BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2393
(576 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 242/565 (42%), Positives = 342/565 (60%), Gaps = 27/565 (4%)
Query: 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI 70
++I VT ALPYANG +H+GH++E+IQAD+WVR+Q M + +V FICADDAHG I
Sbjct: 4 AKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRM-----RGHEVNFICADDAHGTPI 58
Query: 71 MIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXX 130
M+ A++ G+TP++ I +S + GF I +DN++ST S EN L + IY L
Sbjct: 59 MLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRL-KENG 117
Query: 131 XXXXXXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSIL 190
Q +DP K +FLPDR++KG CP C + DQYGD CE C + Y+PT+LI P S++
Sbjct: 118 FIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVV 177
Query: 191 SGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDIS 250
SG P+++ S+HFFF L + L+ W LQ ++ NK++EW E + WDIS
Sbjct: 178 SGATPVMRDSEHFFFDLPS--FSEMLQAWT-RSGALQEQVANKMQEWFE--SGLQQWDIS 232
Query: 251 RDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNT 310
RDAPYFG +IPN KYFYVWLDAPIGY+ S KN +K G + +FDE+ +T
Sbjct: 233 RDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRG------DSVSFDEYWKKDST 286
Query: 311 -EQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYY 369
E YHFIGKDI YFH LFWPA+L+ S + P+N+FVHG++T+NG KMSKS I +
Sbjct: 287 AELYHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTW 346
Query: 370 LKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFK 429
L + + LRYY +KL+++I+DID N + F+ VN+D++ K +N+ASR++ FI K F
Sbjct: 347 LN-HFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFD 405
Query: 430 GYLNMKWVKDN--DTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPW 487
G L + TF V+ + +E+R F K + ++ + N + D+ PW
Sbjct: 406 GVLASELADPQLYKTFTDAAEVIGEA----WESREFGKAVREIMALADLANRYVDEQAPW 461
Query: 488 KLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLT 547
+AK L I S + FR+L YLKP+LP L + E FLN + L W I PL
Sbjct: 462 VVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLN-TELTWDGIQQPLL 520
Query: 548 QNHKINKYRHLMTRVDKNIVDNLLK 572
HK+N ++ L R+D V+ L++
Sbjct: 521 -GHKVNPFKALYNRIDMRQVEALVE 544
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 242/565 (42%), Positives = 342/565 (60%), Gaps = 27/565 (4%)
Query: 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI 70
++I VT ALPYANG +H+GH++E+IQAD+WVR+Q M + +V FICADDAHG I
Sbjct: 5 AKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRM-----RGHEVNFICADDAHGTPI 59
Query: 71 MIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXX 130
M+ A++ G+TP++ I +S + GF I +DN++ST S EN L + IY L
Sbjct: 60 MLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRL-KENG 118
Query: 131 XXXXXXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSIL 190
Q +DP K +FLPDR++KG CP C + DQYGD CE C + Y+PT+LI P S++
Sbjct: 119 FIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVV 178
Query: 191 SGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDIS 250
SG P+++ S+HFFF L + L+ W LQ ++ NK++EW E + WDIS
Sbjct: 179 SGATPVMRDSEHFFFDLPSFS--EMLQAWT-RSGALQEQVANKMQEWFE--SGLQQWDIS 233
Query: 251 RDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNT 310
RDAPYFG +IPN KYFYVWLDAPIGY+ S KN +K G + +FDE+ +T
Sbjct: 234 RDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRG------DSVSFDEYWKKDST 287
Query: 311 -EQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYY 369
E YHFIGKDI YFH LFWPA+L+ S + P+N+FVHG++T+NG KMSKS I +
Sbjct: 288 AELYHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTW 347
Query: 370 LKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFK 429
L + + LRYY +KL+++I+DID N + F+ VN+D++ K +N+ASR++ FI K F
Sbjct: 348 LN-HFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFD 406
Query: 430 GYLNMKWVKDN--DTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPW 487
G L + TF V+ + +E+R F K + ++ + N + D+ PW
Sbjct: 407 GVLASELADPQLYKTFTDAAEVIGEA----WESREFGKAVREIMALADLANRYVDEQAPW 462
Query: 488 KLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLT 547
+AK L I S + FR+L YLKP+LP L + E FLN + L W I PL
Sbjct: 463 VVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLN-TELTWDGIQQPLL 521
Query: 548 QNHKINKYRHLMTRVDKNIVDNLLK 572
HK+N ++ L R+D V+ L++
Sbjct: 522 -GHKVNPFKALYNRIDMRQVEALVE 545
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 470 bits (1210), Expect = e-133, Method: Compositional matrix adjust.
Identities = 242/565 (42%), Positives = 342/565 (60%), Gaps = 27/565 (4%)
Query: 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI 70
++I VT ALPYANG +H+GH++E+IQAD+WVR+Q M + +V FICADDAHG I
Sbjct: 4 AKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRM-----RGHEVNFICADDAHGTPI 58
Query: 71 MIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXX 130
M+ A++ G+TP++ I +S + GF I +DN++ST S EN L + IY L
Sbjct: 59 MLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRL-KENG 117
Query: 131 XXXXXXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSIL 190
Q +DP K +FLPDR++KG CP C + DQYGD CE C + Y+PT+LI P S++
Sbjct: 118 FIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVV 177
Query: 191 SGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDIS 250
SG P+++ S+HFFF L + L+ W LQ ++ NK++EW E + WDIS
Sbjct: 178 SGATPVMRDSEHFFFDLPSFS--EMLQAWT-RSGALQEQVANKMQEWFE--SGLQQWDIS 232
Query: 251 RDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNT 310
RDAPYFG +IPN KYFYVWLDAPIGY+ S KN +K G + +FDE+ +T
Sbjct: 233 RDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRG------DSVSFDEYWKKDST 286
Query: 311 -EQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYY 369
E YHFIGKDI YFH LFWPA+L+ S + P+N+FVHG++T+NG KMSKS I +
Sbjct: 287 AELYHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTW 346
Query: 370 LKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFK 429
L + + LRYY +KL+++I+DID N + F+ VN+D++ K +N+ASR++ FI K F
Sbjct: 347 LN-HFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFD 405
Query: 430 GYLNMKWVKDN--DTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPW 487
G L + TF V+ + +E+R F K + ++ + N + D+ PW
Sbjct: 406 GVLASELADPQLYKTFTDAAEVIGEA----WESREFGKAVREIMALADLANRYVDEQAPW 461
Query: 488 KLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLT 547
+AK L I S + FR+L YLKP+LP L + E FLN + L W I PL
Sbjct: 462 VVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLN-TELTWDGIQQPLL 520
Query: 548 QNHKINKYRHLMTRVDKNIVDNLLK 572
HK+N ++ L R+D V+ L++
Sbjct: 521 -GHKVNPFKALYNRIDMRQVEALVE 544
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 470 bits (1209), Expect = e-132, Method: Compositional matrix adjust.
Identities = 242/565 (42%), Positives = 342/565 (60%), Gaps = 27/565 (4%)
Query: 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI 70
++I VT ALPYANG +H+GH++E+IQAD+WVR+Q M + +V FICADDAHG I
Sbjct: 4 AKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRM-----RGHEVNFICADDAHGTPI 58
Query: 71 MIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXX 130
M+ A++ G+TP++ I +S + GF I +DN++ST S EN L + IY L
Sbjct: 59 MLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRL-KENG 117
Query: 131 XXXXXXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSIL 190
Q +DP K +FLPDR++KG CP C + DQYGD CE C + Y+PT+LI P S++
Sbjct: 118 FIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVV 177
Query: 191 SGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDIS 250
SG P+++ S+HFFF L + L+ W LQ ++ NK++EW E + WDIS
Sbjct: 178 SGATPVMRDSEHFFFDLPS--FSEMLQAWT-RSGALQEQVANKMQEWFE--SGLQQWDIS 232
Query: 251 RDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNT 310
RDAPYFG +IPN KYFYVWLDAPIGY+ S KN +K G + +FDE+ +T
Sbjct: 233 RDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRG------DSVSFDEYWKKDST 286
Query: 311 -EQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYY 369
E YHFIGKDI YFH LFWPA+L+ S + P+N+FVHG++T+NG KMSKS I +
Sbjct: 287 AELYHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTW 346
Query: 370 LKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFK 429
L + + LRYY +KL+++I+DID N + F+ VN+D++ K +N+ASR++ FI K F
Sbjct: 347 LN-HFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFD 405
Query: 430 GYLNMKWVKDN--DTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPW 487
G L + TF V+ + +E+R F K + ++ + N + D+ PW
Sbjct: 406 GVLASELADPALYKTFTDAAEVIGEA----WESREFGKAVREIMALADLANRYVDEQAPW 461
Query: 488 KLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLT 547
+AK L I S + FR+L YLKP+LP L + E FLN + L W I PL
Sbjct: 462 VVAKQAGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLN-TELTWDGIQQPLL 520
Query: 548 QNHKINKYRHLMTRVDKNIVDNLLK 572
HK+N ++ L R+D V+ L++
Sbjct: 521 -GHKVNPFKALYNRIDMRQVEALVE 544
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 461 bits (1187), Expect = e-130, Method: Compositional matrix adjust.
Identities = 239/565 (42%), Positives = 339/565 (60%), Gaps = 27/565 (4%)
Query: 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI 70
++I VT A PYANG +H+GH++E+IQAD+WVR+Q M + +V FICADDAHG I
Sbjct: 17 AKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRM-----RGHEVNFICADDAHGTPI 71
Query: 71 MIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXX 130
M+ A++ G+TP++ I +S + GF I +DN++ST S EN L + IY L
Sbjct: 72 MLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRL-KENG 130
Query: 131 XXXXXXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSIL 190
Q +DP K +FLPDR++KG CP C + DQYGD CE C + Y+PT+LI P S++
Sbjct: 131 FIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVV 190
Query: 191 SGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDIS 250
SG P+++ S+HFFF L + L+ W LQ ++ NK++EW E + WDIS
Sbjct: 191 SGATPVMRDSEHFFFDLPS--FSEMLQAWT-RSGALQEQVANKMQEWFE--SGLQQWDIS 245
Query: 251 RDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNT 310
RDAPYFG +IPN KYFYVWLDAPIG + S KN +K G + +FDE+ +T
Sbjct: 246 RDAPYFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRG------DSVSFDEYWKKDST 299
Query: 311 -EQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYY 369
E YHFIGKDI YF LFWPA+L+ S + P+N+FVHG++T+NG KMSKS I +
Sbjct: 300 AELYHFIGKDIVYFLSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTW 359
Query: 370 LKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFK 429
L + + LRYY +KL+++I+DID N + F+ VN+D++ K +N+ASR++ FI K F
Sbjct: 360 LN-HFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFD 418
Query: 430 GYLNMKWVKDN--DTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPW 487
G L + TF V+ + +E+R F K + ++ + N + D+ PW
Sbjct: 419 GVLASELADPQLYKTFTDAAEVIGEA----WESREFGKAVREIMALADLANRYVDEQAPW 474
Query: 488 KLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLT 547
+AK L I S + FR+L YLKP+LP L + E FLN + L W I PL
Sbjct: 475 VVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLN-TELTWDGIQQPLL 533
Query: 548 QNHKINKYRHLMTRVDKNIVDNLLK 572
HK+N ++ L R+D V+ L++
Sbjct: 534 -GHKVNPFKALYNRIDMRQVEALVE 557
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 238 bits (606), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 175/569 (30%), Positives = 272/569 (47%), Gaps = 42/569 (7%)
Query: 13 RIFVTTALPYANGELHIGHIM-EYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
R VT+ALPYANG +H GH+ Y+ ADI+VR+ + K V FIC D HG I
Sbjct: 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRL-----KGEDVVFICGTDEHGTPIS 57
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXXX 131
A K G +P+E ++ K I FD + T+ + L Q+ + Y
Sbjct: 58 FRALKEGRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHL 117
Query: 132 XXXXXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
+ + K +FLPDR++ G CP C A+DQ GD CE C TP LINP +
Sbjct: 118 VKKVTKQAYCEHDK-MFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRCAIC 176
Query: 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISR 251
G + S H++ K+ D + L++W I + +P + N + W+E+ + I+R
Sbjct: 177 GRPISFRDSAHYYIKMQD--FAERLKRW-IEKQPWKPNVKNMVLSWIEEG--LEERAITR 231
Query: 252 DAPYFGIKIPNTLE----KYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISS 307
D + GI +P E K YVW +APIGY++ F++ G K NE + + I
Sbjct: 232 DLNW-GIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIG---KPNEWKKYWLNIDG 287
Query: 308 PNTEQYHFIGKDIFYFHILFWPAILKFSGR----------KLPNNIFVHGFMTINGKKMS 357
T HFIGKD FH +FWPA L G+ LP +I + ++T+ GKK S
Sbjct: 288 -QTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFS 346
Query: 358 KSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIA 417
S I +L + ++LRYY+ + + + D DF+ F +N +L+ N
Sbjct: 347 TSRNWAIWVHEFLDV-FPADYLRYYLTT-IMPETRDSDFSFSDFKVRINEELVNNLGNFV 404
Query: 418 SRSSSFIEKYFKGYLNMKWVKD--NDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTN 475
R+ +F+ +YF G + + D + L ++ + + N F L V+ +
Sbjct: 405 HRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLAS 464
Query: 476 FINIFFDQNKPWKLAKNN-IYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534
F N +FD +PWK AK + + IS ++++A IL L+P LP+ ++ + LN+
Sbjct: 465 FGNRYFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGIL---LEPFLPDASEKIWHLLNL 521
Query: 535 SPL-QWINIFTPLTQNHKINKYRHLMTRV 562
+ +W F L HK+ K L +V
Sbjct: 522 DEVKRW--EFRELPAGHKVRKPEILFKKV 548
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 137/552 (24%), Positives = 245/552 (44%), Gaps = 87/552 (15%)
Query: 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI 70
+++ +VTT + Y N H+GH I AD R+ + + V+F+ D HG I
Sbjct: 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRL-----RDYDVFFLTGTDEHGLKI 58
Query: 71 MIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXX 130
AE+ G++PKE ++ + KK + I++ + T ++ VQK+++ Y
Sbjct: 59 QKKAEELGISPKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRG- 117
Query: 131 XXXXXXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSI- 189
+I+L GE G +C C + +L ++
Sbjct: 118 ---------------DIYL------GEYE--------GWYCVGCEEFKSEAELAEDHTCP 148
Query: 190 LSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQP-----EIVNKIKEWLEKDNKF 244
+ K +FF+LS K L + + + +QP EI++ +K+ L+
Sbjct: 149 IHQKKCEYIKEPSYFFRLS-KYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLK----- 202
Query: 245 NDWDISRDAPY----FGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRN 300
D+S P +GI +P E YVW DA Y+++L++ E P
Sbjct: 203 ---DLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISALEDKVEIYWPA-------- 251
Query: 301 FDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSN 360
H +GKDI FH ++WPA L G +LP +F HG+ T+ GKKMSK+
Sbjct: 252 -----------DLHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTVEGKKMSKTL 300
Query: 361 KIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRS 420
+ P Y + + +RY++ ++ +D DF+ ++ ++ +N +L + N+ SR
Sbjct: 301 GNVVDP-YEVVQEYGLDEVRYFLLREVPFG-QDGDFSKKAILNRINGELANEIGNLYSRV 358
Query: 421 SSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSI---QKYYENRNFNKVLYIVIEQTNFI 477
+ K+ G + +D + ++ SI + Y E NF K + +++ T+++
Sbjct: 359 VNMAHKFLGG--EVSGARDEEY----AKIAQESIKNYENYMEKVNFYKAIEEILKFTSYL 412
Query: 478 NIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPL 537
N + D+ +PW L K E+L K+ L++ +LT L PI PN K E +
Sbjct: 413 NKYVDEKQPWALNKERK-KEELQKVLYALVDGLFVLTHLLYPITPNKMK--EALQMLGEK 469
Query: 538 QWINIFTPLTQN 549
+++ P ++N
Sbjct: 470 EFLKELKPYSKN 481
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 129/527 (24%), Positives = 221/527 (41%), Gaps = 66/527 (12%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
++TTA+ Y NG+ HIGH E I D RFQ + NG VYF+ D HG ++ +A
Sbjct: 28 YITTAIAYPNGKPHIGHAYELIATDAMARFQRL---NGMD--VYFLTGTDEHGIKMLQSA 82
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXXXXXX 134
K G+TP++ + +S ++ + D++ T + Q I+ +
Sbjct: 83 RKEGITPRDLADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAIWQAMVANG----- 137
Query: 135 XXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTK 194
D Y G + +D+ + E + + P GT
Sbjct: 138 ----------------DIYKGGYAGWYSVRDE-AYYGEEETEVRADGVRYGP----QGTP 176
Query: 195 PIIKSSKHFFFKLS--DKRCIDFLR--KWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDIS 250
+ +FF+LS + +D I + EIV+ +K L+ D IS
Sbjct: 177 VEWVEEESYFFRLSAYQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLK------DLSIS 230
Query: 251 RDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNT 310
R +GI +P + YVW+DA Y+ +L G P +
Sbjct: 231 RTTFDWGIPVPGDEKHVMYVWVDALTNYITAL------GYPDTTDERWAYW--------P 276
Query: 311 EQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYL 370
H IGKDI FH ++WPA L + LP +F HGF+ G+KMSKS I P +
Sbjct: 277 ANAHIIGKDISRFHAVYWPAFLMSAQLPLPKRVFAHGFLFNRGEKMSKSVGNVIDPFELV 336
Query: 371 -KIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFK 429
+ G++ LRY++ ++ +D ++ ++ ++ N+DL N+A RS S I K +
Sbjct: 337 ERYGLD--QLRYFLMREVPFG-QDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCE 393
Query: 430 GYLNM--KWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPW 487
G + + + + L + + +K +++ + L + N +F +PW
Sbjct: 394 GKVPQPGAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVVAEANRYFAGQEPW 453
Query: 488 KLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534
L K + ++ + E R + I ++P +P +S E L+I
Sbjct: 454 ALRKTD--PARMGTVLYVTAEVLRRVGIMVQPFIP---QSAEKLLDI 495
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 134 bits (338), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 125/514 (24%), Positives = 215/514 (41%), Gaps = 53/514 (10%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
++TTA+ Y NG HIGH EYI D RF+ + V ++ D HG + A
Sbjct: 15 YITTAIAYPNGVPHIGHAYEYIATDAIARFKRLD-----GYDVRYLTGTDVHGQKMAETA 69
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXXXXXX 134
K G+ E S ++ + I FD + T ++ + + I+ +
Sbjct: 70 AKEGIPAAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKAIWKRMADA------ 123
Query: 135 XXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTK 194
+I+L D Y KG I + + F E ++ I + +G
Sbjct: 124 ----------GDIYL-DAY-KGWYSIRDERF----FTENETTEQPDGTRI---ATETGAP 164
Query: 195 PIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIV-NKIKEWLEKDNKFNDWDISRDA 253
+ +FF+LS L + H + + P+ N+I ++ D ISR
Sbjct: 165 VTWTEEQTYFFRLS-AYTDRLLALYEEHPEFIGPDARRNEIVSFVS--GGLKDLSISRTT 221
Query: 254 PYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQY 313
+G+ +P+ + YVW+DA YL + G P + R +
Sbjct: 222 FDWGVPVPDHPDHVMYVWVDALTNYLTGV------GFPDTESESFRRY-------WPADL 268
Query: 314 HFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIG 373
H IGKDI FH ++WPA L +G LP IF HG++ G+KMSKS + P+ +
Sbjct: 269 HMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVDT- 327
Query: 374 MNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYL- 432
+ +RY++ ++ +D +N + I VN+DL + N+A RS S + K +
Sbjct: 328 FGLDQVRYFLLREVPFG-QDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGAAVP 386
Query: 433 NMKWVKDNDTFLSKLRVVSSS-IQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWKLAK 491
+ D DT L ++++++ + L + N +F +PW L K
Sbjct: 387 DPGEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLGAANRYFSAQEPWVLRK 446
Query: 492 NNIY--HEKLHKISSRLLEAFRILTIYLKPILPN 523
++ ++ + LE RI ++ L+P++P
Sbjct: 447 SDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPE 480
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 123/532 (23%), Positives = 223/532 (41%), Gaps = 80/532 (15%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
+VTT + Y N E H+GH + AD R+ + + +F+ D HG + AA
Sbjct: 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLD-----GYRTFFLTGTDEHGETVYRAA 60
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXXXXXX 134
+ AG PK F++ +S K+ D I +D++ T + +VQ + +Y
Sbjct: 61 QAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVY-------- 112
Query: 135 XXXXQFFDPIKNIFLPDRYIKGECPICNAKDQY-----GDFCECCSSIYTPTKLINPYSI 189
A D Y G +C C YT +L+
Sbjct: 113 ---------------------------EAGDIYYGEYEGLYCVSCERFYTEKELVEGLCP 145
Query: 190 LSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRL-QPE-IVNKIKEWLEKDNKFNDW 247
+ G + ++FF++ R +L+++ + L +PE N++ L + D
Sbjct: 146 IHGRPVERRKEGNYFFRMEKYR--PWLQEYIQENPDLIRPEGYRNEVLAMLAE--PIGDL 201
Query: 248 DISRD---APYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEF 304
ISR P+ GI +P YVW DA + Y+++L Y E + F
Sbjct: 202 SISRPKSRVPW-GIPLPWDENHVTYVWFDALLNYVSALD-----------YPEGEAYRTF 249
Query: 305 ISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGF-MTINGKKMSKSNKIG 363
+H IGKDI H +FWP +LK +G + ++ V GF + +G+KMSK+
Sbjct: 250 WPH----AWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNV 305
Query: 364 ISPLYYL-KIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSS 422
+ P L K G + LRYY+ ++ +D + ++ + +DL N+ R+ +
Sbjct: 306 VDPFALLEKYGRDA--LRYYLLREIPYG-QDTPVSEEALRTRYEADLADDLGNLVQRTRA 362
Query: 423 FIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFD 482
+ ++ +G + + L++ ++ ++ F+ L + +N + +
Sbjct: 363 MLFRFAEGRIPEPVAGEE---LAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYIN 419
Query: 483 QNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534
+ KPW+L K E+ + R++E RI +I L P +P+ + L +
Sbjct: 420 EKKPWELFKKE--PEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGL 469
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 131 bits (330), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 122/532 (22%), Positives = 223/532 (41%), Gaps = 80/532 (15%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
+VTT + Y N E H+GH + AD R+ + + +F+ D HG + AA
Sbjct: 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLD-----GYRTFFLTGTDEHGETVYRAA 60
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXXXXXX 134
+ AG PK F++ +S K+ D I +D++ T + +VQ + +Y
Sbjct: 61 QAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVY-------- 112
Query: 135 XXXXQFFDPIKNIFLPDRYIKGECPICNAKDQY-----GDFCECCSSIYTPTKLINPYSI 189
A D Y G +C C YT +L+
Sbjct: 113 ---------------------------EAGDIYYGEYEGLYCVSCERFYTEKELVEGLCP 145
Query: 190 LSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRL-QPE-IVNKIKEWLEKDNKFNDW 247
+ G + ++FF++ R +L+++ + L +PE N++ L + D
Sbjct: 146 IHGRPVERRKEGNYFFRMEKYR--PWLQEYIQENPDLIRPEGYRNEVLAMLAE--PIGDL 201
Query: 248 DISRD---APYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEF 304
ISR P+ GI +P +VW DA + Y+++L Y E + F
Sbjct: 202 SISRPKSRVPW-GIPLPWDENHVTFVWFDALLNYVSALD-----------YPEGEAYRTF 249
Query: 305 ISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGF-MTINGKKMSKSNKIG 363
+H IGKDI H +FWP +LK +G + ++ V GF + +G+KMSK+
Sbjct: 250 WPH----AWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNV 305
Query: 364 ISPLYYL-KIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSS 422
+ P L K G + LRYY+ ++ +D + ++ + +DL N+ R+ +
Sbjct: 306 VDPFALLEKYGRDA--LRYYLLREIPYG-QDTPVSEEALRTRYEADLADDLGNLVQRTRA 362
Query: 423 FIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFD 482
+ ++ +G + + L++ ++ ++ F+ L + +N + +
Sbjct: 363 MLFRFAEGRIPEPVAGEE---LAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYIN 419
Query: 483 QNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534
+ KPW+L K E+ + R++E RI +I L P +P+ + L +
Sbjct: 420 EKKPWELFKKE--PEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGL 469
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 126/532 (23%), Positives = 231/532 (43%), Gaps = 64/532 (12%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
FVT+ + Y N HIGH+ + D+ R+ + K +V+ + D HG + AA
Sbjct: 12 FVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRV-----KGERVFALTGTDEHGQKVAEAA 66
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXXXXXX 134
++ ++P +F ++ KK + D + T + ++ +V++++ L
Sbjct: 67 KQKQVSPYDFTTAVAGEFKKXFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLG 126
Query: 135 XXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTK 194
+ ++ P I + D+ G+ C+ S+ SG
Sbjct: 127 RYEGWYSISDESFLTPQN-------ITDGVDKDGNPCKV--------------SLESGHV 165
Query: 195 PIIKSSKHFFFKLSDKRCIDFLRKW------AIHDKRLQPEIVNKIKEWLEKDNKFNDWD 248
S +++ F+LS R + L +W I + + E++ +++ L D
Sbjct: 166 VTWVSEENYMFRLSAFR--ERLLEWYHANPGCIVPEFRRREVIRAVEKGLP------DLS 217
Query: 249 ISRDAPYF---GIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFI 305
+SR I +P + YVWLDA YL + ++ G K+ + + +F+E
Sbjct: 218 VSRARATLHNWAIPVPGNPDHXVYVWLDALTNYLTGSRLRVDESG--KEVSLVDDFNELE 275
Query: 306 SSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGIS 365
P H IGKDI FH ++WPA L +G LP I HG+ T + KK+SKS
Sbjct: 276 RFP--ADVHVIGKDILKFHAIYWPAFLLSAGLPLPKKIVAHGWWTKDRKKISKSLGNVFD 333
Query: 366 PLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIE 425
P+ + + L+Y++ + + +D D++ ++ I+ +N +L N+ R +S
Sbjct: 334 PVEKAE-EFGYDALKYFLLRE-SGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTS--- 388
Query: 426 KYFKGYLNMKW------VKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINI 479
K +N +W +++++ + ++ + + YY + K + V + IN
Sbjct: 389 --AKINVNGEWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINA 446
Query: 480 FFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETF 531
+ PWKL K + E+L + LE R+ T+ L PILP KSV F
Sbjct: 447 YVTDMAPWKLVKTD--PERLRTVLYITLEGVRVTTLLLSPILPR--KSVVIF 494
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 126/532 (23%), Positives = 231/532 (43%), Gaps = 64/532 (12%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
FVT+ + Y N HIGH+ + D+ R+ + K +V+ + D HG + AA
Sbjct: 12 FVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRV-----KGERVFALTGTDEHGQKVAEAA 66
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXXXXXX 134
++ ++P +F ++ KK + D + T + ++ +V++++ L
Sbjct: 67 KQKQVSPYDFTTAVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLG 126
Query: 135 XXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTK 194
+ ++ P I + D+ G+ C+ S+ SG
Sbjct: 127 RYEGWYSISDESFLTPQN-------ITDGVDKDGNPCKV--------------SLESGHV 165
Query: 195 PIIKSSKHFFFKLSDKRCIDFLRKW------AIHDKRLQPEIVNKIKEWLEKDNKFNDWD 248
S +++ F+LS R + L +W I + + E++ +++ L D
Sbjct: 166 VTWVSEENYMFRLSAFR--ERLLEWYHANPGCIVPEFRRREVIRAVEKGLP------DLS 217
Query: 249 ISRDAPYF---GIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFI 305
+SR I +P + YVWLDA YL + ++ G K+ + + +F+E
Sbjct: 218 VSRARATLHNWAIPVPGNPDHXVYVWLDALTNYLTGSRLRVDESG--KEVSLVDDFNELE 275
Query: 306 SSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGIS 365
P H IGKDI FH ++WPA L +G LP I HG+ T + KK+SKS
Sbjct: 276 RFP--ADVHVIGKDILKFHAIYWPAFLLSAGLPLPKKIVAHGWWTKDRKKISKSLGNVFD 333
Query: 366 PLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIE 425
P+ + + L+Y++ + + +D D++ ++ I+ +N +L N+ R +S
Sbjct: 334 PVEKAE-EFGYDALKYFLLRE-SGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTS--- 388
Query: 426 KYFKGYLNMKW------VKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINI 479
K +N +W +++++ + ++ + + YY + K + V + IN
Sbjct: 389 --AKINVNGEWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINA 446
Query: 480 FFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETF 531
+ PWKL K + E+L + LE R+ T+ L PILP KSV F
Sbjct: 447 YVTDMAPWKLVKTD--PERLRTVLYITLEGVRVTTLLLSPILPR--KSVVIF 494
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 126/532 (23%), Positives = 231/532 (43%), Gaps = 64/532 (12%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
FVT+ + Y N HIGH+ + D+ R+ + K +V+ + D HG + AA
Sbjct: 12 FVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRV-----KGERVFALTGTDEHGQKVAEAA 66
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXXXXXX 134
++ ++P +F ++ KK + D + T + ++ +V++++ L
Sbjct: 67 KQKQVSPYDFTTAVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLG 126
Query: 135 XXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTK 194
+ ++ P I + D+ G+ C+ S+ SG
Sbjct: 127 RYEGWYSISDESFLTPQN-------ITDGVDKDGNPCKV--------------SLESGHV 165
Query: 195 PIIKSSKHFFFKLSDKRCIDFLRKW------AIHDKRLQPEIVNKIKEWLEKDNKFNDWD 248
S +++ F+LS R + L +W I + + E++ +++ L D
Sbjct: 166 VTWVSEENYMFRLSAFR--ERLLEWYHANPGCIVPEFRRREVIRAVEKGLP------DLS 217
Query: 249 ISRDAPYF---GIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFI 305
+SR I +P + YVWLDA YL + ++ G K+ + + +F+E
Sbjct: 218 VSRARATLHNWAIPVPGNPDHCVYVWLDALTNYLTGSRLRVDESG--KEVSLVDDFNELE 275
Query: 306 SSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGIS 365
P H IGKDI FH ++WPA L +G LP I HG+ T + KK+SKS
Sbjct: 276 RFP--ADVHVIGKDILKFHAIYWPAFLLSAGLPLPKKIVAHGWWTKDRKKISKSLGNVFD 333
Query: 366 PLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIE 425
P+ + + L+Y++ + + +D D++ ++ I+ +N +L N+ R +S
Sbjct: 334 PVEKAE-EFGYDALKYFLLRE-SGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTS--- 388
Query: 426 KYFKGYLNMKW------VKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINI 479
K +N +W +++++ + ++ + + YY + K + V + IN
Sbjct: 389 --AKINVNGEWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINA 446
Query: 480 FFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETF 531
+ PWKL K + E+L + LE R+ T+ L PILP KSV F
Sbjct: 447 YVTDMAPWKLVKTD--PERLRTVLYITLEGVRVTTLLLSPILPR--KSVVIF 494
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 127/542 (23%), Positives = 228/542 (42%), Gaps = 59/542 (10%)
Query: 6 SEFKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDA 65
K + F TT + Y N HIGH+ + D+ R+ + K +V+ + D
Sbjct: 20 GSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRV-----KGEEVFVMTGTDE 74
Query: 66 HGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTL 125
HG + AA K G++P +F ++SS K+ + + T + + LVQ I+ L
Sbjct: 75 HGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKL 134
Query: 126 YXXXXXXXXXXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLIN 185
++ FL + + + D+ G C+
Sbjct: 135 -AAKGDIYLGKYEGWYSVSDESFLTAQNV------ADGVDRDGKPCKV------------ 175
Query: 186 PYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNK-IKEWLEKDNKF 244
S+ SG +++ F+LS R L+ + H + PE + + + +EK
Sbjct: 176 --SLESGHVVTWVEEENYMFRLSAFR-ERLLKYFHDHPNCIVPEFRRREVIKTVEKG--L 230
Query: 245 NDWDISRDAPY---FGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNF 301
D ISR + I +P YVWLDA L N++ + +
Sbjct: 231 FDLSISRKRESVMNWSIPVPGDERHCIYVWLDA-------LFNYYTGALTRVATDGTETL 283
Query: 302 DEFISSPN--TEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKS 359
DE + N H +GKDI FH ++WPA L + LP + HG+ T + KK+SKS
Sbjct: 284 DEDHHALNRWPADVHVVGKDILKFHAIYWPAFLMSAELPLPERLVSHGWWTKDHKKISKS 343
Query: 360 NKIGISPLYYLK-IGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIAS 418
P+ K G++ L+Y++ + N + +D D++ ++ ++ +N +L N+ S
Sbjct: 344 LGNAFDPVEKAKEFGIDA--LKYFLMRESNFQ-DDGDYSDKNMVARLNGELADTLGNLVS 400
Query: 419 RSSSFIEKYFKGYLNMKW------VKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIE 472
R + K +N W + + T ++ L ++ ++ YY + L + +
Sbjct: 401 RCVA-----PKINVNGMWPEPAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFD 455
Query: 473 QTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFL 532
+N + +N PWKL K + +L + +E RI T++L+P++P AK + L
Sbjct: 456 VLRSLNAYVTENAPWKLVKMDT--ARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDAL 513
Query: 533 NI 534
+
Sbjct: 514 GV 515
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 121/531 (22%), Positives = 221/531 (41%), Gaps = 78/531 (14%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
+VTT + Y N E H+GH + AD R+ + + +F+ D HG + AA
Sbjct: 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLD-----GYRTFFLTGTDEHGETVYRAA 60
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXXXXXX 134
+ AG PK F++ +S K+ D I +D++ T + +VQ + +Y
Sbjct: 61 QAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVY-------- 112
Query: 135 XXXXQFFDPIKNIFLPDRYIKGECPICNAKDQY-----GDFCECCSSIYTPTKLINPYSI 189
A D Y G +C C YT +L+
Sbjct: 113 ---------------------------EAGDIYYGEYEGLYCVSCERFYTEKELVEGLCP 145
Query: 190 LSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRL-QPE-IVNKIKEWLEKDNKFNDW 247
+ G + ++FF++ R +L+++ + L +PE N++ L + D
Sbjct: 146 IHGRPVERRKEGNYFFRMEKYR--PWLQEYIQENPDLIRPEGYRNEVLAMLAE--PIGDL 201
Query: 248 DISRDAPY--FGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFI 305
ISR +GI +P VW DA + Y+++L Y E + F
Sbjct: 202 SISRPKSRVPWGIPLPWDENHVTAVWFDALLNYVSALD-----------YPEGEAYRTFW 250
Query: 306 SSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGF-MTINGKKMSKSNKIGI 364
+H IGKDI H +FWP +LK +G + ++ V GF + +G+KMSK+ +
Sbjct: 251 PH----AWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVV 306
Query: 365 SPLYYL-KIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSF 423
P L K G + LRYY+ ++ +D + ++ + +DL N+ R+ +
Sbjct: 307 DPFALLEKYGRDA--LRYYLLREIPYG-QDTPVSEEALRTRYEADLADDLGNLVQRTRAM 363
Query: 424 IEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQ 483
+ ++ +G + + L++ ++ ++ F+ L + +N + ++
Sbjct: 364 LFRFAEGRIPEPVAGEE---LAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINE 420
Query: 484 NKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534
KPW+L K E+ + R++E RI +I L P +P+ + L +
Sbjct: 421 KKPWELFKKE--PEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGL 469
>pdb|1MEA|A Chain A, Methionyl-Trna Synthetase Zinc Binding Domain. 3d
Structure And Homology With Rubredoxin And Gag
Retroviral Proteins
pdb|1MED|A Chain A, Methionyl-Trna Synthetase Zinc Binding Domain. 3d
Structure And Homology With Rubredoxin And Gag
Retroviral Proteins
Length = 28
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 151 DRYIKGECPICNAKDQYGDFCECCSS 176
DR++KG CP C + DQYGD CE C +
Sbjct: 3 DRFVKGTCPKCKSPDQYGDNCEVCGA 28
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 7/146 (4%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
+V PY +G+LH+GH+ Y D+ RF+ MQ +V DA G AA
Sbjct: 36 YVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQ-----GYEVLHPMGWDAFGLPAENAA 90
Query: 75 EKAGMTPKEFI-NNISSNRKKY-LDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXXXX 132
K G+ PK++ NI ++ L G +D +T E Q I+ ++
Sbjct: 91 LKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAY 150
Query: 133 XXXXXXQFFDPIKNIFLPDRYIKGEC 158
+ + + ++ ++G C
Sbjct: 151 RAKGLVNWCPKCQTVLANEQVVEGRC 176
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 7/146 (4%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
+V PY +G+LH+GH+ Y D+ RF+ MQ +V DA G AA
Sbjct: 36 YVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQ-----GYEVLHPMGWDAFGLPAENAA 90
Query: 75 EKAGMTPKEFI-NNISSNRKKY-LDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXXXX 132
K G+ PK++ NI ++ L G +D +T E Q I+ ++
Sbjct: 91 LKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAY 150
Query: 133 XXXXXXQFFDPIKNIFLPDRYIKGEC 158
+ + + ++ ++G C
Sbjct: 151 RAKGLVNWCPKCQTVLANEQVVEGRC 176
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
++ ++T A PY +G LH+GH Y D+ RF+ MQ N V F A G+ I+
Sbjct: 34 KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYN-----VLFPMAWHITGSPIV 88
Query: 72 IAAEK 76
AE+
Sbjct: 89 GIAER 93
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 317 GKDIFYFHILFW--PAILKFSGRKLPNNIFVHGFMTINGKKMSKS 359
GKD+ H+ F+ + F P I V+GF T+ G+KMSKS
Sbjct: 610 GKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKS 654
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
++ ++T A PY +G LH+GH Y D+ RF+ MQ N V F A G+ I+
Sbjct: 34 KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYN-----VLFPMAWHITGSPIV 88
Query: 72 IAAEK 76
AE+
Sbjct: 89 GIAER 93
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 317 GKDIFYFHILFW--PAILKFSGRKLPNNIFVHGFMTINGKKMSKS 359
GKD+ H+ F+ + F P I V+GF T+ G+KMSKS
Sbjct: 610 GKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKS 654
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 9/162 (5%)
Query: 6 SEFKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDA 65
+E + + + + LPY +G LH+GH+ Y D+ R+Q M N V DA
Sbjct: 47 TEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKN-----VLQPIGWDA 101
Query: 66 HGAAIMIAAEKAGMTPKEFI-NNIS--SNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIY 122
G AA K P + +NI+ N+ K L GF + +T + E QK +
Sbjct: 102 FGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKML-GFGYDWSRELATCTPEYYRWEQKFF 160
Query: 123 DTLYXXXXXXXXXXXXQFFDPIKNIFLPDRYIKGECPICNAK 164
LY + + + ++ I G C C+ K
Sbjct: 161 TELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTK 202
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMT 80
PYANG LH+GH + I D VR++ MQ ++ D HG I A K G+
Sbjct: 57 PYANGNLHMGHALNKILKDFIVRYKTMQ-----GFYAPYVPGWDTHGLPIEQALTKKGVD 111
Query: 81 PKEF 84
K+
Sbjct: 112 RKKM 115
>pdb|1NT2|A Chain A, Crystal Structure Of FibrillarinNOP5P COMPLEX
Length = 210
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 458 YENRNFNKVLYIVIEQTNFINIFFDQNKPWK 488
Y + F K+L +V E+ N I + FD +KPWK
Sbjct: 89 YSAKPFEKLLELVRERNNIIPLLFDASKPWK 119
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 6/93 (6%)
Query: 13 RIFVTTALPYANGE-LHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
+ + PY +G LH+GH Y DI R++ + K V DA G
Sbjct: 37 KFYALDMFPYPSGSGLHVGHPEGYTATDIISRYKRL-----KGFDVLHPIGWDAFGLPAE 91
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFD 104
A +G P+ F N ++ L FD
Sbjct: 92 QYALSSGKHPQPFTLKNIENFRRQLKSLGFSFD 124
>pdb|1NE7|A Chain A, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|B Chain B, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|C Chain C, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|D Chain D, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|E Chain E, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|F Chain F, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
Length = 289
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 265 EKYFYVWL---DAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSP--NTEQYHFIGKD 319
EKYF + L P+G L +++ G KY + N DE++ P + E YH +
Sbjct: 32 EKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWN 91
Query: 320 IFYFHILFWP 329
F+ HI P
Sbjct: 92 NFFKHIDIHP 101
>pdb|3OYO|A Chain A, Crystal Structure Of Hemopexin Fold Protein Cp4 From Cow
Pea
pdb|3OYO|B Chain B, Crystal Structure Of Hemopexin Fold Protein Cp4 From Cow
Pea
Length = 225
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 9/48 (18%)
Query: 413 YINIASRSSSFIEKYFKGYLNMKWVK-------DNDTFLSKLRVVSSS 453
YIN A RSSS E YF + K+V+ +DT L+ LR++SS
Sbjct: 3 YINAAFRSSSEYEVYF--FAKNKYVRLHYTPGASSDTILTNLRLISSG 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,901,524
Number of Sequences: 62578
Number of extensions: 785782
Number of successful extensions: 1830
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1698
Number of HSP's gapped (non-prelim): 59
length of query: 576
length of database: 14,973,337
effective HSP length: 104
effective length of query: 472
effective length of database: 8,465,225
effective search space: 3995586200
effective search space used: 3995586200
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)