RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2392
(1165 letters)
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent
proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A*
1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E*
1ht1_E* 1ht2_E*
Length = 444
Score = 662 bits (1711), Expect = 0.0
Identities = 265/438 (60%), Positives = 357/438 (81%), Gaps = 7/438 (1%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIVSELD+++IGQ AKRAVAIALRNRWRR Q+ PL+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 8 EIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIA 67
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D ++K R+ EI K R RAED A
Sbjct: 68 RRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVA 127
Query: 296 EDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHM- 354
E+R++D L+P + + + N +++ STRQ FRK+LREG LD+KEIEI+++
Sbjct: 128 EERILDALLPPAKNQWGEVE--NHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGV 185
Query: 355 EIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAI 414
EIM+PPGMEEMT Q++++F +G+ + K RK+KI++A+K LID+EA KL+N +E++QKAI
Sbjct: 186 EIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAI 245
Query: 415 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHIL 474
+ VEQNGI+F+DEIDKI + + + D+SR GVQRDLLPLVEG+TV+TK+G++KTDHIL
Sbjct: 246 DAVEQNGIVFIDEIDKICKK-GEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHIL 304
Query: 475 FIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEG 534
FIASGAF +A+PSDLIPELQGR PIRVEL +LS +DF RI+T + LT+QY+AL+ATEG
Sbjct: 305 FIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEG 364
Query: 535 IKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS---LLVDAD 591
+ I F D ++++AE A+ +NE+TENIGARRL+T ME+L++++SF++++++ + +DA
Sbjct: 365 VNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAA 424
Query: 592 YVNSRLGDLSINEDLSRY 609
YV LG++ NEDLSR+
Sbjct: 425 YVADALGEVVENEDLSRF 442
Score = 595 bits (1535), Expect = 0.0
Identities = 242/387 (62%), Positives = 317/387 (81%), Gaps = 4/387 (1%)
Query: 774 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 833
EIVSELD+++IGQ AKRAVAIALRNRWRR Q+ PL+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 8 EIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIA 67
Query: 834 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 893
RRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D ++K R+ EI K R RAED A
Sbjct: 68 RRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVA 127
Query: 894 EDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHM- 952
E+R++D L+P + + + N +++ STRQ FRK+LREG LD+KEIEI+++
Sbjct: 128 EERILDALLPPAKNQWGEVE--NHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGV 185
Query: 953 EIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAI 1012
EIM+PPGMEEMT Q++++F +G+ + K RK+KI++A+K LID+EA KL+N +E++QKAI
Sbjct: 186 EIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAI 245
Query: 1013 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHIL 1072
+ VEQNGI+F+DEIDKI + + + D+SR GVQRDLLPLVEG+TV+TK+G++KTDHIL
Sbjct: 246 DAVEQNGIVFIDEIDKICKK-GEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHIL 304
Query: 1073 FIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEG 1132
FIASGAF +A+PSDLIPELQGR PIRVEL +LS +DF RI+T + LT+QY+AL+ATEG
Sbjct: 305 FIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEG 364
Query: 1133 IKIEFVDDGIQRLAEIAYCINERTENI 1159
+ I F D ++++AE A+ +NE+TENI
Sbjct: 365 VNIAFTTDAVKKIAEAAFRVNEKTENI 391
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 390 bits (1004), Expect = e-127
Identities = 129/289 (44%), Positives = 189/289 (65%), Gaps = 9/289 (3%)
Query: 324 STRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKT 383
+ R R R L + E+ + ++ P G+ + +I + + N
Sbjct: 26 AVAIALRNRWRRMQLQE-PLRHEVTPKN--ILMIGPTGVGKT--EIARRLAKLANAPFIK 80
Query: 384 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDI 443
+ + + E + + + + AI+ VEQNGI+F+DEIDKI + + + D+
Sbjct: 81 VEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKG-EYSGADV 139
Query: 444 SRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVEL 503
SR GVQRDLLPLVEG+TV+TK+G++KTDHILFIASGAF +A+PSDLIPELQGR PIRVEL
Sbjct: 140 SREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVEL 199
Query: 504 DSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGA 563
+LS +DF RI+T + LT+QY+AL+ATEG+ I F D ++++AE A+ +NE+TENIGA
Sbjct: 200 TALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGA 259
Query: 564 RRLYTAMEKLLEEVSFN---SNNISLLVDADYVNSRLGDLSINEDLSRY 609
RRL+T ME+L++++SF+ N ++ +DA YV LG++ NEDLSR+
Sbjct: 260 RRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVENEDLSRF 308
Score = 325 bits (836), Expect = e-102
Identities = 105/238 (44%), Positives = 152/238 (63%), Gaps = 6/238 (2%)
Query: 922 STRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKT 981
+ R R R L + E+ + ++ P G+ + +I + + N
Sbjct: 26 AVAIALRNRWRRMQLQE-PLRHEVTPKN--ILMIGPTGVGKT--EIARRLAKLANAPFIK 80
Query: 982 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDI 1041
+ + + E + + + + AI+ VEQNGI+F+DEIDKI + + + D+
Sbjct: 81 VEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKG-EYSGADV 139
Query: 1042 SRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVEL 1101
SR GVQRDLLPLVEG+TV+TK+G++KTDHILFIASGAF +A+PSDLIPELQGR PIRVEL
Sbjct: 140 SREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVEL 199
Query: 1102 DSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENI 1159
+LS +DF RI+T + LT+QY+AL+ATEG+ I F D ++++AE A+ +NE+TENI
Sbjct: 200 TALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENI 257
Score = 146 bits (371), Expect = 6e-39
Identities = 86/132 (65%), Positives = 103/132 (78%), Gaps = 9/132 (6%)
Query: 175 AEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEI 234
EIVSELD+++IGQ AKRAVAIALRNRWRR Q+ PL+ E+TPKNILMIGPTGVGKTEI
Sbjct: 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEI 66
Query: 235 ARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIS---IKQTREF------EIN 285
ARRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D + I + EI+
Sbjct: 67 ARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEID 126
Query: 286 KVRTRAEDAAED 297
K+ + E + D
Sbjct: 127 KICKKGEYSGAD 138
Score = 146 bits (371), Expect = 6e-39
Identities = 86/132 (65%), Positives = 103/132 (78%), Gaps = 9/132 (6%)
Query: 773 AEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEI 832
EIVSELD+++IGQ AKRAVAIALRNRWRR Q+ PL+ E+TPKNILMIGPTGVGKTEI
Sbjct: 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEI 66
Query: 833 ARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIS---IKQTREF------EIN 883
ARRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D + I + EI+
Sbjct: 67 ARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEID 126
Query: 884 KVRTRAEDAAED 895
K+ + E + D
Sbjct: 127 KICKKGEYSGAD 138
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine
residue, hydrolase; 2.10A {Thermotoga maritima} SCOP:
d.153.1.4
Length = 171
Score = 186 bits (473), Expect = 2e-54
Identities = 90/155 (58%), Positives = 119/155 (76%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTIL VRR + +GGDGQVTFG+ ++K +A+KVRKL + +VLAG AGS ADA TL D F
Sbjct: 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRF 60
Query: 81 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENGIG 140
EA L + GNL +A+VELAK+WR DR LRRLEA+LL A++E II+GNG+V++P++
Sbjct: 61 EAKLREWGGNLTKAAVELAKDWRTDRVLRRLEALLLVADKENIFIISGNGEVIQPDDDAA 120
Query: 141 AIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIA 175
AIGSGG +A +AAKAL NT+L EI++K++ IA
Sbjct: 121 AIGSGGPYALAAAKALLRNTDLSAREIVEKAMTIA 155
Score = 186 bits (473), Expect = 2e-54
Identities = 90/155 (58%), Positives = 119/155 (76%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTIL VRR + +GGDGQVTFG+ ++K +A+KVRKL + +VLAG AGS ADA TL D F
Sbjct: 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRF 60
Query: 679 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENGIG 738
EA L + GNL +A+VELAK+WR DR LRRLEA+LL A++E II+GNG+V++P++
Sbjct: 61 EAKLREWGGNLTKAAVELAKDWRTDRVLRRLEALLLVADKENIFIISGNGEVIQPDDDAA 120
Query: 739 AIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIA 773
AIGSGG +A +AAKAL NT+L EI++K++ IA
Sbjct: 121 AIGSGGPYALAAAKALLRNTDLSAREIVEKAMTIA 155
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase;
2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A
1yyf_D* 3ty6_A
Length = 180
Score = 182 bits (463), Expect = 5e-53
Identities = 85/162 (52%), Positives = 122/162 (75%), Gaps = 3/162 (1%)
Query: 17 KFQGTTILSVRRGNKVSLGGDGQVTFGN-VIMKNSAKKVRKLYQNQVLAGIAGSTADAFT 75
F TTI +V+ + ++ GDGQVTFG V+MK++A+KVRKL+ +VLAG AGS ADAFT
Sbjct: 2 SFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFT 61
Query: 76 LLDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEP 135
L + FEA LE++ GNL RA+VELAKEWR+D+ LR+LEAML+ N++T L+++G G+V+EP
Sbjct: 62 LFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEP 121
Query: 136 ENGIGAIGSGGIFAQSAAKALQENT--ELMPDEIIKKSLVIA 175
++GI AIGSGG +A +A +AL+++ + EI + +L A
Sbjct: 122 DDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETA 163
Score = 182 bits (463), Expect = 5e-53
Identities = 85/162 (52%), Positives = 122/162 (75%), Gaps = 3/162 (1%)
Query: 615 KFQGTTILSVRRGNKVSLGGDGQVTFGN-VIMKNSAKKVRKLYQNQVLAGIAGSTADAFT 673
F TTI +V+ + ++ GDGQVTFG V+MK++A+KVRKL+ +VLAG AGS ADAFT
Sbjct: 2 SFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFT 61
Query: 674 LLDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEP 733
L + FEA LE++ GNL RA+VELAKEWR+D+ LR+LEAML+ N++T L+++G G+V+EP
Sbjct: 62 LFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEP 121
Query: 734 ENGIGAIGSGGIFAQSAAKALQENT--ELMPDEIIKKSLVIA 773
++GI AIGSGG +A +A +AL+++ + EI + +L A
Sbjct: 122 DDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETA 163
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus
influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G*
1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C*
1ht2_A* 1ned_A
Length = 174
Score = 178 bits (452), Expect = 1e-51
Identities = 97/156 (62%), Positives = 125/156 (80%), Gaps = 1/156 (0%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTI+SVRR +V +GGDGQV+ GN +MK +A+KVR+LY +VLAG AG TADAFTL + F
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 60
Query: 81 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEP-ENGI 139
E LE HQG+L++++VELAK+WR DR LR+LEAML+ A+ + +LIITG GDV++P E+ I
Sbjct: 61 ERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQI 120
Query: 140 GAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIA 175
AIGSGG +A SAA+AL ENTEL EI++KSL IA
Sbjct: 121 LAIGSGGNYALSAARALVENTELSAHEIVEKSLRIA 156
Score = 178 bits (452), Expect = 1e-51
Identities = 97/156 (62%), Positives = 125/156 (80%), Gaps = 1/156 (0%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTI+SVRR +V +GGDGQV+ GN +MK +A+KVR+LY +VLAG AG TADAFTL + F
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 60
Query: 679 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEP-ENGI 737
E LE HQG+L++++VELAK+WR DR LR+LEAML+ A+ + +LIITG GDV++P E+ I
Sbjct: 61 ERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQI 120
Query: 738 GAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIA 773
AIGSGG +A SAA+AL ENTEL EI++KSL IA
Sbjct: 121 LAIGSGGNYALSAARALVENTELSAHEIVEKSLRIA 156
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 115 bits (289), Expect = 2e-27
Identities = 72/241 (29%), Positives = 106/241 (43%), Gaps = 61/241 (25%)
Query: 411 QKAINNVE--QNGIIFLDEIDKITTRSSQNNNT--DISRAGVQRDLLPLVEGTTVNT--- 463
Q + NV+ Q GI+F+DEIDKI+ R S+N + D+S GVQ+ LL +VEG+ VN
Sbjct: 127 QASDWNVQKAQKGIVFIDEIDKIS-RLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPK 185
Query: 464 --------KYGIIKTDHILFIASGAF--------------------------------HL 483
+ I T ILFI +GAF HL
Sbjct: 186 GGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHL 245
Query: 484 AKPSDL-----IPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIE 538
+ DL IPEL GR P+ LDS+S+ I+ L KQY+ L + + +
Sbjct: 246 VQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLI 305
Query: 539 FVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSF---NSNNISLLVDADYVNS 595
F ++ I+ +A++A ER GAR L +E ++ F + + D V
Sbjct: 306 FEEEAIKEIAQLAL---ER--KTGARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLK 360
Query: 596 R 596
+
Sbjct: 361 Q 361
Score = 103 bits (258), Expect = 2e-23
Identities = 62/194 (31%), Positives = 90/194 (46%), Gaps = 53/194 (27%)
Query: 1009 QKAINNVE--QNGIIFLDEIDKITTRSSQNNNT--DISRAGVQRDLLPLVEGTTVNT--- 1061
Q + NV+ Q GI+F+DEIDKI +R S+N + D+S GVQ+ LL +VEG+ VN
Sbjct: 127 QASDWNVQKAQKGIVFIDEIDKI-SRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPK 185
Query: 1062 --------KYGIIKTDHILFIASGAF--------------------------------HL 1081
+ I T ILFI +GAF HL
Sbjct: 186 GGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHL 245
Query: 1082 AKPSDL-----IPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIE 1136
+ DL IPEL GR P+ LDS+S+ I+ L KQY+ L + + +
Sbjct: 246 VQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLI 305
Query: 1137 FVDDGIQRLAEIAY 1150
F ++ I+ +A++A
Sbjct: 306 FEEEAIKEIAQLAL 319
Score = 102 bits (256), Expect = 3e-23
Identities = 43/114 (37%), Positives = 64/114 (56%), Gaps = 16/114 (14%)
Query: 175 AEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQ----------------EITP 218
E+ + LD YVIGQ +AK+ ++A+ N ++R L++ E++
Sbjct: 13 KELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSK 72
Query: 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLI 272
NIL+IGPTG GKT +A+ LAK + P +AT TE GYVG DV+ I+ L+
Sbjct: 73 SNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLL 126
Score = 102 bits (256), Expect = 3e-23
Identities = 43/114 (37%), Positives = 64/114 (56%), Gaps = 16/114 (14%)
Query: 773 AEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQ----------------EITP 816
E+ + LD YVIGQ +AK+ ++A+ N ++R L++ E++
Sbjct: 13 KELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSK 72
Query: 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLI 870
NIL+IGPTG GKT +A+ LAK + P +AT TE GYVG DV+ I+ L+
Sbjct: 73 SNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLL 126
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 109 bits (276), Expect = 6e-26
Identities = 67/225 (29%), Positives = 97/225 (43%), Gaps = 62/225 (27%)
Query: 411 QKAINNVE--QNGIIFLDEIDKITTRSSQNNNT--DISRAGVQRDLLPLVEGTTVNT--- 463
QK +V+ Q GI+++D+IDKI+ R S N + D+S GVQ+ LL L+EGT
Sbjct: 106 QKCDYDVQKAQRGIVYIDQIDKIS-RKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQ 164
Query: 464 --------KYGIIKTDHILFIASGAF---------------------------------- 481
++ + T ILFI GAF
Sbjct: 165 GGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGE 224
Query: 482 --HLAKPSDL-----IPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEG 534
+P DL IPE GR P+ L+ LS +I+ LTKQY+AL EG
Sbjct: 225 LLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEG 284
Query: 535 IKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSF 579
+ +EF D+ + +A+ A R GAR L + +E L + +
Sbjct: 285 VDLEFRDEALDAIAKKAM---AR--KTGARGLRSIVEAALLDTMY 324
Score = 105 bits (264), Expect = 2e-24
Identities = 46/99 (46%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 175 AEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQ-EITPKNILMIGPTGVGKTE 233
EI + LD YVIGQ +AK+ +A+A+ N ++R + E+ NIL+IGPTG GKT
Sbjct: 7 HEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTL 66
Query: 234 IARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLI 272
+A LA+L + PF +AT TE GYVG DV+ II+ L+
Sbjct: 67 LAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 105
Score = 105 bits (264), Expect = 2e-24
Identities = 46/99 (46%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 773 AEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQ-EITPKNILMIGPTGVGKTE 831
EI + LD YVIGQ +AK+ +A+A+ N ++R + E+ NIL+IGPTG GKT
Sbjct: 7 HEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTL 66
Query: 832 IARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLI 870
+A LA+L + PF +AT TE GYVG DV+ II+ L+
Sbjct: 67 LAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 105
Score = 101 bits (253), Expect = 6e-23
Identities = 60/197 (30%), Positives = 86/197 (43%), Gaps = 57/197 (28%)
Query: 1009 QKAINNVE--QNGIIFLDEIDKITTRSSQNNNT--DISRAGVQRDLLPLVEGTTVNT--- 1061
QK +V+ Q GI+++D+IDKI +R S N + D+S GVQ+ LL L+EGT
Sbjct: 106 QKCDYDVQKAQRGIVYIDQIDKI-SRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQ 164
Query: 1062 --------KYGIIKTDHILFIASGAF---------------------------------- 1079
++ + T ILFI GAF
Sbjct: 165 GGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGE 224
Query: 1080 --HLAKPSDL-----IPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEG 1132
+P DL IPE GR P+ L+ LS +I+ LTKQY+AL EG
Sbjct: 225 LLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEG 284
Query: 1133 IKIEFVDDGIQRLAEIA 1149
+ +EF D+ + +A+ A
Sbjct: 285 VDLEFRDEALDAIAKKA 301
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 77.4 bits (190), Expect = 2e-14
Identities = 122/610 (20%), Positives = 195/610 (31%), Gaps = 236/610 (38%)
Query: 498 PIRVELDSLSISDFTRIMTSTNVC-----LTKQYEALL--ATEGIKIEFVDDGIQRLAE- 549
P+ + SL ++ T L +Q+ +L TEG DD AE
Sbjct: 8 PLTLSHGSLEHV----LLVPTASFFIASQLQEQFNKILPEPTEGFA---ADDEPTTPAEL 60
Query: 550 ----IAYCINERTENIGARRLYTAMEKLLEEVSFNS-----NNI-----SLLVDAD---- 591
+ Y ++ E + + L E F + N+I LL + D
Sbjct: 61 VGKFLGY-VSSLVEPSKVGQFDQVLNLCLTE--FENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 592 --------YVNSRLGDLSINEDLSRYDSGMEKFQGTTILSVRRGNKVSL----GGDGQVT 639
Y+ +R+ ++ + +S + F+ +V GN L GG Q
Sbjct: 118 KTKELIKNYITARI--MAKRPFDKKSNSAL--FR-----AVGEGN-AQLVAIFGG--Q-- 163
Query: 640 FGNVIMKNSA--KKVRKLYQ-------------NQVLAGIAGSTADAFTLLDFFEANLEK 684
GN +++R LYQ + L+ + +T DA F L
Sbjct: 164 -GN----TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE---KVFTQGL-- 213
Query: 685 HQGNLMRASVELAKEWRNDRTLRRLEAMLLT-------------ANRETTLIITGNGDVL 731
N++ EW + + + LL+ A+ T + G
Sbjct: 214 ---NIL--------EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG----F 258
Query: 732 EPENGI----GAIG-SGGI--------------FAQSAAKAL----------QE---NTE 759
P GA G S G+ F S KA+ E NT
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 760 LMPDEIIKKS-----------LVIAEI-VSELDKYVIGQNR---AKRAVAIALRNRWRRQ 804
L P I++ S L I+ + ++ YV N A + V I+L N +
Sbjct: 319 L-PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377
Query: 805 QITGPLQQEITPKNILMIG----------PTGVGKTEI--ARRLAKLSN------APFIK 846
++GP P++ + G P+G+ ++ I + R K SN +PF
Sbjct: 378 VVSGP------PQS--LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF-- 427
Query: 847 IEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKE 906
+ + D I +DL N A+D I I V
Sbjct: 428 -----HSH--LLVPASDLINKDL------VKNNVSFN-----AKD------IQIPV---- 459
Query: 907 KSNLDT----DFNNENNNIS---TRQIFRKRLR-EGALDNKEIEIELNDTGPHMEIMSPP 958
DT D + +IS I R ++ E K I L D GP
Sbjct: 460 ---YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI-L-DFGP----GGAS 510
Query: 959 GMEEMTAQIK 968
G+ +T + K
Sbjct: 511 GLGVLTHRNK 520
Score = 64.7 bits (157), Expect = 2e-10
Identities = 97/471 (20%), Positives = 149/471 (31%), Gaps = 190/471 (40%)
Query: 5 RNVSSAKDSGMEKFQGTTILSVRRGNKVSL----GGDGQVTFGNVIMKNSA--KKVRKLY 58
R +S + F+ +V GN L GG Q GN +++R LY
Sbjct: 135 RPFDKKSNSAL--FR-----AVGEGN-AQLVAIFGG--Q---GN----TDDYFEELRDLY 177
Query: 59 Q-------------NQVLAGIAGSTADAFTLLDFFEANLEKHQGNLMRASVELAKEWRND 105
Q + L+ + +T DA F L N++ EW +
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAE---KVFTQGL-----NIL--------EWLEN 221
Query: 106 RTLRRLEAMLLT-------------ANRETTLIITGNGDVLEPENGI----GAIG-SGGI 147
+ + LL+ A+ T + G P GA G S G+
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG----FTPGELRSYLKGATGHSQGL 277
Query: 148 --------------FAQSAAKAL----------QE---NTELMPDEIIKKS--------- 171
F S KA+ E NT L P I++ S
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL-PPSILEDSLENNEGVPS 336
Query: 172 --LVIAEI-VSELDKYVIGQNR---AKRAVAIALRNRWRRQQITGPLQQEITPKNILMIG 225
L I+ + ++ YV N A + V I+L N + ++GP P++ + G
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP------PQS--LYG 388
Query: 226 ----------PTGVGKTEI--ARRLAKLSN------APFIKIEATKFTEVGYVGRDVDTI 267
P+G+ ++ I + R K SN +PF + + D I
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF-------HSH--LLVPASDLI 439
Query: 268 IRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDT----DFNNENNNI 323
+DL N A+D I I V DT D + +I
Sbjct: 440 NKDL------VKNNVSFN-----AKD------IQIPV-------YDTFDGSDLRVLSGSI 475
Query: 324 S---TRQIFRKRLR-EGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIK 370
S I R ++ E K I L D GP G+ +T + K
Sbjct: 476 SERIVDCIIRLPVKWETTTQFKATHI-L-DFGP----GGASGLGVLTHRNK 520
Score = 43.5 bits (102), Expect = 5e-04
Identities = 61/321 (19%), Positives = 99/321 (30%), Gaps = 93/321 (28%)
Query: 88 QG--------NLMRASVELAKE-W-RNDRTLRRLEAMLLTANRETTLIITGNGDVLEPEN 137
QG +L + S + A++ W R D + + I+ N L
Sbjct: 1624 QGSQEQGMGMDLYKTS-KAAQDVWNRADNHFKDTYGFSILD------IVINNPVNLTIHF 1676
Query: 138 GIGAIGSGGIFAQSAAKALQENTELM-----PDEIIKKSLVIAEIVSELDKYVIG----- 187
G G G K ++EN M D +K + EI Y
Sbjct: 1677 G----GEKG-------KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL 1725
Query: 188 ----QN--RAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIG-PTGVGKTEI-ARRLA 239
Q A + A + + G + P + G G E A LA
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSK---G-----LIPADATFAGHSLG----EYAA--LA 1771
Query: 240 KLSNA-PF---IKIEATKFTEVGYVGRDVDTII-RDLIDISIKQTREFEINKVRTRAEDA 294
L++ +++ V Y G + + RD + S IN R A +
Sbjct: 1772 SLADVMSIESLVEV-------VFYRGMTMQVAVPRDELGRS--NYGMIAINPGRVAASFS 1822
Query: 295 AEDRVIDILVPSKEKSNLDTDFNNE--NNNISTRQIF---RKRLREGALDN-----KEIE 344
E + +V E+ T + E N N+ +Q R ALD I+
Sbjct: 1823 QEA--LQYVV---ERVGKRTGWLVEIVNYNVENQQYVAAGDLR----ALDTVTNVLNFIK 1873
Query: 345 IELNDTGPHMEIMSPPGMEEM 365
++ D + +S +E
Sbjct: 1874 LQKIDIIELQKSLSLEEVEGH 1894
Score = 43.5 bits (102), Expect = 5e-04
Identities = 61/321 (19%), Positives = 99/321 (30%), Gaps = 93/321 (28%)
Query: 686 QG--------NLMRASVELAKE-W-RNDRTLRRLEAMLLTANRETTLIITGNGDVLEPEN 735
QG +L + S + A++ W R D + + I+ N L
Sbjct: 1624 QGSQEQGMGMDLYKTS-KAAQDVWNRADNHFKDTYGFSILD------IVINNPVNLTIHF 1676
Query: 736 GIGAIGSGGIFAQSAAKALQENTELM-----PDEIIKKSLVIAEIVSELDKYVIG----- 785
G G G K ++EN M D +K + EI Y
Sbjct: 1677 G----GEKG-------KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL 1725
Query: 786 ----QN--RAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIG-PTGVGKTEI-ARRLA 837
Q A + A + + G + P + G G E A LA
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSK---G-----LIPADATFAGHSLG----EYAA--LA 1771
Query: 838 KLSNA-PF---IKIEATKFTEVGYVGRDVDTII-RDLIDISIKQTREFEINKVRTRAEDA 892
L++ +++ V Y G + + RD + S IN R A +
Sbjct: 1772 SLADVMSIESLVEV-------VFYRGMTMQVAVPRDELGRS--NYGMIAINPGRVAASFS 1822
Query: 893 AEDRVIDILVPSKEKSNLDTDFNNE--NNNISTRQIF---RKRLREGALDN-----KEIE 942
E + +V E+ T + E N N+ +Q R ALD I+
Sbjct: 1823 QEA--LQYVV---ERVGKRTGWLVEIVNYNVENQQYVAAGDLR----ALDTVTNVLNFIK 1873
Query: 943 IELNDTGPHMEIMSPPGMEEM 963
++ D + +S +E
Sbjct: 1874 LQKIDIIELQKSLSLEEVEGH 1894
Score = 40.8 bits (95), Expect = 0.003
Identities = 47/241 (19%), Positives = 76/241 (31%), Gaps = 77/241 (31%)
Query: 372 MFSVIGNHRKKTRKI--KIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEID 429
+F I + + KT KI +I E LL+ + Q A + L
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA---------LTL---- 1738
Query: 430 KITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTD-----HIL--FIA----S 478
+ +A DL G+I D H L + A +
Sbjct: 1739 -------------MEKA-AFEDL----------KSKGLIPADATFAGHSLGEYAALASLA 1774
Query: 479 GAFHLAKPSDLIPEL---QGRFPIR-VELDSLSISDFTRIMTSTN---VCLTKQYEALLA 531
+ L+ E+ +G V D L S++ M + N V + EAL
Sbjct: 1775 DVMSI---ESLV-EVVFYRGMTMQVAVPRDELGRSNYG--MIAINPGRVAASFSQEALQY 1828
Query: 532 TEGIKIEFVDDGIQRLAEIA-YCINERTENI---GARRLYTAMEKLLEEVSFN-SNNISL 586
+E V L EI Y N + G R A++ + ++F I +
Sbjct: 1829 V----VERVGKRTGWLVEIVNY--NVENQQYVAAGDLR---ALDTVTNVLNFIKLQKIDI 1879
Query: 587 L 587
+
Sbjct: 1880 I 1880
Score = 39.6 bits (92), Expect = 0.008
Identities = 43/213 (20%), Positives = 65/213 (30%), Gaps = 70/213 (32%)
Query: 970 MFSVIGNHRKKTRKI--KIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEID 1027
+F I + + KT KI +I E LL+ + Q A + L
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA---------LTL---- 1738
Query: 1028 KITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTD-----HIL--FIA----S 1076
+ +A DL G+I D H L + A +
Sbjct: 1739 -------------MEKA-AFEDL----------KSKGLIPADATFAGHSLGEYAALASLA 1774
Query: 1077 GAFHLAKPSDLIPEL---QGRFPIR-VELDSLSISDFTRIMTSTN---VCLTKQYEALLA 1129
+ L+ E+ +G V D L S++ M + N V + EAL
Sbjct: 1775 DVMSI---ESLV-EVVFYRGMTMQVAVPRDELGRSNYG--MIAINPGRVAASFSQEALQY 1828
Query: 1130 TEGIKIEFVDDGIQRLAEIA-YCINERTENIVI 1161
+E V L EI Y N + V
Sbjct: 1829 V----VERVGKRTGWLVEIVNY--NVENQQYVA 1855
Score = 37.0 bits (85), Expect = 0.053
Identities = 42/250 (16%), Positives = 83/250 (33%), Gaps = 79/250 (31%)
Query: 347 LNDTGPHME-IMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLN 405
L D+ + E + SP M S+ ++ ++++ + + N L
Sbjct: 324 LEDSLENNEGVPSP------------MLSISNLTQE-----QVQDYV-----NKTNSHLP 361
Query: 406 EDEIQQKAINNVEQNGII---------FLDEIDKITTRSSQNNNTDISRA-GVQRDLLPL 455
+ + ++ N +N ++ + K S D SR +R L
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS----GLDQSRIPFSERKL--- 414
Query: 456 VEGTTVNTKYGIIKTDHILFIASGAFH---LAKPSDLIPELQGRFPIRVELDSLSI---- 508
+ ++ L +AS FH L SDLI + + + + I
Sbjct: 415 ----KFSNRF--------LPVAS-PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 509 ----SDFTRIMTSTNV------CLTKQ---YEALLATEGIKI-EFVDDGIQRLAEIAYCI 554
SD R++ S ++ C+ + +E + I +F G L + +
Sbjct: 462 TFDGSDL-RVL-SGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRN 519
Query: 555 NERTENIGAR 564
+ T G R
Sbjct: 520 KDGT---GVR 526
Score = 34.3 bits (78), Expect = 0.35
Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 56/176 (31%)
Query: 945 LNDTGPHME-IMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLN 1003
L D+ + E + SP M S+ ++ ++++ + + N L
Sbjct: 324 LEDSLENNEGVPSP------------MLSISNLTQE-----QVQDYV-----NKTNSHLP 361
Query: 1004 EDEIQQKAINNVEQNGII---------FLDEIDKITTRSSQNNNTDISRA-GVQRDLLPL 1053
+ + ++ N +N ++ + K S D SR +R L
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS----GLDQSRIPFSERKL--- 414
Query: 1054 VEGTTVNTKYGIIKTDHILFIASGAFH---LAKPSDLIPELQGRFPIRVELDSLSI 1106
+ ++ L +AS FH L SDLI + + + + I
Sbjct: 415 ----KFSNRF--------LPVAS-PFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 76.0 bits (186), Expect = 6e-14
Identities = 90/637 (14%), Positives = 182/637 (28%), Gaps = 190/637 (29%)
Query: 252 TKFTEVGYVGRDV-----DTIIRDL--IDI-----SIKQTREF-EINKVRTRAEDAAEDR 298
+ E Y +D+ D + + D+ SI E I + R
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT--LR 66
Query: 299 VIDILVPSKEK-------SNLDTDFN-------NENNN--------ISTR-------QIF 329
+ L+ +E+ L ++ E I R Q+F
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 330 RKR----------LREGALDNKEIEIELNDTGPHMEI----MSPPGMEEMTAQ------I 369
K LR+ L EL P + + G + +
Sbjct: 127 AKYNVSRLQPYLKLRQALL-------ELR---PAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 370 KTMFS--V----IGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVE----- 418
+ + + N +++ + + ID + + I++++
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 419 -------QNGIIFLDEI-DK-------------ITTRSSQNNNTDISRAGVQRDLLPLVE 457
+N ++ L + + +TTR TD A + L
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK--QVTDFLSAATTTHI-SLDH 293
Query: 458 GTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTS 517
+ T D + + +P DL E+ P R+ + + SI D + T
Sbjct: 294 HSMTLTP------DEVKSLLLKYLDC-RPQDLPREVLTTNPRRLSIIAESIRDG--LATW 344
Query: 518 TNVCLTKQYEALLATEGIKIEFVDDGIQR-----LAEIAYCINERTENIGAR---RLYTA 569
N + L + ++ R L+ + + +I ++
Sbjct: 345 DNW-KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-----VFPPSAHIPTILLSLIWFD 398
Query: 570 MEKLLEEVSFNSNNISLLVDADYVNSRLGDLSINEDL---SRYDSGMEKFQGTTILSVRR 626
+ K V N + LV+ S + SI +L + + + +I+
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR----SIVDHYN 454
Query: 627 GNKVSLGGDGQVT-----FGNVI---MKNS--AKKV---RKLYQN-----------QVLA 662
K D F + I +KN +++ R ++ +
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 663 GIAGSTADAFTLLDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTL 722
+GS + L F++ + + + +R + + L E L
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDP-------------KYERLVNAILDFLPKI--EENL 559
Query: 723 IITGNGDV----LEPENGIGAIGSGGIFAQSAAKALQ 755
I + D+ L E+ IF + A K +Q
Sbjct: 560 ICSKYTDLLRIALMAED-------EAIFEE-AHKQVQ 588
Score = 74.1 bits (181), Expect = 2e-13
Identities = 80/530 (15%), Positives = 151/530 (28%), Gaps = 156/530 (29%)
Query: 76 LLDFFEANLE-KHQGNLMRASV------ELAKEWRNDRTLRRLEAMLLTANRETTLIITG 128
D F N + K ++ ++ + + RL LL+ E
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 129 NGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDK-YVIG 187
+VL F S K E + S++ + + D+ Y
Sbjct: 85 --EVLRINYK---------FLMSPIKT----------EQRQPSMMTRMYIEQRDRLYNDN 123
Query: 188 QNRAKRAVAIALRNRWRRQQITGPLQ---QEITP-KNILMIGPTGVGKT----EIARRLA 239
Q AK V R Q L+ E+ P KN+L+ G G GKT ++
Sbjct: 124 QVFAKYNV-------SRLQPYL-KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 240 KLSNAPFIKIEATKF-TEVGYVGRDVDTI-----------------------IRDLIDIS 275
F KI F + + I+ I
Sbjct: 176 VQCKMDF-KI----FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 276 IKQTREFEINKVRTRA----EDAAEDRVID-------ILVPSKEKSNLDTDFNNENNNIS 324
+ R +K + + + IL+ ++ K TDF +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV--TDFLSAAT--- 285
Query: 325 TRQIFRKRLREGALDNKE--------IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 376
T I L E ++ D + +P + + I+ +
Sbjct: 286 TTHISLDHHSMT-LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 377 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQK----AI-----------------N 415
N + K+ I+ ++ L E ++ ++ +
Sbjct: 345 DNWKHVNCD-KLTTIIESSLNV-----LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 416 NVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTT------VNTKYGIIK 469
++ + ++ ++++ K + Q + IS + +L +E V+ Y I K
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-HYNIPK 457
Query: 470 T---DHIL----------FIASGAFHL--AKPSDLIPELQGRFPIRVELD 504
T D ++ I HL + + + F V LD
Sbjct: 458 TFDSDDLIPPYLDQYFYSHI---GHHLKNIEHPERMTL----FR-MVFLD 499
Score = 74.1 bits (181), Expect = 2e-13
Identities = 80/530 (15%), Positives = 151/530 (28%), Gaps = 156/530 (29%)
Query: 674 LLDFFEANLE-KHQGNLMRASV------ELAKEWRNDRTLRRLEAMLLTANRETTLIITG 726
D F N + K ++ ++ + + RL LL+ E
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 727 NGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDK-YVIG 785
+VL F S K E + S++ + + D+ Y
Sbjct: 85 --EVLRINYK---------FLMSPIKT----------EQRQPSMMTRMYIEQRDRLYNDN 123
Query: 786 QNRAKRAVAIALRNRWRRQQITGPLQ---QEITP-KNILMIGPTGVGKT----EIARRLA 837
Q AK V R Q L+ E+ P KN+L+ G G GKT ++
Sbjct: 124 QVFAKYNV-------SRLQPYL-KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 838 KLSNAPFIKIEATKF-TEVGYVGRDVDTI-----------------------IRDLIDIS 873
F KI F + + I+ I
Sbjct: 176 VQCKMDF-KI----FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 874 IKQTREFEINKVRTRA----EDAAEDRVID-------ILVPSKEKSNLDTDFNNENNNIS 922
+ R +K + + + IL+ ++ K TDF +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV--TDFLSAAT--- 285
Query: 923 TRQIFRKRLREGALDNKE--------IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 974
T I L E ++ D + +P + + I+ +
Sbjct: 286 TTHISLDHHSMT-LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 975 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQK----AI-----------------N 1013
N + K+ I+ ++ L E ++ ++ +
Sbjct: 345 DNWKHVNCD-KLTTIIESSLNV-----LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 1014 NVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTT------VNTKYGIIK 1067
++ + ++ ++++ K + Q + IS + +L +E V+ Y I K
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-HYNIPK 457
Query: 1068 T---DHIL----------FIASGAFHL--AKPSDLIPELQGRFPIRVELD 1102
T D ++ I HL + + + F V LD
Sbjct: 458 TFDSDDLIPPYLDQYFYSHI---GHHLKNIEHPERMTL----FR-MVFLD 499
Score = 68.3 bits (166), Expect = 1e-11
Identities = 96/730 (13%), Positives = 222/730 (30%), Gaps = 230/730 (31%)
Query: 281 EFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 340
+FE + + + +D ++ + + + D + + + I K
Sbjct: 8 DFETGEHQYQYKD-----ILSVFEDAFVD---NFDCKDVQD--MPKSILSK--------- 48
Query: 341 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEA 400
+EI+ I+ +F + + +++ +++ ++ ++
Sbjct: 49 EEID----------HIIMSKDAVS---GTLRLFWTLLSKQEEM----VQKFVEEVLRINY 91
Query: 401 NKLLN--EDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRD------- 451
L++ + E +Q ++ ++++ D++ N+N ++ V R
Sbjct: 92 KFLMSPIKTEQRQPSMMTRM-----YIEQRDRL-----YNDNQVFAKYNVSRLQPYLKLR 141
Query: 452 --LLPL--VEGTTVNTKYGIIKT-----------------DHILFIASGAFHLAKPSDLI 490
LL L + ++ G KT I ++ + P ++
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK--NCNSPETVL 199
Query: 491 PELQ---------------GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYE-ALLATEG 534
LQ I++ + S+ ++ R++ S K YE LL
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLKS------KPYENCLL---- 248
Query: 535 IKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVN 594
+ + + +Q A+ N+ + L T + + D+++
Sbjct: 249 --V--LLN-VQN-AKAW-----NAFNLSCKILLT------------TRFKQV---TDFLS 282
Query: 595 S-RLGDLSINEDLSRYDSGMEKFQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVR 653
+ +S++ + + + ++L + D +
Sbjct: 283 AATTTHISLDH----HSMTLTPDEVKSLLLKYLDCRPQ---D---------LPREVLTTN 326
Query: 654 KLYQNQVLAGIAGSTADAFTLLDFFE-ANLEKHQGNLMRASVEL--AKEWRNDRTLRRLE 710
L+ IA S D D ++ N +K ++ +S+ + E+R + RL
Sbjct: 327 PR----RLSIIAESIRDGLATWDNWKHVNCDKLT-TIIESSLNVLEPAEYR--KMFDRL- 378
Query: 711 AMLLTANRETTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKSL 770
++ + I P + I I + ++ +++ K SL
Sbjct: 379 SVF----PPSAHI---------PTILLSLIWFDVIK---------SDVMVVVNKLHKYSL 416
Query: 771 VI---AEIVSEL-DKYVIGQNRAKRAVAIALRNRWRRQ-QITGPLQQEITPKNIL----- 820
V E + Y+ + + K AL I + L
Sbjct: 417 VEKQPKESTISIPSIYL--ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 821 ------MIGPTGVGKTEIARRLAKLSNAPFI--KIEATKFTEVGYVGRDVDTIIRDLIDI 872
+ + + R + + F+ KI +I+ L
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMV--FLDFRFLEQKIRHD-----STAWNASGSILNTLQQ- 526
Query: 873 SIKQTREFEINKVRTRAEDAAEDRVIDIL--VPSKEKSNL----DTD-----FNNENNNI 921
+K + + I + E V IL +P E NL TD E+ I
Sbjct: 527 -LKFYKPY-I----CDNDPKYERLVNAILDFLPKIE-ENLICSKYTDLLRIALMAEDEAI 579
Query: 922 ---STRQIFR 928
+ +Q+ R
Sbjct: 580 FEEAHKQVQR 589
Score = 59.1 bits (142), Expect = 8e-09
Identities = 54/389 (13%), Positives = 107/389 (27%), Gaps = 119/389 (30%)
Query: 850 TKFTEVGYVGRDV-----DTIIRDL--IDI-----SIKQTREF-EINKVRTRAEDAAEDR 896
+ E Y +D+ D + + D+ SI E I + R
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT--LR 66
Query: 897 VIDILVPSKEK-------SNLDTDFN-------NENNN--------ISTR-------QIF 927
+ L+ +E+ L ++ E I R Q+F
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 928 RKR----------LREGALDNKEIEIELNDTGPHMEI----MSPPGMEEMTAQ------I 967
K LR+ L EL P + + G + +
Sbjct: 127 AKYNVSRLQPYLKLRQALL-------ELR---PAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 968 KTMFS--V----IGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVE----- 1016
+ + + N +++ + + ID + + I++++
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 1017 -------QNGIIFLDEI-DK-------------ITTRSSQNNNTDISRAGVQRDLLPLVE 1055
+N ++ L + + +TTR TD A + L
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK--QVTDFLSAATTTHI-SLDH 293
Query: 1056 GTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTS 1115
+ T D + + +P DL E+ P R+ + + SI D + T
Sbjct: 294 HSMTLTP------DEVKSLLLKYLDC-RPQDLPREVLTTNPRRLSIIAESIRDG--LATW 344
Query: 1116 TNVCLTKQYEALLATEGIKIEFVDDGIQR 1144
N + L + ++ R
Sbjct: 345 DNW-KHVNCDKLTTIIESSLNVLEPAEYR 372
Score = 34.1 bits (77), Expect = 0.34
Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 27/107 (25%)
Query: 55 RKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAM 114
+K+ + +GS + L F++ + + + +R + +
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP-------------KYERLVNAILDF 551
Query: 115 LLTANRETTLIITGNGDV----LEPENGIGAIGSGGIFAQSAAKALQ 157
L E LI + D+ L E+ IF + A K +Q
Sbjct: 552 LPKI--EENLICSKYTDLLRIALMAED-------EAIFEE-AHKQVQ 588
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, hydrolase; 3.10A {Rhodococcus
erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Length = 294
Score = 55.4 bits (133), Expect = 4e-08
Identities = 37/150 (24%), Positives = 55/150 (36%), Gaps = 19/150 (12%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
GTTI+++ V L GD + T GN+I + V + AGIAG+ A L+
Sbjct: 65 GTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEY-SAAGIAGTAGIAIELVRL 123
Query: 80 FEANLEKHQGNLMRAS--VELAKEWRN------DRTLRRLEAMLLTA--------NRETT 123
F LE ++ A + ++ L + L
Sbjct: 124 FAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAG 183
Query: 124 LI--ITGNGDVLEPENGIGAIGSGGIFAQS 151
I G E G A+GSG +FA+S
Sbjct: 184 RIVSYDVVGGRYEERAGYHAVGSGSLFAKS 213
Score = 55.4 bits (133), Expect = 4e-08
Identities = 37/150 (24%), Positives = 55/150 (36%), Gaps = 19/150 (12%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 677
GTTI+++ V L GD + T GN+I + V + AGIAG+ A L+
Sbjct: 65 GTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEY-SAAGIAGTAGIAIELVRL 123
Query: 678 FEANLEKHQGNLMRAS--VELAKEWRN------DRTLRRLEAMLLTA--------NRETT 721
F LE ++ A + ++ L + L
Sbjct: 124 FAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAG 183
Query: 722 LI--ITGNGDVLEPENGIGAIGSGGIFAQS 749
I G E G A+GSG +FA+S
Sbjct: 184 RIVSYDVVGGRYEERAGYHAVGSGSLFAKS 213
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB:
3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H*
3h6i_C 3h6f_C 3hf9_H 3mfe_H
Length = 291
Score = 53.8 bits (129), Expect = 1e-07
Identities = 40/155 (25%), Positives = 60/155 (38%), Gaps = 19/155 (12%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
GTTI++++ V + GD + T GN+I +KV GIAG+ A A
Sbjct: 57 GTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDY-TATGIAGTAAVAVEFARL 115
Query: 80 FEANLEKHQGNLMR------ASVELAKEWRNDRTLRR--LEAMLLTA----------NRE 121
+ LE ++ LA R + L A+ L A +
Sbjct: 116 YAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAG 175
Query: 122 TTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKAL 156
+ G E G A+GSG +FA+S+ K L
Sbjct: 176 RIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKL 210
Score = 53.8 bits (129), Expect = 1e-07
Identities = 40/155 (25%), Positives = 60/155 (38%), Gaps = 19/155 (12%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 677
GTTI++++ V + GD + T GN+I +KV GIAG+ A A
Sbjct: 57 GTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDY-TATGIAGTAAVAVEFARL 115
Query: 678 FEANLEKHQGNLMR------ASVELAKEWRNDRTLRR--LEAMLLTA----------NRE 719
+ LE ++ LA R + L A+ L A +
Sbjct: 116 YAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAG 175
Query: 720 TTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKAL 754
+ G E G A+GSG +FA+S+ K L
Sbjct: 176 RIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKL 210
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N*
3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N*
1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N*
3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Length = 205
Score = 52.2 bits (126), Expect = 2e-07
Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 25/152 (16%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
G +I++V + V LG D + T G I K+ +++ + +GS AD + D
Sbjct: 9 GASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDK-IWCCRSGSAADTQAIADI 67
Query: 80 FEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRE---TTLIITGNGDVLEP- 135
+ +LE + S E A + + N++ +I+ G D +
Sbjct: 68 VQYHLELYTSQYGTPSTETA--------ASVFKELCY-ENKDNLTAGIIVAGYDDKNKGE 118
Query: 136 -----------ENGIGAIGSGGIFAQSAAKAL 156
+ GSG F
Sbjct: 119 VYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKN 150
Score = 52.2 bits (126), Expect = 2e-07
Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 25/152 (16%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 677
G +I++V + V LG D + T G I K+ +++ + +GS AD + D
Sbjct: 9 GASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDK-IWCCRSGSAADTQAIADI 67
Query: 678 FEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRE---TTLIITGNGDVLEP- 733
+ +LE + S E A + + N++ +I+ G D +
Sbjct: 68 VQYHLELYTSQYGTPSTETA--------ASVFKELCY-ENKDNLTAGIIVAGYDDKNKGE 118
Query: 734 -----------ENGIGAIGSGGIFAQSAAKAL 754
+ GSG F
Sbjct: 119 VYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKN 150
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_H* 3nzx_H*
Length = 261
Score = 52.3 bits (126), Expect = 3e-07
Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 27/148 (18%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
GTTI+ V+ N V + D + T G ++ + K+ ++ + AG+ AD +
Sbjct: 29 GTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPK-IWCAGAGTAADTEAVTQL 87
Query: 80 FEANLEKHQGNL-MRASVELAKEWRNDRTLRRLEAMLLTANRE---TTLIITGNGDVLEP 135
+N+E H V + ++ L + LI+ G D
Sbjct: 88 IGSNIELHSLYTSREPRV---------VSALQMLKQHLFKYQGHIGAYLIVAG-VDPTGS 137
Query: 136 ------------ENGIGAIGSGGIFAQS 151
++GSG + A +
Sbjct: 138 HLFSIHAHGSTDVGYYLSLGSGSLAAMA 165
Score = 52.3 bits (126), Expect = 3e-07
Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 27/148 (18%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 677
GTTI+ V+ N V + D + T G ++ + K+ ++ + AG+ AD +
Sbjct: 29 GTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPK-IWCAGAGTAADTEAVTQL 87
Query: 678 FEANLEKHQGNL-MRASVELAKEWRNDRTLRRLEAMLLTANRE---TTLIITGNGDVLEP 733
+N+E H V + ++ L + LI+ G D
Sbjct: 88 IGSNIELHSLYTSREPRV---------VSALQMLKQHLFKYQGHIGAYLIVAG-VDPTGS 137
Query: 734 ------------ENGIGAIGSGGIFAQS 749
++GSG + A +
Sbjct: 138 HLFSIHAHGSTDVGYYLSLGSGSLAAMA 165
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H
1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Length = 217
Score = 51.5 bits (124), Expect = 3e-07
Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 23/146 (15%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
GTT + + + V + + +VT N IM + KK+ ++ IAG DA L+ +
Sbjct: 8 GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTY-TGMTIAGLVGDAQVLVRY 66
Query: 80 FEANLEKHQGNL-MRASVE-LAKEWRNDRTLRRLEAMLLTANRETTLIITG--------- 128
+A LE ++ + +E +A N L +++ M L++ G
Sbjct: 67 MKAELELYRLQRRVNMPIEAVATLLSN--MLNQVKYMPYMVQ----LLVGGIDTAPHVFS 120
Query: 129 ---NGDVLEPENGIGAIGSGGIFAQS 151
G + E+ + GSG F
Sbjct: 121 IDAAGGSV--EDIYASTGSGSPFVYG 144
Score = 51.5 bits (124), Expect = 3e-07
Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 23/146 (15%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 677
GTT + + + V + + +VT N IM + KK+ ++ IAG DA L+ +
Sbjct: 8 GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTY-TGMTIAGLVGDAQVLVRY 66
Query: 678 FEANLEKHQGNL-MRASVE-LAKEWRNDRTLRRLEAMLLTANRETTLIITG--------- 726
+A LE ++ + +E +A N L +++ M L++ G
Sbjct: 67 MKAELELYRLQRRVNMPIEAVATLLSN--MLNQVKYMPYMVQ----LLVGGIDTAPHVFS 120
Query: 727 ---NGDVLEPENGIGAIGSGGIFAQS 749
G + E+ + GSG F
Sbjct: 121 IDAAGGSV--EDIYASTGSGSPFVYG 144
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_K* 3nzx_K*
Length = 287
Score = 51.3 bits (123), Expect = 6e-07
Identities = 34/163 (20%), Positives = 58/163 (35%), Gaps = 27/163 (16%)
Query: 604 EDLSRYDSGMEKFQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAG 663
+D D ++ GTT L+ R + + D + T GN + + KKV ++ +L
Sbjct: 61 DDSRNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPF-LLGT 119
Query: 664 IAGSTADAFTLLDFFEANLEKHQGNL-MRASVELAKEWRNDRTLRRLEAMLLTANRETTL 722
+AG AD + + H+ R SV ++ + L+ + L
Sbjct: 120 MAGGAADCQFWETWLGSQCRLHELREKERISVA---------AASKILSNLVYQYKGAGL 170
Query: 723 ----IITGNGDVLEP------------ENGIGAIGSGGIFAQS 749
+I G P + I +GSG FA
Sbjct: 171 SMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYG 213
Score = 51.3 bits (123), Expect = 7e-07
Identities = 32/149 (21%), Positives = 53/149 (35%), Gaps = 27/149 (18%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
GTT L+ R + + D + T GN + + KKV ++ +L +AG AD +
Sbjct: 75 GTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPF-LLGTMAGGAADCQFWETW 133
Query: 80 FEANLEKHQGNL-MRASVELAKEWRNDRTLRRLEAMLLTANRETTL----IITGNGDVLE 134
+ H+ R SV ++ + L+ + L +I G
Sbjct: 134 LGSQCRLHELREKERISVA---------AASKILSNLVYQYKGAGLSMGTMICGYTRKEG 184
Query: 135 P------------ENGIGAIGSGGIFAQS 151
P + I +GSG FA
Sbjct: 185 PTIYYVDSDGTRLKGDIFCVGSGQTFAYG 213
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Length = 235
Score = 51.0 bits (122), Expect = 7e-07
Identities = 37/149 (24%), Positives = 55/149 (36%), Gaps = 19/149 (12%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTI+++ V L GD + T GN+I +KV + AGIAG+ A L+ F
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEY-SAAGIAGTAGIAIELVRLF 59
Query: 81 EANLEKHQGNLMRAS--VELAKEWRN------DRTLRRLEAMLLTA--------NRETTL 124
LE ++ A + ++ L + L
Sbjct: 60 AVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGR 119
Query: 125 I--ITGNGDVLEPENGIGAIGSGGIFAQS 151
I G E G A+GSG +FA+S
Sbjct: 120 IVSYDVVGGRYEERAGYHAVGSGSLFAKS 148
Score = 51.0 bits (122), Expect = 7e-07
Identities = 37/149 (24%), Positives = 55/149 (36%), Gaps = 19/149 (12%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTI+++ V L GD + T GN+I +KV + AGIAG+ A L+ F
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEY-SAAGIAGTAGIAIELVRLF 59
Query: 679 EANLEKHQGNLMRAS--VELAKEWRN------DRTLRRLEAMLLTA--------NRETTL 722
LE ++ A + ++ L + L
Sbjct: 60 AVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGR 119
Query: 723 I--ITGNGDVLEPENGIGAIGSGGIFAQS 749
I G E G A+GSG +FA+S
Sbjct: 120 IVSYDVVGGRYEERAGYHAVGSGSLFAKS 148
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H*
2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H*
3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Length = 222
Score = 50.0 bits (120), Expect = 1e-06
Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 27/147 (18%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTI+ V+ N V + D + T G ++ + K+ ++ + AG+ AD +
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPK-IWCAGAGTAADTEAVTQLI 59
Query: 81 EANLEKHQGNL-MRASVELAKEWRNDRTLRRLEAMLLTANRE---TTLIITGNGDVLEP- 135
+N+E H V + ++ L + LI+ G D
Sbjct: 60 GSNIELHSLYTSREPRV---------VSALQMLKQHLFKYQGHIGAYLIVAG-VDPTGSH 109
Query: 136 -----------ENGIGAIGSGGIFAQS 151
++GSG + A +
Sbjct: 110 LFSIHAHGSTDVGYYLSLGSGSLAAMA 136
Score = 50.0 bits (120), Expect = 1e-06
Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 27/147 (18%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTI+ V+ N V + D + T G ++ + K+ ++ + AG+ AD +
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPK-IWCAGAGTAADTEAVTQLI 59
Query: 679 EANLEKHQGNL-MRASVELAKEWRNDRTLRRLEAMLLTANRE---TTLIITGNGDVLEP- 733
+N+E H V + ++ L + LI+ G D
Sbjct: 60 GSNIELHSLYTSREPRV---------VSALQMLKQHLFKYQGHIGAYLIVAG-VDPTGSH 109
Query: 734 -----------ENGIGAIGSGGIFAQS 749
++GSG + A +
Sbjct: 110 LFSIHAHGSTDVGYYLSLGSGSLAAMA 136
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Length = 204
Score = 49.5 bits (119), Expect = 1e-06
Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 22/145 (15%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TT L+ + + V + D + T G I + KKV ++ +L +AG AD
Sbjct: 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPY-LLGTMAGGAADCSFWERLL 59
Query: 81 EANLEKHQ-GNLMRASVE-LAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEP--- 135
++ N R SV +K N + + + M L+ +I G D P
Sbjct: 60 ARQCRIYELRNKERISVAAASKLLAN--MVYQYKGMGLSMG----TMICG-WDKRGPGLY 112
Query: 136 ---------ENGIGAIGSGGIFAQS 151
++GSG ++A
Sbjct: 113 YVDSEGNRISGATFSVGSGSVYAYG 137
Score = 49.5 bits (119), Expect = 1e-06
Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 22/145 (15%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TT L+ + + V + D + T G I + KKV ++ +L +AG AD
Sbjct: 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPY-LLGTMAGGAADCSFWERLL 59
Query: 679 EANLEKHQ-GNLMRASVE-LAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEP--- 733
++ N R SV +K N + + + M L+ +I G D P
Sbjct: 60 ARQCRIYELRNKERISVAAASKLLAN--MVYQYKGMGLSMG----TMICG-WDKRGPGLY 112
Query: 734 ---------ENGIGAIGSGGIFAQS 749
++GSG ++A
Sbjct: 113 YVDSEGNRISGATFSVGSGSVYAYG 137
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 49.7 bits (119), Expect = 2e-06
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 205 RQQITGPLQQ-----EITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGY 259
+QQ ++L+ GP GKT +A ++A+ SN PFIKI + +G+
Sbjct: 46 LDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM-IGF 104
Query: 260 VGRDVDTIIRDL 271
++ +
Sbjct: 105 SETAKCQAMKKI 116
Score = 49.7 bits (119), Expect = 2e-06
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 803 RQQITGPLQQ-----EITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGY 857
+QQ ++L+ GP GKT +A ++A+ SN PFIKI + +G+
Sbjct: 46 LDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM-IGF 104
Query: 858 VGRDVDTIIRDL 869
++ +
Sbjct: 105 SETAKCQAMKKI 116
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_H* 3une_H
Length = 234
Score = 49.2 bits (118), Expect = 2e-06
Identities = 34/151 (22%), Positives = 52/151 (34%), Gaps = 35/151 (23%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTI V + + LG D + T G V+ + K+ + N + AG+ AD
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPN-IYCCGAGTAADTDMTTQLI 59
Query: 81 EANLEKHQGNLMRASVELAKEWRNDRTLR-----RLEAMLLTANRE---TTLIITGNGDV 132
+NLE H R R R+ +L R L++ G DV
Sbjct: 60 SSNLELH-------------SLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGG-VDV 105
Query: 133 LEP------------ENGIGAIGSGGIFAQS 151
P + +GSG + A +
Sbjct: 106 TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMA 136
Score = 49.2 bits (118), Expect = 2e-06
Identities = 34/151 (22%), Positives = 52/151 (34%), Gaps = 35/151 (23%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTI V + + LG D + T G V+ + K+ + N + AG+ AD
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPN-IYCCGAGTAADTDMTTQLI 59
Query: 679 EANLEKHQGNLMRASVELAKEWRNDRTLR-----RLEAMLLTANRE---TTLIITGNGDV 730
+NLE H R R R+ +L R L++ G DV
Sbjct: 60 SSNLELH-------------SLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGG-VDV 105
Query: 731 LEP------------ENGIGAIGSGGIFAQS 749
P + +GSG + A +
Sbjct: 106 TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMA 136
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I*
1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I*
3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I*
3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Length = 204
Score = 48.4 bits (116), Expect = 3e-06
Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
G ++++ + V++ D ++ ++ + N +K+ V GI G D TL +
Sbjct: 8 GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY--GHVFLGITGLATDVTTLNEM 65
Query: 80 FEANLEKHQ 88
F ++
Sbjct: 66 FRYKTNLYK 74
Score = 48.4 bits (116), Expect = 3e-06
Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 677
G ++++ + V++ D ++ ++ + N +K+ V GI G D TL +
Sbjct: 8 GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY--GHVFLGITGLATDVTTLNEM 65
Query: 678 FEANLEKHQ 686
F ++
Sbjct: 66 FRYKTNLYK 74
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 49.9 bits (120), Expect = 5e-06
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 18/97 (18%)
Query: 179 SELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPK-NILMIGPTGVGKTEIARR 237
L V GQ++A A+ A++ R G L E P + L GPTGVGKTE+ +
Sbjct: 454 DRLKMLVFGQDKAIEALTEAIK-MAR----AG-LGHEHKPVGSFLFAGPTGVGKTEVTVQ 507
Query: 238 LAKLSNAPFIKIEATKFTEV-----------GYVGRD 263
L+K ++ + +++ E GYVG D
Sbjct: 508 LSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFD 544
Score = 49.9 bits (120), Expect = 5e-06
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 18/97 (18%)
Query: 777 SELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPK-NILMIGPTGVGKTEIARR 835
L V GQ++A A+ A++ R G L E P + L GPTGVGKTE+ +
Sbjct: 454 DRLKMLVFGQDKAIEALTEAIK-MAR----AG-LGHEHKPVGSFLFAGPTGVGKTEVTVQ 507
Query: 836 LAKLSNAPFIKIEATKFTEV-----------GYVGRD 861
L+K ++ + +++ E GYVG D
Sbjct: 508 LSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFD 544
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L
1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K*
2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K*
3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Length = 212
Score = 47.6 bits (114), Expect = 6e-06
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TT L+ R + + D + T GN + + K+V ++ +L +AG AD +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPF-LLGTMAGGAADCQFWETWL 59
Query: 81 EANLEKHQ 88
+ H+
Sbjct: 60 GSQCRLHE 67
Score = 47.6 bits (114), Expect = 6e-06
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TT L+ R + + D + T GN + + K+V ++ +L +AG AD +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPF-LLGTMAGGAADCQFWETWL 59
Query: 679 EANLEKHQ 686
+ H+
Sbjct: 60 GSQCRLHE 67
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP:
d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Length = 213
Score = 47.6 bits (114), Expect = 7e-06
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
G TIL++ + + D +++ G I + K KL ++ + G +G D TL
Sbjct: 9 GGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKL-TDKTVIGCSGFHGDCLTLTKI 67
Query: 80 FEANLEKHQ 88
EA L+ ++
Sbjct: 68 IEARLKMYK 76
Score = 47.6 bits (114), Expect = 7e-06
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 677
G TIL++ + + D +++ G I + K KL ++ + G +G D TL
Sbjct: 9 GGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKL-TDKTVIGCSGFHGDCLTLTKI 67
Query: 678 FEANLEKHQ 686
EA L+ ++
Sbjct: 68 IEARLKMYK 76
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP:
d.153.1.4 PDB: 3unb_N* 3une_N
Length = 205
Score = 46.8 bits (112), Expect = 9e-06
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTI++V+ V LG D + T G+ I K+ ++ + +GS AD + D
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDR-IFCCRSGSAADTQAVADAV 59
Query: 81 EANLEKHQ 88
L H
Sbjct: 60 TYQLGFHS 67
Score = 46.8 bits (112), Expect = 9e-06
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTI++V+ V LG D + T G+ I K+ ++ + +GS AD + D
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDR-IFCCRSGSAADTQAVADAV 59
Query: 679 EANLEKHQ 686
L H
Sbjct: 60 TYQLGFHS 67
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M*
1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L*
2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L*
3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Length = 222
Score = 47.0 bits (112), Expect = 1e-05
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
G TIL + + L GD + I KV + ++ G AD L+
Sbjct: 9 GGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDC-GDNIVMSANGFAADGDALVKR 67
Query: 80 FEANLEKHQ 88
F+ +++ +
Sbjct: 68 FKNSVKWYH 76
Score = 47.0 bits (112), Expect = 1e-05
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 677
G TIL + + L GD + I KV + ++ G AD L+
Sbjct: 9 GGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDC-GDNIVMSANGFAADGDALVKR 67
Query: 678 FEANLEKHQ 686
F+ +++ +
Sbjct: 68 FKNSVKWYH 76
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K
1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J*
2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J*
3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Length = 198
Score = 46.0 bits (110), Expect = 2e-05
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 14/99 (14%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
IL +R + V L VT G ++K+S K R+L + L AG D ++
Sbjct: 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPH-TLMSFAGEAGDTVQFAEYI 60
Query: 81 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTAN 119
+AN++ + R D L
Sbjct: 61 QANIQLY-------------SIREDYELSPQAVSSFVRQ 86
Score = 46.0 bits (110), Expect = 2e-05
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 14/99 (14%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
IL +R + V L VT G ++K+S K R+L + L AG D ++
Sbjct: 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPH-TLMSFAGEAGDTVQFAEYI 60
Query: 679 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTAN 717
+AN++ + R D L
Sbjct: 61 QANIQLY-------------SIREDYELSPQAVSSFVRQ 86
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_N
Length = 199
Score = 46.0 bits (110), Expect = 2e-05
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTI++V V +G D +V+ G ++ K+ L+Q + ++GS ADA + D
Sbjct: 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQR-IFCALSGSAADAQAIADMA 59
Query: 81 EANLEKHQ 88
LE H
Sbjct: 60 AYQLELHG 67
Score = 46.0 bits (110), Expect = 2e-05
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTI++V V +G D +V+ G ++ K+ L+Q + ++GS ADA + D
Sbjct: 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQR-IFCALSGSAADAQAIADMA 59
Query: 679 EANLEKHQ 686
LE H
Sbjct: 60 AYQLELHG 67
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB;
2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Length = 202
Score = 46.0 bits (110), Expect = 2e-05
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TT + + + V + + + T GN I +AKK+ ++ + AGS DA L
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADR-MAMTTAGSVGDAQFLARII 59
Query: 81 EANLEKHQ 88
+ ++
Sbjct: 60 KIEANLYE 67
Score = 46.0 bits (110), Expect = 2e-05
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TT + + + V + + + T GN I +AKK+ ++ + AGS DA L
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADR-MAMTTAGSVGDAQFLARII 59
Query: 679 EANLEKHQ 686
+ ++
Sbjct: 60 KIEANLYE 67
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP:
d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Length = 219
Score = 46.1 bits (110), Expect = 2e-05
Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
GT++L V+ V + D ++G++ + ++ ++ + + G +G AD L
Sbjct: 8 GTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNS-TMLGASGDYADFQYLKQV 66
Query: 80 FEANLEKHQ 88
+ +
Sbjct: 67 LGQMVIDEE 75
Score = 46.1 bits (110), Expect = 2e-05
Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 677
GT++L V+ V + D ++G++ + ++ ++ + + G +G AD L
Sbjct: 8 GTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNS-TMLGASGDYADFQYLKQV 66
Query: 678 FEANLEKHQ 686
+ +
Sbjct: 67 LGQMVIDEE 75
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP:
d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Length = 205
Score = 46.0 bits (110), Expect = 2e-05
Identities = 11/73 (15%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 16 EKFQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFT 75
+ G +++++ N V++ D + ++ +K+ + + G+AG D T
Sbjct: 4 MSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDR-LYIGLAGLATDVQT 62
Query: 76 LLDFFEANLEKHQ 88
+ + L ++
Sbjct: 63 VAQRLKFRLNLYE 75
Score = 46.0 bits (110), Expect = 2e-05
Identities = 11/73 (15%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 614 EKFQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFT 673
+ G +++++ N V++ D + ++ +K+ + + G+AG D T
Sbjct: 4 MSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDR-LYIGLAGLATDVQT 62
Query: 674 LLDFFEANLEKHQ 686
+ + L ++
Sbjct: 63 VAQRLKFRLNLYE 75
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 46.1 bits (110), Expect = 2e-05
Identities = 4/68 (5%), Positives = 14/68 (20%), Gaps = 1/68 (1%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
+ + V ++ + + VR+ + A
Sbjct: 2 SHMQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTA-IGIACKDGVVLAVDRRITS 60
Query: 81 EANLEKHQ 88
+ +
Sbjct: 61 KLVKIRSI 68
Score = 46.1 bits (110), Expect = 2e-05
Identities = 4/68 (5%), Positives = 14/68 (20%), Gaps = 1/68 (1%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
+ + V ++ + + VR+ + A
Sbjct: 2 SHMQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTA-IGIACKDGVVLAVDRRITS 60
Query: 679 EANLEKHQ 686
+ +
Sbjct: 61 KLVKIRSI 68
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP:
d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Length = 201
Score = 45.7 bits (109), Expect = 2e-05
Identities = 11/68 (16%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
++ ++ + V + D V MK+ K+ K+ + +L G D ++
Sbjct: 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLC-VGEAGDTVQFAEYI 60
Query: 81 EANLEKHQ 88
+ N++ ++
Sbjct: 61 QKNVQLYK 68
Score = 45.7 bits (109), Expect = 2e-05
Identities = 11/68 (16%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
++ ++ + V + D V MK+ K+ K+ + +L G D ++
Sbjct: 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLC-VGEAGDTVQFAEYI 60
Query: 679 EANLEKHQ 686
+ N++ ++
Sbjct: 61 QKNVQLYK 68
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold,
hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 47.0 bits (112), Expect = 3e-05
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 17/83 (20%)
Query: 174 IAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTE 233
I+ + S L+K + ++ A R +A ++ +++ ++GP G+ K+
Sbjct: 13 ISRLSSSLEKGLYERSHAIRLCLLAA----------------LSGESVFLLGPPGIAKSL 56
Query: 234 IARRLAK-LSNAPFIKIEATKFT 255
IARRL NA + T+F+
Sbjct: 57 IARRLKFAFQNARAFEYLMTRFS 79
Score = 47.0 bits (112), Expect = 3e-05
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 17/83 (20%)
Query: 772 IAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTE 831
I+ + S L+K + ++ A R +A ++ +++ ++GP G+ K+
Sbjct: 13 ISRLSSSLEKGLYERSHAIRLCLLAA----------------LSGESVFLLGPPGIAKSL 56
Query: 832 IARRLAK-LSNAPFIKIEATKFT 853
IARRL NA + T+F+
Sbjct: 57 IARRLKFAFQNARAFEYLMTRFS 79
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus
thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Length = 311
Score = 46.0 bits (110), Expect = 3e-05
Identities = 31/62 (50%), Positives = 39/62 (62%), Gaps = 7/62 (11%)
Query: 179 SELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPK-NILMIGPTGVGKTEIARR 237
EL K V+GQ+ A RAVA A+R R R G L+ P + L +GPTGVGKTE+A+
Sbjct: 13 EELHKRVVGQDEAIRAVADAIR-RAR----AG-LKDPNRPIGSFLFLGPTGVGKTELAKT 66
Query: 238 LA 239
LA
Sbjct: 67 LA 68
Score = 46.0 bits (110), Expect = 3e-05
Identities = 31/62 (50%), Positives = 39/62 (62%), Gaps = 7/62 (11%)
Query: 777 SELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPK-NILMIGPTGVGKTEIARR 835
EL K V+GQ+ A RAVA A+R R R G L+ P + L +GPTGVGKTE+A+
Sbjct: 13 EELHKRVVGQDEAIRAVADAIR-RAR----AG-LKDPNRPIGSFLFLGPTGVGKTELAKT 66
Query: 836 LA 837
LA
Sbjct: 67 LA 68
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease,
NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP:
d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M*
3nzj_M* 3nzw_M* 3nzx_M*
Length = 266
Score = 45.5 bits (108), Expect = 5e-05
Identities = 13/69 (18%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
GT+++S++ N V + D ++G+++ N +++ + N + GI+G +D +
Sbjct: 41 GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDN-TVVGISGDISDMQHIERL 99
Query: 80 FEANLEKHQ 88
+ + ++
Sbjct: 100 LKDLVTENA 108
Score = 45.5 bits (108), Expect = 5e-05
Identities = 13/69 (18%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 677
GT+++S++ N V + D ++G+++ N +++ + N + GI+G +D +
Sbjct: 41 GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDN-TVVGISGDISDMQHIERL 99
Query: 678 FEANLEKHQ 686
+ + ++
Sbjct: 100 LKDLVTENA 108
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N*
1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M*
2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M*
3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Length = 233
Score = 44.6 bits (106), Expect = 7e-05
Identities = 13/69 (18%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
GT+++S++ N V + D ++G+++ N +++ + N + GI+G +D +
Sbjct: 8 GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDN-TVVGISGDISDMQHIERL 66
Query: 80 FEANLEKHQ 88
+ + ++
Sbjct: 67 LKDLVTENA 75
Score = 44.6 bits (106), Expect = 7e-05
Identities = 13/69 (18%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 677
GT+++S++ N V + D ++G+++ N +++ + N + GI+G +D +
Sbjct: 8 GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDN-TVVGISGDISDMQHIERL 66
Query: 678 FEANLEKHQ 686
+ + ++
Sbjct: 67 LKDLVTENA 75
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 45.6 bits (109), Expect = 1e-04
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 11/65 (16%)
Query: 179 SELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNI---LMIGPTGVGKTEIA 235
+ L VIGQ+ A AVA A+R R R G L+ P I + +GPTGVGKTE+A
Sbjct: 487 NILHSRVIGQDEAVVAVAKAVR-RAR----AG-LKDPKRP--IGSFIFLGPTGVGKTELA 538
Query: 236 RRLAK 240
R LA+
Sbjct: 539 RALAE 543
Score = 45.6 bits (109), Expect = 1e-04
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 11/65 (16%)
Query: 777 SELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNI---LMIGPTGVGKTEIA 833
+ L VIGQ+ A AVA A+R R R G L+ P I + +GPTGVGKTE+A
Sbjct: 487 NILHSRVIGQDEAVVAVAKAVR-RAR----AG-LKDPKRP--IGSFIFLGPTGVGKTELA 538
Query: 834 RRLAK 838
R LA+
Sbjct: 539 RALAE 543
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 44.4 bits (104), Expect = 1e-04
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 14/99 (14%)
Query: 174 IAEIVSELDKYVIGQNRAKRAV----AIALRNRWRRQQITGPLQQEITPKNILMIGPTGV 229
E++ ELD+ +IG K + A+ L R R++ L E ++ G G
Sbjct: 22 AKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKL---GLAHETPTLHMSFTGNPGT 78
Query: 230 GKTEIARRLAK-------LSNAPFIKIEATKFTEVGYVG 261
GKT +A ++A + + +
Sbjct: 79 GKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGH 117
Score = 44.4 bits (104), Expect = 1e-04
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 14/99 (14%)
Query: 772 IAEIVSELDKYVIGQNRAKRAV----AIALRNRWRRQQITGPLQQEITPKNILMIGPTGV 827
E++ ELD+ +IG K + A+ L R R++ L E ++ G G
Sbjct: 22 AKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKL---GLAHETPTLHMSFTGNPGT 78
Query: 828 GKTEIARRLAK-------LSNAPFIKIEATKFTEVGYVG 859
GKT +A ++A + + +
Sbjct: 79 GKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGH 117
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 45.1 bits (107), Expect = 1e-04
Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 19/156 (12%)
Query: 158 ENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEIT 217
E E + I + E+ +L VIGQ A + A
Sbjct: 16 EYGESLELGIEFTTTEEIEVPEKLIDQVIGQEHAVEVIKTAANQ---------------- 59
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIK 277
+++L+IG G GK+ + + +A+L ++ + T+ ++
Sbjct: 60 KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVE 119
Query: 278 QTREFEINKVRTRA---EDAAEDRVIDILVPSKEKS 310
+ RE ++ ++ + V +LV + ++
Sbjct: 120 KYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRT 155
Score = 45.1 bits (107), Expect = 1e-04
Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 19/156 (12%)
Query: 756 ENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEIT 815
E E + I + E+ +L VIGQ A + A
Sbjct: 16 EYGESLELGIEFTTTEEIEVPEKLIDQVIGQEHAVEVIKTAANQ---------------- 59
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIK 875
+++L+IG G GK+ + + +A+L ++ + T+ ++
Sbjct: 60 KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVE 119
Query: 876 QTREFEINKVRTRA---EDAAEDRVIDILVPSKEKS 908
+ RE ++ ++ + V +LV + ++
Sbjct: 120 KYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRT 155
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 44.8 bits (107), Expect = 1e-04
Identities = 38/92 (41%), Positives = 45/92 (48%), Gaps = 34/92 (36%)
Query: 174 IAEIVS-----------------------ELDKYVIGQNRAKRAVAIALRNRWRRQQITG 210
IAEIVS EL K V+GQ+ A RAVA A+R R R G
Sbjct: 526 IAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIR-RAR----AG 580
Query: 211 PLQQEITPKNI---LMIGPTGVGKTEIARRLA 239
L+ P I L +GPTGVGKTE+A+ LA
Sbjct: 581 -LKDPNRP--IGSFLFLGPTGVGKTELAKTLA 609
Score = 44.8 bits (107), Expect = 1e-04
Identities = 38/92 (41%), Positives = 45/92 (48%), Gaps = 34/92 (36%)
Query: 772 IAEIVS-----------------------ELDKYVIGQNRAKRAVAIALRNRWRRQQITG 808
IAEIVS EL K V+GQ+ A RAVA A+R R R G
Sbjct: 526 IAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIR-RAR----AG 580
Query: 809 PLQQEITPKNI---LMIGPTGVGKTEIARRLA 837
L+ P I L +GPTGVGKTE+A+ LA
Sbjct: 581 -LKDPNRP--IGSFLFLGPTGVGKTELAKTLA 609
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 43.1 bits (102), Expect = 3e-04
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261
PK +LM+GP G GKT +A+ +A + PF I + F E+ +VG
Sbjct: 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVG 87
Score = 43.1 bits (102), Expect = 3e-04
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859
PK +LM+GP G GKT +A+ +A + PF I + F E+ +VG
Sbjct: 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVG 87
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 42.7 bits (101), Expect = 3e-04
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261
PK +L++GP GVGKT +AR +A + PFI + F E+ +VG
Sbjct: 49 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVG 91
Score = 42.7 bits (101), Expect = 3e-04
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859
PK +L++GP GVGKT +AR +A + PFI + F E+ +VG
Sbjct: 49 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVG 91
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 42.7 bits (101), Expect = 4e-04
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261
PK +L++GP GVGKT +AR +A + PFI + F E+ +VG
Sbjct: 73 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVG 115
Score = 42.7 bits (101), Expect = 4e-04
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859
PK +L++GP GVGKT +AR +A + PFI + F E+ +VG
Sbjct: 73 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVG 115
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 42.0 bits (98), Expect = 4e-04
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 189 NRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFI 247
+ V + N + + +TG ++++++G +G GKT IA +A + F
Sbjct: 5 HHHSSGVDLGTENLYFQSMMTGE-----PTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58
Score = 42.0 bits (98), Expect = 4e-04
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 787 NRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFI 845
+ V + N + + +TG ++++++G +G GKT IA +A + F
Sbjct: 5 HHHSSGVDLGTENLYFQSMMTGE-----PTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A
3n2e_A*
Length = 168
Score = 41.0 bits (97), Expect = 6e-04
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 15/60 (25%)
Query: 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQ 278
+++++IG G GK+ +A+ L + D D II + + +S+++
Sbjct: 8 QHLVLIGFMGSGKSSLAQELGLALKLEVL---------------DTDMIISERVGLSVRE 52
Score = 41.0 bits (97), Expect = 6e-04
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 15/60 (25%)
Query: 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQ 876
+++++IG G GK+ +A+ L + D D II + + +S+++
Sbjct: 8 QHLVLIGFMGSGKSSLAQELGLALKLEVL---------------DTDMIISERVGLSVRE 52
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_H
Length = 234
Score = 41.9 bits (99), Expect = 6e-04
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTI + + V LG D + T +V+ S +K+ + + AG AD
Sbjct: 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPK-IYCCGAGVAADTEMTTRMA 59
Query: 81 EANLEKHQ 88
+ +E H
Sbjct: 60 ASKMELHA 67
Score = 41.9 bits (99), Expect = 6e-04
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTI + + V LG D + T +V+ S +K+ + + AG AD
Sbjct: 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPK-IYCCGAGVAADTEMTTRMA 59
Query: 679 EANLEKHQ 686
+ +E H
Sbjct: 60 ASKMELHA 67
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A
{Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 41.0 bits (97), Expect = 7e-04
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQ 278
KNI+ IG G GK+ +AR LAK + F+ D D +I + + +
Sbjct: 5 KNIVFIGFMGSGKSTLARALAKDLDLVFL---------------DSDFLIEQKFNQKVSE 49
Score = 41.0 bits (97), Expect = 7e-04
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQ 876
KNI+ IG G GK+ +AR LAK + F+ D D +I + + +
Sbjct: 5 KNIVFIGFMGSGKSTLARALAKDLDLVFL---------------DSDFLIEQKFNQKVSE 49
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 42.5 bits (100), Expect = 7e-04
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 26/118 (22%)
Query: 185 VIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPK--NILMIGPTGVGKTEIARRLAKLS 242
++GQ K A+ + + P +L+ G G GK+ R LA L
Sbjct: 26 IVGQEDMKLALLLTA----------------VDPGIGGVLVFGDRGTGKSTAVRALAAL- 68
Query: 243 NAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVI 300
P +IEA + V ++ ++ ++ + V +EDRV+
Sbjct: 69 -LP--EIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPT----PVVDLPLGVSEDRVV 119
Score = 42.5 bits (100), Expect = 7e-04
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 26/118 (22%)
Query: 783 VIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPK--NILMIGPTGVGKTEIARRLAKLS 840
++GQ K A+ + + P +L+ G G GK+ R LA L
Sbjct: 26 IVGQEDMKLALLLTA----------------VDPGIGGVLVFGDRGTGKSTAVRALAAL- 68
Query: 841 NAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVI 898
P +IEA + V ++ ++ ++ + V +EDRV+
Sbjct: 69 -LP--EIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPT----PVVDLPLGVSEDRVV 119
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 42.9 bits (101), Expect = 8e-04
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 28/105 (26%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIK 277
P+ IL+ GP G GKT IAR +A + A F I +I K
Sbjct: 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGP--------------------EIMSK 277
Query: 278 QTREFEINKVRTRAEDAAED-------RVIDILVPSKEKSNLDTD 315
E E + +R E+A ++ +D + P +EK++ + +
Sbjct: 278 LAGESE-SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE 321
Score = 42.9 bits (101), Expect = 8e-04
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 28/105 (26%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIK 875
P+ IL+ GP G GKT IAR +A + A F I +I K
Sbjct: 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGP--------------------EIMSK 277
Query: 876 QTREFEINKVRTRAEDAAED-------RVIDILVPSKEKSNLDTD 913
E E + +R E+A ++ +D + P +EK++ + +
Sbjct: 278 LAGESE-SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE 321
Score = 39.4 bits (92), Expect = 0.007
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249
K +L GP G GKT +A+ +A A FI I
Sbjct: 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISI 542
Score = 39.4 bits (92), Expect = 0.007
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 847
K +L GP G GKT +A+ +A A FI I
Sbjct: 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISI 542
Score = 34.0 bits (78), Expect = 0.35
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 18/98 (18%)
Query: 408 EIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI 467
+ ++A N IIF+DE+D I + + + R Q LL L++ G+
Sbjct: 288 KAFEEAEKN--APAIIFIDELDAIAPKREKTHGEVERRIVSQ--LLTLMD--------GL 335
Query: 468 IKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVEL 503
+ H++ +A+ +P+ + P L+ GRF V++
Sbjct: 336 KQRAHVIVMAAT----NRPNSIDPALRRFGRFDREVDI 369
Score = 34.0 bits (78), Expect = 0.35
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 18/98 (18%)
Query: 1006 EIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI 1065
+ ++A N IIF+DE+D I + + + R Q LL L++ G+
Sbjct: 288 KAFEEAEKN--APAIIFIDELDAIAPKREKTHGEVERRIVSQ--LLTLMD--------GL 335
Query: 1066 IKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVEL 1101
+ H++ +A+ +P+ + P L+ GRF V++
Sbjct: 336 KQRAHVIVMAAT----NRPNSIDPALRRFGRFDREVDI 369
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia chrysanthemi}
SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 40.6 bits (96), Expect = 8e-04
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247
+ I M+G G G T + R LA+ F+
Sbjct: 2 TEPIFMVGARGCGMTTVGRELARALGYEFV 31
Score = 40.6 bits (96), Expect = 8e-04
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845
+ I M+G G G T + R LA+ F+
Sbjct: 2 TEPIFMVGARGCGMTTVGRELARALGYEFV 31
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 42.1 bits (99), Expect = 9e-04
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 12/128 (9%)
Query: 134 EPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKY----VIGQN 189
+NG G A + E + + ++I+ L++ EI+ + G
Sbjct: 33 GEQNGGMQCKPYGAGPTEPAHPVDERLKNLEPKMIE--LIMNEIMDHGPPVNWEDIAGVE 90
Query: 190 RAKRAV--AIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFI 247
AK + + R TG PK IL+ GP G GKT I + +A S A F
Sbjct: 91 FAKATIKEIVVWPM-LRPDIFTGLRG---PPKGILLFGPPGTGKTLIGKCIASQSGATFF 146
Query: 248 KIEATKFT 255
I A+ T
Sbjct: 147 SISASSLT 154
Score = 42.1 bits (99), Expect = 9e-04
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 12/128 (9%)
Query: 732 EPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKY----VIGQN 787
+NG G A + E + + ++I+ L++ EI+ + G
Sbjct: 33 GEQNGGMQCKPYGAGPTEPAHPVDERLKNLEPKMIE--LIMNEIMDHGPPVNWEDIAGVE 90
Query: 788 RAKRAV--AIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFI 845
AK + + R TG PK IL+ GP G GKT I + +A S A F
Sbjct: 91 FAKATIKEIVVWPM-LRPDIFTGLRG---PPKGILLFGPPGTGKTLIGKCIASQSGATFF 146
Query: 846 KIEATKFT 853
I A+ T
Sbjct: 147 SISASSLT 154
Score = 29.3 bits (66), Expect = 8.7
Identities = 20/119 (16%), Positives = 50/119 (42%), Gaps = 18/119 (15%)
Query: 422 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAF 481
+IF+DEID + ++ + R ++ + L ++G T +++ D IL + +
Sbjct: 179 VIFIDEIDSLLSQRGDGEHESSRR--IKTEFLVQLDGATTSSE------DRILVVGA--- 227
Query: 482 HLAKPSDLIPELQGRFPIRVELDSLSISD----FTRIMTSTNVCLTKQYEALLA--TEG 534
+P ++ + R R+ + S +M+ CL+++ + ++
Sbjct: 228 -TNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDA 285
Score = 29.3 bits (66), Expect = 8.7
Identities = 20/119 (16%), Positives = 50/119 (42%), Gaps = 18/119 (15%)
Query: 1020 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAF 1079
+IF+DEID + ++ + R ++ + L ++G T +++ D IL + +
Sbjct: 179 VIFIDEIDSLLSQRGDGEHESSRR--IKTEFLVQLDGATTSSE------DRILVVGA--- 227
Query: 1080 HLAKPSDLIPELQGRFPIRVELDSLSISD----FTRIMTSTNVCLTKQYEALLA--TEG 1132
+P ++ + R R+ + S +M+ CL+++ + ++
Sbjct: 228 -TNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDA 285
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 41.5 bits (98), Expect = 0.001
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261
PK +L++GP G GKT +A+ +A ++ PF + + F E+ +VG
Sbjct: 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVG 86
Score = 41.5 bits (98), Expect = 0.001
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859
PK +L++GP G GKT +A+ +A ++ PF + + F E+ +VG
Sbjct: 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVG 86
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 40.3 bits (94), Expect = 0.001
Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 16/87 (18%)
Query: 217 TPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISI 276
TP I++ G GKT +++ LA P + D + D
Sbjct: 4 TPALIIVTGHPATGKTTLSQALATGLRLPLL---------------SKDAFKEVMFDGLG 48
Query: 277 KQTREFEINKVRTRAEDAAEDRVIDIL 303
RE+ +V A IL
Sbjct: 49 WSDREWS-RRVGATAIMMLYHTAATIL 74
Score = 40.3 bits (94), Expect = 0.001
Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 16/87 (18%)
Query: 815 TPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISI 874
TP I++ G GKT +++ LA P + D + D
Sbjct: 4 TPALIIVTGHPATGKTTLSQALATGLRLPLL---------------SKDAFKEVMFDGLG 48
Query: 875 KQTREFEINKVRTRAEDAAEDRVIDIL 901
RE+ +V A IL
Sbjct: 49 WSDREWS-RRVGATAIMMLYHTAATIL 74
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 41.7 bits (98), Expect = 0.001
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251
P+ IL+ GP G GKT IAR +A + A F I
Sbjct: 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLING 271
Score = 41.7 bits (98), Expect = 0.001
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 849
P+ IL+ GP G GKT IAR +A + A F I
Sbjct: 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLING 271
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 40.3 bits (95), Expect = 0.001
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 219 KNILMIGPTGVGKTEIARRLAKLSNAPFI 247
NI +IG G GKT + +LAKL+
Sbjct: 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILY 34
Score = 40.3 bits (95), Expect = 0.001
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 817 KNILMIGPTGVGKTEIARRLAKLSNAPFI 845
NI +IG G GKT + +LAKL+
Sbjct: 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILY 34
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 39.8 bits (94), Expect = 0.001
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 219 KNILMIGPTGVGKTEIARRLAKLSNAPFI 247
+NI ++GP G GK+ I R+LA+ N F
Sbjct: 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33
Score = 39.8 bits (94), Expect = 0.001
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 817 KNILMIGPTGVGKTEIARRLAKLSNAPFI 845
+NI ++GP G GK+ I R+LA+ N F
Sbjct: 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 40.3 bits (95), Expect = 0.001
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 219 KNILMIGPTGVGKTEIARRLAKLSNAPFI 247
+++G G GK+ I RRLAK +
Sbjct: 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLL 31
Score = 40.3 bits (95), Expect = 0.001
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 817 KNILMIGPTGVGKTEIARRLAKLSNAPFI 845
+++G G GK+ I RRLAK +
Sbjct: 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLL 31
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 39.6 bits (92), Expect = 0.002
Identities = 39/143 (27%), Positives = 54/143 (37%), Gaps = 18/143 (12%)
Query: 210 GPL--QQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRD--VD 265
GPL + + NIL+ G GVGKT + + LA S +I + E Y G D D
Sbjct: 1 GPLGSPEFMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYD 60
Query: 266 TIIRDLIDISIKQTREFEINK---VRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNN 322
I D D + + V D +R I+ L TD N
Sbjct: 61 CPILD-EDRVVDELDNQMREGGVIVDYHGCDFFPERWFHIVF------VLRTDTNVLYER 113
Query: 323 ISTRQIFRKRLREGALDNKEIEI 345
+ TR K+L + N + EI
Sbjct: 114 LETRGYNEKKLTD----NIQCEI 132
Score = 39.6 bits (92), Expect = 0.002
Identities = 39/143 (27%), Positives = 54/143 (37%), Gaps = 18/143 (12%)
Query: 808 GPL--QQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRD--VD 863
GPL + + NIL+ G GVGKT + + LA S +I + E Y G D D
Sbjct: 1 GPLGSPEFMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYD 60
Query: 864 TIIRDLIDISIKQTREFEINK---VRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNN 920
I D D + + V D +R I+ L TD N
Sbjct: 61 CPILD-EDRVVDELDNQMREGGVIVDYHGCDFFPERWFHIVF------VLRTDTNVLYER 113
Query: 921 ISTRQIFRKRLREGALDNKEIEI 943
+ TR K+L + N + EI
Sbjct: 114 LETRGYNEKKLTD----NIQCEI 132
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 40.3 bits (95), Expect = 0.002
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261
PK L++GP G GKT +A+ +A + PF+ + +F EV G
Sbjct: 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEV-IGG 81
Score = 40.3 bits (95), Expect = 0.002
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859
PK L++GP G GKT +A+ +A + PF+ + +F EV G
Sbjct: 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEV-IGG 81
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 39.3 bits (92), Expect = 0.002
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 219 KNILMIGPTGVGKTEIARRLAKLSNAPFI 247
I++ GP K+ +A +L+K P I
Sbjct: 2 TLIILEGPDCCFKSTVAAKLSKELKYPII 30
Score = 39.3 bits (92), Expect = 0.002
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 817 KNILMIGPTGVGKTEIARRLAKLSNAPFI 845
I++ GP K+ +A +L+K P I
Sbjct: 2 TLIILEGPDCCFKSTVAAKLSKELKYPII 30
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 39.7 bits (92), Expect = 0.002
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 211 PLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254
+ ++ +L+ G G GK+ IA LA L P + +
Sbjct: 2 NMTDDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45
Score = 39.7 bits (92), Expect = 0.002
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 809 PLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 852
+ ++ +L+ G G GK+ IA LA L P + +
Sbjct: 2 NMTDDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 40.3 bits (95), Expect = 0.003
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249
PK IL+ GP G GKT +A+ +A +NA FI++
Sbjct: 51 PKGILLYGPPGTGKTLLAKAVATETNATFIRV 82
Score = 40.3 bits (95), Expect = 0.003
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 847
PK IL+ GP G GKT +A+ +A +NA FI++
Sbjct: 51 PKGILLYGPPGTGKTLLAKAVATETNATFIRV 82
Score = 29.5 bits (67), Expect = 5.7
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 422 IIFLDEIDKI-TTRSSQNNNTDISRAGVQRDLLPLV 456
IIF+DEID I R+ D VQR L+ L+
Sbjct: 113 IIFIDEIDAIAAKRTDALTGGD---REVQRTLMQLL 145
Score = 29.5 bits (67), Expect = 5.7
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 1020 IIFLDEIDKI-TTRSSQNNNTDISRAGVQRDLLPLV 1054
IIF+DEID I R+ D VQR L+ L+
Sbjct: 113 IIFIDEIDAIAAKRTDALTGGD---REVQRTLMQLL 145
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 39.9 bits (94), Expect = 0.004
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 7/52 (13%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTE--VGYVG----RD 263
PK +L++GP GVGKT +AR +A + PFI + F E VG VG RD
Sbjct: 64 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVG-VGAARVRD 114
Score = 39.9 bits (94), Expect = 0.004
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 7/52 (13%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTE--VGYVG----RD 861
PK +L++GP GVGKT +AR +A + PFI + F E VG VG RD
Sbjct: 64 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVG-VGAARVRD 114
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 39.8 bits (93), Expect = 0.004
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFT 255
+ +L+ GP G GKT +A+ +A SNA F I A T
Sbjct: 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT 185
Score = 39.8 bits (93), Expect = 0.004
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFT 853
+ +L+ GP G GKT +A+ +A SNA F I A T
Sbjct: 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT 185
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 38.5 bits (89), Expect = 0.005
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 211 PLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFI 247
P +I+++G +G GK+ + +A+ PFI
Sbjct: 11 AAAVRRFPGSIVVMGVSGSGKSSVGEAIAEACGYPFI 47
Score = 38.5 bits (89), Expect = 0.005
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 809 PLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFI 845
P +I+++G +G GK+ + +A+ PFI
Sbjct: 11 AAAVRRFPGSIVVMGVSGSGKSSVGEAIAEACGYPFI 47
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 39.2 bits (92), Expect = 0.006
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251
K +L+ GP G GKT +AR +A +A F+ I A
Sbjct: 54 AKGLLLFGPPGNGKTLLARAVATECSATFLNISA 87
Score = 39.2 bits (92), Expect = 0.006
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 849
K +L+ GP G GKT +AR +A +A F+ I A
Sbjct: 54 AKGLLLFGPPGNGKTLLARAVATECSATFLNISA 87
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 39.4 bits (93), Expect = 0.006
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 223 MI--GPTGVGKTEIARRLAKLSNAPFIKIEAT 252
MI GP G GKT +A +A+ +NA +I A
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISAV 84
Score = 39.4 bits (93), Expect = 0.006
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 821 MI--GPTGVGKTEIARRLAKLSNAPFIKIEAT 850
MI GP G GKT +A +A+ +NA +I A
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISAV 84
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 38.4 bits (90), Expect = 0.007
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 219 KNILMIGPTGVGKTEIARRLAKLSNAPFI 247
I + G G GKT + + A+ N PFI
Sbjct: 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFI 54
Score = 38.4 bits (90), Expect = 0.007
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 817 KNILMIGPTGVGKTEIARRLAKLSNAPFI 845
I + G G GKT + + A+ N PFI
Sbjct: 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFI 54
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 39.5 bits (93), Expect = 0.007
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 7/52 (13%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTE--VGYVG----RD 263
PK IL++GP G GKT +AR +A +N PF I + F E VG VG RD
Sbjct: 49 PKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVG-VGAARVRD 99
Score = 39.5 bits (93), Expect = 0.007
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 7/52 (13%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTE--VGYVG----RD 861
PK IL++GP G GKT +AR +A +N PF I + F E VG VG RD
Sbjct: 49 PKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVG-VGAARVRD 99
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 37.8 bits (87), Expect = 0.007
Identities = 12/79 (15%), Positives = 22/79 (27%)
Query: 217 TPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISI 276
T + I++ G + GK+ I R L + P++ E + +
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGG 61
Query: 277 KQTREFEINKVRTRAEDAA 295
AE
Sbjct: 62 VSIGPEFRALEGAWAEGVV 80
Score = 37.8 bits (87), Expect = 0.007
Identities = 12/79 (15%), Positives = 22/79 (27%)
Query: 815 TPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISI 874
T + I++ G + GK+ I R L + P++ E + +
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGG 61
Query: 875 KQTREFEINKVRTRAEDAA 893
AE
Sbjct: 62 VSIGPEFRALEGAWAEGVV 80
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop
kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex
aeolicus}
Length = 168
Score = 37.1 bits (87), Expect = 0.010
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 15/59 (25%)
Query: 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQ 278
I +IG GK+ + L++ N PF DVD ++ +SI Q
Sbjct: 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFY---------------DVDEEVQKREGLSIPQ 45
Score = 37.1 bits (87), Expect = 0.010
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 15/59 (25%)
Query: 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQ 876
I +IG GK+ + L++ N PF DVD ++ +SI Q
Sbjct: 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFY---------------DVDEEVQKREGLSIPQ 45
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 37.9 bits (88), Expect = 0.015
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 185 VIGQNRAKR----AVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAK 240
V G AK AV + ++ G + IL+ GP G GK+ +A+ +A
Sbjct: 53 VAGLEGAKEALKEAVILPVK---FPHLFKGNRK---PTSGILLYGPPGTGKSYLAKAVAT 106
Query: 241 LSNAPFIKIEA 251
+N+ F + +
Sbjct: 107 EANSTFFSVSS 117
Score = 37.9 bits (88), Expect = 0.015
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 783 VIGQNRAKR----AVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAK 838
V G AK AV + ++ G + IL+ GP G GK+ +A+ +A
Sbjct: 53 VAGLEGAKEALKEAVILPVK---FPHLFKGNRK---PTSGILLYGPPGTGKSYLAKAVAT 106
Query: 839 LSNAPFIKIEA 849
+N+ F + +
Sbjct: 107 EANSTFFSVSS 117
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 38.0 bits (88), Expect = 0.015
Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 18/118 (15%)
Query: 185 VIGQNRAKRAVAI---ALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAK- 240
++GQ A+ A + ++++ ++ + +L+ GP G GKT +A +A+
Sbjct: 39 LVGQENAREACGVIVELIKSK------------KMAGRAVLLAGPPGTGKTALALAIAQE 86
Query: 241 -LSNAPFIKIEATKFTEVGYVG-RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 296
S PF + ++ + R I + IK+T+E +V E
Sbjct: 87 LGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETE 144
Score = 38.0 bits (88), Expect = 0.015
Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 18/118 (15%)
Query: 783 VIGQNRAKRAVAI---ALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAK- 838
++GQ A+ A + ++++ ++ + +L+ GP G GKT +A +A+
Sbjct: 39 LVGQENAREACGVIVELIKSK------------KMAGRAVLLAGPPGTGKTALALAIAQE 86
Query: 839 -LSNAPFIKIEATKFTEVGYVG-RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 894
S PF + ++ + R I + IK+T+E +V E
Sbjct: 87 LGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETE 144
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat
ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 37.0 bits (86), Expect = 0.020
Identities = 7/36 (19%), Positives = 19/36 (52%)
Query: 212 LQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFI 247
++ + +++ ++G G GKT + + +A+ F
Sbjct: 42 VKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFF 77
Score = 37.0 bits (86), Expect = 0.020
Identities = 7/36 (19%), Positives = 19/36 (52%)
Query: 810 LQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFI 845
++ + +++ ++G G GKT + + +A+ F
Sbjct: 42 VKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFF 77
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis;
HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB:
2ze5_A* 2ze7_A* 2ze8_A
Length = 253
Score = 37.1 bits (86), Expect = 0.024
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 219 KNILMIGPTGVGKTEIARRLAKLSNAPFI 247
L+ GPT GKT++A ++A+ + P +
Sbjct: 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVV 30
Score = 37.1 bits (86), Expect = 0.024
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 817 KNILMIGPTGVGKTEIARRLAKLSNAPFI 845
L+ GPT GKT++A ++A+ + P +
Sbjct: 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVV 30
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 37.1 bits (86), Expect = 0.027
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIK 277
P + + G G GK+ + + I + A + E G G + +IR + +
Sbjct: 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL-ESGNAG-EPAKLIRQRYREAAE 93
Query: 278 QTRE 281
R+
Sbjct: 94 IIRK 97
Score = 37.1 bits (86), Expect = 0.027
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIK 875
P + + G G GK+ + + I + A + E G G + +IR + +
Sbjct: 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL-ESGNAG-EPAKLIRQRYREAAE 93
Query: 876 QTRE 879
R+
Sbjct: 94 IIRK 97
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 37.2 bits (86), Expect = 0.031
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 12/70 (17%)
Query: 182 DKY-------VIGQNRAKRAVAIALRNRWRRQQITGPLQQEITP----KNILMIGPTGVG 230
KY V G + + L N W + + ++ GP G+G
Sbjct: 31 VKYAPTNLQQVCGNKGSVMKLKNWLAN-WENSKKNSFKHAGKDGSGVFRAAMLYGPPGIG 89
Query: 231 KTEIARRLAK 240
KT A +A+
Sbjct: 90 KTTAAHLVAQ 99
Score = 37.2 bits (86), Expect = 0.031
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 12/70 (17%)
Query: 780 DKY-------VIGQNRAKRAVAIALRNRWRRQQITGPLQQEITP----KNILMIGPTGVG 828
KY V G + + L N W + + ++ GP G+G
Sbjct: 31 VKYAPTNLQQVCGNKGSVMKLKNWLAN-WENSKKNSFKHAGKDGSGVFRAAMLYGPPGIG 89
Query: 829 KTEIARRLAK 838
KT A +A+
Sbjct: 90 KTTAAHLVAQ 99
>2r44_A Uncharacterized protein; putative ATPase, structural genomics,
joint center for struc genomics, JCSG; HET: MSE PG4;
2.00A {Cytophaga hutchinsonii atcc 33406}
Length = 331
Score = 36.7 bits (86), Expect = 0.041
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 165 DEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMI 224
++ + I E++ E+ K V+GQ + I + T +IL+
Sbjct: 9 EKSLYYRNKIKEVIDEVGKVVVGQKYMINRLLIGI----------------CTGGHILLE 52
Query: 225 GPTGVGKTEIARRLAKLSNAPFIKIEAT 252
G G+ KT LAK + F +I+ T
Sbjct: 53 GVPGLAKTLSVNTLAKTMDLDFHRIQFT 80
Score = 36.7 bits (86), Expect = 0.041
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 763 DEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMI 822
++ + I E++ E+ K V+GQ + I + T +IL+
Sbjct: 9 EKSLYYRNKIKEVIDEVGKVVVGQKYMINRLLIGI----------------CTGGHILLE 52
Query: 823 GPTGVGKTEIARRLAKLSNAPFIKIEAT 850
G G+ KT LAK + F +I+ T
Sbjct: 53 GVPGLAKTLSVNTLAKTMDLDFHRIQFT 80
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 36.2 bits (84), Expect = 0.048
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251
IL+ GP G GK+ +A+ +A +N+ F + +
Sbjct: 51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 84
Score = 36.2 bits (84), Expect = 0.048
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 849
IL+ GP G GK+ +A+ +A +N+ F + +
Sbjct: 51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 84
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 36.0 bits (84), Expect = 0.054
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249
P +L+ GP G GKT +A+ +A S FI +
Sbjct: 44 PAGVLLAGPPGCGKTLLAKAVANESGLNFISV 75
Score = 36.0 bits (84), Expect = 0.054
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 847
P +L+ GP G GKT +A+ +A S FI +
Sbjct: 44 PAGVLLAGPPGCGKTLLAKAVANESGLNFISV 75
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 36.1 bits (84), Expect = 0.057
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249
K +L GP G GKT +A+ +A A FI I
Sbjct: 49 SKGVLFYGPPGCGKTLLAKAIANECQANFISI 80
Score = 36.1 bits (84), Expect = 0.057
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 847
K +L GP G GKT +A+ +A A FI I
Sbjct: 49 SKGVLFYGPPGCGKTLLAKAIANECQANFISI 80
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 34.6 bits (79), Expect = 0.092
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 213 QQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFI 247
+++G +G GK+ +A +A +A F+
Sbjct: 3 TTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFL 37
Score = 34.6 bits (79), Expect = 0.092
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 811 QQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFI 845
+++G +G GK+ +A +A +A F+
Sbjct: 3 TTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFL 37
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 35.2 bits (82), Expect = 0.11
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 218 PKNILMIGPTGVGKTEIARRLAK 240
PK I ++GPT GKT +A L K
Sbjct: 10 PKAIFLMGPTASGKTALAIELRK 32
Score = 35.2 bits (82), Expect = 0.11
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 816 PKNILMIGPTGVGKTEIARRLAK 838
PK I ++GPT GKT +A L K
Sbjct: 10 PKAIFLMGPTASGKTALAIELRK 32
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 35.2 bits (82), Expect = 0.11
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 218 PKNILMIGPTGVGKTEIARRLAK 240
P I ++GPT GKT++A LA
Sbjct: 5 PPAIFLMGPTAAGKTDLAMALAD 27
Score = 35.2 bits (82), Expect = 0.11
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 816 PKNILMIGPTGVGKTEIARRLAK 838
P I ++GPT GKT++A LA
Sbjct: 5 PPAIFLMGPTAAGKTDLAMALAD 27
>2bjv_A PSP operon transcriptional activator; AAA, transcription
activation, gene regulation, sigma54 activator, enhancer
binding protein, PSPF; 1.7A {Escherichia coli} PDB:
2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Length = 265
Score = 34.8 bits (81), Expect = 0.11
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 217 TPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKI 249
K +L+IG G GK IA RL LS PFI +
Sbjct: 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63
Score = 34.8 bits (81), Expect = 0.11
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 815 TPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKI 847
K +L+IG G GK IA RL LS PFI +
Sbjct: 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Length = 322
Score = 35.2 bits (82), Expect = 0.12
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 217 TPKNILMIGPTGVGKTEIARRLAK 240
K + ++GPT VGKT+ + LAK
Sbjct: 2 KEKLVAIVGPTAVGKTKTSVMLAK 25
Score = 35.2 bits (82), Expect = 0.12
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 815 TPKNILMIGPTGVGKTEIARRLAK 838
K + ++GPT VGKT+ + LAK
Sbjct: 2 KEKLVAIVGPTAVGKTKTSVMLAK 25
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP;
2.37A {Humulus lupulus}
Length = 339
Score = 34.9 bits (80), Expect = 0.13
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 205 RQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAK 240
++ Q+ K ++++G TG GK+ ++ LA
Sbjct: 27 TTNVSLRRQRHRKEKLLVLMGATGTGKSRLSIDLAA 62
Score = 34.9 bits (80), Expect = 0.13
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 803 RQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAK 838
++ Q+ K ++++G TG GK+ ++ LA
Sbjct: 27 TTNVSLRRQRHRKEKLLVLMGATGTGKSRLSIDLAA 62
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.13
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 11/39 (28%)
Query: 381 KKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAIN-NVE 418
K+ K K++ ++KL D+ A L AI +E
Sbjct: 19 KQALK-KLQASLKLYADDSAPAL---------AIKATME 47
Score = 33.8 bits (76), Expect = 0.13
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 11/39 (28%)
Query: 979 KKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAIN-NVE 1016
K+ K K++ ++KL D+ A L AI +E
Sbjct: 19 KQALK-KLQASLKLYADDSAPAL---------AIKATME 47
Score = 32.2 bits (72), Expect = 0.43
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 7/28 (25%)
Query: 231 KTEIARRLA---KL---SNAPFIKIEAT 252
K + ++L KL +AP + I+AT
Sbjct: 19 KQAL-KKLQASLKLYADDSAPALAIKAT 45
Score = 32.2 bits (72), Expect = 0.43
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 7/28 (25%)
Query: 829 KTEIARRLA---KL---SNAPFIKIEAT 850
K + ++L KL +AP + I+AT
Sbjct: 19 KQAL-KKLQASLKLYADDSAPALAIKAT 45
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228}
Length = 340
Score = 34.8 bits (81), Expect = 0.16
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 218 PKNILMIGPTGVGKTEIARRLAK 240
P I+++GPT GKTE++ +AK
Sbjct: 7 PFLIVIVGPTASGKTELSIEVAK 29
Score = 34.8 bits (81), Expect = 0.16
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 816 PKNILMIGPTGVGKTEIARRLAK 838
P I+++GPT GKTE++ +AK
Sbjct: 7 PFLIVIVGPTASGKTELSIEVAK 29
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia
coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E*
1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 34.7 bits (80), Expect = 0.16
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 206 QQITGPLQQEITPKNILMIGPTGVGKTEIARRLAK 240
+++ Q +L+ G+G + L++
Sbjct: 12 EKLVASYQAGRGHHALLIQALPGMGDDALIYALSR 46
Score = 34.7 bits (80), Expect = 0.16
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 804 QQITGPLQQEITPKNILMIGPTGVGKTEIARRLAK 838
+++ Q +L+ G+G + L++
Sbjct: 12 EKLVASYQAGRGHHALLIQALPGMGDDALIYALSR 46
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 34.6 bits (80), Expect = 0.17
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 217 TPKNILMIGPTGVGKTEIARRLAK 240
+ K I++ G TGVGK++++ +LA+
Sbjct: 1 SKKVIVIAGTTGVGKSQLSIQLAQ 24
Score = 34.6 bits (80), Expect = 0.17
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 815 TPKNILMIGPTGVGKTEIARRLAK 838
+ K I++ G TGVGK++++ +LA+
Sbjct: 1 SKKVIVIAGTTGVGKSQLSIQLAQ 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 34.9 bits (80), Expect = 0.17
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSN-APFIKIEATKFT 255
+ IL+ GP G GK+ +A+ +A +N + F I ++
Sbjct: 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205
Score = 34.9 bits (80), Expect = 0.17
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSN-APFIKIEATKFT 853
+ IL+ GP G GK+ +A+ +A +N + F I ++
Sbjct: 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 34.3 bits (79), Expect = 0.21
Identities = 15/106 (14%), Positives = 28/106 (26%), Gaps = 23/106 (21%)
Query: 150 QSAAKALQENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVA---IALRNRWRRQ 206
+ Q + + V+ E + + +K + + L
Sbjct: 14 EERTYPPQIPAQQELGDFSAYQSVLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEA 73
Query: 207 QITGP------LQQEIT--------------PKNILMIGPTGVGKT 232
LQ+ + K I++ G TG GKT
Sbjct: 74 GGLTEENVVGKLQEILCDMLPSADKWQEPIHSKYIVLFGSTGAGKT 119
Score = 34.3 bits (79), Expect = 0.21
Identities = 15/106 (14%), Positives = 28/106 (26%), Gaps = 23/106 (21%)
Query: 748 QSAAKALQENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVA---IALRNRWRRQ 804
+ Q + + V+ E + + +K + + L
Sbjct: 14 EERTYPPQIPAQQELGDFSAYQSVLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEA 73
Query: 805 QITGP------LQQEIT--------------PKNILMIGPTGVGKT 830
LQ+ + K I++ G TG GKT
Sbjct: 74 GGLTEENVVGKLQEILCDMLPSADKWQEPIHSKYIVLFGSTGAGKT 119
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 33.9 bits (78), Expect = 0.28
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSN-APFIKIEA 251
+ IL+ GP G GK+ +A+ +A +N + F I +
Sbjct: 45 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 79
Score = 33.9 bits (78), Expect = 0.28
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSN-APFIKIEA 849
+ IL+ GP G GK+ +A+ +A +N + F I +
Sbjct: 45 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 79
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 33.9 bits (77), Expect = 0.28
Identities = 13/77 (16%), Positives = 32/77 (41%)
Query: 221 ILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTR 280
++++G G GK+ IA L ++ N + + + R + +++ +
Sbjct: 27 VILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQPNK 86
Query: 281 EFEINKVRTRAEDAAED 297
E+ + + +D ED
Sbjct: 87 VAEMIENQGLFKDHVED 103
Score = 33.9 bits (77), Expect = 0.28
Identities = 13/77 (16%), Positives = 32/77 (41%)
Query: 819 ILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTR 878
++++G G GK+ IA L ++ N + + + R + +++ +
Sbjct: 27 VILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQPNK 86
Query: 879 EFEINKVRTRAEDAAED 895
E+ + + +D ED
Sbjct: 87 VAEMIENQGLFKDHVED 103
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET:
ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 33.4 bits (76), Expect = 0.38
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 185 VIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN 243
++GQ A+RA + L R +I G + +L+ G G GKT IA +A+
Sbjct: 46 MVGQLAARRAAGVVL-EMIREGKIAG--------RAVLIAGQPGTGKTAIAMGMAQALG 95
Score = 33.4 bits (76), Expect = 0.38
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 783 VIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN 841
++GQ A+RA + L R +I G + +L+ G G GKT IA +A+
Sbjct: 46 MVGQLAARRAAGVVL-EMIREGKIAG--------RAVLIAGQPGTGKTAIAMGMAQALG 95
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 33.7 bits (77), Expect = 0.39
Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 193 RAVAIALRNRWRRQQITG-PLQQEITPKNILMIGPTGVGKT 232
+ R + ++ + G P+ ++ P+++L+ G TG GK+
Sbjct: 27 GKLKRMTREKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKS 67
Score = 33.7 bits (77), Expect = 0.39
Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 791 RAVAIALRNRWRRQQITG-PLQQEITPKNILMIGPTGVGKT 830
+ R + ++ + G P+ ++ P+++L+ G TG GK+
Sbjct: 27 GKLKRMTREKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKS 67
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 32.4 bits (73), Expect = 0.46
Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 3/134 (2%)
Query: 214 QEITPKNILMIGPTGVGKTEIARRLA-KLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLI 272
++ NIL+ G G GKT +A +A +L +++ Y D + +I
Sbjct: 6 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYD-TELDTHII 64
Query: 273 DISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKR 332
+ + + + + D L P + ++ + + R R+
Sbjct: 65 EEKDEDRLLDFMEPIMVSRGNHVVDYHSSELFP-ERWFHMVVVLHTSTEVLFERLTKRQY 123
Query: 333 LREGALDNKEIEIE 346
+N E EI+
Sbjct: 124 SEAKRAENMEAEIQ 137
Score = 32.4 bits (73), Expect = 0.46
Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 3/134 (2%)
Query: 812 QEITPKNILMIGPTGVGKTEIARRLA-KLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLI 870
++ NIL+ G G GKT +A +A +L +++ Y D + +I
Sbjct: 6 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYD-TELDTHII 64
Query: 871 DISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKR 930
+ + + + + D L P + ++ + + R R+
Sbjct: 65 EEKDEDRLLDFMEPIMVSRGNHVVDYHSSELFP-ERWFHMVVVLHTSTEVLFERLTKRQY 123
Query: 931 LREGALDNKEIEIE 944
+N E EI+
Sbjct: 124 SEAKRAENMEAEIQ 137
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 32.8 bits (74), Expect = 0.60
Identities = 34/260 (13%), Positives = 76/260 (29%), Gaps = 20/260 (7%)
Query: 211 PLQQEITPKNILMIGPTGVGKTEIARRLAK-LSNAPFIKIEATKFTEVGYVGRDVDTIIR 269
+ + L +G TG GKT +++ + + E + R+V +
Sbjct: 38 YFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97
Query: 270 DLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKE---KSNLDTDFNNENNNISTR 326
++ + F + K D++ + + +DT +I
Sbjct: 98 AVLSSLAGKLTGFSVPK-HGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLY 156
Query: 327 QIFRKRLREG------ALDNKE-IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNH 379
Q+ R ++ ++ +E + + I P E++ +
Sbjct: 157 QLLRSDANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYA-----E 211
Query: 380 RKKTRKIKIREAIKLL---IDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSS 436
+ E + + +E + +A GII + +DK
Sbjct: 212 YGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE 271
Query: 437 QNNNTDISRAGVQRDLLPLV 456
Q + +A L L
Sbjct: 272 QERLIEAVKALPFHYKLALR 291
Score = 32.8 bits (74), Expect = 0.60
Identities = 34/260 (13%), Positives = 76/260 (29%), Gaps = 20/260 (7%)
Query: 809 PLQQEITPKNILMIGPTGVGKTEIARRLAK-LSNAPFIKIEATKFTEVGYVGRDVDTIIR 867
+ + L +G TG GKT +++ + + E + R+V +
Sbjct: 38 YFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97
Query: 868 DLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKE---KSNLDTDFNNENNNISTR 924
++ + F + K D++ + + +DT +I
Sbjct: 98 AVLSSLAGKLTGFSVPK-HGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLY 156
Query: 925 QIFRKRLREG------ALDNKE-IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNH 977
Q+ R ++ ++ +E + + I P E++ +
Sbjct: 157 QLLRSDANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYA-----E 211
Query: 978 RKKTRKIKIREAIKLL---IDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSS 1034
+ E + + +E + +A GII + +DK
Sbjct: 212 YGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE 271
Query: 1035 QNNNTDISRAGVQRDLLPLV 1054
Q + +A L L
Sbjct: 272 QERLIEAVKALPFHYKLALR 291
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 32.7 bits (74), Expect = 0.62
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 214 QEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 260
+ + L++G GK+ I + N P+I ++ KF E Y+
Sbjct: 26 KGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI 72
Score = 32.7 bits (74), Expect = 0.62
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 812 QEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 858
+ + L++G GK+ I + N P+I ++ KF E Y+
Sbjct: 26 KGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI 72
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 31.8 bits (72), Expect = 0.70
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
Query: 219 KNILMIGPTGVGKTEIARRLAKLSNAPFI------KIEATKFTEVGYVGRDVDTIIRDLI 272
K ++ GP GVGK+ +RLA + + ++ + I
Sbjct: 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNI 62
Query: 273 DISIKQTREFEINKV 287
+ + V
Sbjct: 63 TDLTVNFLLAQNDVV 77
Score = 31.8 bits (72), Expect = 0.70
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
Query: 817 KNILMIGPTGVGKTEIARRLAKLSNAPFI------KIEATKFTEVGYVGRDVDTIIRDLI 870
K ++ GP GVGK+ +RLA + + ++ + I
Sbjct: 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNI 62
Query: 871 DISIKQTREFEINKV 885
+ + V
Sbjct: 63 TDLTVNFLLAQNDVV 77
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase
domains, sensor 1, sensor 2, transferase; HET: DNA;
2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Length = 250
Score = 32.2 bits (74), Expect = 0.75
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 222 LMIGPTGVGKTEIARRLAKLSN 243
L G GVGKT IAR LAK N
Sbjct: 49 LFSGTRGVGKTSIARLLAKGLN 70
Score = 32.2 bits (74), Expect = 0.75
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 820 LMIGPTGVGKTEIARRLAKLSN 841
L G GVGKT IAR LAK N
Sbjct: 49 LFSGTRGVGKTSIARLLAKGLN 70
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 32.1 bits (73), Expect = 0.78
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 221 ILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTR 280
I++ G GVGK+ ++ LAK+ + I + +G D+ IR+ + ++
Sbjct: 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVI--------VLGSDL---IRESFPVWKEKYE 55
Query: 281 EFEINKVRTRAEDAAEDRVI 300
EF + A ++ +
Sbjct: 56 EFIKKSTYRLIDSALKNYWV 75
Score = 32.1 bits (73), Expect = 0.78
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 819 ILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTR 878
I++ G GVGK+ ++ LAK+ + I + +G D+ IR+ + ++
Sbjct: 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVI--------VLGSDL---IRESFPVWKEKYE 55
Query: 879 EFEINKVRTRAEDAAEDRVI 898
EF + A ++ +
Sbjct: 56 EFIKKSTYRLIDSALKNYWV 75
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural
genomics, center for structural genomics; 2.80A
{Escherichia coli}
Length = 145
Score = 30.9 bits (71), Expect = 0.94
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 217 TPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEAT 252
T + + G G G+ AR L + F+ E T
Sbjct: 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELT 61
Score = 30.9 bits (71), Expect = 0.94
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 815 TPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEAT 850
T + + G G G+ AR L + F+ E T
Sbjct: 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELT 61
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp,
clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A
{Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B*
3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Length = 373
Score = 31.8 bits (73), Expect = 1.2
Identities = 13/19 (68%), Positives = 13/19 (68%)
Query: 222 LMIGPTGVGKTEIARRLAK 240
L G GVGKT IAR LAK
Sbjct: 42 LFSGTRGVGKTSIARLLAK 60
Score = 31.8 bits (73), Expect = 1.2
Identities = 13/19 (68%), Positives = 13/19 (68%)
Query: 820 LMIGPTGVGKTEIARRLAK 838
L G GVGKT IAR LAK
Sbjct: 42 LFSGTRGVGKTSIARLLAK 60
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 31.7 bits (71), Expect = 1.4
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 217 TPKNILMIGPTGVGKT----EIARRLAKLSNAPFIKIEATKFT 255
++G G GKT ++ + A F+ I +
Sbjct: 43 HYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85
Score = 31.7 bits (71), Expect = 1.4
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 815 TPKNILMIGPTGVGKT----EIARRLAKLSNAPFIKIEATKFT 853
++G G GKT ++ + A F+ I +
Sbjct: 43 HYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 30.8 bits (69), Expect = 1.5
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDL 271
+++ + GP GVGKT + + +++ + + ++ EV GR + + L
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTL 54
Score = 30.8 bits (69), Expect = 1.5
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDL 869
+++ + GP GVGKT + + +++ + + ++ EV GR + + L
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTL 54
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 31.7 bits (71), Expect = 1.6
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 213 QQEITP----KNILMIGPTGVGKTEIARRLAK 240
Q+ I N L++ PTG+GKT IA +A+
Sbjct: 14 QEVIYAKCKETNCLIVLPTGLGKTLIAMMIAE 45
Score = 31.7 bits (71), Expect = 1.6
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 811 QQEITP----KNILMIGPTGVGKTEIARRLAK 838
Q+ I N L++ PTG+GKT IA +A+
Sbjct: 14 QEVIYAKCKETNCLIVLPTGLGKTLIAMMIAE 45
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 30.7 bits (69), Expect = 1.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 217 TPKNILMIGPTGVGKTEIARRLAKL 241
I + GP GVGKT A L +
Sbjct: 4 RSPIIWINGPFGVGKTHTAHTLHER 28
Score = 30.7 bits (69), Expect = 1.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 815 TPKNILMIGPTGVGKTEIARRLAKL 839
I + GP GVGKT A L +
Sbjct: 4 RSPIIWINGPFGVGKTHTAHTLHER 28
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 30.9 bits (70), Expect = 1.6
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 213 QQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLI 272
+EI K I+ GP GKT L + + + + R T+ D +
Sbjct: 10 NREINFK-IVYYGPGLSGKTTN---LKWIYSKVPEGRKGEMVSLATEDER---TLFFDFL 62
Query: 273 DISIKQTREFEIN 285
+ I + + F+
Sbjct: 63 PLDIGEVKGFKTR 75
Score = 30.9 bits (70), Expect = 1.6
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 811 QQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLI 870
+EI K I+ GP GKT L + + + + R T+ D +
Sbjct: 10 NREINFK-IVYYGPGLSGKTTN---LKWIYSKVPEGRKGEMVSLATEDER---TLFFDFL 62
Query: 871 DISIKQTREFEIN 883
+ I + + F+
Sbjct: 63 PLDIGEVKGFKTR 75
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 30.6 bits (70), Expect = 2.2
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 218 PKNILMIGPTGVGKTEIARRL 238
K +++IG +GVG++ I L
Sbjct: 19 RKTLVLIGASGVGRSHIKNAL 39
Score = 30.6 bits (70), Expect = 2.2
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 816 PKNILMIGPTGVGKTEIARRL 836
K +++IG +GVG++ I L
Sbjct: 19 RKTLVLIGASGVGRSHIKNAL 39
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 31.3 bits (72), Expect = 2.4
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 10/49 (20%)
Query: 202 RWRRQQITGPLQQEITPKNIL-MIGPTGVGKTEIARRLAKLSNAPFIKI 249
+ + + GP IL + GP GVGKT +A+ +AK F++I
Sbjct: 100 QKLTKSLKGP---------ILCLAGPPGVGKTSLAKSIAKSLGRKFVRI 139
Score = 31.3 bits (72), Expect = 2.4
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 10/49 (20%)
Query: 800 RWRRQQITGPLQQEITPKNIL-MIGPTGVGKTEIARRLAKLSNAPFIKI 847
+ + + GP IL + GP GVGKT +A+ +AK F++I
Sbjct: 100 QKLTKSLKGP---------ILCLAGPPGVGKTSLAKSIAKSLGRKFVRI 139
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 30.0 bits (68), Expect = 2.5
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 12/57 (21%)
Query: 181 LDKYVIGQNRAKRAVAIALR--NRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
LD Y RA+ + + ++ K + +G GVGKT +A
Sbjct: 9 LDTYHPKNVSQNRALLTIRVFVHNFNPEE----------GKGLTFVGSPGVGKTHLA 55
Score = 30.0 bits (68), Expect = 2.5
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 12/57 (21%)
Query: 779 LDKYVIGQNRAKRAVAIALR--NRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 833
LD Y RA+ + + ++ K + +G GVGKT +A
Sbjct: 9 LDTYHPKNVSQNRALLTIRVFVHNFNPEE----------GKGLTFVGSPGVGKTHLA 55
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 30.0 bits (67), Expect = 2.7
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIS 275
I++ G GVGKT + +++ + I +TE +I
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGF----WTEEVRDPETKKRTGFRIITTE 53
Score = 30.0 bits (67), Expect = 2.7
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIS 873
I++ G GVGKT + +++ + I +TE +I
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGF----WTEEVRDPETKKRTGFRIITTE 53
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 30.1 bits (69), Expect = 2.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 221 ILMIGPTGVGKTEIARRL 238
++++G GVG+ I L
Sbjct: 8 LVLLGAHGVGRRHIKNTL 25
Score = 30.1 bits (69), Expect = 2.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 819 ILMIGPTGVGKTEIARRL 836
++++G GVG+ I L
Sbjct: 8 LVLLGAHGVGRRHIKNTL 25
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 30.0 bits (68), Expect = 3.0
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 7/60 (11%)
Query: 181 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAK 240
L + + +A+ A ++ + K + + G GVGKT + +A
Sbjct: 24 LSDVDLNDDGRIKAIRFA-------ERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN 76
Score = 30.0 bits (68), Expect = 3.0
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 7/60 (11%)
Query: 779 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAK 838
L + + +A+ A ++ + K + + G GVGKT + +A
Sbjct: 24 LSDVDLNDDGRIKAIRFA-------ERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN 76
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 30.8 bits (69), Expect = 3.2
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 217 TPKNILMIGPTGVGKT----EIARRLAKLSNAPFIKIE 250
P NI + G TG GKT + +L K F +
Sbjct: 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVY 81
Score = 30.8 bits (69), Expect = 3.2
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 815 TPKNILMIGPTGVGKT----EIARRLAKLSNAPFIKIE 848
P NI + G TG GKT + +L K F +
Sbjct: 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVY 81
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H
RNA-binding helicase, innate immunity, IFIH1, S
genomics; 1.60A {Homo sapiens}
Length = 216
Score = 30.2 bits (68), Expect = 3.5
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 213 QQEIT-----PKNILMIGPTGVGKTEIARRLAK 240
Q E+ KNI++ PTG GKT +A +AK
Sbjct: 38 QMEVAQPALEGKNIIICLPTGSGKTRVAVYIAK 70
Score = 30.2 bits (68), Expect = 3.5
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 811 QQEIT-----PKNILMIGPTGVGKTEIARRLAK 838
Q E+ KNI++ PTG GKT +A +AK
Sbjct: 38 QMEVAQPALEGKNIIICLPTGSGKTRVAVYIAK 70
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 29.7 bits (67), Expect = 3.6
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 218 PKNILMIGPTGVGKTEIARRLAK 240
K IL IG G GK+ AR
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIA 24
Score = 29.7 bits (67), Expect = 3.6
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 816 PKNILMIGPTGVGKTEIARRLAK 838
K IL IG G GK+ AR
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIA 24
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 30.0 bits (67), Expect = 3.8
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 218 PKNILMIGPTGVGKTEIARRLAK 240
K IL IG G GK+ AR
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIA 24
Score = 30.0 bits (67), Expect = 3.8
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 816 PKNILMIGPTGVGKTEIARRLAK 838
K IL IG G GK+ AR
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIA 24
>1ezw_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin
reductase; (beta, alpha)8 barrel, TIM barrel,
oxidoreductase; 1.65A {Methanopyrus kandleri} SCOP:
c.1.16.3
Length = 349
Score = 30.1 bits (68), Expect = 4.9
Identities = 10/77 (12%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 112 EAMLLTANRETTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKS 171
+ + I+ G+ DV+ +GI + I L+ +++I+
Sbjct: 239 DKAIEATKIVVAFIVMGSPDVVLERHGIDTEKAEQIAEAIGKGDFGTAIGLVDEDMIEAF 298
Query: 172 LVI---AEIVSELDKYV 185
+ +V ++++ +
Sbjct: 299 SIAGDPDTVVDKIEELL 315
Score = 30.1 bits (68), Expect = 4.9
Identities = 10/77 (12%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 710 EAMLLTANRETTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKS 769
+ + I+ G+ DV+ +GI + I L+ +++I+
Sbjct: 239 DKAIEATKIVVAFIVMGSPDVVLERHGIDTEKAEQIAEAIGKGDFGTAIGLVDEDMIEAF 298
Query: 770 LVI---AEIVSELDKYV 783
+ +V ++++ +
Sbjct: 299 SIAGDPDTVVDKIEELL 315
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 29.9 bits (66), Expect = 5.0
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254
P IL+ G +G GKT I R K + I+ F
Sbjct: 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68
Score = 29.9 bits (66), Expect = 5.0
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 852
P IL+ G +G GKT I R K + I+ F
Sbjct: 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Length = 556
Score = 29.9 bits (66), Expect = 5.3
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 213 QQEITP-----KNILMIGPTGVGKTEIARRLAK 240
Q E+ KN L+ PTG GKT ++ + +
Sbjct: 12 QIELAQPAINGKNALICAPTGSGKTFVSILICE 44
Score = 29.9 bits (66), Expect = 5.3
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 811 QQEITP-----KNILMIGPTGVGKTEIARRLAK 838
Q E+ KN L+ PTG GKT ++ + +
Sbjct: 12 QIELAQPAINGKNALICAPTGSGKTFVSILICE 44
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 30.3 bits (68), Expect = 5.4
Identities = 8/69 (11%), Positives = 22/69 (31%), Gaps = 6/69 (8%)
Query: 72 DAFTLLDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTAN------RETTLI 125
TL ++++L +++ E + L+ + T + +
Sbjct: 132 TELTLGSIWDSDLARNENIYREVITAAQGEIALEEFLKGVREFWTTLELDLVNYQRKCKL 191
Query: 126 ITGNGDVLE 134
+ G D+
Sbjct: 192 VRGWDDLFN 200
Score = 30.3 bits (68), Expect = 5.4
Identities = 8/69 (11%), Positives = 22/69 (31%), Gaps = 6/69 (8%)
Query: 670 DAFTLLDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTAN------RETTLI 723
TL ++++L +++ E + L+ + T + +
Sbjct: 132 TELTLGSIWDSDLARNENIYREVITAAQGEIALEEFLKGVREFWTTLELDLVNYQRKCKL 191
Query: 724 ITGNGDVLE 732
+ G D+
Sbjct: 192 VRGWDDLFN 200
Score = 30.3 bits (68), Expect = 6.1
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 219 KNILMIGPTGVGKTEIARR-LAKLSN 243
+ +++ GP G GKT L +
Sbjct: 1305 RPLILCGPPGSGKTMTLTSTLRAFPD 1330
Score = 30.3 bits (68), Expect = 6.1
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 817 KNILMIGPTGVGKTEIARR-LAKLSN 841
+ +++ GP G GKT L +
Sbjct: 1305 RPLILCGPPGSGKTMTLTSTLRAFPD 1330
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 29.3 bits (66), Expect = 6.5
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 225 GPTGVGKTEIARRLAKLSNAPFIKIE 250
G G GK+ ++ LA +A + E
Sbjct: 29 GAPGSGKSTLSNPLAAALSAQGLPAE 54
Score = 29.3 bits (66), Expect = 6.5
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 823 GPTGVGKTEIARRLAKLSNAPFIKIE 848
G G GK+ ++ LA +A + E
Sbjct: 29 GAPGSGKSTLSNPLAAALSAQGLPAE 54
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 29.6 bits (66), Expect = 6.6
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 198 ALRNRWRRQQITGPLQQEITPKN---ILMIGPTGVGKTEIARRLAK 240
A+R ++ + + + + +IG GKT + ++L
Sbjct: 18 AVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIG 63
Score = 29.6 bits (66), Expect = 6.6
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 796 ALRNRWRRQQITGPLQQEITPKN---ILMIGPTGVGKTEIARRLAK 838
A+R ++ + + + + +IG GKT + ++L
Sbjct: 18 AVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIG 63
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 28.9 bits (65), Expect = 6.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 221 ILMIGPTGVGKTEIARRLAKLSNAPFIKIEAT 252
++++G TG GKT + ++L K + AT
Sbjct: 5 LMIVGNTGSGKTTLLQQLMKTKKSDLGMQSAT 36
Score = 28.9 bits (65), Expect = 6.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 819 ILMIGPTGVGKTEIARRLAKLSNAPFIKIEAT 850
++++G TG GKT + ++L K + AT
Sbjct: 5 LMIVGNTGSGKTTLLQQLMKTKKSDLGMQSAT 36
>1dct_A Protein (modification methylase HAEIII); enzyme, cytosine
methylase, transferase/DNA complex; HET: DNA C49 5CM;
2.80A {Haemophilus influenzae biotypeaegyptius} SCOP:
c.66.1.26
Length = 324
Score = 29.3 bits (66), Expect = 7.1
Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 4/127 (3%)
Query: 268 IRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQ 327
R ++I+ I +D I L +K N N+E S
Sbjct: 161 FRKELNINYLPPIPHLIKPTFKDVIWDLKDNPIPALDKNKTNGNKCIYPNHEYFIGSYST 220
Query: 328 IFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIK 387
IF R R + ++ + + +P M K + + R++
Sbjct: 221 IFMSRNRVRQWNEPAFTVQASGRQCQLHPQAPV----MLKVSKNLNKFVEGKEHLYRRLT 276
Query: 388 IREAIKL 394
+RE ++
Sbjct: 277 VRECARV 283
Score = 29.3 bits (66), Expect = 7.1
Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 4/127 (3%)
Query: 866 IRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQ 925
R ++I+ I +D I L +K N N+E S
Sbjct: 161 FRKELNINYLPPIPHLIKPTFKDVIWDLKDNPIPALDKNKTNGNKCIYPNHEYFIGSYST 220
Query: 926 IFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIK 985
IF R R + ++ + + +P M K + + R++
Sbjct: 221 IFMSRNRVRQWNEPAFTVQASGRQCQLHPQAPV----MLKVSKNLNKFVEGKEHLYRRLT 276
Query: 986 IREAIKL 992
+RE ++
Sbjct: 277 VRECARV 283
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 29.0 bits (65), Expect = 8.0
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 214 QEITPKNILMIGPTGVGKTEIARRLAK 240
K + + G G+GK+ + +A
Sbjct: 148 PSAEQKGLYLYGDMGIGKSYLLAAMAH 174
Score = 29.0 bits (65), Expect = 8.0
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 812 QEITPKNILMIGPTGVGKTEIARRLAK 838
K + + G G+GK+ + +A
Sbjct: 148 PSAEQKGLYLYGDMGIGKSYLLAAMAH 174
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 29.6 bits (65), Expect = 8.6
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 213 QQEITP-----KNILMIGPTGVGKTEIARRLAK 240
Q E+ KN ++ PTG GKT ++ + +
Sbjct: 18 QLELALPAMKGKNTIICAPTGCGKTFVSLLICE 50
Score = 29.6 bits (65), Expect = 8.6
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 811 QQEITP-----KNILMIGPTGVGKTEIARRLAK 838
Q E+ KN ++ PTG GKT ++ + +
Sbjct: 18 QLELALPAMKGKNTIICAPTGCGKTFVSLLICE 50
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 29.4 bits (66), Expect = 8.7
Identities = 8/34 (23%), Positives = 20/34 (58%)
Query: 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 253
++++IG + GKT + R +A L+ ++ + +
Sbjct: 1611 HMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHR 1644
Score = 29.4 bits (66), Expect = 8.7
Identities = 8/34 (23%), Positives = 20/34 (58%)
Query: 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 851
++++IG + GKT + R +A L+ ++ + +
Sbjct: 1611 HMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHR 1644
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 29.4 bits (65), Expect = 9.0
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 198 ALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 239
+ + R GP ++++G + GKT ++R L
Sbjct: 126 FMLEKIRMSNFEGP--------RVVIVGGSQTGKTSLSRTLC 159
Score = 29.4 bits (65), Expect = 9.0
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 796 ALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 837
+ + R GP ++++G + GKT ++R L
Sbjct: 126 FMLEKIRMSNFEGP--------RVVIVGGSQTGKTSLSRTLC 159
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 29.3 bits (66), Expect = 9.1
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 225 GPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEI 284
GP G GKT +LAK S+A + + G G ++ ++ + + +T + +
Sbjct: 234 GPAGSGKTVTQHQLAKWSDAQVV-----IYIGCGERGNEMTDVLEEFPKLKDPKTGKPLM 288
Query: 285 NKV 287
+
Sbjct: 289 ERT 291
Score = 29.3 bits (66), Expect = 9.1
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 823 GPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEI 882
GP G GKT +LAK S+A + + G G ++ ++ + + +T + +
Sbjct: 234 GPAGSGKTVTQHQLAKWSDAQVV-----IYIGCGERGNEMTDVLEEFPKLKDPKTGKPLM 288
Query: 883 NKV 885
+
Sbjct: 289 ERT 291
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL
nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo
sapiens} PDB: 1zxn_A*
Length = 400
Score = 29.2 bits (66), Expect = 9.5
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 305 PSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDT 350
P K F ++ + + +R + A K++++ LN
Sbjct: 193 PDLSK------FKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGN 232
Score = 29.2 bits (66), Expect = 9.5
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 903 PSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDT 948
P K F ++ + + +R + A K++++ LN
Sbjct: 193 PDLSK------FKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGN 232
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A
3j0j_A* 1um2_C
Length = 578
Score = 29.3 bits (66), Expect = 9.5
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 225 GPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEI 284
GP G GK+ + LAK SNA + + G G ++ ++ + +++ +T +
Sbjct: 228 GPFGSGKSVTQQSLAKWSNADVV-----VYVGSGERGNEMTDVLVEFPELTDPKTGGPLM 282
Query: 285 NKV 287
++
Sbjct: 283 HRT 285
Score = 29.3 bits (66), Expect = 9.5
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 823 GPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEI 882
GP G GK+ + LAK SNA + + G G ++ ++ + +++ +T +
Sbjct: 228 GPFGSGKSVTQQSLAKWSNADVV-----VYVGSGERGNEMTDVLVEFPELTDPKTGGPLM 282
Query: 883 NKV 885
++
Sbjct: 283 HRT 285
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.364
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 17,703,826
Number of extensions: 1178008
Number of successful extensions: 3788
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3647
Number of HSP's successfully gapped: 402
Length of query: 1165
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1061
Effective length of database: 3,798,009
Effective search space: 4029687549
Effective search space used: 4029687549
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (27.9 bits)