHHHHHHHHHC-----------CEEEEEEE----SCGGGCCHHHHTTCCEEEE
T ss_pred EEEECchhhcccCCC--ccchHHHHHHHHHHHHhhcccc------cCCCCEEEEEec----CCchhcCHHHHcCcceEEE
Confidence 999999999776443 1122234578889988886321 123568888885 4677899999999998899
Q ss_pred cCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 503 LDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 503 ~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
|..++.+++.+|+. .++...+ ..+++++++.|++.+.. +-.+.|..++...
T Consensus 279 i~~p~~~~r~~il~-----------~~~~~~~--~~l~~~~~~~la~~~~g-------~~~~~l~~L~~~a 329 (389)
T 3vfd_A 279 VSLPNEETRLLLLK-----------NLLCKQG--SPLTQKELAQLARMTDG-------YSGSDLTALAKDA 329 (389)
T ss_dssp CCCCCHHHHHHHHH-----------HHHTTSC--CCSCHHHHHHHHHHTTT-------CCHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHH-----------HHHHhcC--CCCCHHHHHHHHHHcCC-------CCHHHHHHHHHHH
Confidence 99999999999983 2233344 46789999999887743 3344555555443
No 49
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.69 E-value=2.4e-16 Score=176.22 Aligned_cols=216 Identities=26% Similarity=0.396 Sum_probs=149.2
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|++.+++.+.+.+..+..+..+..+... ++.++||+||||||||++|+++|+.++.+|+.++++++... |+|.
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~--~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~-~~~~ 97 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRA--PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK-YVGD 97 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGC--CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS-SCSC
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCC--CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc-ccch
Confidence 47999999999999988766544444433222 25799999999999999999999999999999999987653 6654
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. +..++.++..+
T Consensus 98 ~-~~~~~~~~~~~------------------------------------------------------------------- 109 (297)
T 3b9p_A 98 G-EKLVRALFAVA------------------------------------------------------------------- 109 (297)
T ss_dssp H-HHHHHHHHHHH-------------------------------------------------------------------
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 3 22233333220
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
. ...++|
T Consensus 110 -----------------------------------------------------------------------~--~~~~~v 116 (297)
T 3b9p_A 110 -----------------------------------------------------------------------R--HMQPSI 116 (297)
T ss_dssp -----------------------------------------------------------------------H--HTCSEE
T ss_pred -----------------------------------------------------------------------H--HcCCcE
Confidence 0 015789
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEe
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVE 502 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~ 502 (1165)
|||||||.+....... ..+. ...++..||..+++.... ....++++|+++ +.|..+.|++++||+..+.
T Consensus 117 l~iDEid~l~~~~~~~-~~~~-~~~~~~~ll~~l~~~~~~-----~~~~~v~vi~~t----n~~~~l~~~l~~R~~~~i~ 185 (297)
T 3b9p_A 117 IFIDEVDSLLSERSSS-EHEA-SRRLKTEFLVEFDGLPGN-----PDGDRIVVLAAT----NRPQELDEAALRRFTKRVY 185 (297)
T ss_dssp EEEETGGGTSBCC------CC-SHHHHHHHHHHHHHCC-----------CEEEEEEE----SCGGGBCHHHHHHCCEEEE
T ss_pred EEeccHHHhccccccC-cchH-HHHHHHHHHHHHhccccc-----CCCCcEEEEeec----CChhhCCHHHHhhCCeEEE
Confidence 9999999998775431 1122 234667788888763221 123567888874 5677899999999999999
Q ss_pred cCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 503 LDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 503 ~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
+..++.++...|+. .++...+ ..+++++++.|++.+. ++-.+.|..+++..
T Consensus 186 ~~~p~~~~r~~il~-----------~~~~~~~--~~~~~~~~~~la~~~~-------g~~~~~l~~l~~~a 236 (297)
T 3b9p_A 186 VSLPDEQTRELLLN-----------RLLQKQG--SPLDTEALRRLAKITD-------GYSGSDLTALAKDA 236 (297)
T ss_dssp CCCCCHHHHHHHHH-----------HHHGGGS--CCSCHHHHHHHHHHTT-------TCCHHHHHHHHHHH
T ss_pred eCCcCHHHHHHHHH-----------HHHHhcC--CCCCHHHHHHHHHHcC-------CCCHHHHHHHHHHH
Confidence 99999999988883 2233333 3578999999988763 33345666666554
No 50
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.69 E-value=5.6e-17 Score=182.80 Aligned_cols=218 Identities=18% Similarity=0.295 Sum_probs=147.5
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|++.+++.+.+++..+.+++.+...... ..+.++||+||||||||++|+++|+.++.+|+.++++++.+. |.|.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~-~~g~ 92 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM-WFGE 92 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH-HHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC-CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh-hcCc
Confidence 47999999999999998765444432221110 124799999999999999999999999999999998877543 5555
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. +..++.+|..+
T Consensus 93 ~-~~~~~~~f~~a------------------------------------------------------------------- 104 (301)
T 3cf0_A 93 S-EANVREIFDKA------------------------------------------------------------------- 104 (301)
T ss_dssp C-TTHHHHHHHHH-------------------------------------------------------------------
T ss_pred h-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 4 22233333331
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
.. ..++|
T Consensus 105 -----------------------------------------------------------------------~~--~~p~i 111 (301)
T 3cf0_A 105 -----------------------------------------------------------------------RQ--AAPCV 111 (301)
T ss_dssp -----------------------------------------------------------------------HH--TCSEE
T ss_pred -----------------------------------------------------------------------Hh--cCCeE
Confidence 00 14789
Q ss_pred EEEecchhhhccCCCCCC-CccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--CCCe
Q psy2392 423 IFLDEIDKITTRSSQNNN-TDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPI 499 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~-~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~--R~~~ 499 (1165)
|||||||.+...++...+ .......++..||..++|.. ...++++|+++ +.|..+.|++++ ||+.
T Consensus 112 l~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~--------~~~~v~vi~at----n~~~~ld~al~r~gRf~~ 179 (301)
T 3cf0_A 112 LFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS--------TKKNVFIIGAT----NRPDIIDPAILRPGRLDQ 179 (301)
T ss_dssp EEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC--------TTSSEEEEEEE----SCGGGSCGGGGSTTSSCE
T ss_pred EEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc--------CCCCEEEEEec----CCccccChHHhcCCccce
Confidence 999999999987543211 11122347778999998632 24578888884 567789999886 9999
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
.+.|..++.++..+|++ ..+...++.-.+ .++.|+..++ ++-.+-|++++++.+..
T Consensus 180 ~i~i~~p~~~~r~~il~-----------~~l~~~~~~~~~---~~~~la~~~~-------g~sg~dl~~l~~~a~~~ 235 (301)
T 3cf0_A 180 LIYIPLPDEKSRVAILK-----------ANLRKSPVAKDV---DLEFLAKMTN-------GFSGADLTEICQRACKL 235 (301)
T ss_dssp EEECCCCCHHHHHHHHH-----------HHHTTSCBCSSC---CHHHHHHTCS-------SCCHHHHHHHHHHHHHH
T ss_pred EEecCCcCHHHHHHHHH-----------HHHccCCCCccc---hHHHHHHHcC-------CCCHHHHHHHHHHHHHH
Confidence 99999999999999884 223333332122 2455665443 23334788888776543
No 51
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.68 E-value=5.5e-17 Score=197.27 Aligned_cols=245 Identities=18% Similarity=0.237 Sum_probs=152.0
Q ss_pred HHhhhccCCChHHHHHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhH
Q psy2392 752 KALQENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTE 831 (1165)
Q Consensus 752 ~~l~~~t~~~~~~i~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~ 831 (1165)
..+...+.+++.....+...+.+..+.|+++++|++++++.+...+... .....- +..+++|+||||||||+
T Consensus 52 ~~l~~~~~lp~~~~~~~~~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~--~~~~~~------~g~~vll~Gp~GtGKTt 123 (543)
T 3m6a_A 52 NYIDWLVALPWTDETDDKLDLKEAGRLLDEEHHGLEKVKERILEYLAVQ--KLTKSL------KGPILCLAGPPGVGKTS 123 (543)
T ss_dssp HHHHHHHHSCSSCCCCCCCCTTTGGGTHHHHCSSCHHHHHHHHHHHHHH--HHSSSC------CSCEEEEESSSSSSHHH
T ss_pred HHHHHHhcCCCCccccccccHHHHHHHHHHHhccHHHHHHHHHHHHHHH--HhcccC------CCCEEEEECCCCCCHHH
Confidence 3333334444444333445556667778899999999999998776643 221111 24789999999999999
Q ss_pred HHHHHHHHcCCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCc
Q psy2392 832 IARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLD 911 (1165)
Q Consensus 832 lAk~lA~~l~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~ 911 (1165)
+|+++|+.++.+|..++++.+... .++++.... .+..
T Consensus 124 lar~ia~~l~~~~~~i~~~~~~~~-----------~~~~g~~~~---------------------~ig~----------- 160 (543)
T 3m6a_A 124 LAKSIAKSLGRKFVRISLGGVRDE-----------SEIRGHRRT---------------------YVGA----------- 160 (543)
T ss_dssp HHHHHHHHHTCEEEEECCCC------------------------------------------------------------
T ss_pred HHHHHHHhcCCCeEEEEecccchh-----------hhhhhHHHH---------------------Hhcc-----------
Confidence 999999999999999988764321 111100000 0000
Q ss_pred cccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHH
Q psy2392 912 TDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIK 991 (1165)
Q Consensus 912 ~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~ 991 (1165)
+...+
T Consensus 161 ---------------------------------------------------~~~~~------------------------ 165 (543)
T 3m6a_A 161 ---------------------------------------------------MPGRI------------------------ 165 (543)
T ss_dssp ------------------------------------------------------CH------------------------
T ss_pred ---------------------------------------------------CchHH------------------------
Confidence 00000
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhh-hcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccce---eeee--e
Q psy2392 992 LLIDEEANKLLNEDEIQQKAINNV-EQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN---TKYG--I 1065 (1165)
Q Consensus 992 ~l~~~~~~~~~~~~~~~~~a~~~~-~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~---~k~~--~ 1065 (1165)
..+...+ ..++|+||||||++.....+ .+|..||.++|+.... ..+. .
T Consensus 166 -----------------~~~~~~a~~~~~vl~lDEid~l~~~~~~---------~~~~~LL~~ld~~~~~~~~~~~~~~~ 219 (543)
T 3m6a_A 166 -----------------IQGMKKAGKLNPVFLLDEIDKMSSDFRG---------DPSSAMLEVLDPEQNSSFSDHYIEET 219 (543)
T ss_dssp -----------------HHHHHTTCSSSEEEEEEESSSCC------------------CCGGGTCTTTTTBCCCSSSCCC
T ss_pred -----------------HHHHHHhhccCCEEEEhhhhhhhhhhcc---------CHHHHHHHHHhhhhcceeecccCCee
Confidence 0011111 14569999999999876322 2788999999875432 2222 3
Q ss_pred ccCceEEEEecCCCCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHH
Q psy2392 1066 IKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRL 1145 (1165)
Q Consensus 1066 ~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~i 1145 (1165)
++..+++||++.+ .++.+.|+|++||.+ ++|++++.++..+|++ ..++.++.+........+.|+++++..|
T Consensus 220 ~~~~~v~iI~ttN----~~~~l~~aL~~R~~v-i~~~~~~~~e~~~Il~---~~l~~~~~~~~~~~~~~i~i~~~~l~~l 291 (543)
T 3m6a_A 220 FDLSKVLFIATAN----NLATIPGPLRDRMEI-INIAGYTEIEKLEIVK---DHLLPKQIKEHGLKKSNLQLRDQAILDI 291 (543)
T ss_dssp CBCSSCEEEEECS----STTTSCHHHHHHEEE-EECCCCCHHHHHHHHH---HTHHHHHHHHTTCCGGGCEECHHHHHHH
T ss_pred ecccceEEEeccC----ccccCCHHHHhhcce-eeeCCCCHHHHHHHHH---HHHHHHHHHHcCCCcccccCCHHHHHHH
Confidence 4557899998864 577899999999975 7999999999999998 4454444333322223779999999999
Q ss_pred HHHHhccCcCCc
Q psy2392 1146 AEIAYCINERTE 1157 (1165)
Q Consensus 1146 a~~a~~~~~~~~ 1157 (1165)
+. .|....+.+
T Consensus 292 ~~-~~~~~~~vR 302 (543)
T 3m6a_A 292 IR-YYTREAGVR 302 (543)
T ss_dssp HH-HHCCCSSSH
T ss_pred HH-hCChhhchh
Confidence 87 555443333
No 52
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.67 E-value=1.6e-16 Score=179.15 Aligned_cols=180 Identities=19% Similarity=0.301 Sum_probs=130.6
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG 859 (1165)
+++|+|++.+++.+.+.+..+++...+..... ..++.++||+||||||||++|+++|+.++.+|+.++++++.+. |+|
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~-~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~-~~g 91 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM-WFG 91 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC-CCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH-HHT
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcC-CCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh-hcC
Confidence 47899999999999999876433221111000 0125789999999999999999999999999999999887665 666
Q ss_pred cChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCe
Q psy2392 860 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 939 (1165)
Q Consensus 860 ~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r 939 (1165)
... ..++.+|..+.
T Consensus 92 ~~~-~~~~~~f~~a~----------------------------------------------------------------- 105 (301)
T 3cf0_A 92 ESE-ANVREIFDKAR----------------------------------------------------------------- 105 (301)
T ss_dssp TCT-THHHHHHHHHH-----------------------------------------------------------------
T ss_pred chH-HHHHHHHHHHH-----------------------------------------------------------------
Confidence 653 33454443330
Q ss_pred EEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC
Q psy2392 940 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 1019 (1165)
Q Consensus 940 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~g 1019 (1165)
...++
T Consensus 106 ---------------------------------------------------------------------------~~~p~ 110 (301)
T 3cf0_A 106 ---------------------------------------------------------------------------QAAPC 110 (301)
T ss_dssp ---------------------------------------------------------------------------HTCSE
T ss_pred ---------------------------------------------------------------------------hcCCe
Confidence 01468
Q ss_pred eeeehhhhhhhccCCCCCC-CCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--cCC
Q psy2392 1020 IIFLDEIDKITTRSSQNNN-TDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFP 1096 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~~-~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~ 1096 (1165)
|+||||||.++...++..+ .......++..||..++|.. ...++++|++. +.|+.+.|.+++ ||.
T Consensus 111 il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~--------~~~~v~vi~at----n~~~~ld~al~r~gRf~ 178 (301)
T 3cf0_A 111 VLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS--------TKKNVFIIGAT----NRPDIIDPAILRPGRLD 178 (301)
T ss_dssp EEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC--------TTSSEEEEEEE----SCGGGSCGGGGSTTSSC
T ss_pred EEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc--------CCCCEEEEEec----CCccccChHHhcCCccc
Confidence 9999999999977433211 11122347888999998632 23578888886 477788899886 999
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
..+.|+.++.++..+|++
T Consensus 179 ~~i~i~~p~~~~r~~il~ 196 (301)
T 3cf0_A 179 QLIYIPLPDEKSRVAILK 196 (301)
T ss_dssp EEEECCCCCHHHHHHHHH
T ss_pred eEEecCCcCHHHHHHHHH
Confidence 999999999999999987
No 53
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.67 E-value=6.5e-16 Score=183.50 Aligned_cols=140 Identities=24% Similarity=0.370 Sum_probs=96.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCC-CCCchhhhCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKP-SDLIPELQGRF 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p-~~l~pel~~R~ 497 (1165)
.++||||||||.+.+. .|..||+.+|.+. +.||+++. .+| ..+.+.|++|+
T Consensus 106 ~~~iLfIDEI~~l~~~-------------~q~~LL~~le~~~------------v~lI~att---~n~~~~l~~aL~sR~ 157 (447)
T 3pvs_A 106 RRTILFVDEVHRFNKS-------------QQDAFLPHIEDGT------------ITFIGATT---ENPSFELNSALLSRA 157 (447)
T ss_dssp CCEEEEEETTTCC-------------------CCHHHHHTTS------------CEEEEEES---SCGGGSSCHHHHTTE
T ss_pred CCcEEEEeChhhhCHH-------------HHHHHHHHHhcCc------------eEEEecCC---CCcccccCHHHhCce
Confidence 4789999999999866 4458999998632 45666642 344 36899999999
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
.+ +.|++|+.+++.+++. ..+.+....+ .+..+.+++++++.|++.+ ++++|.+.+++++++.-.
T Consensus 158 ~v-~~l~~l~~edi~~il~----~~l~~~~~~~--~~~~~~i~~~al~~L~~~~--------~Gd~R~lln~Le~a~~~a 222 (447)
T 3pvs_A 158 RV-YLLKSLSTEDIEQVLT----QAMEDKTRGY--GGQDIVLPDETRRAIAELV--------NGDARRALNTLEMMADMA 222 (447)
T ss_dssp EE-EECCCCCHHHHHHHHH----HHHHCTTTSS--TTSSEECCHHHHHHHHHHH--------CSCHHHHHHHHHHHHHHS
T ss_pred eE-EeeCCcCHHHHHHHHH----HHHHHHhhhh--ccccCcCCHHHHHHHHHHC--------CCCHHHHHHHHHHHHHhc
Confidence 85 5799999999999984 1111110000 1155789999999999986 678999999999987543
Q ss_pred hcccCCCeeEEcccccccccccCcc
Q psy2392 578 SFNSNNISLLVDADYVNSRLGDLSI 602 (1165)
Q Consensus 578 ~~~~~~~~~~i~~~~v~~~~~~~~~ 602 (1165)
... ......||.+.|++.++....
T Consensus 223 ~~~-~~~~~~It~e~v~~~l~~~~~ 246 (447)
T 3pvs_A 223 EVD-DSGKRVLKPELLTEIAGERSA 246 (447)
T ss_dssp CBC-TTSCEECCHHHHHHHHTCCCC
T ss_pred ccc-cCCCCccCHHHHHHHHhhhhh
Confidence 111 112257999999888776543
No 54
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.65 E-value=1.3e-17 Score=211.42 Aligned_cols=313 Identities=16% Similarity=0.222 Sum_probs=188.4
Q ss_pred ecCCeEEEEccCHHHHHHhhhccchhhh--hhccccceEEecCCCHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC
Q psy2392 27 RRGNKVSLGGDGQVTFGNVIMKNSAKKV--RKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQGNLMRASVELAKEWRN 104 (1165)
Q Consensus 27 ARGel~~IgATT~~Eyr~~IekD~Al~R--R~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~~h~~al~~~v~ls~rYi~ 104 (1165)
.++.+.+|+||+..+ .-|+++.| | |. ..+.+..|+.++...||+.+..++..++...+...+..+..|..
T Consensus 337 ~~~~v~vI~atn~~~-----~ld~al~r~gR--f~-~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g 408 (806)
T 1ypw_A 337 QRAHVIVMAATNRPN-----SIDPALRRFGR--FD-REVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVG 408 (806)
T ss_dssp TTSCCEEEEECSCTT-----TSCTTTTSTTS--SC-EEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCH
T ss_pred ccccEEEecccCCch-----hcCHHHhcccc--cc-cccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcch
Confidence 467899999998764 34899999 8 98 67779999999999999987666544333223333332222221
Q ss_pred CCCchhH-HHHHhhhhhhhhhhccCCCCccCcccc-cc--cccccchhhHHHHHHhhhccccCchhhhhhhhHHHHHHHH
Q psy2392 105 DRTLRRL-EAMLLTANRETTLIITGNGDVLEPENG-IG--AIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSE 180 (1165)
Q Consensus 105 ~r~lPDk-alld~a~a~~~~~~~~~~~~~~~~e~~-~~--~~~~~~~~~~~va~~l~~~t~l~~~~i~~~~~~~~~l~~~ 180 (1165)
-|. ++..+++....... ......+.. +. ...............+.........+. ..+....
T Consensus 409 ----~dl~~l~~ea~~~a~r~~----~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~------~~~~~~v 474 (806)
T 1ypw_A 409 ----ADLAALCSEAALQAIRKK----MDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRET------VVEVPQV 474 (806)
T ss_dssp ----HHHHHHHHHHHHHHHHHT----TTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCC------CCCCCCC
T ss_pred ----HHHHHHHHHHHHHHHhhh----ccccchhhhccchhhhhhhhhhhhhhhccccccCchhhhhh------cccCccc
Confidence 122 22222221111100 000011000 00 000000000000111111100000000 0001112
Q ss_pred hcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccc
Q psy2392 181 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 260 (1165)
Q Consensus 181 L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~Gyv 260 (1165)
..++++|++++++.+.+.+..+.++........ ..++.++||+||||||||++|+++|..++.+|+.++++++.+. |+
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~-~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~-~~ 552 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM-WF 552 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCC-CCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC-CT
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcC-CCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh-hc
Confidence 246899999999999988865433333222221 1134789999999999999999999999999999999998775 88
Q ss_pred ccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCC
Q psy2392 261 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 340 (1165)
Q Consensus 261 G~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 340 (1165)
|.. +..++.+|+.+
T Consensus 553 g~~-~~~i~~~f~~a----------------------------------------------------------------- 566 (806)
T 1ypw_A 553 GES-EANVREIFDKA----------------------------------------------------------------- 566 (806)
T ss_dssp TTS-SHHHHHHHHHH-----------------------------------------------------------------
T ss_pred Ccc-HHHHHHHHHHH-----------------------------------------------------------------
Confidence 877 34455555441
Q ss_pred cEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccc
Q psy2392 341 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 420 (1165)
Q Consensus 341 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 420 (1165)
.. ..+
T Consensus 567 -------------------------------------------------------------------------~~--~~p 571 (806)
T 1ypw_A 567 -------------------------------------------------------------------------RQ--AAP 571 (806)
T ss_dssp -------------------------------------------------------------------------HH--HCS
T ss_pred -------------------------------------------------------------------------Hh--cCC
Confidence 00 146
Q ss_pred eEEEEecchhhhccCCCCCC-CccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--CC
Q psy2392 421 GIIFLDEIDKITTRSSQNNN-TDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RF 497 (1165)
Q Consensus 421 ~IifiDEidki~~~~~~~~~-~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~--R~ 497 (1165)
+|+||||||+++..+.+..+ .......+++.||..++|.. ...+++||+++ +.|+.+.|+|++ ||
T Consensus 572 ~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~--------~~~~v~vI~tT----N~~~~ld~allrpgRf 639 (806)
T 1ypw_A 572 CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS--------TKKNVFIIGAT----NRPDIIDPAILRPGRL 639 (806)
T ss_dssp BCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--------------CCBCCCCC----BSCGGGSCTTSSGGGT
T ss_pred eEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc--------ccCCeEEEEec----CCcccCCHHHhCcccc
Confidence 89999999999887654221 12234567889999999742 34577888874 578889999997 99
Q ss_pred CeeEecCCCCHHHHHHHHh
Q psy2392 498 PIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~ 516 (1165)
+..+.|..++.++..+|++
T Consensus 640 ~~~i~~~~p~~~~r~~Il~ 658 (806)
T 1ypw_A 640 DQLIYIPLPDEKSRVAILK 658 (806)
T ss_dssp TSCCCCCCCCCSHHHHHTT
T ss_pred CceeecCCCCHHHHHHHHH
Confidence 9999999999999999995
No 55
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.65 E-value=5.8e-16 Score=171.91 Aligned_cols=241 Identities=19% Similarity=0.305 Sum_probs=154.4
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|++.+++.+...+........+....+. ..+.++||+||||||||++|+++|+.++.+++.++++++... |.|.
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~-~~~~ 94 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGI-EPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK-FIGE 94 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCC-CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCC-STTH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHh-ccch
Confidence 47899999999999988654333322211110 124789999999999999999999999999999999887653 5554
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. ...+..++..+
T Consensus 95 ~-~~~~~~~~~~~------------------------------------------------------------------- 106 (285)
T 3h4m_A 95 G-ASLVKDIFKLA------------------------------------------------------------------- 106 (285)
T ss_dssp H-HHHHHHHHHHH-------------------------------------------------------------------
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 3 22222222220
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
. ...++|
T Consensus 107 -----------------------------------------------------------------------~--~~~~~v 113 (285)
T 3h4m_A 107 -----------------------------------------------------------------------K--EKAPSI 113 (285)
T ss_dssp -----------------------------------------------------------------------H--HTCSEE
T ss_pred -----------------------------------------------------------------------H--HcCCeE
Confidence 0 014689
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--CCCee
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIR 500 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~--R~~~~ 500 (1165)
|||||||.+..+..+... ......|+.|+.+++... +.....++++|+++ +.|..+.|.+++ ||+..
T Consensus 114 l~iDEid~l~~~~~~~~~--~~~~~~~~~l~~ll~~~~-----~~~~~~~~~vI~tt----n~~~~l~~~l~~~~Rf~~~ 182 (285)
T 3h4m_A 114 IFIDEIDAIAAKRTDALT--GGDREVQRTLMQLLAEMD-----GFDARGDVKIIGAT----NRPDILDPAILRPGRFDRI 182 (285)
T ss_dssp EEEETTHHHHBCCSSSCC--GGGGHHHHHHHHHHHHHH-----TTCSSSSEEEEEEC----SCGGGBCHHHHSTTSEEEE
T ss_pred EEEECHHHhcccCccccC--CccHHHHHHHHHHHHHhh-----CCCCCCCEEEEEeC----CCchhcCHHHcCCCcCCeE
Confidence 999999999987654211 122235555655543210 01123468888885 467789999987 99999
Q ss_pred EecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhcc
Q psy2392 501 VELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN 580 (1165)
Q Consensus 501 v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~ 580 (1165)
+.|++++.++..+|+. ..+...++ . .+..++.|+..+. ++-.|.++.++..+.......
T Consensus 183 i~~~~p~~~~r~~il~-----------~~~~~~~~--~-~~~~~~~l~~~~~-------g~~~~~i~~l~~~a~~~a~~~ 241 (285)
T 3h4m_A 183 IEVPAPDEKGRLEILK-----------IHTRKMNL--A-EDVNLEEIAKMTE-------GCVGAELKAICTEAGMNAIRE 241 (285)
T ss_dssp EECCCCCHHHHHHHHH-----------HHHTTSCB--C-TTCCHHHHHHHCT-------TCCHHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCHHHHHHHHH-----------HHHhcCCC--C-CcCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999984 11222222 1 2233566666553 345677888777765544322
Q ss_pred cCCCeeEEcccccccccccCc
Q psy2392 581 SNNISLLVDADYVNSRLGDLS 601 (1165)
Q Consensus 581 ~~~~~~~i~~~~v~~~~~~~~ 601 (1165)
.. -.|+.+.+++.+.+..
T Consensus 242 ~~---~~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 242 LR---DYVTMDDFRKAVEKIM 259 (285)
T ss_dssp TC---SSBCHHHHHHHHHHHH
T ss_pred cc---CcCCHHHHHHHHHHHH
Confidence 11 2477777776665443
No 56
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.65 E-value=4.2e-16 Score=185.68 Aligned_cols=305 Identities=17% Similarity=0.234 Sum_probs=164.7
Q ss_pred hhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcC--CCeEEEecCCccccc
Q psy2392 779 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN--APFIKIEATKFTEVG 856 (1165)
Q Consensus 779 L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~--~~fi~l~~se~~~~G 856 (1165)
.+++|+||+++++.+...+... +.+.. ++.++||+||||||||++|+++|+.++ .+|+.++++++.++
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~--~~~~~-------~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~- 104 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELI--KSKKM-------AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST- 104 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHH--HTTCC-------TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS-
T ss_pred chhhccCHHHHHHHHHHHHHHH--HhCCC-------CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH-
Confidence 3578999999999988776532 22211 257999999999999999999999998 99999999999877
Q ss_pred ccccChhhHHHHHHHHHH---hhhhh-------hHHHHhhhHH----HHHHHH-------------------HHHHhhcC
Q psy2392 857 YVGRDVDTIIRDLIDISI---KQTRE-------FEINKVRTRA----EDAAED-------------------RVIDILVP 903 (1165)
Q Consensus 857 yvG~~~~~~l~~lf~~a~---~~~~~-------~~~~~~~~~~----~~~a~~-------------------~vv~~ll~ 903 (1165)
|+|... . ++++|..|. ...++ +.+...+... ...... .+++.+..
T Consensus 105 ~~~~~~-~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 105 EIKKTE-V-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSCHHH-H-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred hhhhhH-H-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 888763 3 888888772 22111 0000001000 000011 12222210
Q ss_pred CcccCCCccccCCcccchhhHHHH--HHhhccCCCCCe-EEEEEecCC--CCcccccCCcchHHH---------HHHHHH
Q psy2392 904 SKEKSNLDTDFNNENNNISTRQIF--RKRLREGALDNK-EIEIELNDT--GPHMEIMSPPGMEEM---------TAQIKT 969 (1165)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~r~~~--~~~l~~g~ld~r-~v~i~~~~~--~~~~~~~~~~~~~~~---------~~~~~~ 969 (1165)
..... .+..+ -.+.+++... ++..|+||+|-. .++|.+|+. ..+.+++..-...++ +..+.+
T Consensus 183 ~~~~~-~~~v~---i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~dl~~~a~~t~ggadl~~ 258 (456)
T 2c9o_A 183 ERVEA-GDVIY---IEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILS 258 (456)
T ss_dssp TTCCT-TEEEE---EETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHHHHHHTC-----------
T ss_pred ccCCC-CCEEE---EEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 00000 00000 0001111111 345789999731 345555543 224444431111111 112222
Q ss_pred HHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhc---CCeeeehhhhhhhccCCCCCCCCccchhh
Q psy2392 970 MFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQ---NGIIFLDEIDKITTRSSQNNNTDISRAGV 1046 (1165)
Q Consensus 970 ~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~---~gIvfiDEiDki~~~~~~~~~~~~~~~gv 1046 (1165)
++..+.. .+...++..- +..+. .+...-.+.+.. ++|+||||+|++... .
T Consensus 259 l~~~i~~--p~~~~I~~~l-r~~I~-----------~~l~~~~~~g~~~v~~~VliIDEa~~l~~~-------------a 311 (456)
T 2c9o_A 259 MMGQLMK--PKKTEITDKL-RGEIN-----------KVVNKYIDQGIAELVPGVLFVDEVHMLDIE-------------C 311 (456)
T ss_dssp ---------------------CHHH-----------HHHHHHHHTTSEEEEECEEEEESGGGCBHH-------------H
T ss_pred HHhhhcc--cchhhHHHHH-HHHHH-----------HHHHHHHHhccccccceEEEEechhhcCHH-------------H
Confidence 2221110 0001111100 00000 011111111211 379999999999765 8
Q ss_pred hhhccccccCccceeeeeeccCceEEEEecC--------CC-CCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhH
Q psy2392 1047 QRDLLPLVEGTTVNTKYGIIKTDHILFIASG--------AF-HLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTN 1117 (1165)
Q Consensus 1047 q~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~g--------af-~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~ 1117 (1165)
|+.||+.+|... .++ ||.++ +. ....|..+.|.+++||.+. .|.+++.+++.+||+
T Consensus 312 ~~aLlk~lEe~~----------~~~-~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~-~~~~~~~~e~~~iL~--- 376 (456)
T 2c9o_A 312 FTYLHRALESSI----------API-VIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMII-RTMLYTPQEMKQIIK--- 376 (456)
T ss_dssp HHHHHHHTTSTT----------CCE-EEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEE-ECCCCCHHHHHHHHH---
T ss_pred HHHHHHHhhccC----------CCE-EEEecCCccccccccccccccccCChhHHhhccee-eCCCCCHHHHHHHHH---
Confidence 999999999642 222 33222 11 1334889999999999985 999999999999998
Q ss_pred HHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1118 VCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1118 ~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
..+..+|+ .++++++..|+..|.+
T Consensus 377 --------~~~~~~~~--~~~~~~~~~i~~~a~~ 400 (456)
T 2c9o_A 377 --------IRAQTEGI--NISEEALNHLGEIGTK 400 (456)
T ss_dssp --------HHHHHHTC--CBCHHHHHHHHHHHHH
T ss_pred --------HHHHHhCC--CCCHHHHHHHHHHccC
Confidence 12233455 6899999999998843
No 57
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.63 E-value=3e-15 Score=170.42 Aligned_cols=138 Identities=16% Similarity=0.261 Sum_probs=96.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee--------eceeecCceEEEEEeCCcccCCCCCCc
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT--------KYGIIKTDHILFIASGAFHLAKPSDLI 490 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~--------~~~~~~t~~ilfI~~gaf~~~~p~~l~ 490 (1165)
.+++|||||||.+... +|..|+..++...+.. +...++..++.||++++ .+..+.
T Consensus 106 ~~~vl~lDEi~~l~~~-------------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn----~~~~l~ 168 (338)
T 3pfi_A 106 EGDILFIDEIHRLSPA-------------IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATT----RAGMLS 168 (338)
T ss_dssp TTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEES----CGGGSC
T ss_pred CCCEEEEechhhcCHH-------------HHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCC----CccccC
Confidence 5789999999999754 6778999998765432 11122333678888853 455689
Q ss_pred hhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 491 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 491 pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
|.|++||+..+.|.+|+.+++..++. ..+...+ +.+++++++.|++.+ .+..|.+.+++
T Consensus 169 ~~L~~R~~~~i~l~~~~~~e~~~il~-----------~~~~~~~--~~~~~~~~~~l~~~~--------~G~~r~l~~~l 227 (338)
T 3pfi_A 169 NPLRDRFGMQFRLEFYKDSELALILQ-----------KAALKLN--KTCEEKAALEIAKRS--------RSTPRIALRLL 227 (338)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHH-----------HHHHHTT--CEECHHHHHHHHHTT--------TTCHHHHHHHH
T ss_pred HHHHhhcCEEeeCCCcCHHHHHHHHH-----------HHHHhcC--CCCCHHHHHHHHHHH--------CcCHHHHHHHH
Confidence 99999999999999999999999884 1122234 478999999998833 46689999999
Q ss_pred HHHHHHhhcccCCCeeEEccccccccc
Q psy2392 571 EKLLEEVSFNSNNISLLVDADYVNSRL 597 (1165)
Q Consensus 571 e~~l~~~~~~~~~~~~~i~~~~v~~~~ 597 (1165)
+++..-...... -.|+.+.++..+
T Consensus 228 ~~~~~~a~~~~~---~~i~~~~~~~~~ 251 (338)
T 3pfi_A 228 KRVRDFADVNDE---EIITEKRANEAL 251 (338)
T ss_dssp HHHHHHHHHTTC---SEECHHHHHHHH
T ss_pred HHHHHHHHhhcC---CccCHHHHHHHH
Confidence 987644322211 246666665544
No 58
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.63 E-value=1.3e-15 Score=181.60 Aligned_cols=217 Identities=24% Similarity=0.362 Sum_probs=143.1
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|++.+++.+.+.+.. ++.+........ ..|.++||+||||||||++|+++|..++.+|+.++++++.+. |+|.
T Consensus 16 ~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~-~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~-~~g~ 92 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEF-LKDPSKFNRIGA-RMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGV 92 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTC-CCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC-CTTH
T ss_pred HHhCCcHHHHHHHHHHHHH-hhChHHHhhcCC-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH-Hhcc
Confidence 4799999999999887653 222211111111 124789999999999999999999999999999999998764 6665
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ +..++.+|..+
T Consensus 93 ~-~~~~r~lf~~A------------------------------------------------------------------- 104 (476)
T 2ce7_A 93 G-AARVRDLFAQA------------------------------------------------------------------- 104 (476)
T ss_dssp H-HHHHHHHHHHH-------------------------------------------------------------------
T ss_pred c-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 4 22233343331
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
.. ..++|
T Consensus 105 -----------------------------------------------------------------------~~--~~p~I 111 (476)
T 2ce7_A 105 -----------------------------------------------------------------------KA--HAPCI 111 (476)
T ss_dssp -----------------------------------------------------------------------HH--TCSEE
T ss_pred -----------------------------------------------------------------------Hh--cCCCE
Confidence 11 14789
Q ss_pred EEEecchhhhccCCCC-CCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCe
Q psy2392 423 IFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPI 499 (1165)
Q Consensus 423 ifiDEidki~~~~~~~-~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~ 499 (1165)
|||||||.+...++.+ ++.+..++.+++.||..++|-. ...++++|++. +.|..+.|+++ |||+.
T Consensus 112 LfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~--------~~~~viVIaaT----n~~~~Ld~allR~gRFd~ 179 (476)
T 2ce7_A 112 VFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD--------SKEGIIVMAAT----NRPDILDPALLRPGRFDK 179 (476)
T ss_dssp EEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC--------GGGTEEEEEEE----SCGGGSCGGGGSTTSSCE
T ss_pred EEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC--------CCCCEEEEEec----CChhhhchhhcccCccee
Confidence 9999999998876532 2344455667888998887521 23467788884 56777889987 59999
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
.|.|.+++.++..+|++ . .+. +..+. ++..++.|+... +++-+|-|.+++.+....
T Consensus 180 ~i~i~~Pd~~~R~~Il~----~-------~~~--~~~l~-~~v~l~~la~~t-------~G~sgadL~~lv~~Aal~ 235 (476)
T 2ce7_A 180 KIVVDPPDMLGRKKILE----I-------HTR--NKPLA-EDVNLEIIAKRT-------PGFVGADLENLVNEAALL 235 (476)
T ss_dssp EEECCCCCHHHHHHHHH----H-------HHT--TSCBC-TTCCHHHHHHTC-------TTCCHHHHHHHHHHHHHH
T ss_pred EeecCCCCHHHHHHHHH----H-------HHH--hCCCc-chhhHHHHHHhc-------CCCcHHHHHHHHHHHHHH
Confidence 99999999999999884 1 111 22221 122255555433 333457788888776543
No 59
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.62 E-value=5.3e-15 Score=162.15 Aligned_cols=236 Identities=23% Similarity=0.331 Sum_probs=151.7
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|++.+++.+...+.. +........... ..+.+++|+||||||||++|+++|+.++.+++.++++++.+. |.|.
T Consensus 12 ~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~-~~~~ 88 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGV 88 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHH-HHCGGGC------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS-CCCC
T ss_pred HHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCC-CCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH-hhhh
Confidence 4799999999998887653 222211111111 124689999999999999999999999999999999987653 5555
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. ...++.+|+.+
T Consensus 89 ~-~~~~~~~~~~a------------------------------------------------------------------- 100 (257)
T 1lv7_A 89 G-ASRVRDMFEQA------------------------------------------------------------------- 100 (257)
T ss_dssp C-HHHHHHHHHHH-------------------------------------------------------------------
T ss_pred h-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 4 22233333221
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
.. ..+++
T Consensus 101 -----------------------------------------------------------------------~~--~~~~i 107 (257)
T 1lv7_A 101 -----------------------------------------------------------------------KK--AAPCI 107 (257)
T ss_dssp -----------------------------------------------------------------------HT--TCSEE
T ss_pred -----------------------------------------------------------------------HH--cCCee
Confidence 00 13679
Q ss_pred EEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--CCCe
Q psy2392 423 IFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPI 499 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~--R~~~ 499 (1165)
+||||||.+....+... +........++.+|..+++.. ...++++|++. +.|..+.|.+.+ ||+.
T Consensus 108 l~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~~vI~~t----n~~~~l~~~l~r~~rf~~ 175 (257)
T 1lv7_A 108 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE--------GNEGIIVIAAT----NRPDVLDPALLRPGRFDR 175 (257)
T ss_dssp EEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC--------SSSCEEEEEEE----SCTTTSCGGGGSTTSSCE
T ss_pred ehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc--------cCCCEEEEEee----CCchhCCHHHcCCCcCCe
Confidence 99999999988755422 122223345667777777632 24567788774 567889999986 9999
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHH-HHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDG-IQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a-~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.+.|..++.++..+|+. . .+.. . .+++++ +..++. . .+++.+|.|.++++++.....
T Consensus 176 ~i~i~~P~~~~r~~il~----~-------~~~~--~--~l~~~~~~~~la~---~----~~G~~~~dl~~l~~~a~~~a~ 233 (257)
T 1lv7_A 176 QVVVGLPDVRGREQILK----V-------HMRR--V--PLAPDIDAAIIAR---G----TPGFSGADLANLVNEAALFAA 233 (257)
T ss_dssp EEECCCCCHHHHHHHHH----H-------HHTT--S--CBCTTCCHHHHHH---T----CTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHH----H-------HHhc--C--CCCccccHHHHHH---H----cCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999998884 1 1221 2 223332 344433 2 134568999999988765443
Q ss_pred cccCCCeeEEccccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
.... -.|+.+.+++.+..
T Consensus 234 ~~~~---~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 234 RGNK---RVVSMVEFEKAKDK 251 (257)
T ss_dssp HTTC---SSBCHHHHHHHHHH
T ss_pred HhCC---CcccHHHHHHHHHH
Confidence 2211 24666666655543
No 60
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.62 E-value=2.7e-15 Score=164.00 Aligned_cols=238 Identities=23% Similarity=0.281 Sum_probs=135.5
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|++.+++.+.+.+.. ++.......... ..+.++||+||||||||++|+++|+.++.+++.++++++.+. |.|.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~-~~~~ 82 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDY-LKSPERFLQLGA-KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEV-IGGL 82 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHH-HHCCC------C-CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSS-STTH
T ss_pred HHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhh-ccCh
Confidence 4799999999999887653 222221111111 135789999999999999999999999999999999987643 4333
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. ...++.++..
T Consensus 83 ~-~~~~~~~~~~-------------------------------------------------------------------- 93 (262)
T 2qz4_A 83 G-AARVRSLFKE-------------------------------------------------------------------- 93 (262)
T ss_dssp H-HHHHHHHHHH--------------------------------------------------------------------
T ss_pred h-HHHHHHHHHH--------------------------------------------------------------------
Confidence 2 1222222221
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
|.. ..++|
T Consensus 94 ----------------------------------------------------------------------a~~--~~~~v 101 (262)
T 2qz4_A 94 ----------------------------------------------------------------------ARA--RAPCI 101 (262)
T ss_dssp ----------------------------------------------------------------------HHH--TCSEE
T ss_pred ----------------------------------------------------------------------HHh--cCCeE
Confidence 111 14789
Q ss_pred EEEecchhhhccCCCCCC--CccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--CCC
Q psy2392 423 IFLDEIDKITTRSSQNNN--TDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFP 498 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~--~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~--R~~ 498 (1165)
|||||||.+...+..... .+.........||..+++.. ...++++|+++ +.|..+.|++++ ||+
T Consensus 102 l~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~--------~~~~~~vi~~t----n~~~~ld~~l~~~~R~~ 169 (262)
T 2qz4_A 102 VYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG--------TTDHVIVLAST----NRADILDGALMRPGRLD 169 (262)
T ss_dssp EEEECC-------------------CHHHHHHHHHHHTCC--------TTCCEEEEEEE----SCGGGGGSGGGSTTSCC
T ss_pred EEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC--------CCCCEEEEecC----CChhhcCHHHhcCCcCC
Confidence 999999999876433110 01111122334555455421 24577888875 456778899987 999
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHH-HHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDD-GIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~-a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
..+.|.+++.++..+|+. .. +...+. ..+++ ..+.|+..+. .+-.|.|.+++..+....
T Consensus 170 ~~i~i~~p~~~~r~~il~----~~-------~~~~~~--~~~~~~~~~~l~~~~~-------g~~~~~l~~l~~~a~~~a 229 (262)
T 2qz4_A 170 RHVFIDLPTLQERREIFE----QH-------LKSLKL--TQSSTFYSQRLAELTP-------GFSGADIANICNEAALHA 229 (262)
T ss_dssp EEEECCSCCHHHHHHHHH----HH-------HHHTTC--CBTHHHHHHHHHHTCT-------TCCHHHHHHHHHHHHTC-
T ss_pred eEEEeCCcCHHHHHHHHH----HH-------HHhCCC--CcchhhHHHHHHHHCC-------CCCHHHHHHHHHHHHHHH
Confidence 999999999999999884 12 222333 33444 2455655442 333467777777654322
Q ss_pred hcccCCCeeEEccccccccccc
Q psy2392 578 SFNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 578 ~~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
.. ...-.|+.+.+.+.+..
T Consensus 230 ~~---~~~~~i~~~d~~~a~~~ 248 (262)
T 2qz4_A 230 AR---EGHTSVHTLNFEYAVER 248 (262)
T ss_dssp ----------CCBCCHHHHHHH
T ss_pred HH---cCCCCCCHHHHHHHHHH
Confidence 11 11134666666555443
No 61
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.62 E-value=1.9e-15 Score=180.13 Aligned_cols=135 Identities=18% Similarity=0.215 Sum_probs=95.5
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCC-------c-ccCCCCCCch
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGA-------F-HLAKPSDLIP 491 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~ga-------f-~~~~p~~l~p 491 (1165)
++|+||||+|+++.. .++.||+.+|.. ..++++++++. . ....|..+.|
T Consensus 296 ~~VliIDEa~~l~~~-------------a~~aLlk~lEe~----------~~~~~il~tn~~~~~i~~~~~~~~~~~l~~ 352 (456)
T 2c9o_A 296 PGVLFVDEVHMLDIE-------------CFTYLHRALESS----------IAPIVIFASNRGNCVIRGTEDITSPHGIPL 352 (456)
T ss_dssp ECEEEEESGGGCBHH-------------HHHHHHHHTTST----------TCCEEEEEECCSEEECBTTSSCEEETTCCH
T ss_pred ceEEEEechhhcCHH-------------HHHHHHHHhhcc----------CCCEEEEecCCccccccccccccccccCCh
Confidence 379999999999765 777999999953 23333324311 1 1233788999
Q ss_pred hhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHH
Q psy2392 492 ELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 571 (1165)
Q Consensus 492 el~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie 571 (1165)
.+++||.++ .|.+++.+++.+||.. .+..+++ .+++++++.|++.+.+ ++.|....+++
T Consensus 353 ~i~sR~~~~-~~~~~~~~e~~~iL~~-----------~~~~~~~--~~~~~~~~~i~~~a~~-------g~~r~a~~ll~ 411 (456)
T 2c9o_A 353 DLLDRVMII-RTMLYTPQEMKQIIKI-----------RAQTEGI--NISEEALNHLGEIGTK-------TTLRYSVQLLT 411 (456)
T ss_dssp HHHTTEEEE-ECCCCCHHHHHHHHHH-----------HHHHHTC--CBCHHHHHHHHHHHHH-------SCHHHHHHTHH
T ss_pred hHHhhccee-eCCCCCHHHHHHHHHH-----------HHHHhCC--CCCHHHHHHHHHHccC-------CCHHHHHHHHH
Confidence 999999985 9999999999999941 1223344 6899999999998843 57899999888
Q ss_pred HHHHHhhcccCCCeeEEcccccccccccCc
Q psy2392 572 KLLEEVSFNSNNISLLVDADYVNSRLGDLS 601 (1165)
Q Consensus 572 ~~l~~~~~~~~~~~~~i~~~~v~~~~~~~~ 601 (1165)
.+..-...+-. -.|+.+.|++.+.-++
T Consensus 412 ~a~~~A~~~~~---~~v~~~~v~~~~~~~~ 438 (456)
T 2c9o_A 412 PANLLAKINGK---DSIEKEHVEEISELFY 438 (456)
T ss_dssp HHHHHHHHTTC---SSBCHHHHHHHHHHSC
T ss_pred HHHHHHhhcCC---CccCHHHHHHHHHHhc
Confidence 87543322111 2488888888766544
No 62
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.62 E-value=1.3e-15 Score=171.18 Aligned_cols=155 Identities=17% Similarity=0.184 Sum_probs=102.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHH
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAED 895 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~ 895 (1165)
|.++||+||||||||++|+++|+.++.+|+.++++++.+. |+|... ..++++|..|...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~-~~g~~~-~~i~~~f~~a~~~------------------- 94 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESG-NAGEPA-KLIRQRYREAAEI------------------- 94 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC----HHH-HHHHHHHHHHHHH-------------------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhc-cCchhH-HHHHHHHHHHHHH-------------------
Confidence 6899999999999999999999999999999999998876 887763 4466665544111
Q ss_pred HHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhC
Q psy2392 896 RVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIG 975 (1165)
Q Consensus 896 ~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 975 (1165)
T Consensus 95 -------------------------------------------------------------------------------- 94 (293)
T 3t15_A 95 -------------------------------------------------------------------------------- 94 (293)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhcccccc
Q psy2392 976 NHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVE 1055 (1165)
Q Consensus 976 ~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~E 1055 (1165)
. ...+++|+||||||+++....+..........+|..||.+++
T Consensus 95 ------------------------------------~-~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld 137 (293)
T 3t15_A 95 ------------------------------------I-RKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 137 (293)
T ss_dssp ------------------------------------H-TTSSCCCEEEECCC--------------CHHHHHHHHHHHHH
T ss_pred ------------------------------------H-hcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhc
Confidence 0 011578999999999998644322222334468999999999
Q ss_pred Cccce---eeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCeEEEcCCCCHHHHHHHHh
Q psy2392 1056 GTTVN---TKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1056 g~~v~---~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i~v~l~~l~~~~l~~il~ 1114 (1165)
+.... ..++.....+++||++++ .|+.+.|+|+ |||...+.+ ++.++..+|++
T Consensus 138 ~~~~~~~~~~~~~~~~~~v~vI~ttN----~~~~ld~al~R~~R~d~~i~~--P~~~~r~~Il~ 195 (293)
T 3t15_A 138 NPTNVQLPGMYNKQENARVPIIVTGN----DFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCT 195 (293)
T ss_dssp CCC-----------CCCCCCEEEECS----SCCC--CHHHHHHHEEEEEEC--CCHHHHHHHHH
T ss_pred cccccccccccccccCCCcEEEEecC----CcccCCHHHhCCCCCceeEeC--cCHHHHHHHHH
Confidence 65432 223345667899999974 7888999998 699988765 39999999987
No 63
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.61 E-value=1.3e-15 Score=171.29 Aligned_cols=155 Identities=17% Similarity=0.188 Sum_probs=100.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHH
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAED 297 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1165)
|.++||+||||||||++|+++|+.++.+|++++++++.+. |+|.. +..++.+|..+..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~-~~g~~-~~~i~~~f~~a~~-------------------- 93 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESG-NAGEP-AKLIRQRYREAAE-------------------- 93 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC----HH-HHHHHHHHHHHHH--------------------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhc-cCchh-HHHHHHHHHHHHH--------------------
Confidence 5799999999999999999999999999999999998764 77765 3445555544200
Q ss_pred HHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcC
Q psy2392 298 RVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIG 377 (1165)
Q Consensus 298 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (1165)
T Consensus 94 -------------------------------------------------------------------------------- 93 (293)
T 3t15_A 94 -------------------------------------------------------------------------------- 93 (293)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhccccc
Q psy2392 378 NHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVE 457 (1165)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~E 457 (1165)
... ..+++||||||||++++...+..........++..||.+++
T Consensus 94 -----------------------------------~~~-~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld 137 (293)
T 3t15_A 94 -----------------------------------IIR-KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 137 (293)
T ss_dssp -----------------------------------HHT-TSSCCCEEEECCC--------------CHHHHHHHHHHHHH
T ss_pred -----------------------------------HHh-cCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhc
Confidence 000 12578999999999998654322223344568899999998
Q ss_pred Cceeee---eceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCeeEecCCCCHHHHHHHHh
Q psy2392 458 GTTVNT---KYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 458 g~~v~~---~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
+..... .+......+++||+|+ +.|+.+.|+|+ +||+..+.+ ++.++..+|++
T Consensus 138 ~~~~~~~~~~~~~~~~~~v~vI~tt----N~~~~ld~al~R~~R~d~~i~~--P~~~~r~~Il~ 195 (293)
T 3t15_A 138 NPTNVQLPGMYNKQENARVPIIVTG----NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCT 195 (293)
T ss_dssp CCC-----------CCCCCCEEEEC----SSCCC--CHHHHHHHEEEEEEC--CCHHHHHHHHH
T ss_pred cccccccccccccccCCCcEEEEec----CCcccCCHHHhCCCCCceeEeC--cCHHHHHHHHH
Confidence 654221 1233456788999996 57888999998 699988764 49999999984
No 64
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.60 E-value=9.6e-15 Score=167.92 Aligned_cols=142 Identities=17% Similarity=0.160 Sum_probs=97.1
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCe
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 499 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~ 499 (1165)
++||||||||.+... .++.|+..+|...... ........+.+|++. ..+.|..+.|.|++||.+
T Consensus 190 ~~vl~IDEi~~l~~~-------------~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t--~~~~~~~l~~~l~sR~~~ 253 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIE-------------SFSFLNRALESDMAPV-LIMATNRGITRIRGT--SYQSPHGIPIDLLDRLLI 253 (368)
T ss_dssp BCEEEEESGGGSBHH-------------HHHHHHHHTTCTTCCE-EEEEESCSEEECBTS--SCEEETTCCHHHHTTEEE
T ss_pred CceEEEhhccccChH-------------HHHHHHHHhhCcCCCe-eeeecccceeeeecc--CCCCcccCCHHHHhhccE
Confidence 579999999999754 6678888888643211 000111122222222 223467799999999988
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhc
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSF 579 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~ 579 (1165)
+.|++|+.+++.+|+. ..+..+++ .+++++++.|++.+.. ++.|.+.++++++......
T Consensus 254 -i~~~~~~~~e~~~il~-----------~~~~~~~~--~~~~~~l~~l~~~~~~-------G~~r~~~~ll~~a~~~A~~ 312 (368)
T 3uk6_A 254 -VSTTPYSEKDTKQILR-----------IRCEEEDV--EMSEDAYTVLTRIGLE-------TSLRYAIQLITAASLVCRK 312 (368)
T ss_dssp -EEECCCCHHHHHHHHH-----------HHHHHTTC--CBCHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHH
T ss_pred -EEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHH
Confidence 6999999999999994 12233444 6899999999998842 6789999999998765432
Q ss_pred ccCCCeeEEcccccccccccCc
Q psy2392 580 NSNNISLLVDADYVNSRLGDLS 601 (1165)
Q Consensus 580 ~~~~~~~~i~~~~v~~~~~~~~ 601 (1165)
.- .-.||.+.|++.+...+
T Consensus 313 ~~---~~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 313 RK---GTEVQVDDIKRVYSLFL 331 (368)
T ss_dssp TT---CSSBCHHHHHHHHHHSB
T ss_pred hC---CCCCCHHHHHHHHHHhc
Confidence 21 13588888888776544
No 65
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.59 E-value=1.4e-14 Score=164.07 Aligned_cols=130 Identities=18% Similarity=0.267 Sum_probs=90.7
Q ss_pred cceEEEEecchhhh-ccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCC
Q psy2392 419 QNGIIFLDEIDKIT-TRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF 497 (1165)
Q Consensus 419 ~~~IifiDEidki~-~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~ 497 (1165)
.++||||||+|.+. +. .|+.|+.++|.. ..++.||+++ +.+..+.|.|++||
T Consensus 105 ~~~vliiDEi~~l~~~~-------------~~~~L~~~le~~----------~~~~~iI~~~----n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAE-------------SQRHLRSFMEAY----------SSNCSIIITA----NNIDGIIKPLQSRC 157 (324)
T ss_dssp CEEEEEEESCCCGGGHH-------------HHHHHHHHHHHH----------GGGCEEEEEE----SSGGGSCTTHHHHS
T ss_pred CCeEEEEECCcccCcHH-------------HHHHHHHHHHhC----------CCCcEEEEEe----CCccccCHHHHhhC
Confidence 46899999999997 43 677899988852 2345566653 35567999999999
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCH-HHHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVD-DGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~-~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
. ++.|++++.+++.+|+. .+.......+..+|+ .+++ ++++.|++.+ +++.|.+.+.++++..
T Consensus 158 ~-~i~~~~~~~~e~~~il~----~~~~~l~~~~~~~~~--~~~~~~~~~~l~~~~--------~gd~R~a~~~L~~~~~- 221 (324)
T 3u61_B 158 R-VITFGQPTDEDKIEMMK----QMIRRLTEICKHEGI--AIADMKVVAALVKKN--------FPDFRKTIGELDSYSS- 221 (324)
T ss_dssp E-EEECCCCCHHHHHHHHH----HHHHHHHHHHHHHTC--CBSCHHHHHHHHHHT--------CSCTTHHHHHHHHHGG-
T ss_pred c-EEEeCCCCHHHHHHHHH----HHHHHHHHHHHHcCC--CCCcHHHHHHHHHhC--------CCCHHHHHHHHHHHhc-
Confidence 7 48999999999988884 445555566667776 5777 9999999875 5789999999888751
Q ss_pred hhcccCCCeeEEccccccccccc
Q psy2392 577 VSFNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 577 ~~~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
.-.||.+.|++.+..
T Consensus 222 --------~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 222 --------KGVLDAGILSLVTND 236 (324)
T ss_dssp --------GTCBCC---------
T ss_pred --------cCCCCHHHHHHHhCC
Confidence 013777777665543
No 66
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.59 E-value=3.1e-15 Score=179.39 Aligned_cols=215 Identities=20% Similarity=0.337 Sum_probs=148.5
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|++.+++.+.+.+....++..+....+. ..+.++||+||||||||++|+++|+.++.+|+.++++++.+. |.|.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~-~~g~ 281 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK-LAGE 281 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS-CTTH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh-hcch
Confidence 47999999999999988765444433322111 135799999999999999999999999999999999988754 6655
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
.. +.++.+|..+
T Consensus 282 ~~-~~~~~~f~~A------------------------------------------------------------------- 293 (489)
T 3hu3_A 282 SE-SNLRKAFEEA------------------------------------------------------------------- 293 (489)
T ss_dssp HH-HHHHHHHHHH-------------------------------------------------------------------
T ss_pred hH-HHHHHHHHHH-------------------------------------------------------------------
Confidence 42 2233333331
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
.. ..++|
T Consensus 294 -----------------------------------------------------------------------~~--~~p~i 300 (489)
T 3hu3_A 294 -----------------------------------------------------------------------EK--NAPAI 300 (489)
T ss_dssp -----------------------------------------------------------------------HH--TCSEE
T ss_pred -----------------------------------------------------------------------Hh--cCCcE
Confidence 00 14689
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--CCCee
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIR 500 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~--R~~~~ 500 (1165)
|||||||.+.+.++.. ..+ ....+|..||..+++.. ...++++|+++ +.|..+.|+|++ ||+..
T Consensus 301 LfLDEId~l~~~~~~~-~~~-~~~~~~~~LL~~ld~~~--------~~~~v~vIaaT----n~~~~Ld~al~r~gRf~~~ 366 (489)
T 3hu3_A 301 IFIDELDAIAPKREKT-HGE-VERRIVSQLLTLMDGLK--------QRAHVIVMAAT----NRPNSIDPALRRFGRFDRE 366 (489)
T ss_dssp EEEESHHHHCBCTTSC-CCH-HHHHHHHHHHHHHHHSC--------TTSCEEEEEEE----SCGGGBCGGGGSTTSSCEE
T ss_pred EEecchhhhccccccc-cch-HHHHHHHHHHHHhhccc--------cCCceEEEEec----CCccccCHHHhCCCcCceE
Confidence 9999999999876541 122 22358889999998532 34568888884 567778999986 99999
Q ss_pred EecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHH
Q psy2392 501 VELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 575 (1165)
Q Consensus 501 v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~ 575 (1165)
+.|..++.++..+||. .++ .++.+. .+..++.++..+. ++-+|-|..++.....
T Consensus 367 i~i~~P~~~eR~~IL~-----------~~~--~~~~l~-~~~~l~~la~~t~-------g~s~~dL~~L~~~A~~ 420 (489)
T 3hu3_A 367 VDIGIPDATGRLEILQ-----------IHT--KNMKLA-DDVDLEQVANETH-------GHVGADLAALCSEAAL 420 (489)
T ss_dssp EECCCCCHHHHHHHHH-----------HHT--TTSCBC-TTCCHHHHHHTCT-------TCCHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHH-----------HHH--hcCCCc-chhhHHHHHHHcc-------CCcHHHHHHHHHHHHH
Confidence 9999999999999994 111 222222 2223556665442 3445667777766543
No 67
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.58 E-value=6e-15 Score=167.93 Aligned_cols=101 Identities=18% Similarity=0.301 Sum_probs=77.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee--------eeeeccCceEEEEecCCCCCCCCCCCc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT--------KYGIIKTDHILFIASGAFHLAKPSDLI 1088 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~--------k~~~~~t~~ilfI~~gaf~~~~p~dl~ 1088 (1165)
..+++||||||.+... +|..|+..+|...+.. +...++..++.||+++. .+..+.
T Consensus 106 ~~~vl~lDEi~~l~~~-------------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn----~~~~l~ 168 (338)
T 3pfi_A 106 EGDILFIDEIHRLSPA-------------IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATT----RAGMLS 168 (338)
T ss_dssp TTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEES----CGGGSC
T ss_pred CCCEEEEechhhcCHH-------------HHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCC----CccccC
Confidence 5789999999999754 8899999998765432 11123333678888865 455688
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHH
Q psy2392 1089 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAE 1147 (1165)
Q Consensus 1089 pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~ 1147 (1165)
|.|.+||...+.|.+++.+++..++. ..+...++ .+++++++.|+.
T Consensus 169 ~~L~~R~~~~i~l~~~~~~e~~~il~-----------~~~~~~~~--~~~~~~~~~l~~ 214 (338)
T 3pfi_A 169 NPLRDRFGMQFRLEFYKDSELALILQ-----------KAALKLNK--TCEEKAALEIAK 214 (338)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHH-----------HHHHHTTC--EECHHHHHHHHH
T ss_pred HHHHhhcCEEeeCCCcCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHH
Confidence 99999999999999999999999888 22333454 789999999988
No 68
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.58 E-value=4.2e-15 Score=178.25 Aligned_cols=177 Identities=23% Similarity=0.405 Sum_probs=130.8
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|+|++.+++.+.+.+....+...+..... ...+.++||+||||||||++|+++|+.++.+|+.++++++.+. |.|+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g-~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~-~~g~ 281 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIG-VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK-LAGE 281 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS-CTTH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh-hcch
Confidence 6899999999999998875432222111110 1125789999999999999999999999999999999998766 7665
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
.. ..++.+|..|.
T Consensus 282 ~~-~~~~~~f~~A~------------------------------------------------------------------ 294 (489)
T 3hu3_A 282 SE-SNLRKAFEEAE------------------------------------------------------------------ 294 (489)
T ss_dssp HH-HHHHHHHHHHH------------------------------------------------------------------
T ss_pred hH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 53 23444443320
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
...++|
T Consensus 295 --------------------------------------------------------------------------~~~p~i 300 (489)
T 3hu3_A 295 --------------------------------------------------------------------------KNAPAI 300 (489)
T ss_dssp --------------------------------------------------------------------------HTCSEE
T ss_pred --------------------------------------------------------------------------hcCCcE
Confidence 014579
Q ss_pred eeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--cCCeE
Q psy2392 1021 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIR 1098 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~i~ 1098 (1165)
+||||||.++...+.. ..+. ...+|..||.++++.. ...++.+|++.. .|..+.|.|++ ||...
T Consensus 301 LfLDEId~l~~~~~~~-~~~~-~~~~~~~LL~~ld~~~--------~~~~v~vIaaTn----~~~~Ld~al~r~gRf~~~ 366 (489)
T 3hu3_A 301 IFIDELDAIAPKREKT-HGEV-ERRIVSQLLTLMDGLK--------QRAHVIVMAATN----RPNSIDPALRRFGRFDRE 366 (489)
T ss_dssp EEEESHHHHCBCTTSC-CCHH-HHHHHHHHHHHHHHSC--------TTSCEEEEEEES----CGGGBCGGGGSTTSSCEE
T ss_pred EEecchhhhccccccc-cchH-HHHHHHHHHHHhhccc--------cCCceEEEEecC----CccccCHHHhCCCcCceE
Confidence 9999999999875431 1222 2348899999999532 345678888864 67778899987 99999
Q ss_pred EEcCCCCHHHHHHHHh
Q psy2392 1099 VELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~ 1114 (1165)
+.|..++.++..+||+
T Consensus 367 i~i~~P~~~eR~~IL~ 382 (489)
T 3hu3_A 367 VDIGIPDATGRLEILQ 382 (489)
T ss_dssp EECCCCCHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHH
Confidence 9999999999999998
No 69
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.58 E-value=8e-15 Score=162.73 Aligned_cols=180 Identities=23% Similarity=0.410 Sum_probs=125.1
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|+|++.+++.+...+........+..... ...+.++||+||||||||++|+++|+.++.+|+.++++++... |.|.
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~-~~~~ 94 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVG-IEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK-FIGE 94 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHC-CCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCC-STTH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHh-ccch
Confidence 6899999999999988865432211111000 0125789999999999999999999999999999999988766 6654
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
.. ..+..+|..+
T Consensus 95 ~~-~~~~~~~~~~------------------------------------------------------------------- 106 (285)
T 3h4m_A 95 GA-SLVKDIFKLA------------------------------------------------------------------- 106 (285)
T ss_dssp HH-HHHHHHHHHH-------------------------------------------------------------------
T ss_pred HH-HHHHHHHHHH-------------------------------------------------------------------
Confidence 42 2233333222
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
. ...++|
T Consensus 107 -----------------------------------------------------------------------~--~~~~~v 113 (285)
T 3h4m_A 107 -----------------------------------------------------------------------K--EKAPSI 113 (285)
T ss_dssp -----------------------------------------------------------------------H--HTCSEE
T ss_pred -----------------------------------------------------------------------H--HcCCeE
Confidence 0 014579
Q ss_pred eeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--cCCeE
Q psy2392 1021 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIR 1098 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~i~ 1098 (1165)
+||||||.+........ .......|+.|+.+++.-. +.....++.+|+++. .|..+.|.+++ ||...
T Consensus 114 l~iDEid~l~~~~~~~~--~~~~~~~~~~l~~ll~~~~-----~~~~~~~~~vI~ttn----~~~~l~~~l~~~~Rf~~~ 182 (285)
T 3h4m_A 114 IFIDEIDAIAAKRTDAL--TGGDREVQRTLMQLLAEMD-----GFDARGDVKIIGATN----RPDILDPAILRPGRFDRI 182 (285)
T ss_dssp EEEETTHHHHBCCSSSC--CGGGGHHHHHHHHHHHHHH-----TTCSSSSEEEEEECS----CGGGBCHHHHSTTSEEEE
T ss_pred EEEECHHHhcccCcccc--CCccHHHHHHHHHHHHHhh-----CCCCCCCEEEEEeCC----CchhcCHHHcCCCcCCeE
Confidence 99999999987654311 1122346677766654210 111234688888864 67788899988 99999
Q ss_pred EEcCCCCHHHHHHHHh
Q psy2392 1099 VELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~ 1114 (1165)
+.|++++.++..+|++
T Consensus 183 i~~~~p~~~~r~~il~ 198 (285)
T 3h4m_A 183 IEVPAPDEKGRLEILK 198 (285)
T ss_dssp EECCCCCHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHH
Confidence 9999999999999997
No 70
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.57 E-value=6.4e-16 Score=170.22 Aligned_cols=236 Identities=24% Similarity=0.383 Sum_probs=144.3
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccC--CCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITG--PLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 260 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~--~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~Gyv 260 (1165)
++++|++.+++.+...+.. +....... ... .+.++||+||||||||++|+++|+.++.+++.++++.+.+. |.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~---~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~-~~ 85 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDF-LKYPERYANLGAK---IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FV 85 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCC---CCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS-CS
T ss_pred HHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCC---CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh-hc
Confidence 4799999999999887653 22211111 111 23679999999999999999999999999999999887653 54
Q ss_pred ccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCC
Q psy2392 261 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 340 (1165)
Q Consensus 261 G~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 340 (1165)
|.... .++.+|..
T Consensus 86 ~~~~~-~~~~~~~~------------------------------------------------------------------ 98 (268)
T 2r62_A 86 GLGAS-RVRDLFET------------------------------------------------------------------ 98 (268)
T ss_dssp SSCSS-SSSTTHHH------------------------------------------------------------------
T ss_pred chHHH-HHHHHHHH------------------------------------------------------------------
Confidence 44311 11111111
Q ss_pred cEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccc
Q psy2392 341 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 420 (1165)
Q Consensus 341 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 420 (1165)
|.. ..+
T Consensus 99 ------------------------------------------------------------------------a~~--~~~ 104 (268)
T 2r62_A 99 ------------------------------------------------------------------------AKK--QAP 104 (268)
T ss_dssp ------------------------------------------------------------------------HHH--SCS
T ss_pred ------------------------------------------------------------------------HHh--cCC
Confidence 111 146
Q ss_pred eEEEEecchhhhccCCCCC--CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--C
Q psy2392 421 GIIFLDEIDKITTRSSQNN--NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--R 496 (1165)
Q Consensus 421 ~IifiDEidki~~~~~~~~--~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~--R 496 (1165)
+||||||||.+...+..+. +.+.....++..||..+++.. -...++++|+++ +.|..+.|++++ |
T Consensus 105 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~v~vi~tt----n~~~~ld~~l~r~~R 173 (268)
T 2r62_A 105 SIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG-------SENAPVIVLAAT----NRPEILDPALMRPGR 173 (268)
T ss_dssp CEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS-------CSCSCCEEEECB----SCCTTSCGGGGSSSS
T ss_pred eEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc-------cCCCCEEEEEec----CCchhcCHhHcCCCC
Confidence 8999999999987653211 122223346677888887632 123457778774 567778899987 9
Q ss_pred CCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 497 FPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 497 ~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
|+..+.|.+++.++..+|+. ..+. ++.+. ++..++.|++.+ .++-.|.|+++++++...
T Consensus 174 f~~~i~i~~p~~~~r~~il~-----------~~~~--~~~~~-~~~~~~~la~~~-------~g~~g~dl~~l~~~a~~~ 232 (268)
T 2r62_A 174 FDRQVLVDKPDFNGRVEILK-----------VHIK--GVKLA-NDVNLQEVAKLT-------AGLAGADLANIINEAALL 232 (268)
T ss_dssp SCCCCBCCCCCTTTHHHHHH-----------HHTS--SSCCC-SSCCTTTTTSSS-------CSSCHHHHHHHHHHHHHT
T ss_pred CCeEEEecCcCHHHHHHHHH-----------HHHh--cCCCC-CccCHHHHHHHc-------CCCCHHHHHHHHHHHHHH
Confidence 99999999999999999984 1122 22211 222244454433 233347888888877643
Q ss_pred hhcccCCCeeEEccccccccccc
Q psy2392 577 VSFNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 577 ~~~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
... .....|+.+.+.+.+..
T Consensus 233 a~~---~~~~~i~~~~~~~a~~~ 252 (268)
T 2r62_A 233 AGR---NNQKEVRQQHLKEAVER 252 (268)
T ss_dssp TSS---SCCCSCCHHHHHTSCTT
T ss_pred HHH---hccCCcCHHHHHHHHHH
Confidence 211 11124666666555543
No 71
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.57 E-value=2.8e-15 Score=178.06 Aligned_cols=98 Identities=28% Similarity=0.423 Sum_probs=68.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCC-CCCchhhhccC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKP-SDLIPELQGRF 1095 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p-~dl~pel~gR~ 1095 (1165)
..+|+||||||.+... .|..||+.+|... +.||+++. .+| ..+.+.|.+||
T Consensus 106 ~~~iLfIDEI~~l~~~-------------~q~~LL~~le~~~------------v~lI~att---~n~~~~l~~aL~sR~ 157 (447)
T 3pvs_A 106 RRTILFVDEVHRFNKS-------------QQDAFLPHIEDGT------------ITFIGATT---ENPSFELNSALLSRA 157 (447)
T ss_dssp CCEEEEEETTTCC-------------------CCHHHHHTTS------------CEEEEEES---SCGGGSSCHHHHTTE
T ss_pred CCcEEEEeChhhhCHH-------------HHHHHHHHHhcCc------------eEEEecCC---CCcccccCHHHhCce
Confidence 4689999999999765 7889999999632 55666653 344 46889999999
Q ss_pred CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1096 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
.+ +.|++|+.+++.++|. ..+.+...-+. +..+.+++++++.|+..+
T Consensus 158 ~v-~~l~~l~~edi~~il~----~~l~~~~~~~~--~~~~~i~~~al~~L~~~~ 204 (447)
T 3pvs_A 158 RV-YLLKSLSTEDIEQVLT----QAMEDKTRGYG--GQDIVLPDETRRAIAELV 204 (447)
T ss_dssp EE-EECCCCCHHHHHHHHH----HHHHCTTTSST--TSSEECCHHHHHHHHHHH
T ss_pred eE-EeeCCcCHHHHHHHHH----HHHHHHhhhhc--cccCcCCHHHHHHHHHHC
Confidence 86 5799999999999998 22221111111 145689999999999884
No 72
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.57 E-value=1.2e-14 Score=173.46 Aligned_cols=178 Identities=28% Similarity=0.450 Sum_probs=126.5
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|+|++++++.+.+.+.. ++......... ...|+++||+||||||||++|+++|+.++.+|+.++++++.+. |+|.
T Consensus 16 ~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g-~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~-~~g~ 92 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEF-LKDPSKFNRIG-ARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGV 92 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHH-HHCTHHHHTTT-CCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC-CTTH
T ss_pred HHhCCcHHHHHHHHHHHHH-hhChHHHhhcC-CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH-Hhcc
Confidence 6899999999999987753 22111100000 0125789999999999999999999999999999999999876 7775
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
+. ..++.+|..|.
T Consensus 93 ~~-~~~r~lf~~A~------------------------------------------------------------------ 105 (476)
T 2ce7_A 93 GA-ARVRDLFAQAK------------------------------------------------------------------ 105 (476)
T ss_dssp HH-HHHHHHHHHHH------------------------------------------------------------------
T ss_pred cH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 42 33444443330
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
...++|
T Consensus 106 --------------------------------------------------------------------------~~~p~I 111 (476)
T 2ce7_A 106 --------------------------------------------------------------------------AHAPCI 111 (476)
T ss_dssp --------------------------------------------------------------------------HTCSEE
T ss_pred --------------------------------------------------------------------------hcCCCE
Confidence 014679
Q ss_pred eeehhhhhhhccCCCC-CCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCe
Q psy2392 1021 IFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPI 1097 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~-~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i 1097 (1165)
|||||||.+....+.. ++.+..++.+++.||..++|.. ...++.+|++.. .|..+.|.++ |||..
T Consensus 112 LfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~--------~~~~viVIaaTn----~~~~Ld~allR~gRFd~ 179 (476)
T 2ce7_A 112 VFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD--------SKEGIIVMAATN----RPDILDPALLRPGRFDK 179 (476)
T ss_dssp EEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC--------GGGTEEEEEEES----CGGGSCGGGGSTTSSCE
T ss_pred EEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC--------CCCCEEEEEecC----ChhhhchhhcccCccee
Confidence 9999999998875432 3344455567888998888521 234678888864 5777888887 59999
Q ss_pred EEEcCCCCHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~ 1114 (1165)
.+.+++++.++..+||+
T Consensus 180 ~i~i~~Pd~~~R~~Il~ 196 (476)
T 2ce7_A 180 KIVVDPPDMLGRKKILE 196 (476)
T ss_dssp EEECCCCCHHHHHHHHH
T ss_pred EeecCCCCHHHHHHHHH
Confidence 99999999999999886
No 73
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.56 E-value=2.8e-14 Score=155.84 Aligned_cols=78 Identities=31% Similarity=0.425 Sum_probs=57.3
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG 859 (1165)
+++|+|++.+++.+...+.. +......... ....+.++||+||||||||++|+++|+.++.+|+.++++++.+. |.|
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~-g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~-~~~ 81 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDY-LKSPERFLQL-GAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEV-IGG 81 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHH-HHCCC-------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSS-STT
T ss_pred HHHhCCHHHHHHHHHHHHHH-HHCHHHHHHc-CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhh-ccC
Confidence 36899999999999887753 1111111100 01125789999999999999999999999999999999998765 544
Q ss_pred c
Q psy2392 860 R 860 (1165)
Q Consensus 860 ~ 860 (1165)
.
T Consensus 82 ~ 82 (262)
T 2qz4_A 82 L 82 (262)
T ss_dssp H
T ss_pred h
Confidence 3
No 74
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.56 E-value=2.8e-14 Score=162.21 Aligned_cols=161 Identities=15% Similarity=0.131 Sum_probs=98.0
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceee-cCceEEEEEeCCccc-CCCCCCchhhhCCC
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII-KTDHILFIASGAFHL-AKPSDLIPELQGRF 497 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~-~t~~ilfI~~gaf~~-~~p~~l~pel~~R~ 497 (1165)
.+|+||||||++.+. +|+.|++.+|...++...... ...++++|++.+-.. .....+.|+|++||
T Consensus 110 ~~vl~iDEi~~~~~~-------------~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf 176 (331)
T 2r44_A 110 SNFILADEVNRSPAK-------------VQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRF 176 (331)
T ss_dssp SSEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTS
T ss_pred ccEEEEEccccCCHH-------------HHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhhe
Confidence 479999999998655 677899999876655422111 123456666632110 01123899999999
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHh-------------HHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccC------
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVC-------------LTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERT------ 558 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~-------------l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~------ 558 (1165)
.+.+.+.+++.++..+||...... -+....+.. . ++.+++++++.+++.+.......
T Consensus 177 ~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~--~v~~~~~~~~~i~~~~~~~r~~~~~~~~~ 252 (331)
T 2r44_A 177 MMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEI--N--KVTISESLEKYIIELVFATRFPAEYGLEA 252 (331)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHH--H--TCBCCHHHHHHHHHHHHHHHSGGGGTCHH
T ss_pred eEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHh--c--cCCCCHHHHHHHHHHHHHHhccccccccc
Confidence 999999999999999999632110 011111111 2 45788999999998875431111
Q ss_pred ------CccCcchhHHHHHHHHHHhhcccCCCeeEEcccccccccccC
Q psy2392 559 ------ENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGDL 600 (1165)
Q Consensus 559 ------~~~GAR~l~~~ie~~l~~~~~~~~~~~~~i~~~~v~~~~~~~ 600 (1165)
-..+.|.+.+++..+..-...+ .. -.|+.+.|++.+...
T Consensus 253 ~~~~~~~~~s~R~~~~ll~~a~a~A~l~--g~-~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 253 EASYILYGASTRAAINLNRVAKAMAFFN--NR-DYVLPEDIKEVAYDI 297 (331)
T ss_dssp HHHHEEECCCHHHHHHHHHHHHHHHHHT--TC-SBCCHHHHHHHHHHH
T ss_pred cccccccCcChhHHHHHHHHHHHHHHHc--CC-CCCCHHHHHHHHHHH
Confidence 1235788888877654333222 11 236777776655543
No 75
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.54 E-value=8.4e-14 Score=152.56 Aligned_cols=178 Identities=28% Similarity=0.434 Sum_probs=123.9
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|+|++.+++.+...+.. +.......... ...+.+++|+||||||||++|+++|+.++.+|+.++++++.+. |.|.
T Consensus 12 ~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~-~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~-~~~~ 88 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEY-LREPSRFQKLG-GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGV 88 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHH-HHCGGGC------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS-CCCC
T ss_pred HHhcCcHHHHHHHHHHHHH-HhCHHHHHHcC-CCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH-hhhh
Confidence 6899999999999887653 21111111100 0125789999999999999999999999999999999998766 6666
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
.. ..++.+|..+.
T Consensus 89 ~~-~~~~~~~~~a~------------------------------------------------------------------ 101 (257)
T 1lv7_A 89 GA-SRVRDMFEQAK------------------------------------------------------------------ 101 (257)
T ss_dssp CH-HHHHHHHHHHH------------------------------------------------------------------
T ss_pred hH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 53 23444433220
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
...+++
T Consensus 102 --------------------------------------------------------------------------~~~~~i 107 (257)
T 1lv7_A 102 --------------------------------------------------------------------------KAAPCI 107 (257)
T ss_dssp --------------------------------------------------------------------------TTCSEE
T ss_pred --------------------------------------------------------------------------HcCCee
Confidence 013579
Q ss_pred eeehhhhhhhccCCCCC-CCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--cCCe
Q psy2392 1021 IFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPI 1097 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~~-~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~i 1097 (1165)
+||||||.+........ +........+..+|..+++.. ...++++|++. +.|..+.|.+.+ ||..
T Consensus 108 l~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~~vI~~t----n~~~~l~~~l~r~~rf~~ 175 (257)
T 1lv7_A 108 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE--------GNEGIIVIAAT----NRPDVLDPALLRPGRFDR 175 (257)
T ss_dssp EEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC--------SSSCEEEEEEE----SCTTTSCGGGGSTTSSCE
T ss_pred ehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc--------cCCCEEEEEee----CCchhCCHHHcCCCcCCe
Confidence 99999999987654321 112222235566777777531 24567788875 467788899986 9999
Q ss_pred EEEcCCCCHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~ 1114 (1165)
.+.+..++.++..+|++
T Consensus 176 ~i~i~~P~~~~r~~il~ 192 (257)
T 1lv7_A 176 QVVVGLPDVRGREQILK 192 (257)
T ss_dssp EEECCCCCHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHH
Confidence 99999999999998887
No 76
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.52 E-value=1.2e-13 Score=157.23 Aligned_cols=157 Identities=16% Similarity=0.206 Sum_probs=99.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee-ecee--ecCceEEEEEeCCcccCCCCCCchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGI--IKTDHILFIASGAFHLAKPSDLIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~-~~~~--~~t~~ilfI~~gaf~~~~p~~l~pel~~ 495 (1165)
.++|+||||||++... +|..|+..+|.+.... ..|. ....++.+|++++. .+..+.|+|++
T Consensus 144 ~~~vl~iDEi~~l~~~-------------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~---~~~~l~~~L~~ 207 (350)
T 1g8p_A 144 NRGYLYIDECNLLEDH-------------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNP---EEGDLRPQLLD 207 (350)
T ss_dssp TTEEEEETTGGGSCHH-------------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECS---CSCCCCHHHHT
T ss_pred CCCEEEEeChhhCCHH-------------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCC---CCCCCCHHHHh
Confidence 4789999999999765 6778999888643221 1111 11236778887542 12469999999
Q ss_pred CCCeeEecCCC-CHHHHHHHHhhhh----------------HhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccC
Q psy2392 496 RFPIRVELDSL-SISDFTRIMTSTN----------------VCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERT 558 (1165)
Q Consensus 496 R~~~~v~~~~L-~~~~l~~Il~~~~----------------~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~ 558 (1165)
||++.+.|.++ +.++..+|+.... ...+...........-.+.+++++++.|++.+...
T Consensus 208 R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~---- 283 (350)
T 1g8p_A 208 RFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIAL---- 283 (350)
T ss_dssp TCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHS----
T ss_pred hcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHh----
Confidence 99999999999 5666667875310 00011111111112224589999999999999874
Q ss_pred Ccc-CcchhHHHHHHHHHHhhcccCCCeeEEccccccccccc
Q psy2392 559 ENI-GARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 559 ~~~-GAR~l~~~ie~~l~~~~~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
+. ++|.+.++++.+..-...+ +. -.|+.+.|++.+..
T Consensus 284 -~~~~~R~~~~ll~~a~~~A~~~--~~-~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 284 -GSDGLRGELTLLRSARALAALE--GA-TAVGRDHLKRVATM 321 (350)
T ss_dssp -SSCSHHHHHHHHHHHHHHHHHT--TC-SBCCHHHHHHHHHH
T ss_pred -CCCCccHHHHHHHHHHHHHHHc--CC-CcCCHHHHHHHHHH
Confidence 44 7899999998765433221 11 23677777665543
No 77
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.52 E-value=1.1e-13 Score=159.11 Aligned_cols=104 Identities=20% Similarity=0.249 Sum_probs=75.4
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
++|+||||||.+... .|..|+.++|...... +.......+.+|++. ..+.|..+.|.|++||.+
T Consensus 190 ~~vl~IDEi~~l~~~-------------~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t--~~~~~~~l~~~l~sR~~~ 253 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIE-------------SFSFLNRALESDMAPV-LIMATNRGITRIRGT--SYQSPHGIPIDLLDRLLI 253 (368)
T ss_dssp BCEEEEESGGGSBHH-------------HHHHHHHHTTCTTCCE-EEEEESCSEEECBTS--SCEEETTCCHHHHTTEEE
T ss_pred CceEEEhhccccChH-------------HHHHHHHHhhCcCCCe-eeeecccceeeeecc--CCCCcccCCHHHHhhccE
Confidence 479999999999754 7889999998754332 111122223333333 233467899999999988
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
+.|++|+.+++.+||+ ..+..+++ .+++++++.|++.+..
T Consensus 254 -i~~~~~~~~e~~~il~-----------~~~~~~~~--~~~~~~l~~l~~~~~~ 293 (368)
T 3uk6_A 254 -VSTTPYSEKDTKQILR-----------IRCEEEDV--EMSEDAYTVLTRIGLE 293 (368)
T ss_dssp -EEECCCCHHHHHHHHH-----------HHHHHTTC--CBCHHHHHHHHHHHHH
T ss_pred -EEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHhcC
Confidence 6999999999999998 22344565 6899999999998873
No 78
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.51 E-value=5.1e-14 Score=168.86 Aligned_cols=235 Identities=23% Similarity=0.357 Sum_probs=148.6
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|+++++..+.+.+.. ++........... .+.+++|+||||||||+||+++|..++.+|+.++++++.+. |+|.
T Consensus 31 ~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~-ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~-~~g~ 107 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEF-LKNPSRFHEMGAR-IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGV 107 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCC-CCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS-CTTH
T ss_pred HHcCCcHHHHHHHHHHHHH-hhchhhhhhccCC-CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh-hhhh
Confidence 4799999999999887653 2232222222111 24679999999999999999999999999999999988653 5543
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. ...++.+|+.+
T Consensus 108 ~-~~~v~~lfq~a------------------------------------------------------------------- 119 (499)
T 2dhr_A 108 G-AARVRDLFETA------------------------------------------------------------------- 119 (499)
T ss_dssp H-HHHHHHHTTTS-------------------------------------------------------------------
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 3 11122222110
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
....++|
T Consensus 120 -------------------------------------------------------------------------~~~~p~i 126 (499)
T 2dhr_A 120 -------------------------------------------------------------------------KRHAPCI 126 (499)
T ss_dssp -------------------------------------------------------------------------SSSSSCE
T ss_pred -------------------------------------------------------------------------HhcCCCE
Confidence 0013689
Q ss_pred EEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--CCCe
Q psy2392 423 IFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPI 499 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~--R~~~ 499 (1165)
+||||||.+........ +.....+...+.||..++|.. ....+++|++. +.|..+.|+|++ ||+.
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~--------~~~~viviAat----n~p~~LD~aLlr~gRfdr 194 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE--------KDTAIVVMAAT----NRPDILDPALLRPGRFDR 194 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC--------SSCCCEEEECC----SCGGGSCTTTSSTTSSCC
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc--------cCccEEEEEec----CChhhcCcccccccccce
Confidence 99999999987654311 112223345567787777643 23456677774 567779999985 9999
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHH-HHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDG-IQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a-~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.|.|..++.++..+||+. . ..++ .+++++ +..|+... +.+-+|-|.++++++.....
T Consensus 195 ~i~i~~Pd~~~R~~IL~~----~---------~~~~--~l~~dv~l~~lA~~t-------~G~~gadL~~lv~~Aa~~A~ 252 (499)
T 2dhr_A 195 QIAIDAPDVKGREQILRI----H---------ARGK--PLAEDVDLALLAKRT-------PGFVGADLENLLNEAALLAA 252 (499)
T ss_dssp EEECCCCCHHHHHHHHHH----T---------TSSS--CCCCSSTTHHHHTTS-------CSCCHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCHHHHHHHHHH----H---------HhcC--CCChHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999841 1 1233 333333 45554433 33445788888887654332
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
.. ....|+.+.+.+.+.
T Consensus 253 ~~---~~~~It~~dl~~al~ 269 (499)
T 2dhr_A 253 RE---GRRKITMKDLEEAAD 269 (499)
T ss_dssp TT---CCSSCCSHHHHHHHH
T ss_pred Hh---CCCccCHHHHHHHHH
Confidence 11 112356555555444
No 79
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.50 E-value=1.3e-14 Score=159.85 Aligned_cols=174 Identities=28% Similarity=0.459 Sum_probs=119.2
Q ss_pred hcccchHHHHHHHHHHHHhH-----hhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNR-----WRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEV 855 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~-----~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~ 855 (1165)
++|+|++.+++.+...+... +...+.. .+.++||+||||||||++|+++|+.++.+|+.++++.+.+.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAK-------IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCC-------CCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCC-------CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 68999999999998876531 1111111 14679999999999999999999999999999999887665
Q ss_pred cccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCC
Q psy2392 856 GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGA 935 (1165)
Q Consensus 856 GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ 935 (1165)
|.|.... .++.+|..
T Consensus 84 -~~~~~~~-~~~~~~~~--------------------------------------------------------------- 98 (268)
T 2r62_A 84 -FVGLGAS-RVRDLFET--------------------------------------------------------------- 98 (268)
T ss_dssp -CSSSCSS-SSSTTHHH---------------------------------------------------------------
T ss_pred -hcchHHH-HHHHHHHH---------------------------------------------------------------
Confidence 5554421 11111111
Q ss_pred CCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q psy2392 936 LDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNV 1015 (1165)
Q Consensus 936 ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~ 1015 (1165)
|..
T Consensus 99 ---------------------------------------------------------------------------a~~-- 101 (268)
T 2r62_A 99 ---------------------------------------------------------------------------AKK-- 101 (268)
T ss_dssp ---------------------------------------------------------------------------HHH--
T ss_pred ---------------------------------------------------------------------------HHh--
Confidence 110
Q ss_pred hcCCeeeehhhhhhhccCCCC--CCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc
Q psy2392 1016 EQNGIIFLDEIDKITTRSSQN--NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG 1093 (1165)
Q Consensus 1016 ~~~gIvfiDEiDki~~~~~~~--~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g 1093 (1165)
..++|+||||||.+....... .+.+......+..||..+++.. -...++++|++. +.|..+.|.+++
T Consensus 102 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~v~vi~tt----n~~~~ld~~l~r 170 (268)
T 2r62_A 102 QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG-------SENAPVIVLAAT----NRPEILDPALMR 170 (268)
T ss_dssp SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS-------CSCSCCEEEECB----SCCTTSCGGGGS
T ss_pred cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc-------cCCCCEEEEEec----CCchhcCHhHcC
Confidence 146899999999998764221 1122233346778888888632 123457777775 366778889987
Q ss_pred --cCCeEEEcCCCCHHHHHHHHh
Q psy2392 1094 --RFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1094 --R~~i~v~l~~l~~~~l~~il~ 1114 (1165)
||...+.|++++.++..+|++
T Consensus 171 ~~Rf~~~i~i~~p~~~~r~~il~ 193 (268)
T 2r62_A 171 PGRFDRQVLVDKPDFNGRVEILK 193 (268)
T ss_dssp SSSSCCCCBCCCCCTTTHHHHHH
T ss_pred CCCCCeEEEecCcCHHHHHHHHH
Confidence 999999999999999999987
No 80
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.50 E-value=3.9e-14 Score=160.61 Aligned_cols=149 Identities=11% Similarity=0.106 Sum_probs=97.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCC-CCchhhhCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS-DLIPELQGRF 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~-~l~pel~~R~ 497 (1165)
...||||||||.+. . |+.|+++++= ......++.+|+.++-. ..|. .+.|.+++||
T Consensus 132 ~~~ii~lDE~d~l~--~-------------q~~L~~l~~~-------~~~~~s~~~vI~i~n~~-d~~~~~L~~~v~SR~ 188 (318)
T 3te6_A 132 RKTLILIQNPENLL--S-------------EKILQYFEKW-------ISSKNSKLSIICVGGHN-VTIREQINIMPSLKA 188 (318)
T ss_dssp CEEEEEEECCSSSC--C-------------THHHHHHHHH-------HHCSSCCEEEEEECCSS-CCCHHHHHTCHHHHT
T ss_pred CceEEEEecHHHhh--c-------------chHHHHHHhc-------ccccCCcEEEEEEecCc-ccchhhcchhhhccC
Confidence 46799999999998 2 2355555541 01234577888887632 3343 3567788999
Q ss_pred C-eeEecCCCCHHHHHHHHhhhhHhHHHHHHH-HH-------------------------hhcCCeeEeCHHHHHHHHHH
Q psy2392 498 P-IRVELDSLSISDFTRIMTSTNVCLTKQYEA-LL-------------------------ATEGIKIEFVDDGIQRLAEI 550 (1165)
Q Consensus 498 ~-~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~-ll-------------------------~~~~i~l~~~~~a~~~la~~ 550 (1165)
. .++.|+|++.+++.+||+ + .+..... .+ ...++.+.++++|++.+|+.
T Consensus 189 ~~~~i~F~pYt~~el~~Il~---~-Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~ 264 (318)
T 3te6_A 189 HFTEIKLNKVDKNELQQMII---T-RLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKN 264 (318)
T ss_dssp TEEEEECCCCCHHHHHHHHH---H-HHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHH
T ss_pred CceEEEeCCCCHHHHHHHHH---H-HHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHH
Confidence 6 578999999999999995 1 1111100 00 00013457899999999998
Q ss_pred HHhccccCCccCcchhHHHHHHHHHHhhccc------CCCeeEEccccccccccc
Q psy2392 551 AYCINERTENIGARRLYTAMEKLLEEVSFNS------NNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 551 a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~------~~~~~~i~~~~v~~~~~~ 599 (1165)
+... +++||+...++++.++-..-+. .+...+||.+.+.+..++
T Consensus 265 vA~~-----~GD~R~Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~ 314 (318)
T 3te6_A 265 VANV-----SGSTEKAFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFSE 314 (318)
T ss_dssp HHHH-----HCSHHHHHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHHH
T ss_pred HHhh-----CChHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHHH
Confidence 7663 7899999999999887553321 122267777777665543
No 81
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.49 E-value=2.6e-14 Score=161.82 Aligned_cols=100 Identities=20% Similarity=0.352 Sum_probs=79.0
Q ss_pred cCCeeeehhhhhhh-ccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccC
Q psy2392 1017 QNGIIFLDEIDKIT-TRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF 1095 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~-~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~ 1095 (1165)
..+|+||||||.+. .. .|..|+.++|... .++.||+++ +.+..+.|.|.+||
T Consensus 105 ~~~vliiDEi~~l~~~~-------------~~~~L~~~le~~~----------~~~~iI~~~----n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAE-------------SQRHLRSFMEAYS----------SNCSIIITA----NNIDGIIKPLQSRC 157 (324)
T ss_dssp CEEEEEEESCCCGGGHH-------------HHHHHHHHHHHHG----------GGCEEEEEE----SSGGGSCTTHHHHS
T ss_pred CCeEEEEECCcccCcHH-------------HHHHHHHHHHhCC----------CCcEEEEEe----CCccccCHHHHhhC
Confidence 35799999999997 43 7889999998532 345566654 35667999999999
Q ss_pred CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCH-HHHHHHHHHHh
Q psy2392 1096 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVD-DGIQRLAEIAY 1150 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~-~ai~~ia~~a~ 1150 (1165)
.+ ++|++++.++..+|+. .+.......+..+|+ .+++ ++++.|++.+.
T Consensus 158 ~~-i~~~~~~~~e~~~il~----~~~~~l~~~~~~~~~--~~~~~~~~~~l~~~~~ 206 (324)
T 3u61_B 158 RV-ITFGQPTDEDKIEMMK----QMIRRLTEICKHEGI--AIADMKVVAALVKKNF 206 (324)
T ss_dssp EE-EECCCCCHHHHHHHHH----HHHHHHHHHHHHHTC--CBSCHHHHHHHHHHTC
T ss_pred cE-EEeCCCCHHHHHHHHH----HHHHHHHHHHHHcCC--CCCcHHHHHHHHHhCC
Confidence 74 8999999999999888 566666777788888 6778 99999998753
No 82
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.49 E-value=7.8e-14 Score=155.32 Aligned_cols=181 Identities=22% Similarity=0.357 Sum_probs=119.6
Q ss_pred HHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccc
Q psy2392 777 SELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVG 856 (1165)
Q Consensus 777 ~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~G 856 (1165)
..-|++|+|.+++++.|.+.+..++........... ..+++++|+||||||||+|++++|..++.+++.++++++.+.
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l-~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~- 83 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGL-VTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM- 83 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTC-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS-
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC-CCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh-
Confidence 344689999999999999988765543322111110 114679999999999999999999999999999999988765
Q ss_pred ccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCC
Q psy2392 857 YVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGAL 936 (1165)
Q Consensus 857 yvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~l 936 (1165)
|+|.. +..++.+|..+.
T Consensus 84 ~~~~~-~~~i~~vf~~a~-------------------------------------------------------------- 100 (274)
T 2x8a_A 84 YVGES-ERAVRQVFQRAK-------------------------------------------------------------- 100 (274)
T ss_dssp TTHHH-HHHHHHHHHHHH--------------------------------------------------------------
T ss_pred hhhHH-HHHHHHHHHHHH--------------------------------------------------------------
Confidence 66544 223444433220
Q ss_pred CCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhh
Q psy2392 937 DNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVE 1016 (1165)
Q Consensus 937 d~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~ 1016 (1165)
..
T Consensus 101 ------------------------------------------------------------------------------~~ 102 (274)
T 2x8a_A 101 ------------------------------------------------------------------------------NS 102 (274)
T ss_dssp ------------------------------------------------------------------------------HT
T ss_pred ------------------------------------------------------------------------------hc
Confidence 01
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--c
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--R 1094 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R 1094 (1165)
.++|+|+||||.++...... ..+. ...+.+.++..+.|. .....++++++. ++|..+.|+|++ |
T Consensus 103 ~p~i~~~Deid~~~~~r~~~-~~~~-~~~~~~~~l~~Lsgg--------~~~~~~i~ia~t----n~p~~LD~al~r~gR 168 (274)
T 2x8a_A 103 APCVIFFDEVDALCPRRSDR-ETGA-SVRVVNQLLTEMDGL--------EARQQVFIMAAT----NRPDIIDPAILRPGR 168 (274)
T ss_dssp CSEEEEEETCTTTCC-----------CTTHHHHHHHHHHTC--------CSTTCEEEEEEE----SCGGGSCHHHHSTTS
T ss_pred CCCeEeeehhhhhhcccCCC-cchH-HHHHHHHHHHhhhcc--------cccCCEEEEeec----CChhhCCHhhcCccc
Confidence 45799999999987653221 1111 112444555556553 233445666664 588889999985 9
Q ss_pred CCeEEEcCCCCHHHHHHHHh
Q psy2392 1095 FPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1095 ~~i~v~l~~l~~~~l~~il~ 1114 (1165)
|...+.++.++.++..+||+
T Consensus 169 fd~~i~~~~P~~~~r~~il~ 188 (274)
T 2x8a_A 169 LDKTLFVGLPPPADRLAILK 188 (274)
T ss_dssp SCEEEECCSCCHHHHHHHHH
T ss_pred CCeEEEeCCcCHHHHHHHHH
Confidence 99999999999999999997
No 83
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.48 E-value=1e-13 Score=154.48 Aligned_cols=178 Identities=22% Similarity=0.373 Sum_probs=120.3
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG 261 (1165)
.++|.|.+++++.+.+.+..+++...+....... .+.+++|+||||||||+|++++|..++.+++.++..++.+. |+|
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~-~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~-~~~ 86 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLV-TPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM-YVG 86 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS-TTH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCC-CCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh-hhh
Confidence 4589999999999999887665554332221111 23569999999999999999999999999999999887653 554
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCc
Q psy2392 262 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 341 (1165)
Q Consensus 262 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 341 (1165)
.. ...+..+|+.+
T Consensus 87 ~~-~~~i~~vf~~a------------------------------------------------------------------ 99 (274)
T 2x8a_A 87 ES-ERAVRQVFQRA------------------------------------------------------------------ 99 (274)
T ss_dssp HH-HHHHHHHHHHH------------------------------------------------------------------
T ss_pred HH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 33 22233333220
Q ss_pred EEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccce
Q psy2392 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 421 (1165)
Q Consensus 342 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 421 (1165)
.. ..++
T Consensus 100 ------------------------------------------------------------------------~~--~~p~ 105 (274)
T 2x8a_A 100 ------------------------------------------------------------------------KN--SAPC 105 (274)
T ss_dssp ------------------------------------------------------------------------HH--TCSE
T ss_pred ------------------------------------------------------------------------Hh--cCCC
Confidence 00 1478
Q ss_pred EEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--CCCe
Q psy2392 422 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPI 499 (1165)
Q Consensus 422 IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~--R~~~ 499 (1165)
|+|+||||.+...+.... .+. ...+.+.++..++|+. ....++++++ +++|..++|+|+. ||+.
T Consensus 106 i~~~Deid~~~~~r~~~~-~~~-~~~~~~~~l~~Lsgg~--------~~~~~i~ia~----tn~p~~LD~al~r~gRfd~ 171 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRE-TGA-SVRVVNQLLTEMDGLE--------ARQQVFIMAA----TNRPDIIDPAILRPGRLDK 171 (274)
T ss_dssp EEEEETCTTTCC-----------CTTHHHHHHHHHHTCC--------STTCEEEEEE----ESCGGGSCHHHHSTTSSCE
T ss_pred eEeeehhhhhhcccCCCc-chH-HHHHHHHHHHhhhccc--------ccCCEEEEee----cCChhhCCHhhcCcccCCe
Confidence 999999999876533211 111 1234556777777642 2345566666 3688899999985 9999
Q ss_pred eEecCCCCHHHHHHHHh
Q psy2392 500 RVELDSLSISDFTRIMT 516 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~ 516 (1165)
.|.+..++.++..+|++
T Consensus 172 ~i~~~~P~~~~r~~il~ 188 (274)
T 2x8a_A 172 TLFVGLPPPADRLAILK 188 (274)
T ss_dssp EEECCSCCHHHHHHHHH
T ss_pred EEEeCCcCHHHHHHHHH
Confidence 99999999999999994
No 84
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.48 E-value=1.4e-13 Score=152.27 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=80.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCch-hhhCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIP-ELQGRF 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~p-el~~R~ 497 (1165)
+++||||||||++...... +.. ....+++.|+.++++.. ....++++|++. +.|..+.+ .+.+||
T Consensus 124 ~~~vl~iDEid~l~~~~~~--~~~-~~~~~l~~L~~~~~~~~-------~~~~~~~ii~tt----n~~~~l~~~~l~~rf 189 (272)
T 1d2n_A 124 QLSCVVVDDIERLLDYVPI--GPR-FSNLVLQALLVLLKKAP-------PQGRKLLIIGTT----SRKDVLQEMEMLNAF 189 (272)
T ss_dssp SEEEEEECCHHHHTTCBTT--TTB-CCHHHHHHHHHHTTCCC-------STTCEEEEEEEE----SCHHHHHHTTCTTTS
T ss_pred CCcEEEEEChhhhhccCCC--Chh-HHHHHHHHHHHHhcCcc-------CCCCCEEEEEec----CChhhcchhhhhccc
Confidence 4789999999999755322 111 12345667777776521 123467777774 34444555 678999
Q ss_pred CeeEecCCCCH-HHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 498 PIRVELDSLSI-SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 498 ~~~v~~~~L~~-~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
..++.|++|+. +++.+++.. . ..+++++++.|++.+..+. -.+++|.+.++++.+.
T Consensus 190 ~~~i~~p~l~~r~~i~~i~~~--------------~----~~~~~~~~~~l~~~~~g~~---~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 190 STTIHVPNIATGEQLLEALEL--------------L----GNFKDKERTTIAQQVKGKK---VWIGIKKLLMLIEMSL 246 (272)
T ss_dssp SEEEECCCEEEHHHHHHHHHH--------------H----TCSCHHHHHHHHHHHTTSE---EEECHHHHHHHHHHHT
T ss_pred ceEEcCCCccHHHHHHHHHHh--------------c----CCCCHHHHHHHHHHhcCCC---ccccHHHHHHHHHHHh
Confidence 99999999988 777776631 1 1468999999998874310 1237999999988764
No 85
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.48 E-value=1.4e-13 Score=156.34 Aligned_cols=117 Identities=15% Similarity=0.179 Sum_probs=76.5
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeec-cCceEEEEecCCCCC-CCCCCCchhhhccC
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII-KTDHILFIASGAFHL-AKPSDLIPELQGRF 1095 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~-~t~~ilfI~~gaf~~-~~p~dl~pel~gR~ 1095 (1165)
.+|+||||||++... +|..|+..+|...+...-... ...++.+|++..-.. .....+.|.|++||
T Consensus 110 ~~vl~iDEi~~~~~~-------------~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf 176 (331)
T 2r44_A 110 SNFILADEVNRSPAK-------------VQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRF 176 (331)
T ss_dssp SSEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTS
T ss_pred ccEEEEEccccCCHH-------------HHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhhe
Confidence 479999999998654 889999999876655411111 122455665533100 01113889999999
Q ss_pred CeEEEcCCCCHHHHHHHHhhhHHH-------------hHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1096 PIRVELDSLSISDFTRIMTSTNVC-------------LTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~~~~~~-------------l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
.+++.+++++.++..+||+.--.. -+....... .+ +.+++++++.|+.++..
T Consensus 177 ~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~--v~~~~~~~~~i~~~~~~ 241 (331)
T 2r44_A 177 MMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEI--NK--VTISESLEKYIIELVFA 241 (331)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHH--HT--CBCCHHHHHHHHHHHHH
T ss_pred eEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHh--cc--CCCCHHHHHHHHHHHHH
Confidence 999999999999999999732110 011111221 24 47899999999987753
No 86
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.47 E-value=5.3e-13 Score=150.48 Aligned_cols=118 Identities=14% Similarity=0.261 Sum_probs=84.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeec--------eeecCceEEEEEeCCcccCCCCCCc
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY--------GIIKTDHILFIASGAFHLAKPSDLI 490 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~--------~~~~t~~ilfI~~gaf~~~~p~~l~ 490 (1165)
.+++|||||||.+... .|..|+..++...+..-. ......++.+|+++ +.+..+.
T Consensus 90 ~~~~l~lDEi~~l~~~-------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t----~~~~~~~ 152 (324)
T 1hqc_A 90 EGDILFIDEIHRLSRQ-------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT----TRPGLIT 152 (324)
T ss_dssp TTCEEEETTTTSCCHH-------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEE----SCCSSCS
T ss_pred CCCEEEEECCcccccc-------------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeC----CCcccCC
Confidence 4689999999998754 566888888765432100 01122356778774 4566789
Q ss_pred hhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 491 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 491 pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
|.|.+||+..+.|.+|+.+++.+++. ..+...+ +.+++++++.|+..+ .+..|.+.+++
T Consensus 153 ~~l~~R~~~~i~l~~~~~~e~~~~l~-----------~~~~~~~--~~~~~~~~~~l~~~~--------~G~~r~l~~~l 211 (324)
T 1hqc_A 153 APLLSRFGIVEHLEYYTPEELAQGVM-----------RDARLLG--VRITEEAALEIGRRS--------RGTMRVAKRLF 211 (324)
T ss_dssp CSTTTTCSCEEECCCCCHHHHHHHHH-----------HHHHTTT--CCCCHHHHHHHHHHS--------CSCHHHHHHHH
T ss_pred HHHHhcccEEEecCCCCHHHHHHHHH-----------HHHHhcC--CCCCHHHHHHHHHHc--------cCCHHHHHHHH
Confidence 99999998889999999999988874 1223334 468999999998875 35568888888
Q ss_pred HHHH
Q psy2392 571 EKLL 574 (1165)
Q Consensus 571 e~~l 574 (1165)
+++.
T Consensus 212 ~~~~ 215 (324)
T 1hqc_A 212 RRVR 215 (324)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7764
No 87
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.46 E-value=3.4e-13 Score=147.44 Aligned_cols=125 Identities=21% Similarity=0.298 Sum_probs=77.7
Q ss_pred cceEEEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--
Q psy2392 419 QNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG-- 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~-- 495 (1165)
.++++||||||.+........ ............++..++|.. ....++++++ +++|..+.|++++
T Consensus 108 ~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~--------~~~~~i~~a~----t~~p~~ld~~l~r~~ 175 (254)
T 1ixz_A 108 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE--------KDTAIVVMAA----TNRPDILDPALLRPG 175 (254)
T ss_dssp SSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC--------TTCCEEEEEE----ESCGGGSCGGGGSTT
T ss_pred CCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC--------CCCCEEEEEc----cCCchhCCHHHcCCC
Confidence 368999999999986643211 111122334556777777642 2234555555 3678889999986
Q ss_pred CCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHH-HHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 496 RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDG-IQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 496 R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a-~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
||+..+.|..++.++..+|++ .. . .+. .+++++ +..|+... +++-+|-|.++++++.
T Consensus 176 rf~~~i~i~~p~~~~r~~il~----~~-------~--~~~--~~~~~~~~~~la~~~-------~G~~~~dl~~~~~~a~ 233 (254)
T 1ixz_A 176 RFDRQIAIDAPDVKGREQILR----IH-------A--RGK--PLAEDVDLALLAKRT-------PGFVGADLENLLNEAA 233 (254)
T ss_dssp SSCEEEECCSCCHHHHHHHHH----HH-------H--TTS--CBCTTCCHHHHHHTC-------TTCCHHHHHHHHHHHH
T ss_pred cCCeEEeeCCcCHHHHHHHHH----HH-------H--cCC--CCCcccCHHHHHHHc-------CCCCHHHHHHHHHHHH
Confidence 999999999999999999984 11 1 233 233333 55665544 2344578888888776
Q ss_pred HHh
Q psy2392 575 EEV 577 (1165)
Q Consensus 575 ~~~ 577 (1165)
...
T Consensus 234 ~~a 236 (254)
T 1ixz_A 234 LLA 236 (254)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 88
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.46 E-value=1.1e-13 Score=152.38 Aligned_cols=129 Identities=19% Similarity=0.247 Sum_probs=87.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeecee--ecCceEEEEEeCCcccC---CCCCCchhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI--IKTDHILFIASGAFHLA---KPSDLIPEL 493 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~--~~t~~ilfI~~gaf~~~---~p~~l~pel 493 (1165)
.+++|||||||++... +|..|+.+++...+. +.|. ....++.+|++++.... ....|.|.|
T Consensus 100 ~~~~l~lDEi~~l~~~-------------~q~~Ll~~l~~~~~~-~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L 165 (265)
T 2bjv_A 100 DGGTLFLDELATAPMM-------------VQEKLLRVIEYGELE-RVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADL 165 (265)
T ss_dssp TTSEEEEESGGGSCHH-------------HHHHHHHHHHHCEEC-CCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHH
T ss_pred CCcEEEEechHhcCHH-------------HHHHHHHHHHhCCee-cCCCcccccCCeEEEEecCcCHHHHHHcCCccHHH
Confidence 4789999999999764 777899999865432 1111 11235667777543210 012478999
Q ss_pred hCCCC-eeEecCCCCH--HHHHHHHhhhhHhHHHHHHHHHhhcCCee--EeCHHHHHHHHHHHHhccccCCccCcchhHH
Q psy2392 494 QGRFP-IRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKI--EFVDDGIQRLAEIAYCINERTENIGARRLYT 568 (1165)
Q Consensus 494 ~~R~~-~~v~~~~L~~--~~l~~Il~~~~~~l~~~~~~ll~~~~i~l--~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~ 568 (1165)
.+||. +.+.+++|.. +|+..++. ..+.+.. ...+..+ .+++++++.|....+ .++.|.|++
T Consensus 166 ~~Rl~~~~i~lp~L~~R~~di~~l~~----~~l~~~~---~~~~~~~~~~~~~~a~~~L~~~~~-------~gn~reL~~ 231 (265)
T 2bjv_A 166 LDALAFDVVQLPPLRERESDIMLMAE----YFAIQMC---REIKLPLFPGFTERARETLLNYRW-------PGNIRELKN 231 (265)
T ss_dssp HHHHCSEEEECCCGGGCHHHHHHHHH----HHHHHHH---HHTTCSSCCCBCHHHHHHHHHSCC-------TTHHHHHHH
T ss_pred HHhhcCcEEeCCChhhhhHHHHHHHH----HHHHHHH---HHhCCCcccCcCHHHHHHHHhCCC-------CCCHHHHHH
Confidence 99995 6789999987 77777763 3333322 3345544 799999999986543 367899999
Q ss_pred HHHHHHH
Q psy2392 569 AMEKLLE 575 (1165)
Q Consensus 569 ~ie~~l~ 575 (1165)
++++++.
T Consensus 232 ~l~~~~~ 238 (265)
T 2bjv_A 232 VVERSVY 238 (265)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999864
No 89
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.45 E-value=1.5e-13 Score=154.93 Aligned_cols=103 Identities=17% Similarity=0.346 Sum_probs=76.1
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee--------eccCceEEEEecCCCCCCCCCCCc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG--------IIKTDHILFIASGAFHLAKPSDLI 1088 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~--------~~~t~~ilfI~~gaf~~~~p~dl~ 1088 (1165)
..+++||||||.+... .|..|+.+++...+..-.+ .....++.+|+++. .+..+.
T Consensus 90 ~~~~l~lDEi~~l~~~-------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~----~~~~~~ 152 (324)
T 1hqc_A 90 EGDILFIDEIHRLSRQ-------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT----RPGLIT 152 (324)
T ss_dssp TTCEEEETTTTSCCHH-------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEES----CCSSCS
T ss_pred CCCEEEEECCcccccc-------------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCC----CcccCC
Confidence 5689999999998754 7888999888654321000 11223577888754 566788
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1089 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1089 pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
+.|.+||...+.|.+++.+|+..++. ..+...|+ .+++++++.|+..+
T Consensus 153 ~~l~~R~~~~i~l~~~~~~e~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~ 200 (324)
T 1hqc_A 153 APLLSRFGIVEHLEYYTPEELAQGVM-----------RDARLLGV--RITEEAALEIGRRS 200 (324)
T ss_dssp CSTTTTCSCEEECCCCCHHHHHHHHH-----------HHHHTTTC--CCCHHHHHHHHHHS
T ss_pred HHHHhcccEEEecCCCCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHHc
Confidence 99999998889999999999988887 23344454 68899999998875
No 90
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.45 E-value=1.2e-12 Score=137.56 Aligned_cols=123 Identities=24% Similarity=0.296 Sum_probs=88.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+++|||||+|.+... .+..|+.+++.. ..++.+|+++ +.+..+.|.|.+|+.
T Consensus 102 ~~~vliiDe~~~l~~~-------------~~~~l~~~l~~~----------~~~~~~i~~~----~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 102 PFKIIFLDEADALTAD-------------AQAALRRTMEMY----------SKSCRFILSC----NYVSRIIEPIQSRCA 154 (226)
T ss_dssp SCEEEEEETGGGSCHH-------------HHHHHHHHHHHT----------TTTEEEEEEE----SCGGGSCHHHHTTSE
T ss_pred CceEEEEeChhhcCHH-------------HHHHHHHHHHhc----------CCCCeEEEEe----CChhhcCHHHHHhCc
Confidence 4789999999998754 455788777642 2344555553 345678899999998
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.+.|.+|+.+++.+++. ..+...|+ .+++++++.|++.+ ++..|.+.++++++....
T Consensus 155 -~i~~~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~--------~g~~r~l~~~l~~~~~~~- 211 (226)
T 2chg_A 155 -VFRFKPVPKEAMKKRLL-----------EICEKEGV--KITEDGLEALIYIS--------GGDFRKAINALQGAAAIG- 211 (226)
T ss_dssp -EEECCCCCHHHHHHHHH-----------HHHHHHTC--CBCHHHHHHHHHHH--------TTCHHHHHHHHHHHHHTC-
T ss_pred -eeecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHhcC-
Confidence 78999999999998884 12233354 48899999998766 467888999988876421
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
-.||.+.|++.++
T Consensus 212 -------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 -------EVVDADTIYQITA 224 (226)
T ss_dssp -------SCBCHHHHHHHHH
T ss_pred -------ceecHHHHHHHhc
Confidence 1377777766543
No 91
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.44 E-value=3.6e-14 Score=169.58 Aligned_cols=123 Identities=20% Similarity=0.280 Sum_probs=100.8
Q ss_pred cccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHHHHhh----
Q psy2392 16 EKFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG---- 89 (1165)
Q Consensus 16 ~~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~~h~---- 89 (1165)
+.+|+.|+| +|++|+++||||||+.+|+++++.|++|.|| |+ .| .|++|+.+++..||+++..+|+.||+
T Consensus 275 ~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~R--f~-~i-~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~ 350 (468)
T 3pxg_A 275 AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERR--FQ-PI-QVDQPSVDESIQILQGLRDRYEAHHRVSIT 350 (468)
T ss_dssp C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHS--EE-EE-ECCCCCHHHHHHHHHHTTTTSGGGSSCSCC
T ss_pred CchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHh--Cc-cc-eeCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 456888988 9999999999999999999999999999999 99 45 59999999999999999999999998
Q ss_pred -HHHHHHHHHHHhhcCCCCchhH--HHHHhhhhhhhhhhccCCCCccCcccccccc
Q psy2392 90 -NLMRASVELAKEWRNDRTLRRL--EAMLLTANRETTLIITGNGDVLEPENGIGAI 142 (1165)
Q Consensus 90 -~al~~~v~ls~rYi~~r~lPDk--alld~a~a~~~~~~~~~~~~~~~~e~~~~~~ 142 (1165)
+++.+++.++++|++++++||+ +++|.+|++.+....+.+.+...+++.+..+
T Consensus 351 ~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 351 DDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp HHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 9999999999999999999997 4589999988876555555555555555444
No 92
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.43 E-value=3.5e-13 Score=153.53 Aligned_cols=121 Identities=17% Similarity=0.252 Sum_probs=79.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccce-eeeeec--cCceEEEEecCCCCCCCCCCCchhhhc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN-TKYGII--KTDHILFIASGAFHLAKPSDLIPELQG 1093 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~-~k~~~~--~t~~ilfI~~gaf~~~~p~dl~pel~g 1093 (1165)
..||+||||||++... +|..|+.++|..... ++.|.. ...++.+|+++.- .+..+.|.|.+
T Consensus 144 ~~~vl~iDEi~~l~~~-------------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~---~~~~l~~~L~~ 207 (350)
T 1g8p_A 144 NRGYLYIDECNLLEDH-------------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNP---EEGDLRPQLLD 207 (350)
T ss_dssp TTEEEEETTGGGSCHH-------------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECS---CSCCCCHHHHT
T ss_pred CCCEEEEeChhhCCHH-------------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCC---CCCCCCHHHHh
Confidence 5789999999999765 888999999864322 122211 1236788887652 23468999999
Q ss_pred cCCeEEEcCCC-CHHHHHHHHhhh----------------HHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccC
Q psy2392 1094 RFPIRVELDSL-SISDFTRIMTST----------------NVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCIN 1153 (1165)
Q Consensus 1094 R~~i~v~l~~l-~~~~l~~il~~~----------------~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~ 1153 (1165)
||.++++|+++ ..++..+|+..- +...+..+........-.+.+++++++.|+..+...|
T Consensus 208 R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~ 284 (350)
T 1g8p_A 208 RFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALG 284 (350)
T ss_dssp TCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSS
T ss_pred hcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhC
Confidence 99999999999 566666887631 0011111111111222234899999999999998763
No 93
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.43 E-value=1.1e-12 Score=147.39 Aligned_cols=107 Identities=27% Similarity=0.377 Sum_probs=81.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.++||||||+|.+.+. .|+.|+..+|.. ..++.||+++ +.+..+.|.+.+|+.
T Consensus 110 ~~~vliiDe~~~l~~~-------------~~~~L~~~le~~----------~~~~~~i~~~----~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 110 SFKIIFLDEADALTQD-------------AQQALRRTMEMF----------SSNVRFILSC----NYSSKIIEPIQSRCA 162 (327)
T ss_dssp SCEEEEEETGGGSCHH-------------HHHHHHHHHHHT----------TTTEEEEEEE----SCGGGSCHHHHHTEE
T ss_pred CCeEEEEeCCCcCCHH-------------HHHHHHHHHHhc----------CCCCeEEEEe----CCccccCHHHHhhCc
Confidence 4789999999999754 566899888742 2345566653 356678999999998
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
.+.|.+|+.+++.+++. ..+..+|+ .+++++++.|++.+ +++.|.+.+.++++.
T Consensus 163 -~~~~~~l~~~~~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~--------~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 163 -IFRFRPLRDEDIAKRLR-----------YIAENEGL--ELTEEGLQAILYIA--------EGDMRRAINILQAAA 216 (327)
T ss_dssp -EEECCCCCHHHHHHHHH-----------HHHHTTTC--EECHHHHHHHHHHH--------TTCHHHHHHHHHHHH
T ss_pred -EEEecCCCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHHC--------CCCHHHHHHHHHHHH
Confidence 57999999999998884 22334555 68999999999877 467888888887664
No 94
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.42 E-value=7.7e-13 Score=148.18 Aligned_cols=107 Identities=24% Similarity=0.325 Sum_probs=81.9
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.++||||||+|.+.+. .|+.|+.++|.. ..++.||+++ +.+..+.|.|.+|+.
T Consensus 102 ~~~vliiDe~~~l~~~-------------~~~~L~~~le~~----------~~~~~~i~~~----~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 102 PFKIIFLDEADALTAD-------------AQAALRRTMEMY----------SKSCRFILSC----NYVSRIIEPIQSRCA 154 (319)
T ss_dssp CCEEEEEETGGGSCHH-------------HHHTTGGGTSSS----------SSSEEEEEEE----SCGGGSCHHHHTTCE
T ss_pred CceEEEEeCCCcCCHH-------------HHHHHHHHHHhc----------CCCCeEEEEe----CChhhcchHHHhhCe
Confidence 4789999999999754 566899999852 3455566664 356678999999997
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
.+.|.+++.+++.+++. ..+..+|+ .+++++++.|+..+ ++..|.+.+.++++.
T Consensus 155 -~i~~~~~~~~~~~~~l~-----------~~~~~~~~--~i~~~~l~~l~~~~--------~G~~r~~~~~l~~~~ 208 (319)
T 2chq_A 155 -VFRFKPVPKEAMKKRLL-----------EICEKEGV--KITEDGLEALIYIS--------GGDFRKAINALQGAA 208 (319)
T ss_dssp -EEECCCCCHHHHHHHHH-----------HHHHTTCC--CBCHHHHHHHHHTT--------TTCHHHHHHHHHHHH
T ss_pred -EEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHH
Confidence 68999999999988883 22344555 68899999998654 567888888888764
No 95
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.41 E-value=4.4e-13 Score=148.23 Aligned_cols=72 Identities=25% Similarity=0.237 Sum_probs=50.6
Q ss_pred HHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCC
Q psy2392 776 VSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 851 (1165)
Q Consensus 776 ~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se 851 (1165)
...+...++|+..+.+.+.............. .. ..+.++||+||||||||++|+++|+.++.+|+.+++++
T Consensus 28 ~~~~~~~~i~~~~~~~~i~~~~~~l~~~l~~~-~~---~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~ 99 (272)
T 1d2n_A 28 ASYIMNGIIKWGDPVTRVLDDGELLVQQTKNS-DR---TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD 99 (272)
T ss_dssp TTTCTTCCCCCSHHHHHHHHHHHHHHHHHHHC-SS---CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHhcc-CC---CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH
Confidence 33445678899888777766422111111100 01 12589999999999999999999999999999998876
No 96
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.41 E-value=2.5e-12 Score=146.92 Aligned_cols=140 Identities=17% Similarity=0.270 Sum_probs=92.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee--------eceeecCceEEEEEeCCcccCCCCCCc
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT--------KYGIIKTDHILFIASGAFHLAKPSDLI 490 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~--------~~~~~~t~~ilfI~~gaf~~~~p~~l~ 490 (1165)
...|+||||+|.+.+. ++..|++.++...... +........+.+|++ ++.|..+.
T Consensus 102 ~~~v~~iDE~~~l~~~-------------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~a----t~~~~~Ls 164 (334)
T 1in4_A 102 RGDVLFIDEIHRLNKA-------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGA----TTRSGLLS 164 (334)
T ss_dssp TTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCCCC---------------CCCEEEEE----ESCGGGSC
T ss_pred CCCEEEEcchhhcCHH-------------HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEe----cCCcccCC
Confidence 3579999999998753 5556776665432110 000011123445543 35677899
Q ss_pred hhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 491 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 491 pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
+.+++||.+.+.|++++.+++.+||.. . ....+ +.++++++..|++.+ .+.+|.+.+++
T Consensus 165 ~~l~sR~~l~~~Ld~~~~~~l~~iL~~----~-------~~~~~--~~~~~~~~~~ia~~~--------~G~~R~a~~ll 223 (334)
T 1in4_A 165 SPLRSRFGIILELDFYTVKELKEIIKR----A-------ASLMD--VEIEDAAAEMIAKRS--------RGTPRIAIRLT 223 (334)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHH----H-------HHHTT--CCBCHHHHHHHHHTS--------TTCHHHHHHHH
T ss_pred HHHHHhcCceeeCCCCCHHHHHHHHHH----H-------HHHcC--CCcCHHHHHHHHHhc--------CCChHHHHHHH
Confidence 999999999999999999999999951 1 12234 468899999998765 56789999999
Q ss_pred HHHHHHhhcccCCCeeEEccccccccccc
Q psy2392 571 EKLLEEVSFNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 571 e~~l~~~~~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
+++..-...... -.||.+.|++.+..
T Consensus 224 ~~~~~~a~~~~~---~~It~~~v~~al~~ 249 (334)
T 1in4_A 224 KRVRDMLTVVKA---DRINTDIVLKTMEV 249 (334)
T ss_dssp HHHHHHHHHHTC---SSBCHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---CCcCHHHHHHHHHH
Confidence 887654322211 23777777776654
No 97
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.40 E-value=2.4e-12 Score=154.59 Aligned_cols=154 Identities=19% Similarity=0.196 Sum_probs=92.8
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCe
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 499 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~ 499 (1165)
.+|+|||||+++.+. +|..||..|+...++...........++|+|++- ......+.++|+.||.+
T Consensus 110 ~~IL~IDEI~r~~~~-------------~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~-lpe~~~~~~aLldRF~~ 175 (500)
T 3nbx_X 110 AEIVFLDEIWKAGPA-------------ILNTLLTAINERQFRNGAHVEKIPMRLLVAASNE-LPEADSSLEALYDRMLI 175 (500)
T ss_dssp CSEEEEESGGGCCHH-------------HHHHHHHHHHSSEEECSSSEEECCCCEEEEEESS-CCCTTCTTHHHHTTCCE
T ss_pred ceeeeHHhHhhhcHH-------------HHHHHHHHHHHHhccCCCCcCCcchhhhhhcccc-CCCccccHHHHHHHHHH
Confidence 579999999987655 7889999998776654222222233344555331 11112366899999999
Q ss_pred eEecCCCCH-HHHHHHHhhhhH--------------hHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHh--ccccCCccC
Q psy2392 500 RVELDSLSI-SDFTRIMTSTNV--------------CLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC--INERTENIG 562 (1165)
Q Consensus 500 ~v~~~~L~~-~~l~~Il~~~~~--------------~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~--~~~~~~~~G 562 (1165)
.+.+++++. +++..|+..... .-+..+.+.. -.+.+++++++++++.... -.+....++
T Consensus 176 ~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~----~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS 251 (500)
T 3nbx_X 176 RLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEI----GEITLPDHVFELIFMLRQQLDKLPDAPYVS 251 (500)
T ss_dssp EEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHH----TTCBCCHHHHHHHHHHHHHHHHCSSSCCCC
T ss_pred HHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcC----CcccCchHHHHHHHHHHHHhhcCCCCCccc
Confidence 999999997 778888863210 0111122211 2357889999999988742 112234567
Q ss_pred cchhHHHHHHHHHHhhcccCCCeeEEcccccc
Q psy2392 563 ARRLYTAMEKLLEEVSFNSNNISLLVDADYVN 594 (1165)
Q Consensus 563 AR~l~~~ie~~l~~~~~~~~~~~~~i~~~~v~ 594 (1165)
.|.+..++...-....++- + -.|+++.|.
T Consensus 252 ~R~~~~llr~A~A~A~l~g--r-~~Vt~eDv~ 280 (500)
T 3nbx_X 252 DRRWKKAIRLLQASAFFSG--R-SAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHHHHHHHHHTT--C-SBCCGGGGG
T ss_pred hhHHHHHHHHHHHHHhhcC--C-ccccchHHH
Confidence 8888877765433332221 1 235566665
No 98
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.40 E-value=1e-12 Score=157.64 Aligned_cols=178 Identities=28% Similarity=0.468 Sum_probs=121.6
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|+|+++++..+.+.+.. ++.......... ..+++++|+||||||||+||+++|..++.+|+.++++++.+. |+|.
T Consensus 31 ~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~-~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~-~~g~ 107 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEF-LKNPSRFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGV 107 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSC-CCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS-CTTH
T ss_pred HHcCCcHHHHHHHHHHHHH-hhchhhhhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh-hhhh
Confidence 6899999999999887753 222211111111 124679999999999999999999999999999999998765 6654
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
.. ..++.+|..+
T Consensus 108 ~~-~~v~~lfq~a------------------------------------------------------------------- 119 (499)
T 2dhr_A 108 GA-ARVRDLFETA------------------------------------------------------------------- 119 (499)
T ss_dssp HH-HHHHHHTTTS-------------------------------------------------------------------
T ss_pred HH-HHHHHHHHHH-------------------------------------------------------------------
Confidence 31 1233322111
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
. ...++|
T Consensus 120 ----------------------------------~---------------------------------------~~~p~i 126 (499)
T 2dhr_A 120 ----------------------------------K---------------------------------------RHAPCI 126 (499)
T ss_dssp ----------------------------------S---------------------------------------SSSSCE
T ss_pred ----------------------------------H---------------------------------------hcCCCE
Confidence 0 003589
Q ss_pred eeehhhhhhhccCCCC-CCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--cCCe
Q psy2392 1021 IFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPI 1097 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~-~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~i 1097 (1165)
+||||||.+....... .+.....+...+.||..++|.. ....+++|++. +.|..+.|.|++ ||..
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~--------~~~~viviAat----n~p~~LD~aLlr~gRfdr 194 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE--------KDTAIVVMAAT----NRPDILDPALLRPGRFDR 194 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC--------SSCCCEEEECC----SCGGGSCTTTSSTTSSCC
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc--------cCccEEEEEec----CChhhcCcccccccccce
Confidence 9999999998764321 1111122234466777777532 23446666664 467778889986 8999
Q ss_pred EEEcCCCCHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~ 1114 (1165)
.+.++.++.++..+||+
T Consensus 195 ~i~i~~Pd~~~R~~IL~ 211 (499)
T 2dhr_A 195 QIAIDAPDVKGREQILR 211 (499)
T ss_dssp EEECCCCCHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHH
Confidence 99999999999999987
No 99
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.39 E-value=2.5e-12 Score=142.82 Aligned_cols=141 Identities=18% Similarity=0.258 Sum_probs=82.2
Q ss_pred cceEEEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--
Q psy2392 419 QNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG-- 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~-- 495 (1165)
.++++|+||||.+........ ............++..++|+. ....++++++ ++.|..+.|++++
T Consensus 132 ~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~--------~~~~~i~~a~----t~~p~~ld~~l~r~~ 199 (278)
T 1iy2_A 132 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE--------KDTAIVVMAA----TNRPDILDPALLRPG 199 (278)
T ss_dssp CSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC--------TTCCEEEEEE----ESCTTSSCHHHHSTT
T ss_pred CCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC--------CCCCEEEEEe----cCCchhCCHhHcCCC
Confidence 368999999999976543211 111111223345666666532 2334556665 3678889999986
Q ss_pred CCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHH-HHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 496 RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDG-IQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 496 R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a-~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
||+..|.|.+++.++..+|+. .. + .+. .+++++ +..|+... +++-+|-|.++++++.
T Consensus 200 rf~~~i~i~~p~~~~r~~il~----~~-------~--~~~--~~~~~~~~~~la~~~-------~G~~~~dl~~l~~~a~ 257 (278)
T 1iy2_A 200 RFDRQIAIDAPDVKGREQILR----IH-------A--RGK--PLAEDVDLALLAKRT-------PGFVGADLENLLNEAA 257 (278)
T ss_dssp SSCCEEECCCCCHHHHHHHHH----HH-------H--TTS--CBCTTCCHHHHHHTC-------TTCCHHHHHHHHHHHH
T ss_pred cCCeEEEeCCcCHHHHHHHHH----HH-------H--ccC--CCCcccCHHHHHHHc-------CCCCHHHHHHHHHHHH
Confidence 999999999999999999984 11 1 122 333333 55555433 2333477888888776
Q ss_pred HHhhcccCCCeeEEcccccccc
Q psy2392 575 EEVSFNSNNISLLVDADYVNSR 596 (1165)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~v~~~ 596 (1165)
.....+. ...|+.+.+++.
T Consensus 258 ~~a~~~~---~~~I~~~dl~~a 276 (278)
T 1iy2_A 258 LLAAREG---RRKITMKDLEEA 276 (278)
T ss_dssp HHHHHTT---CCSBCHHHHHHH
T ss_pred HHHHHhC---CCCcCHHHHHHH
Confidence 5432211 123555555443
No 100
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=6.9e-13 Score=151.07 Aligned_cols=108 Identities=20% Similarity=0.233 Sum_probs=81.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.++||||||+|.+.+. .|+.|+.++|... .+..||+++ +.|..+.|.+.+|+.
T Consensus 133 ~~~vliiDE~~~l~~~-------------~~~~Ll~~le~~~----------~~~~~il~~----~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD-------------AQSALRRTMETYS----------GVTRFCLIC----NYVTRIIDPLASQCS 185 (353)
T ss_dssp SCEEEEETTGGGSCHH-------------HHHHHHHHHHHTT----------TTEEEEEEE----SCGGGSCHHHHHHSE
T ss_pred CceEEEEECCCccCHH-------------HHHHHHHHHHhcC----------CCceEEEEe----CchhhCcchhhccCc
Confidence 4679999999999765 5668998887521 233445443 356679999999997
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 575 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~ 575 (1165)
.+.|.+++.+++.+++. ..+..+|+ .+++++++.|++.+ ++..|.+.+.++++..
T Consensus 186 -~i~~~~~~~~~~~~~l~-----------~~~~~~~~--~i~~~~l~~l~~~~--------~G~~r~~~~~l~~~~~ 240 (353)
T 1sxj_D 186 -KFRFKALDASNAIDRLR-----------FISEQENV--KCDDGVLERILDIS--------AGDLRRGITLLQSASK 240 (353)
T ss_dssp -EEECCCCCHHHHHHHHH-----------HHHHTTTC--CCCHHHHHHHHHHT--------SSCHHHHHHHHHHTHH
T ss_pred -eEEeCCCCHHHHHHHHH-----------HHHHHhCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH
Confidence 67999999999999884 22334454 68899999999876 4678988888887653
No 101
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.38 E-value=1.2e-12 Score=147.83 Aligned_cols=130 Identities=22% Similarity=0.316 Sum_probs=88.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeecee--ecCceEEEEEeCCcccC---CCCCCchhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI--IKTDHILFIASGAFHLA---KPSDLIPEL 493 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~--~~t~~ilfI~~gaf~~~---~p~~l~pel 493 (1165)
.+|++||||||.+... +|..||.+++...+. +.|. ....++.+|++++.... ....|.+.|
T Consensus 96 ~~g~L~LDEi~~l~~~-------------~q~~Ll~~l~~~~~~-~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L 161 (304)
T 1ojl_A 96 DGGTLFLDEIGDISPL-------------MQVRLLRAIQEREVQ-RVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDL 161 (304)
T ss_dssp TTSEEEEESCTTCCHH-------------HHHHHHHHHHSSBCC-BTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHH
T ss_pred CCCEEEEeccccCCHH-------------HHHHHHHHHhcCEee-ecCCcccccCCeEEEEecCccHHHHHHhCCcHHHH
Confidence 4689999999999754 777899999875542 2221 11235667777643210 112478899
Q ss_pred hCCC-CeeEecCCCC--HHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 494 QGRF-PIRVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 494 ~~R~-~~~v~~~~L~--~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
..|| .+.|.++||. .+|+..++. .++.++...+.. -...|++++++.|..+.+ .++.|.|++++
T Consensus 162 ~~Rl~~~~i~lPpL~eR~edi~~l~~----~~l~~~~~~~~~--~~~~~s~~a~~~L~~~~w-------pGnvReL~~~l 228 (304)
T 1ojl_A 162 YYRLNVVAIEMPSLRQRREDIPLLAD----HFLRRFAERNRK--VVKGFTPQAMDLLIHYDW-------PGNIRELENAI 228 (304)
T ss_dssp HHHHSSEEEECCCSGGGGGGHHHHHH----HHHHHHHHHTTC--CCCCBCHHHHHHHHHCCC-------SSHHHHHHHHH
T ss_pred HhhcCeeEEeccCHHHhHhhHHHHHH----HHHHHHHHHhcc--CccCCCHHHHHHHHcCCC-------CCCHHHHHHHH
Confidence 9998 5668899999 688888773 344443332221 235789999999987542 36789999999
Q ss_pred HHHHH
Q psy2392 571 EKLLE 575 (1165)
Q Consensus 571 e~~l~ 575 (1165)
++++.
T Consensus 229 ~~~~~ 233 (304)
T 1ojl_A 229 ERAVV 233 (304)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99874
No 102
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.37 E-value=3e-12 Score=143.62 Aligned_cols=123 Identities=21% Similarity=0.298 Sum_probs=88.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|++... .++.|+..+|.. ..++.||+++ +.+..+.|.+.+|+.
T Consensus 107 ~~~viiiDe~~~l~~~-------------~~~~L~~~le~~----------~~~~~~il~~----~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-------------AQQALRRTMELY----------SNSTRFAFAC----NQSNKIIEPLQSQCA 159 (323)
T ss_dssp CCEEEEEESGGGSCHH-------------HHHTTHHHHHHT----------TTTEEEEEEE----SCGGGSCHHHHTTSE
T ss_pred CceEEEEECcccCCHH-------------HHHHHHHHHhcc----------CCCceEEEEe----CChhhchhHHHhhce
Confidence 3679999999999754 466888888742 2345555553 356678999999987
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.+.|.+|+.+++.+++. ..+..+|+ .+++++++.|++.+ ++..|.+.+.+++.....
T Consensus 160 -~i~~~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~--------~G~~r~a~~~l~~~~~~~- 216 (323)
T 1sxj_B 160 -ILRYSKLSDEDVLKRLL-----------QIIKLEDV--KYTNDGLEAIIFTA--------EGDMRQAINNLQSTVAGH- 216 (323)
T ss_dssp -EEECCCCCHHHHHHHHH-----------HHHHHHTC--CBCHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHH-
T ss_pred -EEeecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHhcC-
Confidence 67999999999999884 11223454 58899999999887 567888888888875321
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
-.|+.+.|.+.++
T Consensus 217 -------~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 217 -------GLVNADNVFKIVD 229 (323)
T ss_dssp -------SSBCHHHHHHHHT
T ss_pred -------CCcCHHHHHHHHC
Confidence 1256666655544
No 103
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.37 E-value=6.7e-13 Score=146.06 Aligned_cols=115 Identities=18% Similarity=0.237 Sum_probs=77.9
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeec--cCceEEEEecCCCCCC---CCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII--KTDHILFIASGAFHLA---KPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~--~t~~ilfI~~gaf~~~---~p~dl~pel 1091 (1165)
..|++||||||++... +|..|+.++|...+. +.|.. ...++.+|+++.-... ....|.|.|
T Consensus 100 ~~~~l~lDEi~~l~~~-------------~q~~Ll~~l~~~~~~-~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L 165 (265)
T 2bjv_A 100 DGGTLFLDELATAPMM-------------VQEKLLRVIEYGELE-RVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADL 165 (265)
T ss_dssp TTSEEEEESGGGSCHH-------------HHHHHHHHHHHCEEC-CCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHH
T ss_pred CCcEEEEechHhcCHH-------------HHHHHHHHHHhCCee-cCCCcccccCCeEEEEecCcCHHHHHHcCCccHHH
Confidence 5689999999999764 899999999865432 22211 2235678888653210 012477999
Q ss_pred hccCC-eEEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCCce--EeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRFP-IRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKI--EFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~~-i~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv~l--~~~~~ai~~ia~~a~~~ 1152 (1165)
..||. +.+.++||.+ +|+..++. ..+.++. ...|..+ .|++++++.|....+..
T Consensus 166 ~~Rl~~~~i~lp~L~~R~~di~~l~~----~~l~~~~---~~~~~~~~~~~~~~a~~~L~~~~~~g 224 (265)
T 2bjv_A 166 LDALAFDVVQLPPLRERESDIMLMAE----YFAIQMC---REIKLPLFPGFTERARETLLNYRWPG 224 (265)
T ss_dssp HHHHCSEEEECCCGGGCHHHHHHHHH----HHHHHHH---HHTTCSSCCCBCHHHHHHHHHSCCTT
T ss_pred HHhhcCcEEeCCChhhhhHHHHHHHH----HHHHHHH---HHhCCCcccCcCHHHHHHHHhCCCCC
Confidence 99995 6789999987 78877766 3344333 3345544 79999999998665543
No 104
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.37 E-value=4.7e-13 Score=149.91 Aligned_cols=92 Identities=26% Similarity=0.366 Sum_probs=72.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
..+||||||+|.+... .|+.|+.++|.. ..++.||+++ +.+..+.|.|.+|+.
T Consensus 102 ~~~vliiDe~~~l~~~-------------~~~~L~~~le~~----------~~~~~~i~~~----~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 102 PFKIIFLDEADALTAD-------------AQAALRRTMEMY----------SKSCRFILSC----NYVSRIIEPIQSRCA 154 (319)
T ss_dssp CCEEEEEETGGGSCHH-------------HHHTTGGGTSSS----------SSSEEEEEEE----SCGGGSCHHHHTTCE
T ss_pred CceEEEEeCCCcCCHH-------------HHHHHHHHHHhc----------CCCCeEEEEe----CChhhcchHHHhhCe
Confidence 3579999999999764 788999999862 2345566654 356789999999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
.++|.+++.+++.++|. ..+..+|+ .+++++++.|+..+
T Consensus 155 -~i~~~~~~~~~~~~~l~-----------~~~~~~~~--~i~~~~l~~l~~~~ 193 (319)
T 2chq_A 155 -VFRFKPVPKEAMKKRLL-----------EICEKEGV--KITEDGLEALIYIS 193 (319)
T ss_dssp -EEECCCCCHHHHHHHHH-----------HHHHTTCC--CBCHHHHHHHHHTT
T ss_pred -EEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc
Confidence 68999999999988887 34556676 68899999998644
No 105
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.37 E-value=1.2e-12 Score=147.11 Aligned_cols=92 Identities=29% Similarity=0.421 Sum_probs=72.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
..++|||||+|.+... .|..|+.++|... .++.||+++ +.|..+.|.+.+|+.
T Consensus 110 ~~~vliiDe~~~l~~~-------------~~~~L~~~le~~~----------~~~~~i~~~----~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 110 SFKIIFLDEADALTQD-------------AQQALRRTMEMFS----------SNVRFILSC----NYSSKIIEPIQSRCA 162 (327)
T ss_dssp SCEEEEEETGGGSCHH-------------HHHHHHHHHHHTT----------TTEEEEEEE----SCGGGSCHHHHHTEE
T ss_pred CCeEEEEeCCCcCCHH-------------HHHHHHHHHHhcC----------CCCeEEEEe----CCccccCHHHHhhCc
Confidence 4679999999999654 7889999998532 344556553 356678999999998
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
.++|.+|+.+++.++|. ..+..+|+ .+++++++.|+..+
T Consensus 163 -~~~~~~l~~~~~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~ 201 (327)
T 1iqp_A 163 -IFRFRPLRDEDIAKRLR-----------YIAENEGL--ELTEEGLQAILYIA 201 (327)
T ss_dssp -EEECCCCCHHHHHHHHH-----------HHHHTTTC--EECHHHHHHHHHHH
T ss_pred -EEEecCCCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHHC
Confidence 57999999999998887 33455676 68999999999876
No 106
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.2e-12 Score=148.52 Aligned_cols=109 Identities=9% Similarity=0.112 Sum_probs=72.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCC-CchhhhccC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD-LIPELQGRF 1095 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~d-l~pel~gR~ 1095 (1165)
...||||||||.+. .|+.|+++++ |......++.+|+.++-. ..|.. |.|.+++||
T Consensus 132 ~~~ii~lDE~d~l~---------------~q~~L~~l~~-------~~~~~~s~~~vI~i~n~~-d~~~~~L~~~v~SR~ 188 (318)
T 3te6_A 132 RKTLILIQNPENLL---------------SEKILQYFEK-------WISSKNSKLSIICVGGHN-VTIREQINIMPSLKA 188 (318)
T ss_dssp CEEEEEEECCSSSC---------------CTHHHHHHHH-------HHHCSSCCEEEEEECCSS-CCCHHHHHTCHHHHT
T ss_pred CceEEEEecHHHhh---------------cchHHHHHHh-------cccccCCcEEEEEEecCc-ccchhhcchhhhccC
Confidence 35699999999997 1556777765 122345678899988732 23332 456778999
Q ss_pred C-eEEEcCCCCHHHHHHHHhhhHHHhHHHHHH-HH-------------------------hhcCCceEeCHHHHHHHHHH
Q psy2392 1096 P-IRVELDSLSISDFTRIMTSTNVCLTKQYEA-LL-------------------------ATEGIKIEFVDDGIQRLAEI 1148 (1165)
Q Consensus 1096 ~-i~v~l~~l~~~~l~~il~~~~~~l~~q~~~-l~-------------------------~~egv~l~~~~~ai~~ia~~ 1148 (1165)
. -++.|+|++.+++.+||+ + -+..... .+ ....+++.++++||+.+|+.
T Consensus 189 ~~~~i~F~pYt~~el~~Il~---~-Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~ 264 (318)
T 3te6_A 189 HFTEIKLNKVDKNELQQMII---T-RLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKN 264 (318)
T ss_dssp TEEEEECCCCCHHHHHHHHH---H-HHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHH
T ss_pred CceEEEeCCCCHHHHHHHHH---H-HHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHH
Confidence 5 578999999999999999 2 2222110 00 00013457899999999997
Q ss_pred Hhcc
Q psy2392 1149 AYCI 1152 (1165)
Q Consensus 1149 a~~~ 1152 (1165)
++..
T Consensus 265 vA~~ 268 (318)
T 3te6_A 265 VANV 268 (318)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 6553
No 107
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.36 E-value=9.6e-12 Score=143.27 Aligned_cols=116 Identities=19% Similarity=0.189 Sum_probs=79.2
Q ss_pred eEEEEecchhhhccCCCCCCCccchhhh-hhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCe
Q psy2392 421 GIIFLDEIDKITTRSSQNNNTDISRAGV-QRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 499 (1165)
Q Consensus 421 ~IifiDEidki~~~~~~~~~~~~~~~~v-q~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~ 499 (1165)
.||||||+|.+...... .+ ...|+... .++.||++++-. .-+..+.|.+.+||..
T Consensus 135 ~vlilDEi~~l~~~~~~---------~~~l~~l~~~~--------------~~~~iI~~t~~~-~~~~~l~~~l~sr~~~ 190 (384)
T 2qby_B 135 AIIYLDEVDTLVKRRGG---------DIVLYQLLRSD--------------ANISVIMISNDI-NVRDYMEPRVLSSLGP 190 (384)
T ss_dssp EEEEEETTHHHHHSTTS---------HHHHHHHHTSS--------------SCEEEEEECSST-TTTTTSCHHHHHTCCC
T ss_pred CEEEEECHHHhccCCCC---------ceeHHHHhcCC--------------cceEEEEEECCC-chHhhhCHHHHhcCCC
Confidence 39999999999865311 12 33343322 456777775421 1125688999999977
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
.+.|++|+.+++.+|+.. . +....-...+++++++.+++.+.. ..+.+|.+.++++.+..-
T Consensus 191 ~i~l~~l~~~~~~~il~~----~-------~~~~~~~~~~~~~~~~~i~~~~~~-----~~G~~r~a~~~l~~a~~~ 251 (384)
T 2qby_B 191 SVIFKPYDAEQLKFILSK----Y-------AEYGLIKGTYDDEILSYIAAISAK-----EHGDARKAVNLLFRAAQL 251 (384)
T ss_dssp EEEECCCCHHHHHHHHHH----H-------HHHTSCTTSCCSHHHHHHHHHHHT-----TCCCHHHHHHHHHHHHHH
T ss_pred eEEECCCCHHHHHHHHHH----H-------HHhhcccCCcCHHHHHHHHHHHHh-----ccCCHHHHHHHHHHHHHH
Confidence 999999999999999951 1 111001236889999999998853 246789999999887654
No 108
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.35 E-value=2.4e-12 Score=147.73 Aligned_cols=144 Identities=15% Similarity=0.064 Sum_probs=88.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|.+..... ...+...|+..++.... ..++.+|+++.-. .-+..+.|.+.+||.
T Consensus 130 ~~~vlilDEi~~l~~~~~--------~~~~l~~l~~~~~~~~~--------~~~~~~I~~t~~~-~~~~~l~~~l~~r~~ 192 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPG--------GQDLLYRITRINQELGD--------RVWVSLVGITNSL-GFVENLEPRVKSSLG 192 (387)
T ss_dssp SEEEEEEETTTHHHHSTT--------HHHHHHHHHHGGGCC-------------CEEEEECSCS-TTSSSSCHHHHTTTT
T ss_pred CeEEEEEccHhhhcccCC--------CChHHHhHhhchhhcCC--------CceEEEEEEECCC-chHhhhCHHHHhcCC
Confidence 356999999999976520 00122233333332110 3456677775421 112568899999997
Q ss_pred e-eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 499 I-RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 499 ~-~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
. .+.|++|+.+++.+|+.. .+ ........+++++++.+++.+.. ..+.+|.+.++++.+....
T Consensus 193 ~~~i~l~~l~~~~~~~il~~----~~-------~~~~~~~~~~~~~~~~l~~~~~~-----~~G~~r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 193 EVELVFPPYTAPQLRDILET----RA-------EEAFNPGVLDPDVVPLCAALAAR-----EHGDARRALDLLRVAGEIA 256 (387)
T ss_dssp SEECCBCCCCHHHHHHHHHH----HH-------HHHBCTTTBCSSHHHHHHHHHHS-----SSCCHHHHHHHHHHHHHHH
T ss_pred CeEEeeCCCCHHHHHHHHHH----HH-------HhhccCCCCCHHHHHHHHHHHHH-----hccCHHHHHHHHHHHHHHH
Confidence 6 889999999999999941 11 11011236789999999998854 2477999999999887543
Q ss_pred hcccCCCeeEEcccccccccc
Q psy2392 578 SFNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 578 ~~~~~~~~~~i~~~~v~~~~~ 598 (1165)
..+. .-.|+.+.|++.+.
T Consensus 257 ~~~~---~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 257 ERRR---EERVRREHVYSARA 274 (387)
T ss_dssp HHTT---CSCBCHHHHHHHHH
T ss_pred HHcC---CCCcCHHHHHHHHH
Confidence 2211 12366666665544
No 109
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.35 E-value=1.3e-11 Score=141.59 Aligned_cols=124 Identities=19% Similarity=0.315 Sum_probs=89.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|.+.+. .++.|+..+|.. ..++.||+++ +++..+.|.+.+|+
T Consensus 119 ~~~vliiDe~~~l~~~-------------~~~~Ll~~le~~----------~~~~~~Il~~----~~~~~l~~~l~sr~- 170 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSRH-------------SFNALLKTLEEP----------PEHVKFLLAT----TDPQKLPVTILSRC- 170 (373)
T ss_dssp SSEEEEEECGGGSCHH-------------HHHHHHHHHHSC----------CSSEEEEEEE----SCGGGSCHHHHTTS-
T ss_pred CeEEEEEECcchhcHH-------------HHHHHHHHHhcC----------CCceEEEEEe----CChHhCcHHHHhhe-
Confidence 4679999999999654 566899988752 3456666664 35667889999998
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
..+.|.+|+.+++.+++. ..+..+|+ .+++++++.|++.+ ++..|.+.+.+++++...
T Consensus 171 ~~i~~~~l~~~~~~~~l~-----------~~~~~~~~--~~~~~a~~~l~~~~--------~G~~r~~~~~l~~~~~~~- 228 (373)
T 1jr3_A 171 LQFHLKALDVEQIRHQLE-----------HILNEEHI--AHEPRALQLLARAA--------EGSLRDALSLTDQAIASG- 228 (373)
T ss_dssp EEEECCCCCHHHHHHHHH-----------HHHHHHTC--CBCHHHHHHHHHHS--------SSCHHHHHHHHHHHHHHT-
T ss_pred eEeeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHC--------CCCHHHHHHHHHHHHHhc-
Confidence 568999999999999884 12333454 67899999998876 567899999998875321
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
. . .||.+.|++.++
T Consensus 229 ---~-~--~i~~~~v~~~~~ 242 (373)
T 1jr3_A 229 ---D-G--QVSTQAVSAMLG 242 (373)
T ss_dssp ---T-T--CBCHHHHHHHTT
T ss_pred ---C-C--cccHHHHHHHhC
Confidence 1 1 266666655443
No 110
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.35 E-value=5.3e-13 Score=151.99 Aligned_cols=93 Identities=20% Similarity=0.254 Sum_probs=72.3
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
..+||||||+|.+... .|..|+.++|... .+..||+++ +.|..+.|.|.+|+.
T Consensus 133 ~~~vliiDE~~~l~~~-------------~~~~Ll~~le~~~----------~~~~~il~~----~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD-------------AQSALRRTMETYS----------GVTRFCLIC----NYVTRIIDPLASQCS 185 (353)
T ss_dssp SCEEEEETTGGGSCHH-------------HHHHHHHHHHHTT----------TTEEEEEEE----SCGGGSCHHHHHHSE
T ss_pred CceEEEEECCCccCHH-------------HHHHHHHHHHhcC----------CCceEEEEe----CchhhCcchhhccCc
Confidence 3469999999999765 7889999998532 233445443 467789999999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
.+.|.+++.+++.++|. ..+..+|+ .+++++++.|++.+.
T Consensus 186 -~i~~~~~~~~~~~~~l~-----------~~~~~~~~--~i~~~~l~~l~~~~~ 225 (353)
T 1sxj_D 186 -KFRFKALDASNAIDRLR-----------FISEQENV--KCDDGVLERILDISA 225 (353)
T ss_dssp -EEECCCCCHHHHHHHHH-----------HHHHTTTC--CCCHHHHHHHHHHTS
T ss_pred -eEEeCCCCHHHHHHHHH-----------HHHHHhCC--CCCHHHHHHHHHHcC
Confidence 67999999999998888 33445666 688999999998764
No 111
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.34 E-value=7.3e-12 Score=131.42 Aligned_cols=92 Identities=26% Similarity=0.366 Sum_probs=69.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
..++|||||+|.+... .|..|+.+++.. ..+..||+++ +.+..+.|.|.+|+.
T Consensus 102 ~~~vliiDe~~~l~~~-------------~~~~l~~~l~~~----------~~~~~~i~~~----~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 102 PFKIIFLDEADALTAD-------------AQAALRRTMEMY----------SKSCRFILSC----NYVSRIIEPIQSRCA 154 (226)
T ss_dssp SCEEEEEETGGGSCHH-------------HHHHHHHHHHHT----------TTTEEEEEEE----SCGGGSCHHHHTTSE
T ss_pred CceEEEEeChhhcCHH-------------HHHHHHHHHHhc----------CCCCeEEEEe----CChhhcCHHHHHhCc
Confidence 4679999999998654 677888888752 2344555554 355678899999998
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
.++|.+|+.+++.+++. ..+..+|+ .+++++++.|++.+
T Consensus 155 -~i~~~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~ 193 (226)
T 2chg_A 155 -VFRFKPVPKEAMKKRLL-----------EICEKEGV--KITEDGLEALIYIS 193 (226)
T ss_dssp -EEECCCCCHHHHHHHHH-----------HHHHHHTC--CBCHHHHHHHHHHH
T ss_pred -eeecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc
Confidence 68999999999998888 23334465 58899999998755
No 112
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.34 E-value=1e-12 Score=148.39 Aligned_cols=116 Identities=21% Similarity=0.275 Sum_probs=80.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeec--cCceEEEEecCCCCCC---CCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII--KTDHILFIASGAFHLA---KPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~--~t~~ilfI~~gaf~~~---~p~dl~pel 1091 (1165)
..|++||||||.+... +|..||.++|...+. +.|.. ...++.+|+++.-... ....|.+.|
T Consensus 96 ~~g~L~LDEi~~l~~~-------------~q~~Ll~~l~~~~~~-~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L 161 (304)
T 1ojl_A 96 DGGTLFLDEIGDISPL-------------MQVRLLRAIQEREVQ-RVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDL 161 (304)
T ss_dssp TTSEEEEESCTTCCHH-------------HHHHHHHHHHSSBCC-BTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHH
T ss_pred CCCEEEEeccccCCHH-------------HHHHHHHHHhcCEee-ecCCcccccCCeEEEEecCccHHHHHHhCCcHHHH
Confidence 5799999999999765 899999999876542 33322 1235678888763210 113477889
Q ss_pred hccC-CeEEEcCCCC--HHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRF-PIRVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~-~i~v~l~~l~--~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
..|| .+.+.++||. .+|+..++. ..+.++..-++... ..|++++++.|...++..
T Consensus 162 ~~Rl~~~~i~lPpL~eR~edi~~l~~----~~l~~~~~~~~~~~--~~~s~~a~~~L~~~~wpG 219 (304)
T 1ojl_A 162 YYRLNVVAIEMPSLRQRREDIPLLAD----HFLRRFAERNRKVV--KGFTPQAMDLLIHYDWPG 219 (304)
T ss_dssp HHHHSSEEEECCCSGGGGGGHHHHHH----HHHHHHHHHTTCCC--CCBCHHHHHHHHHCCCSS
T ss_pred HhhcCeeEEeccCHHHhHhhHHHHHH----HHHHHHHHHhccCc--cCCCHHHHHHHHcCCCCC
Confidence 9998 6668999999 688887777 45555544333222 478999999998766544
No 113
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.34 E-value=1.5e-11 Score=130.33 Aligned_cols=124 Identities=19% Similarity=0.338 Sum_probs=87.8
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.+|||||+|.+.+. .++.|+..++.. ..++.+|+++ +.+..+.+.+.+|+
T Consensus 126 ~~~vlviDe~~~l~~~-------------~~~~l~~~l~~~----------~~~~~~i~~t----~~~~~~~~~l~~r~- 177 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRH-------------SFNALLKTLEEP----------PEHVKFLLAT----TDPQKLPVTILSRC- 177 (250)
T ss_dssp SSEEEEEETGGGSCHH-------------HHHHHHHHHHSC----------CTTEEEEEEE----SCGGGSCHHHHTTS-
T ss_pred CceEEEEECcccccHH-------------HHHHHHHHHhcC----------CCceEEEEEe----CChHhCCHHHHHHh-
Confidence 4679999999998644 556788888742 2345566654 34567889999996
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
..+.|++|+.+++.+++. ..+...++ .+++++++.|++.+ .+..|.+.+++++++..
T Consensus 178 ~~i~l~~l~~~e~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~--------~G~~~~~~~~~~~~~~~-- 234 (250)
T 1njg_A 178 LQFHLKALDVEQIRHQLE-----------HILNEEHI--AHEPRALQLLARAA--------EGSLRDALSLTDQAIAS-- 234 (250)
T ss_dssp EEEECCCCCHHHHHHHHH-----------HHHHHTTC--CBCHHHHHHHHHHH--------TTCHHHHHHHHHHHHTT--
T ss_pred hhccCCCCCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHhc--
Confidence 568999999999999884 12233444 67899999999887 45688888888887532
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
... .||.+.|++.++
T Consensus 235 --~~~---~i~~~~v~~~~~ 249 (250)
T 1njg_A 235 --GDG---QVSTQAVSAMLG 249 (250)
T ss_dssp --TTS---SBCHHHHHHHSC
T ss_pred --cCc---eecHHHHHHHhC
Confidence 111 477777766543
No 114
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.34 E-value=5.2e-12 Score=144.33 Aligned_cols=105 Identities=23% Similarity=0.340 Sum_probs=78.8
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCe
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 499 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~ 499 (1165)
+.|++|||+|.++.. .|+.|+..+|.. ..+..||.++ +.+..+.|.+++|+.
T Consensus 111 ~~viiiDe~~~l~~~-------------~~~~L~~~le~~----------~~~~~~il~~----n~~~~i~~~i~sR~~- 162 (340)
T 1sxj_C 111 FKLIILDEADAMTNA-------------AQNALRRVIERY----------TKNTRFCVLA----NYAHKLTPALLSQCT- 162 (340)
T ss_dssp CEEEEETTGGGSCHH-------------HHHHHHHHHHHT----------TTTEEEEEEE----SCGGGSCHHHHTTSE-
T ss_pred ceEEEEeCCCCCCHH-------------HHHHHHHHHhcC----------CCCeEEEEEe----cCccccchhHHhhce-
Confidence 679999999999754 577899999852 2344455543 456779999999997
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
++.|.+++.+++.+++. ..+..+++ .+++++++.+++.+ ++..|++.+.++.+
T Consensus 163 ~~~~~~l~~~~~~~~l~-----------~~~~~~~~--~i~~~~~~~i~~~s--------~G~~r~~~~~l~~~ 215 (340)
T 1sxj_C 163 RFRFQPLPQEAIERRIA-----------NVLVHEKL--KLSPNAEKALIELS--------NGDMRRVLNVLQSC 215 (340)
T ss_dssp EEECCCCCHHHHHHHHH-----------HHHHTTTC--CBCHHHHHHHHHHH--------TTCHHHHHHHTTTT
T ss_pred eEeccCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHH
Confidence 57999999999988873 23344555 57899999999887 56778777777554
No 115
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.33 E-value=2.2e-12 Score=144.68 Aligned_cols=91 Identities=22% Similarity=0.348 Sum_probs=70.6
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..+|||||+|++... .|+.|++++|.. ..++.||+++ +.+..+.|.+.+|+.
T Consensus 108 ~~viiiDe~~~l~~~-------------~~~~L~~~le~~----------~~~~~~il~~----~~~~~l~~~l~sr~~- 159 (323)
T 1sxj_B 108 HKIVILDEADSMTAG-------------AQQALRRTMELY----------SNSTRFAFAC----NQSNKIIEPLQSQCA- 159 (323)
T ss_dssp CEEEEEESGGGSCHH-------------HHHTTHHHHHHT----------TTTEEEEEEE----SCGGGSCHHHHTTSE-
T ss_pred ceEEEEECcccCCHH-------------HHHHHHHHHhcc----------CCCceEEEEe----CChhhchhHHHhhce-
Confidence 569999999999764 688899999852 2344555554 356788999999998
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
+++|.+++.+++.++|. ..++.+|+ .+++++++.|++.+
T Consensus 160 ~i~~~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~ 198 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLL-----------QIIKLEDV--KYTNDGLEAIIFTA 198 (323)
T ss_dssp EEECCCCCHHHHHHHHH-----------HHHHHHTC--CBCHHHHHHHHHHH
T ss_pred EEeecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc
Confidence 57999999999999988 22334566 57899999998876
No 116
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.33 E-value=2.6e-12 Score=146.74 Aligned_cols=92 Identities=23% Similarity=0.334 Sum_probs=72.0
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|++|||+|.+... .|+.|++++|... .+..||++. +.|..+.|.+++||.
T Consensus 111 ~~viiiDe~~~l~~~-------------~~~~L~~~le~~~----------~~~~~il~~----n~~~~i~~~i~sR~~- 162 (340)
T 1sxj_C 111 FKLIILDEADAMTNA-------------AQNALRRVIERYT----------KNTRFCVLA----NYAHKLTPALLSQCT- 162 (340)
T ss_dssp CEEEEETTGGGSCHH-------------HHHHHHHHHHHTT----------TTEEEEEEE----SCGGGSCHHHHTTSE-
T ss_pred ceEEEEeCCCCCCHH-------------HHHHHHHHHhcCC----------CCeEEEEEe----cCccccchhHHhhce-
Confidence 469999999999754 7889999998532 233455443 456789999999998
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
++.|.+++.+++.++|. ..++.+|+ .+++++++.|+..+-
T Consensus 163 ~~~~~~l~~~~~~~~l~-----------~~~~~~~~--~i~~~~~~~i~~~s~ 202 (340)
T 1sxj_C 163 RFRFQPLPQEAIERRIA-----------NVLVHEKL--KLSPNAEKALIELSN 202 (340)
T ss_dssp EEECCCCCHHHHHHHHH-----------HHHHTTTC--CBCHHHHHHHHHHHT
T ss_pred eEeccCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 57999999999988887 44555676 678999999998874
No 117
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.32 E-value=9.5e-12 Score=142.12 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=82.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
++.|++|||+|.+.+. .|+.|+..+|.. ..+..||.++ ..|..+.|.+++|+
T Consensus 134 ~~~vlilDE~~~L~~~-------------~~~~L~~~le~~----------~~~~~~Il~t----~~~~~l~~~l~sR~- 185 (354)
T 1sxj_E 134 RYKCVIINEANSLTKD-------------AQAALRRTMEKY----------SKNIRLIMVC----DSMSPIIAPIKSQC- 185 (354)
T ss_dssp CCEEEEEECTTSSCHH-------------HHHHHHHHHHHS----------TTTEEEEEEE----SCSCSSCHHHHTTS-
T ss_pred CCeEEEEeCccccCHH-------------HHHHHHHHHHhh----------cCCCEEEEEe----CCHHHHHHHHHhhc-
Confidence 5779999999997543 566888888742 1234455543 46777999999999
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeC-HHHHHHHHHHHHhccccCCccCcchhHHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFV-DDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 575 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~-~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~ 575 (1165)
.++.|++++.+++.++|. ..+..+|+ .++ +++++.|++.+ +++.|.+.+.++++..
T Consensus 186 ~~~~~~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~~~l~~i~~~~--------~G~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 186 LLIRCPAPSDSEISTILS-----------DVVTNERI--QLETKDILKRIAQAS--------NGNLRVSLLMLESMAL 242 (354)
T ss_dssp EEEECCCCCHHHHHHHHH-----------HHHHHHTC--EECCSHHHHHHHHHH--------TTCHHHHHHHHTHHHH
T ss_pred eEEecCCcCHHHHHHHHH-----------HHHHHcCC--CCCcHHHHHHHHHHc--------CCCHHHHHHHHHHHHH
Confidence 678999999999999884 22334465 688 99999999877 5789999999988753
No 118
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.30 E-value=8.8e-12 Score=133.31 Aligned_cols=135 Identities=15% Similarity=0.225 Sum_probs=86.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+++|||||+|.+.... ..|..|+.+++... ....+.+|+++......-..+.+.|.+||.
T Consensus 104 ~~~vliiDe~~~~~~~~-----------~~~~~l~~~l~~~~--------~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~ 164 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHP-----------LWEEAIFDLYNRVA--------EQKRGSLIVSASASPMEAGFVLPDLVSRMH 164 (242)
T ss_dssp GSSEEEEETGGGGTTCH-----------HHHHHHHHHHHHHH--------HHCSCEEEEEESSCTTTTTCCCHHHHHHHH
T ss_pred CCCEEEEeccccccCCH-----------HHHHHHHHHHHHHH--------HcCCCeEEEEcCCCHHHHHHhhhhhhhHhh
Confidence 46799999999986542 13556777765311 111221333332211111245699999996
Q ss_pred --eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 499 --IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 499 --~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
..+.|.+++.+++.+++. ..+...|+ .+++++++.|++.+ .+..|.+.++++++...
T Consensus 165 ~~~~i~l~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~--------~g~~r~l~~~l~~~~~~ 223 (242)
T 3bos_A 165 WGLTYQLQPMMDDEKLAALQ-----------RRAAMRGL--QLPEDVGRFLLNRM--------ARDLRTLFDVLDRLDKA 223 (242)
T ss_dssp HSEEEECCCCCGGGHHHHHH-----------HHHHHTTC--CCCHHHHHHHHHHT--------TTCHHHHHHHHHHHHHH
T ss_pred cCceEEeCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------cCCHHHHHHHHHHHHHH
Confidence 788999999999999984 12233454 68899999999865 46789999999988754
Q ss_pred hhcccCCCeeEEccccccccc
Q psy2392 577 VSFNSNNISLLVDADYVNSRL 597 (1165)
Q Consensus 577 ~~~~~~~~~~~i~~~~v~~~~ 597 (1165)
...+ + -.||.+.|++.+
T Consensus 224 a~~~--~--~~It~~~v~~~l 240 (242)
T 3bos_A 224 SMVH--Q--RKLTIPFVKEML 240 (242)
T ss_dssp HHHH--T--CCCCHHHHHHHH
T ss_pred HHHh--C--CCCcHHHHHHHh
Confidence 3211 1 237777666544
No 119
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.30 E-value=7.3e-12 Score=136.87 Aligned_cols=85 Identities=25% Similarity=0.409 Sum_probs=56.0
Q ss_pred CCeeeehhhhhhhccCCCCC-CCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--c
Q psy2392 1018 NGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--R 1094 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~-~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R 1094 (1165)
+.++|+||||.+........ +...........++..++|.. ....++++++. ++|..+.|.+++ |
T Consensus 109 ~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~--------~~~~~i~~a~t----~~p~~ld~~l~r~~r 176 (254)
T 1ixz_A 109 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE--------KDTAIVVMAAT----NRPDILDPALLRPGR 176 (254)
T ss_dssp SEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC--------TTCCEEEEEEE----SCGGGSCGGGGSTTS
T ss_pred CeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC--------CCCCEEEEEcc----CCchhCCHHHcCCCc
Confidence 57999999999986643211 111112234556676666532 22334555553 578888999987 8
Q ss_pred CCeEEEcCCCCHHHHHHHHh
Q psy2392 1095 FPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1095 ~~i~v~l~~l~~~~l~~il~ 1114 (1165)
|+..++++.++.++..+||+
T Consensus 177 f~~~i~i~~p~~~~r~~il~ 196 (254)
T 1ixz_A 177 FDRQIAIDAPDVKGREQILR 196 (254)
T ss_dssp SCEEEECCSCCHHHHHHHHH
T ss_pred CCeEEeeCCcCHHHHHHHHH
Confidence 99999999999999999987
No 120
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.28 E-value=1.1e-11 Score=142.35 Aligned_cols=91 Identities=21% Similarity=0.369 Sum_probs=71.1
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..||||||+|.+... .|+.|+.++|.. ..++.||+++. ++..+.|.+.+|+ .
T Consensus 120 ~~vliiDe~~~l~~~-------------~~~~Ll~~le~~----------~~~~~~Il~~~----~~~~l~~~l~sr~-~ 171 (373)
T 1jr3_A 120 FKVYLIDEVHMLSRH-------------SFNALLKTLEEP----------PEHVKFLLATT----DPQKLPVTILSRC-L 171 (373)
T ss_dssp SEEEEEECGGGSCHH-------------HHHHHHHHHHSC----------CSSEEEEEEES----CGGGSCHHHHTTS-E
T ss_pred eEEEEEECcchhcHH-------------HHHHHHHHHhcC----------CCceEEEEEeC----ChHhCcHHHHhhe-e
Confidence 469999999999654 688999999852 34556666643 5667899999998 5
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
+++|++++.+++.++|. ..++.+|+ .+++++++.|++.+
T Consensus 172 ~i~~~~l~~~~~~~~l~-----------~~~~~~~~--~~~~~a~~~l~~~~ 210 (373)
T 1jr3_A 172 QFHLKALDVEQIRHQLE-----------HILNEEHI--AHEPRALQLLARAA 210 (373)
T ss_dssp EEECCCCCHHHHHHHHH-----------HHHHHHTC--CBCHHHHHHHHHHS
T ss_pred EeeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHC
Confidence 68999999999999888 33444566 67899999998765
No 121
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=2e-11 Score=147.58 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=54.9
Q ss_pred ccEecchhhHHHHHHHHHhhhhh---hcccCCCC-CccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRR---QQITGPLQ-QEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTE 256 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r---~~l~~~~~-~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~ 256 (1165)
++++|++.+++.+..++... .. .++..... ....+.++||+||||||||++|+++|+.++.+++.+++++...
T Consensus 39 ~dliG~~~~~~~L~~~l~~~-~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~ 115 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANW-ENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRS 115 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTH-HHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCC
T ss_pred HHhcCCHHHHHHHHHHHHHh-HhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcch
Confidence 37999999999999988642 11 12211111 1112479999999999999999999999999999999988643
No 122
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.27 E-value=7.4e-12 Score=150.29 Aligned_cols=114 Identities=21% Similarity=0.277 Sum_probs=74.8
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee-eccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~-~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
.+|+|||||+++... +|..||.+||...+.. .| .......++|++.. .......+.++|..||.
T Consensus 110 ~~IL~IDEI~r~~~~-------------~q~~LL~~lee~~v~i-~G~~~~~~~~~iI~ATN-~lpe~~~~~~aLldRF~ 174 (500)
T 3nbx_X 110 AEIVFLDEIWKAGPA-------------ILNTLLTAINERQFRN-GAHVEKIPMRLLVAASN-ELPEADSSLEALYDRML 174 (500)
T ss_dssp CSEEEEESGGGCCHH-------------HHHHHHHHHHSSEEEC-SSSEEECCCCEEEEEES-SCCCTTCTTHHHHTTCC
T ss_pred ceeeeHHhHhhhcHH-------------HHHHHHHHHHHHhccC-CCCcCCcchhhhhhccc-cCCCccccHHHHHHHHH
Confidence 579999999987654 8999999998776654 22 12222333455543 11112236689999999
Q ss_pred eEEEcCCCCH-HHHHHHHhhhHH--------------HhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSI-SDFTRIMTSTNV--------------CLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~-~~l~~il~~~~~--------------~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+++.+++++. ++...||+.-.. .-+.+++... .+ +.++++++++|+.+..
T Consensus 175 ~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~--~~--v~v~d~v~e~i~~l~~ 239 (500)
T 3nbx_X 175 IRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEI--GE--ITLPDHVFELIFMLRQ 239 (500)
T ss_dssp EEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHH--TT--CBCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcC--Cc--ccCchHHHHHHHHHHH
Confidence 9999999987 778888874210 1122222222 23 4788999999998874
No 123
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.27 E-value=5.3e-12 Score=129.35 Aligned_cols=79 Identities=18% Similarity=0.274 Sum_probs=50.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCccc-CCCCCCchhhhCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL-AKPSDLIPELQGRF 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~-~~p~~l~pel~~R~ 497 (1165)
.+.||||||+|.+....... ....+++.|.++++. .++.+|++++... ..-..+.|.|.+||
T Consensus 115 ~~~vl~iDe~~~l~~~~~~~-----~~~~~~~~l~~~~~~------------~~~~~i~~~~~~~~~~~~~~~~~l~~r~ 177 (195)
T 1jbk_A 115 GNVILFIDELHTMVGAGKAD-----GAMDAGNMLKPALAR------------GELHCVGATTLDEYRQYIEKDAALERRF 177 (195)
T ss_dssp TTEEEEEETGGGGTT-----------CCCCHHHHHHHHHT------------TSCCEEEEECHHHHHHHTTTCHHHHTTE
T ss_pred CCeEEEEeCHHHHhccCccc-----chHHHHHHHHHhhcc------------CCeEEEEeCCHHHHHHHHhcCHHHHHHh
Confidence 46699999999998653210 112255566666653 2445666653211 00125789999999
Q ss_pred CeeEecCCCCHHHHHHHH
Q psy2392 498 PIRVELDSLSISDFTRIM 515 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il 515 (1165)
. .+.|.+++.+++.+||
T Consensus 178 ~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 178 Q-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp E-EEECCCCCHHHHHTTC
T ss_pred c-eeecCCCCHHHHHHHh
Confidence 8 4799999999988876
No 124
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.27 E-value=2.1e-12 Score=156.15 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=62.7
Q ss_pred HHHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhh--hcccCCCCC-CCCCceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 765 IIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRR--QQITGPLQQ-EITPKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 765 i~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r--~~l~~~~~~-~~~~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
.|-++.+|..+ ++++|++.+++.+..++...... .++...... ...+.++||+||||||||++|+++|+.++
T Consensus 28 lW~ekyrP~~~-----~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 28 LWTVKYAPTNL-----QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp CHHHHTCCSSG-----GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcccccCCCCH-----HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34567777665 78999999999999998752111 122211111 11247999999999999999999999999
Q ss_pred CCeEEEecCCccc
Q psy2392 842 APFIKIEATKFTE 854 (1165)
Q Consensus 842 ~~fi~l~~se~~~ 854 (1165)
.+++.++++++..
T Consensus 103 ~~~i~in~s~~~~ 115 (516)
T 1sxj_A 103 YDILEQNASDVRS 115 (516)
T ss_dssp CEEEEECTTSCCC
T ss_pred CCEEEEeCCCcch
Confidence 9999999988654
No 125
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.26 E-value=1.3e-11 Score=139.90 Aligned_cols=112 Identities=17% Similarity=0.256 Sum_probs=76.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCC---CCchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS---DLIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~---~l~pel~~ 495 (1165)
..+++||||||.+.... ..|..|+.+++.. ......+++++ . ..|. .+.|.|.+
T Consensus 98 ~~~vL~iDEi~~l~~~~-----------~~~~~l~~~l~~~--------~~~~~~iii~~-~---~~~~~l~~l~~~L~s 154 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKE-----------RTQIEFFHIFNTL--------YLLEKQIILAS-D---RHPQKLDGVSDRLVS 154 (324)
T ss_dssp TCSEEEEECGGGGTTCH-----------HHHHHHHHHHHHH--------HHTTCEEEEEE-S---SCGGGCTTSCHHHHH
T ss_pred CCCEEEEcCcccccCCh-----------HHHHHHHHHHHHH--------HHCCCeEEEEe-c---CChHHHHHhhhHhhh
Confidence 36899999999987431 2455676665421 11122334444 2 2233 58899999
Q ss_pred CCC--eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 496 RFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 496 R~~--~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
||. ..+.|++ +.+++.+|+. . .+...++ .+++++++.|++.+ +++|.|.++++++
T Consensus 155 R~~~~~~i~l~~-~~~e~~~il~----~-------~~~~~~~--~l~~~~l~~l~~~~---------g~~r~l~~~l~~~ 211 (324)
T 1l8q_A 155 RFEGGILVEIEL-DNKTRFKIIK----E-------KLKEFNL--ELRKEVIDYLLENT---------KNVREIEGKIKLI 211 (324)
T ss_dssp HHHTSEEEECCC-CHHHHHHHHH----H-------HHHHTTC--CCCHHHHHHHHHHC---------SSHHHHHHHHHHH
T ss_pred cccCceEEEeCC-CHHHHHHHHH----H-------HHHhcCC--CCCHHHHHHHHHhC---------CCHHHHHHHHHHH
Confidence 996 7789999 9999999984 1 1223444 78899999998755 3579999999988
Q ss_pred HHH
Q psy2392 574 LEE 576 (1165)
Q Consensus 574 l~~ 576 (1165)
+..
T Consensus 212 ~~~ 214 (324)
T 1l8q_A 212 KLK 214 (324)
T ss_dssp HHH
T ss_pred HHc
Confidence 754
No 126
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.26 E-value=3.7e-11 Score=137.24 Aligned_cols=103 Identities=20% Similarity=0.361 Sum_probs=71.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee--------eeeeccCceEEEEecCCCCCCCCCCCc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT--------KYGIIKTDHILFIASGAFHLAKPSDLI 1088 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~--------k~~~~~t~~ilfI~~gaf~~~~p~dl~ 1088 (1165)
...|+||||+|.+... +|..|++.+|...+.. +.....-.++.+|++ .++|..|.
T Consensus 102 ~~~v~~iDE~~~l~~~-------------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~a----t~~~~~Ls 164 (334)
T 1in4_A 102 RGDVLFIDEIHRLNKA-------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGA----TTRSGLLS 164 (334)
T ss_dssp TTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCCCC---------------CCCEEEEE----ESCGGGSC
T ss_pred CCCEEEEcchhhcCHH-------------HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEe----cCCcccCC
Confidence 3569999999998753 6778888777542210 000011123445543 35678899
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1089 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1089 pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
+.+++||.+.+.|++++.+++.+||+. ..+..|+ .++++++..||..+
T Consensus 165 ~~l~sR~~l~~~Ld~~~~~~l~~iL~~-----------~~~~~~~--~~~~~~~~~ia~~~ 212 (334)
T 1in4_A 165 SPLRSRFGIILELDFYTVKELKEIIKR-----------AASLMDV--EIEDAAAEMIAKRS 212 (334)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHH-----------HHHHTTC--CBCHHHHHHHHHTS
T ss_pred HHHHHhcCceeeCCCCCHHHHHHHHHH-----------HHHHcCC--CcCHHHHHHHHHhc
Confidence 999999999999999999999999981 1223354 68899999998765
No 127
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.25 E-value=4.2e-11 Score=137.87 Aligned_cols=96 Identities=18% Similarity=0.195 Sum_probs=65.3
Q ss_pred eeeehhhhhhhccCCCCCCCCccchhh-hhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeE
Q psy2392 1020 IIFLDEIDKITTRSSQNNNTDISRAGV-QRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIR 1098 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~~~~~~~~gv-q~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~ 1098 (1165)
||||||+|.+...... .+ +..|+... .++.||+++.-. .-+..+.|.+.+||...
T Consensus 136 vlilDEi~~l~~~~~~---------~~~l~~l~~~~--------------~~~~iI~~t~~~-~~~~~l~~~l~sr~~~~ 191 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGG---------DIVLYQLLRSD--------------ANISVIMISNDI-NVRDYMEPRVLSSLGPS 191 (384)
T ss_dssp EEEEETTHHHHHSTTS---------HHHHHHHHTSS--------------SCEEEEEECSST-TTTTTSCHHHHHTCCCE
T ss_pred EEEEECHHHhccCCCC---------ceeHHHHhcCC--------------cceEEEEEECCC-chHhhhCHHHHhcCCCe
Confidence 9999999999865210 12 33333322 467788876521 11256889999998779
Q ss_pred EEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1099 VELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+.|+||+.+++.+||. ..+.+ .-.+ ..+++++++.|++.+.
T Consensus 192 i~l~~l~~~~~~~il~----~~~~~-----~~~~--~~~~~~~~~~i~~~~~ 232 (384)
T 2qby_B 192 VIFKPYDAEQLKFILS----KYAEY-----GLIK--GTYDDEILSYIAAISA 232 (384)
T ss_dssp EEECCCCHHHHHHHHH----HHHHH-----TSCT--TSCCSHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHH----HHHHh-----hccc--CCcCHHHHHHHHHHHH
Confidence 9999999999999998 11110 0112 3688999999998876
No 128
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=1.6e-11 Score=140.19 Aligned_cols=92 Identities=18% Similarity=0.304 Sum_probs=71.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
++.|++|||+|.+... .|+.|+.++|... .+..||.++ .+|..+.|.+++||
T Consensus 134 ~~~vlilDE~~~L~~~-------------~~~~L~~~le~~~----------~~~~~Il~t----~~~~~l~~~l~sR~- 185 (354)
T 1sxj_E 134 RYKCVIINEANSLTKD-------------AQAALRRTMEKYS----------KNIRLIMVC----DSMSPIIAPIKSQC- 185 (354)
T ss_dssp CCEEEEEECTTSSCHH-------------HHHHHHHHHHHST----------TTEEEEEEE----SCSCSSCHHHHTTS-
T ss_pred CCeEEEEeCccccCHH-------------HHHHHHHHHHhhc----------CCCEEEEEe----CCHHHHHHHHHhhc-
Confidence 4569999999996543 6889999998521 234455554 36778999999999
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeC-HHHHHHHHHHH
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFV-DDGIQRLAEIA 1149 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~-~~ai~~ia~~a 1149 (1165)
.++.|++++.+++.++|. ..++.+|+ .++ +++++.|++.+
T Consensus 186 ~~~~~~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~~~l~~i~~~~ 226 (354)
T 1sxj_E 186 LLIRCPAPSDSEISTILS-----------DVVTNERI--QLETKDILKRIAQAS 226 (354)
T ss_dssp EEEECCCCCHHHHHHHHH-----------HHHHHHTC--EECCSHHHHHHHHHH
T ss_pred eEEecCCcCHHHHHHHHH-----------HHHHHcCC--CCCcHHHHHHHHHHc
Confidence 678999999999999988 33445676 788 99999999876
No 129
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.23 E-value=2.3e-12 Score=158.25 Aligned_cols=162 Identities=17% Similarity=0.191 Sum_probs=94.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee-eceee--cCceEEEEEeCCcccCC--C-------
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGII--KTDHILFIASGAFHLAK--P------- 486 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~-~~~~~--~t~~ilfI~~gaf~~~~--p------- 486 (1165)
.+||+||||||++.+. +|..|+..||.+.++. +.|.. ...++.+|||.+-.... +
T Consensus 391 ~~gil~IDEid~l~~~-------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~n 457 (595)
T 3f9v_A 391 DGGIAVIDEIDKMRDE-------------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDN 457 (595)
T ss_dssp SSSEECCTTTTCCCSH-------------HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTT
T ss_pred CCCcEEeehhhhCCHh-------------HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhc
Confidence 5799999999999765 7779999999877653 22211 12456677775422100 0
Q ss_pred CCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhH-------------hHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHh
Q psy2392 487 SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNV-------------CLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 553 (1165)
Q Consensus 487 ~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~-------------~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~ 553 (1165)
-.+.|+|++||++++.+.++..++...|+..... ..++++..... ..+.-.+++++.+.|.+....
T Consensus 458 i~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar-~~~~p~ls~ea~~~l~~~y~~ 536 (595)
T 3f9v_A 458 INLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYAR-KYVTPKITSEAKNLITDFFVE 536 (595)
T ss_dssp TCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHH-HHHCCCCCCCTHHHHHHHHTT
T ss_pred cCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHH
Confidence 1789999999997667766666554444431100 11222222211 122336788899999887654
Q ss_pred cccc-------CCccCcchhHHHHHHHHHHhhcccCCCeeEEccccccccc
Q psy2392 554 INER-------TENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRL 597 (1165)
Q Consensus 554 ~~~~-------~~~~GAR~l~~~ie~~l~~~~~~~~~~~~~i~~~~v~~~~ 597 (1165)
+-.. .-.+.+|.|.+++...-.-+..+.. -.|+.+.|++++
T Consensus 537 lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~---~~V~~~dv~~Ai 584 (595)
T 3f9v_A 537 MRKKSSETPDSPILITPRQLEALIRISEAYAKMALK---AEVTREDAERAI 584 (595)
T ss_dssp SSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSS---CCSSHHHHHHHH
T ss_pred HHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCc---CCCCHHHHHHHH
Confidence 2111 1356789999988765433322211 235666665543
No 130
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.23 E-value=1.6e-11 Score=145.59 Aligned_cols=135 Identities=22% Similarity=0.270 Sum_probs=93.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCC---CCchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS---DLIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~---~l~pel~~ 495 (1165)
...|+||||||.+... +..|..|+.+++... .....++|++. ..|. .+.+.|.+
T Consensus 194 ~~~vL~IDEi~~l~~~-----------~~~q~~l~~~l~~l~--------~~~~~iIitt~----~~~~~l~~l~~~L~s 250 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGK-----------TGVQTELFHTFNELH--------DSGKQIVICSD----REPQKLSEFQDRLVS 250 (440)
T ss_dssp TCSEEEEECGGGGSSC-----------HHHHHHHHHHHHHHH--------TTTCEEEEEES----SCGGGCSSCCHHHHH
T ss_pred CCCEEEEeCcccccCC-----------hHHHHHHHHHHHHHH--------HCCCeEEEEEC----CCHHHHHHHHHHHHh
Confidence 4679999999999753 125667777765311 11223344431 1222 38899999
Q ss_pred CCC--eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 496 RFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 496 R~~--~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
||. ..+.|.+++.+++.+||. . .+...|+ .+++++++.|+..+ .+.+|.|.++++++
T Consensus 251 R~~~g~~i~l~~p~~e~r~~iL~----~-------~~~~~~~--~i~~e~l~~la~~~--------~gn~R~l~~~L~~~ 309 (440)
T 2z4s_A 251 RFQMGLVAKLEPPDEETRKSIAR----K-------MLEIEHG--ELPEEVLNFVAENV--------DDNLRRLRGAIIKL 309 (440)
T ss_dssp HHHSSBCCBCCCCCHHHHHHHHH----H-------HHHHHTC--CCCTTHHHHHHHHC--------CSCHHHHHHHHHHH
T ss_pred hccCCeEEEeCCCCHHHHHHHHH----H-------HHHHcCC--CCCHHHHHHHHHhc--------CCCHHHHHHHHHHH
Confidence 996 778999999999999984 1 1222344 67899999998755 57899999999998
Q ss_pred HHHhhcccCCCeeEEcccccccccccCc
Q psy2392 574 LEEVSFNSNNISLLVDADYVNSRLGDLS 601 (1165)
Q Consensus 574 l~~~~~~~~~~~~~i~~~~v~~~~~~~~ 601 (1165)
....... + ..||.+.+++.+++..
T Consensus 310 ~~~a~~~--~--~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 310 LVYKETT--G--KEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHS--S--SCCCHHHHHHHTSTTT
T ss_pred HHHHHHh--C--CCCCHHHHHHHHHHHh
Confidence 7654432 1 2488888888887765
No 131
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.22 E-value=8.3e-11 Score=124.66 Aligned_cols=92 Identities=21% Similarity=0.370 Sum_probs=69.4
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
.+.+|||||+|.+... .++.|+.+++.. ..++.+|+++. .+..+.+.+.+|+
T Consensus 126 ~~~vlviDe~~~l~~~-------------~~~~l~~~l~~~----------~~~~~~i~~t~----~~~~~~~~l~~r~- 177 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRH-------------SFNALLKTLEEP----------PEHVKFLLATT----DPQKLPVTILSRC- 177 (250)
T ss_dssp SSEEEEEETGGGSCHH-------------HHHHHHHHHHSC----------CTTEEEEEEES----CGGGSCHHHHTTS-
T ss_pred CceEEEEECcccccHH-------------HHHHHHHHHhcC----------CCceEEEEEeC----ChHhCCHHHHHHh-
Confidence 3579999999998543 678899888752 23455666543 4567889999996
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
..++|++|+.+++.+++. ..+..+|+ .+++++++.|++.+
T Consensus 178 ~~i~l~~l~~~e~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~ 217 (250)
T 1njg_A 178 LQFHLKALDVEQIRHQLE-----------HILNEEHI--AHEPRALQLLARAA 217 (250)
T ss_dssp EEEECCCCCHHHHHHHHH-----------HHHHHTTC--CBCHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHHc
Confidence 568999999999999888 23344565 67899999998876
No 132
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.22 E-value=4.8e-11 Score=132.47 Aligned_cols=70 Identities=33% Similarity=0.554 Sum_probs=51.0
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhc-ccC-CCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQ-ITG-PLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTE 854 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~-l~~-~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~ 854 (1165)
++|+|+++++..+...+.. |.... +.. .... +.+++|+||||||||+++++++..++.+++.+++.++.+
T Consensus 40 ~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~---~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARI---PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCC---CCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCC---CCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 6899999999888876543 21110 110 1111 356999999999999999999999999999988866543
No 133
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.21 E-value=1.7e-10 Score=132.76 Aligned_cols=127 Identities=13% Similarity=0.110 Sum_probs=81.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|.+.. .++..|+.+++...- ....++.||+++.-. .-+..+.|.+.+||.
T Consensus 125 ~~~vlilDE~~~l~~-------------~~~~~L~~~~~~~~~------~~~~~~~iI~~~~~~-~~~~~l~~~~~~r~~ 184 (389)
T 1fnn_A 125 LYMFLVLDDAFNLAP-------------DILSTFIRLGQEADK------LGAFRIALVIVGHND-AVLNNLDPSTRGIMG 184 (389)
T ss_dssp CCEEEEEETGGGSCH-------------HHHHHHHHHTTCHHH------HSSCCEEEEEEESST-HHHHTSCHHHHHHHT
T ss_pred CeEEEEEECccccch-------------HHHHHHHHHHHhCCC------CCcCCEEEEEEECCc-hHHHHhCHHhhhcCC
Confidence 467999999999832 266788888764210 001355666654311 011457889999988
Q ss_pred e-eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCC-ccCcchhHHHHHHHHHH
Q psy2392 499 I-RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTE-NIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 499 ~-~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~-~~GAR~l~~~ie~~l~~ 576 (1165)
. .+.|+||+.+++.+++.. . +...+....+++++++.+++.+...-.... .+..|.+.+++..+...
T Consensus 185 ~~~i~~~pl~~~~~~~~l~~----~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~ 253 (389)
T 1fnn_A 185 KYVIRFSPYTKDQIFDILLD----R-------AKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYA 253 (389)
T ss_dssp TCEEECCCCBHHHHHHHHHH----H-------HHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHH----H-------HHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHH
Confidence 5 789999999999999841 1 111111226899999999998853100000 35689999999887654
No 134
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.21 E-value=1.1e-11 Score=127.07 Aligned_cols=79 Identities=18% Similarity=0.252 Sum_probs=51.0
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCC-CCCCCCchhhhccCC
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL-AKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~-~~p~dl~pel~gR~~ 1096 (1165)
..|+||||+|.+...... .....+++.|+++++. .++.+|+++.-.. ..-..+.|.|.+||.
T Consensus 116 ~~vl~iDe~~~l~~~~~~-----~~~~~~~~~l~~~~~~------------~~~~~i~~~~~~~~~~~~~~~~~l~~r~~ 178 (195)
T 1jbk_A 116 NVILFIDELHTMVGAGKA-----DGAMDAGNMLKPALAR------------GELHCVGATTLDEYRQYIEKDAALERRFQ 178 (195)
T ss_dssp TEEEEEETGGGGTT-----------CCCCHHHHHHHHHT------------TSCCEEEEECHHHHHHHTTTCHHHHTTEE
T ss_pred CeEEEEeCHHHHhccCcc-----cchHHHHHHHHHhhcc------------CCeEEEEeCCHHHHHHHHhcCHHHHHHhc
Confidence 459999999999865321 1112367777777764 2455677654110 000257799999998
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
.+.|.+++.++..+||+
T Consensus 179 -~i~~~~p~~~~~~~il~ 195 (195)
T 1jbk_A 179 -KVFVAEPSVEDTIAILR 195 (195)
T ss_dssp -EEECCCCCHHHHHTTCC
T ss_pred -eeecCCCCHHHHHHHhC
Confidence 47999999999988763
No 135
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.20 E-value=2.8e-11 Score=136.84 Aligned_cols=68 Identities=10% Similarity=0.260 Sum_probs=56.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|+++.. .|+.||+.+|.. ..+++||.+. ++|+.+.|.+++|
T Consensus 82 ~~kvviIdead~lt~~-------------a~naLLk~LEep----------~~~t~fIl~t----~~~~kl~~tI~SR-- 132 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQ-------------AANAFLKALEEP----------PEYAVIVLNT----RRWHYLLPTIKSR-- 132 (305)
T ss_dssp SSEEEEETTGGGBCHH-------------HHHHTHHHHHSC----------CTTEEEEEEE----SCGGGSCHHHHTT--
T ss_pred CceEEEeccHHHhCHH-------------HHHHHHHHHhCC----------CCCeEEEEEE----CChHhChHHHHce--
Confidence 3679999999999765 577999999962 3556676663 4688999999999
Q ss_pred eeEecCCCCHHHHHHHHh
Q psy2392 499 IRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~ 516 (1165)
++.|++|+.+++.+.|.
T Consensus 133 -~~~f~~l~~~~i~~~L~ 149 (305)
T 2gno_A 133 -VFRVVVNVPKEFRDLVK 149 (305)
T ss_dssp -SEEEECCCCHHHHHHHH
T ss_pred -eEeCCCCCHHHHHHHHH
Confidence 67999999999999884
No 136
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.19 E-value=6.6e-11 Score=135.51 Aligned_cols=142 Identities=18% Similarity=0.130 Sum_probs=88.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|.+...... .+...|+..++.. ...++.+|+++.-. .-...+.+.+.+||.
T Consensus 128 ~~~vlilDE~~~l~~~~~~---------~~l~~l~~~~~~~---------~~~~~~~I~~~~~~-~~~~~~~~~~~~r~~ 188 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYND---------DILYKLSRINSEV---------NKSKISFIGITNDV-KFVDLLDPRVKSSLS 188 (386)
T ss_dssp SCEEEEEETHHHHHHSSCS---------THHHHHHHHHHSC---------CC--EEEEEEESCG-GGGGGCTTHHHHTTT
T ss_pred CeEEEEEcChhhhhccCcC---------HHHHHHhhchhhc---------CCCeEEEEEEECCC-ChHhhhCHHHhccCC
Confidence 3679999999999865311 1444565555431 23456677775421 111346788889986
Q ss_pred -eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 499 -IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 499 -~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
..+.|++|+.+++.+++.. . +...+-...+++++++.+++.+.. ..+..|.+.++++.+....
T Consensus 189 ~~~i~l~~l~~~~~~~il~~----~-------~~~~~~~~~~~~~~~~~l~~~~~~-----~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 189 EEEIIFPPYNAEELEDILTK----R-------AQMAFKPGVLPDNVIKLCAALAAR-----EHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp TEEEEECCCCHHHHHHHHHH----H-------HHHHBCSSCSCHHHHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHH
T ss_pred CeeEEeCCCCHHHHHHHHHH----H-------HHhhccCCCCCHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHH
Confidence 4789999999999999951 1 111122346899999999998853 1366888888888776543
Q ss_pred hcccCCCeeEEcccccccccc
Q psy2392 578 SFNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 578 ~~~~~~~~~~i~~~~v~~~~~ 598 (1165)
..+. ...|+.+.|++.+.
T Consensus 253 ~~~~---~~~i~~~~v~~a~~ 270 (386)
T 2qby_A 253 ERMK---DTKVKEEYVYMAKE 270 (386)
T ss_dssp HHTT---CSSCCHHHHHHHHH
T ss_pred HhcC---CCccCHHHHHHHHH
Confidence 2211 12366666655443
No 137
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.18 E-value=7.8e-11 Score=135.16 Aligned_cols=104 Identities=16% Similarity=0.147 Sum_probs=66.5
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeecc-CceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIK-TDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~-t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
..++||||+|.+.... ..|..|..+++-... .. ..++.||+++.-. .-+..+.|.+.+||.
T Consensus 131 ~~vlilDEi~~l~~~~-----------~~~~~l~~l~~~~~~------~~~~~~~~~I~~t~~~-~~~~~l~~~l~~r~~ 192 (387)
T 2v1u_A 131 IYIIVLDEIDFLPKRP-----------GGQDLLYRITRINQE------LGDRVWVSLVGITNSL-GFVENLEPRVKSSLG 192 (387)
T ss_dssp EEEEEEETTTHHHHST-----------THHHHHHHHHHGGGC------C-----CEEEEECSCS-TTSSSSCHHHHTTTT
T ss_pred eEEEEEccHhhhcccC-----------CCChHHHhHhhchhh------cCCCceEEEEEEECCC-chHhhhCHHHHhcCC
Confidence 4499999999997652 134445544431100 01 3456777776521 112568899999997
Q ss_pred e-EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 I-RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i-~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
. .+.|++|+.+++.+|+. ..+.. .+ .+ ..+++++++.|++.+.
T Consensus 193 ~~~i~l~~l~~~~~~~il~----~~~~~---~~--~~--~~~~~~~~~~l~~~~~ 236 (387)
T 2v1u_A 193 EVELVFPPYTAPQLRDILE----TRAEE---AF--NP--GVLDPDVVPLCAALAA 236 (387)
T ss_dssp SEECCBCCCCHHHHHHHHH----HHHHH---HB--CT--TTBCSSHHHHHHHHHH
T ss_pred CeEEeeCCCCHHHHHHHHH----HHHHh---hc--cC--CCCCHHHHHHHHHHHH
Confidence 6 78999999999999998 11111 01 22 3578999999998876
No 138
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.18 E-value=2e-10 Score=131.18 Aligned_cols=101 Identities=11% Similarity=0.125 Sum_probs=78.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||+|||+|+++.. .++.||..+|.. ..+++||.++ ++|+.+.|.+++|+.
T Consensus 108 ~~kvviIdead~l~~~-------------a~naLLk~lEep----------~~~~~~Il~t----~~~~~l~~ti~SRc~ 160 (334)
T 1a5t_A 108 GAKVVWVTDAALLTDA-------------AANALLKTLEEP----------PAETWFFLAT----REPERLLATLRSRCR 160 (334)
T ss_dssp SCEEEEESCGGGBCHH-------------HHHHHHHHHTSC----------CTTEEEEEEE----SCGGGSCHHHHTTSE
T ss_pred CcEEEEECchhhcCHH-------------HHHHHHHHhcCC----------CCCeEEEEEe----CChHhCcHHHhhcce
Confidence 4789999999999765 567999999862 3456666653 467889999999996
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
++.|++++.+++.++|.. . . .+++++++.+++.+ +++.|.+.+.+++.
T Consensus 161 -~~~~~~~~~~~~~~~L~~-----------~----~---~~~~~~~~~l~~~s--------~G~~r~a~~~l~~~ 208 (334)
T 1a5t_A 161 -LHYLAPPPEQYAVTWLSR-----------E----V---TMSQDALLAALRLS--------AGSPGAALALFQGD 208 (334)
T ss_dssp -EEECCCCCHHHHHHHHHH-----------H----C---CCCHHHHHHHHHHT--------TTCHHHHHHTTSSH
T ss_pred -eeeCCCCCHHHHHHHHHH-----------h----c---CCCHHHHHHHHHHc--------CCCHHHHHHHhccc
Confidence 579999999999988841 0 1 57899999998876 56778777776554
No 139
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.17 E-value=5.1e-11 Score=134.97 Aligned_cols=96 Identities=19% Similarity=0.298 Sum_probs=67.1
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCC---CCchhhhc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS---DLIPELQG 1093 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~---dl~pel~g 1093 (1165)
+.+++||||||.+.... ..|..|+.+++.. ......++|++ . ..|. .+.|.|.+
T Consensus 98 ~~~vL~iDEi~~l~~~~-----------~~~~~l~~~l~~~--------~~~~~~iii~~-~---~~~~~l~~l~~~L~s 154 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKE-----------RTQIEFFHIFNTL--------YLLEKQIILAS-D---RHPQKLDGVSDRLVS 154 (324)
T ss_dssp TCSEEEEECGGGGTTCH-----------HHHHHHHHHHHHH--------HHTTCEEEEEE-S---SCGGGCTTSCHHHHH
T ss_pred CCCEEEEcCcccccCCh-----------HHHHHHHHHHHHH--------HHCCCeEEEEe-c---CChHHHHHhhhHhhh
Confidence 46899999999997531 2677777776521 11222333333 2 2333 58899999
Q ss_pred cCC--eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1094 RFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1094 R~~--i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
||. ..++|+| +.+++.+||. ..+...|+ .+++++++.|+..+
T Consensus 155 R~~~~~~i~l~~-~~~e~~~il~-----------~~~~~~~~--~l~~~~l~~l~~~~ 198 (324)
T 1l8q_A 155 RFEGGILVEIEL-DNKTRFKIIK-----------EKLKEFNL--ELRKEVIDYLLENT 198 (324)
T ss_dssp HHHTSEEEECCC-CHHHHHHHHH-----------HHHHHTTC--CCCHHHHHHHHHHC
T ss_pred cccCceEEEeCC-CHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHhC
Confidence 996 6789999 9999999998 22334455 78899999999876
No 140
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.15 E-value=1.7e-11 Score=123.11 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=46.9
Q ss_pred cccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCcc
Q psy2392 782 YVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFT 853 (1165)
Q Consensus 782 ~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~~ 853 (1165)
+++|+..+...+...+... . ....++||+||||||||++|+++++.. +.+|+ ++|+.+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~----a--------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~ 63 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL----S--------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPD 63 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH----T--------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTT
T ss_pred CceeCCHHHHHHHHHHHHH----h--------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCC
Confidence 5789999999888887642 0 013679999999999999999999987 77899 9998754
No 141
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.15 E-value=2.4e-11 Score=121.99 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=47.2
Q ss_pred cEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccccc
Q psy2392 184 YVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFT 255 (1165)
Q Consensus 184 ~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~~ 255 (1165)
+++|+..+++.+...+... . ....++||+||||||||++|+++++.. +.+|+ ++++.+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~----a--------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~ 63 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL----S--------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPD 63 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH----T--------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTT
T ss_pred CceeCCHHHHHHHHHHHHH----h--------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCC
Confidence 6889999999988877642 0 013689999999999999999999987 67899 9998754
No 142
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.15 E-value=8.1e-11 Score=133.04 Aligned_cols=67 Identities=10% Similarity=0.264 Sum_probs=55.7
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..||||||+|.+... .|+.||+.+|... .+..||.+. ++|+.++|.+++|
T Consensus 83 ~kvviIdead~lt~~-------------a~naLLk~LEep~----------~~t~fIl~t----~~~~kl~~tI~SR--- 132 (305)
T 2gno_A 83 RKYVIVHDCERMTQQ-------------AANAFLKALEEPP----------EYAVIVLNT----RRWHYLLPTIKSR--- 132 (305)
T ss_dssp SEEEEETTGGGBCHH-------------HHHHTHHHHHSCC----------TTEEEEEEE----SCGGGSCHHHHTT---
T ss_pred ceEEEeccHHHhCHH-------------HHHHHHHHHhCCC----------CCeEEEEEE----CChHhChHHHHce---
Confidence 459999999999865 7899999999643 345566553 4688999999999
Q ss_pred EEEcCCCCHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~ 1114 (1165)
+++|++|+.+++.+.|.
T Consensus 133 ~~~f~~l~~~~i~~~L~ 149 (305)
T 2gno_A 133 VFRVVVNVPKEFRDLVK 149 (305)
T ss_dssp SEEEECCCCHHHHHHHH
T ss_pred eEeCCCCCHHHHHHHHH
Confidence 57899999999999987
No 143
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.15 E-value=1.3e-10 Score=124.32 Aligned_cols=101 Identities=15% Similarity=0.212 Sum_probs=67.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
..+++||||+|.+.... ..|..|+.+++... ....+.+|+++......-..+.+.|.+||.
T Consensus 104 ~~~vliiDe~~~~~~~~-----------~~~~~l~~~l~~~~--------~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~ 164 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHP-----------LWEEAIFDLYNRVA--------EQKRGSLIVSASASPMEAGFVLPDLVSRMH 164 (242)
T ss_dssp GSSEEEEETGGGGTTCH-----------HHHHHHHHHHHHHH--------HHCSCEEEEEESSCTTTTTCCCHHHHHHHH
T ss_pred CCCEEEEeccccccCCH-----------HHHHHHHHHHHHHH--------HcCCCeEEEEcCCCHHHHHHhhhhhhhHhh
Confidence 56899999999986541 13777888776321 111222333333221111245599999996
Q ss_pred --eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1097 --IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1097 --i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
..++|++++.+++.+++. ..++..|+ .+++++++.|++.+
T Consensus 165 ~~~~i~l~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~ 206 (242)
T 3bos_A 165 WGLTYQLQPMMDDEKLAALQ-----------RRAAMRGL--QLPEDVGRFLLNRM 206 (242)
T ss_dssp HSEEEECCCCCGGGHHHHHH-----------HHHHHTTC--CCCHHHHHHHHHHT
T ss_pred cCceEEeCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc
Confidence 778999999999999888 23344565 68899999998765
No 144
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.13 E-value=9.5e-12 Score=124.71 Aligned_cols=58 Identities=14% Similarity=0.282 Sum_probs=45.2
Q ss_pred cccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCc
Q psy2392 782 YVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 852 (1165)
Q Consensus 782 ~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~ 852 (1165)
+++|++.+++.+...+.... . ...+++|+||||||||++|+++++... +|+.++++.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~ 62 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-K-----------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEY 62 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-T-----------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTH
T ss_pred CceeCCHHHHHHHHHHHHHh-C-----------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhC
Confidence 57899999998888876421 1 136799999999999999999999888 8888888764
No 145
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.13 E-value=3.3e-11 Score=148.41 Aligned_cols=154 Identities=15% Similarity=0.230 Sum_probs=92.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-----------eecCceEEEEEeCCcccCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-----------IIKTDHILFIASGAFHLAKPS 487 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-----------~~~t~~ilfI~~gaf~~~~p~ 487 (1165)
.+|++||||||++.+. +|..|+..+|...+..... .....++.+|++++.. -..
T Consensus 201 ~~gvL~LDEi~~l~~~-------------~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~--~~~ 265 (604)
T 3k1j_A 201 HKGVLFIDEIATLSLK-------------MQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLD--TVD 265 (604)
T ss_dssp TTSEEEETTGGGSCHH-------------HHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHH--HHH
T ss_pred CCCEEEEechhhCCHH-------------HHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHH--HHh
Confidence 6889999999998654 7889999998665542110 0011355678886421 013
Q ss_pred CCchhhhCCCC---eeEecCCCC---HHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCC--
Q psy2392 488 DLIPELQGRFP---IRVELDSLS---ISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTE-- 559 (1165)
Q Consensus 488 ~l~pel~~R~~---~~v~~~~L~---~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~-- 559 (1165)
.+.|+|++||+ +.+.|.++. .+.+..++. ...+.+...+....+++++++.|++.+........
T Consensus 266 ~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~--------~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l 337 (604)
T 3k1j_A 266 KMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQ--------FVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHL 337 (604)
T ss_dssp HSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHH--------HHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEE
T ss_pred hcCHHHHHHhhccceEeeccccccCCHHHHHHHHH--------HHHHHHhhccCcccCCHHHHHHHHHHHhhhhcccccc
Confidence 58999999997 677876543 344444442 22223333345568999999999998875311100
Q ss_pred ccCcchhHHHHHHHHHHhhcccCCCeeEEcccccccccc
Q psy2392 560 NIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 560 ~~GAR~l~~~ie~~l~~~~~~~~~~~~~i~~~~v~~~~~ 598 (1165)
..-.|.|.++++....-...+. .-.|+.+.|++.+.
T Consensus 338 ~~~~R~l~~llr~A~~~A~~~~---~~~I~~edv~~A~~ 373 (604)
T 3k1j_A 338 TLRLRDLGGIVRAAGDIAVKKG---KKYVEREDVIEAVK 373 (604)
T ss_dssp ECCHHHHHHHHHHHHHHHHHTT---CSSBCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhcC---cccccHHHHHHHHH
Confidence 0126777777776532211111 12467777766553
No 146
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.12 E-value=1.6e-11 Score=123.04 Aligned_cols=58 Identities=14% Similarity=0.282 Sum_probs=45.7
Q ss_pred cEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 184 YVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 184 ~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
+++|++.+++.+.+.+.... . ...+++|+||||||||++|++++.... +|+.++++.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~ 62 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-K-----------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEY 62 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-T-----------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTH
T ss_pred CceeCCHHHHHHHHHHHHHh-C-----------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhC
Confidence 68899999999888876420 0 136899999999999999999999887 8998988764
No 147
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.10 E-value=7.5e-10 Score=127.37 Aligned_cols=102 Identities=14% Similarity=0.170 Sum_probs=68.7
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
+.||||||+|.+.. .+|..|+.+++...- ....++.||+++.-. .-+..+.+.+.+||..
T Consensus 126 ~~vlilDE~~~l~~-------------~~~~~L~~~~~~~~~------~~~~~~~iI~~~~~~-~~~~~l~~~~~~r~~~ 185 (389)
T 1fnn_A 126 YMFLVLDDAFNLAP-------------DILSTFIRLGQEADK------LGAFRIALVIVGHND-AVLNNLDPSTRGIMGK 185 (389)
T ss_dssp CEEEEEETGGGSCH-------------HHHHHHHHHTTCHHH------HSSCCEEEEEEESST-HHHHTSCHHHHHHHTT
T ss_pred eEEEEEECccccch-------------HHHHHHHHHHHhCCC------CCcCCEEEEEEECCc-hHHHHhCHHhhhcCCC
Confidence 45999999999922 378888888874210 011356666664311 0114578899999875
Q ss_pred -EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1098 -RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1098 -~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
++.|+||+.+++.+++.. . +...+....|++++++.|++.+.
T Consensus 186 ~~i~~~pl~~~~~~~~l~~----~-------~~~~~~~~~~~~~~~~~l~~~~~ 228 (389)
T 1fnn_A 186 YVIRFSPYTKDQIFDILLD----R-------AKAGLAEGSYSEDILQMIADITG 228 (389)
T ss_dssp CEEECCCCBHHHHHHHHHH----H-------HHHHBCTTSSCHHHHHHHHHHHS
T ss_pred ceEEeCCCCHHHHHHHHHH----H-------HHhhcCCCCCCHHHHHHHHHHHh
Confidence 789999999999999982 1 11101122689999999998885
No 148
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.09 E-value=6.7e-10 Score=126.82 Aligned_cols=86 Identities=13% Similarity=0.186 Sum_probs=67.7
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..||+|||+|++... .|+.||+.+|.. ..++.||.+. ++|+.+.|.+++|+.
T Consensus 109 ~kvviIdead~l~~~-------------a~naLLk~lEep----------~~~~~~Il~t----~~~~~l~~ti~SRc~- 160 (334)
T 1a5t_A 109 AKVVWVTDAALLTDA-------------AANALLKTLEEP----------PAETWFFLAT----REPERLLATLRSRCR- 160 (334)
T ss_dssp CEEEEESCGGGBCHH-------------HHHHHHHHHTSC----------CTTEEEEEEE----SCGGGSCHHHHTTSE-
T ss_pred cEEEEECchhhcCHH-------------HHHHHHHHhcCC----------CCCeEEEEEe----CChHhCcHHHhhcce-
Confidence 569999999999765 788999999963 2455666553 468889999999997
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
+++|++++.+++.++|.. . . .++++++..++..+
T Consensus 161 ~~~~~~~~~~~~~~~L~~-----------~----~---~~~~~~~~~l~~~s 194 (334)
T 1a5t_A 161 LHYLAPPPEQYAVTWLSR-----------E----V---TMSQDALLAALRLS 194 (334)
T ss_dssp EEECCCCCHHHHHHHHHH-----------H----C---CCCHHHHHHHHHHT
T ss_pred eeeCCCCCHHHHHHHHHH-----------h----c---CCCHHHHHHHHHHc
Confidence 579999999999988871 1 1 46788888887765
No 149
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.08 E-value=1.9e-11 Score=150.12 Aligned_cols=121 Identities=19% Similarity=0.250 Sum_probs=75.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee-eeeecc--CceEEEEecCCCCC-----CC----C
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGIIK--TDHILFIASGAFHL-----AK----P 1084 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~-k~~~~~--t~~ilfI~~gaf~~-----~~----p 1084 (1165)
..||+||||||++... +|..|+..||...++. +.|... ..++.+||+.+-.. .+ .
T Consensus 391 ~~gil~IDEid~l~~~-------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~n 457 (595)
T 3f9v_A 391 DGGIAVIDEIDKMRDE-------------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDN 457 (595)
T ss_dssp SSSEECCTTTTCCCSH-------------HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTT
T ss_pred CCCcEEeehhhhCCHh-------------HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhc
Confidence 6799999999998655 8999999999877753 333221 23466777754210 00 0
Q ss_pred CCCchhhhccCCeEEEcCCCCHHHHHHHHhhhH-------------HHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1085 SDLIPELQGRFPIRVELDSLSISDFTRIMTSTN-------------VCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1085 ~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~-------------~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
-.|.|+|++||++++.+.++...+...|++... ...+++|....+. .+.-.++++|.+.|+....+
T Consensus 458 i~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~ 536 (595)
T 3f9v_A 458 INLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARK-YVTPKITSEAKNLITDFFVE 536 (595)
T ss_dssp TCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHH-HHCCCCCCCTHHHHHHHHTT
T ss_pred cCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH
Confidence 178899999998766676766555444443111 1223444443332 22336788899988887554
No 150
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.06 E-value=8.6e-11 Score=120.29 Aligned_cols=46 Identities=37% Similarity=0.485 Sum_probs=38.6
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
+.++|++..++.+...+... .+.+++|+||||||||++|+++++.+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--------------~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR--------------TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--------------SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC--------------CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 47899999888887776431 23789999999999999999999987
No 151
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.03 E-value=8.4e-10 Score=126.30 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=67.6
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
+.||||||+|.+...... .++..|+..++.. ...++.+|++|.-. .-...+.+.+.+||..
T Consensus 129 ~~vlilDE~~~l~~~~~~---------~~l~~l~~~~~~~---------~~~~~~~I~~~~~~-~~~~~~~~~~~~r~~~ 189 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYND---------DILYKLSRINSEV---------NKSKISFIGITNDV-KFVDLLDPRVKSSLSE 189 (386)
T ss_dssp CEEEEEETHHHHHHSSCS---------THHHHHHHHHHSC---------CC--EEEEEEESCG-GGGGGCTTHHHHTTTT
T ss_pred eEEEEEcChhhhhccCcC---------HHHHHHhhchhhc---------CCCeEEEEEEECCC-ChHhhhCHHHhccCCC
Confidence 569999999999865311 2555666655431 23467777776511 0113467889999863
Q ss_pred -EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1098 -RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1098 -~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
.+.|+||+.+++.++|.. . +...+-...+++++++.|+..+.
T Consensus 190 ~~i~l~~l~~~~~~~il~~----~-------~~~~~~~~~~~~~~~~~l~~~~~ 232 (386)
T 2qby_A 190 EEIIFPPYNAEELEDILTK----R-------AQMAFKPGVLPDNVIKLCAALAA 232 (386)
T ss_dssp EEEEECCCCHHHHHHHHHH----H-------HHHHBCSSCSCHHHHHHHHHHHH
T ss_pred eeEEeCCCCHHHHHHHHHH----H-------HHhhccCCCCCHHHHHHHHHHHH
Confidence 789999999999999982 1 11111133688999999988776
No 152
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.02 E-value=2e-08 Score=139.48 Aligned_cols=90 Identities=16% Similarity=0.106 Sum_probs=57.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCcee-eee-ceeecCceEEEEEeCCccc-CCCCCCchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTV-NTK-YGIIKTDHILFIASGAFHL-AKPSDLIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v-~~~-~~~~~t~~ilfI~~gaf~~-~~p~~l~pel~~ 495 (1165)
...|+|||||+.......+ .. .+...|.+++|.+.+ ..+ ...+...++.||||.+-.. .-...+.|.|++
T Consensus 1336 k~~VlFiDEinmp~~d~yg---~q----~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR 1408 (2695)
T 4akg_A 1336 KNLVLFCDEINLPKLDKYG---SQ----NVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR 1408 (2695)
T ss_dssp SCEEEEEETTTCSCCCSSS---CC----HHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT
T ss_pred ceEEEEecccccccccccC---ch----hHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh
Confidence 3579999999975544332 11 244456667774322 211 1122336788998843111 111369999999
Q ss_pred CCCeeEecCCCCHHHHHHHHh
Q psy2392 496 RFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 496 R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
||. ++.++.++.+++.+|+.
T Consensus 1409 rf~-vi~i~~P~~~~l~~I~~ 1428 (2695)
T 4akg_A 1409 HAA-ILYLGYPSGKSLSQIYE 1428 (2695)
T ss_dssp TEE-EEECCCCTTTHHHHHHH
T ss_pred eee-EEEeCCCCHHHHHHHHH
Confidence 995 57999999999999994
No 153
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.02 E-value=4.5e-10 Score=133.16 Aligned_cols=97 Identities=20% Similarity=0.331 Sum_probs=66.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCC---CCchhhhc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS---DLIPELQG 1093 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~---dl~pel~g 1093 (1165)
+..|+||||||.+... +..|..|+.+++.-. .....++|++ . ..|. .+.+.|.+
T Consensus 194 ~~~vL~IDEi~~l~~~-----------~~~q~~l~~~l~~l~--------~~~~~iIitt-~---~~~~~l~~l~~~L~s 250 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGK-----------TGVQTELFHTFNELH--------DSGKQIVICS-D---REPQKLSEFQDRLVS 250 (440)
T ss_dssp TCSEEEEECGGGGSSC-----------HHHHHHHHHHHHHHH--------TTTCEEEEEE-S---SCGGGCSSCCHHHHH
T ss_pred CCCEEEEeCcccccCC-----------hHHHHHHHHHHHHHH--------HCCCeEEEEE-C---CCHHHHHHHHHHHHh
Confidence 4679999999999763 126788888876311 1122333332 1 1222 37899999
Q ss_pred cCC--eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1094 RFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1094 R~~--i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
||. ..+.|.+++.+++.+||. ..+..+|+ .+++++++.||..+
T Consensus 251 R~~~g~~i~l~~p~~e~r~~iL~-----------~~~~~~~~--~i~~e~l~~la~~~ 295 (440)
T 2z4s_A 251 RFQMGLVAKLEPPDEETRKSIAR-----------KMLEIEHG--ELPEEVLNFVAENV 295 (440)
T ss_dssp HHHSSBCCBCCCCCHHHHHHHHH-----------HHHHHHTC--CCCTTHHHHHHHHC
T ss_pred hccCCeEEEeCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHhc
Confidence 995 668999999999999998 22233455 67899999998755
No 154
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.02 E-value=1e-10 Score=144.14 Aligned_cols=110 Identities=17% Similarity=0.367 Sum_probs=73.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeee------------ccCceEEEEecCCCCCCCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI------------IKTDHILFIASGAFHLAKP 1084 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~------------~~t~~ilfI~~gaf~~~~p 1084 (1165)
+.|++||||||++... +|..|+..+|...+..- |. ....++.+|++|.-.. .
T Consensus 201 ~~gvL~LDEi~~l~~~-------------~q~~Ll~~Le~~~~~~~-g~~~~~~~~~l~~~~~p~~~~vI~atn~~~--~ 264 (604)
T 3k1j_A 201 HKGVLFIDEIATLSLK-------------MQQSLLTAMQEKKFPIT-GQSEMSSGAMVRTEPVPCDFVLVAAGNLDT--V 264 (604)
T ss_dssp TTSEEEETTGGGSCHH-------------HHHHHHHHHHHSEECCB-CSCTTSGGGGCBCSCEECCCEEEEEECHHH--H
T ss_pred CCCEEEEechhhCCHH-------------HHHHHHHHHHcCcEEec-ccccccccccCCCCccceeEEEEEecCHHH--H
Confidence 6799999999998543 89999999996554321 11 0113566888875210 1
Q ss_pred CCCchhhhccCC---eEEEcCCC---CHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1085 SDLIPELQGRFP---IRVELDSL---SISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1085 ~dl~pel~gR~~---i~v~l~~l---~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
..+.|+|..||. +.+.|+++ +.+.+..++. .....+...+....|+++|++.|++.+.
T Consensus 265 ~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~--------~~~~~~~~~~~~~~ls~eAl~~Li~~~~ 328 (604)
T 3k1j_A 265 DKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQ--------FVAQEVKRDGKIPHFTKEAVEEIVREAQ 328 (604)
T ss_dssp HHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHH--------HHHHHHHHHCSSCCBBHHHHHHHHHHHH
T ss_pred hhcCHHHHHHhhccceEeeccccccCCHHHHHHHHH--------HHHHHHhhccCcccCCHHHHHHHHHHHh
Confidence 368899999997 67787654 4444555444 2223333334556899999999999876
No 155
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.01 E-value=1.6e-10 Score=118.27 Aligned_cols=46 Identities=37% Similarity=0.485 Sum_probs=38.4
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
+.++|++..++.+...+... .+.+++|+||||||||++|+.+++.+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--------------~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR--------------TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--------------SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC--------------CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 67899999888877766421 14789999999999999999999987
No 156
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.98 E-value=1.4e-09 Score=126.95 Aligned_cols=130 Identities=19% Similarity=0.266 Sum_probs=89.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
.+|++|||||+.+... +|..||..++.+.+..-.+ .....++-+|++++... .....|.+.|.
T Consensus 231 ~~gtlfldei~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~ 297 (387)
T 1ny5_A 231 DGGTLFLDEIGELSLE-------------AQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLY 297 (387)
T ss_dssp TTSEEEEESGGGCCHH-------------HHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHH
T ss_pred CCcEEEEcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHH
Confidence 5799999999999766 7889999998655432111 11223455777754221 12345888998
Q ss_pred CCCC-eeEecCCCCH--HHHHHHHhhhhHhHHHHHHHHHhhcCCe-eEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 495 GRFP-IRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 495 ~R~~-~~v~~~~L~~--~~l~~Il~~~~~~l~~~~~~ll~~~~i~-l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
.|+. +.+.++||.+ +|+..++ ..++.++... .+.. ..+++++++.|..+.+ .++.|-|++++
T Consensus 298 ~rl~~~~i~lPpLreR~~Di~~l~----~~~l~~~~~~---~~~~~~~~~~~a~~~l~~~~w-------pGNvreL~~~i 363 (387)
T 1ny5_A 298 YRLGVIEIEIPPLRERKEDIIPLA----NHFLKKFSRK---YAKEVEGFTKSAQELLLSYPW-------YGNVRELKNVI 363 (387)
T ss_dssp HHHTTEEEECCCGGGCHHHHHHHH----HHHHHHHHHH---TTCCCCEECHHHHHHHHHSCC-------TTHHHHHHHHH
T ss_pred HhhcCCeecCCcchhccccHHHHH----HHHHHHHHHH---cCCCCCCCCHHHHHHHHhCCC-------CcHHHHHHHHH
Confidence 8874 6688999976 7888777 3445444433 2433 4699999999986443 46799999999
Q ss_pred HHHHH
Q psy2392 571 EKLLE 575 (1165)
Q Consensus 571 e~~l~ 575 (1165)
++.+.
T Consensus 364 ~~~~~ 368 (387)
T 1ny5_A 364 ERAVL 368 (387)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99874
No 157
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.97 E-value=1.6e-09 Score=125.48 Aligned_cols=131 Identities=21% Similarity=0.283 Sum_probs=90.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
..|.+|||||+.+... +|..||+.+|.+.+..-.+ ....-++-+|++++-.. .....|.+.|.
T Consensus 222 ~~gtlfldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~ 288 (368)
T 3dzd_A 222 DQGTLFLDEVGELDQR-------------VQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLY 288 (368)
T ss_dssp TTSEEEEETGGGSCHH-------------HHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHH
T ss_pred CCCeEEecChhhCCHH-------------HHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHH
Confidence 5789999999999876 7889999998665432111 01112445677754221 12345888999
Q ss_pred CCCCe-eEecCCCCH--HHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHH
Q psy2392 495 GRFPI-RVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 571 (1165)
Q Consensus 495 ~R~~~-~v~~~~L~~--~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie 571 (1165)
.|+.+ .|.++||.+ +|+..++ ..++.++...+.. -...++++|++.|..+.+ .+..|.|+++|+
T Consensus 289 ~rl~~~~i~lPpLreR~~Di~~l~----~~~l~~~~~~~~~--~~~~~~~~a~~~L~~~~w-------pGNvreL~n~i~ 355 (368)
T 3dzd_A 289 YRLSVFQIYLPPLRERGKDVILLA----EYFLKKFAKEYKK--NCFELSEETKEYLMKQEW-------KGNVRELKNLIE 355 (368)
T ss_dssp HHHTSEEEECCCGGGSTTHHHHHH----HHHHHHHHHHTTC--CCCCBCHHHHHHHHTCCC-------TTHHHHHHHHHH
T ss_pred HHhCCeEEeCCChhhchhhHHHHH----HHHHHHHHHHcCC--CCCCcCHHHHHHHHhCCC-------CcHHHHHHHHHH
Confidence 99876 488999998 8988887 4455554443322 235799999999986553 366899999999
Q ss_pred HHHH
Q psy2392 572 KLLE 575 (1165)
Q Consensus 572 ~~l~ 575 (1165)
+++.
T Consensus 356 ~~~~ 359 (368)
T 3dzd_A 356 RAVI 359 (368)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
No 158
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.89 E-value=1.8e-09 Score=125.14 Aligned_cols=116 Identities=21% Similarity=0.305 Sum_probs=81.7
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeec--cCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII--KTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~--~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|++|||||+.+... +|..||+.+|...+. +.|.- ..-++-+|++..-.. .....|.+.|
T Consensus 222 ~~gtlfldei~~l~~~-------------~Q~~Ll~~l~~~~~~-~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL 287 (368)
T 3dzd_A 222 DQGTLFLDEVGELDQR-------------VQAKLLRVLETGSFT-RLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDL 287 (368)
T ss_dssp TTSEEEEETGGGSCHH-------------HHHHHHHHHHHSEEC-CBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHH
T ss_pred CCCeEEecChhhCCHH-------------HHHHHHHHHHhCCcc-cCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHH
Confidence 6799999999999876 999999999865543 22321 122455777765221 1234577889
Q ss_pred hccCCe-EEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRFPI-RVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~~i-~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
..|+.+ .+.++||.+ +|+..++. ..+.++..-+.... +.|+++|++.|..+.+..
T Consensus 288 ~~rl~~~~i~lPpLreR~~Di~~l~~----~~l~~~~~~~~~~~--~~~~~~a~~~L~~~~wpG 345 (368)
T 3dzd_A 288 YYRLSVFQIYLPPLRERGKDVILLAE----YFLKKFAKEYKKNC--FELSEETKEYLMKQEWKG 345 (368)
T ss_dssp HHHHTSEEEECCCGGGSTTHHHHHHH----HHHHHHHHHTTCCC--CCBCHHHHHHHHTCCCTT
T ss_pred HHHhCCeEEeCCChhhchhhHHHHHH----HHHHHHHHHcCCCC--CCcCHHHHHHHHhCCCCc
Confidence 999876 478999998 89988877 56666655443322 479999999998776655
No 159
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.84 E-value=5.4e-09 Score=121.86 Aligned_cols=115 Identities=19% Similarity=0.296 Sum_probs=79.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeec--cCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII--KTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~--~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|++|||||+.+... +|..||..+|...+. +.|.- ..-++-+|++..-.. .....|.+.|
T Consensus 231 ~~gtlfldei~~l~~~-------------~q~~Ll~~l~~~~~~-~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl 296 (387)
T 1ny5_A 231 DGGTLFLDEIGELSLE-------------AQAKLLRVIESGKFY-RLGGRKEIEVNVRILAATNRNIKELVKEGKFREDL 296 (387)
T ss_dssp TTSEEEEESGGGCCHH-------------HHHHHHHHHHHSEEC-CBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHH
T ss_pred CCcEEEEcChhhCCHH-------------HHHHHHHHHhcCcEE-eCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHH
Confidence 6799999999999876 999999999865543 22321 223456777755221 1224577888
Q ss_pred hccC-CeEEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCCc-eEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRF-PIRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~-~i~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv~-l~~~~~ai~~ia~~a~~~ 1152 (1165)
..|+ .+.+.++||-+ +|+..++. ..+.++..-+ |.. ..|+++|++.|....+..
T Consensus 297 ~~rl~~~~i~lPpLreR~~Di~~l~~----~~l~~~~~~~---~~~~~~~~~~a~~~l~~~~wpG 354 (387)
T 1ny5_A 297 YYRLGVIEIEIPPLRERKEDIIPLAN----HFLKKFSRKY---AKEVEGFTKSAQELLLSYPWYG 354 (387)
T ss_dssp HHHHTTEEEECCCGGGCHHHHHHHHH----HHHHHHHHHT---TCCCCEECHHHHHHHHHSCCTT
T ss_pred HHhhcCCeecCCcchhccccHHHHHH----HHHHHHHHHc---CCCCCCCCHHHHHHHHhCCCCc
Confidence 8886 56789999976 88887777 5555554443 333 369999999998766654
No 160
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.80 E-value=1.2e-08 Score=119.97 Aligned_cols=159 Identities=16% Similarity=0.109 Sum_probs=90.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCccc-CC------CCCCch
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL-AK------PSDLIP 491 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~-~~------p~~l~p 491 (1165)
..||+|||||+++.++ +|..||..||.++++.. |..-..++.+|||.+-.. .. -..|.+
T Consensus 300 dgGvl~lDEIn~~~~~-------------~qsaLlEaMEe~~VtI~-G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~ 365 (506)
T 3f8t_A 300 DGGILAVDHLEGAPEP-------------HRWALMEAMDKGTVTVD-GIALNARCAVLAAINPGEQWPSDPPIARIDLDQ 365 (506)
T ss_dssp TTSEEEEECCTTCCHH-------------HHHHHHHHHHHSEEEET-TEEEECCCEEEEEECCCC--CCSCGGGGCCSCH
T ss_pred CCCeeehHhhhhCCHH-------------HHHHHHHHHhCCcEEEC-CEEcCCCeEEEEEeCcccccCCCCCccccCCCh
Confidence 5799999999999766 77799999998877654 431123456777743211 00 016888
Q ss_pred hhhCCCCeeEecCCCCHHHH-----HHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccc----------
Q psy2392 492 ELQGRFPIRVELDSLSISDF-----TRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINE---------- 556 (1165)
Q Consensus 492 el~~R~~~~v~~~~L~~~~l-----~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~---------- 556 (1165)
.+++||++.+.+......+- ...+. ...++.+....+...+...+++++.+.|.+.....-.
T Consensus 366 alLDRFDLi~i~~d~pd~e~d~e~~~~~ls---~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~ 442 (506)
T 3f8t_A 366 DFLSHFDLIAFLGVDPRPGEPEEQDTEVPS---YTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGL 442 (506)
T ss_dssp HHHTTCSEEEETTC--------------CC---HHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhheeeEEEecCCCChhHhhcccCCCCC---HHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCccccccccc
Confidence 99999998765544322221 11221 3344555555544566789999999999876543210
Q ss_pred cCCccCcchhHHHHHHHHHHhhcccCCCeeEEccccccccc
Q psy2392 557 RTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRL 597 (1165)
Q Consensus 557 ~~~~~GAR~l~~~ie~~l~~~~~~~~~~~~~i~~~~v~~~~ 597 (1165)
..-....|.+..++.-.-.-.. ...+ -.++.++|++.+
T Consensus 443 ~~~giSpR~leaLiRlA~A~A~--L~gR-~~V~~eDV~~Ai 480 (506)
T 3f8t_A 443 PTLPVTRRQLESVERLAKAHAR--MRLS-DDVEPEDVDIAA 480 (506)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHH--HTTC-SEECHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHH--HcCc-CCCCHHHHHHHH
Confidence 1113445777776643222111 1111 346666666543
No 161
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.78 E-value=3.1e-07 Score=127.79 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=57.2
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee-e-eeeccCceEEEEecCCCCCCCC-----CCCchhh
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-K-YGIIKTDHILFIASGAFHLAKP-----SDLIPEL 1091 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~-k-~~~~~t~~ilfI~~gaf~~~~p-----~dl~pel 1091 (1165)
.|+||||||.-.....+ + ..+...|..++|...+.. + ...+...++.||||.+ .| ..+.|.|
T Consensus 1338 ~VlFiDEinmp~~d~yg---~----q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~N----pp~~gGR~~l~~rl 1406 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYG---S----QNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACN----PPTDPGRIPMSERF 1406 (2695)
T ss_dssp EEEEEETTTCSCCCSSS---C----CHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEEC----CTTSTTCCCCCHHH
T ss_pred EEEEecccccccccccC---c----hhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecC----CCccCCCccCChhh
Confidence 49999999974443221 1 125566777777543321 1 1122336789998853 34 3689999
Q ss_pred hccCCeEEEcCCCCHHHHHHHHh
Q psy2392 1092 QGRFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1092 ~gR~~i~v~l~~l~~~~l~~il~ 1114 (1165)
++||.+ +.++.++.+++.+|+.
T Consensus 1407 lRrf~v-i~i~~P~~~~l~~I~~ 1428 (2695)
T 4akg_A 1407 TRHAAI-LYLGYPSGKSLSQIYE 1428 (2695)
T ss_dssp HTTEEE-EECCCCTTTHHHHHHH
T ss_pred hheeeE-EEeCCCCHHHHHHHHH
Confidence 999965 7999999999999998
No 162
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.75 E-value=7.7e-08 Score=111.54 Aligned_cols=126 Identities=14% Similarity=0.133 Sum_probs=75.9
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecC--ceEEEEEeCCcccCCCCCCc---hhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKT--DHILFIASGAFHLAKPSDLI---PEL 493 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t--~~ilfI~~gaf~~~~p~~l~---pel 493 (1165)
.+.||+|||+|.+...... ...+...|+..++.. ..+. .++.+|+++... .-...+. |.+
T Consensus 138 ~~~llvlDe~~~l~~~~~~-------~~~~l~~l~~~~~~~-------~~~~~~~~v~lI~~~~~~-~~~~~l~~~~~~~ 202 (412)
T 1w5s_A 138 HYLLVILDEFQSMLSSPRI-------AAEDLYTLLRVHEEI-------PSRDGVNRIGFLLVASDV-RALSYMREKIPQV 202 (412)
T ss_dssp CEEEEEEESTHHHHSCTTS-------CHHHHHHHHTHHHHS-------CCTTSCCBEEEEEEEEET-HHHHHHHHHCHHH
T ss_pred CeEEEEEeCHHHHhhccCc-------chHHHHHHHHHHHhc-------ccCCCCceEEEEEEeccc-cHHHHHhhhcchh
Confidence 4679999999999753110 012334455544321 0112 566777665310 0001234 777
Q ss_pred hCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCc---cCcchhHHHH
Q psy2392 494 QGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTEN---IGARRLYTAM 570 (1165)
Q Consensus 494 ~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~---~GAR~l~~~i 570 (1165)
.+|+..++.|.+|+.+++.+++.. . +...+....+++++++.+++.+... . +..|.+..++
T Consensus 203 ~~~~~~~i~l~~l~~~e~~~ll~~----~-------~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~G~p~~~~~l~ 266 (412)
T 1w5s_A 203 ESQIGFKLHLPAYKSRELYTILEQ----R-------AELGLRDTVWEPRHLELISDVYGED-----KGGDGSARRAIVAL 266 (412)
T ss_dssp HTTCSEEEECCCCCHHHHHHHHHH----H-------HHHHBCTTSCCHHHHHHHHHHHCGG-----GTSCCCHHHHHHHH
T ss_pred hhhcCCeeeeCCCCHHHHHHHHHH----H-------HHhcCCCCCCChHHHHHHHHHHHHh-----ccCCCcHHHHHHHH
Confidence 788887899999999999999841 1 1111122357899999999888421 2 5578888887
Q ss_pred HHHHH
Q psy2392 571 EKLLE 575 (1165)
Q Consensus 571 e~~l~ 575 (1165)
..++.
T Consensus 267 ~~a~~ 271 (412)
T 1w5s_A 267 KMACE 271 (412)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 163
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.63 E-value=2.3e-07 Score=107.53 Aligned_cols=105 Identities=11% Similarity=0.173 Sum_probs=63.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccC--ceEEEEecCCCCCCCCC---CCc---
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKT--DHILFIASGAFHLAKPS---DLI--- 1088 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t--~~ilfI~~gaf~~~~p~---dl~--- 1088 (1165)
.+.+|||||+|.+...... ...++..|+..++.. .... .++.+|+++. .|. .+.
T Consensus 138 ~~~llvlDe~~~l~~~~~~-------~~~~l~~l~~~~~~~-------~~~~~~~~v~lI~~~~----~~~~~~~l~~~~ 199 (412)
T 1w5s_A 138 HYLLVILDEFQSMLSSPRI-------AAEDLYTLLRVHEEI-------PSRDGVNRIGFLLVAS----DVRALSYMREKI 199 (412)
T ss_dssp CEEEEEEESTHHHHSCTTS-------CHHHHHHHHTHHHHS-------CCTTSCCBEEEEEEEE----ETHHHHHHHHHC
T ss_pred CeEEEEEeCHHHHhhccCc-------chHHHHHHHHHHHhc-------ccCCCCceEEEEEEec----cccHHHHHhhhc
Confidence 3569999999999754110 112444555555421 1112 5677776653 121 233
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1089 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1089 pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
|.+.+|+..++.|+||+.+++.+++... . ...+....+++++++.|+..+.
T Consensus 200 ~~~~~~~~~~i~l~~l~~~e~~~ll~~~----~-------~~~~~~~~~~~~~~~~i~~~~~ 250 (412)
T 1w5s_A 200 PQVESQIGFKLHLPAYKSRELYTILEQR----A-------ELGLRDTVWEPRHLELISDVYG 250 (412)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHHH----H-------HHHBCTTSCCHHHHHHHHHHHC
T ss_pred chhhhhcCCeeeeCCCCHHHHHHHHHHH----H-------HhcCCCCCCChHHHHHHHHHHH
Confidence 6777888888999999999999999721 1 1111112467788877777665
No 164
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.62 E-value=4.1e-08 Score=115.50 Aligned_cols=121 Identities=16% Similarity=0.135 Sum_probs=74.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCC----CC---CCCCch
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL----AK---PSDLIP 1089 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~----~~---p~dl~p 1089 (1165)
..||+|||||+++... +|..||..||..+|+.- |..-..+..+||+.+=.. ++ -..|-+
T Consensus 300 dgGvl~lDEIn~~~~~-------------~qsaLlEaMEe~~VtI~-G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~ 365 (506)
T 3f8t_A 300 DGGILAVDHLEGAPEP-------------HRWALMEAMDKGTVTVD-GIALNARCAVLAAINPGEQWPSDPPIARIDLDQ 365 (506)
T ss_dssp TTSEEEEECCTTCCHH-------------HHHHHHHHHHHSEEEET-TEEEECCCEEEEEECCCC--CCSCGGGGCCSCH
T ss_pred CCCeeehHhhhhCCHH-------------HHHHHHHHHhCCcEEEC-CEEcCCCeEEEEEeCcccccCCCCCccccCCCh
Confidence 6799999999999776 89999999998877653 431112345666643111 00 016778
Q ss_pred hhhccCCeEEEcCCCCHHHHH--HHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1090 ELQGRFPIRVELDSLSISDFT--RIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1090 el~gR~~i~v~l~~l~~~~l~--~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
.+++||.+.+.+.+....+-. ..-.......++.|....+...++..+++++.++|+++...
T Consensus 366 alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~ 429 (506)
T 3f8t_A 366 DFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYET 429 (506)
T ss_dssp HHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHH
T ss_pred HHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHH
Confidence 999999887655444322111 00001113456677777664566779999999999876543
No 165
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.59 E-value=3.2e-06 Score=118.49 Aligned_cols=89 Identities=26% Similarity=0.205 Sum_probs=57.1
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeee--ceeecCceEEEEEeCCccc-CCCCCCchhhhCC
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK--YGIIKTDHILFIASGAFHL-AKPSDLIPELQGR 496 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~--~~~~~t~~ilfI~~gaf~~-~~p~~l~pel~~R 496 (1165)
..|+|||||+.-.....+ .. .+...|.+++|.+....+ ...+.-.++.||||.+-.. .-...+.|.|++|
T Consensus 1375 ~~VlFiDDiNmp~~D~yG---tQ----~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~ 1447 (3245)
T 3vkg_A 1375 WLVVFCDEINLPSTDKYG---TQ----RVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRH 1447 (3245)
T ss_dssp EEEEEETTTTCCCCCTTS---CC----HHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTT
T ss_pred eEEEEecccCCCCccccc---cc----cHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhh
Confidence 469999999975544332 11 134456677774333221 1122336778888843111 1124589999999
Q ss_pred CCeeEecCCCCHHHHHHHHh
Q psy2392 497 FPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 497 ~~~~v~~~~L~~~~l~~Il~ 516 (1165)
|.+ +.+..++.+++.+|..
T Consensus 1448 F~v-i~i~~ps~esL~~If~ 1466 (3245)
T 3vkg_A 1448 API-LLVDFPSTSSLTQIYG 1466 (3245)
T ss_dssp CCE-EECCCCCHHHHHHHHH
T ss_pred ceE-EEeCCCCHHHHHHHHH
Confidence 998 6999999999999984
No 166
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.50 E-value=5.5e-06 Score=116.11 Aligned_cols=88 Identities=26% Similarity=0.221 Sum_probs=54.6
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceee--eeeccCceEEEEecCCCCC-CCCCCCchhhhccC
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK--YGIIKTDHILFIASGAFHL-AKPSDLIPELQGRF 1095 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k--~~~~~t~~ilfI~~gaf~~-~~p~dl~pel~gR~ 1095 (1165)
.|+|||||+.-.....| +. -+...|.+++|.....-+ ...+.-.++.||||-+=.. .--..+.|.|++||
T Consensus 1376 ~VlFiDDiNmp~~D~yG---tQ----~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F 1448 (3245)
T 3vkg_A 1376 LVVFCDEINLPSTDKYG---TQ----RVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA 1448 (3245)
T ss_dssp EEEEETTTTCCCCCTTS---CC----HHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC
T ss_pred EEEEecccCCCCccccc---cc----cHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc
Confidence 39999999863332221 11 144566677774333221 1122336778888732000 01135889999999
Q ss_pred CeEEEcCCCCHHHHHHHHh
Q psy2392 1096 PIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~ 1114 (1165)
.+ +.++.++.+++.+|..
T Consensus 1449 ~v-i~i~~ps~esL~~If~ 1466 (3245)
T 3vkg_A 1449 PI-LLVDFPSTSSLTQIYG 1466 (3245)
T ss_dssp CE-EECCCCCHHHHHHHHH
T ss_pred eE-EEeCCCCHHHHHHHHH
Confidence 98 6899999999999976
No 167
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.15 E-value=9.6e-06 Score=92.36 Aligned_cols=131 Identities=16% Similarity=0.135 Sum_probs=92.3
Q ss_pred cceEEEEecchh-hhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcc-cCCCCCCchhhhCC
Q psy2392 419 QNGIIFLDEIDK-ITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFH-LAKPSDLIPELQGR 496 (1165)
Q Consensus 419 ~~~IifiDEidk-i~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~-~~~p~~l~pel~~R 496 (1165)
.+.||+|||+|. +.+. .++.|++.+|.. ..+.+++++++... ..+...+.|.+.+|
T Consensus 76 ~~kvvii~~~~~kl~~~-------------~~~aLl~~le~p---------~~~~~~il~~~~~~~~~~~~k~~~~i~sr 133 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAA-------------INEQLLTLTGLL---------HDDLLLIVRGNKLSKAQENAAWFTALANR 133 (343)
T ss_dssp SCEEEEEECCSSCCCTT-------------HHHHHHHHHTTC---------BTTEEEEEEESCCCTTTTTSHHHHHHTTT
T ss_pred CCeEEEEECCCCCCChH-------------HHHHHHHHHhcC---------CCCeEEEEEcCCCChhhHhhHHHHHHHhC
Confidence 467999999998 7543 566899999852 22334444443221 11234588999999
Q ss_pred CCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 497 FPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 497 ~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
+. ++.|.+++.+++.+.+. +.+..+|+ .+++++++.|++.+ +++.|.+.+.++++..
T Consensus 134 ~~-~~~~~~l~~~~l~~~l~-----------~~~~~~g~--~i~~~a~~~l~~~~--------~gdl~~~~~elekl~l- 190 (343)
T 1jr3_D 134 SV-QVTCQTPEQAQLPRWVA-----------ARAKQLNL--ELDDAANQVLCYCY--------EGNLLALAQALERLSL- 190 (343)
T ss_dssp CE-EEEECCCCTTHHHHHHH-----------HHHHHTTC--EECHHHHHHHHHSS--------TTCHHHHHHHHHHHHH-
T ss_pred ce-EEEeeCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHh--------chHHHHHHHHHHHHHH-
Confidence 86 57999999999888773 33455666 78899999999866 5788999999999864
Q ss_pred hhcccCCCeeEEccccccccccc
Q psy2392 577 VSFNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 577 ~~~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
+ .++. .||.+.|++.+..
T Consensus 191 --~-~~~~--~It~e~V~~~~~~ 208 (343)
T 1jr3_D 191 --L-WPDG--KLTLPRVEQAVND 208 (343)
T ss_dssp --H-CTTC--EECHHHHHHHHHH
T ss_pred --h-cCCC--CCCHHHHHHHHhh
Confidence 2 1222 5888888776654
No 168
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.15 E-value=4.8e-05 Score=85.57 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=42.6
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 253 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~ 253 (1165)
..++|.+..++.+..++... ..++++||+|+|||+|++.+++..+ .+.+++..
T Consensus 12 ~~~~gR~~el~~L~~~l~~~----------------~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~ 64 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY----------------PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRE 64 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC----------------SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHH
T ss_pred HhcCChHHHHHHHHHHHhcC----------------CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeec
Confidence 36789998888888876531 5899999999999999999999875 56666543
No 169
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.11 E-value=1.5e-05 Score=89.78 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=42.4
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCC
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 851 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se 851 (1165)
..++|.++.++.|...+... +.++++||+|+|||++++.+++..+ .+.+++..
T Consensus 12 ~~~~gR~~el~~L~~~l~~~----------------~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~ 64 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY----------------PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRE 64 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC----------------SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHH
T ss_pred HhcCChHHHHHHHHHHHhcC----------------CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeec
Confidence 46789998888888776521 5799999999999999999999875 56666643
No 170
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.85 E-value=3.4e-05 Score=87.76 Aligned_cols=96 Identities=16% Similarity=0.141 Sum_probs=69.3
Q ss_pred CCeeeehhhhh-hhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCC-CCCCCCCchhhhccC
Q psy2392 1018 NGIIFLDEIDK-ITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFH-LAKPSDLIPELQGRF 1095 (1165)
Q Consensus 1018 ~gIvfiDEiDk-i~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~-~~~p~dl~pel~gR~ 1095 (1165)
.-||+|||+|+ +... .|+.|++.+|... .+.+++++++... .++...+.|.+.+|+
T Consensus 77 ~kvvii~~~~~kl~~~-------------~~~aLl~~le~p~---------~~~~~il~~~~~~~~~~~~k~~~~i~sr~ 134 (343)
T 1jr3_D 77 RQTLLLLLPENGPNAA-------------INEQLLTLTGLLH---------DDLLLIVRGNKLSKAQENAAWFTALANRS 134 (343)
T ss_dssp CEEEEEECCSSCCCTT-------------HHHHHHHHHTTCB---------TTEEEEEEESCCCTTTTTSHHHHHHTTTC
T ss_pred CeEEEEECCCCCCChH-------------HHHHHHHHHhcCC---------CCeEEEEEcCCCChhhHhhHHHHHHHhCc
Confidence 45999999998 7543 7889999999522 2233344443321 122456889999998
Q ss_pred CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1096 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
.+ ++|.+++.+++.+.++ ..++.+|+ .++++|++.|++.+
T Consensus 135 ~~-~~~~~l~~~~l~~~l~-----------~~~~~~g~--~i~~~a~~~l~~~~ 174 (343)
T 1jr3_D 135 VQ-VTCQTPEQAQLPRWVA-----------ARAKQLNL--ELDDAANQVLCYCY 174 (343)
T ss_dssp EE-EEECCCCTTHHHHHHH-----------HHHHHTTC--EECHHHHHHHHHSS
T ss_pred eE-EEeeCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHh
Confidence 64 7999999999988777 44566787 78899999998764
No 171
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.74 E-value=0.00018 Score=80.99 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=42.4
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
..++|.+..++.+.. +.. ..++++||+|+|||+|++.+++.++..++.+++..+
T Consensus 13 ~~~~gR~~el~~L~~-l~~-----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~ 66 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA-----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKF 66 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS-----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred HHhcChHHHHHHHHH-hcC-----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhh
Confidence 367888877776665 310 489999999999999999999998777777887653
No 172
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.71 E-value=1.5e-05 Score=80.37 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~ 253 (1165)
..++|+||+|+|||+|+++++..+ |...+.+++.+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~ 74 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAAS 74 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHH
Confidence 689999999999999999999988 44445555443
No 173
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.69 E-value=0.00045 Score=77.69 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=42.5
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 852 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~ 852 (1165)
..++|.++.++.|.. +.. +.++++||+|+|||++++.+++.++..++.+++..+
T Consensus 13 ~~~~gR~~el~~L~~-l~~-----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~ 66 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA-----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKF 66 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS-----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred HHhcChHHHHHHHHH-hcC-----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhh
Confidence 467788877777665 320 378999999999999999999998777778887653
No 174
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.68 E-value=4.1e-05 Score=84.50 Aligned_cols=69 Identities=16% Similarity=0.203 Sum_probs=43.1
Q ss_pred hhhhccccccCcccee--eee-eccCceEEEEecCCCCCCC------CC-CCchhhhccCCeEEEcC--------CCCHH
Q psy2392 1046 VQRDLLPLVEGTTVNT--KYG-IIKTDHILFIASGAFHLAK------PS-DLIPELQGRFPIRVELD--------SLSIS 1107 (1165)
Q Consensus 1046 vq~~lL~~~Eg~~v~~--k~~-~~~t~~ilfI~~gaf~~~~------p~-dl~pel~gR~~i~v~l~--------~l~~~ 1107 (1165)
.|..+-.+++|..+.. |+. ...+.+..+|.+.+..... +| +..+.|++|+-+ +.|. +|+.+
T Consensus 163 ~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~~-f~F~~~~p~~~~~lt~~ 241 (267)
T 1u0j_A 163 VVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFK-FELTRRLDHDFGKVTKQ 241 (267)
T ss_dssp THHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEE-EECCSCCCTTSCCCCHH
T ss_pred HHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhEEE-EECCCcCCcccCCCCHH
Confidence 4445666778766654 332 3344444445554433222 33 677899999876 5898 89999
Q ss_pred HHHHHHhh
Q psy2392 1108 DFTRIMTS 1115 (1165)
Q Consensus 1108 ~l~~il~~ 1115 (1165)
+....|++
T Consensus 242 ~~~~f~~w 249 (267)
T 1u0j_A 242 EVKDFFRW 249 (267)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888873
No 175
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.66 E-value=4.2e-05 Score=78.67 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh----CCCceEEec
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS----NAPFIKIEA 251 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l----~~~~i~ld~ 251 (1165)
...++|+||||||||+|+++++..+ +...+.+++
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 3689999999999999999999987 444444443
No 176
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.63 E-value=4.8e-05 Score=76.63 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=28.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 851 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se 851 (1165)
..++|+||+|+|||+|+++++..+ +...+.+++.+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~ 74 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAAS 74 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHH
Confidence 679999999999999999999988 44455555544
No 177
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.57 E-value=0.00014 Score=80.26 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
.+++|+||||||||++|++||..++
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhc
Confidence 5899999999999999999999864
No 178
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.44 E-value=0.00025 Score=95.34 Aligned_cols=73 Identities=14% Similarity=0.093 Sum_probs=44.2
Q ss_pred hhhcccchHHHHHHHHHHHHhHhhhh---------c-ccCC--------C---------CCCCCCceEEEEccCCCChhH
Q psy2392 779 LDKYVIGQNRAKRAVAIALRNRWRRQ---------Q-ITGP--------L---------QQEITPKNILMIGPTGVGKTE 831 (1165)
Q Consensus 779 L~~~IvGQ~~ak~~l~~~i~~~~~r~---------~-l~~~--------~---------~~~~~~~~iLL~GPpG~GKT~ 831 (1165)
=|.+|.|.++++..+.+++.++++.. + .... . ...+..+.+|+|||||||||+
T Consensus 1018 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT~ 1097 (1706)
T 3cmw_A 1018 STGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 1097 (1706)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHH
T ss_pred eeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChHH
Confidence 34789999999988888887765320 0 0000 0 001112459999999999999
Q ss_pred HHHHHHHHc---CCCeEEEecCC
Q psy2392 832 IARRLAKLS---NAPFIKIEATK 851 (1165)
Q Consensus 832 lAk~lA~~l---~~~fi~l~~se 851 (1165)
+|++++.+. +.|-+.++..+
T Consensus 1098 la~~~~~~~~~~g~~~~fi~~~~ 1120 (1706)
T 3cmw_A 1098 LTLQVIAAAQREGKTCAFIDAEH 1120 (1706)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTS
T ss_pred HHHHHHHHhhhcCCceeEEEccc
Confidence 999999877 45555555544
No 179
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.09 E-value=0.00028 Score=72.39 Aligned_cols=25 Identities=36% Similarity=0.512 Sum_probs=23.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
..+++|+||||||||++++++++.+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999887
No 180
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.07 E-value=0.00047 Score=71.88 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=29.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 851 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se 851 (1165)
.+++|+||||||||++|+++++.+ +.+++.+++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 92 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPE 92 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHH
Confidence 789999999999999999999988 45666665543
No 181
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.04 E-value=0.0012 Score=88.72 Aligned_cols=71 Identities=14% Similarity=0.129 Sum_probs=44.0
Q ss_pred ccEecchhhHHHHHHHHHhhhhh----------hcccCC---------------C--CCccCCcEEEEEcCCCCCchHHH
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRR----------QQITGP---------------L--QQEITPKNILMIGPTGVGKTEIA 235 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r----------~~l~~~---------------~--~~~~~~~~~Ll~GPpG~GKT~lA 235 (1165)
.+|.|.+.++..+.+++.+++.+ ...+.. + +-.++...+|++||||||||++|
T Consensus 1020 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT~la 1099 (1706)
T 3cmw_A 1020 GSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLT 1099 (1706)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHH
T ss_pred eecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChHHHH
Confidence 47888999998888888766533 001100 0 11112346999999999999999
Q ss_pred HHHHHHh---CCCceEEeccc
Q psy2392 236 RRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 236 k~lA~~l---~~~~i~ld~s~ 253 (1165)
++++.+. +.|-+-++..+
T Consensus 1100 ~~~~~~~~~~g~~~~fi~~~~ 1120 (1706)
T 3cmw_A 1100 LQVIAAAQREGKTCAFIDAEH 1120 (1706)
T ss_dssp HHHHHHHHHTTCCEEEECTTS
T ss_pred HHHHHHhhhcCCceeEEEccc
Confidence 9999877 45545555433
No 182
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.97 E-value=0.00051 Score=69.92 Aligned_cols=36 Identities=22% Similarity=0.447 Sum_probs=31.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 253 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~ 253 (1165)
+..++++||||+||||+|+.|++.++.+++.++...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 367999999999999999999999998888766543
No 183
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.96 E-value=0.00037 Score=71.52 Aligned_cols=33 Identities=36% Similarity=0.562 Sum_probs=29.3
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
+..++|+|||||||||+|+.||+.++.+++..|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 368999999999999999999999988877554
No 184
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.94 E-value=0.00039 Score=71.42 Aligned_cols=33 Identities=36% Similarity=0.562 Sum_probs=29.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
+..++|+|||||||||+++.||+.++.+|+..|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 468999999999999999999999998877543
No 185
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.94 E-value=0.00064 Score=69.19 Aligned_cols=36 Identities=22% Similarity=0.447 Sum_probs=31.4
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 851 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se 851 (1165)
+..++|.||||+||||+++.|++.++.+|+.++...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 357899999999999999999999998888876543
No 186
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.78 E-value=0.0012 Score=74.66 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=24.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCC--ceEE
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAP--FIKI 249 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~--~i~l 249 (1165)
..++++||||||||+||.++|...+.+ |+.+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 567999999999999999999875433 4444
No 187
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.77 E-value=0.00072 Score=70.50 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~ 253 (1165)
.+++|+||||||||++|++++..+ +.+++.+++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 92 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPE 92 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHH
Confidence 799999999999999999999988 45555555543
No 188
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.74 E-value=0.00072 Score=70.71 Aligned_cols=32 Identities=34% Similarity=0.681 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
..++|+|||||||||+++.||+.++.+++..|
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 68999999999999999999999988876554
No 189
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.71 E-value=0.00075 Score=70.56 Aligned_cols=33 Identities=33% Similarity=0.637 Sum_probs=28.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
...++|+|||||||||+++.||+.++.+|+..|
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 368999999999999999999999998876543
No 190
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.66 E-value=0.00099 Score=69.53 Aligned_cols=33 Identities=33% Similarity=0.549 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
.+..++|+|||||||||+|+.|++.++.+++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 346899999999999999999999998765543
No 191
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.60 E-value=0.0011 Score=66.63 Aligned_cols=31 Identities=32% Similarity=0.395 Sum_probs=27.1
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
.++|.|||||||||+++.|++.++.+++..|
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 6899999999999999999999987765444
No 192
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.58 E-value=0.0012 Score=68.98 Aligned_cols=31 Identities=35% Similarity=0.575 Sum_probs=27.6
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
+..++|.|||||||||+|+.|++.++.+++.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~ 50 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIS 50 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 4679999999999999999999999877654
No 193
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.58 E-value=0.00093 Score=68.54 Aligned_cols=32 Identities=31% Similarity=0.571 Sum_probs=27.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
..++|+|+|||||||+|+.||+.++.+++..|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 46899999999999999999999998766544
No 194
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.58 E-value=0.0014 Score=73.74 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=28.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC----CCeEEEecC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN----APFIKIEAT 850 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~----~~fi~l~~s 850 (1165)
..+++|+||||||||+||.++++.+. .+++.++++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 37899999999999999999998764 555555554
No 195
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.56 E-value=0.0013 Score=66.28 Aligned_cols=31 Identities=32% Similarity=0.395 Sum_probs=26.9
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
.++|.|||||||||+++.|++.++.+|+..|
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999998775433
No 196
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.54 E-value=0.001 Score=68.18 Aligned_cols=32 Identities=31% Similarity=0.571 Sum_probs=27.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
..++|.|+|||||||+|+.|++.++.+++..|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 45899999999999999999999998876533
No 197
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.53 E-value=0.0012 Score=66.89 Aligned_cols=32 Identities=22% Similarity=0.461 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
.+++|.|+|||||||+|+.||+.++.+++..|
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 58999999999999999999999998876544
No 198
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.53 E-value=0.0012 Score=67.96 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
+..++|.|||||||||+++.|++.++.+++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 4689999999999999999999999876554
No 199
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.50 E-value=0.0011 Score=67.98 Aligned_cols=32 Identities=41% Similarity=0.674 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
+..++|+||||||||++++.|++.++.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 36899999999999999999999997665543
No 200
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.49 E-value=0.00098 Score=67.98 Aligned_cols=29 Identities=45% Similarity=0.650 Sum_probs=26.1
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
.++|.|||||||||+|+.||+.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 68999999999999999999999876654
No 201
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.49 E-value=0.001 Score=67.84 Aligned_cols=30 Identities=47% Similarity=0.664 Sum_probs=26.6
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
..++|.|||||||||+|+.||+.++.+|+.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 368999999999999999999999987654
No 202
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.48 E-value=0.0013 Score=66.59 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=27.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
..+++|.|+|||||||+++.||+.++.+++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 3689999999999999999999999988765
No 203
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.47 E-value=0.0014 Score=67.38 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=27.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
+..++|.|||||||||+++.|++.++.+++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 4678999999999999999999999877654
No 204
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.46 E-value=0.0012 Score=67.57 Aligned_cols=32 Identities=41% Similarity=0.674 Sum_probs=27.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 847 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l 847 (1165)
+..++|+|||||||||+++.|++.++.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 36799999999999999999999998766543
No 205
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.43 E-value=0.0012 Score=66.77 Aligned_cols=29 Identities=45% Similarity=0.847 Sum_probs=25.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
..+.|+|||||||||+++.||+.++.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 57999999999999999999999976443
No 206
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.43 E-value=0.0013 Score=67.93 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHH-hCCCceEE
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKL-SNAPFIKI 249 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~-l~~~~i~l 249 (1165)
+..++|+|||||||||+++.||+. ++.+++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 468999999999999999999999 66555433
No 207
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.39 E-value=0.0018 Score=72.93 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=27.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC----CCceEEecc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN----APFIKIEAT 252 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~----~~~i~ld~s 252 (1165)
..+++|+||||||||+||.++|..+. .+++.++++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 37999999999999999999998764 444545543
No 208
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.38 E-value=0.0014 Score=66.24 Aligned_cols=29 Identities=45% Similarity=0.847 Sum_probs=25.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
..+.|+|||||||||+++.||+.++.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 56899999999999999999999987544
No 209
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.38 E-value=0.0036 Score=70.79 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=24.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCC--CeEEE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNA--PFIKI 847 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~--~fi~l 847 (1165)
..++++||||||||+||..++...+. .|+.+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 56799999999999999999986433 35555
No 210
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.36 E-value=0.0015 Score=67.46 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=26.6
Q ss_pred CceEEEEccCCCChhHHHHHHHHH-cCCCeEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKL-SNAPFIK 846 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~-l~~~fi~ 846 (1165)
+..++|+|||||||||+++.|++. ++.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 468999999999999999999999 6765543
No 211
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.35 E-value=0.0015 Score=67.03 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
|..++|.|+|||||||+|+.|++.++.+++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i 32 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL 32 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 468999999999999999999999976543
No 212
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.31 E-value=0.0016 Score=67.06 Aligned_cols=31 Identities=16% Similarity=0.338 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
+..++|.|||||||||+|+.||+.++.+++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 39 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLS 39 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 3689999999999999999999999765443
No 213
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.28 E-value=0.0021 Score=67.10 Aligned_cols=32 Identities=31% Similarity=0.656 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
+..++|+||||+||||+|+.|++.++..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 46899999999999999999999997655543
No 214
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.28 E-value=0.0044 Score=67.41 Aligned_cols=38 Identities=34% Similarity=0.489 Sum_probs=32.6
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
.|..++|+|||||||||+|+.|++.++..++.++...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 35789999999999999999999999866777777655
No 215
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.26 E-value=0.0019 Score=66.54 Aligned_cols=31 Identities=16% Similarity=0.338 Sum_probs=27.0
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
+..++|.|||||||||+|+.|++.++.+++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 39 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLS 39 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 3679999999999999999999999876543
No 216
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.26 E-value=0.0018 Score=66.36 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=26.4
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
+..++|.|+|||||||+|+.|++.++.+++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i 32 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL 32 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 467899999999999999999999987554
No 217
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.23 E-value=0.0023 Score=69.93 Aligned_cols=33 Identities=30% Similarity=0.514 Sum_probs=29.0
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEecc
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEAT 252 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s 252 (1165)
.++++|||||||||+|+.||+.++.+++..|..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 578999999999999999999999887776653
No 218
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.22 E-value=0.0016 Score=66.75 Aligned_cols=29 Identities=31% Similarity=0.531 Sum_probs=25.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
..++|+|||||||||+++.||+.++.+++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 57999999999999999999999975443
No 219
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.21 E-value=0.0024 Score=65.13 Aligned_cols=30 Identities=37% Similarity=0.524 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
+..++|.|+|||||||+|+.|++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 468999999999999999999999988766
No 220
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.21 E-value=0.0018 Score=65.37 Aligned_cols=31 Identities=32% Similarity=0.611 Sum_probs=26.8
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
..++|+|+|||||||+|+.|++.++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 4689999999999999999999998765543
No 221
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.20 E-value=0.0021 Score=68.11 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
+..++|.|||||||||+|+.||+.++.+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 3689999999999999999999999865543
No 222
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.20 E-value=0.0021 Score=66.05 Aligned_cols=37 Identities=30% Similarity=0.522 Sum_probs=31.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~ 852 (1165)
...+.|+|||||||||++++|+..++.+.+.++..++
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 3578899999999999999999988777788876554
No 223
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.18 E-value=0.0025 Score=69.52 Aligned_cols=32 Identities=31% Similarity=0.530 Sum_probs=28.7
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEEEec
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 849 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~ 849 (1165)
.++++|||||||||+|+.||+.++.+++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999988877665
No 224
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.17 E-value=0.0021 Score=64.35 Aligned_cols=29 Identities=45% Similarity=0.557 Sum_probs=24.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
..++|.|||||||||+|+.| +.++.+++.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 35889999999999999999 888876554
No 225
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.17 E-value=0.0026 Score=64.82 Aligned_cols=30 Identities=37% Similarity=0.524 Sum_probs=23.3
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
+..++|.|+|||||||+|+.|++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 467899999999999999999999998766
No 226
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.16 E-value=0.0021 Score=64.38 Aligned_cols=29 Identities=45% Similarity=0.557 Sum_probs=24.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
..++|+|||||||||+|+.| +.++.+++.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 36899999999999999999 888766543
No 227
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.15 E-value=0.0022 Score=68.03 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
.+++|+||||||||++|.++|+.+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999999984
No 228
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.15 E-value=0.0023 Score=67.80 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=27.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
+..++|.|||||||||+|+.||+.++.+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 4679999999999999999999999876544
No 229
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.15 E-value=0.0025 Score=64.07 Aligned_cols=31 Identities=29% Similarity=0.533 Sum_probs=26.9
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
.++|.|+|||||||+|+.|++.++.+++..|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999987765443
No 230
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.15 E-value=0.0029 Score=65.87 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=26.8
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
+..++|.|||||||||+++.|++.++.+++.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~ 45 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLS 45 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 4678999999999999999999999875543
No 231
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.15 E-value=0.0025 Score=66.50 Aligned_cols=31 Identities=32% Similarity=0.725 Sum_probs=27.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
+..++|.||||+||||+|+.|++.++.+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 3579999999999999999999999876554
No 232
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.14 E-value=0.0055 Score=66.69 Aligned_cols=38 Identities=34% Similarity=0.488 Sum_probs=32.8
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFT 853 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~ 853 (1165)
+..++|.|||||||||+|+.|++.++.+++.++...+.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r 69 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFR 69 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHH
Confidence 57899999999999999999999998667777776653
No 233
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.14 E-value=0.0028 Score=66.06 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
+..++|.|||||||||+++.|++.++.+++.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~ 45 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLS 45 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 4679999999999999999999999764443
No 234
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.13 E-value=0.002 Score=66.22 Aligned_cols=37 Identities=30% Similarity=0.522 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
+..+.|+|||||||||++++|+..++...+.++..++
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 3678999999999999999999987767777765543
No 235
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.13 E-value=0.0021 Score=64.85 Aligned_cols=30 Identities=33% Similarity=0.638 Sum_probs=26.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
..++|.|+|||||||+|+.|++.++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999876654
No 236
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.12 E-value=0.0032 Score=67.46 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=26.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
++.++|.||||+||+|.|+.|++.++.+.+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 467888999999999999999999986443
No 237
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.12 E-value=0.0015 Score=66.21 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCCchHHHHHHHH-HhC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAK-LSN 243 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~-~l~ 243 (1165)
|..++|.|||||||||+|+.|++ .++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~ 28 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG 28 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC
Confidence 35789999999999999999998 343
No 238
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.11 E-value=0.0023 Score=66.11 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=25.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
+..++|.|||||||||+|+.|++.++.+++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i 41 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHL 41 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 368999999999999999999999974433
No 239
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.10 E-value=0.0023 Score=65.45 Aligned_cols=30 Identities=17% Similarity=0.332 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
+..++|.|||||||||+|+.|++.++.+++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i 35 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHL 35 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 357999999999999999999999975444
No 240
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.09 E-value=0.002 Score=65.88 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
..++|.|||||||||+++.|++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999886
No 241
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.08 E-value=0.0028 Score=66.69 Aligned_cols=30 Identities=30% Similarity=0.526 Sum_probs=25.7
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
.++|.|||||||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 578999999999999999999997655433
No 242
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.08 E-value=0.0027 Score=66.87 Aligned_cols=30 Identities=27% Similarity=0.532 Sum_probs=25.5
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
.++|+|||||||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 588999999999999999999997654433
No 243
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.07 E-value=0.0026 Score=65.70 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=26.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
+..++|.|||||||||+|+.|++.++.+++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i 41 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHL 41 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 357999999999999999999999986443
No 244
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.07 E-value=0.0031 Score=64.54 Aligned_cols=29 Identities=31% Similarity=0.531 Sum_probs=25.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
..++|.|||||||||+++.|++.++.+++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 56899999999999999999999986543
No 245
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.07 E-value=0.0027 Score=67.43 Aligned_cols=26 Identities=15% Similarity=0.395 Sum_probs=23.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNA 842 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~ 842 (1165)
.++||+||||||||++|.++|+.+..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999999853
No 246
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.07 E-value=0.0023 Score=68.22 Aligned_cols=31 Identities=16% Similarity=0.351 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
+..++|.|||||||||+|+.||+.++.+++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 3689999999999999999999999765443
No 247
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.05 E-value=0.012 Score=62.16 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=38.9
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||+|||++.+.+.+.. ..+ .. .+|..++-.. ...+-+|..| ..|+.+...|+.|+.
T Consensus 87 ~~~vliIDEAq~l~~~~~~--~~e-----~~-rll~~l~~~r---------~~~~~iil~t----q~~~~l~~~lr~ri~ 145 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSA--GSK-----IP-ENVQWLNTHR---------HQGIDIFVLT----QGPKLLDQNLRTLVR 145 (199)
T ss_dssp TTCEEEETTGGGTSBCCCT--TCC-----CC-HHHHGGGGTT---------TTTCEEEEEE----SCGGGBCHHHHTTEE
T ss_pred CceEEEEEChhhhccCccc--cch-----hH-HHHHHHHhcC---------cCCeEEEEEC----CCHHHHhHHHHHHhh
Confidence 4789999999999654321 011 11 2344343211 1112233343 236778889999999
Q ss_pred eeEecCC
Q psy2392 499 IRVELDS 505 (1165)
Q Consensus 499 ~~v~~~~ 505 (1165)
..+.|.+
T Consensus 146 ~~~~l~~ 152 (199)
T 2r2a_A 146 KHYHIAS 152 (199)
T ss_dssp EEEEEEE
T ss_pred eEEEEcC
Confidence 9988876
No 248
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.05 E-value=0.0031 Score=67.60 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEec
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~ 251 (1165)
++.++|.|||||||+|.|+.||+.++.+ +++.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIst 60 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSS 60 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCE--EECH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcH
Confidence 4678899999999999999999999654 4444
No 249
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.05 E-value=0.002 Score=68.33 Aligned_cols=30 Identities=17% Similarity=0.301 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
+..++|.|||||||||+++.||+.++.+++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 368999999999999999999999975443
No 250
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.05 E-value=0.0027 Score=65.00 Aligned_cols=30 Identities=17% Similarity=0.332 Sum_probs=26.3
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
+..++|.|||||||||+|+.|++.++.+++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i 35 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHL 35 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 467899999999999999999999986544
No 251
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.05 E-value=0.0033 Score=63.81 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 253 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~ 253 (1165)
..++|+||||+||||+++.|+..+|.. .++..+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~--~i~~d~ 41 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAA--FLDGDF 41 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCE--EEEGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcE--EEeCcc
Confidence 578999999999999999999998754 444433
No 252
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.05 E-value=0.003 Score=63.59 Aligned_cols=29 Identities=31% Similarity=0.503 Sum_probs=26.2
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
.++|.|+|||||||+|+.|++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48899999999999999999999987664
No 253
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.04 E-value=0.0046 Score=68.83 Aligned_cols=38 Identities=26% Similarity=0.482 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
.+..++|.|||||||||+|+.|++.++..++.+++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 35789999999999999999999998656677775433
No 254
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.02 E-value=0.0027 Score=67.62 Aligned_cols=31 Identities=16% Similarity=0.351 Sum_probs=26.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
+..++|.|||||||||+++.|++.++.+++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 3679999999999999999999999875543
No 255
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.02 E-value=0.0037 Score=66.31 Aligned_cols=28 Identities=39% Similarity=0.605 Sum_probs=24.7
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
.++|.||||+||+|.|+.||+.++.+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 4788999999999999999999987543
No 256
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.99 E-value=0.0029 Score=64.08 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=22.5
Q ss_pred CceEEEEccCCCChhHHHHHHHH-HcC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAK-LSN 841 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~-~l~ 841 (1165)
|..++|.||||+||||+|+.|++ .++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~ 28 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG 28 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC
Confidence 35689999999999999999998 344
No 257
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.98 E-value=0.003 Score=67.68 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
+..++|.|||||||||+|+.||+.++.+++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 3689999999999999999999999865443
No 258
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.98 E-value=0.0025 Score=65.28 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=23.3
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
..++|.|||||||||+++.|++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999886
No 259
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.98 E-value=0.0032 Score=66.27 Aligned_cols=29 Identities=28% Similarity=0.557 Sum_probs=25.3
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
.++|.|||||||||+|+.|++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 30 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIS 30 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 47899999999999999999999876543
No 260
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.96 E-value=0.0039 Score=63.32 Aligned_cols=35 Identities=23% Similarity=0.465 Sum_probs=28.0
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~ 852 (1165)
...++|+||||+||||+++.|++.++..+ ++...+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~--i~~d~~ 42 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAF--LDGDFL 42 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEE--EEGGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEE--EeCccc
Confidence 35789999999999999999999987644 454443
No 261
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.94 E-value=0.0033 Score=67.44 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=27.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
+..++|.|||||||||+|+.||+.++.+++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 3679999999999999999999999876544
No 262
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.94 E-value=0.0034 Score=66.02 Aligned_cols=29 Identities=31% Similarity=0.551 Sum_probs=25.4
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
.++|.|||||||||+|+.|++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 30 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIS 30 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEee
Confidence 47899999999999999999999876553
No 263
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.94 E-value=0.0038 Score=66.29 Aligned_cols=30 Identities=37% Similarity=0.582 Sum_probs=25.5
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEec
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~ 251 (1165)
.++|.||||+||+|.|+.||+.++.+ +++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~--~ist 31 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFV--HIST 31 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE--EEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCe--EEcH
Confidence 57899999999999999999999654 4554
No 264
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.93 E-value=0.0032 Score=68.25 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
|..++|+|||||||||+|+.|++.++.+++
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i 58 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHL 58 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 468999999999999999999999965444
No 265
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.93 E-value=0.0023 Score=67.86 Aligned_cols=30 Identities=17% Similarity=0.301 Sum_probs=26.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
+..++|.|||||||||+++.||+.++.+++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 467999999999999999999999986443
No 266
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.89 E-value=0.0059 Score=68.00 Aligned_cols=37 Identities=27% Similarity=0.481 Sum_probs=30.7
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~ 852 (1165)
+..++|.|||||||||+|+.|++.++..++.+++..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 5788999999999999999999998655677776444
No 267
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.88 E-value=0.0033 Score=66.67 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=26.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
..++|.|||||||||+|+.||+.++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 5799999999999999999999998655543
No 268
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.86 E-value=0.0098 Score=62.77 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=38.7
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||+|||++.+...... + .| ..+ +|.-++-. ....+-+|..|. .|+.+...|.+|+.
T Consensus 87 ~~~vliIDEAq~l~~~~~~--~----~e-~~r-ll~~l~~~---------r~~~~~iil~tq----~~~~l~~~lr~ri~ 145 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSA--G----SK-IPE-NVQWLNTH---------RHQGIDIFVLTQ----GPKLLDQNLRTLVR 145 (199)
T ss_dssp TTCEEEETTGGGTSBCCCT--T----CC-CCH-HHHGGGGT---------TTTTCEEEEEES----CGGGBCHHHHTTEE
T ss_pred CceEEEEEChhhhccCccc--c----ch-hHH-HHHHHHhc---------CcCCeEEEEECC----CHHHHhHHHHHHhh
Confidence 3679999999999654211 0 01 112 33333311 111223344443 36778889999999
Q ss_pred eEEEcCC
Q psy2392 1097 IRVELDS 1103 (1165)
Q Consensus 1097 i~v~l~~ 1103 (1165)
..+.|.+
T Consensus 146 ~~~~l~~ 152 (199)
T 2r2a_A 146 KHYHIAS 152 (199)
T ss_dssp EEEEEEE
T ss_pred eEEEEcC
Confidence 9999887
No 269
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.85 E-value=0.0036 Score=66.35 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=26.6
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
..++|.|||||||||+|+.||+.++.+++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 35 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLS 35 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEe
Confidence 578999999999999999999999876554
No 270
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.81 E-value=0.0039 Score=67.53 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=26.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
+..++|.|||||||||+|+.|++.++.+++
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i 58 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHL 58 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 468999999999999999999999976544
No 271
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.80 E-value=0.0041 Score=65.61 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=25.8
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
.++|.|||||||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 589999999999999999999997655443
No 272
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.77 E-value=0.0047 Score=64.47 Aligned_cols=35 Identities=31% Similarity=0.491 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
+..+.|+||+||||||+++.|++.+|. +.++...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~--~~i~~d~~ 63 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGL--EFAEADAF 63 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCC--EEEEGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC--eEEccccc
Confidence 368999999999999999999999964 44555443
No 273
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.75 E-value=0.0071 Score=61.74 Aligned_cols=36 Identities=19% Similarity=0.423 Sum_probs=31.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 254 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~ 254 (1165)
..+.|+|++||||||+++.|++.+ |.+++.++...+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 578999999999999999999998 888888875443
No 274
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.74 E-value=0.0046 Score=65.23 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=25.6
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
.++|.|||||||||+|+.|++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~ 30 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS 30 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 47899999999999999999999876554
No 275
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.72 E-value=0.0083 Score=61.22 Aligned_cols=36 Identities=19% Similarity=0.399 Sum_probs=31.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 851 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se 851 (1165)
...+.|.|++||||||+++.|++.+ +.+++.+|...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 3578899999999999999999998 88888887543
No 276
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.71 E-value=0.0066 Score=63.39 Aligned_cols=35 Identities=31% Similarity=0.491 Sum_probs=28.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~ 852 (1165)
+..+.|.||+||||||+++.|++.+|. +.++...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~--~~i~~d~~ 63 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGL--EFAEADAF 63 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCC--EEEEGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC--eEEccccc
Confidence 367899999999999999999999975 45555544
No 277
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.68 E-value=0.0058 Score=69.23 Aligned_cols=37 Identities=32% Similarity=0.617 Sum_probs=32.0
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~ 852 (1165)
+..++++||||||||++|+.||+.++.+++.+|.-.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qv 41 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALI 41 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhh
Confidence 3578999999999999999999999988888876543
No 278
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.67 E-value=0.005 Score=69.74 Aligned_cols=36 Identities=33% Similarity=0.624 Sum_probs=31.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 253 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~ 253 (1165)
+..++++||||||||++|+.||+.++..++.+|.-.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 357999999999999999999999998888777644
No 279
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.66 E-value=0.0066 Score=69.53 Aligned_cols=30 Identities=27% Similarity=0.585 Sum_probs=27.4
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
.+++|+|||||||||++++||+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 579999999999999999999999888754
No 280
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.64 E-value=0.0054 Score=62.68 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=25.9
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCC---CceEEec
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNA---PFIKIEA 251 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~---~~i~ld~ 251 (1165)
.++|.|||||||||+|+.|++.++. ++..++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~ 37 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC
Confidence 5899999999999999999999852 3444443
No 281
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.62 E-value=0.0047 Score=64.48 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
+..++|.|+|||||||+++.|++.++.+++.++
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~ 42 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK 42 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 468999999999999999999999876666554
No 282
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.60 E-value=0.0077 Score=61.66 Aligned_cols=31 Identities=26% Similarity=0.191 Sum_probs=27.2
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh---CCCceEEe
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLS---NAPFIKIE 250 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld 250 (1165)
.+.|.|+|||||||+++.|++.+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999998 77777665
No 283
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.59 E-value=0.009 Score=62.34 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=29.2
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 254 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~ 254 (1165)
+..+.|.||+||||||++++|+..+ |...+.++...+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 3688999999999999999999998 444346665444
No 284
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.59 E-value=0.0066 Score=64.15 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=25.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPF 246 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~ 246 (1165)
..+.|+|||||||||+++.|++.++.++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~ 33 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHL 33 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 5799999999999999999999997543
No 285
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.57 E-value=0.0071 Score=63.91 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=25.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
..+.|.|||||||||+++.|++.++.+++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 57899999999999999999999986544
No 286
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.56 E-value=0.0091 Score=61.14 Aligned_cols=31 Identities=26% Similarity=0.191 Sum_probs=27.5
Q ss_pred eEEEEccCCCChhHHHHHHHHHc---CCCeEEEe
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLS---NAPFIKIE 848 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~ 848 (1165)
.+.|.|+|||||||+++.|++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999998 88887765
No 287
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.54 E-value=0.0059 Score=66.75 Aligned_cols=32 Identities=22% Similarity=0.515 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
..+.|+||+||||||+++.||+.++.+|+..+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 68999999999999999999999987666544
No 288
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.49 E-value=0.01 Score=64.83 Aligned_cols=38 Identities=29% Similarity=0.461 Sum_probs=31.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHH---cCCCeEEEecCCcc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKL---SNAPFIKIEATKFT 853 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~---l~~~fi~l~~se~~ 853 (1165)
+..++|.|+|||||||+|+.|++. .+.+++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 367899999999999999999998 67777766654443
No 289
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.46 E-value=0.0056 Score=69.68 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=31.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
..+++.||||||||+|+..||+.++.+++..|.-.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qv 76 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQV 76 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccccc
Confidence 579999999999999999999999888887776543
No 290
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.45 E-value=0.008 Score=62.08 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=25.1
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
.+.|.|+|||||||+++.|++.++.+++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 4789999999999999999999987654
No 291
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.45 E-value=0.0071 Score=62.47 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=25.0
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
.+.|.|+|||||||+++.|++.++.+++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 5789999999999999999999987554
No 292
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.44 E-value=0.0097 Score=65.01 Aligned_cols=37 Identities=30% Similarity=0.476 Sum_probs=29.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHH---hCCCceEEecccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKL---SNAPFIKIEATKF 254 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~---l~~~~i~ld~s~~ 254 (1165)
+..++|+|+|||||||+|+.|++. .|.+++.++...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 358999999999999999999998 5677765565433
No 293
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.43 E-value=0.012 Score=61.25 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=29.0
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~ 852 (1165)
+..+.|.||+||||||++++|+..+ |...+.++...+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 3678899999999999999999998 544346665444
No 294
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.43 E-value=0.0056 Score=63.78 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=25.2
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
.+.++||+||||||+++.|++ +|.+++..|
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 688999999999999999999 875554443
No 295
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.43 E-value=0.0069 Score=68.95 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=30.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 851 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se 851 (1165)
..++++||||||||+|+..||+.++.+++..|.-.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 57899999999999999999999998887776653
No 296
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.43 E-value=0.01 Score=64.08 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
+..+.|+|||||||||+++.|++.++...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 468999999999999999999999976443
No 297
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.40 E-value=0.0062 Score=63.63 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
+..++|.|+|||||||+++.|++.++..++.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~ 41 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE 41 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 468999999999999999999999865555443
No 298
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.40 E-value=0.017 Score=59.42 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=26.3
Q ss_pred EEEEccCCCChhHHHHHHHHHc---CCCeEEEec
Q psy2392 819 ILMIGPTGVGKTEIARRLAKLS---NAPFIKIEA 849 (1165)
Q Consensus 819 iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~ 849 (1165)
+.|.||+||||||+++.|++.+ +.+++..+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 7889999999999999999999 888775543
No 299
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.39 E-value=0.0064 Score=63.30 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=24.3
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
.+.+.||+||||||+++.|++ ++.+++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~ 30 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLD 30 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEE
Confidence 588999999999999999999 8765544
No 300
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.37 E-value=0.0065 Score=64.72 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=24.0
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCc
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPF 246 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~ 246 (1165)
.++|.|||||||||+|+.|++.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~ 28 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAH 28 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 578999999999999999999997543
No 301
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.37 E-value=0.0087 Score=62.14 Aligned_cols=30 Identities=30% Similarity=0.602 Sum_probs=26.3
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
.+.+.||+||||||+++.||+.++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 789999999999999999999998665543
No 302
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.35 E-value=0.01 Score=66.68 Aligned_cols=37 Identities=35% Similarity=0.649 Sum_probs=31.6
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~ 852 (1165)
+.-+++.||||||||+||..||+.++.+++..|.-.+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 4678899999999999999999999887777776554
No 303
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.34 E-value=0.011 Score=67.85 Aligned_cols=31 Identities=26% Similarity=0.577 Sum_probs=27.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
.+++|+||||||||+++++||+.++.+|+.+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l 55 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHTF 55 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeeee
Confidence 5799999999999999999999998888553
No 304
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.32 E-value=0.0078 Score=65.78 Aligned_cols=31 Identities=23% Similarity=0.503 Sum_probs=27.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKI 847 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l 847 (1165)
..+.|+||+||||||+++.||+.++.+|+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 5799999999999999999999999866553
No 305
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.32 E-value=0.0066 Score=64.68 Aligned_cols=28 Identities=32% Similarity=0.509 Sum_probs=24.5
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
.++|.|||||||||+++.|++.++.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i 29 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHI 29 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 4789999999999999999999986443
No 306
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.31 E-value=0.008 Score=62.29 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh-CCCceEEe
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS-NAPFIKIE 250 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l-~~~~i~ld 250 (1165)
+..+.|.|||||||||+++.|++.+ +.+++.++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 3679999999999999999999998 45665543
No 307
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.29 E-value=0.0073 Score=62.44 Aligned_cols=30 Identities=30% Similarity=0.454 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
+..+.+.|++||||||+++.|++. |.+++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 468999999999999999999997 655443
No 308
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.29 E-value=0.0062 Score=62.21 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=22.4
Q ss_pred eEEEEccCCCChhHHHHHHHHHcC
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
.++|.|||||||||+++.|++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999885
No 309
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.27 E-value=0.01 Score=61.54 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=28.0
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc-CCCeEEEe
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS-NAPFIKIE 848 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l-~~~fi~l~ 848 (1165)
+..+.|.|||||||||+++.|++.+ +.+++.++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 3578999999999999999999998 56676654
No 310
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.27 E-value=0.0094 Score=67.06 Aligned_cols=37 Identities=35% Similarity=0.649 Sum_probs=32.0
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
+.-+++.||||||||+||..||+.++..++..|.-.+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 4578999999999999999999999888777776554
No 311
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.24 E-value=0.0063 Score=63.50 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=27.0
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 847 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l 847 (1165)
+..++|.|+|||||||+++.|++.++.+++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 46789999999999999999999987655444
No 312
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.22 E-value=0.012 Score=63.51 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=25.7
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCe
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPF 844 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~f 844 (1165)
+..++|.|||||||||+++.|++.++...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 46799999999999999999999998643
No 313
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.22 E-value=0.0076 Score=62.92 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=24.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
..+.|+||+||||||+++.|++ +|.+++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 3688999999999999999998 7766553
No 314
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.20 E-value=0.012 Score=60.47 Aligned_cols=31 Identities=26% Similarity=0.232 Sum_probs=25.9
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh---CCCceEEe
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLS---NAPFIKIE 250 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld 250 (1165)
-+.|.||+||||||+++.|++.+ |.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 37899999999999999999999 87776543
No 315
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.19 E-value=0.01 Score=61.61 Aligned_cols=29 Identities=31% Similarity=0.643 Sum_probs=26.1
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
.+.+.||+||||||+++.|++.++.+++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 68899999999999999999999976654
No 316
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.19 E-value=0.011 Score=61.35 Aligned_cols=27 Identities=26% Similarity=0.211 Sum_probs=24.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAP 245 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~ 245 (1165)
..++|.|||||||||+|+.|++.++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 578999999999999999999999764
No 317
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.19 E-value=0.011 Score=64.09 Aligned_cols=29 Identities=31% Similarity=0.568 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPF 246 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~ 246 (1165)
+..+.+.|||||||||+++.||+.++.++
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~ 37 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARY 37 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 46899999999999999999999997543
No 318
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.15 E-value=0.0084 Score=62.57 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=24.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
..+.|.||+||||||+++.+++ +|.+++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 3578999999999999999998 7776653
No 319
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.13 E-value=0.0095 Score=61.59 Aligned_cols=30 Identities=30% Similarity=0.454 Sum_probs=25.8
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
+..+.+.|++||||||+++.|++. +.+++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 467999999999999999999998 765543
No 320
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=95.09 E-value=0.057 Score=50.09 Aligned_cols=86 Identities=15% Similarity=0.074 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhcccCC-
Q psy2392 505 SLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNN- 583 (1165)
Q Consensus 505 ~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~~~- 583 (1165)
.++.++-..|.+ +.|+..+.+......-++.|+++|+..|++.... ..|.|.|.+.|++++..+....-.
T Consensus 2 GYt~~EK~~IAk---~~LiPkql~~~GL~~~~~~i~d~al~~iI~~YTR------EaGVRnLer~i~~i~RK~a~~i~~~ 72 (94)
T 1qzm_A 2 GYTEDEKLNIAK---RHLLPKQIERNALKKGELTVDDSAIIGIIRYYTR------EAGVRGLEREISKLCRKAVKQLLLD 72 (94)
T ss_dssp CCCHHHHHHHHH---HTHHHHHHHHTTCCTTTEEECHHHHHHHHHHHCC------CSSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHH---HhccHHHHHHhCCChhhceECHHHHHHHHHHhcc------cccchHHHHHHHHHHHHHHHHHHHc
Confidence 468888889986 6677666555555555799999999999987654 789999999999888777665432
Q ss_pred ---CeeEEccccccccccc
Q psy2392 584 ---ISLLVDADYVNSRLGD 599 (1165)
Q Consensus 584 ---~~~~i~~~~v~~~~~~ 599 (1165)
..++||.+.+.+.|+.
T Consensus 73 ~~~~~v~v~~~~l~~~LG~ 91 (94)
T 1qzm_A 73 KSLKHIEINGDNLHDYLGV 91 (94)
T ss_dssp TTCCCEEECTTTTHHHHCS
T ss_pred CCCCCeeECHHHHHHHcCC
Confidence 2388999988888774
No 321
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.09 E-value=0.019 Score=59.66 Aligned_cols=27 Identities=26% Similarity=0.211 Sum_probs=24.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAP 843 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~ 843 (1165)
..++|.|||||||||+++.|++.++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 578999999999999999999998763
No 322
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.08 E-value=0.013 Score=63.29 Aligned_cols=29 Identities=31% Similarity=0.568 Sum_probs=25.8
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCe
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPF 844 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~f 844 (1165)
+..+.+.|||||||||+++.|++.++.++
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~ 37 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARY 37 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 45799999999999999999999998654
No 323
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.00 E-value=0.014 Score=63.18 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=31.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce--------EEeccccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI--------KIEATKFT 255 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i--------~ld~s~~~ 255 (1165)
+..+.+.|||||||||+|+.|++.++.+++ .+++.+|.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 467999999999999999999999987642 57776653
No 324
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.98 E-value=0.0083 Score=62.65 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=25.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
+..++|.|+|||||||+++.|++.++..++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~ 39 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHR 39 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCc
Confidence 4678999999999999999999988644433
No 325
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.92 E-value=0.012 Score=66.28 Aligned_cols=36 Identities=36% Similarity=0.484 Sum_probs=30.2
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
.-+++.||||||||+||..||+.++..++..|.-.+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~Qv 39 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQV 39 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccc
Confidence 578899999999999999999999877666665543
No 326
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.85 E-value=0.023 Score=58.24 Aligned_cols=34 Identities=32% Similarity=0.392 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC---CCceEEec
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN---APFIKIEA 251 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~---~~~i~ld~ 251 (1165)
+..++|+|+|||||||+++.|++.++ .++..++.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 46889999999999999999999983 33444543
No 327
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.83 E-value=0.012 Score=61.65 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=26.2
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
..+.++|++||||||+++.|++.+|.+++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 4688999999999999999999988655443
No 328
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.76 E-value=0.017 Score=62.69 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=31.4
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCe--------EEEecCCcc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPF--------IKIEATKFT 853 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~f--------i~l~~se~~ 853 (1165)
+..+.+.|||||||||+|+.|++.++.++ ..+++.++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 46789999999999999999999998763 357776654
No 329
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.74 E-value=0.015 Score=65.56 Aligned_cols=35 Identities=37% Similarity=0.497 Sum_probs=29.3
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 851 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se 851 (1165)
.-+++.||||||||+||..||+.++..++..|.-.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~Q 38 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQ 38 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCccc
Confidence 56888999999999999999999987666666543
No 330
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.72 E-value=0.015 Score=60.93 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
+..++|+|||||||||+++.|++.++
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 36789999999999999999999884
No 331
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.69 E-value=0.013 Score=61.67 Aligned_cols=31 Identities=32% Similarity=0.537 Sum_probs=26.6
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
+..+.++||+|||||++++.|++.+|.+++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 3578999999999999999999999865543
No 332
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.68 E-value=0.014 Score=61.15 Aligned_cols=30 Identities=23% Similarity=0.311 Sum_probs=26.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
..+.++|++||||||+++.+++.+|.+++.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 567889999999999999999998876554
No 333
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.66 E-value=0.014 Score=61.54 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=25.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
..+.|.|++||||||+++.|++ +|.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 5789999999999999999998 77654443
No 334
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.58 E-value=0.021 Score=62.06 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=25.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
..+.+.||+||||||+++.|++.++.+++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 57889999999999999999999987543
No 335
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.57 E-value=0.018 Score=59.54 Aligned_cols=24 Identities=29% Similarity=0.645 Sum_probs=22.5
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
.+.|+||+|||||||.+.|+..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999986
No 336
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.56 E-value=0.012 Score=61.43 Aligned_cols=29 Identities=38% Similarity=0.382 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh-CCCce
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS-NAPFI 247 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l-~~~~i 247 (1165)
..+.++|||||||||+++.|++.+ +.+++
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 578899999999999999999987 44333
No 337
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.56 E-value=0.021 Score=62.13 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=25.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPF 246 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~ 246 (1165)
..+.+.||+||||||+++.||+.+|.++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 5789999999999999999999997543
No 338
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.54 E-value=0.016 Score=61.02 Aligned_cols=30 Identities=33% Similarity=0.552 Sum_probs=26.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
..+.+.||+|||||++++.|++.++.+++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 568999999999999999999999876543
No 339
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.52 E-value=0.018 Score=60.13 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=23.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
+..++|+|||||||||+++.|++.++
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 36789999999999999999999885
No 340
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.51 E-value=0.017 Score=60.93 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=25.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
..+.|.|++||||||+++.|++ ++.+++.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 5789999999999999999998 7765544
No 341
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.47 E-value=0.021 Score=58.64 Aligned_cols=25 Identities=28% Similarity=0.585 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
.-+.|+||||||||||++.|+..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999999874
No 342
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.45 E-value=0.013 Score=64.93 Aligned_cols=25 Identities=40% Similarity=0.493 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
|..++|.|||||||||+|+.|++.+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC
Confidence 3578999999999999999999964
No 343
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.44 E-value=0.038 Score=75.50 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=28.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~ 852 (1165)
+.+++|+||||||||+||.+++... +.....+++.+.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 5799999999999999999998776 444555555543
No 344
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.42 E-value=0.023 Score=58.29 Aligned_cols=25 Identities=28% Similarity=0.585 Sum_probs=22.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
.-+.|+||+|||||||++.|+..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999999874
No 345
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.42 E-value=0.015 Score=60.71 Aligned_cols=34 Identities=35% Similarity=0.382 Sum_probs=26.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc-CCCeEEEecCCc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS-NAPFIKIEATKF 852 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l-~~~fi~l~~se~ 852 (1165)
..+.+.|||||||||+++.|++.+ +.+ .++...+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~--~i~~D~~ 56 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCS--VISQDDF 56 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEE--EEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcE--EEeCCcc
Confidence 567899999999999999999987 443 4444443
No 346
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.40 E-value=0.02 Score=59.10 Aligned_cols=26 Identities=27% Similarity=0.579 Sum_probs=23.3
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCC
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAP 843 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~ 843 (1165)
.+.|+||+|||||||.+.++..++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47899999999999999999999743
No 347
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.40 E-value=0.034 Score=56.97 Aligned_cols=34 Identities=32% Similarity=0.392 Sum_probs=27.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC---CCeEEEec
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN---APFIKIEA 849 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~---~~fi~l~~ 849 (1165)
+..++|.|+|||||||+++.|++.++ .++..++.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 46789999999999999999999884 33455554
No 348
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.37 E-value=0.02 Score=61.31 Aligned_cols=30 Identities=27% Similarity=0.435 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
+..+.|.||+||||||+++.|++.+|.+++
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~ 45 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYL 45 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 368999999999999999999999985543
No 349
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.31 E-value=0.014 Score=64.51 Aligned_cols=29 Identities=38% Similarity=0.385 Sum_probs=24.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc-CCCeE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS-NAPFI 845 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l-~~~fi 845 (1165)
..++|.|||||||||+|+.|++.+ +.+++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 568999999999999999999974 54333
No 350
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.25 E-value=0.02 Score=59.25 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
+..+.|+|||||||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3578999999999999999999987
No 351
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.21 E-value=0.021 Score=65.14 Aligned_cols=33 Identities=36% Similarity=0.504 Sum_probs=27.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEec
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~ 251 (1165)
..+++.||||||||++|+.||+.++..++..|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 478999999999999999999999865555554
No 352
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.21 E-value=0.028 Score=59.09 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC----CCceEEecc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN----APFIKIEAT 252 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~----~~~i~ld~s 252 (1165)
+..++|.|+|||||||+++.|++.++ .+++.++..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 36789999999999999999999874 456666643
No 353
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.20 E-value=0.03 Score=60.02 Aligned_cols=30 Identities=27% Similarity=0.435 Sum_probs=26.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
+..+.|.||+||||||+++.|++.++.+++
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~ 45 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYL 45 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 467899999999999999999999987554
No 354
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.19 E-value=0.027 Score=65.49 Aligned_cols=33 Identities=36% Similarity=0.580 Sum_probs=28.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEec
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 849 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~ 849 (1165)
.-+++.||||+|||+||..||+.++..++..|.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 568899999999999999999999876666554
No 355
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.17 E-value=0.026 Score=58.45 Aligned_cols=33 Identities=33% Similarity=0.512 Sum_probs=26.2
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 253 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~ 253 (1165)
.-+.|.||+||||||+++.|+..+. -+.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~~~ 40 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA--EIKISISH 40 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS--SEEECCCE
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC--CeEEecee
Confidence 5788999999999999999999863 44454433
No 356
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.13 E-value=0.022 Score=59.95 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
+.-+.|+||+|+||||+++.|++.+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35789999999999999999999874
No 357
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.12 E-value=0.078 Score=59.42 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=22.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
+..+.|+||+||||||+++.+|..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999999987
No 358
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.11 E-value=0.051 Score=74.33 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccc
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~ 253 (1165)
++.+++|+||||||||+||.+++... |.....+++.+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1465 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc
Confidence 35799999999999999999998776 44555555544
No 359
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.09 E-value=0.033 Score=58.50 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=28.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC----CCeEEEecC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN----APFIKIEAT 850 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~----~~fi~l~~s 850 (1165)
+..++|.|+|||||||+++.|++.++ .+++.++..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 35788999999999999999999874 556777643
No 360
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.08 E-value=0.072 Score=55.57 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~ 253 (1165)
+..+.+.||+||||||+++.|+..+ +.+++.++...
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 3678999999999999999999987 44555554443
No 361
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.08 E-value=0.057 Score=60.56 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
+..+.|+||+||||||+++.||..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999999987
No 362
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.07 E-value=0.024 Score=64.61 Aligned_cols=33 Identities=36% Similarity=0.504 Sum_probs=27.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEec
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 849 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~ 849 (1165)
..+++.||||+|||++|+.||+.++..++..|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468899999999999999999999865555543
No 363
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.07 E-value=0.025 Score=62.64 Aligned_cols=30 Identities=30% Similarity=0.357 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
+..+.++|+|||||||+|+.|+ .+|.+++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 4679999999999999999999 57655443
No 364
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.05 E-value=0.034 Score=65.84 Aligned_cols=41 Identities=24% Similarity=0.461 Sum_probs=34.5
Q ss_pred cchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 187 GQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 187 GQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
+|.+|+..+...+... .+.+++.||||||||+++..++..+
T Consensus 29 ~Q~~av~~~~~~i~~~---------------~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEK---------------KHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHHHSS---------------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC---------------CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 7888888877777542 2599999999999999999999888
No 365
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.04 E-value=0.026 Score=65.62 Aligned_cols=36 Identities=33% Similarity=0.541 Sum_probs=30.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
..+++.||||||||+||..||+.++..++..|.-.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~Qv 38 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQV 38 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccce
Confidence 578899999999999999999999877666665443
No 366
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.97 E-value=0.031 Score=57.87 Aligned_cols=33 Identities=33% Similarity=0.512 Sum_probs=26.1
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 851 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se 851 (1165)
..+.|.||+||||||+++.|+..+. -+.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~~~ 40 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA--EIKISISH 40 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS--SEEECCCE
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC--CeEEecee
Confidence 4678999999999999999999863 34554433
No 367
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.96 E-value=0.025 Score=58.08 Aligned_cols=24 Identities=42% Similarity=0.692 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..++|.||+|+||||+++.|+..+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 467899999999999999999855
No 368
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.95 E-value=0.025 Score=58.58 Aligned_cols=24 Identities=33% Similarity=0.612 Sum_probs=22.2
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
..+.|.||+||||||+++.|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 578899999999999999999987
No 369
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.92 E-value=0.094 Score=54.66 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=28.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 851 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se 851 (1165)
+..+.+.||+||||||+++.++..+ +.+.+.++...
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 3678899999999999999999986 45555554443
No 370
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.91 E-value=0.029 Score=57.60 Aligned_cols=34 Identities=35% Similarity=0.511 Sum_probs=25.4
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 851 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se 851 (1165)
..++|.||+|+||||+++.|++..+. .+.++..+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~ 36 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDI 36 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC-eEEEcccc
Confidence 35789999999999999999986542 24444433
No 371
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.90 E-value=0.032 Score=58.50 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
+..+.+.||+|+|||||+++|+..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 36788999999999999999999984
No 372
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.89 E-value=0.026 Score=62.49 Aligned_cols=30 Identities=30% Similarity=0.357 Sum_probs=24.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
+..+.+.|+|||||||+|+.|+ .+|.+++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 4678999999999999999999 57765443
No 373
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.84 E-value=0.029 Score=57.81 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
..+.|.||+|+||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999999874
No 374
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.81 E-value=0.028 Score=59.05 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=23.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
+.-+.|.||+|+||||+++.|++.+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35688999999999999999999875
No 375
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.81 E-value=0.019 Score=67.33 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=25.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
+.-++++|||||||||+|+.|++.++..++
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 568999999999999999999998865444
No 376
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.79 E-value=0.023 Score=59.35 Aligned_cols=25 Identities=36% Similarity=0.364 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
..+.+.||+||||||+++.|+..++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999999986
No 377
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.78 E-value=0.032 Score=57.44 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=22.3
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
..+.|.||+||||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999999874
No 378
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.70 E-value=0.046 Score=64.74 Aligned_cols=41 Identities=24% Similarity=0.461 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc
Q psy2392 785 GQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 785 GQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
+|.+|+..+...+... .+.+++.||||||||+++..++..+
T Consensus 29 ~Q~~av~~~~~~i~~~---------------~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEK---------------KHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHHHSS---------------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC---------------CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 7888888887776532 2489999999999999999999887
No 379
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.69 E-value=0.034 Score=64.32 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
+..++++||||+||||++++|+..++..++
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~ 198 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCGGKAL 198 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCcEE
Confidence 368999999999999999999998865443
No 380
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.66 E-value=0.035 Score=64.29 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=25.7
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
+..++++||||+||||++++++..++..++
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~ 198 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCGGKAL 198 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCcEE
Confidence 368899999999999999999998865443
No 381
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.63 E-value=0.04 Score=58.04 Aligned_cols=27 Identities=30% Similarity=0.585 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
+..-+.|.||+|||||||+++|++.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346889999999999999999999874
No 382
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.63 E-value=0.08 Score=60.07 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
++..+.|+||+||||||+++.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999987
No 383
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.61 E-value=0.028 Score=58.75 Aligned_cols=26 Identities=38% Similarity=0.447 Sum_probs=23.6
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
+..+.+.||+||||||+++.|+..++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999999987
No 384
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.55 E-value=0.049 Score=57.25 Aligned_cols=29 Identities=28% Similarity=0.309 Sum_probs=26.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
..+.+.||+|||||++++.||+.+|.+|+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 46889999999999999999999999876
No 385
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.53 E-value=0.16 Score=56.96 Aligned_cols=26 Identities=38% Similarity=0.613 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
++..++++||+||||||++..||..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 34689999999999999999999887
No 386
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.53 E-value=0.041 Score=57.70 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.3
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
...+.+.||+|+|||||+++|+..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35788999999999999999999985
No 387
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.53 E-value=0.034 Score=58.07 Aligned_cols=25 Identities=24% Similarity=0.659 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
..+.|+||+|+|||||.+.|+..+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999999874
No 388
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.51 E-value=0.05 Score=66.81 Aligned_cols=36 Identities=19% Similarity=0.399 Sum_probs=31.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~ 253 (1165)
+..++|+|+|||||||+|++|++.+ +.+++.+|.-.
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 4689999999999999999999999 88998887543
No 389
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.47 E-value=0.14 Score=57.86 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecc
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEAT 252 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s 252 (1165)
++..++++||+|+||||++..||..+ +....-+++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34689999999999999999999887 4444545543
No 390
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.46 E-value=0.095 Score=61.67 Aligned_cols=37 Identities=30% Similarity=0.346 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccc
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~ 253 (1165)
++..++++||+|+||||++..||..+ +.....+++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 35789999999999999999999888 55555555543
No 391
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.45 E-value=0.045 Score=57.54 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=27.5
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
..+.+.||+|||||++++.||+.+|.+|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 478999999999999999999999988773
No 392
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.41 E-value=0.12 Score=61.03 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccc
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~ 253 (1165)
+|..++++||||+||||++..||..+ |.....+++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 36799999999999999999999888 55556666544
No 393
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.38 E-value=0.12 Score=59.36 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=23.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
+..++|+||+||||||+++.||..+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4678899999999999999999987
No 394
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.35 E-value=0.063 Score=56.54 Aligned_cols=26 Identities=31% Similarity=0.621 Sum_probs=23.3
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
..-+.|.||+|||||||++.|++.+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46788999999999999999999875
No 395
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.35 E-value=0.022 Score=66.73 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=25.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
+.-++++|||||||||+|+.|++.++..++
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 567899999999999999999998876443
No 396
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.27 E-value=0.19 Score=56.34 Aligned_cols=34 Identities=32% Similarity=0.499 Sum_probs=26.7
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEec
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEA 849 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~ 849 (1165)
+..++++||+||||||++..+|..+ +.....+++
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 5678999999999999999999887 333444444
No 397
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.26 E-value=0.14 Score=58.03 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=23.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
+..+.|+||+||||||+++.||..+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5788999999999999999999987
No 398
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.24 E-value=0.12 Score=57.82 Aligned_cols=34 Identities=35% Similarity=0.521 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh----CCCceEEec
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS----NAPFIKIEA 251 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l----~~~~i~ld~ 251 (1165)
+..++|+||+|+||||++..||..+ |.....+++
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4789999999999999999999877 334444444
No 399
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.22 E-value=0.065 Score=65.86 Aligned_cols=36 Identities=19% Similarity=0.399 Sum_probs=31.8
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 851 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se 851 (1165)
+..++|.|+||+||||+|+.|++.+ +.+++.+|.-.
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 4679999999999999999999999 89999887543
No 400
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.17 E-value=0.043 Score=57.34 Aligned_cols=25 Identities=24% Similarity=0.659 Sum_probs=22.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
..+.|+||+|+|||||.+.|+..+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5689999999999999999999874
No 401
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.17 E-value=0.096 Score=60.16 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
+..+.|+||+||||||+++.||..+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4689999999999999999999987
No 402
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.11 E-value=0.2 Score=56.55 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=27.8
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEAT 850 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~s 850 (1165)
+..++++||+|+||||++..||..+ +.....+++.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5688999999999999999999887 4445555553
No 403
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.05 E-value=0.035 Score=58.59 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=29.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
...++|.||||+|||+||..|++..+ +++..|...+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v 69 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDV 69 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhhe
Confidence 36799999999999999999998876 6666666554
No 404
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.99 E-value=0.051 Score=56.67 Aligned_cols=27 Identities=30% Similarity=0.604 Sum_probs=22.9
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCc
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPF 246 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~ 246 (1165)
-++|.||+|+|||||++.|.+.....|
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 378999999999999999988875433
No 405
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.92 E-value=0.06 Score=56.13 Aligned_cols=26 Identities=31% Similarity=0.639 Sum_probs=22.7
Q ss_pred EEEEccCCCChhHHHHHHHHHcCCCe
Q psy2392 819 ILMIGPTGVGKTEIARRLAKLSNAPF 844 (1165)
Q Consensus 819 iLL~GPpG~GKT~lAk~lA~~l~~~f 844 (1165)
++|.||+|+|||||++.|.+.....|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 88999999999999999988875444
No 406
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.90 E-value=0.057 Score=56.56 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
.-+.|.||+|||||||.++|+..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5788999999999999999999984
No 407
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.82 E-value=0.091 Score=54.98 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..++++||||+|||++++.++..+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999765
No 408
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.81 E-value=0.12 Score=61.75 Aligned_cols=25 Identities=48% Similarity=0.667 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
+..++|+||+||||||+++.||..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 4688999999999999999999987
No 409
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.75 E-value=0.065 Score=57.77 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=25.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
..+-|.|||||||||+|+.|++.++.+++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~i 37 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQI 37 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCee
Confidence 46788999999999999999999976554
No 410
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.75 E-value=0.045 Score=57.81 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=29.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~ 852 (1165)
...++|.||||+|||++|..|++..+ +++..|...+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v 69 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDV 69 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhhe
Confidence 36799999999999999999999876 6666555444
No 411
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.75 E-value=0.083 Score=55.03 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEecc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEAT 252 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s 252 (1165)
..++++||||+|||++++.++...+.+.+.++..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 5789999999999999999998445555555543
No 412
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.74 E-value=0.063 Score=56.20 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=22.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
..+.|.||+|||||||.++|+..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4678999999999999999999984
No 413
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.71 E-value=0.17 Score=59.48 Aligned_cols=36 Identities=31% Similarity=0.368 Sum_probs=28.8
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 851 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se 851 (1165)
+..++++||+|+||||++..||..+ +.....+++..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5788999999999999999999887 55555555543
No 414
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.68 E-value=0.1 Score=54.39 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=27.1
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEecC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEAT 850 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~s 850 (1165)
..++++||||+|||++++.++...+.+.+.++..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 5689999999999999999998445555666554
No 415
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.67 E-value=0.057 Score=57.30 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..+.|+||+|||||||+++|+..+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578899999999999999999987
No 416
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.51 E-value=0.17 Score=60.38 Aligned_cols=25 Identities=48% Similarity=0.667 Sum_probs=22.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
+..++|+||+||||||+++.|+..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 4678899999999999999999887
No 417
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.44 E-value=0.067 Score=56.75 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=22.2
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
..+.|+||+|||||||+++|+..+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 568899999999999999999987
No 418
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.43 E-value=0.082 Score=56.99 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=25.2
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
-.+-|.||||+||||+|+.|++.++.+++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~i 37 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQI 37 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCee
Confidence 35678899999999999999999987655
No 419
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.39 E-value=0.31 Score=57.46 Aligned_cols=37 Identities=27% Similarity=0.408 Sum_probs=30.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~ 852 (1165)
|..++++||||+||||++..||..+ +.....+++..+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 6789999999999999999999887 555666666543
No 420
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.39 E-value=0.033 Score=58.04 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
-+.|.||+||||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999985
No 421
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.34 E-value=0.13 Score=53.79 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.4
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
..++++||||+|||++++.++..+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999665
No 422
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.32 E-value=0.072 Score=59.33 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC---CCceEEeccccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN---APFIKIEATKFT 255 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~---~~~i~ld~s~~~ 255 (1165)
.-+.+.||+||||||+|+.|++.++ ..+..+++..|.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 4789999999999999999999875 445667766653
No 423
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.29 E-value=0.15 Score=56.67 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.6
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
+..+.+.||+||||||+++.|+..++
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 46788999999999999999999985
No 424
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.28 E-value=0.068 Score=54.35 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=18.2
Q ss_pred CceEEEEccCCCChhHHHHHH
Q psy2392 816 PKNILMIGPTGVGKTEIARRL 836 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~l 836 (1165)
..-+.|+||+|||||||++++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 356889999999999999973
No 425
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.25 E-value=0.072 Score=55.88 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..+.++||+|||||||++.++..+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999865
No 426
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.22 E-value=0.08 Score=53.85 Aligned_cols=20 Identities=30% Similarity=0.684 Sum_probs=18.1
Q ss_pred cEEEEEcCCCCCchHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRL 238 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~l 238 (1165)
.-+.++||+|||||||++++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999974
No 427
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.16 E-value=0.089 Score=59.05 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
+..+.++||+||||||+++.||..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4689999999999999999999988
No 428
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.15 E-value=0.042 Score=57.24 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.3
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCC
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNA 842 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~ 842 (1165)
-+.|.||+||||||+++.|++.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3788999999999999999999853
No 429
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.14 E-value=0.071 Score=55.91 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
..+.++||+|||||||++.++..+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999865
No 430
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.01 E-value=0.27 Score=54.96 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEAT 252 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s 252 (1165)
+..++++||+|+||||++..||..+ +.....+++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 5688899999999999999999887 4555555553
No 431
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.98 E-value=0.086 Score=57.81 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..++++||+||||||+.++++..+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC
Confidence 678999999999999999999987
No 432
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.98 E-value=0.62 Score=55.19 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
...++|+||||||||+|++.++...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhh
Confidence 3689999999999999999998765
No 433
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.97 E-value=0.089 Score=56.40 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNA 244 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~ 244 (1165)
..-+.|.|||||||||+++.|++.++.
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 357899999999999999999999964
No 434
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.96 E-value=0.17 Score=56.34 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
+..+.+.||+||||||+++.|+..++
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 46889999999999999999999985
No 435
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.91 E-value=0.2 Score=55.91 Aligned_cols=36 Identities=33% Similarity=0.493 Sum_probs=28.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc----CCCeEEEecCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS----NAPFIKIEATK 851 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l----~~~fi~l~~se 851 (1165)
+..++|+||+|+||||++..||..+ |.....+++..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 5789999999999999999999876 33455555543
No 436
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.84 E-value=0.099 Score=52.92 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..+.|.||.|+|||||.++|+..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 478899999999999999999998
No 437
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.81 E-value=0.1 Score=55.33 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..++|+||||+|||++++.++...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 688999999999999999999853
No 438
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.79 E-value=0.084 Score=56.12 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCCchHHHHHHHH
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
...+.++||+|+|||||+++++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 36889999999999999999993
No 439
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.73 E-value=0.13 Score=54.52 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=21.2
Q ss_pred ceEEEEccCCCChhHHHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKL 839 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~ 839 (1165)
..++|+||||+|||++++.++..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 57899999999999999999985
No 440
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.72 E-value=0.11 Score=58.44 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=27.7
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCC--CeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNA--PFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~--~fi~l~~se~ 852 (1165)
+..+.++||+||||||+++.+|..+.. --+.+.+.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~ 140 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 140 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecC
Confidence 468889999999999999999988721 1244444443
No 441
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.71 E-value=0.065 Score=56.97 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=15.8
Q ss_pred cEEEEEcCCCCCchHHHHHHH-HHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLA-KLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA-~~l~ 243 (1165)
.-+.|+||+||||||+++.|+ ..+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 578899999999999999999 8763
No 442
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.70 E-value=0.1 Score=56.20 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=24.2
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAP 245 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~ 245 (1165)
..+-+.||+|+||||+++.|+..+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 578899999999999999999998754
No 443
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.64 E-value=0.14 Score=54.21 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=25.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh---CCCceEEec
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEA 251 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~ 251 (1165)
..++++||||+|||+++..++..+ +.+.+.++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 578999999999999998887654 445555554
No 444
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.63 E-value=0.1 Score=55.99 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.8
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNA 842 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~ 842 (1165)
..-+.|.|||||||||+++.|++.++.
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 356888999999999999999999863
No 445
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.60 E-value=0.11 Score=52.48 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=22.3
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
..+.|.||.|+|||||.++++..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 467899999999999999999998
No 446
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.58 E-value=0.11 Score=55.64 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=26.3
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
..+.+.|++|||||++++.||+.++.+|+
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~ 43 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFY 43 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEE
Confidence 46888999999999999999999998764
No 447
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.55 E-value=0.1 Score=55.69 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
.-+.|.||+|+|||||.++|+..+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 5788999999999999999999874
No 448
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.54 E-value=0.094 Score=55.72 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=19.6
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLA 837 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA 837 (1165)
..+.++||+|+|||||+++++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 578899999999999999998
No 449
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.52 E-value=0.1 Score=57.14 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=22.6
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
..++++||+||||||+.++++..+.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhCC
Confidence 5788999999999999999998873
No 450
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.47 E-value=0.094 Score=58.35 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=26.9
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC---CCeEEEecCCcc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN---APFIKIEATKFT 853 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~---~~fi~l~~se~~ 853 (1165)
.-+.+.||+||||||+|+.|++.++ ..+..+++..|.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 4688999999999999999999875 445667776653
No 451
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.37 E-value=0.096 Score=54.61 Aligned_cols=24 Identities=29% Similarity=0.747 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..+.++||+|+||||+.+.|+..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 357899999999999999999987
No 452
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.29 E-value=0.12 Score=55.26 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=22.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
.-+.|.||+|+|||||.++|+....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 5678999999999999999999875
No 453
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.25 E-value=0.22 Score=56.28 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=23.6
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
|..+.+.||+||||||+++.|+..++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46788999999999999999999985
No 454
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=91.24 E-value=0.11 Score=63.24 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=30.5
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC----CCceEEeccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN----APFIKIEATK 253 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~----~~~i~ld~s~ 253 (1165)
+..++|.|+|||||||+|++|++.++ .+++.+|...
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 46899999999999999999999985 6777777543
No 455
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.23 E-value=0.12 Score=55.56 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.9
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAP 843 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~ 843 (1165)
..+.+.||+|+||||+++.|+..++..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 467899999999999999999988754
No 456
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.22 E-value=0.59 Score=49.09 Aligned_cols=32 Identities=22% Similarity=0.160 Sum_probs=25.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh---CCCceEEe
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIE 250 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld 250 (1165)
+.+++++++|.|||++|-.+|-.. |.....+.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 789999999999999999888555 55555444
No 457
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.17 E-value=0.11 Score=55.73 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=26.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
..+.+.|++|||||++|+.||+.+|.+|+
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~ 43 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFY 43 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEE
Confidence 57899999999999999999999987764
No 458
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.17 E-value=0.077 Score=56.43 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=15.6
Q ss_pred ceEEEEccCCCChhHHHHHHH-HHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLA-KLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA-~~l~ 841 (1165)
..+.|.||+||||||+++.|+ ..+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 567899999999999999999 8764
No 459
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.14 E-value=0.11 Score=54.29 Aligned_cols=23 Identities=30% Similarity=0.741 Sum_probs=21.4
Q ss_pred eEEEEccCCCChhHHHHHHHHHc
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
.+.++||+||||||+.+.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999987
No 460
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.13 E-value=0.15 Score=54.14 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
.-+.|.||+||||||+++.|++.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999984
No 461
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.07 E-value=0.12 Score=57.98 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..+.|+||+|+|||||+++|+..+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 588999999999999999999998
No 462
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.06 E-value=0.089 Score=62.46 Aligned_cols=30 Identities=33% Similarity=0.478 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
+..++|+|.||+|||++++.|++.++..++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~ 68 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGV 68 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCC
Confidence 468999999999999999999999865443
No 463
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.05 E-value=0.12 Score=62.31 Aligned_cols=29 Identities=34% Similarity=0.453 Sum_probs=25.1
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPF 246 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~ 246 (1165)
+..++|+|+||+||||+|+.||+.++..+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 45789999999999999999999985443
No 464
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.99 E-value=0.12 Score=58.29 Aligned_cols=26 Identities=38% Similarity=0.431 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
+..+.+.||+|||||||++.|+..+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcc
Confidence 46788999999999999999999883
No 465
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.92 E-value=0.22 Score=52.71 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=24.9
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc---CCCeEEEec
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEA 849 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~ 849 (1165)
..++++||||+|||+++..++... +.+.+.++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 578999999999999998777554 445555554
No 466
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.86 E-value=0.33 Score=58.25 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=28.6
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecc
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEAT 252 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s 252 (1165)
++..++|+|+|||||||++..||..+ |.....+++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D 138 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 35789999999999999999999887 5666666653
No 467
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.82 E-value=0.12 Score=58.36 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
|.-+.+.||+||||||++++|+..++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46889999999999999999999985
No 468
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=90.78 E-value=0.17 Score=58.12 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~ 253 (1165)
..++++||||||||+|+..++..+ +...+.++..+
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 578999999999999999999876 45556666544
No 469
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=90.77 E-value=1.7 Score=52.75 Aligned_cols=75 Identities=16% Similarity=0.255 Sum_probs=47.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccc-cCceeeeeceeecCceEEEEEeCCcccCCCC--CCchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV-EGTTVNTKYGIIKTDHILFIASGAFHLAKPS--DLIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~-Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~--~l~pel~~ 495 (1165)
++-+|+|||++.+..... ..+...|..+. +|.. -.|.+|.+ +.+|+ .+.+.+.+
T Consensus 343 P~ivvVIDE~~~L~~~~~---------~~~~~~L~~Iar~GRa----------~GIhLIla----TQRPs~d~I~~~Ira 399 (574)
T 2iut_A 343 PTIVVVVDEFADMMMIVG---------KKVEELIARIAQKARA----------AGIHLILA----TQRPSVDVITGLIKA 399 (574)
T ss_dssp CEEEEEESCCTTHHHHTC---------HHHHHHHHHHHHHCTT----------TTEEEEEE----ESCCCTTTSCHHHHH
T ss_pred CcEEEEEeCHHHHhhhhh---------HHHHHHHHHHHHHHhh----------CCeEEEEE----ecCcccccccHHHHh
Confidence 345899999998875421 11332333332 2321 12333433 25677 57777888
Q ss_pred CCCeeEecCCCCHHHHHHHHh
Q psy2392 496 RFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 496 R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
-|+.+|.|.--+..|...||.
T Consensus 400 n~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 400 NIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp TCCEEEEECCSCHHHHHHHHS
T ss_pred hhccEEEEEcCCHHHHHHhcC
Confidence 999999999999988887773
No 470
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=90.73 E-value=0.15 Score=62.18 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=30.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC----CCeEEEecCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN----APFIKIEATK 851 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~----~~fi~l~~se 851 (1165)
+..++|.|+||+||||+|++|++.++ .+++.+|...
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 46789999999999999999999985 7788887543
No 471
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.66 E-value=0.41 Score=56.16 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEec
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEA 251 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~ 251 (1165)
++..++++||+|+||||++..||..+ +.....+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 35688999999999999999999988 344455554
No 472
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.60 E-value=0.56 Score=52.30 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=28.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 851 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se 851 (1165)
+..+++.||+|+||||++..+|..+ +.....+++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 5678889999999999999999887 55555556543
No 473
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=90.60 E-value=0.14 Score=61.74 Aligned_cols=37 Identities=30% Similarity=0.504 Sum_probs=28.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCC---CeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNA---PFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~---~fi~l~~se~ 852 (1165)
+..++|+|+||+||||+|+.|++.++. +...++..++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 457899999999999999999999843 3444555443
No 474
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.58 E-value=0.13 Score=58.90 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
+.++++||+||||||+.++++..+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 689999999999999999999987
No 475
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.53 E-value=0.14 Score=57.71 Aligned_cols=26 Identities=38% Similarity=0.431 Sum_probs=23.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
+..+.+.||+|||||||+++|+..+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcc
Confidence 45788899999999999999999884
No 476
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.47 E-value=0.15 Score=57.27 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=22.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
..+.++||+|+|||||+++|+..+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 578899999999999999999998
No 477
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.24 E-value=0.12 Score=57.75 Aligned_cols=26 Identities=38% Similarity=0.502 Sum_probs=23.3
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
+..+.+.||+||||||+++.|+..++
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35788999999999999999999876
No 478
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.22 E-value=0.16 Score=52.79 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..+++++|++|+|||+|..++....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4699999999999999999998754
No 479
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.21 E-value=0.64 Score=55.74 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=28.7
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 851 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se 851 (1165)
+..++|+|+|||||||++..||..+ +.....+++..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 5789999999999999999999776 56666666533
No 480
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=90.20 E-value=0.24 Score=56.85 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=27.9
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 851 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se 851 (1165)
..++++||||||||+|+..++..+ +.+.+.++..+
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 578889999999999999999875 44556666654
No 481
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.15 E-value=0.15 Score=58.72 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..++++||+|+||||+.++++..+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 679999999999999999999987
No 482
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.06 E-value=0.16 Score=58.30 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=22.6
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
+.+++.||+||||||+.++++..+.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhccc
Confidence 5789999999999999999998873
No 483
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.02 E-value=0.15 Score=54.53 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
+..+.+.|++||||||+++.|++.++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999999994
No 484
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=89.96 E-value=0.11 Score=61.79 Aligned_cols=29 Identities=34% Similarity=0.458 Sum_probs=24.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCe
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPF 844 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~f 844 (1165)
+..++|+|.||+||||+++.|++.++..+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 46799999999999999999999875433
No 485
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=89.96 E-value=0.71 Score=54.16 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=27.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEec
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEA 849 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~ 849 (1165)
+..++++||+|+||||++..+|..+ +.....+++
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 5778899999999999999999887 344555555
No 486
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.86 E-value=0.23 Score=51.75 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
..++++|++|+|||+++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 6899999999999999999998874
No 487
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.82 E-value=0.18 Score=56.41 Aligned_cols=26 Identities=38% Similarity=0.502 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
+..+.+.||+||||||+++.|+..++
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35789999999999999999999875
No 488
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=89.82 E-value=0.53 Score=55.36 Aligned_cols=38 Identities=29% Similarity=0.497 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHh----CCCceEEecccc
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLS----NAPFIKIEATKF 254 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l----~~~~i~ld~s~~ 254 (1165)
++..++++|++|+||||++-.||..+ |....-+++..+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 35789999999999999999999877 556667776543
No 489
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.80 E-value=0.17 Score=55.77 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
.-+++.||||+|||+|++.+|..+
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999887
No 490
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.75 E-value=0.19 Score=51.05 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
++-.+++||+|||||++.++|+-.++
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 36789999999999999999999885
No 491
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.63 E-value=0.19 Score=57.96 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=22.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
..++++||+|+||||+.++++..+.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 6789999999999999999998873
No 492
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=89.60 E-value=0.33 Score=59.90 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=17.9
Q ss_pred cEEEEEcCCCCCchHHH-HHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIA-RRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lA-k~lA~~l 242 (1165)
.-.|++||||||||++. .+++..+
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999754 5555544
No 493
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.58 E-value=0.16 Score=61.00 Aligned_cols=27 Identities=11% Similarity=0.041 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNA 244 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~ 244 (1165)
...++|.|++||||||+|++||+.++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999999974
No 494
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.56 E-value=0.18 Score=55.22 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..++++||||+|||+|+..++..+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 688999999999999999999765
No 495
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.55 E-value=0.17 Score=60.95 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=26.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC--CCceEEe
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN--APFIKIE 250 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~--~~~i~ld 250 (1165)
.++++.||+||||||+.++++..+. ...+.++
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitie 294 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIE 294 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEc
Confidence 5799999999999999999999883 3334443
No 496
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.51 E-value=0.18 Score=53.37 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKL 241 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~ 241 (1165)
..+.+.||+|||||||.++++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57889999999999999999987
No 497
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.49 E-value=0.27 Score=52.83 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=26.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh---CCCceEEec
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEA 251 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~ 251 (1165)
-++++.|+||||||+++-.+|..+ |.....++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 579999999999999999999887 555544444
No 498
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.38 E-value=0.15 Score=58.41 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
..++++||+|+||||+.++|+..+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 6899999999999999999999874
No 499
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.27 E-value=0.21 Score=53.43 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=23.6
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
+..+.+.|++||||||+++.|++.++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999999994
No 500
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=89.14 E-value=0.28 Score=56.04 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=27.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEAT 252 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s 252 (1165)
..++++||||+|||+||..++..+ +.....++..
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 678999999999999999998765 4555666654
Done!