Query psy2393
Match_columns 576
No_of_seqs 202 out of 1715
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 23:53:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0143 MetG Methionyl-tRNA sy 100.0 5E-119 1E-123 948.1 53.2 544 10-575 3-557 (558)
2 PLN02610 probable methionyl-tR 100.0 1E-108 2E-113 915.8 55.3 536 9-572 14-582 (801)
3 PRK00133 metG methionyl-tRNA s 100.0 2E-107 3E-112 905.4 56.3 536 12-573 2-541 (673)
4 PRK12268 methionyl-tRNA synthe 100.0 2E-104 3E-109 870.2 55.0 541 11-575 2-553 (556)
5 TIGR00398 metG methionyl-tRNA 100.0 7E-103 1E-107 852.7 53.4 521 14-563 1-530 (530)
6 PLN02224 methionine-tRNA ligas 100.0 1.2E-97 3E-102 804.4 54.6 512 8-572 65-590 (616)
7 PRK12267 methionyl-tRNA synthe 100.0 2.8E-97 6E-102 823.0 53.2 504 12-571 4-520 (648)
8 PRK11893 methionyl-tRNA synthe 100.0 2.5E-90 5.5E-95 753.2 51.5 498 12-565 1-511 (511)
9 KOG1247|consensus 100.0 1.5E-89 3.2E-94 666.7 29.1 539 8-573 10-560 (567)
10 PF09334 tRNA-synt_1g: tRNA sy 100.0 3.2E-90 6.8E-95 716.6 22.7 388 14-421 1-391 (391)
11 KOG0436|consensus 100.0 6E-87 1.3E-91 649.7 38.1 508 10-563 37-569 (578)
12 TIGR00422 valS valyl-tRNA synt 100.0 1.1E-81 2.4E-86 717.7 42.4 488 10-534 31-700 (861)
13 PRK14900 valS valyl-tRNA synth 100.0 3.6E-80 7.8E-85 709.0 43.4 486 9-534 45-715 (1052)
14 COG0525 ValS Valyl-tRNA synthe 100.0 7.2E-80 1.6E-84 666.6 41.1 488 12-535 33-700 (877)
15 PRK13208 valS valyl-tRNA synth 100.0 1E-79 2.2E-84 696.6 42.2 485 10-533 36-705 (800)
16 PRK05729 valS valyl-tRNA synth 100.0 1.6E-79 3.5E-84 699.2 41.8 486 10-534 34-693 (874)
17 COG0060 IleS Isoleucyl-tRNA sy 100.0 9.7E-80 2.1E-84 673.8 35.6 490 8-535 45-781 (933)
18 PLN02943 aminoacyl-tRNA ligase 100.0 2.2E-78 4.8E-83 689.8 44.1 488 10-534 86-771 (958)
19 PRK05743 ileS isoleucyl-tRNA s 100.0 1.5E-78 3.3E-83 690.1 40.3 491 9-533 46-769 (912)
20 PRK06039 ileS isoleucyl-tRNA s 100.0 7.8E-78 1.7E-82 689.4 42.9 494 9-534 38-772 (975)
21 PLN02882 aminoacyl-tRNA ligase 100.0 1.3E-77 2.7E-82 689.9 44.5 491 9-534 35-801 (1159)
22 PRK13804 ileS isoleucyl-tRNA s 100.0 6.1E-77 1.3E-81 678.1 42.7 486 9-534 51-808 (961)
23 PLN02843 isoleucyl-tRNA synthe 100.0 2.2E-76 4.9E-81 673.2 43.7 483 10-534 30-797 (974)
24 TIGR00392 ileS isoleucyl-tRNA 100.0 1.4E-76 3E-81 676.7 41.2 490 9-535 33-792 (861)
25 PLN02381 valyl-tRNA synthetase 100.0 2.2E-76 4.7E-81 676.3 42.4 493 9-533 125-871 (1066)
26 PTZ00419 valyl-tRNA synthetase 100.0 2.4E-76 5.2E-81 680.3 41.5 488 9-534 57-805 (995)
27 PTZ00427 isoleucine-tRNA ligas 100.0 1.7E-75 3.7E-80 669.2 42.8 496 9-534 99-906 (1205)
28 TIGR00395 leuS_arch leucyl-tRN 100.0 4E-73 8.7E-78 647.4 40.5 487 10-535 23-779 (938)
29 cd00814 MetRS_core catalytic c 100.0 7.2E-70 1.6E-74 554.5 32.0 316 13-396 1-319 (319)
30 cd00817 ValRS_core catalytic c 100.0 3.9E-69 8.5E-74 560.4 29.3 323 12-396 1-382 (382)
31 TIGR00396 leuS_bact leucyl-tRN 100.0 2.6E-68 5.6E-73 600.1 37.5 456 9-535 26-760 (842)
32 PRK00390 leuS leucyl-tRNA synt 100.0 6.4E-68 1.4E-72 596.1 39.1 445 11-535 31-724 (805)
33 PRK12300 leuS leucyl-tRNA synt 100.0 1.7E-67 3.8E-72 598.6 37.2 467 27-535 1-733 (897)
34 PLN02563 aminoacyl-tRNA ligase 100.0 2.5E-67 5.4E-72 592.3 36.3 460 9-541 107-886 (963)
35 KOG0433|consensus 100.0 3.5E-66 7.5E-71 534.5 34.5 500 8-535 55-798 (937)
36 KOG0432|consensus 100.0 8.2E-65 1.8E-69 534.8 33.2 485 9-534 72-808 (995)
37 PLN02959 aminoacyl-tRNA ligase 100.0 5.5E-64 1.2E-68 576.0 43.0 477 10-532 43-877 (1084)
38 COG0495 LeuS Leucyl-tRNA synth 100.0 5.9E-63 1.3E-67 537.7 33.3 460 12-542 34-745 (814)
39 cd00818 IleRS_core catalytic c 100.0 7.4E-63 1.6E-67 505.1 27.7 303 12-396 1-338 (338)
40 PF00133 tRNA-synt_1: tRNA syn 100.0 9.5E-62 2.1E-66 532.7 23.7 362 8-397 19-601 (601)
41 cd00668 Ile_Leu_Val_MetRS_core 100.0 1.1E-60 2.5E-65 486.4 26.6 294 13-396 1-312 (312)
42 cd00812 LeuRS_core catalytic c 100.0 4.7E-59 1E-63 473.1 22.2 302 13-398 1-314 (314)
43 KOG0434|consensus 100.0 7.6E-57 1.6E-61 460.7 27.2 492 8-534 34-785 (1070)
44 KOG0435|consensus 100.0 4.4E-57 9.6E-62 463.1 23.5 460 10-535 56-782 (876)
45 PTZ00399 cysteinyl-tRNA-synthe 100.0 4.6E-49 9.9E-54 429.6 36.1 384 13-515 62-463 (651)
46 PLN02946 cysteine-tRNA ligase 100.0 8.9E-48 1.9E-52 406.8 33.1 360 12-483 81-444 (557)
47 PRK00260 cysS cysteinyl-tRNA s 100.0 4.3E-47 9.4E-52 403.5 35.4 349 11-483 23-376 (463)
48 PRK14536 cysS cysteinyl-tRNA s 100.0 1.7E-47 3.7E-52 401.0 31.7 363 13-479 23-404 (490)
49 TIGR00435 cysS cysteinyl-tRNA 100.0 6.5E-46 1.4E-50 393.2 35.4 350 10-478 20-375 (465)
50 PRK14534 cysS cysteinyl-tRNA s 100.0 5.7E-46 1.2E-50 387.4 33.1 364 12-479 20-397 (481)
51 PRK12418 cysteinyl-tRNA synthe 100.0 1.7E-46 3.7E-51 382.8 27.4 349 12-485 10-366 (384)
52 TIGR03447 mycothiol_MshC cyste 100.0 1.5E-46 3.2E-51 384.5 26.0 345 10-479 35-387 (411)
53 COG0215 CysS Cysteinyl-tRNA sy 100.0 2.3E-45 5E-50 373.7 28.8 349 12-484 23-378 (464)
54 PRK14535 cysS cysteinyl-tRNA s 100.0 2.7E-45 5.9E-50 388.8 30.2 346 12-480 247-613 (699)
55 PF01406 tRNA-synt_1e: tRNA sy 100.0 4.9E-42 1.1E-46 333.5 18.1 277 13-404 10-298 (300)
56 KOG2007|consensus 100.0 2.1E-40 4.6E-45 331.5 30.0 389 12-515 54-452 (586)
57 PRK01611 argS arginyl-tRNA syn 100.0 1.9E-40 4E-45 357.8 26.9 335 10-485 109-469 (507)
58 KOG0437|consensus 100.0 3.3E-37 7.2E-42 319.1 23.9 489 9-536 41-872 (1080)
59 cd00672 CysRS_core catalytic c 100.0 7.2E-37 1.6E-41 290.7 19.8 193 10-397 19-213 (213)
60 TIGR00456 argS arginyl-tRNA sy 100.0 1E-35 2.2E-40 324.4 27.6 334 11-486 111-528 (566)
61 COG0018 ArgS Arginyl-tRNA synt 100.0 7.8E-35 1.7E-39 311.3 28.9 341 9-487 114-540 (577)
62 cd00674 LysRS_core_class_I cat 100.0 1.1E-34 2.4E-39 293.3 20.0 270 11-399 18-317 (353)
63 PRK12451 arginyl-tRNA syntheta 100.0 1.1E-32 2.4E-37 299.3 29.6 336 10-487 111-527 (562)
64 PLN02286 arginine-tRNA ligase 100.0 1.4E-31 3E-36 290.8 28.1 333 10-487 115-542 (576)
65 PRK00750 lysK lysyl-tRNA synth 100.0 8.5E-32 1.8E-36 288.0 13.6 268 13-398 24-321 (510)
66 TIGR00467 lysS_arch lysyl-tRNA 100.0 4E-29 8.7E-34 265.0 14.3 267 12-401 18-317 (515)
67 cd00671 ArgRS_core catalytic c 99.9 7.2E-27 1.6E-31 224.0 19.8 122 13-143 1-122 (212)
68 PF00750 tRNA-synt_1d: tRNA sy 99.9 2.3E-22 4.9E-27 207.2 17.3 129 7-141 15-199 (354)
69 PF01921 tRNA-synt_1f: tRNA sy 99.9 7.6E-24 1.6E-28 211.6 4.3 259 11-397 21-323 (360)
70 COG1384 LysS Lysyl-tRNA synthe 99.9 2.8E-21 6.1E-26 197.8 12.7 258 13-399 19-320 (521)
71 cd00802 class_I_aaRS_core cata 99.8 4.2E-19 9E-24 159.8 13.8 77 16-97 1-77 (143)
72 KOG4426|consensus 99.8 3.2E-16 6.9E-21 155.2 27.2 329 10-486 186-614 (656)
73 PRK04156 gltX glutamyl-tRNA sy 99.7 9.4E-16 2E-20 163.5 22.4 286 15-410 102-406 (567)
74 cd07957 Anticodon_Ia_Met Antic 99.7 2.6E-16 5.5E-21 139.1 14.9 125 406-532 2-129 (129)
75 cd09287 GluRS_non_core catalyt 99.7 3E-15 6.6E-20 143.2 17.1 96 15-134 2-97 (240)
76 PRK12558 glutamyl-tRNA synthet 99.7 4.6E-15 1E-19 154.6 19.8 94 15-134 3-96 (445)
77 KOG1195|consensus 99.6 1E-14 2.2E-19 147.9 19.4 361 9-515 107-561 (567)
78 TIGR00464 gltX_bact glutamyl-t 99.6 2.7E-13 5.9E-18 144.2 28.5 93 16-134 3-96 (470)
79 PRK12410 glutamylglutaminyl-tR 99.6 2E-14 4.3E-19 149.2 18.4 276 19-403 4-281 (433)
80 PLN03233 putative glutamate-tR 99.6 3.5E-14 7.5E-19 149.7 20.1 95 14-134 11-105 (523)
81 PRK14895 gltX glutamyl-tRNA sy 99.6 6.3E-14 1.4E-18 147.7 18.3 280 15-403 5-287 (513)
82 cd07959 Anticodon_Ia_Leu_AEc A 99.5 1E-13 2.2E-18 120.2 13.8 112 407-532 3-117 (117)
83 PRK01406 gltX glutamyl-tRNA sy 99.5 2E-13 4.4E-18 145.2 18.1 94 15-134 5-106 (476)
84 TIGR00463 gltX_arch glutamyl-t 99.5 1E-12 2.2E-17 140.3 21.8 96 13-134 92-187 (560)
85 PLN02627 glutamyl-tRNA synthet 99.5 6.7E-13 1.5E-17 140.2 20.0 94 15-134 46-148 (535)
86 COG0008 GlnS Glutamyl- and glu 99.5 2.1E-13 4.5E-18 143.1 15.4 94 15-134 10-104 (472)
87 PLN02907 glutamate-tRNA ligase 99.5 1.6E-12 3.5E-17 144.1 22.6 96 13-134 212-307 (722)
88 PRK05347 glutaminyl-tRNA synth 99.5 1.4E-12 3.1E-17 138.0 20.8 95 14-134 29-124 (554)
89 cd07960 Anticodon_Ia_Ile_BEm A 99.5 4.8E-13 1E-17 125.3 14.1 125 407-534 10-141 (180)
90 PTZ00402 glutamyl-tRNA synthet 99.5 3.4E-12 7.4E-17 136.2 21.7 95 14-134 52-147 (601)
91 cd00418 GlxRS_core catalytic c 99.5 2.4E-12 5.3E-17 122.8 16.9 90 15-130 2-92 (230)
92 cd00807 GlnRS_core catalytic c 99.4 1E-11 2.2E-16 118.6 19.8 94 15-134 2-95 (238)
93 PLN02859 glutamine-tRNA ligase 99.4 4.5E-12 9.7E-17 138.5 19.2 94 15-134 265-358 (788)
94 cd00808 GluRS_core catalytic c 99.4 5.8E-12 1.3E-16 121.2 17.6 71 313-386 120-192 (239)
95 TIGR00440 glnS glutaminyl-tRNA 99.4 9.4E-12 2E-16 131.7 20.7 93 16-134 2-95 (522)
96 cd07961 Anticodon_Ia_Ile_ABEc 99.4 2.1E-12 4.5E-17 121.3 14.0 135 396-534 1-142 (183)
97 cd07958 Anticodon_Ia_Leu_BEm A 99.4 2.6E-12 5.6E-17 111.3 12.4 106 411-532 7-117 (117)
98 PRK14703 glutaminyl-tRNA synth 99.4 9.1E-12 2E-16 137.7 19.5 94 15-134 32-126 (771)
99 cd07962 Anticodon_Ia_Val Antic 99.4 5.9E-12 1.3E-16 112.1 13.4 122 407-532 10-135 (135)
100 PF08264 Anticodon_1: Anticodo 99.4 1.5E-12 3.4E-17 118.5 9.5 90 440-532 1-92 (153)
101 TIGR03838 queuosine_YadB gluta 99.4 5.4E-12 1.2E-16 123.9 13.2 92 17-134 3-95 (272)
102 PRK05710 glutamyl-Q tRNA(Asp) 99.4 7.5E-12 1.6E-16 124.2 13.5 94 15-134 6-100 (299)
103 PTZ00437 glutaminyl-tRNA synth 99.4 5.2E-11 1.1E-15 126.1 20.2 94 15-134 52-145 (574)
104 PF00749 tRNA-synt_1c: tRNA sy 99.3 2.1E-11 4.5E-16 123.5 14.9 94 15-134 2-96 (314)
105 cd07375 Anticodon_Ia_like Anti 99.0 5.5E-09 1.2E-13 90.0 12.0 106 410-521 7-117 (117)
106 KOG1149|consensus 98.9 1.4E-06 3E-11 87.9 28.0 94 17-134 36-136 (524)
107 cd07956 Anticodon_Ia_Arg Antic 98.7 3.3E-07 7E-12 83.6 12.8 110 374-486 3-119 (156)
108 KOG1147|consensus 98.4 5.2E-06 1.1E-10 85.8 15.5 98 15-138 201-298 (712)
109 PRK12285 tryptophanyl-tRNA syn 97.9 0.0014 3E-08 67.9 20.8 77 10-104 63-139 (368)
110 PRK12556 tryptophanyl-tRNA syn 97.9 0.0001 2.2E-09 75.3 10.8 74 13-104 4-77 (332)
111 TIGR00233 trpS tryptophanyl-tR 97.8 0.0011 2.4E-08 67.8 17.9 68 21-104 9-76 (328)
112 PF05746 DALR_1: DALR anticodo 97.7 0.00014 2.9E-09 63.0 8.5 75 413-487 1-82 (119)
113 PLN02486 aminoacyl-tRNA ligase 97.7 0.0095 2.1E-07 61.9 23.4 79 9-104 69-148 (383)
114 cd00395 Tyr_Trp_RS_core cataly 97.7 0.00055 1.2E-08 68.2 13.3 69 313-385 156-225 (273)
115 COG0180 TrpS Tryptophanyl-tRNA 97.7 0.00027 5.9E-09 70.6 10.3 88 14-118 6-97 (314)
116 PRK13354 tyrosyl-tRNA syntheta 97.6 0.00042 9.2E-09 72.9 10.8 69 313-386 189-258 (410)
117 PRK12284 tryptophanyl-tRNA syn 97.5 0.00056 1.2E-08 71.2 10.2 89 21-126 9-100 (431)
118 PRK08560 tyrosyl-tRNA syntheta 97.4 0.0014 3E-08 67.2 11.6 76 11-104 28-103 (329)
119 PRK05912 tyrosyl-tRNA syntheta 97.3 0.0013 2.9E-08 69.2 10.7 69 313-386 191-260 (408)
120 cd00806 TrpRS_core catalytic c 97.3 0.0022 4.7E-08 64.2 11.6 68 21-104 6-73 (280)
121 PTZ00126 tyrosyl-tRNA syntheta 97.3 0.0011 2.4E-08 68.9 9.7 78 12-104 65-142 (383)
122 PRK00927 tryptophanyl-tRNA syn 97.1 0.002 4.3E-08 66.2 8.5 66 21-104 8-73 (333)
123 smart00836 DALR_1 DALR anticod 96.8 0.015 3.2E-07 50.4 10.6 74 414-487 2-85 (122)
124 KOG1148|consensus 96.8 0.0045 9.8E-08 65.3 8.1 94 15-134 249-342 (764)
125 COG0162 TyrS Tyrosyl-tRNA synt 96.5 0.0069 1.5E-07 63.0 7.5 52 313-366 183-235 (401)
126 PTZ00348 tyrosyl-tRNA syntheta 95.7 0.075 1.6E-06 59.2 10.9 78 12-104 31-108 (682)
127 cd00805 TyrRS_core catalytic c 93.2 0.1 2.3E-06 51.9 4.5 68 313-386 154-222 (269)
128 PF00579 tRNA-synt_1b: tRNA sy 92.5 0.07 1.5E-06 53.9 2.1 55 313-369 152-213 (292)
129 PRK14714 DNA polymerase II lar 92.3 0.2 4.4E-06 58.3 5.6 73 129-207 657-729 (1337)
130 PLN02886 aminoacyl-tRNA ligase 90.2 1.6 3.6E-05 45.4 9.3 84 14-117 48-134 (389)
131 COG1656 Uncharacterized conser 90.0 0.44 9.6E-06 42.7 4.3 70 41-130 18-91 (165)
132 COG0751 GlyS Glycyl-tRNA synth 87.2 5.1 0.00011 44.5 10.9 111 373-485 541-657 (691)
133 PF09190 DALR_2: DALR domain; 86.4 1.8 3.9E-05 32.5 5.1 26 454-479 2-28 (63)
134 smart00840 DALR_2 This DALR do 85.7 1.7 3.7E-05 31.5 4.6 29 454-482 2-31 (56)
135 PRK01233 glyS glycyl-tRNA synt 85.6 5.8 0.00013 44.7 10.6 112 372-485 531-648 (682)
136 TIGR00234 tyrS tyrosyl-tRNA sy 85.0 0.8 1.7E-05 47.9 3.4 39 14-62 31-70 (377)
137 PRK04023 DNA polymerase II lar 84.8 1.9 4.2E-05 49.3 6.4 77 118-207 607-683 (1121)
138 TIGR00211 glyS glycyl-tRNA syn 83.7 7.7 0.00017 43.8 10.6 112 372-485 541-658 (691)
139 cd00805 TyrRS_core catalytic c 83.6 1.5 3.2E-05 43.7 4.5 71 21-102 7-81 (269)
140 PF00579 tRNA-synt_1b: tRNA sy 83.3 2.4 5.3E-05 42.7 6.1 41 12-62 4-44 (292)
141 PRK12283 tryptophanyl-tRNA syn 83.0 4.2 9.1E-05 42.5 7.6 77 21-115 9-89 (398)
142 PRK12282 tryptophanyl-tRNA syn 82.2 0.75 1.6E-05 47.2 1.8 72 14-104 4-75 (333)
143 PRK14908 glycyl-tRNA synthetas 81.1 11 0.00023 44.2 10.6 110 372-485 856-968 (1000)
144 PRK12283 tryptophanyl-tRNA syn 81.1 0.67 1.4E-05 48.3 1.0 42 338-385 245-288 (398)
145 PF01927 Mut7-C: Mut7-C RNAse 79.0 1.6 3.5E-05 39.1 2.7 115 41-178 12-134 (147)
146 PF13240 zinc_ribbon_2: zinc-r 79.0 1.4 2.9E-05 25.9 1.4 20 158-177 2-22 (23)
147 PF08271 TF_Zn_Ribbon: TFIIB z 77.2 1.7 3.7E-05 29.9 1.8 29 157-185 2-36 (43)
148 PF07754 DUF1610: Domain of un 76.5 1.9 4.2E-05 25.5 1.5 21 142-162 1-23 (24)
149 PRK14559 putative protein seri 76.0 1.9 4.2E-05 48.1 2.7 37 139-179 15-52 (645)
150 PF13248 zf-ribbon_3: zinc-rib 75.4 1.9 4.1E-05 26.1 1.4 21 157-177 4-25 (26)
151 PRK03824 hypA hydrogenase nick 72.7 15 0.00032 32.4 7.0 38 111-150 37-81 (135)
152 PLN02886 aminoacyl-tRNA ligase 72.3 31 0.00068 36.1 10.3 17 352-368 247-267 (389)
153 TIGR00234 tyrS tyrosyl-tRNA sy 70.6 8.8 0.00019 40.2 6.0 54 313-368 180-234 (377)
154 PRK12282 tryptophanyl-tRNA syn 67.7 28 0.00061 35.8 8.8 55 313-368 145-209 (333)
155 PF03833 PolC_DP2: DNA polymer 64.4 2.2 4.8E-05 48.0 0.0 36 157-197 669-704 (900)
156 PRK05978 hypothetical protein; 63.4 4.9 0.00011 35.8 2.0 26 155-180 33-64 (148)
157 PF12773 DZR: Double zinc ribb 63.3 8 0.00017 27.3 2.8 11 169-179 13-23 (50)
158 COG1592 Rubrerythrin [Energy p 62.7 11 0.00025 34.2 4.2 45 111-165 115-159 (166)
159 PF09862 DUF2089: Protein of u 62.2 17 0.00037 30.8 4.9 52 187-239 14-75 (113)
160 KOG2713|consensus 59.9 40 0.00087 33.3 7.6 90 21-125 20-112 (347)
161 PRK14714 DNA polymerase II lar 59.6 6.7 0.00014 46.4 2.7 36 157-197 669-704 (1337)
162 PF01783 Ribosomal_L32p: Ribos 59.6 8.7 0.00019 28.1 2.4 25 157-182 28-52 (56)
163 KOG2145|consensus 58.3 7.2 0.00016 38.3 2.3 34 9-46 81-114 (397)
164 PRK14559 putative protein seri 58.1 8.3 0.00018 43.2 3.1 50 141-196 3-52 (645)
165 COG5270 PUA domain (predicted 57.3 8.8 0.00019 35.1 2.5 23 128-150 3-25 (202)
166 PRK06266 transcription initiat 51.2 10 0.00023 35.1 2.1 18 115-133 50-67 (178)
167 PRK00423 tfb transcription ini 49.9 12 0.00025 38.2 2.4 38 154-191 10-53 (310)
168 COG1198 PriA Primosomal protei 49.1 11 0.00024 42.8 2.2 69 134-219 430-503 (730)
169 KOG2623|consensus 46.6 20 0.00044 36.9 3.4 22 348-369 265-287 (467)
170 PF04405 ScdA_N: Domain of Unk 46.6 12 0.00026 27.4 1.4 46 36-88 4-52 (56)
171 cd07963 Anticodon_Ia_Cys Antic 46.4 31 0.00067 31.0 4.4 35 448-482 32-67 (156)
172 PRK00420 hypothetical protein; 45.9 14 0.0003 31.3 1.8 22 157-178 25-50 (112)
173 KOG2144|consensus 44.8 7.9 0.00017 38.1 0.3 67 21-104 41-112 (360)
174 COG5349 Uncharacterized protei 44.8 10 0.00022 32.2 0.9 26 154-179 20-51 (126)
175 PRK12380 hydrogenase nickel in 44.2 15 0.00032 31.3 1.8 31 134-164 65-95 (113)
176 PRK03681 hypA hydrogenase nick 44.0 15 0.00032 31.3 1.8 31 134-164 65-96 (114)
177 TIGR00373 conserved hypothetic 43.0 13 0.00027 33.8 1.3 20 131-150 101-120 (158)
178 PRK00398 rpoP DNA-directed RNA 42.7 17 0.00036 25.3 1.6 12 186-197 22-33 (46)
179 TIGR00100 hypA hydrogenase nic 41.8 17 0.00038 30.9 1.9 30 135-164 66-95 (115)
180 TIGR00595 priA primosomal prot 41.6 17 0.00037 39.7 2.3 15 134-148 208-222 (505)
181 PF05191 ADK_lid: Adenylate ki 41.1 12 0.00026 24.6 0.6 15 184-198 20-34 (36)
182 PF10571 UPF0547: Uncharacteri 40.8 24 0.00053 21.3 1.8 21 157-177 2-23 (26)
183 PRK06266 transcription initiat 40.6 19 0.00041 33.4 2.0 19 131-149 109-127 (178)
184 smart00659 RPOLCX RNA polymera 40.3 25 0.00054 24.3 2.1 30 171-200 5-34 (44)
185 COG0375 HybF Zn finger protein 38.8 22 0.00048 30.2 2.0 81 83-165 5-96 (115)
186 PF04216 FdhE: Protein involve 38.7 8.1 0.00018 38.9 -0.7 14 141-154 174-187 (290)
187 PRK12496 hypothetical protein; 38.4 23 0.00049 32.4 2.2 13 14-26 3-15 (164)
188 TIGR02443 conserved hypothetic 38.1 13 0.00029 27.3 0.5 26 152-177 5-40 (59)
189 PRK05580 primosome assembly pr 37.6 21 0.00047 40.6 2.3 23 134-163 376-398 (679)
190 PRK04023 DNA polymerase II lar 37.4 27 0.00058 40.6 2.9 36 157-197 628-663 (1121)
191 PRK00432 30S ribosomal protein 36.9 18 0.00039 25.8 1.0 23 141-163 22-45 (50)
192 TIGR03037 anthran_nbaC 3-hydro 36.4 22 0.00048 32.1 1.7 20 135-154 110-129 (159)
193 cd07955 Anticodon_Ia_Cys_like 35.0 77 0.0017 25.0 4.5 29 449-477 28-57 (81)
194 COG1996 RPC10 DNA-directed RNA 34.9 27 0.00058 24.8 1.6 30 171-200 9-39 (49)
195 PF09526 DUF2387: Probable met 34.4 17 0.00036 28.1 0.6 26 152-177 4-39 (71)
196 PRK00564 hypA hydrogenase nick 34.1 33 0.00071 29.4 2.4 48 115-164 41-97 (117)
197 cd01675 RNR_III Class III ribo 33.9 45 0.00097 37.0 4.0 8 93-100 430-437 (555)
198 PRK12286 rpmF 50S ribosomal pr 32.8 27 0.00057 25.7 1.4 21 157-177 29-49 (57)
199 PF12674 Zn_ribbon_2: Putative 31.8 73 0.0016 25.3 3.8 35 210-247 45-80 (81)
200 PF03604 DNA_RNApol_7kD: DNA d 30.6 50 0.0011 21.1 2.2 28 171-198 3-30 (32)
201 PRK14873 primosome assembly pr 30.1 32 0.00068 39.0 2.1 49 134-194 378-431 (665)
202 PRK13264 3-hydroxyanthranilate 29.5 31 0.00068 31.7 1.6 21 134-154 115-135 (177)
203 PRK14704 anaerobic ribonucleos 29.2 59 0.0013 36.4 4.0 20 157-176 561-580 (618)
204 KOG2623|consensus 29.0 70 0.0015 33.2 4.0 48 13-69 63-112 (467)
205 smart00661 RPOL9 RNA polymeras 28.5 36 0.00078 24.0 1.5 12 141-152 2-13 (52)
206 PF14803 Nudix_N_2: Nudix N-te 27.9 22 0.00048 23.1 0.2 12 141-152 2-13 (34)
207 PF07282 OrfB_Zn_ribbon: Putat 27.8 93 0.002 23.4 3.8 24 155-178 28-56 (69)
208 PF03833 PolC_DP2: DNA polymer 27.8 20 0.00043 40.8 0.0 35 157-196 657-691 (900)
209 KOG0909|consensus 27.4 23 0.00051 36.9 0.4 24 170-193 196-225 (500)
210 smart00531 TFIIE Transcription 27.4 32 0.0007 30.7 1.3 21 130-150 90-110 (147)
211 PF09538 FYDLN_acid: Protein o 27.4 45 0.00097 28.1 2.0 24 156-180 10-38 (108)
212 COG2888 Predicted Zn-ribbon RN 26.7 46 0.001 24.5 1.7 24 140-163 10-35 (61)
213 TIGR03042 PS_II_psbQ_bact phot 26.4 3.4E+02 0.0073 24.1 7.3 43 441-483 98-140 (142)
214 PF11023 DUF2614: Protein of u 26.3 38 0.00083 28.4 1.4 26 154-179 68-96 (114)
215 PRK00564 hypA hydrogenase nick 26.1 70 0.0015 27.3 3.1 24 171-194 74-97 (117)
216 PRK12496 hypothetical protein; 25.8 43 0.00092 30.6 1.8 8 169-176 144-151 (164)
217 cd00729 rubredoxin_SM Rubredox 25.8 57 0.0012 21.1 1.9 7 157-163 20-26 (34)
218 KOG4718|consensus 25.4 16 0.00035 34.2 -1.1 78 114-192 135-223 (235)
219 TIGR00244 transcriptional regu 24.6 45 0.00098 29.6 1.6 24 157-180 2-40 (147)
220 TIGR02827 RNR_anaer_Bdell anae 24.6 84 0.0018 34.9 4.0 19 158-176 535-554 (586)
221 cd02156 nt_trans nucleotidyl t 24.5 38 0.00082 28.1 1.1 13 21-34 6-18 (105)
222 TIGR01031 rpmF_bact ribosomal 24.2 38 0.00083 24.7 0.9 21 157-177 28-48 (55)
223 PF01155 HypA: Hydrogenase exp 23.8 40 0.00087 28.6 1.1 80 84-164 6-95 (113)
224 PRK02935 hypothetical protein; 23.6 54 0.0012 27.2 1.7 24 156-179 71-97 (110)
225 PRK00464 nrdR transcriptional 22.3 48 0.001 29.9 1.3 23 157-179 2-39 (154)
226 TIGR00595 priA primosomal prot 22.2 1.8E+02 0.004 31.8 6.1 20 157-176 242-261 (505)
227 TIGR02487 NrdD anaerobic ribon 22.0 96 0.0021 34.6 3.9 19 158-176 527-546 (579)
228 PRK13130 H/ACA RNA-protein com 21.7 54 0.0012 24.0 1.3 19 158-177 8-26 (56)
229 COG3357 Predicted transcriptio 21.6 2.2E+02 0.0048 23.0 4.7 21 113-134 35-55 (97)
230 COG1327 Predicted transcriptio 21.3 58 0.0013 29.0 1.6 23 157-179 2-39 (156)
231 PF07191 zinc-ribbons_6: zinc- 21.1 17 0.00037 27.8 -1.4 21 142-162 4-24 (70)
232 COG4640 Predicted membrane pro 21.0 53 0.0011 33.9 1.5 23 158-180 4-27 (465)
233 KOG2713|consensus 20.5 2.1E+02 0.0046 28.5 5.4 26 338-363 189-219 (347)
234 PRK08579 anaerobic ribonucleos 20.3 99 0.0021 34.7 3.6 20 157-176 570-590 (625)
235 PF08274 PhnA_Zn_Ribbon: PhnA 20.3 36 0.00078 21.4 0.1 20 157-176 4-27 (30)
236 PRK08270 anaerobic ribonucleos 20.3 1.1E+02 0.0023 34.7 3.9 19 158-176 629-647 (656)
No 1
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.2e-119 Score=948.13 Aligned_cols=544 Identities=35% Similarity=0.649 Sum_probs=514.3
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 89 (576)
..++++||+++|||||+|||||+++++.+||++||+|++| ++|.|++|+|+||+||+.+|+++|++|+++|++++
T Consensus 3 ~~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G-----~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~ 77 (558)
T COG0143 3 MMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRG-----YEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNH 77 (558)
T ss_pred CCCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC-----CeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 4578999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCC
Q psy2393 90 SNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGD 169 (576)
Q Consensus 90 ~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~ 169 (576)
+.++++++.|+|++|.|.+|+++.|.+.++++|.+|+ ++|+||.+..++|||+.|++||+|++|+|+||.|+..+++|+
T Consensus 78 ~~~~~~~~~l~IsfD~F~rTt~~~h~~~vq~~f~~L~-~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD 156 (558)
T COG0143 78 EEFKELFKALNISFDNFIRTTSPEHKELVQEFFLKLY-ENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGD 156 (558)
T ss_pred HHHHHHHHHhCCcccccccCCCHHHHHHHHHHHHHHH-HCCCEeccceeeeEcccccccccchheeccCCCcCccccCcc
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred ccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC---CCChhHHHHHHHHHhhcCCCCC
Q psy2393 170 FCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK---RLQPEIVNKIKEWLEKDNKFND 246 (576)
Q Consensus 170 ~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~d 246 (576)
.|++||+.++|.+|++|+|++||+.++.|.+.+|||+| +++++.+++| +++. .+|++.++.+.+|++ .|++|
T Consensus 157 ~Ce~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L--~~~~~~L~~~-~~~~~~~~~p~~~~ne~~~~i~--~GL~d 231 (558)
T COG0143 157 QCENCGRTLDPTELINPVCVISGATPEVREEEHYFFRL--SKFQDKLLEW-YESNPDFIWPANRRNEVLNFLK--EGLKD 231 (558)
T ss_pred hhhhccCcCCchhcCCCeeEeeCCCcccccceeEEEEH--HHhHHHHHHH-HHhCccccCChHHHHHHHHHHH--ccCcc
Confidence 99999999999999999999999999999999999999 9999999999 8764 489999999999999 99999
Q ss_pred cccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHh
Q psy2393 247 WDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHIL 326 (576)
Q Consensus 247 w~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~ 326 (576)
|+|||..++||+|+|+++++++||||||+++|++.+++++. .|. +.+|++||++++++++||+|+||++||++
T Consensus 232 ~~IsR~~~~WGipvP~~p~kv~YVWfDAligYisa~~~~~~-~~~------~~~~~~~W~~~~~e~vhfIGKDii~FHav 304 (558)
T COG0143 232 LSITRTDLDWGIPVPGDPGKVIYVWFDALIGYISALGELAE-IGD------DEDFKKFWPADDTELVHFIGKDIIRFHAV 304 (558)
T ss_pred cceecCCCCCCccCCCCCCCEEEEeeccHHHHHHHhcchhc-cCC------hHHHHhhCCCCCceEEEEeccccCcchhh
Confidence 99999656999999999999999999999999999988775 222 16899999776899999999999999999
Q ss_pred HHHHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhh
Q psy2393 327 FWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVN 406 (576)
Q Consensus 327 ~~~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~ 406 (576)
+|||||++.|.++|+.+++|||++++|+|||||+||+|++.++++. ||+|++||||++..|.+ .|.+||++.+.+++|
T Consensus 305 ~wPamL~~~~~~lP~~i~ahg~l~~~G~KmSKSrG~~V~~~~~~~~-~~~D~lRYyL~~~~p~~-~D~dFs~~~f~~rvN 382 (558)
T COG0143 305 YWPAMLMAAGLPLPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLEQ-YGVDALRYYLARELPEG-SDGDFSWEDFVERVN 382 (558)
T ss_pred HHHHHHHhCCCCCCCEEEeeeeEEECCccccccCCcEEeHHHHHHH-cCchHhHHHHHHhCCCC-CCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999998865 788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCcc----cCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q psy2393 407 SDLIGKYINIASRSSSFIEKYFKGYLNMKW----VKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFD 482 (576)
Q Consensus 407 ~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~----~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~ 482 (576)
+++.+.++|+++|+.+|+.++++|.+|... ..| ..++..+..+.+.+.++|+.+++++|++.+++++..+|+|++
T Consensus 383 ~dL~n~lgNl~~R~~~fi~k~~~g~vp~~~~~~~~~d-~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~ 461 (558)
T COG0143 383 ADLANKLGNLANRTLGFINKYFDGVVPAAGAPDLEED-EELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYID 461 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcCCccccccchhh-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999888743 225 789999999999999999999999999999999999999999
Q ss_pred hcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCc----ccccccccCCCCCcccCCCCCC
Q psy2393 483 QNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP----LQWINIFTPLTQNHKINKYRHL 558 (576)
Q Consensus 483 ~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~----~~~~~~~~~~~~g~~~~~~~~l 558 (576)
..+||.+.++ ..++++++|++.+++++++++++|+||||.+|++||++||.+. ..|.....++..||.++++++|
T Consensus 462 ~~~PW~l~k~-~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 540 (558)
T COG0143 462 EQAPWKLAKE-DKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDARNFTWLGARQPLLPGHKLGPPEPL 540 (558)
T ss_pred cCCCchhhcc-CcHHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCCccccccchhhhhccccCCCcccCCcccC
Confidence 9999999887 4678899999999999999999999999999999999999973 3566666667779999999999
Q ss_pred ccCCChHHHHHHHhccC
Q psy2393 559 MTRVDKNIVDNLLKNKN 575 (576)
Q Consensus 559 f~r~d~~~~~~~~~~~~ 575 (576)
|+|||.++++++.+..+
T Consensus 541 F~ri~~~~~~~~~~~~~ 557 (558)
T COG0143 541 FPRIEEEAIEELIEALK 557 (558)
T ss_pred ccccCHHHHHHHHHhhc
Confidence 99999999999988754
No 2
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=9.6e-109 Score=915.78 Aligned_cols=536 Identities=26% Similarity=0.470 Sum_probs=488.6
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhh-HHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHH
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIME-YIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINN 87 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~-~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~ 87 (576)
+++++++||+|+|||||+|||||+++ ++.+|+++||+|++| ++|.|++|+|+||+||+.+|++.|.+|++++++
T Consensus 14 ~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G-----~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~ 88 (801)
T PLN02610 14 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRG-----YNAIYICGTDEYGTATETKALEENCTPKEICDK 88 (801)
T ss_pred CCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCC-----CceEecccccCCcHHHHHHHHHcCCCHHHHHHH
Confidence 35678999999999999999999996 788999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCC--CCCCC
Q psy2393 88 ISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPI--CNAKD 165 (576)
Q Consensus 88 ~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~--c~~~~ 165 (576)
+++.+++++++|||++|.|++|++++|.+.++++|.+|+ ++|+||++...++||+.|++||+|++|+|+||. |++++
T Consensus 89 ~~~~~~~~~~~l~i~~D~f~rT~~~~h~~~vq~~f~~L~-~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~ 167 (801)
T PLN02610 89 YHAIHKEVYDWFDISFDKFGRTSTPQQTEICQAIFKKLM-ENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDS 167 (801)
T ss_pred HHHHHHHHHHHcCCccccCccCCCHHHHHHHHHHHHHHH-HCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccc
Confidence 999999999999999999999999999999999999999 999999999999999999999999999999999 99999
Q ss_pred CCCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC----CCChhHHHHHHHHHhhc
Q psy2393 166 QYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK----RLQPEIVNKIKEWLEKD 241 (576)
Q Consensus 166 ~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~l~~~ 241 (576)
++|+.|+.||+++++.+|++|+|++||++++++.+++|||+| +++++++.+| +++. .|+++..+.+.+||+
T Consensus 168 a~Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~L--s~~~~~L~~~-~~~~~~~~~~~~n~~~~~~~~l~-- 242 (801)
T PLN02610 168 ARGDQCEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLEL--PLLKDKLVEY-INETSVAGGWSQNAIQTTNAWLR-- 242 (801)
T ss_pred cccchhhhccccCChhhhcCCcccCCCCcceEEEcceEEEEh--HHHHHHHHHH-HHhCCCCCCcCHHHHHHHHHHHh--
Confidence 999999999999999999999999999999999999999999 9999999999 7642 477777788889998
Q ss_pred CCCCCcccccCCCCCCeecCCC--CCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccC-CCcceEEEeee
Q psy2393 242 NKFNDWDISRDAPYFGIKIPNT--LEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISS-PNTEQYHFIGK 318 (576)
Q Consensus 242 ~~~~dw~isR~~~~WG~~iP~~--~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~-~~~~~i~~~G~ 318 (576)
.+++||||||+. .||+|+|.+ +++++||||||+++|++.+..+. .+|..||++ ++++++||+|+
T Consensus 243 ~gL~d~~IsR~~-~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~------------~~~~~~W~~~~~~~~~hfiGK 309 (801)
T PLN02610 243 DGLKPRCITRDL-KWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYT------------PEWEKWWKNPENVELYQFMGK 309 (801)
T ss_pred CCCCCcceeeec-CCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhh------------hHHHHhcCCcccceEEEEEee
Confidence 899999999987 999999976 89999999999999999864332 347789975 36788999999
Q ss_pred cCcchhHhHHHHHHHhcCCC--CCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCccc
Q psy2393 319 DIFYFHILFWPAILKFSGRK--LPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDF 396 (576)
Q Consensus 319 D~~~fh~~~~~a~l~~~~~~--~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~f 396 (576)
||++||+++|||||+++|.+ +|+.+++|||++++|+|||||+||+|+|.++++.+||+|++||||++.++.. .|.+|
T Consensus 310 Di~~fH~i~wPa~L~a~g~~~~~p~~i~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~-~D~dF 388 (801)
T PLN02610 310 DNVPFHTVMFPSTLLGTGENWTMMKTISVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEV-SDTLF 388 (801)
T ss_pred ecchhHHHHHHHHHHhCCCCcCCCCEEEeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCC-CCCcC
Confidence 99999999999999999965 8899999999999999999999999999999994499999999999987766 78899
Q ss_pred chhhHhhhhhHHHHHHHHHHHHHHHHHHH----HHcCCCCCCc----cc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy2393 397 NSQSFISCVNSDLIGKYINIASRSSSFIE----KYFKGYLNMK----WV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVL 467 (576)
Q Consensus 397 s~~~~~~~~~~~~~~~~~n~~~R~~~~~~----~~~~~~~~~~----~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~ 467 (576)
|++.+.+++|+++++.++|+++|+.+++. +++++.+|.. .. .| .+|++.+.++.+.+.++|++++++.|+
T Consensus 389 s~~~f~~~~NsdL~n~lGNlv~R~~~~i~~~~~k~~~g~vp~~~~~~~~~~d-~~Ll~~~~~~i~~v~~~me~~~~~~Al 467 (801)
T PLN02610 389 TWADLQAKLNSELLNNLGNFINRVLSFIAKPPGAGYGSVIPDAPGAESHPLT-KKLAEKVGKLVEQYVEAMEKVKLKQGL 467 (801)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcCCCccccccchhh-HHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999999999998 5677877652 11 25 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCc--ccccc----
Q psy2393 468 YIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP--LQWIN---- 541 (576)
Q Consensus 468 ~~l~~~~~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~--~~~~~---- 541 (576)
+.|+++++.+|+|++..+||.+.+++ ..++.++++++.++++.++++|+||||++|++||++||++. ..|..
T Consensus 468 ~~I~~l~~~~NkYIe~~kPW~L~k~d--~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~~~~~~~~~~~~~~ 545 (801)
T PLN02610 468 KTAMSISSEGNAYLQESQFWKLYKED--KPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNLPPESLSLSDEKGE 545 (801)
T ss_pred HHHHHHHHHHHHHHHhcCchhhhCCC--HHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCCcccccchhcccc
Confidence 99999999999999999999886642 34577889999999999999999999999999999999864 23321
Q ss_pred c------ccCCCCCcccCCCCCCccCCChHHHHHHHh
Q psy2393 542 I------FTPLTQNHKINKYRHLMTRVDKNIVDNLLK 572 (576)
Q Consensus 542 ~------~~~~~~g~~~~~~~~lf~r~d~~~~~~~~~ 572 (576)
+ +..+..||.++++++||+||+.++++++.+
T Consensus 546 ~~~~~~~~~~~~~g~~i~~~~~lF~ri~~~~~~~~~~ 582 (801)
T PLN02610 546 VARAKRPWELVPAGHKIGTPEPLFKELKDEEVEAYRE 582 (801)
T ss_pred ccccccccccCCCCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 0 122456999999999999999999876643
No 3
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.5e-107 Score=905.41 Aligned_cols=536 Identities=50% Similarity=0.927 Sum_probs=494.8
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
++++|++|||||||.+||||+++++.+|+++||+|++| ++|.|++|+|+||+||+.+|++.|.+|++++++|.+.
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G-----~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~ 76 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRG-----HEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAE 76 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcC-----CeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCcc
Q psy2393 92 RKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFC 171 (576)
Q Consensus 92 ~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c 171 (576)
|+++|++|||++|.|++|++++|.+.++++|.+|+ ++|+||+++..+|||+.|++||++++|+|+||.|++.+++|+.|
T Consensus 77 ~~~~~~~l~i~~d~f~rtt~~~h~~~v~~~~~~L~-~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~c 155 (673)
T PRK00133 77 HKRDFAGFGISFDNYGSTHSEENRELAQEIYLKLK-ENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNC 155 (673)
T ss_pred HHHHHHHhCCCCCCCccCCcHHHHHHHHHHHHHHH-HCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchh
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred ccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcC-CCCChhHHHHHHHHHhhcCCCCCcccc
Q psy2393 172 ECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD-KRLQPEIVNKIKEWLEKDNKFNDWDIS 250 (576)
Q Consensus 172 ~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~dw~is 250 (576)
+.||..+++.+|++|+|.+||++++++.++||||+| +++++.+.++ +++ ..||+..++.+.+||+ .+++|||||
T Consensus 156 e~cg~~~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l--~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~--~~l~d~~IS 230 (673)
T PRK00133 156 EVCGATYSPTELINPKSAISGATPVLKESEHFFFKL--PRFEEFLKEW-ITRSGELQPNVANKMKEWLE--EGLQDWDIS 230 (673)
T ss_pred hhccccCChHhhcCCccccCCCcceEEecceEEEEH--HHHHHHHHHH-HhcCCCCCHHHHHHHHHHHh--CCCccccee
Confidence 999999999999999999999999999999999999 9999999999 654 4689999999999999 899999999
Q ss_pred cCCCCC-CeecCCCCCcEEEEEeecccchhhhcchhhhh-CCCCCcccccccccccc-cCCCcceEEEeeecCcchhHhH
Q psy2393 251 RDAPYF-GIKIPNTLEKYFYVWLDAPIGYLASLKNFFEK-GGPKKKYNELRNFDEFI-SSPNTEQYHFIGKDIFYFHILF 327 (576)
Q Consensus 251 R~~~~W-G~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~w-~~~~~~~i~~~G~D~~~fh~~~ 327 (576)
|+. .| |+|+|+++++++|||||++++|++....+... .+ ..|+.|| +++++.++||+|+|+++||+++
T Consensus 231 R~~-~W~GipvP~~~~~~iyVW~dal~~Yl~~~~~~~~~~~~--------~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~ 301 (673)
T PRK00133 231 RDA-PYFGFEIPGAPGKVFYVWLDAPIGYISSTKNLCDKRGG--------LDWDEYWKKDSDTELYHFIGKDIIYFHTLF 301 (673)
T ss_pred eeC-CccceECCCCCCeEEEEcccchhhhhHHHhhhcccccc--------hhHHHhcCCCCCceEEEEEeecchhHHHHH
Confidence 997 89 99999999999999999999999987544332 11 4688899 6767888999999999999999
Q ss_pred HHHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhH
Q psy2393 328 WPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNS 407 (576)
Q Consensus 328 ~~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~ 407 (576)
|||+++++|+++|+.+++||||+++|+|||||+||+|+|.|++++ ||+|++|||+++.++.+..|.+|+++.+....|+
T Consensus 302 wpa~l~a~g~~lP~~v~~hg~v~~~G~KMSKS~GNvV~p~dlie~-ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~ 380 (673)
T PRK00133 302 WPAMLEGAGYRLPTNVFAHGFLTVEGAKMSKSRGTFIWARTYLDH-LDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNS 380 (673)
T ss_pred HHHHHHhCCCCCCCEEeeeccEEecCCcccccCCcccCHHHHHHH-cCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 9999999999998766546889999998888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcCcc
Q psy2393 408 DLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPW 487 (576)
Q Consensus 408 ~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k~~ 487 (576)
+++++++|+++|+.+++.+++++.++.. ..| .++++.+..+.+.+.+++++|+++.+++++++|++.+|+|++..+||
T Consensus 381 ~l~~~l~Nl~~R~~~~~~k~~~~~~~~~-~~d-~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~N~yi~~~kpw 458 (673)
T PRK00133 381 ELVGKVVNFASRTAGFINKRFDGKLPDA-LAD-PELLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNEPW 458 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCC-ccc-HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 9999999999999999887776655431 236 99999999999999999999999999999999999999999999999
Q ss_pred ccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCcccccccccCCCCCcccCCCCCCccCCChHHH
Q psy2393 488 KLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLTQNHKINKYRHLMTRVDKNIV 567 (576)
Q Consensus 488 ~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~~~~~~~~~~~~~g~~~~~~~~lf~r~d~~~~ 567 (576)
.+.++ ...+++.++++++++++.++++|+||||++||+||+.||.+...|+.... +.+||.++++++||+||+.+++
T Consensus 459 ~~~~~--~~~~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~~~~~~~~~~~-~~~g~~~~~~~~lf~~~~~~~~ 535 (673)
T PRK00133 459 KLAKQ--DGERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNLEELTWDDAQQ-PLAGHPINKFKILFTRIEDKQI 535 (673)
T ss_pred hhhcC--CHHHHHHHHHHHHHHHHHHHHHhhChhchHHHHHHHHhCCCccChhhhcC-CCCCCCcCCCCcCCcCCCHHHH
Confidence 77654 23456788899999999999999999999999999999997666765433 4469999999999999999999
Q ss_pred HHHHhc
Q psy2393 568 DNLLKN 573 (576)
Q Consensus 568 ~~~~~~ 573 (576)
+++.++
T Consensus 536 ~~~~~~ 541 (673)
T PRK00133 536 EALIEA 541 (673)
T ss_pred HHHHHH
Confidence 877654
No 4
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.6e-104 Score=870.21 Aligned_cols=541 Identities=35% Similarity=0.649 Sum_probs=493.7
Q ss_pred CCeEEEEcCCCCCCCcccchHhhhH-HHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q psy2393 11 VRRIFVTTALPYANGELHIGHIMEY-IQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (576)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~-i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 89 (576)
.++++|++|||||||.|||||++++ +.+|+++||+|++| ++|.+++|+||||+||+.+|++.|.++.++++++.
T Consensus 2 ~~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G-----~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~ 76 (556)
T PRK12268 2 MMRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKG-----NEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYH 76 (556)
T ss_pred CCcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcC-----CceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHH
Confidence 3579999999999999999999997 99999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCC
Q psy2393 90 SNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGD 169 (576)
Q Consensus 90 ~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~ 169 (576)
+.|.++|++|||++|.+++|++++|.+.++++|.+|+ ++|++|++.++++||+.|+++|++++|.|+||.|+..+++|+
T Consensus 77 ~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~-~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~ 155 (556)
T PRK12268 77 EEHKEDFKKLGISYDLFTRTTSPNHHEVVQEFFLKLY-ENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGD 155 (556)
T ss_pred HHHHHHHHHcCCcCCCCcCCCCHHHHHHHHHHHHHHH-HCCCeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCc
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999998889999
Q ss_pred ccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcC-CCCChhHHHHHHHHHhhcCCCCCcc
Q psy2393 170 FCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD-KRLQPEIVNKIKEWLEKDNKFNDWD 248 (576)
Q Consensus 170 ~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~dw~ 248 (576)
.|+.||..+++.++++|+|++||++++++.++||||++ +++++.+.++ +++ ..+|+..++++.+|++ .+++|||
T Consensus 156 ~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l--~~~~~~l~~~-~~~~~~~p~~~~~~~~~~l~--~~l~Dw~ 230 (556)
T PRK12268 156 QCDNCGALLDPTDLINPRSKISGSTPEFRETEHFFLDL--PAFAERLRAW-IESSGDWPPNVLNFTLNWLK--EGLKPRA 230 (556)
T ss_pred hhhhccccCChHHhcCCccccCCCcCeEEecceEEEEh--HHHHHHHHHH-HhhccCCCHHHHHHHHHHHh--CCCCCcC
Confidence 99999999999999999999999999999999999999 9999999999 765 4799999999999998 8999999
Q ss_pred cccCCCCCCeecC--CCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHh
Q psy2393 249 ISRDAPYFGIKIP--NTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHIL 326 (576)
Q Consensus 249 isR~~~~WG~~iP--~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~ 326 (576)
||||+ .||+|+| .++++++|||||++.+|++....+.+..|.+ ..|+++|.+++...++++|+|+++||..
T Consensus 231 ISR~~-~WGipiP~~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~------~~~~~~w~ds~~~~~~~~G~D~~~Fh~~ 303 (556)
T PRK12268 231 ITRDL-DWGIPVPWPGFEGKVFYVWFDAVIGYISASKEWAERTGDP------EAWKEFWLDPETKSYYFIGKDNIPFHSI 303 (556)
T ss_pred ceeeC-CCCeeCCCCCCCCcEEEEeehHhhHHHHHHHHHHHhcCCc------hHHHHHhCCCCCeEEEEEeeccCcchHH
Confidence 99999 8999999 7789999999999999988766555443321 4677899766677899999999999999
Q ss_pred HHHHHHHhcC--CCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhh
Q psy2393 327 FWPAILKFSG--RKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISC 404 (576)
Q Consensus 327 ~~~a~l~~~~--~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~ 404 (576)
+|++++++.+ .+.|+.+++||||+++|+|||||+||+|+|.|++++ ||+|++|||+++.++.. +|++|+++.+...
T Consensus 304 ~~p~~l~~~~~~~~~P~~v~~~G~v~~~G~KMSKS~GN~I~p~dli~~-yGaDalR~~ll~~~~~~-~d~~f~~~~~~~~ 381 (556)
T PRK12268 304 IWPAMLLGSGEPLKLPDEIVSSEYLTLEGGKFSKSRGWGIWVDDALER-YPPDYLRYYLAANAPEN-SDTDFTWEEFVRR 381 (556)
T ss_pred HHHHHHHhcCCCCCCCCEeeccCCEEECCeeeccCCCcccCHHHHHHH-cCcHHHHHHHHhcCCCC-CCCCCCHHHHHHH
Confidence 9999999988 788999999999999999999999999999999999 99999999999875544 7889999998877
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q psy2393 405 VNSDLIGKYINIASRSSSFIEKYFKGYLNM-KWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFD 482 (576)
Q Consensus 405 ~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~-~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~ 482 (576)
.+++++++++|+++|+.+++.+..++.++. ... .| +|+++.+..+.+.+.+++++|+++.|++++++|++.+|+|++
T Consensus 382 ~~~~~~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~d-~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~~~~n~yi~ 460 (556)
T PRK12268 382 VNSELADKYGNLVNRVLSFIEKYFGGIVPPGELGDED-RELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYLD 460 (556)
T ss_pred HhHHhhhhHHHHHHHHHHHHHHhcCCcCCCCcCCccc-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 788889999999999999988765554442 222 26 999999999999999999999999999999999999999999
Q ss_pred hcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCC---cccccccccCCCCCcccCCCCCCc
Q psy2393 483 QNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNIS---PLQWINIFTPLTQNHKINKYRHLM 559 (576)
Q Consensus 483 ~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~---~~~~~~~~~~~~~g~~~~~~~~lf 559 (576)
..+||.+.++ ....++.+++++.++++.++++|+|||||+||+||+.||.+ ...|+.+. .++.||.|+.+++||
T Consensus 461 ~~kpw~~~~~--~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~~~~~~~~w~~~~-~~~~g~~i~~~~~lf 537 (556)
T PRK12268 461 EKAPWKLAKT--DRERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGGENIEKLTWESLK-PLLPGHPINKPEPLF 537 (556)
T ss_pred cCCChhhhcC--CHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHhCCCCCcccchhhhc-CCCCCCCCCCCCCCC
Confidence 9999977543 24456778888889999999999999999999999999973 35787654 356799999999999
Q ss_pred cCCChHHHHHHHhccC
Q psy2393 560 TRVDKNIVDNLLKNKN 575 (576)
Q Consensus 560 ~r~d~~~~~~~~~~~~ 575 (576)
+||+.++|++++++-+
T Consensus 538 ~r~~~~~~~~~~~~~~ 553 (556)
T PRK12268 538 KKIDDEQIEEELERLG 553 (556)
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9999999999998754
No 5
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=6.6e-103 Score=852.68 Aligned_cols=521 Identities=36% Similarity=0.662 Sum_probs=475.1
Q ss_pred EEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy2393 14 IFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRK 93 (576)
Q Consensus 14 ~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 93 (576)
++|++|||||||.+||||+++++.+|+++||+|++| ++|.+++|+||||+||+.+|+++|++|+++++.+.+.|+
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G-----~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~ 75 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRG-----YEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFK 75 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcC-----CeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCcccc
Q psy2393 94 KYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCEC 173 (576)
Q Consensus 94 ~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~ 173 (576)
+++++|||++|.+++|+++.|...++++|.+|. ++|++|+++..++||+.|+++|+|++|+|+||.|+..+++|+.|+.
T Consensus 76 ~~l~~LgI~~D~~~~t~~~~~~~~v~~~~~~L~-~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~ 154 (530)
T TIGR00398 76 DDWKWLNISFDRFIRTTDEEHKEIVQKIFQKLK-ENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEV 154 (530)
T ss_pred HHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHH-HCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhh
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcC----CCCChhHHHHHHHHHhhcCCCCCccc
Q psy2393 174 CSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD----KRLQPEIVNKIKEWLEKDNKFNDWDI 249 (576)
Q Consensus 174 cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~dw~i 249 (576)
||..+++.++++|+|++||++++++.++||||+| +++++.+.++ +++ ..+|+..++.+.+|++ ++++||||
T Consensus 155 cg~~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l--~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~--~~l~d~~i 229 (530)
T TIGR00398 155 CGRHLEPTELINPRCKICGAKPELRDSEHYFFRL--SAFEKELEEW-IRKNPESGSPASNVKNKAQNWLK--GGLKDLAI 229 (530)
T ss_pred ccccCCHHHhcCCccccCCCcceEEecceEEEEh--HHHHHHHHHH-HHhCCccCCCcHHHHHHHHHHHh--CCCCCccc
Confidence 9999999999999999999999999999999999 9999999999 763 3577788899999999 78999999
Q ss_pred ccCCCC-CCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCC-CcceEEEeeecCcchhHhH
Q psy2393 250 SRDAPY-FGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSP-NTEQYHFIGKDIFYFHILF 327 (576)
Q Consensus 250 sR~~~~-WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~-~~~~i~~~G~D~~~fh~~~ 327 (576)
||++ . ||+|+|.++++++|||||++++|++..+.. .|. ..+++++|+.+ +++++|++|+||++||+++
T Consensus 230 SR~~-~~WGipvP~~~~~~~yvW~da~~~y~~~~~~~---~~~------~~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~ 299 (530)
T TIGR00398 230 TRDL-VYWGIPVPNDPNKVVYVWFDALIGYISSLGIL---SGD------TEDWKKWWNNDEDAELIHFIGKDIVRFHTIY 299 (530)
T ss_pred cCcC-CCCCeeCCCCCCcEEEEeecchHHhHhhhccc---cCC------hhhHHHhCCCCCCceEEEEEecccchhHHHH
Confidence 9999 7 999999999999999999999999865321 110 14578899764 7889999999999999999
Q ss_pred HHHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhH
Q psy2393 328 WPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNS 407 (576)
Q Consensus 328 ~~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~ 407 (576)
|+++++++|+++|+.+++||||+++|+|||||+||+|+|+|+++. ||+|++|||+++.++ ...|++|+++.+.+..|+
T Consensus 300 ~~a~l~~~~~~~~~~~~~~g~v~~~g~KmSKS~Gn~i~~~d~i~~-~g~D~lR~~l~~~~~-~~~d~~f~~~~l~~~~n~ 377 (530)
T TIGR00398 300 WPAMLMGLGLPLPTQVFSHGYLTVEGGKMSKSLGNVVDPSDLLAR-FGADILRYYLLKERP-LGKDGDFSWEDFVERVNA 377 (530)
T ss_pred HHHHHHhCCCCCCCEEEeeccEEECCceecccCCceecHHHHHHH-cCchHHHHHHhhCCC-CCCCCCCCHHHHHHHHHH
Confidence 999999999988999999999999999999999999999999999 999999999998754 447899999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCc--cc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhc
Q psy2393 408 DLIGKYINIASRSSSFIEKYFKGYLNMK--WV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQN 484 (576)
Q Consensus 408 ~~~~~~~n~~~R~~~~~~~~~~~~~~~~--~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~ 484 (576)
+++++++|+++|+.+++.++.++.++.. .. .| .++++.+..+.+.+.+++++|+++.+++++++|++.+|+|++.+
T Consensus 378 ~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d-~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~n~Yi~~~ 456 (530)
T TIGR00398 378 DLANKLGNLLNRTLGFIKKYFNGVLPSEDITDEED-KKLLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDEN 456 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCCCCcccchhh-HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999887665555532 12 26 99999999999999999999999999999999999999999999
Q ss_pred CccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCcccccccccCCCCCcccCCCCCCccCCC
Q psy2393 485 KPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLTQNHKINKYRHLMTRVD 563 (576)
Q Consensus 485 k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~~~~~~~~~~~~~g~~~~~~~~lf~r~d 563 (576)
+||.+.+++ . +.+.+++++.+++++++++|+|||||+||+||+.||.+...|. ...+.+||.++++++||+|||
T Consensus 457 kpw~~~~~~--~-~~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~~~~~~~~--~~~~~~~~~i~~~~~lf~ki~ 530 (530)
T TIGR00398 457 KPWELFKQS--P-RLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNFELEWDF--KLKLLEGHKLNKAEPLFSKIE 530 (530)
T ss_pred CChhhcCCh--H-HHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCChhhhh--hcCCCCCCCCCCCCCCCCCCC
Confidence 999887542 2 4567778888999999999999999999999999998643332 122446999999999999997
No 6
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=1.2e-97 Score=804.43 Aligned_cols=512 Identities=24% Similarity=0.412 Sum_probs=449.8
Q ss_pred cCCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHH
Q psy2393 8 FKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINN 87 (576)
Q Consensus 8 ~~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~ 87 (576)
...+++|+|++|||||||+|||||+++++++|+++||+|++| ++|.|++|+||||+||+.+|++.|.+|.++|++
T Consensus 65 ~~~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G-----~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~ 139 (616)
T PLN02224 65 VDEADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLG-----KKVIFITGTDEHGEKIATSAAANGRNPPEHCDI 139 (616)
T ss_pred CCCCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcC-----CceEEecCcCCcchHHHHHHHHcCCChHHHHHH
Confidence 345678999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCC
Q psy2393 88 ISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQY 167 (576)
Q Consensus 88 ~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~ 167 (576)
+.+.+++.+++|||++|.|++|+++.|.+.++++|.+|+ ++|+||+++.++|||++|++++.+.
T Consensus 140 ~~~~~~~~~~~l~I~~D~f~rTt~~~h~~~vq~~f~~L~-~~G~Iy~~~~~~~yc~~ce~f~~~~--------------- 203 (616)
T PLN02224 140 ISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKEFYARVF-ANGDIYRADYEGLYCVNCEEYKDEK--------------- 203 (616)
T ss_pred HHHHHHHHHHHcCCCCCcCeeCCCHHHHHHHHHHHHHHH-HCCCEEEeeeeeeecCCCCCCCCHH---------------
Confidence 999999999999999999999999999999999999999 9999999999999987777666543
Q ss_pred CCccccCCCcCCCCccCC-CcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC--CC-ChhHHHHHHHHHhhcCC
Q psy2393 168 GDFCECCSSIYTPTKLIN-PYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK--RL-QPEIVNKIKEWLEKDNK 243 (576)
Q Consensus 168 g~~c~~cg~~~~~~~l~~-p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~~ 243 (576)
++++ +.|..||++++++.+++|||+| +++++.+.+| ++.. ++ |+..++.+.+||+ ++
T Consensus 204 --------------~l~~~~~~~~~~~~~~~~~e~~~ff~L--s~~~~~L~~~-~~~~~~~~~p~~~~~~~~~~l~--~g 264 (616)
T PLN02224 204 --------------ELLENNCCPVHQMPCVARKEDNYFFAL--SKYQKPLEDI-LAQNPRFVQPSYRLNEVQSWIK--SG 264 (616)
T ss_pred --------------HHcCCCCCCCCCCcceEEecceEEEEh--HHHHHHHHHH-HHhCCCccCCHHHHHHHHHHHh--cC
Confidence 4433 5677889999999999999999 9999999999 6543 34 6667799999999 89
Q ss_pred CCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcch
Q psy2393 244 FNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYF 323 (576)
Q Consensus 244 ~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~f 323 (576)
++||||||+...||+|+|.++++++||||||+++|++.++.+....|. ...+..+|+.. +||+|+|+++|
T Consensus 265 L~d~~ISR~~~~WGIpvP~~~~~viYVWfDAl~~Yls~~~~~~~~~~~------~~~~~~~w~~~----v~~iGKDii~f 334 (616)
T PLN02224 265 LRDFSISRALVDWGIPVPDDDKQTIYVWFDALLGYISALTEDNKQQNL------ETAVSFGWPAS----LHLIGKDILRF 334 (616)
T ss_pred CCCccccCCCCCCceECCCCCCcEEEEehhhHHHHHHHhccccccccc------chhhccCCCcc----eEEEeeccccc
Confidence 999999998547999999999999999999999999988765433221 01134467643 99999999999
Q ss_pred hHhHHHHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhh
Q psy2393 324 HILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFIS 403 (576)
Q Consensus 324 h~~~~~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~ 403 (576)
|+++|||+++++|+++|+.+++|||++++|+|||||+||+|+|.++++. ||+|++||||++.++ ...|.+|+++.+.+
T Consensus 335 H~i~wpa~l~~~g~~~P~~i~~~g~l~~eG~KMSKS~GN~i~p~e~l~~-ygaD~~R~yLl~~~p-~~~d~~fs~~~~~~ 412 (616)
T PLN02224 335 HAVYWPAMLMSAGLELPKMVFGHGFLTKDGMKMGKSLGNTLEPFELVQK-FGPDAVRYFFLREVE-FGNDGDYSEDRFIK 412 (616)
T ss_pred HHHHHHHHHHHCCCCCCcEEEecccEecCCccccccCCccCCHHHHHHH-cCcHHHHHHHHhcCC-CcCCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 999999999999865 45888999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-c-c-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q psy2393 404 CVNSDLIGKYINIASRSSSFIEKYFKGYLNMK-W-V-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIF 480 (576)
Q Consensus 404 ~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~-~-~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y 480 (576)
..|+++++.++|+++|+..++.+++++.++.. . . .| .++++.+.++.+.+.++|+++++++|++.++++++.+|+|
T Consensus 413 ~~NseLan~lgNll~R~l~~~~k~~~~~~~~~~~~~~~d-~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~~~~N~Y 491 (616)
T PLN02224 413 IVNAHLANTIGNLLNRTLGLLKKNCESTLVEDSTVAAEG-VPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIGNAGNTY 491 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcccccccc-HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988877765542 1 1 25 8999999999999999999999999999999999999999
Q ss_pred hhhcCccccccCcc-cHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCc-----ccccccc-cCCCCCcccC
Q psy2393 481 FDQNKPWKLAKNNI-YHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP-----LQWINIF-TPLTQNHKIN 553 (576)
Q Consensus 481 ~~~~k~~~~~~~~~-~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~-----~~~~~~~-~~~~~g~~~~ 553 (576)
++..+||.+.+++. ...++.++++++++++++++++|+||||++||+||+.||.+. ..|.... ..+.+|+.++
T Consensus 492 i~~~~PW~l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~~~~~~~~~~~~~~~~~~~~~g~~i~ 571 (616)
T PLN02224 492 MDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGYSEDQFNSITWSDTKWGGLKGGQVME 571 (616)
T ss_pred HHhCCchhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCCCcccccccchhhhccccCCCCCCCC
Confidence 99999998755432 234566778889999999999999999999999999999753 2454321 2355699999
Q ss_pred CCCCCccCCChHHHHHHHh
Q psy2393 554 KYRHLMTRVDKNIVDNLLK 572 (576)
Q Consensus 554 ~~~~lf~r~d~~~~~~~~~ 572 (576)
++++||+||++++++++.|
T Consensus 572 ~~~~Lf~ri~~~~~~~~~~ 590 (616)
T PLN02224 572 QASPVFARIELNPEKEEDE 590 (616)
T ss_pred CCCCCCCCcCcchHHHHHH
Confidence 9999999999877765443
No 7
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.8e-97 Score=822.96 Aligned_cols=504 Identities=27% Similarity=0.491 Sum_probs=453.3
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
++++||+|+|||||++||||+++++++|+++||+|++| ++|.|++|+|+||+||+.+|++.|.+|+++++++.+.
T Consensus 4 ~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G-----~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~ 78 (648)
T PRK12267 4 KTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQG-----YDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAG 78 (648)
T ss_pred CCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcC-----CceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCcc
Q psy2393 92 RKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFC 171 (576)
Q Consensus 92 ~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c 171 (576)
|+++|++|||++|.|++|+++.|...++++|.+|+ ++|+||+++..++||+.|++||++++
T Consensus 79 fk~~l~~lgI~~D~f~rTt~~~h~~~v~~~~~~L~-~kG~IY~~~~~~~yc~~~~~~l~~~~------------------ 139 (648)
T PRK12267 79 FKELWKKLDISYDKFIRTTDERHKKVVQKIFEKLY-EQGDIYKGEYEGWYCVSCETFFTESQ------------------ 139 (648)
T ss_pred HHHHHHHcCCCCCCCeeCCCHHHHHHHHHHHHHHH-HCCCEEEeeEEEeecCCCCccCChHH------------------
Confidence 99999999999999999999999999999999999 99999999999999999988888764
Q ss_pred ccCCCcCCCCccCC-CcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC---CCChhHHHHHH-HHHhhcCCCCC
Q psy2393 172 ECCSSIYTPTKLIN-PYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK---RLQPEIVNKIK-EWLEKDNKFND 246 (576)
Q Consensus 172 ~~cg~~~~~~~l~~-p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~---~~~~~~~~~~~-~~l~~~~~~~d 246 (576)
+++ |+|++||++++++.++||||+| +++++.+.++ +++. .+|+..++.+. +|++ ++++|
T Consensus 140 -----------l~~~~~c~~cg~~~e~~~~~~~f~~l--~~~~~~l~~~-~~~~~~~~~p~~~~~~~~~~~l~--~~l~D 203 (648)
T PRK12267 140 -----------LVDGGKCPDCGREVELVKEESYFFRM--SKYQDRLLEY-YEENPDFIQPESRKNEMINNFIK--PGLED 203 (648)
T ss_pred -----------hccCCcCCCCCCcCeEEecceEEEEc--HHHHHHHHHH-HhhCCcccCCHHHHHHHHHHHhh--CCCCC
Confidence 344 6778888999999999999999 9999999999 7653 35777888888 9999 88999
Q ss_pred cccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHh
Q psy2393 247 WDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHIL 326 (576)
Q Consensus 247 w~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~ 326 (576)
|||||++..||+|+|.++++++||||||+++|++..+. ....| .+|.+|||.+ +|++|+||++||++
T Consensus 204 ~~ISR~~~~WGipvP~~~~~v~yVWfDA~~~y~s~~~~-~~~~~--------~~~~~~wp~~----~~~~GkDii~fH~i 270 (648)
T PRK12267 204 LSISRTSFDWGIPVPFDPKHVVYVWIDALLNYITALGY-GSDDD--------ELFKKFWPAD----VHLVGKDILRFHAI 270 (648)
T ss_pred cccCCCCCCcceECCCCCCCEEEEcccchHHHHHHcCC-CCCCc--------hHHHhhcccc----eEEEeeeecchhHH
Confidence 99999975799999999999999999999999998752 22222 4688899754 99999999999999
Q ss_pred HHHHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhh
Q psy2393 327 FWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVN 406 (576)
Q Consensus 327 ~~~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~ 406 (576)
+||++++++|+++|+.+++|||++++|+|||||+||+|+|.++++. ||+|++|||+++.++.. .|.+|+++.+.+..|
T Consensus 271 ~wpa~l~~~~~~~p~~v~~hg~l~~eg~KMSKS~GN~i~p~d~l~~-ygaD~lR~~L~~~~~~~-~D~~fs~~~~~~~~n 348 (648)
T PRK12267 271 YWPIMLMALGLPLPKKVFAHGWWLMKDGKMSKSKGNVVDPEELVDR-YGLDALRYYLLREVPFG-SDGDFSPEALVERIN 348 (648)
T ss_pred HHHHHHHhCCCCCCcEEEecceEEECCceecccCCcccCHHHHHHH-cCCcHHHHHHHhcCCCC-CCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999876654 789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCC--cccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhh
Q psy2393 407 SDLIGKYINIASRSSSFIEKYFKGYLNM--KWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQ 483 (576)
Q Consensus 407 ~~~~~~~~n~~~R~~~~~~~~~~~~~~~--~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~ 483 (576)
+++.++++|+++|+.+++.+++++.+|. .+.. | .++++.+..+.+.+.++|++++++.|++.+++|+..+|+|++.
T Consensus 349 ~~l~~~lgNl~~R~~~~~~~~~~~~~p~~~~~~~~D-~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~~~~N~Yi~~ 427 (648)
T PRK12267 349 SDLANDLGNLLNRTVAMINKYFDGEIPAPGNVTEFD-EELIALAEETLKNYEELMEELQFSRALEEVWKLISRANKYIDE 427 (648)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCcCCCCCCCchhh-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998877777663 2222 5 9999999999999999999999999999999999999999999
Q ss_pred cCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCc--ccccccc--cCCCCCcccCCCCCCc
Q psy2393 484 NKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP--LQWINIF--TPLTQNHKINKYRHLM 559 (576)
Q Consensus 484 ~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~--~~~~~~~--~~~~~g~~~~~~~~lf 559 (576)
.+||...+++....++++++++++++++.++++|+||||++|++||+.||.+. ..|..+. ..+.+||.++++++||
T Consensus 428 ~kpW~~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~~~~~~~~~~g~~~~~~~~lf 507 (648)
T PRK12267 428 TAPWVLAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLGLEEELTSWESLLEWGGLPAGTKVAKGEPLF 507 (648)
T ss_pred CCChhhhcCcccHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHcCCCccccchhhhhhhccccCCCccCCCCCCc
Confidence 99998765433456678889999999999999999999999999999999863 4564432 3356799999999999
Q ss_pred cCCChH-HHHHHH
Q psy2393 560 TRVDKN-IVDNLL 571 (576)
Q Consensus 560 ~r~d~~-~~~~~~ 571 (576)
+||+.+ ++++..
T Consensus 508 ~k~~~~~~~~~~~ 520 (648)
T PRK12267 508 PRIDVEEEIAYIK 520 (648)
T ss_pred CCCCcHHHHHHHH
Confidence 999975 564433
No 8
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.5e-90 Score=753.23 Aligned_cols=498 Identities=27% Similarity=0.491 Sum_probs=440.9
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
++++|++|||||||++||||+|+++.+|+++||+|++| ++|.+++|+||||+||+.+|++.|+++.++++++.+.
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G-----~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~ 75 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRG-----YDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAA 75 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcC-----CcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCcc
Q psy2393 92 RKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFC 171 (576)
Q Consensus 92 ~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c 171 (576)
|+++|++|||++|.|++|+++.|.+.++++|.+|. ++|++|++...+|||+.|+++++++++
T Consensus 76 ~~~~l~~l~I~~D~~~~t~~~~~~~~v~~~~~~L~-~~G~iY~~~~~~~~~~~~~~~l~~~~l----------------- 137 (511)
T PRK11893 76 FKRLWEALNISYDDFIRTTDPRHKEAVQEIFQRLL-ANGDIYLGKYEGWYCVRCEEFYTESEL----------------- 137 (511)
T ss_pred HHHHHHHhCCCcCCceeCCCHHHHHHHHHHHHHHH-HCCCEEEeeeeeeccccccccCCHHHh-----------------
Confidence 99999999999999999999999999999999999 999999999999999888888886543
Q ss_pred ccCCCcCCCCccCC--CcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcC--C-CCChhHHHHHHHHHhhcCCCCC
Q psy2393 172 ECCSSIYTPTKLIN--PYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD--K-RLQPEIVNKIKEWLEKDNKFND 246 (576)
Q Consensus 172 ~~cg~~~~~~~l~~--p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~--~-~~~~~~~~~~~~~l~~~~~~~d 246 (576)
++ |+|++||++++++.++|||++| +.+++.+.++ +++ . .+|+..++.+.+|++ ++++|
T Consensus 138 ------------~~~~p~~~~~~~~~~~~~~~~~f~~l--~~~~~~l~~~-~~~~~~~~~p~~~~~~~~~~l~--~~~~D 200 (511)
T PRK11893 138 ------------IEDGYRCPPTGAPVEWVEEESYFFRL--SKYQDKLLEL-YEANPDFIQPASRRNEVISFVK--SGLKD 200 (511)
T ss_pred ------------cCCCCCCCCCCCcceEEecCeEEEEc--HHHHHHHHHH-HHhCCCccCCHHHHHHHHHHHH--CCCCC
Confidence 33 7799999999999999999999 9999999999 655 2 357778889999998 78999
Q ss_pred ccccc-CCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhH
Q psy2393 247 WDISR-DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHI 325 (576)
Q Consensus 247 w~isR-~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~ 325 (576)
||||| ++ +||+|+|+++++++|||||+.++|++..+......+ . .+++..+|+.+ +|++|+|+++||+
T Consensus 201 ~~isR~~~-~WGipiP~~~~~~~~vWfda~~~y~s~~~~p~~~~~----~--~~~~~~~~~~D----~~~~G~D~~~~h~ 269 (511)
T PRK11893 201 LSISRTNF-DWGIPVPGDPKHVIYVWFDALTNYLTALGYPDDEEL----L--AELFNKYWPAD----VHLIGKDILRFHA 269 (511)
T ss_pred cccCCCCC-CCCccCCCCCCceEEEEecCcHHHHhHhcccccccc----c--hhHHHhcCCCc----ceEecccccccch
Confidence 99999 87 999999999999999999999999987543111110 0 02477788743 8999999999999
Q ss_pred hHHHHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhh
Q psy2393 326 LFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCV 405 (576)
Q Consensus 326 ~~~~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~ 405 (576)
.+|+|++++++.+.|+++++||||+++|+|||||+||+|++.|++++ ||+|++|||+++.++ ...|++|+++.+....
T Consensus 270 ~~~~a~~~a~~~~~p~~~~~~g~v~~~G~KMSKS~GN~i~~~dll~~-~g~DalR~~ll~~~~-~~~d~~Fs~~~~~~~~ 347 (511)
T PRK11893 270 VYWPAFLMAAGLPLPKRVFAHGFLTLDGEKMSKSLGNVIDPFDLVDE-YGVDAVRYFLLREIP-FGQDGDFSREAFINRI 347 (511)
T ss_pred hHHHHHHHhCCCCCCCEEEeeccEEECCeeecccCCcEEcHHHHHHH-cCcHHHHHHHHhcCC-CCcCCCCCHHHHHHHH
Confidence 99999999988889999999999999999999999999999999999 999999999999754 4578999999998888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCCC--cccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q psy2393 406 NSDLIGKYINIASRSSSFIEKYFKGYLNM--KWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFD 482 (576)
Q Consensus 406 ~~~~~~~~~n~~~R~~~~~~~~~~~~~~~--~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~ 482 (576)
|+++.++++|+++|+.+++.+..++.+|. .+.. | .++++.+..+.+.+.++|++++++.|++.|++|++.+|.|++
T Consensus 348 ~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d-~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~ 426 (511)
T PRK11893 348 NADLANDLGNLAQRTLSMIAKNFDGKVPEPGALTEAD-EALLEAAAALLERVRAAMDNLAFDKALEAILALVRAANKYID 426 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhh-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 88899999999999999988765544443 2222 5 899999999999999999999999999999999999999999
Q ss_pred hcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCc-c--ccccc-ccCCCCCcccCCCCCC
Q psy2393 483 QNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP-L--QWINI-FTPLTQNHKINKYRHL 558 (576)
Q Consensus 483 ~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~-~--~~~~~-~~~~~~g~~~~~~~~l 558 (576)
.++||...++ ...++++++.++.++++.++++|+||||++||+||+.||.+. . .|+.+ ...+.+|+.++.+++|
T Consensus 427 ~~~pw~~~~~--~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 504 (511)
T PRK11893 427 EQAPWSLAKT--DPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGVEEDENRDFAALSWGRLAPGTTLPKPEPI 504 (511)
T ss_pred hCCChhhhcC--CHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhCCCcccccchhhhhcccCCCCCCCCCCCCC
Confidence 9999976543 244678889999999999999999999999999999999752 2 34422 2446679999999999
Q ss_pred ccCCChH
Q psy2393 559 MTRVDKN 565 (576)
Q Consensus 559 f~r~d~~ 565 (576)
|+||+.+
T Consensus 505 f~~~~~~ 511 (511)
T PRK11893 505 FPRLEEE 511 (511)
T ss_pred ccCCCCC
Confidence 9999864
No 9
>KOG1247|consensus
Probab=100.00 E-value=1.5e-89 Score=666.71 Aligned_cols=539 Identities=24% Similarity=0.468 Sum_probs=495.3
Q ss_pred cCCCCeEEEEcCCCCCCCcccchHhhh-HHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHH
Q psy2393 8 FKDVRRIFVTTALPYANGELHIGHIME-YIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFIN 86 (576)
Q Consensus 8 ~~~~~~~~v~~~~P~~nG~lHiGH~~~-~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~ 86 (576)
.++.++++|+.+.||+|..+|+|++-+ .+.+||++||.+.+| ++..|++|+|++|++++.+|.+.|++|+++|+
T Consensus 10 ~~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~-----~~~~yicGTDEYgtatetkaleeg~tP~elcd 84 (567)
T KOG1247|consen 10 APNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRG-----PNTLYICGTDEYGTATETKALEEGLTPQELCD 84 (567)
T ss_pred CCCccceeeecccceecccccccceeeEEeehhhhcccccCCC-----CceEEeccccccchhhHHHHHHccCCHHHHHH
Confidence 346678999999999999999999995 889999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCC
Q psy2393 87 NISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQ 166 (576)
Q Consensus 87 ~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~ 166 (576)
+|+..++..++.++|++|.|.+|+.+...+.+|.+|.+|+ ++|++-+....+.||..|+++|++++|+|+||.|+..++
T Consensus 85 Kyh~ihk~vy~Wf~IdfD~fgrtTT~~qT~i~Q~iF~kl~-~ng~~se~tv~qLyC~vc~~fladr~veg~cp~C~yd~A 163 (567)
T KOG1247|consen 85 KYHGIHKVVYDWFKIDFDEFGRTTTKTQTEICQDIFSKLY-DNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPFCGYDDA 163 (567)
T ss_pred hcchhHHHHHHhhcccccccCcccCcchhHHHHHHhhchh-hcCCcccceeeeEEehhhcccccchhhhccCCCCCCccc
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcC----CCCChhHHHHHHHHHhhcC
Q psy2393 167 YGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD----KRLQPEIVNKIKEWLEKDN 242 (576)
Q Consensus 167 ~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~l~~~~ 242 (576)
+|++|++||..+.+.++++|+|..|....+.+.+.+.|++| +++++.+.+| +++ ..|++++++..+.|++ .
T Consensus 164 RGDqcd~cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L--~kl~~~lee~-~~~~~~~~~WS~Na~~it~sWlk--~ 238 (567)
T KOG1247|consen 164 RGDQCDKCGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSL--DKLEPRLEEW-LRRTLVEGDWSQNAQNITRSWLK--D 238 (567)
T ss_pred cchhhhhhhhhcCHHHhcCcchheeccCCeeeeeeEEEEEh--HHhHHHHHHH-HHhccccCCCccchHHHHHHHHH--c
Confidence 99999999999999999999999999999999999999999 9999999999 654 2699999999999999 9
Q ss_pred CCCCcccccCCCCCCeecCC--CCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccC-CCcceEEEeeec
Q psy2393 243 KFNDWDISRDAPYFGIKIPN--TLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISS-PNTEQYHFIGKD 319 (576)
Q Consensus 243 ~~~dw~isR~~~~WG~~iP~--~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~-~~~~~i~~~G~D 319 (576)
|+++.||+|+- .||+|+|- .+++|+||||||++||++.+..+. ++|.+||.+ ..+++++|+|+|
T Consensus 239 gl~pRCiTRDL-kWGtpVPle~fk~KVfYVWFDA~IGYlsit~~yt------------~ew~kWwknpE~v~LyqFmgKD 305 (567)
T KOG1247|consen 239 GLKPRCITRDL-KWGTPVPLEKFKDKVFYVWFDAPIGYLSITKNYT------------DEWEKWWKNPENVELYQFMGKD 305 (567)
T ss_pred ccccccccccc-ccCCCcChhhhcccEEEEEEcCcceEEEeehhhh------------HHHHHHhcCHhhhhHHHHhccC
Confidence 99999999998 99999995 689999999999999999887665 578889943 346789999999
Q ss_pred CcchhHhHHHHHHHhcCCCCC--cEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccc
Q psy2393 320 IFYFHILFWPAILKFSGRKLP--NNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFN 397 (576)
Q Consensus 320 ~~~fh~~~~~a~l~~~~~~~p--~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs 397 (576)
++.||++++|+++.+.+...+ +++.+.+.++.+..|+|||+|..|...++-+.|++++..||||++.+|+.. |..||
T Consensus 306 NVpFHtviFP~s~lgt~en~t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEss-Ds~Fs 384 (567)
T KOG1247|consen 306 NVPFHTVIFPCSQLGTEENYTVVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESS-DSAFS 384 (567)
T ss_pred CCcceeeecchhhhcCCCCchhheeechhhhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCccc-CCcCc
Confidence 999999999999988876655 688888999999999999999999999999999999999999999999874 78999
Q ss_pred hhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCC-cccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy2393 398 SQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNM-KWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNF 476 (576)
Q Consensus 398 ~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~ 476 (576)
|+++....|++++++++|+++|+.+++...+++.+|+ .+..++..+++.++.+..+..++||.-..+++++.++++...
T Consensus 385 w~df~~k~nseLl~NLGNFvNR~l~fv~~~~~g~Vp~~~~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is~~ 464 (567)
T KOG1247|consen 385 WDDFVLKVNSELLNNLGNFVNRVLKFVAAKYNGVVPEMELTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEISRR 464 (567)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhCCcccceeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999989998887 333334899999999999999999999999999999999999
Q ss_pred HHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCcccc-cccccCCCCCcccCCC
Q psy2393 477 INIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQW-INIFTPLTQNHKINKY 555 (576)
Q Consensus 477 ~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~~~~-~~~~~~~~~g~~~~~~ 555 (576)
.|.|++.++.++...+ ++.++..+..+.++++..++.+|+||||.++.+|.++|+++.... +.....+++||+|+++
T Consensus 465 GNqylQ~~~~~k~~~~--~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnlp~~~~~~~~~~~l~~gH~ig~~ 542 (567)
T KOG1247|consen 465 GNQYLQENTDNKLYEE--SRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNLPETLFPDRFICRLLAGHRIGTP 542 (567)
T ss_pred hhHHHhcccccchhhh--cccccceeeehhhHHHHHHHHHhccccccchHHHHHHhCCccccCCCccceeecCcCccCCc
Confidence 9999999987655433 345666777788899999999999999999999999999986443 2333457889999999
Q ss_pred CCCccCCChHHHHHHHhc
Q psy2393 556 RHLMTRVDKNIVDNLLKN 573 (576)
Q Consensus 556 ~~lf~r~d~~~~~~~~~~ 573 (576)
+|||+|||.++|+++.+.
T Consensus 543 ~pLFq~l~~~qiee~r~k 560 (567)
T KOG1247|consen 543 SPLFQKLDEDQIEEWRAK 560 (567)
T ss_pred cHHHHhcCHHHHHHHHHh
Confidence 999999999999998764
No 10
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=3.2e-90 Score=716.61 Aligned_cols=388 Identities=36% Similarity=0.709 Sum_probs=342.4
Q ss_pred EEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy2393 14 IFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRK 93 (576)
Q Consensus 14 ~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 93 (576)
|+||+|+|||||+|||||+.+++.+|+++||+|++| ++|.+++|+|+||+||+.+|+++|++|+++|+++++.|+
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G-----~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~ 75 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRG-----HDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFK 75 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT------EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcc-----cceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCcccc
Q psy2393 94 KYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCEC 173 (576)
Q Consensus 94 ~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~ 173 (576)
+.|+++||++|.|++|+++.|.+.++++|.+|+ ++|+||+++..+|||+.|++|+++++|+|+||.|+...++|+.|+.
T Consensus 76 ~~~~~~~I~~D~F~rTt~~~h~~~v~~i~~~L~-~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~ 154 (391)
T PF09334_consen 76 ELLEALNISYDRFIRTTDDRHKEFVQEIFKRLY-DNGYIYKREYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCEN 154 (391)
T ss_dssp HHHHHTT---SEEEETTSHHHHHHHHHHHHHHH-HTTSEEEEEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETT
T ss_pred HHHHHcCCCCcceeCCCCHHHHHHHHHHHHHHH-hcCceeecccceeEecCcCcccccceeeccccCcCccccCCCcccC
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC--CCChhHHHHHHHHHhhcCCCCCccccc
Q psy2393 174 CSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK--RLQPEIVNKIKEWLEKDNKFNDWDISR 251 (576)
Q Consensus 174 cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~dw~isR 251 (576)
||..+++++|++|+|..||++++++.+++|||+| +++++++.++ +++. .+|+..++.+.+|++ ++++||+|||
T Consensus 155 cG~~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L--~~~~~~L~~~-l~~~~~~~~~~~~~~~~~~l~--~~L~d~~Is~ 229 (391)
T PF09334_consen 155 CGRPLEPEELINPVCKICGSPPEVREEENYFFKL--SKFRDQLREW-LESNPDFPPPRVREIVRNWLK--EGLPDLSISR 229 (391)
T ss_dssp TSSBEECCCSECEEETTTS-B-EEEEEEEEEE-G--GGGHHHHHHH-HHHSTTSSHHHHHHHHHHHHH--T----EE-EC
T ss_pred CCCCcccccccCCccccccccCccccceEEEEeh--HHhHHHHHHH-HhcCCCCCChhHHHHHHHHhh--cccCceeeec
Confidence 9999999999999999999999999999999999 9999999999 6554 377778899999999 8999999999
Q ss_pred CCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccc-cCCCcceEEEeeecCcchhHhHHHH
Q psy2393 252 DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFI-SSPNTEQYHFIGKDIFYFHILFWPA 330 (576)
Q Consensus 252 ~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w-~~~~~~~i~~~G~D~~~fh~~~~~a 330 (576)
.. .||||+|+++++++|||||++++|++.++...+..+.. ..+..+| .+++++++||+|+|+++||+++|||
T Consensus 230 ~~-~WGI~vP~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~------~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa 302 (391)
T PF09334_consen 230 PL-DWGIPVPGDPGQVIYVWFDALIGYLTATGYLAEKRGDP------EEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPA 302 (391)
T ss_dssp TT-SSSEEETTEEEEEE-HHHHHHTHHHHTTTTTHHHTTTS------HHHHHHHCST--SEEEEEEEGGGHHHHHTHHHH
T ss_pred CC-CCcceeeccCCceEEEcchHHHHHHHHhcccccccccc------chhhhhccccCCceEEEEEccchhHHHHHHhHH
Confidence 88 99999999999999999999999999998776544432 6788999 5678899999999999999999999
Q ss_pred HHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHH
Q psy2393 331 ILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLI 410 (576)
Q Consensus 331 ~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~ 410 (576)
|+++.++++|+.+++|||++++|+|||||+||+|+|+|+++. ||+|++||||++.+|.. +|.+|+++.+.+.+|+++.
T Consensus 303 ~l~a~~~~lP~~i~~~~~~~~~g~K~SkS~gn~i~~~~~~~~-~~~D~~R~~L~~~~~~~-~d~~F~~~~~~~~~n~~L~ 380 (391)
T PF09334_consen 303 MLLAAGLPLPRRIVVHGFLTLDGEKMSKSRGNVIWPDDLLEE-YGADALRYYLAREGPEG-QDSDFSWEDFIERVNNELA 380 (391)
T ss_dssp HHHHCTB---SEEEEE--EEETTCCEETTTTESSBHHHHHHH-H-HHHHHHHHHHHSSTT-S-EEE-HHHHHHHHHHCCC
T ss_pred HHhcccCCCCCEEEeeeeEEECCeeccccCCcccCHHHHHHh-CChHHHHHHHHHhcCCC-CCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 99999999999987765 7789999999999999999
Q ss_pred HHHHHHHHHHH
Q psy2393 411 GKYINIASRSS 421 (576)
Q Consensus 411 ~~~~n~~~R~~ 421 (576)
++++|+++|+.
T Consensus 381 ~~~gNl~~R~~ 391 (391)
T PF09334_consen 381 NTLGNLVNRVL 391 (391)
T ss_dssp CCHHHHHHHHH
T ss_pred HhhhhHHhccC
Confidence 99999999973
No 11
>KOG0436|consensus
Probab=100.00 E-value=6e-87 Score=649.69 Aligned_cols=508 Identities=26% Similarity=0.450 Sum_probs=440.8
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 89 (576)
.++++++++|..|||..+||||+++.+++|+++|+++.+| ..|.|.+|+|+||++|+..|+.+|.+|.++|++..
T Consensus 37 ~~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg-----~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s 111 (578)
T KOG0436|consen 37 EGETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKG-----KKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRIS 111 (578)
T ss_pred CCceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcC-----CceEeecCCCccchhhhhhHhhcCCChHHHHhhhh
Confidence 4569999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceec-cCCCCCCCCCCC
Q psy2393 90 SNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKG-ECPICNAKDQYG 168 (576)
Q Consensus 90 ~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~-~~p~c~~~~~~g 168 (576)
++|.+.++.+||.++.|+||++|.|+..|++++..+. ++|+||.+.+.+|||.+|++|+|++.|.. -||-
T Consensus 112 ~~f~qL~k~~gi~yt~FIRTTdpkH~a~Vqefw~~~~-knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~-------- 182 (578)
T KOG0436|consen 112 QSFRQLWKDAGIAYTKFIRTTDPKHEAIVQEFWARVF-KNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPP-------- 182 (578)
T ss_pred HHHHHHHHHhCcchhheeecCCchHHHHHHHHHHHHH-hCCceeeecccceEeccccccCCHHHHhcCCCCC--------
Confidence 9999999999999999999999999999999999999 99999999999999999999999988753 2331
Q ss_pred CccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC--CCChh-HHHHHHHHHhhcCCCC
Q psy2393 169 DFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK--RLQPE-IVNKIKEWLEKDNKFN 245 (576)
Q Consensus 169 ~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~--~~~~~-~~~~~~~~l~~~~~~~ 245 (576)
| -+++..+|++|+++.+..|||.| ++++..+.++ ++++ ++.|. ..+.+.+||+ .|++
T Consensus 183 ------g---------k~vsmEsg~~vv~~kE~NY~FrL--Skfqk~l~d~-lrkNP~fvqPs~~~~qVl~~lk--tglp 242 (578)
T KOG0436|consen 183 ------G---------KVVSMESGNPVVWRKEDNYFFRL--SKFQKPLEDH-LRKNPRFVQPSYFHNQVLSWLK--TGLP 242 (578)
T ss_pred ------C---------ceeeeccCCceeEecccceeeeH--HhhhhHHHHH-HhcCCCccCchHHHHHHHHHHH--cCCC
Confidence 1 14566789999999999999999 9999999999 6654 55454 6799999999 9999
Q ss_pred Cccccc--CCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcch
Q psy2393 246 DWDISR--DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYF 323 (576)
Q Consensus 246 dw~isR--~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~f 323 (576)
|.+||| ++..||||+|+++.+++||||||+++|++.+++..++.. ....+..+||+. +|++|+|++.|
T Consensus 243 DlSISRpsarl~WGIPvP~ddsQtIYVWfDAL~nYiSvig~~~~~~N------~k~~ls~~wPat----~HvIGKDIlrF 312 (578)
T KOG0436|consen 243 DLSISRPSARLDWGIPVPGDDSQTIYVWFDALLNYISVIGYPNKQQN------LKTALSFGWPAT----LHVIGKDILRF 312 (578)
T ss_pred cccccChhhhcccCCCCCCCCcceEEEeHHHHhhHHHhhcCCchhcc------ccceeecCCCce----eeehhhhhhhh
Confidence 999999 556899999999999999999999999999876433221 125677789875 99999999999
Q ss_pred hHhHHHHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhh
Q psy2393 324 HILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFIS 403 (576)
Q Consensus 324 h~~~~~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~ 403 (576)
|+++|||+|+++|+++|+.+++|||++.+|.|||||+||+++|.+++++ ||+|++||||+..+-.+ .|-||+.+++..
T Consensus 313 HavYWPafLmaAGlplP~~I~vHghwt~ngmKMsKSLGNvvdP~~l~~k-ygvD~vRyflLr~~~l~-~Dgdy~eekl~k 390 (578)
T KOG0436|consen 313 HAVYWPAFLMAAGLPLPKMIFVHGHWTKNGMKMSKSLGNVVDPFELVQK-YGVDAVRYFLLREGELG-NDGDYSEEKLIK 390 (578)
T ss_pred hhhhhHHHHHhcCCCCccEEEEeeeeeecceecchhhccccCHHHHHHH-hCccceeeEeeeccccC-CCCCccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 99999999999975444 677999999999
Q ss_pred hhhHHHHHHHHHHHHHHHH--HHHHHcCCC--CCCc-ccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy2393 404 CVNSDLIGKYINIASRSSS--FIEKYFKGY--LNMK-WVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFIN 478 (576)
Q Consensus 404 ~~~~~~~~~~~n~~~R~~~--~~~~~~~~~--~~~~-~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n 478 (576)
..|.+++++++|+++|+++ +..++.... .+.. ...++..|...+.++++.+.+.++++.+.++++.+....+..|
T Consensus 391 ~~n~~La~~lG~LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~~n 470 (578)
T KOG0436|consen 391 IVNAHLANTLGNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNAGN 470 (578)
T ss_pred HHHHHHHHHHHHHHHHHhhcccChhccccccccCCcchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHHhhh
Confidence 9999999999999999987 444331111 1111 1112267899999999999999999999999999999999999
Q ss_pred HhhhhcCccccccCc-ccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCc-----ccccccccCCC-----
Q psy2393 479 IFFDQNKPWKLAKNN-IYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP-----LQWINIFTPLT----- 547 (576)
Q Consensus 479 ~y~~~~k~~~~~~~~-~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~-----~~~~~~~~~~~----- 547 (576)
.|++..+||.+..+. .+...+..++..++++|++++++|.|++|.++.+++.+||.+. ..|+.++.+..
T Consensus 471 tlvq~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgvsk~qrsl~~~~~vf~~~~ygk~s 550 (578)
T KOG0436|consen 471 TLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGVSKDQRSLITWSPVFAPIEYGKES 550 (578)
T ss_pred hhhhhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCCChhhcccccchhccCchhccCCC
Confidence 999999999986543 2344567788889999999999999999999999999999974 24666554433
Q ss_pred --CCcccCCC-CCCccCCC
Q psy2393 548 --QNHKINKY-RHLMTRVD 563 (576)
Q Consensus 548 --~g~~~~~~-~~lf~r~d 563 (576)
.|+.+++. .+++.|++
T Consensus 551 ~~kgr~v~~kt~~~~~~~~ 569 (578)
T KOG0436|consen 551 DEKGRKVGKKTGKAKVKVV 569 (578)
T ss_pred CcccccCCcccccceeeee
Confidence 35666654 34566654
No 12
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=1.1e-81 Score=717.72 Aligned_cols=488 Identities=21% Similarity=0.274 Sum_probs=408.1
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH----cCCCH----
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK----AGMTP---- 81 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~----~g~~~---- 81 (576)
++++|+|+.||||+||.|||||+++++++|+++||+||+| ++|++++|||+||+||+.++++ .|.++
T Consensus 31 ~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G-----~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~ 105 (861)
T TIGR00422 31 NKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKG-----YNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLG 105 (861)
T ss_pred CCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcC-----CcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCC
Confidence 4578999999999999999999999999999999999999 9999999999999999998876 35555
Q ss_pred --------HHHHHHHHHHHHHHHhhcCcccc--ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccc
Q psy2393 82 --------KEFINNISSNRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPD 151 (576)
Q Consensus 82 --------~~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~ 151 (576)
.++++++...++++|++||+++| +.+.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|+|++
T Consensus 106 ~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~-~~GlIy~~~~~v~wcp~~~t~lsd 184 (861)
T TIGR00422 106 REEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLY-EKGLIYRGEYLVNWDPKLNTAISD 184 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHH-HCCCeeecCcccccCCCCCCcchH
Confidence 46789999999999999998665 6678999999999999999999 999999999999999999999999
Q ss_pred cceec---------------------------------------------------------------------------
Q psy2393 152 RYIKG--------------------------------------------------------------------------- 156 (576)
Q Consensus 152 ~~v~~--------------------------------------------------------------------------- 156 (576)
+||++
T Consensus 185 ~Ev~~~~~~~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~~~av~V~P~~~ry~~l~g~~~~~P~~~~~ipii~~~~V~~~ 264 (861)
T TIGR00422 185 IEVEYKEVKGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPEDERYKHLIGKKVILPLTGRKIPIIADEYVDME 264 (861)
T ss_pred hHhhcccccceEEEEEEEecCCCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceeeecCCCCcc
Confidence 87521
Q ss_pred -------cCCCCCCC----------------CCCCCccccCCCcC------------------------CCCccCCCccc
Q psy2393 157 -------ECPICNAK----------------DQYGDFCECCSSIY------------------------TPTKLINPYSI 189 (576)
Q Consensus 157 -------~~p~c~~~----------------~~~g~~c~~cg~~~------------------------~~~~l~~p~~~ 189 (576)
.||.|+.. +..|..|++||.+- .+.+...|+||
T Consensus 265 ~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~ 344 (861)
T TIGR00422 265 FGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCW 344 (861)
T ss_pred cCCCceEecCCCChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeC
Confidence 13443321 23466777777651 11233579999
Q ss_pred CCCCccEEeeecceeEecCchhhHHHHHHhhhcC--C-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCC---C
Q psy2393 190 LSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD--K-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPN---T 263 (576)
Q Consensus 190 ~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~--~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~---~ 263 (576)
|||++++++.++|||+++ +++++.+.++ ++. . ++|+..++.+.+|++ +++|||||||+ +||+|||. +
T Consensus 345 R~g~~ve~~~~~qWFi~~--~~~~~~~~~~-~~~~~i~~~P~~~~~~~~~wl~---~l~DW~ISRq~-~WG~piP~w~~~ 417 (861)
T TIGR00422 345 RSGTVVEPLLSKQWFVKV--EKLADKALEA-AEEGEIKFVPKRMEKRYLNWLR---NIKDWCISRQL-IWGHRIPVWYCK 417 (861)
T ss_pred CCCCEEEEEecCcceEec--HHHHHHHHHH-hhcCCeEEEChHHHHHHHHHHh---ccccceeeeec-ccCCcceEEEEC
Confidence 999999999999999999 9999999999 653 3 578889999999998 79999999999 99999996 2
Q ss_pred C----------------------------CcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEE
Q psy2393 264 L----------------------------EKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHF 315 (576)
Q Consensus 264 ~----------------------------~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~ 315 (576)
. ..|+++||||.++|++..+. ... ..+|+.|||.+ +++
T Consensus 418 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdS~l~~~s~~g~-p~~---------~~~~~~~~P~d----~~~ 483 (861)
T TIGR00422 418 ECGEVYVAKEEPLPDDKTNTGPSVELEQDTDVLDTWFSSSLWPFSTLGW-PDE---------TKDLKKFYPTD----LLV 483 (861)
T ss_pred CCCcEEeccchHHhhhhhccCCcccEEECCCcccceeccchHHHHHhCC-CCC---------hHHHhhcCCcc----eee
Confidence 1 35778899999999886542 111 13577788765 999
Q ss_pred eeecCcchhHhHHHHHHHhcCCCCC-cEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCC
Q psy2393 316 IGKDIFYFHILFWPAILKFSGRKLP-NNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIED 393 (576)
Q Consensus 316 ~G~D~~~fh~~~~~a~l~~~~~~~p-~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d 393 (576)
+|+||++||...++++..++..+.| +.+++||||++ +|+|||||+||+|+|.+++++ ||+|++|||+++..+.+ .|
T Consensus 484 ~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~~-ygaDalR~~l~~~~~~~-~d 561 (861)
T TIGR00422 484 TGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIEK-YGADALRFTLASLVTPG-DD 561 (861)
T ss_pred cchhhhhHHHHHHHHHHHHhcCCCchheEEEeeEEECCCCCCCCcCCCCCCCHHHHHHH-hChHHHHHHHHhCCCCC-CC
Confidence 9999999999998877777655666 99999999998 999999999999999999999 99999999999875544 78
Q ss_pred cccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCC---ccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy2393 394 IDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNM---KWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYI 469 (576)
Q Consensus 394 ~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~---~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~ 469 (576)
++|+++.+... .+++++++|+. |......+... .++. ... .| +|++++++.+.+.+.++|++|+|+.|++.
T Consensus 562 ~~f~~~~~~~~--~~~~nkl~N~~-rf~~~~~~~~~-~~~~~~~~~~~~D-~wil~~l~~~~~~v~~~~e~~~f~~A~~~ 636 (861)
T TIGR00422 562 INFDWKRVESA--RNFLNKLWNAS-RFVLMNLSDDL-ELSGGEEKLSLAD-RWILSKLNRTIKEVRKALDKYRFAEAAKA 636 (861)
T ss_pred ceecHHHHHHH--HHHHHHHHHHH-HHHHhcccccc-ccccccccCCHHH-HHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 99999987765 55899999954 54443222211 1211 122 25 99999999999999999999999999999
Q ss_pred HHHHH--HHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 470 VIEQT--NFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 470 l~~~~--~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
|++|+ +++|+|++.+|||.+.++ ......+..++..+|..+++||+|||||+||+||+.|+.
T Consensus 637 l~~f~~~~~~n~Yie~~k~~~~~~~---~~~~~~~~~~l~~~l~~~~~lL~Pf~P~itEelw~~L~~ 700 (861)
T TIGR00422 637 LYEFIWNDFCDWYIELVKYRLYNGN---EAEKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKE 700 (861)
T ss_pred HHHHHHHHHHHHHHHHhHHHHcCCC---cHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhCcc
Confidence 99997 899999999999986543 123445677888999999999999999999999999985
No 13
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.6e-80 Score=708.95 Aligned_cols=486 Identities=18% Similarity=0.245 Sum_probs=392.8
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH-----cCCCH--
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK-----AGMTP-- 81 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~-----~g~~~-- 81 (576)
+++++|+|+.||||+||.|||||+++++++|+++||+||+| ++|+|++|||+||++++.++++ .|.++
T Consensus 45 ~~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G-----~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~ 119 (1052)
T PRK14900 45 RTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSG-----FNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHD 119 (1052)
T ss_pred CCCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcC-----CcccCCCCCCccchHHHHHHHHHhhhccCCChhh
Confidence 45678999999999999999999999999999999999999 9999999999999999987765 23333
Q ss_pred ----------HHHHHHHHHHHHHHHhhcCcc--ccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccc
Q psy2393 82 ----------KEFINNISSNRKKYLDGFYIK--FDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFL 149 (576)
Q Consensus 82 ----------~~~~~~~~~~~~~~l~~lgi~--~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l 149 (576)
.++++++.+.+.++|++||++ |++.+.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|+|
T Consensus 120 ~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~-~~Gliyr~~~~v~wcp~~~T~L 198 (1052)
T PRK14900 120 LGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLH-EEGLIYREKKLINWCPDCRTAL 198 (1052)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHH-HCCCEEeccceeccCCCCCCCc
Confidence 346789999999999999985 558888999999999999999999 9999999999999999999999
Q ss_pred cccceeccC--------------------------C----CCC----CC--------------------------C----
Q psy2393 150 PDRYIKGEC--------------------------P----ICN----AK--------------------------D---- 165 (576)
Q Consensus 150 ~~~~v~~~~--------------------------p----~c~----~~--------------------------~---- 165 (576)
++.||++.. | .|. .+ +
T Consensus 199 sd~Ev~~~e~~~~~~~~i~f~l~~~~~~l~vaTTrPeTl~~~~avaV~P~~~~y~~L~G~~~~~Pl~~~~ipIi~d~~~v 278 (1052)
T PRK14900 199 SDLEVEHEEAHQGELWSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPLDPRYMALHGKKVRHPITGRTFPIVADAILV 278 (1052)
T ss_pred cHHHhcccCCCCCeEEEEEEEecCCCcEEEEEECchhhhhcceeEEECCCcHHHHHhcCCEEECCCCCCeeEEEeccccc
Confidence 999997421 1 000 00 0
Q ss_pred --CCCCccc--------------------------cCCCcCCC-------------------------------CccCCC
Q psy2393 166 --QYGDFCE--------------------------CCSSIYTP-------------------------------TKLINP 186 (576)
Q Consensus 166 --~~g~~c~--------------------------~cg~~~~~-------------------------------~~l~~p 186 (576)
.+|..|. ..|++.+. -+...|
T Consensus 279 d~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~ 358 (1052)
T PRK14900 279 DPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLG 358 (1052)
T ss_pred CcCCCCCeEEecCCCChhHHHHHHHcCCCccceECCCcEEecCCcccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCc
Confidence 0121111 11221110 011259
Q ss_pred cccCCCCccEEeeecceeEecCchhhHHHHHHhhhcC--C-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCC
Q psy2393 187 YSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD--K-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNT 263 (576)
Q Consensus 187 ~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~--~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~ 263 (576)
+||||+++++++.++||||++ +.+++.+.++ +++ . ++|+..++.+.+||+ +++|||||||+ +||+|||..
T Consensus 359 ~c~R~~~~ie~~~s~qWFi~l--~~~k~~~~~~-v~~~~~~~~P~~~~~~~~~wl~---~l~DW~ISRqr-~WG~PIP~w 431 (1052)
T PRK14900 359 RCQRSATILEPLLSDQWYVRI--EPLARPAIEA-VEQGRTRFIPEQWTNTYMAWMR---NIHDWCISRQL-WWGHQIPAW 431 (1052)
T ss_pred eeCCCCceEEEEeccceeeeh--HHHHHHHHHH-HhcCCcEEEChHHHHHHHHHHh---cCccceEEeec-CCCceeCeE
Confidence 999999999999999999999 9999999999 754 3 578889999999998 89999999999 999999962
Q ss_pred ---------------------------CCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEe
Q psy2393 264 ---------------------------LEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFI 316 (576)
Q Consensus 264 ---------------------------~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~ 316 (576)
+.+++||||||.++|++..+ +... ..+|+.|||.+ ++++
T Consensus 432 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~g-~p~~---------~~~~~~~~P~d----~~~~ 497 (1052)
T PRK14900 432 YCPDGHVTVARETPEACSTCGKAELRQDEDVLDTWFSSGLWPFSTMG-WPEQ---------TDTLRTFYPTS----VMET 497 (1052)
T ss_pred EcCCCcEEecccccccccccCccceecCCceEEEEEcCChHHHHHHc-CCCc---------hHHHHhhCCch----hhcc
Confidence 24899999999999988764 2211 13577888754 9999
Q ss_pred eecCcchhHhHHHHHHHhcC----CCCC-cEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCC
Q psy2393 317 GKDIFYFHILFWPAILKFSG----RKLP-NNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNK 390 (576)
Q Consensus 317 G~D~~~fh~~~~~a~l~~~~----~~~p-~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~ 390 (576)
|+||++| |++.++.++ ...| +.+++||||++ +|+|||||+||+|+|.+++++ ||+|++||||++..+.+
T Consensus 498 G~Dii~~----W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe~-yGaDalR~~L~~~~~~g 572 (1052)
T PRK14900 498 GHDIIFF----WVARMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITEQ-YGADALRFTLAALTAQG 572 (1052)
T ss_pred cccHHhH----HHHHHHHHHHHhcCCCccceeEecccEECCCCCCccCCCCCCCCHHHHHHH-hCcHHHHHHHHhcCCCC
Confidence 9999976 455444433 2455 89999999999 999999999999999999999 99999999999875555
Q ss_pred CCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHc--CCCCCC--ccc-CChHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy2393 391 IEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYF--KGYLNM--KWV-KDNDTFLSKLRVVSSSIQKYYENRNFNK 465 (576)
Q Consensus 391 ~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~--~~~~~~--~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~ 465 (576)
.|++|+++.+... .+++++++|+ .|...+..+.+ ++..+. ... .| +|+++.+..+.+.+.++|++|+|+.
T Consensus 573 -~D~~fs~~~l~~~--~~f~nkl~N~-~R~~~~~~~~~~~~~~~~~~~~~~~~D-~wils~l~~~i~~v~~~~e~y~f~~ 647 (1052)
T PRK14900 573 -RDIKLAKERIEGY--RAFANKLWNA-SRFALMNLSGYQERGEDPARLARTPAD-RWILARLQRAVNETVEALEAFRFND 647 (1052)
T ss_pred -CCCcccHHHHHHH--HHHHHHHHHH-HHHHHHhhhccCcccccccccccCHHH-HHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 7899999987443 5699999995 57665433332 122221 122 25 9999999999999999999999999
Q ss_pred HHHHHHHHH--HHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 466 VLYIVIEQT--NFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 466 ~~~~l~~~~--~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
+++.|++|+ +++|+|++..+++.+..+ ......+..++..+|+.+++||+|||||+||+||+.|+.
T Consensus 648 A~~~i~~f~~~~~~n~Yie~~k~~l~~~~---~~~~~~~~~~L~~~L~~l~~LLaPfmP~~aEeiw~~L~~ 715 (1052)
T PRK14900 648 AANAVYAFVWHELCDWYIELAKEALASED---PEARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRA 715 (1052)
T ss_pred HHHHHHHHHHHhhhHHHHHhccHhhccCC---HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhcc
Confidence 999999997 799999999998765432 122344567788899999999999999999999999974
No 14
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.2e-80 Score=666.57 Aligned_cols=488 Identities=21% Similarity=0.306 Sum_probs=392.5
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc----CCCH------
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA----GMTP------ 81 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~----g~~~------ 81 (576)
++|.|..||||+||.||||||.++++.|+++||.||+| ++|+|++|+|++|++++.+++++ |.+.
T Consensus 33 ~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G-----~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe 107 (877)
T COG0525 33 PPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRG-----YNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGRE 107 (877)
T ss_pred CCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCC-----CeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHH
Confidence 56999999999999999999999999999999999999 99999999999999999988862 5543
Q ss_pred ------HHHHHHHHHHHHHHHhhcCcccc--ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccc
Q psy2393 82 ------KEFINNISSNRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRY 153 (576)
Q Consensus 82 ------~~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~ 153 (576)
.++.+++...|.++|++||+++| +.+.|+|+.+.+.|+++|.+|+ ++|+||+++..++|||.|+|+||+.|
T Consensus 108 ~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly-~~GlIYr~~~lVNWcP~~~TAiSd~E 186 (877)
T COG0525 108 EFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLY-EKGLIYRGERLVNWCPKCRTAISDIE 186 (877)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHH-HCCceeecCCcccCCCccccchhhhh
Confidence 35678889999999999999654 7888999999999999999999 99999999999999999999999999
Q ss_pred eecc------------------------------------------------------CCCCCCC----------CCCCC
Q psy2393 154 IKGE------------------------------------------------------CPICNAK----------DQYGD 169 (576)
Q Consensus 154 v~~~------------------------------------------------------~p~c~~~----------~~~g~ 169 (576)
|++. .|.++.. ..+|.
T Consensus 187 Ve~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk~v~lPl~~r~IpIiaD~~VD~eFGT 266 (877)
T COG0525 187 VEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPIIADEYVDPEFGT 266 (877)
T ss_pred hccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcCCEEecCCCCCeeeeecCcccCCcCCC
Confidence 9741 1222211 01222
Q ss_pred ---------------------------------ccccCC-CcCC------------------------CCccCCCcccCC
Q psy2393 170 ---------------------------------FCECCS-SIYT------------------------PTKLINPYSILS 191 (576)
Q Consensus 170 ---------------------------------~c~~cg-~~~~------------------------~~~l~~p~~~~~ 191 (576)
.-++|+ .+-. +-...-|+|+||
T Consensus 267 G~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~ 346 (877)
T COG0525 267 GAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERC 346 (877)
T ss_pred ceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccCccccCC
Confidence 122332 2200 001124899999
Q ss_pred CCccEEeeecceeEecCchhhHHHHHHhhhc--CC-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCC-----
Q psy2393 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAIH--DK-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNT----- 263 (576)
Q Consensus 192 ~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~--~~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~----- 263 (576)
|+++++..++|||+++ ..+++.+.+. .+ .. ++|+...+...+|++ +++|||||||+ +||++||..
T Consensus 347 g~~IEp~ls~QWfVk~--~~la~~~l~~-~~~g~i~f~P~~~~~~~~~W~~---~i~DWcISRQl-wwGh~IPvWy~~~~ 419 (877)
T COG0525 347 GTPIEPLLSKQWFVKV--LELAKKALEA-VKDGKIKFVPERMEKRYEDWME---NIRDWCISRQL-WWGHRIPVWYCKEC 419 (877)
T ss_pred CceeeeeecceeeEEh--HhhHHHHHHH-HhcCCceEecHHHHHHHHHHHh---hCcCceeeeee-ecCcccceEEecCC
Confidence 9999999999999999 8899998888 55 33 678889999999998 88999999999 999999951
Q ss_pred --------------------------CCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEee
Q psy2393 264 --------------------------LEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIG 317 (576)
Q Consensus 264 --------------------------~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G 317 (576)
+..|+++||++.++.++.++ |.++. .+++.|+|.+ +.+.|
T Consensus 420 g~v~v~~~~~~~~~~~~~~~~~~~~qd~DVLDTWFSS~LwPfstlg-Wp~~t---------~~l~~fyPt~----llvtG 485 (877)
T COG0525 420 GNVVVAEEEPEDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTLG-WPEET---------PDLKKFYPTD----LLVTG 485 (877)
T ss_pred CcEEeCCccccchhhhccCchhcccCCcchhhhhhhcccccccccC-CCCcc---------hHHHhcCCCc----ccccc
Confidence 12467789998888887765 22221 4566666654 88999
Q ss_pred ecCcchhHhHHHHHHHhcCCCCC-cEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcc
Q psy2393 318 KDIFYFHILFWPAILKFSGRKLP-NNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDID 395 (576)
Q Consensus 318 ~D~~~fh~~~~~a~l~~~~~~~p-~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~ 395 (576)
.|++|||...-..+.+.+..+.| +.++.||+|.+ +|+|||||+||||+|.+++++ ||+|||||++++.+..+ +|+.
T Consensus 486 ~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~-yGaDAlRf~la~~~~~G-~Di~ 563 (877)
T COG0525 486 HDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDK-YGADALRFTLASLASPG-RDIN 563 (877)
T ss_pred chhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHHH-hChHHHHHHHHhccCCC-cccC
Confidence 99999976443222233334455 89999999999 999999999999999999999 99999999999975555 7899
Q ss_pred cchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCC-Cc-ccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy2393 396 FNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLN-MK-WVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQ 473 (576)
Q Consensus 396 fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~-~~-~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~ 473 (576)
|+++++... .+|++++||+.+.+...+.+......+ .. ...| +|++++|++..+.+++++++|+|..|.+.|++|
T Consensus 564 ~~~~~~~~~--rnF~nKlWNa~Rfv~~~~~~~~~~~~~~~~~~~~d-rWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F 640 (877)
T COG0525 564 FDEKRVEGY--RNFLNKLWNATRFVLMNLDDLGPDDLDLLALSLAD-RWILSRLNETVKEVTEALDNYRFDEAARALYEF 640 (877)
T ss_pred cCHHHHHHH--HHHHHHHHhHHHHHHhcccccCcccccccccchHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999998776 679999999964443322111101111 11 1236 999999999999999999999999999999999
Q ss_pred H--HHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCC
Q psy2393 474 T--NFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNIS 535 (576)
Q Consensus 474 ~--~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~ 535 (576)
+ .+|++|++..|+..+.. + ....++.+++..+|..+++||+|||||++|+||+.|...
T Consensus 641 ~W~~fcD~YlEl~K~~l~~~-~---~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~ 700 (877)
T COG0525 641 IWNDFCDWYLELAKPRLYGG-E---EEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGT 700 (877)
T ss_pred hHHHHHHHHHHHhhhhhcCc-H---HHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCCC
Confidence 9 99999999999987765 1 122355677888999999999999999999999999874
No 15
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1e-79 Score=696.61 Aligned_cols=485 Identities=22% Similarity=0.287 Sum_probs=395.6
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH-cCCCHH------
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK-AGMTPK------ 82 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~-~g~~~~------ 82 (576)
++++|+|+.|||||||.|||||+++++++|+++||+||+| ++|.+++|||+||+||+.+|++ .|.++.
T Consensus 36 ~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G-----~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~ 110 (800)
T PRK13208 36 RKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRG-----YNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREE 110 (800)
T ss_pred CCCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCC-----CcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHH
Confidence 3578999999999999999999999999999999999999 9999999999999999999998 588766
Q ss_pred ------HHHHHHHHHHHHHHhhcCcccc--ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccce
Q psy2393 83 ------EFINNISSNRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYI 154 (576)
Q Consensus 83 ------~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v 154 (576)
++++++.+.++++|++||+++| ++++|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|+|++++|
T Consensus 111 f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~-~~Gliy~~~~~v~wcp~~~t~Lsd~ev 189 (800)
T PRK13208 111 FIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLY-KKGLIYRAEAPVLWCPRCETAIAQAEV 189 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHH-HCCCeeecCcccccCCCCCCccchhhh
Confidence 5999999999999999999666 8999999999999999999999 999999999999999999999999987
Q ss_pred ec------------------------cCC----CCCC----C--------------------------------------
Q psy2393 155 KG------------------------ECP----ICNA----K-------------------------------------- 164 (576)
Q Consensus 155 ~~------------------------~~p----~c~~----~-------------------------------------- 164 (576)
++ +|| .|.+ +
T Consensus 190 ~~~~~~~~~~~ikf~~~~~~~l~v~TtrPeTl~g~~ai~v~p~~~~~~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~ 269 (800)
T PRK13208 190 EYREREGKLNYIKFPVEDGEEIEIATTRPELLPACVAVVVHPDDERYKHLVGKTAIVPLFGVEVPILADPLVDPDFGTGA 269 (800)
T ss_pred ccccccceEEEEEEEecCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceEECCCccCCCCCcce
Confidence 42 344 1211 0
Q ss_pred ---CCCCCccc----------------cCCCcC-----------------------------CCCcc--CCCcccCCCCc
Q psy2393 165 ---DQYGDFCE----------------CCSSIY-----------------------------TPTKL--INPYSILSGTK 194 (576)
Q Consensus 165 ---~~~g~~c~----------------~cg~~~-----------------------------~~~~l--~~p~~~~~~~~ 194 (576)
..+++.|+ .+|++. ..+++ ..|+|||||++
T Consensus 270 V~~~p~hd~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~ 349 (800)
T PRK13208 270 VMICTFGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTP 349 (800)
T ss_pred EEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCE
Confidence 01222232 122221 11111 24999999999
Q ss_pred cEEeeecceeEecCchhhHHHHHHhhhcCC-CCChhHHHHHHHHHhhcCCCC-CcccccCCCCCCeecCC----C-----
Q psy2393 195 PIIKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKEWLEKDNKFN-DWDISRDAPYFGIKIPN----T----- 263 (576)
Q Consensus 195 ~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-dw~isR~~~~WG~~iP~----~----- 263 (576)
++++.++|||+++ +++++.+.++ +++. ++|+..++++.+||+ +++ |||||||+ +||+|||. .
T Consensus 350 v~~~~~~qwfl~~--~~~~~~~~~~-~~~~~~~P~~~~~~~~~~l~---~~~~DW~ISRqr-~WG~pIP~~~~~~~g~~~ 422 (800)
T PRK13208 350 LEILVTRQWFIKV--LDLKEELLER-GKEINWYPEHMRVRLENWIE---GLNWDWCISRQR-YFGTPIPVWYCKDCGHPI 422 (800)
T ss_pred EEEeccceeeEeC--HHHHHHHHHh-hcCcEEECHHHHHHHHHHHH---hcCCCceeeecc-ccCCcceEEEeCCCCCee
Confidence 9999999999999 9999999999 7666 578889999999999 666 99999999 99999994 0
Q ss_pred -------------------------------CCcEEEEEeecccchhhhcchhhhhCCCCCccccc-ccccccccCCCcc
Q psy2393 264 -------------------------------LEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNEL-RNFDEFISSPNTE 311 (576)
Q Consensus 264 -------------------------------~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~w~~~~~~ 311 (576)
+..++++|||+...+++..+. +.+ ..++.|||.+
T Consensus 423 ~~~~~~l~~~~~~d~~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~~~-----------~~~~~~~~~~~P~d--- 488 (800)
T PRK13208 423 LPDEEDLPVDPTKDEPPGYKCPQCGSPGFEGETDVMDTWATSSITPLIVTGW-----------ERDEDLFEKVFPMD--- 488 (800)
T ss_pred cCchhhhccCchhhccccccccccCCcCEEecCCEEEEEEeCCchHHHHhCC-----------CCChhhhhhcCCce---
Confidence 025788999988776654321 111 3567788764
Q ss_pred eEEEeeecCcchhHhHHHHHHHhcCCCCC-cEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCC
Q psy2393 312 QYHFIGKDIFYFHILFWPAILKFSGRKLP-NNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNN 389 (576)
Q Consensus 312 ~i~~~G~D~~~fh~~~~~a~l~~~~~~~p-~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~ 389 (576)
++++|+||+++|...+.++..++....| +.+++||||++ +|+|||||+||+|+|.+++++ ||+|++|||++.. +
T Consensus 489 -~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~-yg~D~lR~~l~~~--~ 564 (800)
T PRK13208 489 -LRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISGMVLDPDGKKMSKSKGNVVTPEELLEK-YGADAVRYWAASA--R 564 (800)
T ss_pred -EEEeecchhhhHHHHHHHHHHHhcCCCCcceEEEeeEEECCCCCCCCCCCCCCCCHHHHHHH-cCccHHHHHHhcC--C
Confidence 9999999999987776654444333334 89999999997 999999999999999999999 9999999999943 4
Q ss_pred CCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCC--Cccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy2393 390 KIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLN--MKWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKV 466 (576)
Q Consensus 390 ~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~--~~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~ 466 (576)
...|++|+.+.+.. +++++++++|+++++. .+.+ ....+ .... .| +|+++++..+.+.+.++|++|+|+.|
T Consensus 565 ~~~d~~fs~~~~~~--~~~~l~kl~N~~r~~~-~~~~--~~~~~~~~~~~~~D-~~il~~l~~~i~~v~~~~e~~~f~~A 638 (800)
T PRK13208 565 LGSDTPFDEKQVKI--GRRLLTKLWNASRFVL-HFSA--DPEPDKAEVLEPLD-RWILAKLAKVVEKATEALENYDFAKA 638 (800)
T ss_pred CCCCceecHHHHHH--HHHHHHHHHHHHHHHH-hccc--ccccCccccCCHHH-HHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 56899999998754 5778999999965443 2211 01111 1122 25 99999999999999999999999999
Q ss_pred HHHHHHHH--HHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcC
Q psy2393 467 LYIVIEQT--NFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLN 533 (576)
Q Consensus 467 ~~~l~~~~--~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~ 533 (576)
++.|++|+ .++|.|++.+|+|.+.++.. .....++.++.++++.++++|+|||||+||+||+.|+
T Consensus 639 ~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~--~~~~~~~~~l~~~l~~l~~LLaPf~P~iaEelw~~L~ 705 (800)
T PRK13208 639 LEEIESFFWHVFCDDYLELVKSRAYGEDEE--EEQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWLY 705 (800)
T ss_pred HHHHHHHHHHHhhHHHHHHhhHHhcCCCCc--HHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhCC
Confidence 99999998 47999999999987654321 1244566788899999999999999999999999998
No 16
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.6e-79 Score=699.20 Aligned_cols=486 Identities=20% Similarity=0.280 Sum_probs=390.1
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH----cCCCHHH--
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK----AGMTPKE-- 83 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~----~g~~~~~-- 83 (576)
.+++|+|+.||||+||.|||||+++++++|+++||+||+| ++|+|++|||+||++++.++++ .|.++.+
T Consensus 34 ~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G-----~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~ 108 (874)
T PRK05729 34 SKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQG-----YNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLG 108 (874)
T ss_pred CCCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCC-----CcccCCCCCCccchhhHHHHHHHHHhcCCChHHCC
Confidence 3556999999999999999999999999999999999999 9999999999999998877654 3766554
Q ss_pred ----------HHHHHHHHHHHHHhhcCccc--cccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccc
Q psy2393 84 ----------FINNISSNRKKYLDGFYIKF--DNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPD 151 (576)
Q Consensus 84 ----------~~~~~~~~~~~~l~~lgi~~--d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~ 151 (576)
+++++.+.++++|++||+++ ++.+.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|+|++
T Consensus 109 re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~-~~GlIyr~~~~v~wcp~~~talsd 187 (874)
T PRK05729 109 REKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLY-EKGLIYRGKRLVNWDPKLQTALSD 187 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHH-HCCCEeecCcccccCCCCCCcchh
Confidence 58999999999999999855 57788999999999999999999 999999999999999999999999
Q ss_pred cceec------------------------------------------------------cCCCCCCC----------CCC
Q psy2393 152 RYIKG------------------------------------------------------ECPICNAK----------DQY 167 (576)
Q Consensus 152 ~~v~~------------------------------------------------------~~p~c~~~----------~~~ 167 (576)
+||++ .||.|+.. ..+
T Consensus 188 ~EV~~~~~~~~~~~i~f~~~~~~~~l~vaTtrPeTl~~~~avaV~P~d~ry~~l~g~~~~~P~~~~~ipii~~~~V~~~~ 267 (874)
T PRK05729 188 LEVEYKEVKGKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKHLIGKTVILPLVGREIPIIADEYVDPEF 267 (874)
T ss_pred hhcccccccceEEEEEEEecCCCcEEEEEeCCcchhhcCeeEeECCCccHHHHhcCCEEECCCCCCeeeEecCccCCCCC
Confidence 99973 14444431 112
Q ss_pred ---------------------------------CCccccCCCcCC------------------------CCccCCCcccC
Q psy2393 168 ---------------------------------GDFCECCSSIYT------------------------PTKLINPYSIL 190 (576)
Q Consensus 168 ---------------------------------g~~c~~cg~~~~------------------------~~~l~~p~~~~ 190 (576)
|..+++||.+-. +.+...|+|||
T Consensus 268 GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R 347 (874)
T PRK05729 268 GTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDR 347 (874)
T ss_pred CCcceEecCCCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCC
Confidence 333444544310 01223699999
Q ss_pred CCCccEEeeecceeEecCchhhHHHHHHhhhcC--C-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCC--C-C
Q psy2393 191 SGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD--K-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPN--T-L 264 (576)
Q Consensus 191 ~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~--~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~--~-~ 264 (576)
||++++++.++|||+++ +++++.+.++ +++ . ++|+..++.+.+|++ +++|||||||+ +||+|||. . +
T Consensus 348 ~~~~i~~~~~~QWFi~~--~~~~~~~~~~-v~~~~i~~~P~~~~~~~~~wl~---~l~DWcISRq~-~WG~pIP~~~~~~ 420 (874)
T PRK05729 348 SGVVIEPYLSDQWFVKM--KPLAKPALEA-VENGEIKFVPERWEKTYFHWME---NIQDWCISRQL-WWGHRIPAWYDED 420 (874)
T ss_pred CCceEEEEecCcceEeh--HHHHHHHHHH-HhcCCcEEEChHHHHHHHHHHh---cCccceeeeec-ccCCcccEEEeCC
Confidence 99999999999999999 9999999999 643 2 579989999999998 79999999999 99999994 1 1
Q ss_pred ---------------------CcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcch
Q psy2393 265 ---------------------EKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYF 323 (576)
Q Consensus 265 ---------------------~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~f 323 (576)
..++++||++.+++++.++ +... ..+++.|||.+ ++++|+||++|
T Consensus 421 ~~~~v~~~~~~~~~~~~~~~~~DvlDtWfsS~l~~~~~lg-wp~~---------~~~~~~~~P~d----~~~~G~Dii~~ 486 (874)
T PRK05729 421 GEVYVGREEPEAREKALLTQDEDVLDTWFSSALWPFSTLG-WPEK---------TEDLKRFYPTS----VLVTGFDIIFF 486 (874)
T ss_pred CcEEeCCcccccccccCeEeCCceecceecCCccHHHHhC-CCCC---------cHHHHhcCCcc----cccccccccch
Confidence 2345667777777766543 1111 14577788765 99999999987
Q ss_pred hHhHHHHHHHhcCCCCC-cEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhH
Q psy2393 324 HILFWPAILKFSGRKLP-NNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSF 401 (576)
Q Consensus 324 h~~~~~a~l~~~~~~~p-~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~ 401 (576)
|.....++........| +.++.||+|++ +|+|||||+||+|+|.|++++ ||+|++|||+++.++. .+|++|+++.+
T Consensus 487 W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~~-yGaDalR~~ll~~~~~-~~Di~fs~~~l 564 (874)
T PRK05729 487 WVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDK-YGADALRFTLAALASP-GRDIRFDEERV 564 (874)
T ss_pred HHHHHHHHHHHhcCCCchhheEEeeeEECCCCCCcccCCCCCCCHHHHHHH-hChHHHHHHHHhCCCC-CCCceeCHHHH
Confidence 53332211112223456 89999999997 999999999999999999999 9999999999987544 47899999987
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH-HHHcCCCCCC--cccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--H
Q psy2393 402 ISCVNSDLIGKYINIASRSSSFI-EKYFKGYLNM--KWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT--N 475 (576)
Q Consensus 402 ~~~~~~~~~~~~~n~~~R~~~~~-~~~~~~~~~~--~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~--~ 475 (576)
... .+++++++|+. |...+. .+...+.++. .+.. | +|+++++..+.+.+.++|++|+|+.|++.|++|+ .
T Consensus 565 ~~~--~~~~nkl~N~~-Rf~~~~~~~~~~~~~~~~~~~~~~D-~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~ 640 (874)
T PRK05729 565 EGY--RNFANKLWNAS-RFVLMNLEGADVGELPDPEELSLAD-RWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNE 640 (874)
T ss_pred HHH--HHHHHHHHHHH-HHHHHhcccCCcccccccccCCHHH-HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 655 45899999975 544332 2211122221 1222 5 9999999999999999999999999999999998 7
Q ss_pred HHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 476 FINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 476 ~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
++|+|++.+|+|.+ .+ . .+.+..++..+++.+++||+|||||+||+||+.|+.
T Consensus 641 ~~~~Yle~~k~~l~-~~--~---~~~~~~~l~~~l~~~~~lL~Pf~PfitEelw~~l~~ 693 (874)
T PRK05729 641 FCDWYLELAKPVLQ-EA--A---KRATRATLAYVLEQILRLLHPFMPFITEELWQKLAP 693 (874)
T ss_pred HHHHHHHHHHHHhh-hh--H---HHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhccc
Confidence 99999999999965 21 1 345667888999999999999999999999999984
No 17
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.7e-80 Score=673.83 Aligned_cols=490 Identities=23% Similarity=0.308 Sum_probs=384.8
Q ss_pred cCCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH-cCC-------
Q psy2393 8 FKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK-AGM------- 79 (576)
Q Consensus 8 ~~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~-~g~------- 79 (576)
++++++|++++||||+||.+|||||.|.|++|++.||..|+| |+|.+++||||||+|||.++++ .|.
T Consensus 45 ~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G-----~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~ 119 (933)
T COG0060 45 NKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQG-----YDVPYVPGWDCHGLPIELKVEKKLGIGKKDIES 119 (933)
T ss_pred hCCCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccC-----CcCCCCCCCcCCCchHHHHHHHHhCCCcchhhh
Confidence 578899999999999999999999999999999999999999 9999999999999999988886 342
Q ss_pred --------CHHHHHHHHHHHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccc
Q psy2393 80 --------TPKEFINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFL 149 (576)
Q Consensus 80 --------~~~~~~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l 149 (576)
.|++++..+.+.+++++++||+ +|++.|.|+++.|.+.+.++|.+++ +||++|++..+++|||.|+|.|
T Consensus 120 ~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~-~kGllyrg~Kpv~wsp~c~TaL 198 (933)
T COG0060 120 FGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELY-EKGLLYRGYKPVPWSPRCETAL 198 (933)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHH-HCCCeecCCeeeeecCCCCcch
Confidence 3556778889999999999999 8899999999999999999999999 9999999999999999999999
Q ss_pred cccceec-----------------------------cCCCC---------------------------------------
Q psy2393 150 PDRYIKG-----------------------------ECPIC--------------------------------------- 161 (576)
Q Consensus 150 ~~~~v~~-----------------------------~~p~c--------------------------------------- 161 (576)
+++||++ |+|+.
T Consensus 199 AeaEvey~d~~dpSIyV~F~v~~~~~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~ 278 (933)
T COG0060 199 AEAEVEYGDVKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKA 278 (933)
T ss_pred hhhhhcccccCCceEEEEEEeccCCCCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEECCEEEEEhHHHHHHHHHHc
Confidence 9999985 12210
Q ss_pred CCC-----------------------C---C--------------CCC-------------------------ccc--cC
Q psy2393 162 NAK-----------------------D---Q--------------YGD-------------------------FCE--CC 174 (576)
Q Consensus 162 ~~~-----------------------~---~--------------~g~-------------------------~c~--~c 174 (576)
+.+ . . .|. .|. .-
T Consensus 279 ~~~~~~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~ 358 (933)
T COG0060 279 GVEDYEVLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDN 358 (933)
T ss_pred CCcceEEeEEeehhhhCCCEeeCCcccccccceeeEEecCeEecCCCccceecCCCCCHHHHHHHHHcCCcCCccccCCC
Confidence 000 0 0 000 111 12
Q ss_pred CCcCCC------------Cc-------------------cCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcC
Q psy2393 175 SSIYTP------------TK-------------------LINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD 223 (576)
Q Consensus 175 g~~~~~------------~~-------------------l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~ 223 (576)
|++.+. .+ -.+|+||||++|+++|.++|||+++ +++++.+++. +++
T Consensus 359 G~yt~~~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v--~~~r~~~l~~-i~~ 435 (933)
T COG0060 359 GRYTEEAPKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSV--DKLRDKMLKE-INK 435 (933)
T ss_pred ccccccchhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchheeEH--HHHHHHHHHH-Hhc
Confidence 222211 00 1269999999999999999999999 9999999966 556
Q ss_pred C-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCC----C----------------------------------
Q psy2393 224 K-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNT----L---------------------------------- 264 (576)
Q Consensus 224 ~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~----~---------------------------------- 264 (576)
+ ++|+...+++.+|++ +.+|||||||| +||+|||.. .
T Consensus 436 v~w~P~~~~~R~~~mve---~r~DW~ISRQR-~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w~~~~idel 511 (933)
T COG0060 436 VNWVPDWGKNRFGNMVE---NRPDWCISRQR-YWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDIDEL 511 (933)
T ss_pred ceEEChhHHHHHHHHHc---CCCcceeeccc-cCCCceeEEEECCCCCeeccHHHHHHHHHHHhhhcCchhhhccchHhh
Confidence 5 568889999999998 99999999999 999999951 0
Q ss_pred --------------CcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCc--chhHhHH
Q psy2393 265 --------------EKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIF--YFHILFW 328 (576)
Q Consensus 265 --------------~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~--~fh~~~~ 328 (576)
..+++||||+...+.+..... . ...+...|.| ++..|.||. |||+.+-
T Consensus 512 ~~~~~~~g~~~~rv~DvlDVWFDSGs~~~a~~~~~---~--------~~~~~~~~aD-----~~lEGsDQ~RGWF~Ssl~ 575 (933)
T COG0060 512 LPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLHPR---E--------NLKFPALFAD-----FYLEGSDQTRGWFYSSLL 575 (933)
T ss_pred cCCCCCCcceeEecCcceEEEEcCCCCcccccCCc---c--------cccCccccCc-----EEEEeccccchhHHHHHH
Confidence 134556666654443322100 0 0111212211 788899998 6666553
Q ss_pred HHHHHhcCCCCC-cEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhh
Q psy2393 329 PAILKFSGRKLP-NNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVN 406 (576)
Q Consensus 329 ~a~l~~~~~~~p-~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~ 406 (576)
.+ .++....| +.+++|||+++ +|+|||||+||+|+|.+++++ ||+|+||+|++++ ++..|+.||++.+ ...
T Consensus 576 ~s--~a~~~~aPYk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~~-yGADiLRLwv~ss--d~~~dl~~s~~il-~~~- 648 (933)
T COG0060 576 TS--TALFGRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDK-YGADILRLWVASS--DYWEDLRFSDEIL-KQV- 648 (933)
T ss_pred HH--HHHcCCchHHHHhhcccEECCCCCCccccCCCcCCHHHHHHh-hCchheeeeeeec--CchhccccCHHHH-HHH-
Confidence 32 22222445 89999999999 999999999999999999999 9999999999998 5778999999974 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC--CC-CcccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHh
Q psy2393 407 SDLIGKYINIASRSSSFIEKYFKGY--LN-MKWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT--NFINIF 480 (576)
Q Consensus 407 ~~~~~~~~n~~~R~~~~~~~~~~~~--~~-~~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~--~~~n~y 480 (576)
++.+++++|+++.+...+....... ++ +.+.. | +|++++++.+.+.+.++|++|+|+++++.|++|+ +++|+|
T Consensus 649 ~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~D-rwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Y 727 (933)
T COG0060 649 REVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELD-RWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWY 727 (933)
T ss_pred HHHHHHHHHHHHHHHHhccCCCccccccchhhcchhH-HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHHH
Confidence 6679999999866555433211111 11 12222 6 9999999999999999999999999999999998 899999
Q ss_pred hhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCC
Q psy2393 481 FDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNIS 535 (576)
Q Consensus 481 ~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~ 535 (576)
++..|++.+.+...+.. .+++..+|..+|..+.++||||+||+||+||+.|...
T Consensus 728 ld~~kdr~y~~~~~s~~-rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~ 781 (933)
T COG0060 728 LDIIKDRLYTEAADSPD-RRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGE 781 (933)
T ss_pred HHHHHHHhhhcCCCCHH-HHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhCccC
Confidence 99999988866322222 2233456668999999999999999999999999765
No 18
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.2e-78 Score=689.76 Aligned_cols=488 Identities=20% Similarity=0.313 Sum_probs=393.5
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH----cCCCH----
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK----AGMTP---- 81 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~----~g~~~---- 81 (576)
++++|+|+.||||+||.|||||+++++++|+++||+||+| ++|+|++|||+||+|++.++++ .|.++
T Consensus 86 ~~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G-----~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~ 160 (958)
T PLN02943 86 GGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKG-----RPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLG 160 (958)
T ss_pred CCCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcC-----CeeecCCCCCcccchhHHHHHHHHHHcCCChhhCC
Confidence 4567999999999999999999999999999999999999 9999999999999999987765 36543
Q ss_pred --------HHHHHHHHHHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccc
Q psy2393 82 --------KEFINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPD 151 (576)
Q Consensus 82 --------~~~~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~ 151 (576)
.++++++.+.++++|++||+ +|++.+.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|+|++
T Consensus 161 re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~-~~Gliyr~~~~V~wcp~~~Tals~ 239 (958)
T PLN02943 161 RDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLH-EKGLIYQGSYMVNWSPNLQTAVSD 239 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHH-HCCCEEecCceeccCCCCCCCcCH
Confidence 34668899999999999999 5568999999999999999999999 999999999999999999999999
Q ss_pred cceecc--------------------------C-----------------------------CCC-CCC----------C
Q psy2393 152 RYIKGE--------------------------C-----------------------------PIC-NAK----------D 165 (576)
Q Consensus 152 ~~v~~~--------------------------~-----------------------------p~c-~~~----------~ 165 (576)
.||++. . |.. +.. .
T Consensus 240 ~Evey~e~~~~~~~i~f~l~~~~~~~l~vaTTrPeTl~~~~avavnP~d~ry~~l~g~~~~~Pl~~~~~ipii~~~~V~~ 319 (958)
T PLN02943 240 LEVEYSEEPGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVPIIADRYVDK 319 (958)
T ss_pred HHhhcccccccEEEEEEEEcCCCCCEEEEEeCChhhhhcceEEEECCCCHHHHHHcCCEEECCCcCCCeeeEEecCcccC
Confidence 999741 0 110 100 0
Q ss_pred CCCC---------------------------------ccccCCCcC--------------------CCCccCCCcccCCC
Q psy2393 166 QYGD---------------------------------FCECCSSIY--------------------TPTKLINPYSILSG 192 (576)
Q Consensus 166 ~~g~---------------------------------~c~~cg~~~--------------------~~~~l~~p~~~~~~ 192 (576)
.+|. .-+.+|.+. ++.+...|+|||||
T Consensus 320 ~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~ 399 (958)
T PLN02943 320 DFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGG 399 (958)
T ss_pred CCCCceEEeCCCCChHHHHHHHHcCCCceeeeCCCceeeccCCccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCC
Confidence 0111 111223220 01123469999999
Q ss_pred CccEEeeecceeEecCchhhHHHHHHhhhcC--C-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCC------C
Q psy2393 193 TKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD--K-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPN------T 263 (576)
Q Consensus 193 ~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~--~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~------~ 263 (576)
++++++.++|||+++ +.+++.+.++ ++. . ++|+..++.+.+|++ +++|||||||+ +||+|||. +
T Consensus 400 ~~Ie~~~~~QWFi~~--~~l~~~~l~~-v~~~~i~~~P~~~~~~~~~wl~---~l~DWcISRQr-~WG~pIP~w~~~~~~ 472 (958)
T PLN02943 400 EVIEPLVSKQWFVTM--EPLAEKALKA-VENGELTIIPERFEKIYNHWLS---NIKDWCISRQL-WWGHRIPVWYIVGKD 472 (958)
T ss_pred cEeEEEeccceeEEH--HHHHHHHHHH-HhcCCcEEEChHHHHHHHHHHh---cCccceEEEec-CCCCccCceeccccC
Confidence 999999999999999 9999999999 653 3 578889999999998 99999999999 99999995 1
Q ss_pred ------------------------------CCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceE
Q psy2393 264 ------------------------------LEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQY 313 (576)
Q Consensus 264 ------------------------------~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i 313 (576)
+.+|+|||||+.++|++.++ +.... ..+|+.|||.+ +
T Consensus 473 ~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~lg-wp~~~--------~~~~~~~yP~d----l 539 (958)
T PLN02943 473 CEEDYIVARSAEEALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLG-WPDVS--------AEDFKKFYPTT----V 539 (958)
T ss_pred CCceEEecCcHHHHHHHhhhhcCCchheeecCceEEEEEcCccchHHhcC-CCccC--------hHHHhccCCCe----E
Confidence 24789999999999988765 22111 14677788764 9
Q ss_pred EEeeecCcchhHhHHHHHHHhcCC----CCC-cEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhC
Q psy2393 314 HFIGKDIFYFHILFWPAILKFSGR----KLP-NNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKL 387 (576)
Q Consensus 314 ~~~G~D~~~fh~~~~~a~l~~~~~----~~p-~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~ 387 (576)
++.|+||++| |++.+..++. ..| +++++||++++ +|+|||||+||+|+|.+++++ ||+|++|||+++.
T Consensus 540 ~~~G~Dii~f----W~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~-ygaDalR~~l~~~- 613 (958)
T PLN02943 540 LETGHDILFF----WVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKE-FGTDALRFTLALG- 613 (958)
T ss_pred EEEeehHHHH----HHHHHHHhhhhhcCCCChheEEEeccEECCCCCcccCcCCCCCCHHHHHHh-cCChHHHHHHHhC-
Confidence 9999999976 5554333332 445 78999999997 999999999999999999999 9999999999986
Q ss_pred CCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHH-------------HcCCCCC-CcccCChHHHHHHHHHHHHH
Q psy2393 388 NNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEK-------------YFKGYLN-MKWVKDNDTFLSKLRVVSSS 453 (576)
Q Consensus 388 ~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~-------------~~~~~~~-~~~~~d~~~l~~~l~~~~~~ 453 (576)
...+|++|+++.+.. +++++++++|+...+.+.+.. .+++..+ ..+...++|++++++.+.+.
T Consensus 614 -~~~~d~~fs~~~l~~--~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~wilskl~~~i~~ 690 (958)
T PLN02943 614 -TAGQDLNLSTERLTS--NKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEESLLSLPLPECWVVSKLHELIDS 690 (958)
T ss_pred -CCCCCccccHHHHHH--HHHHHHHHHHHHHHHHhccccccccccccccccccCCccccccccCHHHHHHHHHHHHHHHH
Confidence 346899999998865 478899999987655443311 1111111 01222239999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHH--HHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Q psy2393 454 IQKYYENRNFNKVLYIVIEQT--NFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETF 531 (576)
Q Consensus 454 v~~a~~~~~~~~~~~~l~~~~--~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~ 531 (576)
+.++|++|+|+.|++.+++|+ +++|+|++.+|||.+.++. ......+..++..++..+++||+|||||+||+||+.
T Consensus 691 v~~~~e~y~f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~--~~~~~~a~~vL~~vl~~ll~LL~PfmPfitEELwq~ 768 (958)
T PLN02943 691 VTTSYDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGD--NSALSRAQAVLLYVFENILKLLHPFMPFVTEELWQA 768 (958)
T ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhccHhhccCCc--hHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 999999999999999999995 9999999999998765432 122345567778899999999999999999999999
Q ss_pred cCC
Q psy2393 532 LNI 534 (576)
Q Consensus 532 L~~ 534 (576)
|+.
T Consensus 769 L~~ 771 (958)
T PLN02943 769 LPY 771 (958)
T ss_pred cCC
Confidence 974
No 19
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.5e-78 Score=690.08 Aligned_cols=491 Identities=19% Similarity=0.252 Sum_probs=385.8
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc------CCCHH
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA------GMTPK 82 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~------g~~~~ 82 (576)
+++++|+|++||||+||.|||||+++++++|+++||+||+| ++|.|++|||+||+||+.+|++. +.++.
T Consensus 46 ~~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G-----~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~ 120 (912)
T PRK05743 46 KGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSG-----FDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAA 120 (912)
T ss_pred CCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccC-----CcccCCCCcCCCccHhHHHHHHHcCCccccCCHH
Confidence 46678999999999999999999999999999999999999 99999999999999999999885 56666
Q ss_pred H-------HHHHHHHHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccc
Q psy2393 83 E-------FINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRY 153 (576)
Q Consensus 83 ~-------~~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~ 153 (576)
+ +++++.+.++++|++||+ +||+.+.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|+|+++|
T Consensus 121 ~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~-~~Gliy~~~~~v~w~p~~~TaLad~E 199 (912)
T PRK05743 121 EFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMA-KKGYLYKGLKPVYWCPDCGSALAEAE 199 (912)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHH-HCCCEEecceeEecCCCcCCCchhhH
Confidence 4 788899999999999999 7889999999999999999999999 99999999999999999999999999
Q ss_pred eecc---CC-------CCC------------------------------CC-CC--------------------------
Q psy2393 154 IKGE---CP-------ICN------------------------------AK-DQ-------------------------- 166 (576)
Q Consensus 154 v~~~---~p-------~c~------------------------------~~-~~-------------------------- 166 (576)
|++. +| ... .+ ..
T Consensus 200 vey~~~~s~~~yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~ 279 (912)
T PRK05743 200 VEYHDKTSPSIYVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVLERFG 279 (912)
T ss_pred hhcccccCceEEEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhC
Confidence 9741 10 000 00 00
Q ss_pred ----------------------------------------CCCc------------------------cc--cCCCcCCC
Q psy2393 167 ----------------------------------------YGDF------------------------CE--CCSSIYTP 180 (576)
Q Consensus 167 ----------------------------------------~g~~------------------------c~--~cg~~~~~ 180 (576)
+|.. |. ..|++...
T Consensus 280 ~~~~~~~~~~~G~~l~g~~~~~Pl~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~ 359 (912)
T PRK05743 280 WEDYEVLATFKGKELEGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEE 359 (912)
T ss_pred CcceEEEEEechHhhcCCEEECCCCCCeeeEeCCCccCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecC
Confidence 0000 00 01111100
Q ss_pred -C------------------------------ccCCCcccCCCCccEEeeecceeEecCchh--hHHHHHHhhhcCC-CC
Q psy2393 181 -T------------------------------KLINPYSILSGTKPIIKSSKHFFFKLSDKR--CIDFLRKWAIHDK-RL 226 (576)
Q Consensus 181 -~------------------------------~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~--~~~~l~~~~~~~~-~~ 226 (576)
. ....|+|||||++++++.++|||+++ ++ +++.+.+. +++. ++
T Consensus 360 ~~~~~Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~--~~~~~k~~~l~~-~~~v~~~ 436 (912)
T PRK05743 360 APLFAGLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISM--DKKGLREQALKA-IEKVKWI 436 (912)
T ss_pred CcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeC--ChHHHHHHHHHH-HcccEEE
Confidence 0 00259999999999999999999999 65 99999999 7776 57
Q ss_pred ChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCC----CCCc------------------EEEEEeecccchhhhcch
Q psy2393 227 QPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPN----TLEK------------------YFYVWLDAPIGYLASLKN 284 (576)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~----~~~~------------------~~~vw~d~~~~~~~~~~~ 284 (576)
|+..++++.+|++ +++|||||||+ +||+|||. +.+. ..++|++....++..
T Consensus 437 P~~~~~r~~~~i~---~~~DWcISRQR-~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~--- 509 (912)
T PRK05743 437 PAWGKNRIESMVE---NRPDWCISRQR-TWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELDAKELLP--- 509 (912)
T ss_pred ChHHHHHHHHHHh---cCcCccccccc-eeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccccccCHHHhcC---
Confidence 8889999999998 79999999999 99999997 2222 235676655433321
Q ss_pred hhhhCCCCCccccccccc-------------------ccccCCCcceEEEeeecCcc--hhHhHHHHHHHhcCCCCCcEE
Q psy2393 285 FFEKGGPKKKYNELRNFD-------------------EFISSPNTEQYHFIGKDIFY--FHILFWPAILKFSGRKLPNNI 343 (576)
Q Consensus 285 ~~~~~g~~~~~~~~~~~~-------------------~~w~~~~~~~i~~~G~D~~~--fh~~~~~a~l~~~~~~~p~~~ 343 (576)
.++ ..|.++.+.- .+||.+ +|++|+||++ ||+.+|+++++ .|.++|+.+
T Consensus 510 ---~~~--~~~~~~~DvlDvWfdSg~s~~~~~~~~~~~~~P~D----l~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~v 579 (912)
T PRK05743 510 ---DEA--DEYEKETDILDVWFDSGSSHAAVLEQRPELGYPAD----LYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQV 579 (912)
T ss_pred ---Ccc--cCEEECCchhhhhhhhCCCHHHHhcCccccCCCce----EEEecccccchHHHHHHHHHHHh-cCCCcccee
Confidence 000 0122212222 244433 9999999995 77999998776 777778999
Q ss_pred eeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHH
Q psy2393 344 FVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSS 422 (576)
Q Consensus 344 ~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~ 422 (576)
++||||++ +|+|||||+||+|+|.+++++ ||+|++|||+++. +...|++|+.+.+... .+++++++|+++.+.+
T Consensus 580 l~HG~vld~~G~KMSKSlGNvIdP~~ii~~-yGaDalR~~ll~~--~~~~D~~~s~~~l~~~--~~~~~kl~N~~rf~~~ 654 (912)
T PRK05743 580 LTHGFTVDGKGRKMSKSLGNVIDPQDVIKK-YGADILRLWVAST--DYSGDVRISDEILKQV--AEAYRRIRNTLRFLLG 654 (912)
T ss_pred EEeeeEECCCCCCCCCCCCCcCCHHHHHHh-cChHHHHHHHHhc--CCCCCeeecHHHHHHH--HHHHHHHHHHHHHHHh
Confidence 99999998 999999999999999999999 9999999999974 4568999999877653 5568899998744433
Q ss_pred HHHHHcC---CCCCC-ccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHhhhhcCccccccCccc
Q psy2393 423 FIEKYFK---GYLNM-KWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT--NFINIFFDQNKPWKLAKNNIY 495 (576)
Q Consensus 423 ~~~~~~~---~~~~~-~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~--~~~n~y~~~~k~~~~~~~~~~ 495 (576)
.+.. +. +.++. .+. .| +|++++++.+.+.+.++|++|+|++|++.|++|+ .++|.|++..|+|.+......
T Consensus 655 nl~~-~~~~~~~~~~~~l~~~D-~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Yie~~K~rly~~~~~~ 732 (912)
T PRK05743 655 NLND-FDPAKDAVPYEELLELD-RWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLYTDAADS 732 (912)
T ss_pred CccC-CCcccccCCchhCCHHH-HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhceeeheeccHhhhcCCCCc
Confidence 2211 11 01111 122 25 9999999999999999999999999999999999 789999999999876542111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcC
Q psy2393 496 HEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLN 533 (576)
Q Consensus 496 ~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~ 533 (576)
.. .+.+..++..++..++++|+|||||+||+||+.|+
T Consensus 733 ~~-r~~~~~vL~~~l~~l~~lLaPi~P~~aEelw~~l~ 769 (912)
T PRK05743 733 LA-RRSAQTALYHILEALVRWLAPILSFTAEEIWQYLP 769 (912)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcc
Confidence 11 12233455678888999999999999999999996
No 20
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.8e-78 Score=689.44 Aligned_cols=494 Identities=19% Similarity=0.240 Sum_probs=389.1
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH-cCCC-------
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK-AGMT------- 80 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~-~g~~------- 80 (576)
+++++|+|++|||||||.|||||+++++++|+++||+||+| ++|.+++||||||+||+.++++ .|++
T Consensus 38 ~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G-----~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~ 112 (975)
T PRK06039 38 EGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKG-----YKVERRAGWDTHGLPVELEVEKELGISGKKDIEE 112 (975)
T ss_pred CCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCC-----CcccCcCCcCCCccHHHHHHHHHhCcccccchhh
Confidence 46678999999999999999999999999999999999999 9999999999999999999987 4654
Q ss_pred ---------HHHHHHHHHHHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccc
Q psy2393 81 ---------PKEFINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFL 149 (576)
Q Consensus 81 ---------~~~~~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l 149 (576)
|.+++.++.+.+++++++||+ +|++.|.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|.|
T Consensus 113 ~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~-~kGliyr~~~~v~wcp~~~T~L 191 (975)
T PRK06039 113 YGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLY-DKGLLYKGYRVVPYCPRCETPL 191 (975)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHH-HCCCEEecceeeeecCCCCCCc
Confidence 678999999999999999996 7789999999999999999999999 9999999999999999999999
Q ss_pred ccccee--cc--------------------------CC----CC----CCCCC---------------------------
Q psy2393 150 PDRYIK--GE--------------------------CP----IC----NAKDQ--------------------------- 166 (576)
Q Consensus 150 ~~~~v~--~~--------------------------~p----~c----~~~~~--------------------------- 166 (576)
+++||+ +. .| .| ..++.
T Consensus 192 s~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~~~~~~~~~~ 271 (975)
T PRK06039 192 SNHEVAQGYKDVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEKVLKEDY 271 (975)
T ss_pred cHHHHhhcccccCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECCCCceEEEecCCeEEEEhHHHHHHHhhccc
Confidence 999997 31 01 00 00000
Q ss_pred -----------------------------------------CCCc----cc----------------------cCCCcCC
Q psy2393 167 -----------------------------------------YGDF----CE----------------------CCSSIYT 179 (576)
Q Consensus 167 -----------------------------------------~g~~----c~----------------------~cg~~~~ 179 (576)
+|.. |+ ..|++.+
T Consensus 272 ~~~~~~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~id~~G~~~~ 351 (975)
T PRK06039 272 EVVETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTE 351 (975)
T ss_pred EEEeeecCccccCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCChHHHHHHHHcCCCccceeCCCceEcC
Confidence 0000 00 0111110
Q ss_pred C-C------------------------------ccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC-CCC
Q psy2393 180 P-T------------------------------KLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQ 227 (576)
Q Consensus 180 ~-~------------------------------~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~ 227 (576)
. . ....|+|||||++++++.++|||+++ +++++.+.++ +++. ++|
T Consensus 352 ~~~~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~~--~~~k~~ll~~-~~~i~~~P 428 (975)
T PRK06039 352 EVPDYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRV--TKIKDRMLEL-NQKINWYP 428 (975)
T ss_pred CCccccCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEec--HHHHHHHHHh-hCCeEEEC
Confidence 0 0 01259999999999999999999999 9999999999 7776 467
Q ss_pred hhHHH-HHHHHHhhcCCCCCcccccCCCCCCeecCC----CC--------------------------------------
Q psy2393 228 PEIVN-KIKEWLEKDNKFNDWDISRDAPYFGIKIPN----TL-------------------------------------- 264 (576)
Q Consensus 228 ~~~~~-~~~~~l~~~~~~~dw~isR~~~~WG~~iP~----~~-------------------------------------- 264 (576)
+..++ ++.+||+ +++|||||||+ +||+|||. ++
T Consensus 429 ~~~~~~~~~~wl~---~l~DW~ISRqr-~WG~PIPiw~~~~~g~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~~~~~~~ 504 (975)
T PRK06039 429 EHIKDGRFGKWLE---NARDWNISRNR-YWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPIDLHRPYVDEVTLPCP 504 (975)
T ss_pred cccchhhHHHHHh---cCccceeeecc-ccCCcceEEEecCCCeEEEeccHHHHHHHhCCCcchhhhcccccccccccCC
Confidence 77887 9999998 79999999999 99999995 11
Q ss_pred --------CcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHH-HHhc
Q psy2393 265 --------EKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAI-LKFS 335 (576)
Q Consensus 265 --------~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~-l~~~ 335 (576)
.+++++|||+...+++..+. .... ...|+.+||.+ +++.|+||++||-.....+ ....
T Consensus 505 ~~~~~~r~~dVlDvWFdSg~~p~a~~~~-p~~~--------~~~f~~~~Pad----~~~~G~Di~r~Wf~~l~~~~~~~~ 571 (975)
T PRK06039 505 DGGTMRRVPDVIDVWFDSGSMPYAQLHY-PFEN--------KEWFEKHFPAD----FIVEGIDQTRGWFYTLLALSTALF 571 (975)
T ss_pred CCcceEeccccccceeecCCccHHHhCC-cccC--------hhhhhccCCce----EEEechhhHhhHHHHHHHHHHHhc
Confidence 16789999998888776542 1100 13467788765 9999999997632111111 1123
Q ss_pred CCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHH
Q psy2393 336 GRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYI 414 (576)
Q Consensus 336 ~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~ 414 (576)
|.++++.+++||||++ +|+|||||+||+|+|.+++++ ||+|++|||+++..+. ..|++||++.+.+..++ ++++++
T Consensus 572 ~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~~-yGaDalR~~lls~~~~-~~D~~fs~~~~~~~~~~-~l~kl~ 648 (975)
T PRK06039 572 DRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDK-YGADALRWYLLSSSAP-WEDLRFSEDGVREVVRK-FLLTLW 648 (975)
T ss_pred CCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHHH-hChHHHHHHHHhCCCC-CCCceechhHHHHHHHH-HHHHHH
Confidence 4555699999999998 999999999999999999999 9999999999998553 47899999986666644 569999
Q ss_pred HHHHHHHHHHH-HHcC-C-C-CC-CcccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHhhhhcCcc
Q psy2393 415 NIASRSSSFIE-KYFK-G-Y-LN-MKWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT-NFINIFFDQNKPW 487 (576)
Q Consensus 415 n~~~R~~~~~~-~~~~-~-~-~~-~~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~-~~~n~y~~~~k~~ 487 (576)
|+++++..... ..+. . . .+ ..+.. | +|+++.+..+.+.+.++|++|+++.|++.|++|+ .++|+|++.+|+.
T Consensus 649 N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~D-~wils~l~~li~~v~~a~e~y~~~~A~~~l~~f~~~lsn~Yi~~~k~r 727 (975)
T PRK06039 649 NVYSFFVLYANLDGFDYPPAEDEVDSLNELD-RWILSRLNSLVKEVTEALDNYDITKAARAIRDFVDDLSNWYIRRSRRR 727 (975)
T ss_pred HHHHHHHHHhhhccCCccccccccccCCHHH-HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99877543221 0110 0 0 11 11222 5 9999999999999999999999999999999999 5679999988763
Q ss_pred ccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 488 KLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 488 ~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
.+.... .. ...++..++..+|+.++++|+|||||+||+||+.|+.
T Consensus 728 ~w~~~~-~~-~~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei~~~L~~ 772 (975)
T PRK06039 728 FWKEED-DP-DKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNLTR 772 (975)
T ss_pred hccCCC-cH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccc
Confidence 332221 11 1234556777899999999999999999999999984
No 21
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.3e-77 Score=689.91 Aligned_cols=491 Identities=18% Similarity=0.218 Sum_probs=389.5
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH-cCCC-------
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK-AGMT------- 80 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~-~g~~------- 80 (576)
+++++|++++||||+||.|||||+++++++|+++||+||+| |+|.|++||||||+||+.++++ .|++
T Consensus 35 ~~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G-----~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~ 109 (1159)
T PLN02882 35 EGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTG-----HHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLK 109 (1159)
T ss_pred CCCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCC-----CcccccCccCCCCcHHHHHHHHHcCCCCccchhh
Confidence 45678999999999999999999999999999999999999 9999999999999999999964 4643
Q ss_pred ---------HHHHHHHHHHHHHHHHhhcC--ccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccc
Q psy2393 81 ---------PKEFINNISSNRKKYLDGFY--IKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFL 149 (576)
Q Consensus 81 ---------~~~~~~~~~~~~~~~l~~lg--i~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l 149 (576)
|++++.+|.+.+++++++|| ++||+.|.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|.|
T Consensus 110 ~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~-~kGliyr~~~~v~wcp~~~TaL 188 (1159)
T PLN02882 110 MGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLF-EKGLVYKGFKVMPYSTACKTPL 188 (1159)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHH-HCCCEEecceeEeecCCCCCCc
Confidence 55688999999999999999 58899999999999999999999999 9999999999999999999999
Q ss_pred ccccee--c---------------------------cCC----CCC----CCC---------------------------
Q psy2393 150 PDRYIK--G---------------------------ECP----ICN----AKD--------------------------- 165 (576)
Q Consensus 150 ~~~~v~--~---------------------------~~p----~c~----~~~--------------------------- 165 (576)
++.|++ + |.| .|. .++
T Consensus 189 s~~E~~~~Yk~~~~~si~v~F~l~~~~~~~~l~iwTTtPwTLpsn~Al~VnP~~~Y~~v~~~~~~~~~i~a~~~~~~~~~ 268 (1159)
T PLN02882 189 SNFEAGLNYKDVSDPAVMVSFPIVGDPDNASFVAWTTTPWTLPSNLALCVNPNFTYVKVRNKYTGKVYIVAESRLSALPT 268 (1159)
T ss_pred chhhhhhhcccCCCcEEEEEEEecCCCCCcEEEEEeCCccccccCeEEEECCCCcEEEEEecCCCeEEEEhHHHHHHHHh
Confidence 987762 2 111 100 000
Q ss_pred -----------------------------------------------C------------CCC-----------------
Q psy2393 166 -----------------------------------------------Q------------YGD----------------- 169 (576)
Q Consensus 166 -----------------------------------------------~------------~g~----------------- 169 (576)
. .|.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~Vi~~~~V~~~~GTGiVh~aPahG~~Dy~v~ 348 (1159)
T PLN02882 269 AKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVADDYVTDDSGTGVVHCAPAFGEDDYRVC 348 (1159)
T ss_pred hhhcccccccccccccccEEEEEecchhhcCCEEECCccccccccCceEEEEccCccCCCCCcceeEecCCCChhHHHHH
Confidence 0 000
Q ss_pred ------------ccc--cCCCcCCC-----------------------------Ccc--CCCcccCCCCccEEeeeccee
Q psy2393 170 ------------FCE--CCSSIYTP-----------------------------TKL--INPYSILSGTKPIIKSSKHFF 204 (576)
Q Consensus 170 ------------~c~--~cg~~~~~-----------------------------~~l--~~p~~~~~~~~~~~~~~~~~f 204 (576)
.|. ..|++.+. +++ ..|+|||||+|++++.++|||
T Consensus 349 ~~~gl~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp~cwR~~tpli~~a~~qWF 428 (1159)
T PLN02882 349 LANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAAIKAKGRLVKSGSITHSYPFCWRSDTPLIYRAVPSWF 428 (1159)
T ss_pred HHcCCCccccCccceECCCceEccCCcccCCCCHHHhhHHHHHHHHHCCCccceeeeecCCCEeeCCCCEEEEEecceeE
Confidence 000 01111100 000 149999999999999999999
Q ss_pred EecCchhhHHHHHHhhhcCCCC-ChhH-HHHHHHHHhhcCCCCCcccccCCCCCCeecCC----CC--------------
Q psy2393 205 FKLSDKRCIDFLRKWAIHDKRL-QPEI-VNKIKEWLEKDNKFNDWDISRDAPYFGIKIPN----TL-------------- 264 (576)
Q Consensus 205 ~~l~~~~~~~~l~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~----~~-------------- 264 (576)
+++ +++++.+.+. .++..| |+.. .+++.+||+ +++|||||||| +||+|||. +.
T Consensus 429 i~~--~~~k~~~l~~-~~~i~w~P~~~~~~r~~~wl~---~~~DW~ISRqR-~WGtPIPvw~~~~~~~~~~~~s~~el~~ 501 (1159)
T PLN02882 429 VKV--EEIKDRLLEN-NKQTYWVPDYVKEKRFHNWLE---NARDWAVSRSR-FWGTPLPIWISDDGEEVVVIGSIAELEK 501 (1159)
T ss_pred EEc--HHHHHHHHHh-hCCcEEECCcchhhHHHHHHh---cCcccceeecc-ccCCccceEEeCCCCeEEecCcHHHHHH
Confidence 999 9999999998 777754 7777 489999998 79999999999 99999994 10
Q ss_pred -----------------------C----------cEEEEEeecccchhhhcchhhhhCCCCCcccc--cccccccccCCC
Q psy2393 265 -----------------------E----------KYFYVWLDAPIGYLASLKNFFEKGGPKKKYNE--LRNFDEFISSPN 309 (576)
Q Consensus 265 -----------------------~----------~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~w~~~~ 309 (576)
+ .++++|||+.....+..+ ||. .+.|..+||.+
T Consensus 502 ~~~~~~~dlh~~~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~~-----------~p~e~~~~f~~~~PaD- 569 (1159)
T PLN02882 502 LSGVKVTDLHRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIH-----------YPFENKELFEKNFPAD- 569 (1159)
T ss_pred HhCCchhhccccchhhhccccccCCchhceEecCceeeeeeccCccHHHHcC-----------CcccChhHhhccCCce-
Confidence 0 456788887766655432 221 13456667654
Q ss_pred cceEEEeeecCcchhHhHHHHHHHh---cCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHh
Q psy2393 310 TEQYHFIGKDIFYFHILFWPAILKF---SGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIAS 385 (576)
Q Consensus 310 ~~~i~~~G~D~~~fh~~~~~a~l~~---~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~ 385 (576)
+++.|+||+++| ++..++.+ .|.++|+++++||||++ +|+|||||+||+|+|.+++++ ||+|+||||+++
T Consensus 570 ---~i~eG~Dq~RgW--f~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~~-YGADaLR~~Ll~ 643 (1159)
T PLN02882 570 ---FVAEGLDQTRGW--FYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDK-YGADALRLYLIN 643 (1159)
T ss_pred ---EEEEecchhhhH--HHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHHH-hCcHHHHHHHHh
Confidence 999999999864 33333333 25677799999999999 899999999999999999999 999999999997
Q ss_pred hCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHH----HHcCCCCCCc---c----c-CChHHHHHHHHHHHHH
Q psy2393 386 KLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIE----KYFKGYLNMK---W----V-KDNDTFLSKLRVVSSS 453 (576)
Q Consensus 386 ~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~----~~~~~~~~~~---~----~-~d~~~l~~~l~~~~~~ 453 (576)
.......|++|+.+.+.+.. ++++.+++|++..+...+. +++++..|.. + . .| +|+++.+.++.+.
T Consensus 644 s~~~~~~d~~fs~~~v~~~~-~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D-~wIls~l~~li~~ 721 (1159)
T PLN02882 644 SPVVRAEPLRFKEEGVFGVV-KDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLD-RWINSATQSLVKF 721 (1159)
T ss_pred CCcccCcCcccCHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHH-HHHHHHHHHHHHH
Confidence 63333467899999877654 4457778887644433221 2222333321 1 1 25 9999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHH-HHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHc
Q psy2393 454 IQKYYENRNFNKVLYIVIEQTN-FINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFL 532 (576)
Q Consensus 454 v~~a~~~~~~~~~~~~l~~~~~-~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L 532 (576)
+.++|++|+++.|++.|++|+. ++|+|++.+|||.+.+++ ..+++++++++.++|+.++++|+|||||+||+||++|
T Consensus 722 v~~~me~y~f~~A~~~I~~Fv~~lsN~YIe~~Kprl~~~~~--~~~~~~al~tL~~vL~~l~~LLaPfmPf~aEeI~q~L 799 (1159)
T PLN02882 722 VREEMGAYRLYTVVPYLVKFIDNLTNIYVRFNRKRLKGRTG--EEDCRTALSTLYNVLLTSCKVMAPFTPFFTEVLYQNL 799 (1159)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHhHHHHHhCCHhhhCCCC--hHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHh
Confidence 9999999999999999999994 899999999999886542 2346677889999999999999999999999999999
Q ss_pred CC
Q psy2393 533 NI 534 (576)
Q Consensus 533 ~~ 534 (576)
+.
T Consensus 800 ~~ 801 (1159)
T PLN02882 800 RK 801 (1159)
T ss_pred cc
Confidence 74
No 22
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.1e-77 Score=678.14 Aligned_cols=486 Identities=20% Similarity=0.254 Sum_probs=376.9
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc----CCC----
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA----GMT---- 80 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~----g~~---- 80 (576)
+++++|+|++||||+||.|||||+++++++|+++||++|+| ++|.|++||||||+||+.++++. |.+
T Consensus 51 ~~~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G-----~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~ 125 (961)
T PRK13804 51 KGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLG-----FDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEV 125 (961)
T ss_pred CCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcC-----CcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhC
Confidence 46678999999999999999999999999999999999999 99999999999999999988764 332
Q ss_pred --------HHHHHHHHHHHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCcccc
Q psy2393 81 --------PKEFINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLP 150 (576)
Q Consensus 81 --------~~~~~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~ 150 (576)
+.++++++.+.++++|++||+ +|++.|.|+++.|...++++|.+|+ ++|+||++..+++|||.|+|+|+
T Consensus 126 ~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~-~kGliyr~~kpV~Wcp~~~TaLa 204 (961)
T PRK13804 126 PVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFA-AKGQLYRGSKPVMWSVVERTALA 204 (961)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHH-HCCCEEeCCcceecCCCCCCCcc
Confidence 345788889999999999999 5779999999999999999999999 99999999999999999999999
Q ss_pred ccceecc-----------------------C--------C----CC----CCCCC-C-----------------------
Q psy2393 151 DRYIKGE-----------------------C--------P----IC----NAKDQ-Y----------------------- 167 (576)
Q Consensus 151 ~~~v~~~-----------------------~--------p----~c----~~~~~-~----------------------- 167 (576)
++||++. + | .+ ..++. |
T Consensus 205 ~~Evey~~~~s~~~~v~F~~~~~~~~~~~~~~lviwTTtPwTl~an~aiav~p~~~Y~~v~~~~~~~~~~~~~~e~~iva 284 (961)
T PRK13804 205 EAEIEYHDIESDTIWVKFPVKDGKGILDSGTYVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAENDFWAKPGERLVVA 284 (961)
T ss_pred chhcccccccCceEEEEEEecCcccccCCCCeEEEEeCCchhhhhCeEEEECCCCceEEEEeccccccccccCCcEEEeH
Confidence 9988741 0 1 00 00000 0
Q ss_pred ----------------------------------------------------------CCcc----c-------------
Q psy2393 168 ----------------------------------------------------------GDFC----E------------- 172 (576)
Q Consensus 168 ----------------------------------------------------------g~~c----~------------- 172 (576)
|..| +
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~ 364 (961)
T PRK13804 285 DALAESVAKKAGVESFERLADVKGEDLEKIVCAHPLDGLDGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFNVWMKY 364 (961)
T ss_pred HHHHHHHHHHhCCCCcEEEEEEEhhhccCCEEECCCCCcccccceeEEEecCccCCCCCCceEEeCCCCCHHHHHHHHHc
Confidence 0000 0
Q ss_pred ----------cCCCcCCC-Cc--------------------------------------cCCCcccCCCCccEEeeecce
Q psy2393 173 ----------CCSSIYTP-TK--------------------------------------LINPYSILSGTKPIIKSSKHF 203 (576)
Q Consensus 173 ----------~cg~~~~~-~~--------------------------------------l~~p~~~~~~~~~~~~~~~~~ 203 (576)
..|++.+. .+ ...|+|||||+|++++.++||
T Consensus 365 ~l~~~~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pii~r~t~QW 444 (961)
T PRK13804 365 GRTEIPVTVDEDGFYTENAPGFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQW 444 (961)
T ss_pred CCCcccccCCCCeEEccCCCccccccccccCCcchhhhhHHHHHHHHhCCCcccccceecCCCccCCCCCeEEEeccccc
Confidence 00111000 00 025999999999999999999
Q ss_pred eEecCchh-------hHHHHHHhhhcCC-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCC---CC-------
Q psy2393 204 FFKLSDKR-------CIDFLRKWAIHDK-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNT---LE------- 265 (576)
Q Consensus 204 f~~l~~~~-------~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~---~~------- 265 (576)
|+++ +. +++.+++. +++. ++|+..++++.+|++ +++|||||||| +||+|||.. .+
T Consensus 445 Fi~~--~~~~~~~~~~k~~al~~-i~~v~~~P~~~~~r~~~~i~---~~~DWcISRQR-~WG~PIP~~~~~~~~~~~~~~ 517 (961)
T PRK13804 445 FISM--DKDLGDGTTLRSRALDA-IDKTRFVPAAGQNRLYNMIE---DRPDWVISRQR-AWGVPIPIFVAEDGEILMDEE 517 (961)
T ss_pred cEEc--CCcccchHHHHHHHHHH-HhccEEECHHHHHHHHHHHh---cCccceeeeec-cCCceeeEEEcCCCCEeccHH
Confidence 9999 66 99999998 7776 578889999999998 88999999999 999999961 11
Q ss_pred ----------------------------------------cEEEEEeecccchhhhcchhhhhCCCCCcccccccccccc
Q psy2393 266 ----------------------------------------KYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFI 305 (576)
Q Consensus 266 ----------------------------------------~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w 305 (576)
.+++||||+...+..... .. .++ .|
T Consensus 518 ~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~r~~DvlDvWFdSg~s~~~~~~----~~---------~~~--~~ 582 (961)
T PRK13804 518 VNARIADAFEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDILDVWFDSGSTHAFVLE----DR---------PDL--KW 582 (961)
T ss_pred HHHHHHHHHHhcCCccccccCHHHhcCcccCcccceEecCcceeeeecCCCCcccccc----CC---------ccc--CC
Confidence 123344444322211000 00 111 34
Q ss_pred cCCCcceEEEeeecCcc--hhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHH
Q psy2393 306 SSPNTEQYHFIGKDIFY--FHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYY 382 (576)
Q Consensus 306 ~~~~~~~i~~~G~D~~~--fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~ 382 (576)
|.+ +|++|+||++ ||+.+..+ +...|..+++.+++|||+++ +|+|||||+||+|+|.+++++ ||+|++|||
T Consensus 583 PaD----~~~eG~Di~rgWF~s~ll~s-~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~~-yGaD~lRl~ 656 (961)
T PRK13804 583 PAD----LYLEGSDQHRGWFNSSLLES-CGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIKQ-SGADILRLW 656 (961)
T ss_pred Cce----EEEEEcccccHHHHHHHHHH-HHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHHHHHh-cCHHHHHHH
Confidence 433 8999999995 77643222 11224455699999999999 999999999999999999999 999999999
Q ss_pred HHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCC--CC-Cccc-CChHHHHHHHHHHHHHHHHHH
Q psy2393 383 IASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGY--LN-MKWV-KDNDTFLSKLRVVSSSIQKYY 458 (576)
Q Consensus 383 l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~--~~-~~~~-~d~~~l~~~l~~~~~~v~~a~ 458 (576)
+++. +...|++||.+.+... .+++++++|+++++.+.+.++..+. ++ ..+. .| +|+++++..+.+.+.++|
T Consensus 657 lls~--~~~~D~~fs~~~l~~~--~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~~~~~~D-~wil~~l~~~~~~v~~~~ 731 (961)
T PRK13804 657 VASV--DYSDDQRIGKEILKQV--SETYRKLRNTLRWLLGNLAHFDPGEDVVAYADLPELE-RYMLHRLNELDGLVREAY 731 (961)
T ss_pred HHhC--CCCCCcccCHHHHHHH--HHHHHHHHHHHHHHHhccccCCcccccCChhhcCHHH-HHHHHHHHHHHHHHHHHH
Confidence 9975 4668999999977553 6678999999866655554322111 11 1222 25 999999999999999999
Q ss_pred HhhhHHHHHHHHHHHH--HHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 459 ENRNFNKVLYIVIEQT--NFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 459 ~~~~~~~~~~~l~~~~--~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
++|+|+++++.|++|+ .++|.|++..|+|.+........ .+.+..++..+|+.++++|+|||||+||+||++|+.
T Consensus 732 e~y~f~~a~~~l~~f~~~~lsn~Yle~~K~rl~~~~~~~~~-r~~~~~vL~~il~~l~~lLaPi~P~~aEeiw~~L~~ 808 (961)
T PRK13804 732 DAYDFKRIYKALVNFVNVDLSAFYFDIRKDALYCDAPSSLR-RRAAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRYP 808 (961)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCcHH-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhccc
Confidence 9999999999999998 67999999999998765322221 233445666789999999999999999999999983
No 23
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=2.2e-76 Score=673.19 Aligned_cols=483 Identities=20% Similarity=0.287 Sum_probs=376.4
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc-------CCCHH
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA-------GMTPK 82 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~-------g~~~~ 82 (576)
.+++|+|++||||+||.|||||+++++++|+++||+||+| ++|.|++|||+||+||+.++++. +.++.
T Consensus 30 ~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G-----~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~ 104 (974)
T PLN02843 30 NGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQG-----KKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPI 104 (974)
T ss_pred CCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcC-----CccccCCccCCCCcHHHHHHHHHhchhhhccCCHH
Confidence 4567999999999999999999999999999999999999 99999999999999999998542 23444
Q ss_pred -------HHHHHHHHHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccc
Q psy2393 83 -------EFINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRY 153 (576)
Q Consensus 83 -------~~~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~ 153 (576)
++++++.+.++++|++||+ +||+.|.|+++.|...++++|.+|+ ++|+||++..+++|||.|+|.|+++|
T Consensus 105 ~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~-~~GlIyr~~kpV~Wcp~~~Talae~E 183 (974)
T PLN02843 105 KLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMF-LNGYIYRGRKPVHWSPSSRTALAEAE 183 (974)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHH-HCCCEEecceeeeecCCCCCcchHhH
Confidence 4577888889999999999 8889999999999999999999999 99999999999999999999999999
Q ss_pred eeccC----C-------CCC----------C--------------------------CC-C-------------------
Q psy2393 154 IKGEC----P-------ICN----------A--------------------------KD-Q------------------- 166 (576)
Q Consensus 154 v~~~~----p-------~c~----------~--------------------------~~-~------------------- 166 (576)
|++.- | .-. . ++ .
T Consensus 184 vey~e~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwTTtPwTlpan~AiaVnP~~~Y~~v~~~~~~~d~r~~~~~ 263 (974)
T PLN02843 184 LEYPEGHVSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVNDKLQYSVVEVQSFSEDESTSGGN 263 (974)
T ss_pred hcccCCccCceEEEEEEecCCccccccccccccccceEEEEeCcchhhccCcEEEECCCCceEEEEeccccccccccccc
Confidence 87520 0 000 0 00 0
Q ss_pred ------------------------------------------------------------------------CCCcc---
Q psy2393 167 ------------------------------------------------------------------------YGDFC--- 171 (576)
Q Consensus 167 ------------------------------------------------------------------------~g~~c--- 171 (576)
.|..|
T Consensus 264 ~~~~~~~~~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~pii~~~~~V~~~~GTG~Vh~ 343 (974)
T PLN02843 264 KKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIHPLYNRESPVVIGGDYITTESGTGLVHT 343 (974)
T ss_pred cccccccccccccCceEEeHHHHHHHHHHhhCCceEEEeeechHHcCCCEEECCCCCCceeEEecCCccCCCCCCCeEEe
Confidence 00000
Q ss_pred -----------------------ccCCCcC-------------CCCc-------------------cCCCcccCCCCccE
Q psy2393 172 -----------------------ECCSSIY-------------TPTK-------------------LINPYSILSGTKPI 196 (576)
Q Consensus 172 -----------------------~~cg~~~-------------~~~~-------------------l~~p~~~~~~~~~~ 196 (576)
+..|++. +..+ ...|+||||++|++
T Consensus 344 aPaHg~~Dy~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~Ii~~L~~~g~l~~~e~~~H~yp~cwR~~~pvi 423 (974)
T PLN02843 344 APGHGQEDYITGLKYGLPLLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKPTI 423 (974)
T ss_pred CCCCCHHHHHHHHHcCCCcccccCCCceEccCCcccCCcEehhcchHHHHHHHHHCCCeeeeeeecCCCCccCCCCCeEE
Confidence 0011111 0100 12499999999999
Q ss_pred EeeecceeEecCchhhHHHHHHhhhcCC-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCC----CC------
Q psy2393 197 IKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNT----LE------ 265 (576)
Q Consensus 197 ~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~----~~------ 265 (576)
+|.++|||+++ +.+++.+.+. +++. ++|+..++++.+|++ +++|||||||+ +||+|||.. .+
T Consensus 424 ~r~t~QWFi~~--~~~k~~al~~-~~~v~~~P~~~~~r~~~~i~---~~~DWcISRQr-~WG~pIP~~~~~~~~~~~~~~ 496 (974)
T PLN02843 424 FRATEQWFASV--EGFRQAALDA-IDKVKWIPAQGENRIRAMVS---GRSDWCISRQR-TWGVPIPVFYHVETKEPLMNE 496 (974)
T ss_pred EEecCceeEeC--HHHHHHHHHH-HhccEEEChHHHHHHHHHHh---cCcceeeeecc-ccccEEEEEEEcCCCCEeech
Confidence 99999999999 9999999999 7776 678889999999998 89999999999 999999941 11
Q ss_pred ------------------------------------------cEEEEEeecccchhhhcchhhhhCCCCCcccccccccc
Q psy2393 266 ------------------------------------------KYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDE 303 (576)
Q Consensus 266 ------------------------------------------~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 303 (576)
.+++||||+.+.+....+ .....
T Consensus 497 ~~i~~~~~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~~~---------------~~~~~ 561 (974)
T PLN02843 497 ETIAHVKSIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGVLG---------------SREGL 561 (974)
T ss_pred hhHHHHHHHHHhhCCcccccCCHHHhCcccccCchhhhEecccccccchhcCCChHHHhc---------------ccccc
Confidence 112233333222211000 01112
Q ss_pred cccCCCcceEEEeeecCcc--hhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhh---------
Q psy2393 304 FISSPNTEQYHFIGKDIFY--FHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLK--------- 371 (576)
Q Consensus 304 ~w~~~~~~~i~~~G~D~~~--fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~--------- 371 (576)
+||.+ +++.|+||++ ||..+|+++ ...|..+++.+++|||+++ +|+|||||+||+|+|.++++
T Consensus 562 ~~PaD----l~~eG~Di~rgWf~s~l~~~~-~~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~ 636 (974)
T PLN02843 562 SYPAD----LYLEGSDQHRGWFQSSLLTSV-ATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEP 636 (974)
T ss_pred CCCce----eeeeeccccchHHHHHHHHHH-HhcCCCccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhcccccccc
Confidence 34433 8999999997 778888765 4456666699999999999 89999999999999999999
Q ss_pred cCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHc-CCCCCC-ccc-CChHHHHHHHH
Q psy2393 372 IGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYF-KGYLNM-KWV-KDNDTFLSKLR 448 (576)
Q Consensus 372 ~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~-~~~~~~-~~~-~d~~~l~~~l~ 448 (576)
+ ||+|+||||+++. ++..|++|+.+.+.+. .+.+++++|+++++.+-+.... ...++. .+. .| +|++++++
T Consensus 637 ~-yGaD~lR~~l~~~--~~~~d~~~s~~~l~~~--~~~~~kl~n~~rf~lgnl~~~~~~~~~~~~~~~~~D-~wiLskL~ 710 (974)
T PLN02843 637 A-YGADVLRLWVASV--DYTGDVLIGPQILKQM--SDIYRKLRGTLRYLLGNLHDWKPDNAVPYEDLPSID-KYALFQLE 710 (974)
T ss_pred c-cChHHHHHHHHhc--ccCCCceeCHHHHHHH--HHHHHHHHHHHHHHHhCccCCCcccccCccccCHHH-HHHHHHHH
Confidence 8 9999999999975 6778999999876554 4568889999866543332210 011221 122 25 99999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHhhhhcCccccccCccc--HHHHHHHHHHHHHHHHHHHHhccccccHH
Q psy2393 449 VVSSSIQKYYENRNFNKVLYIVIEQT--NFINIFFDQNKPWKLAKNNIY--HEKLHKISSRLLEAFRILTIYLKPILPNL 524 (576)
Q Consensus 449 ~~~~~v~~a~~~~~~~~~~~~l~~~~--~~~n~y~~~~k~~~~~~~~~~--~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ 524 (576)
.+.+.+.++|++|+|++|++.|++|+ +++|.|++..|||.+.+.... ++.++ .++..++..++++|+|||||+
T Consensus 711 ~li~~v~~aye~y~f~~A~~~i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~q---tvL~~iLe~l~~LLaPimPf~ 787 (974)
T PLN02843 711 NVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQ---TVLAAHLLSLLRAIAPILPHL 787 (974)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHH---HHHHHHHHHHHHHHhhhhhHH
Confidence 99999999999999999999999984 799999999999988653212 22234 445577788899999999999
Q ss_pred HHHHHHHcCC
Q psy2393 525 AKSVETFLNI 534 (576)
Q Consensus 525 ae~i~~~L~~ 534 (576)
||+||+.|+.
T Consensus 788 aEEiw~~L~~ 797 (974)
T PLN02843 788 AEDAWQNLPF 797 (974)
T ss_pred HHHHHHhccc
Confidence 9999999985
No 24
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=1.4e-76 Score=676.66 Aligned_cols=490 Identities=23% Similarity=0.304 Sum_probs=394.2
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc-CCC------H
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA-GMT------P 81 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~-g~~------~ 81 (576)
+++++|+|++|||||||.|||||+++++++|+++||+||+| ++|++++|||+||+||+.+|++. |.+ +
T Consensus 33 ~~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G-----~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~ 107 (861)
T TIGR00392 33 KGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQG-----FNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISS 107 (861)
T ss_pred CCCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCC-----CccCCCCCcCCCccHHHHHHHHHhCcccccccch
Confidence 45678999999999999999999999999999999999999 99999999999999999999875 654 3
Q ss_pred ----------HHHHHHHHHHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccc
Q psy2393 82 ----------KEFINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFL 149 (576)
Q Consensus 82 ----------~~~~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l 149 (576)
+++++++.+.++++|++||+ +|++.+.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|+|
T Consensus 108 ~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~-~~gliyr~~~~v~w~p~~~T~L 186 (861)
T TIGR00392 108 LEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAH-EKGLLYRGLKPVYWSPRCRTAL 186 (861)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHH-HCCCEeecceeeecCCCcCCcc
Confidence 47889999999999999999 7789999999999999999999999 9999999999999999999999
Q ss_pred cccceeccC-------C-------CCC-------------------------------CCC-C-----------------
Q psy2393 150 PDRYIKGEC-------P-------ICN-------------------------------AKD-Q----------------- 166 (576)
Q Consensus 150 ~~~~v~~~~-------p-------~c~-------------------------------~~~-~----------------- 166 (576)
+++||++.+ | ..+ .++ .
T Consensus 187 a~~Ev~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~l~i~TTrP~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~i~~~ 266 (861)
T TIGR00392 187 AEAEVEYKENYKDVKDPSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWTLPSNLAIAVHPDFEYALVQDNTKVEYFILAK 266 (861)
T ss_pred cHHHHhcccccccccCceEEEEEEecCCcccccccccceEEEEECCcccccCCeeeeeCCCCceEEEEcCCCCcEEEEeH
Confidence 999986321 1 000 000 0
Q ss_pred -------------C---------------------C---------C----------------------------------
Q psy2393 167 -------------Y---------------------G---------D---------------------------------- 169 (576)
Q Consensus 167 -------------~---------------------g---------~---------------------------------- 169 (576)
+ + .
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~p~v~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~ 346 (861)
T TIGR00392 267 KLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKY 346 (861)
T ss_pred HHHHHHHHhcCCceEEEeeecchhhCCCEEECCCCccccccccCCcEEeCCCCCCCCCCCceeEcCCCCCHHHHHHHHHc
Confidence 0 0 0
Q ss_pred ----cc--ccCCCcCCC--C------c------------------------------cCCCcccCCCCccEEeeecceeE
Q psy2393 170 ----FC--ECCSSIYTP--T------K------------------------------LINPYSILSGTKPIIKSSKHFFF 205 (576)
Q Consensus 170 ----~c--~~cg~~~~~--~------~------------------------------l~~p~~~~~~~~~~~~~~~~~f~ 205 (576)
.| +..|++.+. . . ...|+|||||++++++.++|||+
T Consensus 347 ~l~~~~~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~v~~~~~~QWFi 426 (861)
T TIGR00392 347 GLEVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFI 426 (861)
T ss_pred CCCcccccCCCceECCcCccccccccccCCccHHHhHHHHHHHHHhCCCeeeeeeEecCCCccCCCCCEEEEecCccccE
Confidence 00 001111000 0 0 01489999999999999999999
Q ss_pred ecCchhhHHHHHHhhhcCC-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCC---C------------------
Q psy2393 206 KLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPN---T------------------ 263 (576)
Q Consensus 206 ~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~---~------------------ 263 (576)
++ +++++.++++ +++. ++|+..++++.+|++ +++|||||||+ +||+|||. .
T Consensus 427 ~~--~~~k~~~l~~-~~~i~~~P~~~~~~~~~~l~---~l~DW~ISRqr-~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~ 499 (861)
T TIGR00392 427 KT--KDIKDQMLEQ-IKKVNWVPEWGEGRFGNWLE---NRPDWCISRQR-YWGIPIPIWYCEDTGEPIVVGSIEELIELI 499 (861)
T ss_pred Ec--HHHHHHHHHH-hCCcEEECchHHHHHHHHHh---CCCcceeeccc-cCCCeeeEEEECCCCCCcCchhHHHHHHHH
Confidence 99 9999999999 7776 578889999999998 89999999999 99999995 1
Q ss_pred --------------------------------CCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcc
Q psy2393 264 --------------------------------LEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTE 311 (576)
Q Consensus 264 --------------------------------~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~ 311 (576)
+..++||||||.++|++..+ +... ..+|+.+||.+
T Consensus 500 ~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~dvlDvWfdS~~~~~~~~~-~~~~---------~~~f~~~~P~d--- 566 (861)
T TIGR00392 500 ELKGIDAWFEDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPYASIH-YPFE---------NEKFKEVFPAD--- 566 (861)
T ss_pred HHhCCccccccchhhhcCchhccCCCCcceEEccccccchhhcCcchHHhcC-CCCC---------cchhhccCCce---
Confidence 11378999999988887654 1111 13577788754
Q ss_pred eEEEeeecCcc--hhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCC
Q psy2393 312 QYHFIGKDIFY--FHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLN 388 (576)
Q Consensus 312 ~i~~~G~D~~~--fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~ 388 (576)
++++|+||++ ||..+|++++. .+..+|+.+++||||++ +|+|||||+||+|+|.|++++ ||+|++|||+++. +
T Consensus 567 -~~i~G~Di~r~Wf~~~~~~~~~~-~~~~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~-yGaDalR~~ll~~-~ 642 (861)
T TIGR00392 567 -FILEGSDQTRGWFYSSLAIGTAL-FGQAPYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINK-YGADILRLYVASS-D 642 (861)
T ss_pred -EEEEecchhccHHHHHHHHHHHH-cCCCChHhhEecceEECCCCCCcCCCCCCCCCHHHHHHH-cCHHHHHHHHHhC-C
Confidence 9999999997 78888887554 46677799999999998 999999999999999999999 9999999999998 4
Q ss_pred CCCCCcccchhhHhhhhhHHHHHHHHHHHHHHH--HHHHHHcC--CCCC-CcccC-ChHHHHHHHHHHHHHHHHHHHhhh
Q psy2393 389 NKIEDIDFNSQSFISCVNSDLIGKYINIASRSS--SFIEKYFK--GYLN-MKWVK-DNDTFLSKLRVVSSSIQKYYENRN 462 (576)
Q Consensus 389 ~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~--~~~~~~~~--~~~~-~~~~~-d~~~l~~~l~~~~~~v~~a~~~~~ 462 (576)
...|++|+++.+... ++.+.+.++|++.++. +.+.+... ...+ ..+.. | .++++++..+.+.+.++|++|+
T Consensus 643 -~~~D~~fs~~~l~~~-~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~~~~l~~~d-~~ll~~l~~~~~~v~~~~e~~~ 719 (861)
T TIGR00392 643 -PWEDLRFSDEILKQV-VEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEED-RWILSRLNSLVEEVNEALEKYN 719 (861)
T ss_pred -CCCCceECHHHHHHH-HHHHHHHHHHHHHHHHHHhccccCCccccccccccCCHHH-HHHHHHHHHHHHHHHHHHHhcc
Confidence 458899999987554 3557788888876665 33322110 0111 11222 5 9999999999999999999999
Q ss_pred HHHHHHHHHHHHH--HHHHhhhhcCc--cccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCC
Q psy2393 463 FNKVLYIVIEQTN--FINIFFDQNKP--WKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNIS 535 (576)
Q Consensus 463 ~~~~~~~l~~~~~--~~n~y~~~~k~--~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~ 535 (576)
|+.|++.|++|+. ++|.|++.+|+ |....+ ... +++..++..+++.++++|+|||||+||+||+.|+..
T Consensus 720 ~~~a~~~l~~f~~~~l~n~Yi~~~k~~lw~~~~~--~~~--~~~~~~l~~~l~~l~~lL~P~~P~~aeeiw~~L~~~ 792 (861)
T TIGR00392 720 FHKVLRALQDFIVEELSNWYIRIIRDRLYCEAKD--NDK--RAAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPGG 792 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCC--HHH--HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccc
Confidence 9999999999984 69999999987 433322 111 234566678899999999999999999999999853
No 25
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=2.2e-76 Score=676.26 Aligned_cols=493 Identities=18% Similarity=0.221 Sum_probs=381.1
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH-----cCCCH--
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK-----AGMTP-- 81 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~-----~g~~~-- 81 (576)
.++++|+|++||||+||.|||||+++++++|+++||+||+| ++|+|++|||+||+|++.++++ .|.++
T Consensus 125 ~~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G-----~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~ 199 (1066)
T PLN02381 125 SSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSG-----YNALWVPGVDHAGIATQVVVEKKLMRERHLTRHD 199 (1066)
T ss_pred CCCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCC-----CcccccCCCCCCcChHHHHHHHHhHhhcCCChhh
Confidence 35678999999999999999999999999999999999999 9999999999999999999875 35543
Q ss_pred ----------HHHHHHHHHHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccc
Q psy2393 82 ----------KEFINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFL 149 (576)
Q Consensus 82 ----------~~~~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l 149 (576)
.++++++...++++|++||+ +|++.+.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|.|
T Consensus 200 ~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~-~~GlIyr~~~~VnWcP~~~TaL 278 (1066)
T PLN02381 200 IGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLY-KEGLIYRDIRLVNWDCTLRTAI 278 (1066)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHH-HCCCEEeccccccCCCCCCCCc
Confidence 36788999999999999998 5558889999999999999999999 9999999999999999999999
Q ss_pred cccceeccC--------------------------CCCCC-----------------------C----------------
Q psy2393 150 PDRYIKGEC--------------------------PICNA-----------------------K---------------- 164 (576)
Q Consensus 150 ~~~~v~~~~--------------------------p~c~~-----------------------~---------------- 164 (576)
++.||+++- |..+. +
T Consensus 279 Sd~EVey~d~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vATtRpEti~g~~avaV~P~d~ry~~L~G~~~~~P 358 (1066)
T PLN02381 279 SDVEVDYIDIKERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETMLGDTAIAIHPDDERYKHLHGKFAVHP 358 (1066)
T ss_pred cHHHhhhhccccchhhcccCCCcceeeEEEEEEEEEecCCCCEEEEecCCHHHHhcccceeeCCCCcchhhhCCCEEECC
Confidence 999775310 00000 0
Q ss_pred ----------C------CCCCccc--------------------------cCCCcCCC----------------------
Q psy2393 165 ----------D------QYGDFCE--------------------------CCSSIYTP---------------------- 180 (576)
Q Consensus 165 ----------~------~~g~~c~--------------------------~cg~~~~~---------------------- 180 (576)
+ .+|..|. ..|++.+.
T Consensus 359 l~~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~ 438 (1066)
T PLN02381 359 FNGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQ 438 (1066)
T ss_pred CCCCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHH
Confidence 0 0111110 11211110
Q ss_pred ----------CccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhh-----cCC-CCChhHHHHHHHHHhhcCCC
Q psy2393 181 ----------TKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAI-----HDK-RLQPEIVNKIKEWLEKDNKF 244 (576)
Q Consensus 181 ----------~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~-----~~~-~~~~~~~~~~~~~l~~~~~~ 244 (576)
-+...|+||||+++++++.++|||+++ ..+++.+.+. + ++. ++|+..++++.+|++ ++
T Consensus 439 ~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~--~~l~~~al~a-v~~~~~~~i~~~P~~~~~~~~~wl~---n~ 512 (1066)
T PLN02381 439 KKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNC--SSMAKQALDA-AIDGENKKLEFIPKQYLAEWKRWLE---NI 512 (1066)
T ss_pred hCCCEecceeeecCCCeeCCCCceEEEeecccceEEc--hHHHHHHHHH-HhhccCCceEEEChHHHHHHHHHHh---cC
Confidence 011259999999999999999999999 8999999998 5 333 578889999999998 99
Q ss_pred CCcccccCCCCCCeecCCC---------------------------------------------CCcEEEEEeecccchh
Q psy2393 245 NDWDISRDAPYFGIKIPNT---------------------------------------------LEKYFYVWLDAPIGYL 279 (576)
Q Consensus 245 ~dw~isR~~~~WG~~iP~~---------------------------------------------~~~~~~vw~d~~~~~~ 279 (576)
+|||||||+ +||+|||.. +..++++||++.+.++
T Consensus 513 ~DWcISRQr-~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~ 591 (1066)
T PLN02381 513 RDWCISRQL-WWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSGLFPL 591 (1066)
T ss_pred ccceeeeec-ccCCccceEEeccChhhcccCCcccceEEEccchHhhcchhhcccCCCccceeecCceeeEEEeCCchHH
Confidence 999999999 999999951 0124567777766665
Q ss_pred hhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhcCCCCC-cEEeeeccEEe-CCcccc
Q psy2393 280 ASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLP-NNIFVHGFMTI-NGKKMS 357 (576)
Q Consensus 280 ~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~~~p-~~~~~~g~v~~-~g~KMS 357 (576)
+.++ +... ..+++.+||.+ +++.|.||+|||-.....+...+....| +.++.||||++ +|+|||
T Consensus 592 ~~lg-~P~~---------~~~~~~~~P~d----~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G~KMS 657 (1066)
T PLN02381 592 SVLG-WPDD---------TDDLKAFYPTS----VLETGHDILFFWVARMVMMGMQLGGDVPFRKVYLHPMIRDAHGRKMS 657 (1066)
T ss_pred HHhc-CCCC---------HHHHhccCCCe----eeeecchhhhhHHHHHHHHHHHhCCCCchHHheecceEECCCCCCCC
Confidence 5443 1110 13455566654 8889999998753332222222334455 89999999999 999999
Q ss_pred ccCCCccChhHHhh-------------------------------------cCCChhHHHHHHHhhCCCCCCCcccchhh
Q psy2393 358 KSNKIGISPLYYLK-------------------------------------IGMNPEWLRYYIASKLNNKIEDIDFNSQS 400 (576)
Q Consensus 358 KS~gn~i~~~dll~-------------------------------------~g~g~d~lR~~l~~~~~~~~~d~~fs~~~ 400 (576)
||+||+|+|.++++ + ||+|+||||+++..+.+ +|++|+.++
T Consensus 658 KS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~-yGADalR~~l~~~~~~~-~di~~~~~~ 735 (1066)
T PLN02381 658 KSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAE-CGTDALRFALVSYTAQS-DKINLDILR 735 (1066)
T ss_pred CCCCCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccc-cChHHHHHHHHcCCccc-cccCccHHH
Confidence 99999999999998 7 99999999999876555 588999988
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHcCC--CCC-Cccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--
Q psy2393 401 FISCVNSDLIGKYINIASRSSSFIEKYFKG--YLN-MKWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT-- 474 (576)
Q Consensus 401 ~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~--~~~-~~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~-- 474 (576)
+... ++++++++|++..+...+...+.. .++ ..+. .| +|++++|+.+.+.+.++|++|+|+.|++.|++|+
T Consensus 736 v~~~--r~f~nKlwNa~rf~~~~~~~~~~~~~~~~~~~~~~~D-rWILskL~~~i~~v~~~~e~y~F~~A~~~l~~F~~~ 812 (1066)
T PLN02381 736 VVGY--RQWCNKLWNAVRFAMSKLGDDYTPPATLSVETMPFSC-KWILSVLNKAISKTVSSLDAYEFSDAASTVYSWWQY 812 (1066)
T ss_pred HHHH--HHHHHHHHHHHHHHHhhcccccCcccccCccccCHHH-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 7633 678999999985543322111110 111 1122 26 9999999999999999999999999999999995
Q ss_pred HHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcC
Q psy2393 475 NFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLN 533 (576)
Q Consensus 475 ~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~ 533 (576)
++||+|++.+|+|.+.+..........+..++..+|..+++||+|||||+||+||+.|+
T Consensus 813 dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfitEELw~~L~ 871 (1066)
T PLN02381 813 QFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLP 871 (1066)
T ss_pred HhHHHHHHHhHHHHccCCccccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh
Confidence 89999999999997754321001112334566688889999999999999999999996
No 26
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=2.4e-76 Score=680.32 Aligned_cols=488 Identities=19% Similarity=0.254 Sum_probs=389.5
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH-----cCCCH--
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK-----AGMTP-- 81 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~-----~g~~~-- 81 (576)
.++++|+|++|||||||.|||||+++++++|+++||+||+| ++|+|++|||+||++++.++++ .|.++
T Consensus 57 ~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G-----~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~ 131 (995)
T PTZ00419 57 NSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKG-----DETLWVPGTDHAGIATQVVVEKKLMKEENKTRHD 131 (995)
T ss_pred CCCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcC-----CcccCCCCCCCCchhhHHHHHHHHHHhcCCChHH
Confidence 35678999999999999999999999999999999999999 9999999999999999766543 35443
Q ss_pred ----------HHHHHHHHHHHHHHHhhcCcccc--ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccc
Q psy2393 82 ----------KEFINNISSNRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFL 149 (576)
Q Consensus 82 ----------~~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l 149 (576)
.++++++...++++|++||+++| +.+.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|+|
T Consensus 132 ~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~-~~Gliyr~~~~V~wcp~~~Tal 210 (995)
T PTZ00419 132 LGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLY-EDGLIYRDTRLVNWCCYLKTAI 210 (995)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHH-HCCCEEecceeeecCCCCCCCC
Confidence 35789999999999999998555 8999999999999999999999 9999999999999999999999
Q ss_pred cccceecc------------------------------------------CC----------------------------
Q psy2393 150 PDRYIKGE------------------------------------------CP---------------------------- 159 (576)
Q Consensus 150 ~~~~v~~~------------------------------------------~p---------------------------- 159 (576)
++.||++. .|
T Consensus 211 sd~EVe~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~vaTTrPeTl~g~~avav~P~d~~y~~l~G~~~~~ 290 (995)
T PTZ00419 211 SDIEVEFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIVVATTRIETMLGDVAVAVHPKDERYKKLHGKELIH 290 (995)
T ss_pred chhhcccccccccceeeccccccccccceeEEEEEeecCCCCcEEEEEeCCcchhhhCeEEEECCCCcHHHHhcCCEEEC
Confidence 99998721 01
Q ss_pred -C-CCC-----------CCCCCCcccc--------------------------CCCcCCC-C------------------
Q psy2393 160 -I-CNA-----------KDQYGDFCEC--------------------------CSSIYTP-T------------------ 181 (576)
Q Consensus 160 -~-c~~-----------~~~~g~~c~~--------------------------cg~~~~~-~------------------ 181 (576)
. .+. ...+|..|.. .|++... .
T Consensus 291 Pl~~~~~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L 370 (995)
T PTZ00419 291 PFIPDRKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHRFDCRRKIEEEL 370 (995)
T ss_pred CccCCCEEEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHH
Confidence 0 000 0001111110 1111000 0
Q ss_pred ------------ccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcC--C-CCChhHHHHHHHHHhhcCCCCC
Q psy2393 182 ------------KLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD--K-RLQPEIVNKIKEWLEKDNKFND 246 (576)
Q Consensus 182 ------------~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~--~-~~~~~~~~~~~~~l~~~~~~~d 246 (576)
....|+|||||++++++.++|||+++ +.+++.+.++ ++. . ++|+..++++.+|++ +++|
T Consensus 371 ~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~--~~~~~~al~~-v~~~~i~~~P~~~~~~~~~wl~---~l~D 444 (995)
T PTZ00419 371 KEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNC--KDMAKRAVEA-VRNGELKIIPSSHENVWYHWLE---NIQD 444 (995)
T ss_pred HhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEec--HHHHHHHHHH-hhcCCeEEEChHHHHHHHHHHh---cccc
Confidence 01248999999999999999999999 9999999999 653 3 578889999999998 8999
Q ss_pred cccccCCCCCCeecCCC---------------------------------------------CCcEEEEEeecccchhhh
Q psy2393 247 WDISRDAPYFGIKIPNT---------------------------------------------LEKYFYVWLDAPIGYLAS 281 (576)
Q Consensus 247 w~isR~~~~WG~~iP~~---------------------------------------------~~~~~~vw~d~~~~~~~~ 281 (576)
||||||+ +||+|||.. +.+++++|||+...+++.
T Consensus 445 WcISRQr-~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~ 523 (995)
T PTZ00419 445 WCISRQL-WWGHRIPAYRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFST 523 (995)
T ss_pred ceeeeec-ccCceeeEEEeCCCCccccCCCCceEEEcCCHHHHHhhhccccCCccccCCeEECCceEEEEEeCCHHHHHH
Confidence 9999999 999999962 127889999999888776
Q ss_pred cchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhc----CCCCC-cEEeeeccEEe-CCcc
Q psy2393 282 LKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFS----GRKLP-NNIFVHGFMTI-NGKK 355 (576)
Q Consensus 282 ~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~----~~~~p-~~~~~~g~v~~-~g~K 355 (576)
++. ... ..+++.|||.+ +++.|+||++| |++.++.+ ....| +.+++||||.+ +|+|
T Consensus 524 ~g~-p~~---------~~~~~~~~P~d----~~~~G~Dii~~----W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G~K 585 (995)
T PTZ00419 524 LGW-PDQ---------TDDLQRFFPTS----LLETGSDILFF----WVARMVMMSLHLTDKLPFKTVFLHAMVRDSQGEK 585 (995)
T ss_pred hCC-CCC---------hHHHhhcCCCc----EEEechhHHhH----HHHHHHHHHHHhcCCCChHHHhccceEECCCCCC
Confidence 541 111 13567778765 99999999986 44433322 22566 89999999999 9999
Q ss_pred ccccCCCccChhHHhh-------------------------------------cCCChhHHHHHHHhhCCCCCCCcccch
Q psy2393 356 MSKSNKIGISPLYYLK-------------------------------------IGMNPEWLRYYIASKLNNKIEDIDFNS 398 (576)
Q Consensus 356 MSKS~gn~i~~~dll~-------------------------------------~g~g~d~lR~~l~~~~~~~~~d~~fs~ 398 (576)
||||+||+|+|.++++ + ||+|++|||+++..+.+ .|++|+.
T Consensus 586 MSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~-yGaDalR~~l~~~~~~~-~Di~~~~ 663 (995)
T PTZ00419 586 MSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPE-CGTDALRFGLLAYTQQG-RNINLDI 663 (995)
T ss_pred cccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcc-cCcHHHHHHHHhcCCCC-CCccccH
Confidence 9999999999999999 7 99999999999876554 7899999
Q ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCC---C----C-CcccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy2393 399 QSFISCVNSDLIGKYINIASRSSSFIEKYFKGY---L----N-MKWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYI 469 (576)
Q Consensus 399 ~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~---~----~-~~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~ 469 (576)
+.+... ++++++++|+++++...+.+...+. . + ..+.. | +|++++++.+.+.+.++|++|+|+.|++.
T Consensus 664 ~~v~~~--~~f~nklwN~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-~wIls~L~~~i~~v~~~~e~y~f~~A~~~ 740 (995)
T PTZ00419 664 NRVVGY--RHFCNKLWNAVKFALMKLLKDFNLPNSTLFKPNNVESLPWED-KWILHRLNVAIKEVTEGFKEYDFSEATQA 740 (995)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHhcccccccccccccccccccccCCHHH-HHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 887643 7799999999988765443321111 0 0 11222 5 99999999999999999999999999999
Q ss_pred HHHHH--HHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 470 VIEQT--NFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 470 l~~~~--~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
|++|+ +++|+|++.+|+|.....+ . ...+.+..++..+|+.++++|+|||||+||+||+.|+.
T Consensus 741 i~~F~~~~~~n~Yie~~K~~l~~~~~-~-~~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw~~L~~ 805 (995)
T PTZ00419 741 TYNFWLYELCDVYLELIKPRLSKQSD-G-ERKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQRLPN 805 (995)
T ss_pred HHHHHHHhhHHHHHHHhhhhhhcCCC-c-HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhc
Confidence 99985 8999999999998732221 1 22344567778899999999999999999999999973
No 27
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=1.7e-75 Score=669.25 Aligned_cols=496 Identities=19% Similarity=0.243 Sum_probs=385.0
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH-cCC--------
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK-AGM-------- 79 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~-~g~-------- 79 (576)
+++++|++++||||+||.|||||+++++++|+++||+||+| ++|.|++|||+||+||+.++++ .|.
T Consensus 99 ~~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G-----~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~ 173 (1205)
T PTZ00427 99 KNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCG-----FSVERKFGWDCHGLPIEYEIEKENNINKKEDILK 173 (1205)
T ss_pred CCCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCC-----CeeccCCccCCCCcHHHHHHHHHhCCCcccchhh
Confidence 45677999999999999999999999999999999999999 9999999999999999999986 332
Q ss_pred --------CHHHHHHHHHHHHHHHHhhcC--ccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccc
Q psy2393 80 --------TPKEFINNISSNRKKYLDGFY--IKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFL 149 (576)
Q Consensus 80 --------~~~~~~~~~~~~~~~~l~~lg--i~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l 149 (576)
.|.+++.+|.+.+++++++|| ++||+.|.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|.|
T Consensus 174 ~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~-ekGlIYr~~k~V~wcp~c~TaL 252 (1205)
T PTZ00427 174 MGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELY-KNNYVYKSFKVMPYSCKCNTPI 252 (1205)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHH-HCCCEEecceeeccCCCCCCch
Confidence 246788999999999999999 68899999999999999999999999 9999999999999999999999
Q ss_pred ccccee--cc----------------------------------------------------------------------
Q psy2393 150 PDRYIK--GE---------------------------------------------------------------------- 157 (576)
Q Consensus 150 ~~~~v~--~~---------------------------------------------------------------------- 157 (576)
+++||. +.
T Consensus 253 S~~EV~~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~lliw 332 (1205)
T PTZ00427 253 SNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYNNKRENSNNGNNNSTNNVCYAQHSEILAW 332 (1205)
T ss_pred hHHHhhcccccccCceEEEEeecccccccccccccccccccccccceeeccccccccccccccccccccccCCCCEEEEE
Confidence 999881 10
Q ss_pred --CC----CC----CCCC------------------------------------------------------C-------
Q psy2393 158 --CP----IC----NAKD------------------------------------------------------Q------- 166 (576)
Q Consensus 158 --~p----~c----~~~~------------------------------------------------------~------- 166 (576)
.| .| ..++ .
T Consensus 333 TTtPwTLpan~AlaVnPd~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~Y~pl~~~~~~~ 412 (1205)
T PTZ00427 333 TTTPWTLPSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKELKWNVEDLKIVNRFKGKELKGLRYKPLFTNFYEK 412 (1205)
T ss_pred ECCchhhhhceEEEECCCCeEEEEEecCCCeEEEEehHHHHHHHHhhcccccccEEEEEeechhhCCCeeeCCccccccc
Confidence 01 00 0000 0
Q ss_pred -------------------CCCc----cc----------------------------cCCCcCCCC-c------------
Q psy2393 167 -------------------YGDF----CE----------------------------CCSSIYTPT-K------------ 182 (576)
Q Consensus 167 -------------------~g~~----c~----------------------------~cg~~~~~~-~------------ 182 (576)
.|.. |+ ..|++.+.. +
T Consensus 413 ~~~~~~~~pVi~~d~V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~dA~~~ 492 (1205)
T PTZ00427 413 YNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPLDANGYFTNEVEEVQNLYIKEADNV 492 (1205)
T ss_pred cccCCceeEEEccCccCCCCCceeeEecCCCChhHHHHHHHcCCCCccccccccccCCCceecCCCcccCCCCHHHhHHH
Confidence 0000 00 011111000 0
Q ss_pred ------------------cCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC-CCChhH-HHHHHHHHhhcC
Q psy2393 183 ------------------LINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEI-VNKIKEWLEKDN 242 (576)
Q Consensus 183 ------------------l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~-~~~~~~~l~~~~ 242 (576)
...|+|||||+|++++.++|||+++ +.+++.+.+. .+.. ++|+.. .+++.+||+
T Consensus 493 Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~--~~~k~~~l~~-~~~i~w~P~~~~~~r~~~wl~--- 566 (1205)
T PTZ00427 493 IKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRV--SNSTNELVKN-NETTYWIPAHIKEKKFHNWIK--- 566 (1205)
T ss_pred HHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeC--cHHHHHHHHc-CCccEEeCchhhHhHHHHHHh---
Confidence 0249999999999999999999999 8899998887 7776 457777 589999998
Q ss_pred CCCCcccccCCCCCCeecCCC----C--------------------------------------C----------cEEEE
Q psy2393 243 KFNDWDISRDAPYFGIKIPNT----L--------------------------------------E----------KYFYV 270 (576)
Q Consensus 243 ~~~dw~isR~~~~WG~~iP~~----~--------------------------------------~----------~~~~v 270 (576)
+++|||||||+ +||+|||.. . + .++++
T Consensus 567 n~~DWcISRqR-~WGtPIPvW~~~~~~~~~~i~s~~el~~~~~~~~~~dlh~~~iD~~~~~~~~g~~~~~~~r~~DVlD~ 645 (1205)
T PTZ00427 567 DAKDWCISRNR-YWGTPIPIWADEKMETVICVESIKHLEELSGVKNINDLHRHFIDHIEIKNPKGKTYPKLKRIPEVFDC 645 (1205)
T ss_pred cCccceeeecc-ccCccceeEEcCCCCeEeccCCHHHHHHHhccccchhhcccccChhhccCCccccccceeecCceEEE
Confidence 88999999999 999999930 0 0 16778
Q ss_pred EeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhcCCCCC-cEEeeeccE
Q psy2393 271 WLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLP-NNIFVHGFM 349 (576)
Q Consensus 271 w~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~~~p-~~~~~~g~v 349 (576)
|||+.....+..+. .... ....|+.++|.+ +...|.||+++|-.....+..++....| +.+++||||
T Consensus 646 WFdSg~~p~a~~~~-P~~~-------~~~~f~~~fPaD----~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~VlvHG~V 713 (1205)
T PTZ00427 646 WFESGSMPYAKVHY-PFST-------EKEDFHKIFPAD----FIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLV 713 (1205)
T ss_pred EEeCCCChHHHhCC-Cccc-------chhhHhccCCce----EEEEecchhccHHHHHHHHHHHhcCCCCcceeEEccEE
Confidence 88887766554321 1100 014566667764 8899999997764332222222333455 999999999
Q ss_pred Ee-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHc
Q psy2393 350 TI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYF 428 (576)
Q Consensus 350 ~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~ 428 (576)
++ +|+|||||+||+|+|.+++++ ||+|+||||+++..+....|++|+.+.+.+.. +.++++++|.+..+...+..+.
T Consensus 714 ld~dG~KMSKSlGNvIDP~evI~k-YGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~-r~~l~klwN~~rF~~~~i~~~~ 791 (1205)
T PTZ00427 714 LASDGKKMSKRLKNYPDPLYILDK-YGADSLRLYLINSVAVRAENLKFQEKGVNEVV-KSFILPFYHSFRFFSQEVTRYE 791 (1205)
T ss_pred EcCCCCCcccCCCCCCCHHHHHHh-cCCcHHHHHHHhcCCCCCcccccCHHHHHHHH-HHHHHHHHHHHHHHHhcccccc
Confidence 99 999999999999999999999 99999999999864434478899999876655 5567888888755443222110
Q ss_pred C----CC--CC----Cccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHhhhhcCccccccCcccH
Q psy2393 429 K----GY--LN----MKWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT-NFINIFFDQNKPWKLAKNNIYH 496 (576)
Q Consensus 429 ~----~~--~~----~~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~-~~~n~y~~~~k~~~~~~~~~~~ 496 (576)
. +. .+ .... .| +|+++.++++.+.+.++|++|+++.|++.|++|+ .++|+|++.+|++.+.... .
T Consensus 792 ~~~~~~f~~~~~~~~~~~~~~D-rWILs~l~~li~~v~~~me~Y~f~~A~~~i~~Fi~~lsnwYIe~~K~rl~~~~~--~ 868 (1205)
T PTZ00427 792 CLNKKQFLFNTDYIYKNDNIMD-QWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFIENLTNWYIRLNRDRMRGSLG--E 868 (1205)
T ss_pred ccccccCCcCcccccccCCHHH-HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHcchhhccCCC--c
Confidence 0 00 00 1112 25 9999999999999999999999999999999999 5999999999986654321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 497 EKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 497 ~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
....+++++|.++|+.++++|+|||||+||+||+.|+.
T Consensus 869 ~~~~~a~~tL~~vL~~~~~LLaPf~PfiaEeiyq~L~~ 906 (1205)
T PTZ00427 869 ENCLQSLCTTYRTLHLFTVLMAPFTPFITEYIYQQLRR 906 (1205)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHhhh
Confidence 23456778889999999999999999999999999963
No 28
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=4e-73 Score=647.39 Aligned_cols=487 Identities=18% Similarity=0.229 Sum_probs=382.4
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcC-----------
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAG----------- 78 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g----------- 78 (576)
.+++|+|+.||||+||.|||||+++++++|+++||+||+| ++|+|++|||+||+||+..|++..
T Consensus 23 ~~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G-----~~vl~p~G~d~~G~pi~~~aek~~~~~~~~~~~~~ 97 (938)
T TIGR00395 23 DREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKG-----KNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYT 97 (938)
T ss_pred CCCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcC-----CccCCCCccCCCCCchHHHHHHhhhhhhhccccch
Confidence 4678999999999999999999999999999999999999 999999999999999999887621
Q ss_pred -------------CCHHHHHHHHHHHHHHHHhhcCccc--cccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecC
Q psy2393 79 -------------MTPKEFINNISSNRKKYLDGFYIKF--DNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDP 143 (576)
Q Consensus 79 -------------~~~~~~~~~~~~~~~~~l~~lgi~~--d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~ 143 (576)
.+|.++++++...++++|++||+++ ++.+.|+++.|.+.+++.|.+|+ ++|+||++..+++|||
T Consensus 98 ~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~-e~G~iy~g~~~v~wcp 176 (938)
T TIGR00395 98 EVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLK-ELGLIVKGEHPVRYCP 176 (938)
T ss_pred hhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHH-HCCCEecCCeeEeecC
Confidence 3567888999999999999999955 57888999999999999999999 9999999999999999
Q ss_pred CCCccccccceecc---------------------------C-------------CCC--------CC------------
Q psy2393 144 IKNIFLPDRYIKGE---------------------------C-------------PIC--------NA------------ 163 (576)
Q Consensus 144 ~~~~~l~~~~v~~~---------------------------~-------------p~c--------~~------------ 163 (576)
.|+|.++++++++. . |.. +.
T Consensus 177 ~~~t~lsd~e~~~~e~~~~~~~~~ikf~~~~~~~~l~~aTtRPETl~g~tav~V~P~~~Y~~~~~~~e~~i~s~~~~~~~ 256 (938)
T TIGR00395 177 KDGNPVEDHDLLSGEGVTIVEYILIKFELEDGAFYFVAATLRPETVYGVTNCWVNPTITYVIAEVGGEKWITSKEAFENL 256 (938)
T ss_pred CCCCCCchhHhccCCccccceEEEEEEEcCCCceEEEEeeCCcchhhcceeEEECCCCcEEEEEeCCcEEEEeHHHHHhh
Confidence 99999999988520 0 100 00
Q ss_pred ---------------C-------------------------CCCCCccc-------------------------------
Q psy2393 164 ---------------K-------------------------DQYGDFCE------------------------------- 172 (576)
Q Consensus 164 ---------------~-------------------------~~~g~~c~------------------------------- 172 (576)
. ..+|..|.
T Consensus 257 ~~q~~~~~~~~~~~g~~l~G~~~~~P~~~~~ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~~~~~l~~~~~~~gi~~~~~ 336 (938)
T TIGR00395 257 SYQKLKYKPIEEVPGKQFIGKKVHNPVVGPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEYLGIKPVVI 336 (938)
T ss_pred hhcccceeEEEEEchHhccCCEEECCCCCCeeEEeecceeecCCCcceEEeCCCCCHHHHHHHHHhhhcchhcCCcchhc
Confidence 0 00010000
Q ss_pred -------------------------------------------------------cCCCcCC------------------
Q psy2393 173 -------------------------------------------------------CCSSIYT------------------ 179 (576)
Q Consensus 173 -------------------------------------------------------~cg~~~~------------------ 179 (576)
.||.+--
T Consensus 337 ~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~~~~~G~~v~ear~~i~~~L~~~g 416 (938)
T TIGR00395 337 DIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGMKVSEAKEKVKADLIDAG 416 (938)
T ss_pred ccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCCcccCCcCHHHhHHHHHHHHHHCC
Confidence 0001000
Q ss_pred ----CCcc-CCCcccCCCCccEEe-eecceeEecCchhhHHHHHHhhhcCC-CCChhHHHHHHHHHhhcCCCCCcccccC
Q psy2393 180 ----PTKL-INPYSILSGTKPIIK-SSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKEWLEKDNKFNDWDISRD 252 (576)
Q Consensus 180 ----~~~l-~~p~~~~~~~~~~~~-~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~dw~isR~ 252 (576)
..+. ..|+|+|||++++++ .++|||++++++++++.+.++ +++. ++|+..++.+.+|++ +++|||||||
T Consensus 417 ~~~~~~~~~~~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~-l~~~~~~P~~~~~~~~~~l~---~l~DW~ISRq 492 (938)
T TIGR00395 417 LADVMYEFSESPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHEC-LEGMRIIPEEVKNAFEGKID---WLKDWACCRR 492 (938)
T ss_pred CceEeeecCCCCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHH-HhcCEEeCHHHHHHHHHHHh---hhhhcccccc
Confidence 0011 237899999999998 999999999444799999999 7766 678889999999998 8999999999
Q ss_pred CCCCCeecCCCC--------CcEEEEEeecccchhhhcchhhh------------hCCCC--Ccccc------ccccccc
Q psy2393 253 APYFGIKIPNTL--------EKYFYVWLDAPIGYLASLKNFFE------------KGGPK--KKYNE------LRNFDEF 304 (576)
Q Consensus 253 ~~~WG~~iP~~~--------~~~~~vw~d~~~~~~~~~~~~~~------------~~g~~--~~~~~------~~~~~~~ 304 (576)
+ +||+|+|.++ +.++|+|+++...|+...+.-.. ..|.. +.++. ..+|+.|
T Consensus 493 r-~WGtpIP~d~~~~ieslsdstiY~~~~~i~~~l~~~~~~~~~l~~ev~D~~~~~~~~~~~t~~~~~~~~~~~~ef~~~ 571 (938)
T TIGR00395 493 Y-GLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYLNKDYYGNEQMTDEFFDYIFLGKGDVKNTNIPLPAIQKLRREFEYW 571 (938)
T ss_pred c-ccCcccceeecEEeeecchhhhhhhhccHHHHhhccCCChHHCCcccCceEEECCCChhhcCCCHHHHHHHHHHHhhc
Confidence 9 9999999643 46788999887777654321000 01100 00111 1356777
Q ss_pred ccCCCcceEEEeeecCcchhHhHHHHHHHhcCC---CCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHH
Q psy2393 305 ISSPNTEQYHFIGKDIFYFHILFWPAILKFSGR---KLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRY 381 (576)
Q Consensus 305 w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~---~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~ 381 (576)
||.+ +|++|+||++||+.+|.. ++.+.. +.|+.+++||||+++|+|||||+||+|+|.+++++ ||+|++||
T Consensus 572 yP~D----~~~~GkDii~~H~~~~i~-~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~~-yGaDalRl 645 (938)
T TIGR00395 572 YPLD----WRISGKDLIPNHLTFYIF-HHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEK-FGADVARL 645 (938)
T ss_pred CCce----EEEEeeccccchHHHHHH-HHHHcCCccccCcEEEEeceEEeCCccccCcCCCCCCHHHHHHH-cChHHHHH
Confidence 8754 999999999999999954 444433 36799999999999999999999999999999999 99999999
Q ss_pred HHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCccc-CChHHHHHHHHHHHHHHHHHHHh
Q psy2393 382 YIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNMKWV-KDNDTFLSKLRVVSSSIQKYYEN 460 (576)
Q Consensus 382 ~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~-~d~~~l~~~l~~~~~~v~~a~~~ 460 (576)
||++.++ ..+|++|+++.+.+..+ .+.+++|++.|+.... +........ .| +|+++.++.+.+.+.++|++
T Consensus 646 ~Ll~~~~-~~~D~~fs~~~~~~~~~--~l~~l~n~~~~~~~~~----~~~~~~~~~~~D-~wlls~l~~~i~~v~~a~e~ 717 (938)
T TIGR00395 646 YIADAAE-TVQDADWKESEVEGTIL--RLERLYEFAEEITKES----NLETGEETSFID-RWLESRMNAAIKETYEAMEN 717 (938)
T ss_pred HHHhcCC-CCCCCCcCHHHHHHHHH--HHHHHHHHHHHHHhhc----ccCCCccCChHH-HHHHHHHHHHHHHHHHHHHc
Confidence 9998754 55889999998877654 3778888877754321 111111122 25 99999999999999999999
Q ss_pred hhHHHHH-HHHHHHHHHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCC
Q psy2393 461 RNFNKVL-YIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNIS 535 (576)
Q Consensus 461 ~~~~~~~-~~l~~~~~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~ 535 (576)
|+++.|+ ..+++|+..+|+|++..++ +.. .++.++++.+++||+|||||+||+||+.||.+
T Consensus 718 ~~~~~Al~~~l~~~~~~~n~Yl~~~~~-----------~~~---~~l~~~l~~~~~LLaP~~P~~aEeiw~~Lg~~ 779 (938)
T TIGR00395 718 FQTRKAVKYALFDLQADVDWYRRRGGV-----------NHK---DVLARYLETWIKLLAPFAPHFAEEMWEEVGNE 779 (938)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCcc-----------hHH---HHHHHHHHHHHHHhcCcccHHHHHHHHHcCCC
Confidence 9999999 7799999889999765321 112 24668999999999999999999999999854
No 29
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=7.2e-70 Score=554.46 Aligned_cols=316 Identities=34% Similarity=0.611 Sum_probs=289.1
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 92 (576)
+++|++|||||||++||||+++++++|+++||+|++| ++|.+++|+||||+||+.+|+++|++|+++++.+.+.|
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G-----~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~ 75 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRG-----YDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIF 75 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCC-----CcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCccc
Q psy2393 93 KKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCE 172 (576)
Q Consensus 93 ~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~ 172 (576)
+++|++|||++|.+++|+++.|...++++|++|. ++|++|+++..++||+.|+++|+
T Consensus 76 ~~~l~~LgI~~D~~~~tt~~~~~~~v~~i~~~L~-ekG~iY~~~~~~~yc~~~~~~l~---------------------- 132 (319)
T cd00814 76 KDLFKWLNISFDYFIRTTSPRHKEIVQEFFKKLY-ENGYIYEGEYEGLYCVSCERFLP---------------------- 132 (319)
T ss_pred HHHHHHcCCcCCCCeeCCCHHHHHHHHHHHHHHH-HCCCEEeeeeeeeECCCCCcEee----------------------
Confidence 9999999999999999999999999999999999 99999999999999988887765
Q ss_pred cCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC---CCChhHHHHHHHHHhhcCCCCCccc
Q psy2393 173 CCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK---RLQPEIVNKIKEWLEKDNKFNDWDI 249 (576)
Q Consensus 173 ~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~dw~i 249 (576)
+++.++||||+| +++++.+.++ +++. .+|+..++.+.+|++ ++++||||
T Consensus 133 -----------------------e~~~~~~~ff~l--~~~~~~l~~~-~~~~~~~~~p~~~~~~~~~~l~--~~l~d~~i 184 (319)
T cd00814 133 -----------------------EWREEEHYFFRL--SKFQDRLLEW-LEKNPDFIWPENARNEVLSWLK--EGLKDLSI 184 (319)
T ss_pred -----------------------EEEeeeeEEEEh--HHHHHHHHHH-HHhCCccCCCHHHHHHHHHHHh--CCCcccCC
Confidence 678899999999 9999999999 6554 589999999999999 78999999
Q ss_pred ccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHH
Q psy2393 250 SRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWP 329 (576)
Q Consensus 250 sR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~ 329 (576)
||+...||+|+|.++++++|||||++++|++..+.+....|. ..+|.+.....+|++|+|+++||+++|+
T Consensus 185 sR~~~~WGipvp~~~~~~~yvWfda~~~y~~~~~~~~~~~~~----------~~~~~~~~~~~v~~~G~D~~~fh~~~~p 254 (319)
T cd00814 185 TRDLFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEEWGN----------SWWWKDGWPELVHFIGKDIIRFHAIYWP 254 (319)
T ss_pred CccCcccCeeCCCCCCcEEEEehhhHHHHHHHcccccccccc----------hhhhhcCCCceEEEEeechhhhhHHHHH
Confidence 999768999999999999999999999999887755433321 0234333345699999999999999999
Q ss_pred HHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCccc
Q psy2393 330 AILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDF 396 (576)
Q Consensus 330 a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~f 396 (576)
|++++++.++|+.+++|||++++|+|||||+||+|++.++++. ||+|++|||+++..|.. +|.+|
T Consensus 255 a~l~~~~~~~~~~~~~~~~~~~~g~kmSkS~gn~i~~~~~l~~-~~~d~~R~~l~~~~~~~-~d~~f 319 (319)
T cd00814 255 AMLLGAGLPLPTRIVAHGYLTVEGKKMSKSRGNVVDPDDLLER-YGADALRYYLLRERPEG-KDSDF 319 (319)
T ss_pred HHHHhCCCCCCcEeeeeeeEEECCeeecccCCcccCHHHHHHH-cCchHHHHHHHhcCCCC-CCCCC
Confidence 9999999988999999999999999999999999999999999 99999999999987765 55565
No 30
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=3.9e-69 Score=560.43 Aligned_cols=323 Identities=23% Similarity=0.336 Sum_probs=287.2
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc---------CCCH-
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA---------GMTP- 81 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~---------g~~~- 81 (576)
++|+|++|||||||+|||||+++++++|+++||+|++| ++|.|++|+|+||+||+..|++. ++++
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G-----~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~ 75 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKG-----YNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGRE 75 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcC-----CcccccCccCCCCChHHHHHHHHhcccccchhcCCHH
Confidence 47999999999999999999999999999999999999 99999999999999999999874 3443
Q ss_pred ------HHHHHHHHHHHHHHHhhcCcccc--ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccc
Q psy2393 82 ------KEFINNISSNRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRY 153 (576)
Q Consensus 82 ------~~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~ 153 (576)
+++++++.+++++++++|||++| ++++|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+++|+++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~-~~G~iy~~~~~~~yc~~~~t~l~~~e 154 (382)
T cd00817 76 EFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLY-EKGLIYRDNRLVNWCPKLRTAISDIE 154 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHH-HCCCEEeeeeEEeecCCcCCCCCcch
Confidence 46899999999999999999766 9999999999999999999999 99999999999999999999999765
Q ss_pred eeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcC--C-CCChhH
Q psy2393 154 IKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD--K-RLQPEI 230 (576)
Q Consensus 154 v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~--~-~~~~~~ 230 (576)
| |++||++++++.++||||+| +++++.+.++ +++ . ++|+..
T Consensus 155 v---------------------------------c~~cg~~~~~~~~~qwf~~l--~~~~~~l~~~-~~~~~~~~~P~~~ 198 (382)
T cd00817 155 V---------------------------------CSRSGDVIEPLLKPQWFVKV--KDLAKKALEA-VKEGDIKFVPERM 198 (382)
T ss_pred h---------------------------------cccCCCeEEEEecCeeEEeh--HHHHHHHHHH-HhcCCcEEEChHH
Confidence 5 67889999999999999999 9999999999 766 3 478889
Q ss_pred HHHHHHHHhhcCCCCCcccccCCCCCCeecCC----C--------------------------------CCcEEEEEeec
Q psy2393 231 VNKIKEWLEKDNKFNDWDISRDAPYFGIKIPN----T--------------------------------LEKYFYVWLDA 274 (576)
Q Consensus 231 ~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~----~--------------------------------~~~~~~vw~d~ 274 (576)
++.+.+||+ +++||||||++ +||+|+|. + +++++||||||
T Consensus 199 ~~~~~~~l~---~l~Dw~ISR~~-~WGipvP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dvWfds 274 (382)
T cd00817 199 EKRYENWLE---NIRDWCISRQL-WWGHRIPAWYCKDGGHWVVAREEDEAIDKAAPEACVPCGGEELKQDEDVLDTWFSS 274 (382)
T ss_pred HHHHHHHHh---hCccceeeecc-ccCCccceEEeCCCCcEEecchhHHHHHHhccccccCCCccCeeECCceeeeeecC
Confidence 999999999 59999999999 99999996 3 37899999999
Q ss_pred ccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhcCCCCC-cEEeeeccEEe-C
Q psy2393 275 PIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLP-NNIFVHGFMTI-N 352 (576)
Q Consensus 275 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~~~p-~~~~~~g~v~~-~ 352 (576)
.++|++..+. ... ...|+.+||.+ +|++|+||++||+.++.++..++....| ..+++||+|+. +
T Consensus 275 ~~~~~~~~~~-~~~---------~~~~~~~~p~d----~~~~G~D~~~~h~~~~l~~~~~~~g~~p~~~v~~hg~v~~~~ 340 (382)
T cd00817 275 SLWPFSTLGW-PEE---------TKDLKKFYPTS----LLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVYLHGLVRDED 340 (382)
T ss_pred CCcHHHHhCC-CCc---------chhHhhcCCCC----eeeeecCcCchHHHHHHHHHHHhhCCCchHHeEeeeeEECCC
Confidence 9999987642 111 13578889764 9999999999999998887776654455 89999999995 9
Q ss_pred CccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCccc
Q psy2393 353 GKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDF 396 (576)
Q Consensus 353 g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~f 396 (576)
|+|||||+||+|+++|++++ +|+|++|||+++.++.+ .|.+|
T Consensus 341 g~KMSKS~Gn~v~~~dll~~-~g~Da~R~~ll~~~~~~-~D~~f 382 (382)
T cd00817 341 GRKMSKSLGNVIDPLDVIDG-YGADALRFTLASAATQG-RDINL 382 (382)
T ss_pred CCCccccCCCCCCHHHHHHh-cCcHHHHHHHHhCCCcc-CCCCC
Confidence 99999999999999999999 99999999999976554 55554
No 31
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=2.6e-68 Score=600.09 Aligned_cols=456 Identities=22% Similarity=0.277 Sum_probs=340.8
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHH
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~ 88 (576)
+++++++|+++||||||.|||||+++++++|+++||+||+| ++|.|++|||+||+||+.+|.+.|.+|.++++++
T Consensus 26 ~~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G-----~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~ 100 (842)
T TIGR00396 26 SNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKG-----YNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYEN 100 (842)
T ss_pred CCCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcC-----CceeccCCcCCCChHHHHHHHHcCCCHHHHHHHH
Confidence 45677999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCccc--cccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCC
Q psy2393 89 SSNRKKYLDGFYIKF--DNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQ 166 (576)
Q Consensus 89 ~~~~~~~l~~lgi~~--d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~ 166 (576)
.+.++++|++||+++ |++++|++++|.+.++++|.+|+ ++|+||++..+++|||.|+|+|++++|.
T Consensus 101 ~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~-~kGliy~~~~~v~wcp~~~t~La~~ev~----------- 168 (842)
T TIGR00396 101 IANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELF-EKGLAYVKEADVNWCPNDGTVLANEQVD----------- 168 (842)
T ss_pred HHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHH-HCCCeEeeccceEEeCCCCCCccHHHHh-----------
Confidence 999999999999854 68999999999999999999999 9999999999999999999999987762
Q ss_pred CCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC-CCChhHHH-------------
Q psy2393 167 YGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVN------------- 232 (576)
Q Consensus 167 ~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~------------- 232 (576)
.+++||+||.+++.+..+||||++ +++++++.+. ++.. .||+++++
T Consensus 169 -----------------~~g~~~~~g~~v~~~~~~~~f~~i--~~~~~~l~~~-l~~~~~wp~~v~~~q~~wig~s~g~~ 228 (842)
T TIGR00396 169 -----------------SDGRSWRGGTPVEKKELKQWFLKI--TAYAEELLND-LEELDHWPESVKEMQRNWIGKSEGVE 228 (842)
T ss_pred -----------------hcCccccCCCcceEeecceeEEeh--hhhHHHHHHH-HhhhccccHHHHHHHHhcccccceEE
Confidence 124678899999999999999999 8888776654 2111 12211111
Q ss_pred --------------------------------------------------------------------------------
Q psy2393 233 -------------------------------------------------------------------------------- 232 (576)
Q Consensus 233 -------------------------------------------------------------------------------- 232 (576)
T Consensus 229 i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 308 (842)
T TIGR00396 229 ITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAENNPKVAAFIKKILQKTTTERTKETKLKKGVFTGIKAIH 308 (842)
T ss_pred EEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhcchHHHHHHHHHHhccCchhhhhhhcccccEecCCEEEC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy2393 233 -------------------------------------------------------------------------------- 232 (576)
Q Consensus 233 -------------------------------------------------------------------------------- 232 (576)
T Consensus 309 P~~~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~G~~~~~~~~~Gl~~~~ 388 (842)
T TIGR00396 309 PLTGEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPAGKNLKTQAFTEDGVLVNSGEFNGLNSSE 388 (842)
T ss_pred CCCCCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCcccccccccccCCceEecchhcCCCCHHH
Confidence
Q ss_pred ---HHHHHHhh--------cCCCCCcccccCCCCCCeecCCC---CCcEEEEEeecccc--------------hhhhcch
Q psy2393 233 ---KIKEWLEK--------DNKFNDWDISRDAPYFGIKIPNT---LEKYFYVWLDAPIG--------------YLASLKN 284 (576)
Q Consensus 233 ---~~~~~l~~--------~~~~~dw~isR~~~~WG~~iP~~---~~~~~~vw~d~~~~--------------~~~~~~~ 284 (576)
.+.++|++ ..+++|||||||| +||+|||.. +...+.+--+.+.. .+.....
T Consensus 389 A~~~Ii~~L~~~g~~~~~v~yrlrDW~ISRQR-yWG~PIPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~ 467 (842)
T TIGR00396 389 AREAIIAMLEKEGKGKRKVNYRLRDWLFSRQR-YWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQE 467 (842)
T ss_pred HHHHHHHHHHHcCCCCceEEeecccceeeccc-ccCCceEEEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhhhh
Confidence 11111111 1236799999999 999999961 11111000000000 0000000
Q ss_pred h----hhhCCCCCccccc-----------------------------ccccccccCCCcceEEEeeecCcchh---HhHH
Q psy2393 285 F----FEKGGPKKKYNEL-----------------------------RNFDEFISSPNTEQYHFIGKDIFYFH---ILFW 328 (576)
Q Consensus 285 ~----~~~~g~~~~~~~~-----------------------------~~~~~~w~~~~~~~i~~~G~D~~~fh---~~~~ 328 (576)
+ |..+|. .+.++ ..++.|+|.+ ++++|.||+-.| +.+|
T Consensus 468 ~~~~~cp~cg~--~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~PvD----~yi~G~dhailHLlyaRf~ 541 (842)
T TIGR00396 468 WVNVTCPSCGK--PALRETDTMDTFAGSSWYYLRYLDPKNTDQPFDKEKAEYWLPVD----LYIGGAEHAILHLLYARFW 541 (842)
T ss_pred hhcCcCccCCC--CcEeCCCCCCCcccCCHHHHHhhCCCCcCCCcChHHHhccCCCc----EeeccHHHHHHHHHHHHHH
Confidence 0 111121 11111 1222222433 889999996444 3446
Q ss_pred HHHHHhcC---CCCC-cEEeeeccEEe-----CCc---------------------------cccccCCCccChhHHhhc
Q psy2393 329 PAILKFSG---RKLP-NNIFVHGFMTI-----NGK---------------------------KMSKSNKIGISPLYYLKI 372 (576)
Q Consensus 329 ~a~l~~~~---~~~p-~~~~~~g~v~~-----~g~---------------------------KMSKS~gn~i~~~dll~~ 372 (576)
...|...+ ...| +.+++||||+. +|+ |||||+||+|+|.+++++
T Consensus 542 ~~~l~~~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~~ 621 (842)
T TIGR00396 542 HKFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKK 621 (842)
T ss_pred HHHHHhccccCCCccHHHHhccceEEeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHHHHH
Confidence 55555443 2455 89999999998 788 999999999999999999
Q ss_pred CCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCC-Cccc-CChHHHHHHHHHH
Q psy2393 373 GMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLN-MKWV-KDNDTFLSKLRVV 450 (576)
Q Consensus 373 g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~-~~~~-~d~~~l~~~l~~~ 450 (576)
||+|++|||+++.+ +...+++|+.+.+... ..++++++|++.++...+.. .. .++ ..+. .| +|++++++.+
T Consensus 622 -ygaDalRl~~l~~~-~~~~d~~~~~~~l~~~--~~~l~kl~~~~~~~~~~~~~-~~-~~~~~~l~~~d-~~il~~l~~~ 694 (842)
T TIGR00396 622 -HGADALRLYIMFMG-PIAASLEWNDSGLEGA--RRFLDRVWNLFYNILGELDG-KT-YLTPTILEEAQ-KELRRDVHKF 694 (842)
T ss_pred -cCchHHHHHHHhcC-CcCCCCccCHHHHHHH--HHHHHHHHHHHHHHHhhhcc-cc-cCCcccCCHHH-HHHHHHHHHH
Confidence 99999999999754 3558899999887544 55788999998665333211 00 011 1122 25 9999999999
Q ss_pred HHHHHHHHHhhh-HHHHHHHHHHHHHHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Q psy2393 451 SSSIQKYYENRN-FNKVLYIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVE 529 (576)
Q Consensus 451 ~~~v~~a~~~~~-~~~~~~~l~~~~~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~ 529 (576)
.+.+.++|++|. |+.|++.+++|++...++. + . .++..++..+++||+||+||+|||||
T Consensus 695 i~~v~~~~e~y~~fn~ai~~l~~f~n~L~~~~---~--------------~---~~l~~~l~~ll~lLaPf~PhiaEElW 754 (842)
T TIGR00396 695 LKKVTEDLEKLESFNTAISAMMILLNALYKAK---K--------------D---ALYLEYLKGFLTVLSPFAPHLAEELW 754 (842)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhh---h--------------H---HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 999999999988 9999999999986444321 0 0 24557888999999999999999999
Q ss_pred HHcCCC
Q psy2393 530 TFLNIS 535 (576)
Q Consensus 530 ~~L~~~ 535 (576)
+.|+.+
T Consensus 755 ~~l~~~ 760 (842)
T TIGR00396 755 EKLGSE 760 (842)
T ss_pred HHhCCC
Confidence 999843
No 32
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=6.4e-68 Score=596.13 Aligned_cols=445 Identities=21% Similarity=0.301 Sum_probs=339.7
Q ss_pred CCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHH
Q psy2393 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISS 90 (576)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 90 (576)
+++++|+++||||||.|||||+++++++|+++||+||+| ++|.|++|||+||+||+.+|.+.|.+|.++++++.+
T Consensus 31 ~~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G-----~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~ 105 (805)
T PRK00390 31 SKKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQG-----YNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIA 105 (805)
T ss_pred CCCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcC-----CcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 347999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcccc--ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCC
Q psy2393 91 NRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYG 168 (576)
Q Consensus 91 ~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g 168 (576)
.|+++|++||+++| ++++|++++|.+.++++|.+|+ ++|+||++..+++|||.|+|+|+++||+
T Consensus 106 ~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~-~~Gliy~~~~~v~wcp~~~t~La~~ev~------------- 171 (805)
T PRK00390 106 NMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLY-EKGLAYRKESPVNWCPVDGTVLANEQVI------------- 171 (805)
T ss_pred HHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHH-HCCCEEEecCEEEecCCcCCCCCHHHhh-------------
Confidence 99999999999555 8999999999999999999999 9999999999999999999999987663
Q ss_pred CccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC-CCChhHH----------------
Q psy2393 169 DFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIV---------------- 231 (576)
Q Consensus 169 ~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~---------------- 231 (576)
+++|++||.+++.+..+||||++ +++++++.+. ++.. .||++++
T Consensus 172 ----------------~~~~~~~~~~~~~~~~~~~f~~i--~~~~~~L~~~-l~~~~~w~~~v~~~~~~wig~~~~~~i~ 232 (805)
T PRK00390 172 ----------------DGRCWRCGAPVEKKELRQWFLKI--TDYADELLDD-LDKLEDWPEKVKTMQRNWIGRSEGAEVT 232 (805)
T ss_pred ----------------CCeecccCCeeEEEecceeeEec--chhHHHHHHH-HHhhccCcHHHHHHHHhhccccceEEEE
Confidence 35577888899999999999999 8887766554 2110 1111111
Q ss_pred --------------------------------------------------------------------------------
Q psy2393 232 -------------------------------------------------------------------------------- 231 (576)
Q Consensus 232 -------------------------------------------------------------------------------- 231 (576)
T Consensus 233 f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~g~~~~~P~ 312 (805)
T PRK00390 233 FKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQNPAVAAFIEECKKKSDLERQTETKEKTGVFTGLYAIHPL 312 (805)
T ss_pred EEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhhcchHHHHHHHHHHhhhcchhhhhcccceeeeecCcEEECCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy2393 232 -------------------------------------------------------------------------------- 231 (576)
Q Consensus 232 -------------------------------------------------------------------------------- 231 (576)
T Consensus 313 ~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~~~~~~Gl~~~~ 392 (805)
T PRK00390 313 TGEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDEDISEEAYTGDGVLINSGELDGLDSEE 392 (805)
T ss_pred CCCeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCCCCcccccccccccCCeEEEeccccCCCCHHH
Confidence
Q ss_pred --HHHHHHHhh--------cCCCCCcccccCCCCCCeecCC----CCC--------------------------------
Q psy2393 232 --NKIKEWLEK--------DNKFNDWDISRDAPYFGIKIPN----TLE-------------------------------- 265 (576)
Q Consensus 232 --~~~~~~l~~--------~~~~~dw~isR~~~~WG~~iP~----~~~-------------------------------- 265 (576)
+.+.+.|++ ..+++|||||||| +||+|||. .++
T Consensus 393 a~~~Ii~~L~~~g~~~~~v~~~l~DW~ISRQR-~WG~PIPi~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 471 (805)
T PRK00390 393 AKEAIIAWLEEKGLGKRKVNYRLRDWGISRQR-YWGEPIPIIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPLAKHPEW 471 (805)
T ss_pred HHHHHHHHHHHcCCCCCceEEECCCccccccc-cCCCceeEEEECCCCceeCchHhhhhhhhhhcccCCCCChhhhchhh
Confidence 111111111 0125699999999 99999993 111
Q ss_pred ----------------cEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhH---h
Q psy2393 266 ----------------KYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHI---L 326 (576)
Q Consensus 266 ----------------~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~---~ 326 (576)
.++++|||+. .|...... ....+. .-....++.|+|.+ ++++|.||+..|. .
T Consensus 472 ~~~~~~~~g~~~~re~Dv~DtwfdSs-w~~~~~~~-p~~~~~---~~~~~~~~~~~P~D----ly~~G~D~~i~hL~y~R 542 (805)
T PRK00390 472 VNVTCPKCGKPARRETDTMDTFVGSS-WYYLRYTD-PHNDEA---PFDKEAANYWLPVD----QYIGGIEHAVLHLLYAR 542 (805)
T ss_pred hCCCccccCCCceeCCcccccccccc-cHHHHhcC-cccccC---cCChHHhhCcCCCc----EEeccHHHHHHHHHHHH
Confidence 2234455543 22211100 000000 00012344444543 8999999974443 3
Q ss_pred HHHHHHHhcC---CCCC-cEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHh
Q psy2393 327 FWPAILKFSG---RKLP-NNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFI 402 (576)
Q Consensus 327 ~~~a~l~~~~---~~~p-~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~ 402 (576)
+|.+.+...+ ...| +.+++|||| |||||+||+|+|.+++++ ||+|++|||+++.+ ++..|++|+.+.+.
T Consensus 543 f~~~~l~~~~~~~~~~Pfk~v~~~G~v-----KMSKS~GN~i~p~~~i~~-ygaD~lRl~l~~~~-~~~~d~~~s~~~l~ 615 (805)
T PRK00390 543 FFTKVLRDLGLVSSDEPFKKLLTQGMV-----KMSKSKGNVVDPDDIIEK-YGADTARLFEMFAG-PPEKDLEWSDSGVE 615 (805)
T ss_pred HHHHHHHHhhcccCCcchhhheecCcE-----EeCCCCCCCCCHHHHHHH-cChHHHHHHHHhcC-CccCCcccCHHHHH
Confidence 4555555443 3455 899999999 999999999999999999 99999999999853 46688999998776
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCcc-cCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q psy2393 403 SCVNSDLIGKYINIASRSSSFIEKYFKGYLNMKW-VKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFF 481 (576)
Q Consensus 403 ~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~-~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~ 481 (576)
.. ..++++++|++.... .... ...... ..| +|++++++.+.+.+.++|++|+|+.|++.|++|+...++|+
T Consensus 616 ~~--~~~l~kl~~~~~~~~----~~~~-~~~~~~~~~D-~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~n~lsk~~ 687 (805)
T PRK00390 616 GA--YRFLQRVWRLVVDAK----GEAG-ALDVAALSED-KELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKAE 687 (805)
T ss_pred HH--HHHHHHHHHHHHHhh----hccc-ccCcccChhh-HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 54 456888888875421 1111 111111 236 99999999999999999999999999999999998777776
Q ss_pred hhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCC
Q psy2393 482 DQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNIS 535 (576)
Q Consensus 482 ~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~ 535 (576)
+ ..++ .++..++..++++|+||+||+||+||+.|+.+
T Consensus 688 ~--------------~~~~---~~l~~~l~~l~~lLaPf~P~iaEElw~~L~~~ 724 (805)
T PRK00390 688 D--------------EQDK---AVLREALEILVRLLAPFAPHLAEELWEKLGHE 724 (805)
T ss_pred H--------------HHHH---HHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC
Confidence 1 1122 35567899999999999999999999999854
No 33
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.7e-67 Score=598.65 Aligned_cols=467 Identities=19% Similarity=0.254 Sum_probs=357.1
Q ss_pred ccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc---------------CC---------CHH
Q psy2393 27 LHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA---------------GM---------TPK 82 (576)
Q Consensus 27 lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~---------------g~---------~~~ 82 (576)
|||||+++++++|+++||+||+| ++|+|++|||+||+||+..|++. |+ +|.
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G-----~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~ 75 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRG-----YNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPE 75 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCC-----CcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHH
Confidence 79999999999999999999999 99999999999999999998642 33 467
Q ss_pred HHHHHHHHHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceecc---
Q psy2393 83 EFINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGE--- 157 (576)
Q Consensus 83 ~~~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~--- 157 (576)
+++++|.+.++++|++||+ +|++.+.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|.|+++++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~-ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~ 154 (897)
T PRK12300 76 YIVEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLK-EKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEP 154 (897)
T ss_pred HHHHHhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHH-HCCCEecCCEeeeeCCCCCCCchHHHHhcCCCC
Confidence 7899999999999999998 6668899999999999999999999 999999999999999999999999887420
Q ss_pred -----------------------CC-------------CCC----------------------CC-C-------------
Q psy2393 158 -----------------------CP-------------ICN----------------------AK-D------------- 165 (576)
Q Consensus 158 -----------------------~p-------------~c~----------------------~~-~------------- 165 (576)
.| ... .. .
T Consensus 155 ~~~~~~~ikf~~~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l 234 (897)
T PRK12300 155 EIVEYTLIKFEESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRDVEIIEEIKGSEL 234 (897)
T ss_pred CcceEEEEEEeCCCceEEEEEECCcchhccceEEEECCCCcEEEEEECCEEEEEeHHHHHHHhcCcCCceEEEEeehHHh
Confidence 01 000 00 0
Q ss_pred ------------------------CCCC----------------------------------ccc---------------
Q psy2393 166 ------------------------QYGD----------------------------------FCE--------------- 172 (576)
Q Consensus 166 ------------------------~~g~----------------------------------~c~--------------- 172 (576)
.+|. .|+
T Consensus 235 ~G~~~~~Pl~~~~ipil~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~ 314 (897)
T PRK12300 235 IGKKVKNPVTGKEVPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEK 314 (897)
T ss_pred cCCEEECCCCCCeEEEeccCeeecCCCeeeEEeCCCCCHHHHHHHHHhccccccccccCCcceEecCCcCcccHHHHHHH
Confidence 0000 010
Q ss_pred -----------------------cCCCcCCC-C----------------------------cc-CCCcccCCCCccEEee
Q psy2393 173 -----------------------CCSSIYTP-T----------------------------KL-INPYSILSGTKPIIKS 199 (576)
Q Consensus 173 -----------------------~cg~~~~~-~----------------------------~l-~~p~~~~~~~~~~~~~ 199 (576)
..|++... . ++ ..|+|||||++++.+.
T Consensus 315 ~~~~~~~d~~l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~~~~~~R~~~~~i~~~ 394 (897)
T PRK12300 315 LGIKSQEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEFSNRPVYCRCGTECVVKV 394 (897)
T ss_pred hCCCCccchhHHHHHHHhhhccccceEEeecccCcCCeEHHHHHHHHHHHHHHCCCeEEEEecCCCCcCcCCCCEEEEEe
Confidence 01211110 0 00 1388999999999986
Q ss_pred -ecceeEecCchhhHHHHHHhhhcCC-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCC--------CcEEE
Q psy2393 200 -SKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTL--------EKYFY 269 (576)
Q Consensus 200 -~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~--------~~~~~ 269 (576)
++|||++++++++++.+.++ +++. ++|+..++++.+||+ +++|||||||+ +||+|||.++ +.++|
T Consensus 395 ~~~QWFi~~~~~~~k~~~~~~-~~~~~~~P~~~~~~~~~~l~---~l~DW~ISRqr-~WGtpiP~~~~w~~esl~ds~iY 469 (897)
T PRK12300 395 VKDQWFIDYSDPEWKELAHKA-LDNMEIIPEEYRKEFENTID---WLKDRACARRR-GLGTRLPWDEEWIIESLSDSTIY 469 (897)
T ss_pred cCCceEEEcCcHHHHHHHHHH-HccCEEECHHHHHHHHHHHh---hhhhcceeecc-ccCCcCCccCCEEeeeccccchh
Confidence 59999999544899999999 7776 678889999999998 89999999999 9999999642 34566
Q ss_pred EEeecccchhhhcch----h--------hhhCCCCCcc------cc------cccccccccCCCcceEEEeeecCcchhH
Q psy2393 270 VWLDAPIGYLASLKN----F--------FEKGGPKKKY------NE------LRNFDEFISSPNTEQYHFIGKDIFYFHI 325 (576)
Q Consensus 270 vw~d~~~~~~~~~~~----~--------~~~~g~~~~~------~~------~~~~~~~w~~~~~~~i~~~G~D~~~fh~ 325 (576)
+|+++...++...+. + .-..|...+. +. ..+|+.|||.+ ++++|+||++||.
T Consensus 470 ~~~~~i~~~l~~~g~~~~~l~~~~~D~~~~~~~~~~~~~~~sg~p~~~~~~~~~~f~~~~P~D----~~~~GkDii~~Hl 545 (897)
T PRK12300 470 MAYYTIAHKIREYGIKPEQLTPEFFDYVFLGKGDPEEVSKKTGIPKEILEEMREEFLYWYPVD----WRHSGKDLIPNHL 545 (897)
T ss_pred hhHHHHHHHHHHcCCChHHCChhhCceEEeCCCccccCchhcCCCHHHHHHHHHHHhccCCce----EEEeeeccCccHH
Confidence 776655444442110 0 0000100000 00 13456566654 9999999999999
Q ss_pred hHHHHHHHhcC---CCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHh
Q psy2393 326 LFWPAILKFSG---RKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFI 402 (576)
Q Consensus 326 ~~~~a~l~~~~---~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~ 402 (576)
++|. ++..+. .+.|+.+++||||+++|+|||||+||+|+|.+++++ ||+|++|||+++.++ ...|++|+.+.+.
T Consensus 546 ~~~~-~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~~-yGaDalRl~L~~~~~-~~~D~~fs~~~v~ 622 (897)
T PRK12300 546 TFFI-FNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEE-YGADVVRLYLTSSAE-LLQDADWREKEVE 622 (897)
T ss_pred HHHH-HHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHHH-cChHHHHHHHHhCCC-CCCCCccCHHHHH
Confidence 9985 444432 256799999999999999999999999999999999 999999999998654 4588999998764
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHh
Q psy2393 403 SCVNSDLIGKYINIASRSSSFIEKYFKGYLNMKWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVI-EQTNFINIF 480 (576)
Q Consensus 403 ~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~-~~~~~~n~y 480 (576)
.. .+++++++|++.++ .....+.... .| +|+++.++.+.+.+.++|++|+++.|++.++ .+.+.+|+|
T Consensus 623 ~~--~~~l~r~~~~~~~~-------~~~~~~~~~~~~D-~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~~~n~Y 692 (897)
T PRK12300 623 SV--RRQLERFYELAKEL-------IEIGGEEELRFID-KWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLNDLRWY 692 (897)
T ss_pred HH--HHHHHHHHHHHHHH-------hcCCCccccCHhH-HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 44 33455555554332 2111111122 25 9999999999999999999999999998886 556889999
Q ss_pred hhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCC
Q psy2393 481 FDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNIS 535 (576)
Q Consensus 481 ~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~ 535 (576)
++.+++ .+..++.++++.++++|+||+||+||+||+.||.+
T Consensus 693 i~~~k~--------------~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~~ 733 (897)
T PRK12300 693 LRRVGE--------------ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGGE 733 (897)
T ss_pred HHhcch--------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC
Confidence 988763 23456778999999999999999999999999854
No 34
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.5e-67 Score=592.31 Aligned_cols=460 Identities=21% Similarity=0.267 Sum_probs=337.3
Q ss_pred CCCCeEEEEcCCCCCCCc-ccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHH
Q psy2393 9 KDVRRIFVTTALPYANGE-LHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINN 87 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~-lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~ 87 (576)
+++++|+|+++||||||. |||||+++++++|+++||+||+| ++|+|++|||+||+||+.+|.+.|.+|.+++++
T Consensus 107 ~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G-----~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~ 181 (963)
T PLN02563 107 TSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQG-----YNVLHPMGWDAFGLPAEQYAIETGTHPKITTLK 181 (963)
T ss_pred CCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcC-----CeecccccccccCcHHHHHHHHcCCChHHhHHH
Confidence 456789999999999996 99999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCccc--cccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCC
Q psy2393 88 ISSNRKKYLDGFYIKF--DNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKD 165 (576)
Q Consensus 88 ~~~~~~~~l~~lgi~~--d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~ 165 (576)
+++.++++|++||+++ |++++|++++|.+.++++|.+|+ ++|+||++..+++|||.|+|+|++.
T Consensus 182 ~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~-~~GliY~~~~~v~wcp~~~T~La~~------------- 247 (963)
T PLN02563 182 NIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLL-KRGLAYQAEVPVNWCPALGTVLANE------------- 247 (963)
T ss_pred HHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHH-HCCCEEeeeeeeeecCCcCCCCCHH-------------
Confidence 9999999999999855 58999999999999999999999 9999999999999988888877754
Q ss_pred CCCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHH--------
Q psy2393 166 QYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEW-------- 237 (576)
Q Consensus 166 ~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------- 237 (576)
|+++++|++||++++.+...||||++ ++++++++++ ++...||+.+++..++|
T Consensus 248 ----------------Ev~~~~~~~~~~~~~~~~~~q~f~~i--t~ya~~L~~~-l~~~~wp~~v~~~q~nwiG~s~g~~ 308 (963)
T PLN02563 248 ----------------EVVDGLSERGGHPVIRKPMRQWMLKI--TAYADRLLED-LDDLDWPESIKEMQRNWIGRSEGAE 308 (963)
T ss_pred ----------------HhhcCCCcCCCCceEEEecceeEEec--chhHHHHHHh-hhhcCCCHHHHHHHHHhccccceEE
Confidence 55678899999999999999999999 9999988877 32211222221111111
Q ss_pred ---------------------------------------------------------Hh---------------------
Q psy2393 238 ---------------------------------------------------------LE--------------------- 239 (576)
Q Consensus 238 ---------------------------------------------------------l~--------------------- 239 (576)
+.
T Consensus 309 i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~k~g~~ 388 (963)
T PLN02563 309 LDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLERTELQKEKTGVF 388 (963)
T ss_pred EEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhHHhhhhccceecccc
Confidence 10
Q ss_pred -h------------------------------------------------------c---------------C-------
Q psy2393 240 -K------------------------------------------------------D---------------N------- 242 (576)
Q Consensus 240 -~------------------------------------------------------~---------------~------- 242 (576)
. . .
T Consensus 389 ~g~~~~~P~~~~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d~~~~~~~~~y~~~G~l~ns~ 468 (963)
T PLN02563 389 TGSYAINPATGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKAYTGEGVIVNSS 468 (963)
T ss_pred cCcEEeccCCCCeeEEEEecccCCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeccCccccccccccccCceeEecCC
Confidence 0 1 0
Q ss_pred ----------------------------------CCCCcccccCCCCCCeecCC----CCCcEEEEEeeccc--------
Q psy2393 243 ----------------------------------KFNDWDISRDAPYFGIKIPN----TLEKYFYVWLDAPI-------- 276 (576)
Q Consensus 243 ----------------------------------~~~dw~isR~~~~WG~~iP~----~~~~~~~vw~d~~~-------- 276 (576)
.++|||||||| +||+|||. .++..+.+=-+.+.
T Consensus 469 ~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~~v~y~lrDW~ISRQR-yWG~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~ 547 (963)
T PLN02563 469 SSGLDINGLSSKEAAKKVIEWLEETGNGKKKVNYKLRDWLFARQR-YWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDD 547 (963)
T ss_pred CcccccCCcCHHHHHHHHHHHHHhCCCCCCeeEecCCCceEeeec-ccCCceEEEEEcCCCcEEecchHhCcccchhhhh
Confidence 16799999999 99999996 22333322100000
Q ss_pred --------chhhhcchh----hhhCCCCCcccccc----------------------------cccccc-cCCCcceEEE
Q psy2393 277 --------GYLASLKNF----FEKGGPKKKYNELR----------------------------NFDEFI-SSPNTEQYHF 315 (576)
Q Consensus 277 --------~~~~~~~~~----~~~~g~~~~~~~~~----------------------------~~~~~w-~~~~~~~i~~ 315 (576)
..+.....+ +..+|.+ +.++. +...+| |-+ +++
T Consensus 548 ~~~~~~g~~pl~~~~~~~~~~~p~cg~~--~~RetDtmDtw~~Sswy~~r~~~p~~~~~~~~~~~~~~w~PvD----~yi 621 (963)
T PLN02563 548 FTPTGTGEPPLAKAVSWVNTVDPSSGKP--ARRETNTMPQWAGSCWYYLRFMDPKNSNALVDKEKEKYWMPVD----LYV 621 (963)
T ss_pred cccCCCCCCchhcchhhhcCcCcCCCCC--cEECCCcCCchhhccHHHHHHhCCCccccccCHHHHhCcCCCc----Eee
Confidence 011111111 1122221 11111 111234 433 899
Q ss_pred eeecCcchh---HhHHHHHHHhcC---CCCC-cEEeeeccEEe----------CCc------------------------
Q psy2393 316 IGKDIFYFH---ILFWPAILKFSG---RKLP-NNIFVHGFMTI----------NGK------------------------ 354 (576)
Q Consensus 316 ~G~D~~~fh---~~~~~a~l~~~~---~~~p-~~~~~~g~v~~----------~g~------------------------ 354 (576)
+|.||+-.| +.+|...+..+| .+.| +.+++||||+. +|+
T Consensus 622 gG~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (963)
T PLN02563 622 GGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVI 701 (963)
T ss_pred ccHHHHhhHhHHHHHHHHHHHHhhccCCcccHHHHhccceeecCccccceecCCCcCccccccccccccccccccccccc
Confidence 999996555 455655454444 2455 89999999984 455
Q ss_pred ---------------------cccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHH
Q psy2393 355 ---------------------KMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKY 413 (576)
Q Consensus 355 ---------------------KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~ 413 (576)
|||||+||+|+|.+++++ ||+|++|||+++.+|.. +++.++.+.+... ..+++++
T Consensus 702 ~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~k-YGADaLRl~ll~~ap~~-dd~~w~~~~V~g~--~rfL~rl 777 (963)
T PLN02563 702 KSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSE-YGADSLRLYEMFMGPLR-DSKTWSTSGVEGV--HRFLGRT 777 (963)
T ss_pred ccccccccccCCcccccccccccccccCCcCCHHHHHHH-cCcHHHHHHHHhCCCcc-cccccCHHHHHHH--HHHHHHH
Confidence 999999999999999999 99999999999876544 6677887665443 3345666
Q ss_pred HHHHHHHHHHHHHHcC-CCCCCcccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcCccccccC
Q psy2393 414 INIASRSSSFIEKYFK-GYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWKLAKN 492 (576)
Q Consensus 414 ~n~~~R~~~~~~~~~~-~~~~~~~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k~~~~~~~ 492 (576)
+|++...... ...+. +..+.....| .|++++++.+.+.+.++|++|+|+.|++.|++|++..+. |.
T Consensus 778 wn~~~~~~~~-~~~~~~~~~~~~~~~d-~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~n~l~~-------~~---- 844 (963)
T PLN02563 778 WRLVVGAPLP-DGSFRDGTVVTDEEPS-LEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTNAAYK-------WD---- 844 (963)
T ss_pred HHHHHHhhhc-ccccCccccccCCcch-HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhC-------ch----
Confidence 6664321000 00011 1111111225 899999999999999999999999999999999865432 11
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCc----ccccc
Q psy2393 493 NIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP----LQWIN 541 (576)
Q Consensus 493 ~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~----~~~~~ 541 (576)
. ...+++..+++||+||+||+|||||+.||... ..|+.
T Consensus 845 --~---------~~~~~l~~ll~LLaPf~PhiaEELW~~Lg~~~sv~~~~WP~ 886 (963)
T PLN02563 845 --K---------VPREAIEPFVLLLSPYAPHLAEELWFRLGHSNSLAYEPWPE 886 (963)
T ss_pred --H---------HHHHHHHHHHHHHHhhhhhHHHHHHHHcCCCCeeeeCCCCC
Confidence 0 11357888999999999999999999998643 46654
No 35
>KOG0433|consensus
Probab=100.00 E-value=3.5e-66 Score=534.48 Aligned_cols=500 Identities=20% Similarity=0.263 Sum_probs=380.0
Q ss_pred cCCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHH-HHHHH------cCCC
Q psy2393 8 FKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM-IAAEK------AGMT 80 (576)
Q Consensus 8 ~~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~-~~a~~------~g~~ 80 (576)
...+..|++.+ +||.|||||+++.|++|++.|++-++| .+|.|++||||||+||+ .+|.+ ...+
T Consensus 55 ~~q~~~f~L~d----anG~lhlghalnkILkdIinr~~laqg-----~~alyvpGwDchGLPiEs~kalssl~~~~~~~s 125 (937)
T KOG0433|consen 55 DQQRVEFELKD----ANGNLHLGHALNKILKDIINRILLAQG-----KSALYVPGWDCHGLPIESTKALSSLTESEGSRT 125 (937)
T ss_pred hccCceEEEec----cCCCccchHHHHHHHHHHHHHHHHhcC-----ceeccCCCCCcCCCchHHHHHhhhhhhccccCC
Confidence 34556788887 999999999999999999999999999 99999999999999999 56654 2345
Q ss_pred HHH-------HHHHHHHHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccc
Q psy2393 81 PKE-------FINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPD 151 (576)
Q Consensus 81 ~~~-------~~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~ 151 (576)
|.| +++..++.+++.|+++|| +|.+.|-|.+++|.....++|.+|+ ++|+||+...||+|+|+++|+|+|
T Consensus 126 ~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~ly-ekgLvyR~~KPVyWSpSSRTALAE 204 (937)
T KOG0433|consen 126 PLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLY-EKGLVYRSFKPVYWSPSSRTALAE 204 (937)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHH-hccceeccCCcceecCcchhhhhh
Confidence 544 677888999999999999 8889999999999999999999999 999999999999999999999999
Q ss_pred cceecc--------------------------------------CC--------CCCCCC-CC-----------------
Q psy2393 152 RYIKGE--------------------------------------CP--------ICNAKD-QY----------------- 167 (576)
Q Consensus 152 ~~v~~~--------------------------------------~p--------~c~~~~-~~----------------- 167 (576)
+|+||- .| .|-..+ .|
T Consensus 205 aELEYn~nH~S~S~Y~~F~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylva 284 (937)
T KOG0433|consen 205 SELEYNDNHQSTSAYFRFKLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVA 284 (937)
T ss_pred hhccCCcCCcceeEEEEEeccCCccccccCCCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccCCcceEEEEc
Confidence 999861 11 111000 00
Q ss_pred -----------CC------------------------------------------------------------------c
Q psy2393 168 -----------GD------------------------------------------------------------------F 170 (576)
Q Consensus 168 -----------g~------------------------------------------------------------------~ 170 (576)
+- .
T Consensus 285 s~L~~~fe~~~~~k~~i~~t~~g~~L~~~~Y~~pl~~~~~~P~l~g~hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l~~~ 364 (937)
T KOG0433|consen 285 SKLLEEFEKSSDRKCKIVGTVKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVE 364 (937)
T ss_pred cchhhhhhhhcCcceeeeeecchhhccCceecCcCccccCCccccccceecCcccceeecCCCCChHHHHHHhhcCCCcc
Confidence 00 1
Q ss_pred cc--cCCCcCC-------CCc------------------------cCCCcccCCCCccEEeeecceeEecCchhhHHHHH
Q psy2393 171 CE--CCSSIYT-------PTK------------------------LINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLR 217 (576)
Q Consensus 171 c~--~cg~~~~-------~~~------------------------l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~ 217 (576)
|. .-|++.. ..+ -.+|++|||++|++.|.++|||+++ +.++..+.
T Consensus 365 s~VD~~G~yT~ea~~~l~Gk~VL~eG~k~vl~~l~~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~--e~~k~~A~ 442 (937)
T KOG0433|consen 365 SFVDSRGCYTREAGHDLDGKEVLGEGQKIVLRLLNHDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDV--EEIKKRAS 442 (937)
T ss_pred cccCCCCceecccccccccchhhccccHhHHHHHhhhhhhhhcccccCCcccccCCceEEecchhheeeH--HhhhhHHH
Confidence 11 1122110 000 0259999999999999999999999 99999999
Q ss_pred HhhhcCC-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCC----C------------------CcEEEEEeec
Q psy2393 218 KWAIHDK-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNT----L------------------EKYFYVWLDA 274 (576)
Q Consensus 218 ~~~~~~~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~----~------------------~~~~~vw~d~ 274 (576)
+. ++++ +.|+....++..++. ++++||||||| .||+|||.. . .+..++|+..
T Consensus 443 ~a-l~~Vk~~P~~~~~rl~~~~~---~R~~WCISRQR-~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~ 517 (937)
T KOG0433|consen 443 MA-LDDVKVAPGDSDLRLKQLVT---TRPSWCISRQR-VWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEI 517 (937)
T ss_pred HH-HhhceeCCcchHHHHHHHHc---CCCcceeeecc-ccCCcceeEEecCCCceeehHHHHHHHHHHHHHhCCcceEeC
Confidence 99 8777 678888999999997 99999999999 999999962 1 1223566654
Q ss_pred ccchhhhcchhhhhCCC-CCcccccccccccccCCCcc-------------eEEEeeecCcchhHhHHHHHHH--hcCCC
Q psy2393 275 PIGYLASLKNFFEKGGP-KKKYNELRNFDEFISSPNTE-------------QYHFIGKDIFYFHILFWPAILK--FSGRK 338 (576)
Q Consensus 275 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~w~~~~~~-------------~i~~~G~D~~~fh~~~~~a~l~--~~~~~ 338 (576)
...-+--- .+..+.++ .+.|.+..+.-+.|.|+++. .++..|.||. .+++..++|. |...+
T Consensus 518 ~~eellpe-~~~~e~~~~a~ey~kgtDimDVWFDSGssWs~v~~~~~~~~aDv~LEG~DQ~--rGWFQSsLLTsvA~q~k 594 (937)
T KOG0433|consen 518 DVEELLPE-EEVREIPDIASEYKKGTDIMDVWFDSGSSWSAVLDNEREHVADVYLEGVDQF--RGWFQSSLLTSVAVQNK 594 (937)
T ss_pred ChhHhCcH-hhhcccchhHHHhccCCceeeeEecCCCcceeecCCCCCcceeeEEecchhc--chHHHHHHHHHHHHhcc
Confidence 33211100 00101010 01233335555566554321 3788899996 2334433333 33445
Q ss_pred CC-cEEeeeccEEe-CCccccccCCCccChhHHhhc-----CCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHH
Q psy2393 339 LP-NNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKI-----GMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIG 411 (576)
Q Consensus 339 ~p-~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~-----g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~ 411 (576)
.| +.+++|||+.+ +|.|||||+||||+|+.+++. .||+|.||||++.. +...++......+.+. ++-+.
T Consensus 595 APYk~vivHGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~WVA~~--~~t~d~~iGp~il~qv--~e~l~ 670 (937)
T KOG0433|consen 595 APYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVAGS--ENTGESKIGPKILDQV--DEKLI 670 (937)
T ss_pred CCchheeeeeeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceeeeeecc--cccCceecCHHHHHHH--HHHHH
Confidence 66 89999999999 999999999999999999973 39999999999965 6667888888866554 55688
Q ss_pred HHHHHHHHHHHHHHHHcCC--CCCC-ccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHhhhhcC
Q psy2393 412 KYINIASRSSSFIEKYFKG--YLNM-KWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT--NFINIFFDQNK 485 (576)
Q Consensus 412 ~~~n~~~R~~~~~~~~~~~--~~~~-~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~--~~~n~y~~~~k 485 (576)
+++|+++.+.+-+.+...+ .+|. .+. .| +.++.+|..+.+.+++.|++|+|+++++.|..|. .+++.|++..|
T Consensus 671 K~R~T~RfllGnl~d~~~~~~~~p~~dl~~iD-q~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~YfdivK 749 (937)
T KOG0433|consen 671 KFRNTFRFLLGNLQDFDGKQVKFPLKDLRYID-QYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVK 749 (937)
T ss_pred HHHhHHHHHhhcccccCCccccccchhhhhhh-HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 9999987776666543222 2232 121 26 8999999999999999999999999999999998 88999999999
Q ss_pred ccccccCc--ccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCC
Q psy2393 486 PWKLAKNN--IYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNIS 535 (576)
Q Consensus 486 ~~~~~~~~--~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~ 535 (576)
++.|++.. .+++.+++ +|..++..++..++||+||++||+||.|...
T Consensus 750 DRLY~~~~~s~~rrs~Qt---tL~h~l~~l~~~iaPIlP~LaeEvwq~lP~~ 798 (937)
T KOG0433|consen 750 DRLYCDKVGSESRRSAQT---TLHHLLHNLAHIISPILPHLAEEVWQHLPGS 798 (937)
T ss_pred hhhhcCCCCcHHHHHHHH---HHHHHHHHHHHHHccccHHHHHHHHHhCCCC
Confidence 99998743 33444554 5557888899999999999999999999854
No 36
>KOG0432|consensus
Probab=100.00 E-value=8.2e-65 Score=534.84 Aligned_cols=485 Identities=20% Similarity=0.282 Sum_probs=377.7
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc-----CCC---
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA-----GMT--- 80 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~-----g~~--- 80 (576)
..+..|.++.|||+++|.||||||.+..+.|+++||.||.| +.|.|++|+|+.|..++..+++. |.+
T Consensus 72 ~~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G-----~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~ 146 (995)
T KOG0432|consen 72 NPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHG-----YQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHD 146 (995)
T ss_pred CCCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcC-----CeeeecCCccccchhHHHHHHHHHHHhcCcchhh
Confidence 35678999999999999999999999999999999999999 99999999999999988877762 232
Q ss_pred --HH-------HHHHHHHHHHHHHHhhcCcc--ccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccc
Q psy2393 81 --PK-------EFINNISSNRKKYLDGFYIK--FDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFL 149 (576)
Q Consensus 81 --~~-------~~~~~~~~~~~~~l~~lgi~--~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l 149 (576)
.. +|-+++...|.++|++||.+ |++.+.|+|+...+.|.+.|.+|+ +.|+||+...-++||+..++.+
T Consensus 147 lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~-eeglIyR~~rlVNW~~~L~sai 225 (995)
T KOG0432|consen 147 LGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLH-EEGLIYRANRLVNWCPALRSAI 225 (995)
T ss_pred cCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHH-hcCceEecCceeeechhHHhhh
Confidence 22 35677888999999999984 568888999999999999999999 9999999999999999999999
Q ss_pred cccceecc---------CCC------------------------------------------------------------
Q psy2393 150 PDRYIKGE---------CPI------------------------------------------------------------ 160 (576)
Q Consensus 150 ~~~~v~~~---------~p~------------------------------------------------------------ 160 (576)
+|.||+.. .|.
T Consensus 226 SdiEVe~~ei~~~t~l~vpGyd~~VeFG~L~~faY~v~gs~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~lhGk~~~hP 305 (995)
T KOG0432|consen 226 SDIEVESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPETILGDVAVAVHPDDDRYKHLHGKFVKHP 305 (995)
T ss_pred hhheecceecCCCceEecCCCCcceeeeeeeEEEEeccCCCCeEEEecCCccccccceeEEeCCCCcccccccCceeecC
Confidence 99998741 010
Q ss_pred -CCCC----------CC---------------------------------CCCccccCCCcC-----C------------
Q psy2393 161 -CNAK----------DQ---------------------------------YGDFCECCSSIY-----T------------ 179 (576)
Q Consensus 161 -c~~~----------~~---------------------------------~g~~c~~cg~~~-----~------------ 179 (576)
++.. .. .|..-..||.+- +
T Consensus 306 ~~~r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~ 385 (995)
T KOG0432|consen 306 FTGRKLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDDGLLNNVCGEFKGMKRFEAREKVVEKLKEL 385 (995)
T ss_pred CCCCccceeecccccccccccceEecCCCChhHHHHHHhcCCCceeEEcCCCceeccchhccCcHHHHHHHHHHHHHHHh
Confidence 0000 00 011122344220 0
Q ss_pred -------CCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC---CCChhHHHHHHHHHhhcCCCCCccc
Q psy2393 180 -------PTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK---RLQPEIVNKIKEWLEKDNKFNDWDI 249 (576)
Q Consensus 180 -------~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~dw~i 249 (576)
.-.++-|.|.|+|..+++....|||++. ........+. ++++ .+|+...+....|++ +.+||||
T Consensus 386 gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c--~ema~~A~~a-v~sG~L~i~P~~~~k~w~~W~~---~i~DWCi 459 (995)
T KOG0432|consen 386 GLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSC--KEMAKKALKA-VESGKLEILPEFHEKEWYRWLE---NIRDWCI 459 (995)
T ss_pred hhhhccCCCceeccccCCCCCcccccccchheeeh--HHHHHHHHHH-HhcCCeEECchHHHHHHHHHHh---hccccch
Confidence 0113349999999999999999999999 8898888888 6654 467778899999998 9999999
Q ss_pred ccCCCCCCeecCCC----------C-------------------------------CcEEEEEeecccchhhhcchhhhh
Q psy2393 250 SRDAPYFGIKIPNT----------L-------------------------------EKYFYVWLDAPIGYLASLKNFFEK 288 (576)
Q Consensus 250 sR~~~~WG~~iP~~----------~-------------------------------~~~~~vw~d~~~~~~~~~~~~~~~ 288 (576)
|||- +||+.||.. + ..|+++||.+.+..++..| |.++
T Consensus 460 SRQL-WWGHrIPAy~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~lG-WP~~ 537 (995)
T KOG0432|consen 460 SRQL-WWGHRIPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLG-WPEE 537 (995)
T ss_pred hhhh-hhccccceeeeecccCCCccceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccccchhcC-Cccc
Confidence 9998 999999961 0 2345566666666665543 2222
Q ss_pred CCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhc----CCCCC-cEEeeeccEEe-CCccccccCCC
Q psy2393 289 GGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFS----GRKLP-NNIFVHGFMTI-NGKKMSKSNKI 362 (576)
Q Consensus 289 ~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~----~~~~p-~~~~~~g~v~~-~g~KMSKS~gn 362 (576)
. +++..|+|-+ +.-.|.|++|| |+|-+..+ ..+.| +.++.||+|.+ .|+|||||+||
T Consensus 538 t---------~d~~~fyP~s----llETG~DILfF----WVaRMvmLg~kLtG~lPF~~V~LH~mVRDa~GRKMSKSLGN 600 (995)
T KOG0432|consen 538 T---------KDFKNFYPLS----LLETGHDILFF----WVARMVMLGLKLTGELPFKEVLLHGLVRDAHGRKMSKSLGN 600 (995)
T ss_pred c---------ccHHhcCCch----hhhcCchHHHH----HHHHHHHhhhhhcCCCCchheeechhhccccccccchhhcc
Confidence 1 3455555433 44569999988 55522222 23455 89999999999 99999999999
Q ss_pred ccChhHHhh------------------------------c---C---CChhHHHHHHHhhCCCCCCCcccchhhHhhhhh
Q psy2393 363 GISPLYYLK------------------------------I---G---MNPEWLRYYIASKLNNKIEDIDFNSQSFISCVN 406 (576)
Q Consensus 363 ~i~~~dll~------------------------------~---g---~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~ 406 (576)
||+|.|+|+ . | .|.|||||.||+.... .+|+++|..++...
T Consensus 601 VIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~-~~dInLDv~rv~g~-- 677 (995)
T KOG0432|consen 601 VIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQ-GRDINLDVLRVEGY-- 677 (995)
T ss_pred ccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHcccc-CccccccHHHHhhH--
Confidence 999999997 1 1 5999999999997544 47899998877554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCC--------cccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HH
Q psy2393 407 SDLIGKYINIASRSSSFIEKYFKGYLNM--------KWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT--NF 476 (576)
Q Consensus 407 ~~~~~~~~n~~~R~~~~~~~~~~~~~~~--------~~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~--~~ 476 (576)
+.|+|++||+.+.+...+.+++ +|. ....| .|+++.|..+.+.+.+.++.++|+.|+..+..|. ++
T Consensus 678 r~FcNKlWNa~rF~l~~lg~~~---~p~~~~~~~~~~~~~d-~WIlsrL~~av~~~~~~~~~~~f~~at~a~~~Fwl~~l 753 (995)
T KOG0432|consen 678 RHFCNKLWNATRFALQRLGENF---VPSPTEDLSGNESLVD-EWILSRLAEAVEEVNESLEARNFHLATSALYAFWLYDL 753 (995)
T ss_pred HHHHHHHHHHHHHHHHhcccCC---CCCcccccCCCcchhH-HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 7799999999876655443322 222 11136 9999999999999999999999999999999998 99
Q ss_pred HHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 477 INIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 477 ~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
|..|++..||...... ......+..+|..+|....+||+|||||++|++||+|.-
T Consensus 754 CDVYlE~~Kp~l~~~~---~~~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP~ 808 (995)
T KOG0432|consen 754 CDVYLEATKPLLWGDS---EALAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRLPR 808 (995)
T ss_pred HHHHHHHhhHHhcCCc---HHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHhccc
Confidence 9999999998654332 223333446666888899999999999999999999853
No 37
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=5.5e-64 Score=575.98 Aligned_cols=477 Identities=16% Similarity=0.200 Sum_probs=342.9
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc-------CCC--
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA-------GMT-- 80 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~-------g~~-- 80 (576)
++++|+++.||||+||.|||||+++++++|+++||+||+| ++|+|++||||||+||+..|++. |..
T Consensus 43 ~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G-----~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~ 117 (1084)
T PLN02959 43 PGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRG-----ANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPV 117 (1084)
T ss_pred CCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCC-----CccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCcc
Confidence 3478999999999999999999999999999999999999 99999999999999999998652 321
Q ss_pred -----------------------------------------------------------------HHHHHHHHHHHHHHH
Q psy2393 81 -----------------------------------------------------------------PKEFINNISSNRKKY 95 (576)
Q Consensus 81 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 95 (576)
|..+++++...++++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~ 197 (1084)
T PLN02959 118 FPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKED 197 (1084)
T ss_pred cccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHH
Confidence 222445555778999
Q ss_pred HhhcCc--cccccccCCC--hhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceec---------------
Q psy2393 96 LDGFYI--KFDNWYSTDS--IENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKG--------------- 156 (576)
Q Consensus 96 l~~lgi--~~d~~~~t~~--~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~--------------- 156 (576)
|++||+ +|++.+.|++ +.|...+++.|.+|+ ++|+||++..+++|||.|++.++|+++++
T Consensus 198 ~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~-ekG~I~~g~rpv~wcp~~~t~ladhe~~~~e~~~~~~y~~ikf~ 276 (1084)
T PLN02959 198 LKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLK-KKGKIVKDKRYTIYSPLDGQPCADHDRASGEGVGPQEYVLIKME 276 (1084)
T ss_pred HHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHH-HCCCEEecCeeeeeCCCCCCCchhhHHhcCCCCCcceeEEEEEe
Confidence 999998 6678888988 999999999999999 99999999999999999999999985431
Q ss_pred -----------------------cCC---------------------C-----------------CCC------------
Q psy2393 157 -----------------------ECP---------------------I-----------------CNA------------ 163 (576)
Q Consensus 157 -----------------------~~p---------------------~-----------------c~~------------ 163 (576)
+.| . +..
T Consensus 277 v~~~~~~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~ 356 (1084)
T PLN02959 277 VLPPFPGKLKALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEINDTEVFILTARAALNLAYQNFSKVPGKPTCLV 356 (1084)
T ss_pred ecCcchhhhhhcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEEecCCeEEEEehhhhhhhHHhhhcccCCCcEEEE
Confidence 001 0 000
Q ss_pred -------------------CC-----------C--------------------------------CCC----------cc
Q psy2393 164 -------------------KD-----------Q--------------------------------YGD----------FC 171 (576)
Q Consensus 164 -------------------~~-----------~--------------------------------~g~----------~c 171 (576)
+. . ||. .+
T Consensus 357 ~~~G~~L~G~~~~~Pl~~~~~i~ilp~~~V~~~~GTGvV~~vPah~pdDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~ 436 (1084)
T PLN02959 357 ELTGYDLIGLPLKSPLAFNEVIYALPMLTILTDKGTGVVTSVPSDSPDDYMALSDLKAKPALRAKYGVKDEWVLPFEVVP 436 (1084)
T ss_pred EEEHHHhCCCEEECCCCCCcceeEeceEEEeCCCCeeeEEeCCCCCHHHHHHHHhhccchhHHHHcCCCcccccccCCcC
Confidence 00 0 000 00
Q ss_pred --ccCCC----------------------------------cCCC----Cc----------------------c------
Q psy2393 172 --ECCSS----------------------------------IYTP----TK----------------------L------ 183 (576)
Q Consensus 172 --~~cg~----------------------------------~~~~----~~----------------------l------ 183 (576)
+.+|. +++. .+ +
T Consensus 437 iid~~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~m~~g~~~G~~v~eAr~~Ii~~L~~~G~l~~~~ep 516 (1084)
T PLN02959 437 IINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTMLVGEYAGRKVQEAKPLIKKKLIEAGQAILYSEP 516 (1084)
T ss_pred ccccCCCCcchhHHHHHhhcccccchhhHHHHHhhhhhhhccccccccCcCcCCcCHHHHHHHHHHHHHhCCCceeeeEc
Confidence 01110 1100 00 0
Q ss_pred CCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCC
Q psy2393 184 INPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPN 262 (576)
Q Consensus 184 ~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~ 262 (576)
..|+|+|||++++++.++|||+++++..+++.+.+. +++. ++|+..++.+.+||+ +++|||||||+ +||+|||.
T Consensus 517 ~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~-l~~v~~~P~~~~~~~~~wl~---~l~DWciSRQr-~wGtpIPW 591 (1084)
T PLN02959 517 EKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKC-LSKMNLYSDETRHGFEHTLG---WLNQWACSRSF-GLGTRIPW 591 (1084)
T ss_pred CCCeEECCCCEEEEeecCCeeEECCchHHHHHHHHH-HcccEEECHHHHHHHHHHHh---CCCceeecccc-cCCCcCCc
Confidence 137999999999999999999999545899999999 7776 568889999999998 99999999999 99999994
Q ss_pred CCC------------------------------------------cEEEEEeecccchhhhcchhhhhCCCCCcccc-cc
Q psy2393 263 TLE------------------------------------------KYFYVWLDAPIGYLASLKNFFEKGGPKKKYNE-LR 299 (576)
Q Consensus 263 ~~~------------------------------------------~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~-~~ 299 (576)
++. .++++||++.....+. + +.... ... ..
T Consensus 592 d~~~~ieslsdstiy~a~yti~~~~~~~~~~g~~~~~i~~~~~~~dV~D~wF~Sg~~p~~t-~-~p~~~-----l~~~r~ 664 (1084)
T PLN02959 592 DEQFLIESLSDSTIYMAYYTVAHLLQGGDMYGKDKSSIKPEQMTDEVWDFVFCGGPLPKSS-D-IPAEL-----LEKMKQ 664 (1084)
T ss_pred ccceeeccCCCCceeechhhHHHHHhhhhccCCccccCChhhcCccceeEeecCCCccccc-C-CCHHH-----HhhhhH
Confidence 221 1334444432211110 0 00000 000 02
Q ss_pred cccccccCCCcceEEEeeecCcchhHhHHHHHHHhc--CCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChh
Q psy2393 300 NFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFS--GRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPE 377 (576)
Q Consensus 300 ~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~--~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d 377 (576)
+|+.|+|.+ +++.|+||+++|..+......++ ..+.|+.+++||||+.+|+|||||+||+|+|.+++++ ||+|
T Consensus 665 ef~~~yP~D----l~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~k-yGAD 739 (1084)
T PLN02959 665 EFEYWYPFD----LRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIEE-FSAD 739 (1084)
T ss_pred HHHhhCCCe----EEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCccccCCCcCCHHHHHHH-hCch
Confidence 344444543 89999999999875533222222 2456689999999999999999999999999999999 9999
Q ss_pred HHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCC-C-Cccc-CChHHHHHHHHHHHHHH
Q psy2393 378 WLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYL-N-MKWV-KDNDTFLSKLRVVSSSI 454 (576)
Q Consensus 378 ~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~-~-~~~~-~d~~~l~~~l~~~~~~v 454 (576)
++|||+++.+ +..+|.+|+.+.... ...++.|.+..+.+.+.. .... + ..+. .| +|++++++.+.+.+
T Consensus 740 alRl~la~~~-~~~~D~nF~~k~~n~-----~~~~l~n~~~~~~~~~~~--~~~~~~~~~~~~~D-~wils~l~~~i~~v 810 (1084)
T PLN02959 740 ATRFALADAG-DGVDDANFVFETANA-----AILRLTKEIAWMEEVLAA--ESSLRTGPPSTYAD-RVFENEINIAIAET 810 (1084)
T ss_pred HHHHHHhhcC-CccCCCCccHHHHHH-----HHHHHHHHHHHHHHhhhh--hcccCCcccCCHHH-HHHHHHHHHHHHHH
Confidence 9999999864 455788999875432 234444544322222211 0011 1 1122 26 99999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHh-hhhcCc--cccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Q psy2393 455 QKYYENRNFNKVLYIVIEQTNFINIF-FDQNKP--WKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETF 531 (576)
Q Consensus 455 ~~a~~~~~~~~~~~~l~~~~~~~n~y-~~~~k~--~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~ 531 (576)
.++|++|+|+.|++..+ | ++..++ +.+.... ... ..++..+|..+++||+|||||+||+||+.
T Consensus 811 ~~a~e~y~f~~A~~~~~--------Yel~~~k~~yr~~~~~~---~~~---~~~L~~vl~~~l~LLaP~~PfiaEEiW~~ 876 (1084)
T PLN02959 811 EKNYEAMMFREALKSGF--------YDLQAARDEYRLSCGSG---GMN---RDLVWRFMDVQTRLITPICPHYAEHVWRE 876 (1084)
T ss_pred HHHHHcccHHHHHHHHH--------HHHHHhHHHHhhccccc---hHH---HHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 99999999999999642 2 222222 1121111 112 24566789999999999999999999999
Q ss_pred c
Q psy2393 532 L 532 (576)
Q Consensus 532 L 532 (576)
|
T Consensus 877 l 877 (1084)
T PLN02959 877 I 877 (1084)
T ss_pred c
Confidence 9
No 38
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.9e-63 Score=537.74 Aligned_cols=460 Identities=20% Similarity=0.290 Sum_probs=349.0
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
+||||+.+.|||||.||+||.|+|+++||++||+||+| |+|+|.+|||..|+|++..|.+.|.+|..+++++++.
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~G-----yNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~ 108 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQG-----YNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAY 108 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcC-----CeecccCcccccCchHHHHHHHhCCChHHHHHHHHHH
Confidence 69999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcc--ccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCC
Q psy2393 92 RKKYLDGFYIK--FDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGD 169 (576)
Q Consensus 92 ~~~~l~~lgi~--~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~ 169 (576)
++++|+.||.+ |++-+.|+||+|..++|++|.+|+ ++|++|+++.++.|||.|+|.|++.
T Consensus 109 ~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~-ekGL~y~~~~~VnwcP~d~tvlane----------------- 170 (814)
T COG0495 109 MKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLY-EKGLAYRKEAPVNWCPVDGTVLANE----------------- 170 (814)
T ss_pred HHHHHHHhCCccccccceecCCccHHHHHHHHHHHHH-HCCCEEeccccceeCCCcCCccccc-----------------
Confidence 99999999985 558888999999999999999999 9999999999999988888877754
Q ss_pred ccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcC-C-CCChhHHHHHHHHHhh-------
Q psy2393 170 FCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD-K-RLQPEIVNKIKEWLEK------- 240 (576)
Q Consensus 170 ~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~-~-~~~~~~~~~~~~~l~~------- 240 (576)
++++..|||||.+|+.+...||||++ +++.+.|++- +.. . .||+.++....+|+.+
T Consensus 171 ------------qv~~g~~~r~~~~V~~kel~qw~~ki--t~yae~ll~~-l~~l~~~wPE~Vk~mq~nWIg~s~g~~v~ 235 (814)
T COG0495 171 ------------QVIDGGCWRCGEPVEIKELTQWFFKI--TDYADELLDD-LDKLATLWPETVKGMQRNWIGPSEGYEVA 235 (814)
T ss_pred ------------eeecCCcccCCCceeEeeeEEEEEEe--chhHHHHHhh-hhhhccCCchhHHHHHHcCcCCCCCeEEE
Confidence 55677889999999999999999999 9999998887 444 3 4898899999999874
Q ss_pred --------------------------------------------------------------------------------
Q psy2393 241 -------------------------------------------------------------------------------- 240 (576)
Q Consensus 241 -------------------------------------------------------------------------------- 240 (576)
T Consensus 236 f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g~~a 315 (814)
T COG0495 236 FVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAEKDGVFLGGYA 315 (814)
T ss_pred EecCCcccceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeeccCCCcceeccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy2393 241 -------------------------------------------------------------------------------- 240 (576)
Q Consensus 241 -------------------------------------------------------------------------------- 240 (576)
T Consensus 316 ~~p~~~e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~linS~~~~gl~~e 395 (814)
T COG0495 316 INPVNGEKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVLINSGGLDGLDYE 395 (814)
T ss_pred cCCCCCCcCCEEEeCcccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCceEeccccccCcchh
Confidence
Q ss_pred --------------------cCCCCCcccccCCCCCCeecCCCC---C-------cEEEEEeeccc------chhhhcch
Q psy2393 241 --------------------DNKFNDWDISRDAPYFGIKIPNTL---E-------KYFYVWLDAPI------GYLASLKN 284 (576)
Q Consensus 241 --------------------~~~~~dw~isR~~~~WG~~iP~~~---~-------~~~~vw~d~~~------~~~~~~~~ 284 (576)
+.+++||.+|||+ +||.|+|.-. . .-+.+|.-+.. +.|.....
T Consensus 396 ~a~~~~~~~l~~~~~~q~~v~Y~lrdW~~srqR-ywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~ 474 (814)
T COG0495 396 EAKVKIRCGLVKRGLGQWFVNYRLRDWLKSRQR-YWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEE 474 (814)
T ss_pred HHHHHHHHhHHHhcCCceEEecccchHHHHHHH-HhCCCcceeEcccCCcccCchHhcCcccccccccCCCCCCCCCCcc
Confidence 2346799999999 9999999521 0 01111211100 01111000
Q ss_pred hhhh-CCCC---------------Ccc-------------ccc-ccccccc-cCCCcceEEEeeecCcchhHhHH---HH
Q psy2393 285 FFEK-GGPK---------------KKY-------------NEL-RNFDEFI-SSPNTEQYHFIGKDIFYFHILFW---PA 330 (576)
Q Consensus 285 ~~~~-~g~~---------------~~~-------------~~~-~~~~~~w-~~~~~~~i~~~G~D~~~fh~~~~---~a 330 (576)
|... +... +.| +.+ +.++ +| |=+ ++++|+||+-.|..+. -.
T Consensus 475 W~~~s~~~s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~-yW~PVD----~yigG~ehavlHLly~rF~Hk 549 (814)
T COG0495 475 WVIESLPDSTAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFN-YWYPVD----LYIGGIEHAVLHLLYFRFFHK 549 (814)
T ss_pred eEEEecCCCceeeehhhhhHhcccccccHhhcChhcCccchhcHHHHh-cccChh----eeecchhHHHHHHHHHHHHHH
Confidence 0000 0000 000 011 2223 45 432 8999999998886543 33
Q ss_pred HHHhcCC---CCC-cEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhh
Q psy2393 331 ILKFSGR---KLP-NNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCV 405 (576)
Q Consensus 331 ~l~~~~~---~~p-~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~ 405 (576)
.+...|+ ..| +.++++|||+. +|+|||||+||+|+|++++++ ||+|++|+|++..+|.. +|++++.+.+...
T Consensus 550 al~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~-yGADt~Rl~~m~~ap~~-~d~~W~e~gv~g~- 626 (814)
T COG0495 550 ALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEK-YGADTVRLYIMFAAPPE-QDLEWSESGVEGA- 626 (814)
T ss_pred HhcccCcCCCccchhhhhccceEEecCCCccccccCCCCCHHHHHHH-hCchHHHHHHHhhCChh-hCCCCChhhhHHH-
Confidence 3444443 233 67999999999 899999999999999999999 99999999999987755 7788887765443
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCCh-HHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHhhhh
Q psy2393 406 NSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDN-DTFLSKLRVVSSSIQKYYEN-RNFNKVLYIVIEQTNFINIFFDQ 483 (576)
Q Consensus 406 ~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~-~~l~~~l~~~~~~v~~a~~~-~~~~~~~~~l~~~~~~~n~y~~~ 483 (576)
..+++++++++...... . ......++ ..+...++++.+.|.+.++. +.++.++..+++|++...+|...
T Consensus 627 -~rfL~r~~~l~~~~~~~-------~-~~~~~~~~~~~~~~~~h~~~~~v~~~~e~~~~~nt~i~~~m~l~N~l~~~~~~ 697 (814)
T COG0495 627 -RRFLQRVWNLVKEHLEK-------L-VEELTKEQGKEDRWLLHRTIKKVTEDFEARQTFNTAIAALMELLNALRKYLRR 697 (814)
T ss_pred -HHHHHHHHHHHHHhhhc-------c-cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22344444444332211 1 11111121 34556667777888888877 88999999999999998888765
Q ss_pred cCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCC----ccccccc
Q psy2393 484 NKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNIS----PLQWINI 542 (576)
Q Consensus 484 ~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~----~~~~~~~ 542 (576)
... . . .++.+++..+.+||+||+||+|||+|+.||.. ...|+..
T Consensus 698 ~~~--------~----~---~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~~~~v~~~~wP~~ 745 (814)
T COG0495 698 TEG--------D----R---KVLREALETWVRLLAPFAPHIAEELWEELGNEGFVSNAPWPEP 745 (814)
T ss_pred ccc--------h----H---HHHHHHHHHHHHHhcccccHHHHHHHHHhcCCCceeeCCCCCC
Confidence 431 0 1 33446888899999999999999999999953 2457544
No 39
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=7.4e-63 Score=505.08 Aligned_cols=303 Identities=26% Similarity=0.378 Sum_probs=268.6
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc-CCCH---------
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA-GMTP--------- 81 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~-g~~~--------- 81 (576)
++|+|.+|||||||++||||+++++++|+++||++++| ++|.+++|+||||+||+.+|++. |.++
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G-----~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~ 75 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQG-----YYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGI 75 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcC-----CccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCH
Confidence 46999999999999999999999999999999999999 99999999999999999999986 7654
Q ss_pred -------HHHHHHHHHHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCcccccc
Q psy2393 82 -------KEFINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDR 152 (576)
Q Consensus 82 -------~~~~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~ 152 (576)
+++++++.+.|.++|++||| ++|.+++|++++|.+.++++|.+|+ ++|+||+++.+++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~-~~G~iY~~~~~v~~----------- 143 (338)
T cd00818 76 AEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLH-EKGLLYRGYKVVPW----------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHH-HCCCEeccCCeeee-----------
Confidence 68999999999999999999 7788999999999999999999999 99999999999988
Q ss_pred ceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCC-CChhHH
Q psy2393 153 YIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKR-LQPEIV 231 (576)
Q Consensus 153 ~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~-~~~~~~ 231 (576)
+++.+.++||||++ +++++.+.++ +++.. +|+..+
T Consensus 144 -----------------------------------------~v~~~~~~qwf~~l--~~~~~~l~~~-~~~~~~~P~~~~ 179 (338)
T cd00818 144 -----------------------------------------PLIYRATPQWFIRV--TKIKDRLLEA-NDKVNWIPEWVK 179 (338)
T ss_pred -----------------------------------------EEEEEecCeEEEEc--HHHHHHHHHH-HhcCcEECHHHH
Confidence 57899999999999 9999999999 76664 588899
Q ss_pred HHHHHHHhhcCCCCCcccccCCCCCCeecCC----CC--------CcEEEEEeecccchhhhcchhhhhCCCCCcccccc
Q psy2393 232 NKIKEWLEKDNKFNDWDISRDAPYFGIKIPN----TL--------EKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELR 299 (576)
Q Consensus 232 ~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~----~~--------~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~ 299 (576)
+.+.+|++ +++||||||++ .||+|+|. ++ ++++|||||+..++++..+. ... ..
T Consensus 180 ~~~~~~l~---~l~dw~iSR~~-~WGip~P~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~~~-~~~---------~~ 245 (338)
T cd00818 180 NRFGNWLE---NRRDWCISRQR-YWGTPIPVWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQLHY-PFE---------NE 245 (338)
T ss_pred HHHHHHHh---cchhcceeeec-ccCceeeEEEecCCCeEEEecCCceEEEEEeCCCCHHHHcCC-CCc---------ch
Confidence 99999998 79999999999 99999996 33 77999999998888775431 111 13
Q ss_pred cccccccCCCcceEEEeeecCcc--hhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCCh
Q psy2393 300 NFDEFISSPNTEQYHFIGKDIFY--FHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNP 376 (576)
Q Consensus 300 ~~~~~w~~~~~~~i~~~G~D~~~--fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~ 376 (576)
+|+.+||.+ ++++|+||++ ||..+|++++ ..+..+|+.+++||+++. +|+|||||+||+|+++|+++. ||+
T Consensus 246 ~~~~~~p~d----~~~~GkDii~~wf~~~~~~~~~-~~~~~p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~~-~~~ 319 (338)
T cd00818 246 DFEELFPAD----FILEGSDQTRGWFYSLLLLSTA-LFGKAPYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDK-YGA 319 (338)
T ss_pred hhhccCCCe----EEeecchHHhHHHHHHHHHHHH-hcCCCccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHHH-cCc
Confidence 577788754 8999999985 8999999865 455566699999999987 899999999999999999999 999
Q ss_pred hHHHHHHHhhCCCCCCCccc
Q psy2393 377 EWLRYYIASKLNNKIEDIDF 396 (576)
Q Consensus 377 d~lR~~l~~~~~~~~~d~~f 396 (576)
|++|||+++..+.+ +|+.|
T Consensus 320 D~~R~~l~~~~~~~-~d~~~ 338 (338)
T cd00818 320 DALRLWVASSDVYA-EDLRF 338 (338)
T ss_pred HHHHHHHHhCCCcc-CCCCC
Confidence 99999999986554 55543
No 40
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=9.5e-62 Score=532.66 Aligned_cols=362 Identities=25% Similarity=0.322 Sum_probs=266.2
Q ss_pred cCCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc-CC-------
Q psy2393 8 FKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA-GM------- 79 (576)
Q Consensus 8 ~~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~-g~------- 79 (576)
.+++++|+|++||||+||.|||||+++++++|+++||+||+| ++|.+++|||+||+||+.++++. |.
T Consensus 19 ~~~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G-----~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~ 93 (601)
T PF00133_consen 19 NKNKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQG-----YNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRK 93 (601)
T ss_dssp TTTSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTT-----SEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCS
T ss_pred CCCCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCC-----cEeCCCCCcCCCCcchhhhHHHhhccccccccc
Confidence 456789999999999999999999999999999999999999 99999999999999999999873 33
Q ss_pred ---------CHHHHHHHHHHHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCcc
Q psy2393 80 ---------TPKEFINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIF 148 (576)
Q Consensus 80 ---------~~~~~~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~ 148 (576)
.+.++++++.+.++++|++||+ +|++.+.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~-~kglIyr~~~pv~w~p~~~t~ 172 (601)
T PF00133_consen 94 DLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLY-EKGLIYRGKKPVNWCPSCQTA 172 (601)
T ss_dssp CSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHH-HTTSEEEEEEEEEEETTTTEE
T ss_pred ccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHH-hcCcEEeeCCCCCcCcccccc
Confidence 2567889999999999999998 5668999999999999999999999 999999999999999999999
Q ss_pred ccccceecc--------------------------CC----C----CCCCC-----------------------------
Q psy2393 149 LPDRYIKGE--------------------------CP----I----CNAKD----------------------------- 165 (576)
Q Consensus 149 l~~~~v~~~--------------------------~p----~----c~~~~----------------------------- 165 (576)
|+++||++. .| . |..++
T Consensus 173 lsd~Ev~~~~~~~~~~~v~f~~~~~~~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~~~~~~~i~~~~~~~~~~~~~~~~~~ 252 (601)
T PF00133_consen 173 LSDHEVEYKEVKSPSIYVKFPLKDGEEVYLVIWTTRPETLPGNTAIAVNPDFDYVINGERYIVAKDLVEKLSKQEKTKLE 252 (601)
T ss_dssp E-GGGEEEEEEEEEEEEEEEEESSSSEEEEEEEES-GGGGGG-BEEEE-TTSEEEETTEEEEEEHHHHHHHHTTTSSSEE
T ss_pred hhhhhcccccccCceEEEEEEecCccceEEEEEechhhHHhCCeeEEECCCccceeCCeeehHHHHHHHHHHhhhhhccc
Confidence 999999741 11 0 11111
Q ss_pred -------------------------------CCCCccc--------------------------cCCCcCCCC-------
Q psy2393 166 -------------------------------QYGDFCE--------------------------CCSSIYTPT------- 181 (576)
Q Consensus 166 -------------------------------~~g~~c~--------------------------~cg~~~~~~------- 181 (576)
..|..|. .-|++....
T Consensus 253 ~~~g~~L~g~~~~~P~~~~~~~vi~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~ 332 (601)
T PF00133_consen 253 DFRGKELVGLKYIHPLTGREVPVIPDDFVDMDKGTGIVHSAPAHGPDDYEIGKKHNLPIINPIDEDGRFTEEAGKFKGMK 332 (601)
T ss_dssp EEECHHHTTSEEE-TTSSSSEEEEEETTS-SSSTTSEEEE-TTT-HHHHHHHHHHHHCCGCCCCCTSTBBSCCSTTTTSB
T ss_pred ccCcceecCcEeccccccceeEEEcccccccccchhhhhhcccCCHHHHHHHhhcCceeeEecCCCceEeecccccCCce
Confidence 0011110 111111100
Q ss_pred ------------------------ccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC-CCChhHHHHHHH
Q psy2393 182 ------------------------KLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKE 236 (576)
Q Consensus 182 ------------------------~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~ 236 (576)
+...|+|||||++++.+.++|||+++ +.+++.+.+. +++. ++|+..++++.+
T Consensus 333 v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~--~~~k~~~l~~-~~~i~~~P~~~~~~~~~ 409 (601)
T PF00133_consen 333 VFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKY--DDWKKKALEA-LEKIKFYPESYRKRFEN 409 (601)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEH--HHHHHHHHHH-HHTSEESSSTCHHHHHH
T ss_pred eeeccHHHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEec--HHhHHHHHhh-cccceEEcccchhhhhh
Confidence 00138999999999999999999999 8999999999 7776 678889999999
Q ss_pred HHhhcCCCCCcccccCCCCCCeecCCC---C---------------------------------------------CcEE
Q psy2393 237 WLEKDNKFNDWDISRDAPYFGIKIPNT---L---------------------------------------------EKYF 268 (576)
Q Consensus 237 ~l~~~~~~~dw~isR~~~~WG~~iP~~---~---------------------------------------------~~~~ 268 (576)
|+. +++|||||||+ +||+|||.. . ..++
T Consensus 410 ~i~---~l~DWcISRQR-~WG~PIPiw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvl 485 (601)
T PF00133_consen 410 WID---NLRDWCISRQR-YWGTPIPIWYCEDCGEVLVIESTIELIADRVEKEGIDAWLHKPAEDKLPCCGGELRRDTDVL 485 (601)
T ss_dssp HHH---T--EEE-EESS-SSSEBETEEEETTSEEEECCGGHHHHHHHHSTHHHHSCTSSHHHHHHHTTTSSEEEEHS-EE
T ss_pred hcc---ccccchhhccC-CCCccceeeecccCcccccccccccccccccccccccccccccccccccccccceEEeeeec
Confidence 999 89999999999 999999941 0 2456
Q ss_pred EEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhcCCCCC-cEEeeec
Q psy2393 269 YVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLP-NNIFVHG 347 (576)
Q Consensus 269 ~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~~~p-~~~~~~g 347 (576)
++|||+...++...+. ... ...+|+.++|.+ +++.|+||+++|.........++....| +.+++||
T Consensus 486 D~WfdSg~~~~~~~~~-~~~--------~~~~~~~~~P~D----~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG 552 (601)
T PF00133_consen 486 DTWFDSGLWPFAVLGW-PEN--------DREEFEYWYPVD----LYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHG 552 (601)
T ss_dssp -HHHHHCTCHHHHTTS-TTC--------SCHHHHHHSSBS----EEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE-
T ss_pred cccccccCCccccccc-ccc--------cchhccccCCcc----cccCCccchhhHHHHhHhhccccccCCchheeeecc
Confidence 6677765555443321 000 013455555544 8999999999886554333333333444 8999999
Q ss_pred cEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccc
Q psy2393 348 FMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFN 397 (576)
Q Consensus 348 ~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs 397 (576)
||++ +|+|||||+||+|+|.+++++ ||+|++|+|+++.+. ..+|++||
T Consensus 553 ~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lRl~~~~~~~-~~~D~~~s 601 (601)
T PF00133_consen 553 FVLDEDGRKMSKSKGNVIDPEDIIEK-YGADALRLWLASSAD-PGQDINFS 601 (601)
T ss_dssp -EEETTSSB-BTTTTB--BHHHHHHH-T-HHHHHHHHHHHS--TTS-EEE-
T ss_pred cccccceeecccCCCcccCHHHHHHH-hCcHHHHHHHHhcCC-cccCcccC
Confidence 9998 899999999999999999999 999999999996543 44777775
No 41
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=1.1e-60 Score=486.43 Aligned_cols=294 Identities=35% Similarity=0.568 Sum_probs=263.7
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCC-------------
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGM------------- 79 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~------------- 79 (576)
+|+|++|||||||.+||||+++++++|+++||++++| ++|.+++|+|+||+||+.+|++.+.
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G-----~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~ 75 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRG-----YEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFRE 75 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCC-----CCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHH
Confidence 5899999999999999999999999999999999999 9999999999999999999999887
Q ss_pred CHHHHHHHHHHHHHHHHhhcCcccc--ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceecc
Q psy2393 80 TPKEFINNISSNRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGE 157 (576)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~ 157 (576)
+++++++++.++|+++|++|||++| .+++|.+++|.+.++++|.+|+ ++|+||++..++
T Consensus 76 ~~~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~-~~G~iY~~~~~v------------------ 136 (312)
T cd00668 76 DPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLY-EKGLIYRGTHPV------------------ 136 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHH-HCCCEEeeccee------------------
Confidence 8999999999999999999999887 9999999999999999999999 999999977443
Q ss_pred CCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC-CCChhHHHHHHH
Q psy2393 158 CPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKE 236 (576)
Q Consensus 158 ~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~ 236 (576)
+...|||+++ +++++.+.++ ++.. .+|+..++.+.+
T Consensus 137 ----------------------------------------~~~~~~f~~~--~~l~~~~~~~-~~~~~~~p~~~~~~~~~ 173 (312)
T cd00668 137 ----------------------------------------RITEQWFFDM--PKFKEKLLKA-LRRGKIVPEHVKNRMEA 173 (312)
T ss_pred ----------------------------------------EeeeeEEEEc--HHHHHHHHHH-HhcCCcCChHHHHHHHH
Confidence 4567999999 9999999999 6665 478888999999
Q ss_pred HHhhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEe
Q psy2393 237 WLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFI 316 (576)
Q Consensus 237 ~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~ 316 (576)
||+ +. .||||||++ +||+|+| ++++++||||.++|++..+..... ..+..+|+.+ +|++
T Consensus 174 ~l~--~~-~d~~isR~~-~WG~~~P---~~~i~~Wfds~~~~~~~~~~~~~~----------~~~~~~~~~d----i~~~ 232 (312)
T cd00668 174 WLE--SL-LDWAISRQR-YWGTPLP---EDVFDVWFDSGIGPLGSLGYPEEK----------EWFKDSYPAD----WHLI 232 (312)
T ss_pred HHh--CC-CCeEEeccC-CCCCcCC---cccccchhhccHHHHHHcCCCccc----------hhhhhcCCce----EEEE
Confidence 998 44 499999999 9999999 799999999999998876532211 3466777653 9999
Q ss_pred eecCcchhHhHHHHHHHhcCCC-CCcEEeeeccEEeCC-ccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCc
Q psy2393 317 GKDIFYFHILFWPAILKFSGRK-LPNNIFVHGFMTING-KKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDI 394 (576)
Q Consensus 317 G~D~~~fh~~~~~a~l~~~~~~-~p~~~~~~g~v~~~g-~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~ 394 (576)
|+||+++|+.++++++.+++.. +|+.+++|||++++| +|||||+||+|+++|++++ +|+|++|||+++..+.+ .|+
T Consensus 233 G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~~-~~~da~R~~l~~~~~~~-~d~ 310 (312)
T cd00668 233 GKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEK-YGADALRYYLTSLAPYG-DDI 310 (312)
T ss_pred ecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCCcCCHHHHHHH-cCcHHHHHHHHhcCCcc-CCC
Confidence 9999999999999999888765 678999999999976 9999999999999999999 99999999999986554 555
Q ss_pred cc
Q psy2393 395 DF 396 (576)
Q Consensus 395 ~f 396 (576)
+|
T Consensus 311 ~~ 312 (312)
T cd00668 311 RL 312 (312)
T ss_pred CC
Confidence 54
No 42
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=4.7e-59 Score=473.10 Aligned_cols=302 Identities=25% Similarity=0.342 Sum_probs=263.7
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 92 (576)
|++|++|||||||.+||||+++++.+|+++||+|++| ++|.+++|+||||+||+.+|++.|++|+++++++.+.+
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G-----~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~ 75 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQG-----YNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKM 75 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcC-----CCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccc--ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCc
Q psy2393 93 KKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDF 170 (576)
Q Consensus 93 ~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~ 170 (576)
+++|++|||++| .+++|++++|.+.++++|.+|+ ++|+||+++.+++||
T Consensus 76 ~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~-~~G~iy~~~~~v~~~---------------------------- 126 (314)
T cd00812 76 KEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLY-EKGLAYKKEAPVNWC---------------------------- 126 (314)
T ss_pred HHHHHHhccceecccccccCCHHHHHHHHHHHHHHH-HCCCEEecCceeeee----------------------------
Confidence 999999999887 6889999999999999999999 999999999999995
Q ss_pred cccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC-CCChhHHHHHHHHHhhcCCCCCccc
Q psy2393 171 CECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKEWLEKDNKFNDWDI 249 (576)
Q Consensus 171 c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~dw~i 249 (576)
+.++||||+++++++++.+.++ ++.. .+|+..++.+.+|++ |
T Consensus 127 ---------------------------~~~~~~f~~l~~~~~~~~l~~~-l~~~~~~p~~~~~~~~~~l~---------i 169 (314)
T cd00812 127 ---------------------------KLLDQWFLKYSETEWKEKLLKD-LEKLDGWPEEVRAMQENWIG---------C 169 (314)
T ss_pred ---------------------------CccceEEEEcCcHHHHHHHHHH-HHhcCcCCHHHHHHHHHHhe---------e
Confidence 3468999999888999999999 7665 589999999999985 9
Q ss_pred ccCCCCCCeecCCCCCcEEEEEeeccc---chhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhH-
Q psy2393 250 SRDAPYFGIKIPNTLEKYFYVWLDAPI---GYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHI- 325 (576)
Q Consensus 250 sR~~~~WG~~iP~~~~~~~~vw~d~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~- 325 (576)
||++ .||+|+|. ++++++|+|+.+ +|++.........|. .+. ..+.|+.|||.+ +|++|+||++||+
T Consensus 170 sR~~-~wGipvP~--~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~-~~~-~~~~~~~w~p~d----i~v~G~D~i~~h~~ 240 (314)
T cd00812 170 SRQR-YWGTPIPW--TDTMESLSDSTWYYARYTDAHNLEQPYEGD-LEF-DREEFEYWYPVD----IYIGGKEHAPNHLL 240 (314)
T ss_pred eeec-CCcCCcCc--ccccccccccHHHHHHHHhcccccCcchhh-hhh-hHHHHHHhCCCe----eeecchhHHHHHHH
Confidence 9999 99999998 789999999987 555433211000000 000 013466667643 9999999999996
Q ss_pred --hHHHHHHHhcCC---CCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccch
Q psy2393 326 --LFWPAILKFSGR---KLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNS 398 (576)
Q Consensus 326 --~~~~a~l~~~~~---~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~ 398 (576)
.+|++++.++|+ .+|+++++||||+++|+|||||+||+|+++|++++ +|+|++||++++.++ .+.+|++
T Consensus 241 ~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~~~g~KmSkS~Gn~v~~~dll~~-~~~Da~R~~ll~~~~---~~~~f~~ 314 (314)
T cd00812 241 YSRFNHKALFDEGLVTDEPPKGLIVQGMVLLEGEKMSKSKGNVVTPDEAIKK-YGADAARLYILFAAP---PDADFDW 314 (314)
T ss_pred HHHHHHHHHcCcccccccCcHHheecceEecCccccCCcCCCCCCHHHHHHH-hCcHHHHHHHHhcCC---cCCCCCC
Confidence 788899998886 77888899999999999999999999999999999 999999999999855 6678875
No 43
>KOG0434|consensus
Probab=100.00 E-value=7.6e-57 Score=460.72 Aligned_cols=492 Identities=20% Similarity=0.266 Sum_probs=370.3
Q ss_pred cCCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH-cCC-------
Q psy2393 8 FKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK-AGM------- 79 (576)
Q Consensus 8 ~~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~-~g~------- 79 (576)
.+++++|.+++|||.++|-+|-||+...+++|++.||..+.| |.|..-+||||||+|++...++ .|+
T Consensus 34 sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G-----~hVeRRFGWD~HGlPVE~eIDKkLgI~g~~dV~ 108 (1070)
T KOG0434|consen 34 SKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTG-----HHVERRFGWDTHGLPVEYEIDKKLGITGRDDVM 108 (1070)
T ss_pred hCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccc-----cceeeecccccCCCccceeechhcCCCCHHHHH
Confidence 357789999999999999999999999999999999999999 9999999999999999977654 343
Q ss_pred ---------CHHHHHHHHHHHHHHHHhhcC--ccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCcc
Q psy2393 80 ---------TPKEFINNISSNRKKYLDGFY--IKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIF 148 (576)
Q Consensus 80 ---------~~~~~~~~~~~~~~~~l~~lg--i~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~ 148 (576)
.++.++-+|..++++...++| |+||+=|.|..+.+.+.++++|++|+ +||++|++-...+|+..|.|.
T Consensus 109 kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~-~kglVYRG~kVMP~STac~TP 187 (1070)
T KOG0434|consen 109 KMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELH-EKGLVYRGFKVMPYSTACTTP 187 (1070)
T ss_pred HHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHHHHHH-hcCceecceeeeccccccCCc
Confidence 466778899999999999999 69999999999999999999999999 999999999999999999999
Q ss_pred ccccceec----------------------------cCCC--------CCCCC---------------------------
Q psy2393 149 LPDRYIKG----------------------------ECPI--------CNAKD--------------------------- 165 (576)
Q Consensus 149 l~~~~v~~----------------------------~~p~--------c~~~~--------------------------- 165 (576)
|++-|... ++|+ |..++
T Consensus 188 LSNFEa~QNYKdV~DPav~v~F~li~~~~~slvAWTTTPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~esrl~~l~k 267 (1070)
T KOG0434|consen 188 LSNFEAQQNYKDVPDPAVFVAFPLIGDPNVSLVAWTTTPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMESRLGELYK 267 (1070)
T ss_pred ccchhcccCcccCCCCeEEEEeeccCCcceeEEEEecCCccCccceeEEEcCCeEEEEEEeccCCeEEEEeHHHHHHHhc
Confidence 98765321 1121 11100
Q ss_pred ------------------------------------------------------------CCC-----------------
Q psy2393 166 ------------------------------------------------------------QYG----------------- 168 (576)
Q Consensus 166 ------------------------------------------------------------~~g----------------- 168 (576)
++|
T Consensus 268 ~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~ 347 (1070)
T KOG0434|consen 268 NPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDS 347 (1070)
T ss_pred CcccccHHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCCCceeeecCCccChhhHHHHHHcCcccCCC
Confidence 001
Q ss_pred -Cccc--cCCCcCCC-----------C-c-------------------cCCCcccCCCCccEEeeecceeEecCchhhHH
Q psy2393 169 -DFCE--CCSSIYTP-----------T-K-------------------LINPYSILSGTKPIIKSSKHFFFKLSDKRCID 214 (576)
Q Consensus 169 -~~c~--~cg~~~~~-----------~-~-------------------l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~ 214 (576)
.-|+ ..|++.+. . + -.+|.|||+.+|+.++...+||++. ..+.+
T Consensus 348 ~~~cpVDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrV--k~~v~ 425 (1070)
T KOG0434|consen 348 LPPCPVDESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRV--KNIVD 425 (1070)
T ss_pred CCCCccccCCccccccccccceeeccchHHHHHHHHhcCceeeeeeeeeccCceecCCChHHHhhccHhhhhH--HHHHH
Confidence 0121 12332111 0 0 1259999999999999999999999 99999
Q ss_pred HHHHhhhcCC-CCChhHH-HHHHHHHhhcCCCCCcccccCCCCCCeecCC--CC--C-----------------------
Q psy2393 215 FLRKWAIHDK-RLQPEIV-NKIKEWLEKDNKFNDWDISRDAPYFGIKIPN--TL--E----------------------- 265 (576)
Q Consensus 215 ~l~~~~~~~~-~~~~~~~-~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~--~~--~----------------------- 265 (576)
++++. ..+. ++|+.++ +++.+||+ +.+||.|||.| +||+|||- .+ .
T Consensus 426 ~ll~n-n~~t~WVP~~ikeKRF~NWL~---nARDW~iSRnR-~WGTPIpLWVSdD~eevVcigSi~eLEeLSG~kItDlH 500 (1070)
T KOG0434|consen 426 QLLRN-NMKTHWVPQNIKEKRFANWLK---NARDWNISRNR-YWGTPIPLWVSDDYEEVVCIGSIKELEELSGVKITDLH 500 (1070)
T ss_pred HHHhc-ccccccCChhhhHHHHHHHHh---hhhhccccccc-ccCCCcceEEccCCceEEEeccHHHHHHhcCCcchhhh
Confidence 98887 5555 5677776 89999998 99999999999 99999993 01 0
Q ss_pred ----------------------cEEEEEeecccchhhhcchhhhhCCCCCcccc--cccccccccCCCcceEEEeeecCc
Q psy2393 266 ----------------------KYFYVWLDAPIGYLASLKNFFEKGGPKKKYNE--LRNFDEFISSPNTEQYHFIGKDIF 321 (576)
Q Consensus 266 ----------------------~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~w~~~~~~~i~~~G~D~~ 321 (576)
.+++-||++.--..+. . .||. .+.|++-+|.+ .--.|-||.
T Consensus 501 Re~iD~itIps~~gkg~l~Rv~eVfDCWFESGSMPYAq------~-----HyPFenk~~fe~~fPad----FIaEGlDQT 565 (1070)
T KOG0434|consen 501 RESIDHITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQ------R-----HYPFENKEEFEENFPAD----FIAEGLDQT 565 (1070)
T ss_pred hhhcCceecccCCCCcceehhhhHhhhhhccCCCcchh------h-----cCCccchHHHhhcCchH----hhhhccccc
Confidence 1111222221000000 0 0111 12233223221 223488887
Q ss_pred --chhHhHHHHHHHhc-CCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccc
Q psy2393 322 --YFHILFWPAILKFS-GRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFN 397 (576)
Q Consensus 322 --~fh~~~~~a~l~~~-~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs 397 (576)
||++....+ .++ |.++.++++++|.|+- +|+|||||+.|..+|..++++ ||+|+||+||+.+.--....+.|.
T Consensus 566 RGWFYTL~Vls--T~LF~kppfkNvIvnGlVLAeDG~KMSKrlkNYPdP~~iink-YGADalRlYLInSPVvraE~LkFk 642 (1070)
T KOG0434|consen 566 RGWFYTLLVLS--TALFGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIINK-YGADALRLYLINSPVVRAENLKFK 642 (1070)
T ss_pred cchhhHHHHHH--HHHcCCCcchheeEeeeEEecccHHHhhhhhcCCCHHHHHHh-hcchheeeeeecCccccccccccc
Confidence 454443221 222 4444489999999999 999999999999999999999 999999999998744455678999
Q ss_pred hhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcC-CCC---C-Cccc----CChHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy2393 398 SQSFISCVNSDLIGKYINIASRSSSFIEKYFK-GYL---N-MKWV----KDNDTFLSKLRVVSSSIQKYYENRNFNKVLY 468 (576)
Q Consensus 398 ~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~-~~~---~-~~~~----~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~ 468 (576)
.+...+.. ++.+-.|+|.+....+-...... +.. . ...+ .| +|+++...++..-+++-|+.|+...++-
T Consensus 643 eeGVrevv-k~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~~~S~NvmD-rWI~a~~qslv~fv~~eM~~YrLytVvp 720 (1070)
T KOG0434|consen 643 EEGVREVV-KDVLLPWYNSYRFLVQNAALLKKETGKDFVFDDSVTSSNVMD-RWILASTQSLVGFVREEMDQYRLYTVVP 720 (1070)
T ss_pred hhhHHHHH-HhhhhhhhHHHHHHHHHHHHhccccCCccccccccccchhHH-HHHHHHHHHHHHHHHHHHHheehhhhHH
Confidence 99888877 44556788887555432221111 111 1 1111 26 9999999999999999999999999999
Q ss_pred HHHHHH-HHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 469 IVIEQT-NFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 469 ~l~~~~-~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
.+..|+ .+.|+|+..++.+.-.+ +....+..++.+|.++|..+.++++||+||++|.|||.|.-
T Consensus 721 ~llkfiD~LTNwYiR~nRrrlkGe--~G~~d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~ 785 (1070)
T KOG0434|consen 721 RLLKFIDELTNWYIRFNRRRLKGE--NGEHDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKK 785 (1070)
T ss_pred HHHHHHHHhhhhheehhhhhhcCC--CchHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh
Confidence 999999 89999999988655332 23456777889999999999999999999999999999963
No 44
>KOG0435|consensus
Probab=100.00 E-value=4.4e-57 Score=463.12 Aligned_cols=460 Identities=21% Similarity=0.256 Sum_probs=343.2
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 89 (576)
+++| ||.+..|||+|.|||||.|.|++.|+++||.||+| |+|++.+|||.+|+|.|.+|.+.|.+|..+....+
T Consensus 56 sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~G-----ynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI 129 (876)
T KOG0435|consen 56 SKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKG-----YNVIHPMGWDAFGLPAENAAIERGVHPASWTINNI 129 (876)
T ss_pred CCCc-eEEEecCCCCCcccccceEEEEehHHHHHHHHhcC-----ceeecCCcccccCCchhhHHHhcCCCchhhhHHHH
Confidence 4455 89999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCC
Q psy2393 90 SNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQY 167 (576)
Q Consensus 90 ~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~ 167 (576)
+.++++|.+||+ +||+.++|.+|+|..+.|++|.+|+ ++|++|+.+..++|||.+.|.|++.+|-
T Consensus 130 ~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLf-e~GLAYq~Ea~VNWDPvD~TVLAnEQVD------------ 196 (876)
T KOG0435|consen 130 AKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLF-EKGLAYQAEAEVNWDPVDKTVLANEQVD------------ 196 (876)
T ss_pred HHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHH-HhhhhhccccccccCcccceeecchhhc------------
Confidence 999999999999 5579999999999999999999999 9999999999999999999999865441
Q ss_pred CCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC-CCChhHHHHHHHHHhh------
Q psy2393 168 GDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKEWLEK------ 240 (576)
Q Consensus 168 g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~------ 240 (576)
.++.+||+|++|+-+..+|||+++ +++++++++. ++.- .||. +++..++|+.+
T Consensus 197 ----------------~~G~SWRSGA~VEkK~LrQWfikt--taYAk~L~d~-L~~L~~W~~-vk~mQrnWIG~~~G~el 256 (876)
T KOG0435|consen 197 ----------------ADGCSWRSGAKVEKKKLRQWFIKT--TAYAKRLLDG-LETLPEWPE-VKDMQRNWIGRCDGAEL 256 (876)
T ss_pred ----------------ccCccccccchhhHHHHHHHHhhh--hHHHHHHHHH-HHhhhhhhh-HHHHHHhhcccccceEE
Confidence 246789999999999999999999 9999999998 5554 7887 88889999875
Q ss_pred --------------------------------------------------------------------------------
Q psy2393 241 -------------------------------------------------------------------------------- 240 (576)
Q Consensus 241 -------------------------------------------------------------------------------- 240 (576)
T Consensus 257 ~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~~lkefl~~~~l~~Kg~~lp~~A~Np~tg~~iPv~~a~ 336 (876)
T KOG0435|consen 257 MFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDSSLKEFLSKSDLPQKGVQLPCQAKNPVTGRAIPVVVAD 336 (876)
T ss_pred EEEeccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhchHHHhhhhhhccccCcccceeeccCCCCceeeEEEec
Confidence
Q ss_pred -------------------------------------------------------------------------------c
Q psy2393 241 -------------------------------------------------------------------------------D 241 (576)
Q Consensus 241 -------------------------------------------------------------------------------~ 241 (576)
+
T Consensus 337 ~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~~~~~~tn~~~~q~a~~~l~~~~~~~g~g~~~vs 416 (876)
T KOG0435|consen 337 YVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKNEQKAFTNLDIRQNAALKLFQFAERKGVGGYVVS 416 (876)
T ss_pred hhccCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhhhccccccchhHHHHHHHHHHHHHHhcCCCcceec
Confidence 4
Q ss_pred CCCCCcccccCCCCCCeecCCC---CCcEEEEEeecc-------------cchhhhcch----hhhhCCCCCcccc----
Q psy2393 242 NKFNDWDISRDAPYFGIKIPNT---LEKYFYVWLDAP-------------IGYLASLKN----FFEKGGPKKKYNE---- 297 (576)
Q Consensus 242 ~~~~dw~isR~~~~WG~~iP~~---~~~~~~vw~d~~-------------~~~~~~~~~----~~~~~g~~~~~~~---- 297 (576)
..++||-||||| |||+|||.- ....+.|=.+.+ ...++.... -|..+|.+++..-
T Consensus 417 ~kLkDWLiSRQR-yWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMD 495 (876)
T KOG0435|consen 417 YKLKDWLISRQR-YWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMD 495 (876)
T ss_pred chhhhhhhhhhh-ccCCCcceEEcCCCCcccCcHHHCCcccccccccCCCCCcccchhhheeccCccCCCcccccccccc
Confidence 457899999999 999999951 111111100000 001111111 1222332211111
Q ss_pred ----------------------cccccccc-cCCCcceEEEeeecCcchh---HhHHHHHHHhcCC---CCC-cEEeeec
Q psy2393 298 ----------------------LRNFDEFI-SSPNTEQYHFIGKDIFYFH---ILFWPAILKFSGR---KLP-NNIFVHG 347 (576)
Q Consensus 298 ----------------------~~~~~~~w-~~~~~~~i~~~G~D~~~fh---~~~~~a~l~~~~~---~~p-~~~~~~g 347 (576)
+.+....| |- .++++|++|.-.| +.+|.-+|...|. +.| +.++..|
T Consensus 496 TFvDSsWYYlRylDpkN~e~~~d~a~a~k~MPV----DvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~QG 571 (876)
T KOG0435|consen 496 TFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPV----DVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQG 571 (876)
T ss_pred hhhccceeeEeecCCCCcccccchhhhhccCce----eEEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHHHhhh
Confidence 12223344 22 2999999997555 4455556666553 233 5666666
Q ss_pred cEEeC--------------------------------------CccccccCCCccChhHHhhcCCChhHHHHHHHhhCCC
Q psy2393 348 FMTIN--------------------------------------GKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNN 389 (576)
Q Consensus 348 ~v~~~--------------------------------------g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~ 389 (576)
+|... =+|||||++|+|+|.+++.+ ||+|.+|++++..+|.
T Consensus 572 mV~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~~-yG~D~tRl~ilf~ap~ 650 (876)
T KOG0435|consen 572 MVRGKTFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLE-YGVDTTRLYILFAAPP 650 (876)
T ss_pred cccceEEecCCCCccCCHHHhhhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHHH-hCchHHHHHHHhhCCc
Confidence 66531 16999999999999999999 9999999999998765
Q ss_pred CCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCC--ccc----CChHHHHHHHHHHHHHHHHHHH-hhh
Q psy2393 390 KIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNM--KWV----KDNDTFLSKLRVVSSSIQKYYE-NRN 462 (576)
Q Consensus 390 ~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~--~~~----~d~~~l~~~l~~~~~~v~~a~~-~~~ 462 (576)
. .+++.+.+.+.-. ..+..+++++..++.+ ...++..++ .++ .+...+.+..+.++.++.+.++ .+.
T Consensus 651 ~-~~~nW~es~i~Gi--~rwl~riw~l~~~~~~---ar~~g~~~d~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~s 724 (876)
T KOG0435|consen 651 R-DPINWNESAIPGI--KRWLQRIWALVSQILQ---ARDDGKAKDLKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFS 724 (876)
T ss_pred c-cccccccccchhH--HHHHHHHHHHHHHHHH---HHhcCCcccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4 6667775544322 3346666666654433 222232222 111 1225788999999999999996 677
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCC
Q psy2393 463 FNKVLYIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNIS 535 (576)
Q Consensus 463 ~~~~~~~l~~~~~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~ 535 (576)
++.++..++.|.+...+-+.....+. + ....+|..+.++|+|++||.|+|+|..|+..
T Consensus 725 lNtaIS~~m~ltN~l~~a~k~~~~h~----~-----------~~~~al~~lv~mlaP~aPh~asE~Ws~l~~~ 782 (876)
T KOG0435|consen 725 LNTAISDMMGLTNALKKALKIVLVHS----P-----------EFERALEALVIMLAPFAPHVASELWSALAND 782 (876)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcC----h-----------HHHHHHHHHHHHHhccCchhHHHHHHHHhcc
Confidence 99999999998876555444333221 0 1113566788999999999999999999954
No 45
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=4.6e-49 Score=429.56 Aligned_cols=384 Identities=14% Similarity=0.142 Sum_probs=280.3
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHh-hcCCCCCCcceEEecCCCcccHHHHHHHHHcCCC-HHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQC-MQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMT-PKEFINNISS 90 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~-~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~-~~~~~~~~~~ 90 (576)
++|+|+ ||+++.+||||||++|.+|+++||++ ++| |+|.||+|+||||++|+.+|++.|++ +.+++++|.+
T Consensus 62 ~~Y~CG--PTvYd~~HiGhart~v~~Dil~R~l~~~~G-----y~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~ 134 (651)
T PTZ00399 62 RWYTCG--PTVYDSSHLGHARTYVTFDIIRRILEDYFG-----YDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEK 134 (651)
T ss_pred EEEEeC--CCccCCcccccchHHHHHHHHHHHHHHhcC-----CceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHH
Confidence 556666 78889999999999999999999999 999 99999999999999999999999999 9999999999
Q ss_pred HHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCc
Q psy2393 91 NRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDF 170 (576)
Q Consensus 91 ~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~ 170 (576)
.|.++|++|||.++.++.+. .+|...+..++.+|. ++|++|+..+.+|||...
T Consensus 135 ~f~~d~~~Lni~~p~~~~r~-tehi~~ii~~i~~Li-~~G~aY~~~gsvyFd~~~------------------------- 187 (651)
T PTZ00399 135 EFFEDMKALNVRPPDVITRV-SEYVPEIVDFIQKII-DNGFAYESNGSVYFDVEA------------------------- 187 (651)
T ss_pred HHHHHHHHcCCCCCccccCc-CccHHHHHHHHHHHH-HCCCEEEECCeEEEEchh-------------------------
Confidence 99999999999886666555 489999999999999 999999988888775433
Q ss_pred cccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHH-HHHHHHHhhcCC-CCCcc
Q psy2393 171 CECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIV-NKIKEWLEKDNK-FNDWD 248 (576)
Q Consensus 171 c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~l~~~~~-~~dw~ 248 (576)
+.+. ... +.+ +.|..+ +....... .+ +.+-+
T Consensus 188 -----------------------------------------f~~~-~~~-Yg~--L~p~~~~~~~~~~~g--~~~l~~~~ 220 (651)
T PTZ00399 188 -----------------------------------------FRKA-GHV-YPK--LEPESVADEDRIAEG--EGALGKVS 220 (651)
T ss_pred -----------------------------------------cccc-hhh-HHh--hChhhcCCHHHHhcc--cCCccccC
Confidence 2111 000 000 111111 11111111 11 22222
Q ss_pred -cccCCCC---CCeecCCCCCcEEEEEeecccc------hhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeee
Q psy2393 249 -ISRDAPY---FGIKIPNTLEKYFYVWLDAPIG------YLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGK 318 (576)
Q Consensus 249 -isR~~~~---WG~~iP~~~~~~~~vw~d~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~ 318 (576)
++|...+ ||.+.|+++. |. ++.| ++.+..-...-.| . .-.||.+|.
T Consensus 221 ~~Kr~~~DFaLWk~~kpgep~-----W~-SpwG~GrPGWHiECsam~~~~lg--------~----------~~DIh~gG~ 276 (651)
T PTZ00399 221 GEKRSPNDFALWKASKPGEPS-----WD-SPWGKGRPGWHIECSAMASNILG--------D----------PIDIHSGGI 276 (651)
T ss_pred cCCCCCccHHhhCCCCCCCCC-----CC-CCCCCCCCCchHHHHHHHHHHcC--------C----------cceeeccCC
Confidence 4554334 6766665433 32 2222 2211110011112 1 112999999
Q ss_pred cCcchhHhHHHHHHHhc-CC-CCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCccc
Q psy2393 319 DIFYFHILFWPAILKFS-GR-KLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDF 396 (576)
Q Consensus 319 D~~~fh~~~~~a~l~~~-~~-~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~f 396 (576)
|++|+||.+..|+..++ |. +.+++++|+|||+++|+|||||+||+|+|+|+++. ||+|++|||+++. ++..+++|
T Consensus 277 DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~i~G~KMSKSLGNfItp~dlLek-ygaDaLR~~lLs~--~~~~dldF 353 (651)
T PTZ00399 277 DLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQALSK-YTARQIRLLFLLH--KWDKPMNY 353 (651)
T ss_pred CCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEEeccchhhhcCCCcccHHHHHHH-cChHHHHHHHHhc--CCCCCCcc
Confidence 99999999999998886 43 44578888899999999999999999999999999 9999999999986 67789999
Q ss_pred chhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCccc-CChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHH
Q psy2393 397 NSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNMKWV-KDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQT 474 (576)
Q Consensus 397 s~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~-~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~~ 474 (576)
|++.+.+..+. .+.+.|++.|+.+++.+..... +..+. .| .+|+..+..+.+.+.+++ ++|+++.|+..|++|+
T Consensus 354 S~e~l~~a~~~--~~~l~n~~~rl~s~l~~~~~~~-~~~~~~~d-~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eLv 429 (651)
T PTZ00399 354 SDESMDEAIEK--DKVFFNFFANVKIKLRESELTS-PQKWTQHD-FELNELFEETKSAVHAALLDNFDTPEALQALQKLI 429 (651)
T ss_pred CHHHHHHHHHH--HHHHHHHHHHHHHHHhhccccc-cccCCHHH-HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99988777544 5678888888877665421100 11122 24 889999999999999999 7899999999999999
Q ss_pred HHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHH
Q psy2393 475 NFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTI 515 (576)
Q Consensus 475 ~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ 515 (576)
..+|.|++.. .......+.++..++..++.+|++
T Consensus 430 ~~~N~yi~~~-------~~~~~~ll~~v~~~l~~~l~ILGl 463 (651)
T PTZ00399 430 SATNTYLNSG-------EQPSAPLLRSVAQYVTKILSIFGL 463 (651)
T ss_pred HHHHHHHhcc-------ccchHHHHHHHHHHHHHHHhcccC
Confidence 9999999621 111122244555666677777776
No 46
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=8.9e-48 Score=406.81 Aligned_cols=360 Identities=15% Similarity=0.139 Sum_probs=268.3
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
-++|+| .|||+|++||||+|++|.+|+++||+++.| ++|.||+|+||||+||+.+|++.|+++.+++++|.+.
T Consensus 81 v~~Y~C--GpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~G-----y~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~ 153 (557)
T PLN02946 81 VGMYVC--GVTAYDLSHIGHARVYVTFDVLYRYLKHLG-----YEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEE 153 (557)
T ss_pred eeEEEe--CCccCCCCccccchhhHHHHHHHHHHHhcC-----CcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 355666 499999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCcc
Q psy2393 92 RKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFC 171 (576)
Q Consensus 92 ~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c 171 (576)
|.++|++|||. +.+++|...+|...++.++++|. +||++|+..+.+|||...-. .||..+
T Consensus 154 f~~d~~~LnI~-~p~~~pratehi~~ii~~i~~Li-~kG~aY~~~g~VYFdv~~f~------------------~YG~Ls 213 (557)
T PLN02946 154 FLSDMAYLHCL-PPSVEPRVSDHIPQIIDMIKQIL-DNGCAYRVDGDVYFSVDKFP------------------EYGKLS 213 (557)
T ss_pred HHHHHHHCCCC-CCCeecCcchhHHHHHHHHHHHH-HCCCEEEECCeEEEecCcch------------------hhhhcC
Confidence 99999999997 44556666799999999999999 99999999999999876531 244322
Q ss_pred ccCCCcCCCCccCCCcccCCCCccEE--eeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCccc
Q psy2393 172 ECCSSIYTPTKLINPYSILSGTKPII--KSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDI 249 (576)
Q Consensus 172 ~~cg~~~~~~~l~~p~~~~~~~~~~~--~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~i 249 (576)
- + +.+++ +.|..++. ...+.--|.| | +.. ..|-.-|
T Consensus 214 ~---~--~l~~l------~~g~rv~~~~~K~np~DFaL-----------W--K~~----------------k~ge~~W-- 251 (557)
T PLN02946 214 G---R--KLEDN------RAGERVAVDSRKKNPADFAL-----------W--KAA----------------KEGEPFW-- 251 (557)
T ss_pred C---C--ChhHh------hcCCCCCcccccCCccccce-----------e--ccC----------------CCCCCCc--
Confidence 1 0 00111 11211111 1111111222 1 000 0111223
Q ss_pred ccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHH
Q psy2393 250 SRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWP 329 (576)
Q Consensus 250 sR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~ 329 (576)
.. .||...|+ | ++.+.....+-.| ..++ ||.+|.|++|+||.+..
T Consensus 252 --~S-PWG~GRPG--------W------HIECSaMs~~~lG--------~~~D----------IH~GG~DL~FPHHENEi 296 (557)
T PLN02946 252 --DS-PWGPGRPG--------W------HIECSAMSAAYLG--------HSFD----------IHGGGMDLVFPHHENEI 296 (557)
T ss_pred --cC-CCCCCCCc--------H------HHHHHHHHHHHcC--------CCee----------EeccccccCCCcccchH
Confidence 33 57766664 2 3333222222233 2333 99999999999999999
Q ss_pred HHHHhc-CCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHH
Q psy2393 330 AILKFS-GRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSD 408 (576)
Q Consensus 330 a~l~~~-~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~ 408 (576)
|+..+. |.+..++|+|+|||+++|+|||||+||+++++|++++ |++|++|||+++. +++.+++|+++.+.... .
T Consensus 297 AQsea~~g~~~a~yW~H~G~v~~~G~KMSKSlGN~itl~dll~~-y~~dalR~~lLs~--hyr~~l~fs~e~L~~a~--~ 371 (557)
T PLN02946 297 AQSCAACCDSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDL-YHPLALRLFLLGT--HYRSPINYSDVQLESAS--E 371 (557)
T ss_pred HHHHHHhCCCCCceeeEeeEEEeCCCCcCCcCCCcCCHHHHHHh-cCccceeeeeecc--CCCCCcEecHHHHHHHH--H
Confidence 988874 5555589999999999999999999999999999999 9999999999987 78899999999876663 3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhhhh
Q psy2393 409 LIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQTNFINIFFDQ 483 (576)
Q Consensus 409 ~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~~~~~n~y~~~ 483 (576)
.+.++.+++.|+.+.+.+.... ... ...+ ..+...+..+.+.+.+|| ++++++.|+..|+++++..|.+++.
T Consensus 372 ~l~~l~~~~~~~~~~l~~~~~~-~~~-~~~~-~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~vk~~N~~~~~ 444 (557)
T PLN02946 372 RIFYIYQTLHDCEESLQQHDST-FEK-DSVP-PDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPLKTINDLLHT 444 (557)
T ss_pred HHHHHHHHHHHHHHHhhhhccc-ccc-cccc-hhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhh
Confidence 4678889998887666432110 000 0011 233445667778899999 6999999999999999999998864
No 47
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=4.3e-47 Score=403.48 Aligned_cols=349 Identities=20% Similarity=0.273 Sum_probs=260.0
Q ss_pred CCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHH
Q psy2393 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISS 90 (576)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 90 (576)
..++|+|. |||||++||||+|+++.+|+++||+|++| ++|.|++|+||+|++|+.+|++.|.+|+++++++.+
T Consensus 23 ~v~~yvcg--Ptvy~~~HiGHar~~v~~Dvl~R~lr~~G-----~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~ 95 (463)
T PRK00260 23 KVKMYVCG--PTVYDYAHIGHARSFVVFDVLRRYLRYLG-----YKVTYVRNITDIDDKIIKRANEEGESIKELTERYIA 95 (463)
T ss_pred cceEEEeC--CccCCCcccccchhHHHHHHHHHHHHhcC-----CceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34666665 88899999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCc-cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCC
Q psy2393 91 NRKKYLDGFYI-KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGD 169 (576)
Q Consensus 91 ~~~~~l~~lgi-~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~ 169 (576)
.|.++|++||| .+|.+.+++ +|...+++++++|. ++|++|+++++++||+.+-. .||.
T Consensus 96 ~f~~~~~~Lgi~~~d~~~r~t--~~~~~~~~~i~~L~-~kG~aY~~~~~Vyfdv~~~~------------------~yg~ 154 (463)
T PRK00260 96 AFHEDMDALNVLPPDIEPRAT--EHIPEIIELIERLI-DKGHAYEADGDVYFDVRKFP------------------DYGK 154 (463)
T ss_pred HHHHHHHHcCCCCCCcccccc--ccHHHHHHHHHHHH-HCCCEEEecCeEEEeccccc------------------cccc
Confidence 99999999999 668777776 68999999999999 99999999999999987531 1332
Q ss_pred ccccCCCcCCCCccCCCcccCCCCccEE--eeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCc
Q psy2393 170 FCECCSSIYTPTKLINPYSILSGTKPII--KSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDW 247 (576)
Q Consensus 170 ~c~~cg~~~~~~~l~~p~~~~~~~~~~~--~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw 247 (576)
..- .+.+++. .|..+.. .....--|.| |... ..|-.-|
T Consensus 155 ls~-----~~~~~~~------~~~~~~~~~~K~~~~DF~L------------------wk~~-----------~~~~~~w 194 (463)
T PRK00260 155 LSG-----RNLDELQ------AGARVEVAEEKRDPLDFAL------------------WKAA-----------KPGEPSW 194 (463)
T ss_pred CCC-----CCHHHHh------ccCcCCcccCCCCccccce------------------ecCC-----------CCCCCCC
Confidence 210 0000110 1111110 0000011111 1000 0011112
Q ss_pred ccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhH
Q psy2393 248 DISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILF 327 (576)
Q Consensus 248 ~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~ 327 (576)
.. .||...|+ | ++.+.....+..| ..++ ||.+|.|++|+|+.+
T Consensus 195 ----~s-~~g~grpg--------W------hiecsam~~~~lg--------~~~D----------ih~gG~DlifpHh~n 237 (463)
T PRK00260 195 ----ES-PWGKGRPG--------W------HIECSAMSTKYLG--------ETFD----------IHGGGADLIFPHHEN 237 (463)
T ss_pred ----CC-CCCCCCCC--------h------hHHHHHHHHHhcC--------CCcc----------eecCccccCCCchHh
Confidence 22 35544443 2 2222111111122 1223 999999999999999
Q ss_pred HHHHHHh-cCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhh
Q psy2393 328 WPAILKF-SGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVN 406 (576)
Q Consensus 328 ~~a~l~~-~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~ 406 (576)
..|+..+ .|.+.++.++|+|||..+|+|||||+||+|+++|+++. ||+|++||++++. +++.+++|+.+.+....
T Consensus 238 eiaqs~a~~g~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~-~~~d~lR~~ll~~--~~~~~~~fs~~~l~~a~- 313 (463)
T PRK00260 238 EIAQSEAATGKPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKK-YDPEVLRFFLLSA--HYRSPLNFSEEALEQAK- 313 (463)
T ss_pred HHHHHHHhcCCCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHH-cCchHhHHHHHhC--CCCCCCccCHHHHHHHH-
Confidence 9987666 45444578999999999999999999999999999999 9999999999986 67789999999766553
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhhhh
Q psy2393 407 SDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQTNFINIFFDQ 483 (576)
Q Consensus 407 ~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~~~~~n~y~~~ 483 (576)
..+++++|++.++.. ...| .++...+..+.+.+.++| ++|+++.|+..|+++++..|.|++.
T Consensus 314 -~~~~rl~~~~~~~~~-------------~~~d-~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv~~~n~~~~~ 376 (463)
T PRK00260 314 -KALERLYNALAETAL-------------GEDD-EALLAELEEFKERFIEAMDDDFNTPEALAVLFELAREINRALET 376 (463)
T ss_pred -HHHHHHHHHHHHhhh-------------ccch-hhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhc
Confidence 347788887755420 0124 788889999999999999 5999999999999999999999865
No 48
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.7e-47 Score=401.02 Aligned_cols=363 Identities=15% Similarity=0.142 Sum_probs=260.0
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcc----------cHHHHHHHHHcCCCHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAH----------GAAIMIAAEKAGMTPK 82 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~----------G~~i~~~a~~~g~~~~ 82 (576)
++-++.+.||||+++||||+|++|.+|+++||++++| ++|.||+|++|. |++|+.+|++.|++|.
T Consensus 23 ~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G-----~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~ 97 (490)
T PRK14536 23 HVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLG-----YRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVL 97 (490)
T ss_pred ceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcC-----CceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHH
Confidence 3444444599999999999999999999999999999 999999855555 9999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCC
Q psy2393 83 EFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICN 162 (576)
Q Consensus 83 ~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~ 162 (576)
+++++|.+.|.++|++|||.++.++ +...+|...++.++++|. ++|++|+..+.+|||+..
T Consensus 98 e~a~~~~~~f~~d~~~Lni~~~~~~-~rat~hi~~ii~~i~~L~-~kG~aY~~~~~vyFdv~~----------------- 158 (490)
T PRK14536 98 EIAAHYTAAFFRDTARLNIERPSIV-CNATEHIQDMIALIKRLE-ARGHTYCAGGNVYFDIRT----------------- 158 (490)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcee-cCcccHHHHHHHHHHHHH-HCCCEEEECCeEEEeCCc-----------------
Confidence 9999999999999999999886555 334689999999999999 999999999999998743
Q ss_pred CCCCCCCccccCCCc--CCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhh
Q psy2393 163 AKDQYGDFCECCSSI--YTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEK 240 (576)
Q Consensus 163 ~~~~~g~~c~~cg~~--~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 240 (576)
|+.||+. .+.+++. .|..+... ..++.. ..+.-|..+
T Consensus 159 --------~~~YG~Ls~~~~~~l~------~g~~v~~~------------~~K~np---------------~DFaLWK~~ 197 (490)
T PRK14536 159 --------FPSYGSLASAAVEDLQ------AGARIEHD------------TNKRNP---------------HDFVLWFTR 197 (490)
T ss_pred --------ccchhhhcCCCHHHhh------cCCcCCCC------------CCCCCc---------------hhchhcccc
Confidence 2223321 0111111 11111100 000000 001112110
Q ss_pred cCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecC
Q psy2393 241 DNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDI 320 (576)
Q Consensus 241 ~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~ 320 (576)
.+.++..+++.. .||.+.|+ | ++.+.....+-.| ..++ ||.+|.|+
T Consensus 198 -~~~~~~~~~W~S-pWG~GRPG--------W------HIECsaMs~~~lg--------~~~D----------IH~GG~Dl 243 (490)
T PRK14536 198 -SKFENHALTWDS-PWGRGYPG--------W------HIECSAMSMKYLG--------EQCD----------IHIGGVDH 243 (490)
T ss_pred -cCCCCCCCcccC-CCCCCCCC--------h------HHHHHHHHHHHcC--------Ccee----------EEeccccC
Confidence 112233456666 79999886 4 3333222222223 2233 99999999
Q ss_pred cchhHhHHHHHHHhc-CCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchh
Q psy2393 321 FYFHILFWPAILKFS-GRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQ 399 (576)
Q Consensus 321 ~~fh~~~~~a~l~~~-~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~ 399 (576)
+||||.+++|+.+++ |.+.+++|+|+||+.++|+|||||+||+|+++|+++.|++++++||+++++ +++.+++||++
T Consensus 244 iFPHHeneiAqs~a~~g~~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~--~yr~~l~Fs~e 321 (490)
T PRK14536 244 IRVHHTNEIAQCEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGG--HYRSQLAFSWE 321 (490)
T ss_pred CCcchhhHHHHHHHhcCCCcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhC--CCCCCCCCCHH
Confidence 999999999998885 667779999999999999999999999999999999889999999999997 88899999999
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHcC---CCCCCccc--CChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHH
Q psy2393 400 SFISCVNSDLIGKYINIASRSSSFIEKYFK---GYLNMKWV--KDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQ 473 (576)
Q Consensus 400 ~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~---~~~~~~~~--~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~ 473 (576)
.+.+..+ .+.++.+++.++......... +....... .. ..+...+..+.+.+.+|| ++++++.|+..|+++
T Consensus 322 ~l~~a~~--~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~al~dDlntp~Al~~l~~~ 398 (490)
T PRK14536 322 ALKTAKA--ARRSLVRRVARVVDAARATTGSVRGTLAECAAERVA-ESRASESELLLTDFRAALEDDFSTPKALSELQKL 398 (490)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHhhhccccccccccccccccccc-chhhhhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 9877754 366676766655322111000 00000000 00 111233456778888999 689999999999999
Q ss_pred HHHHHH
Q psy2393 474 TNFINI 479 (576)
Q Consensus 474 ~~~~n~ 479 (576)
++..|.
T Consensus 399 ~~~~n~ 404 (490)
T PRK14536 399 VKDTSV 404 (490)
T ss_pred HHHhhh
Confidence 987774
No 49
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=6.5e-46 Score=393.22 Aligned_cols=350 Identities=19% Similarity=0.218 Sum_probs=252.4
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 89 (576)
++-++|+|. |||||++||||+|++|.+|+++||++++| ++|.|++|+||||++|+.+|++.|++|.++++++.
T Consensus 20 ~~v~~yvcg--ptvy~~~HiGhar~~v~~Dvl~R~lr~~G-----~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~ 92 (465)
T TIGR00435 20 GKVKMYVCG--PTVYDYCHIGHARTAIVFDVLRRYLRYLG-----YKVQYVQNITDIDDKIIKRARENGESVYEVSERFI 92 (465)
T ss_pred CcceEEEec--CccCCCcccccchHHHHHHHHHHHHHHcC-----CcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHH
Confidence 344666666 79999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCccccccc-cCCChhhHHHHHHHHHHHHhcCCcEEecc-eeeeecCCCCccccccceeccCCCCCCCCCC
Q psy2393 90 SNRKKYLDGFYIKFDNWY-STDSIENIDLVQKIYDTLYNKAKLIINKK-INQFFDPIKNIFLPDRYIKGECPICNAKDQY 167 (576)
Q Consensus 90 ~~~~~~l~~lgi~~d~~~-~t~~~~~~~~v~~~~~~L~~~~g~iy~~~-~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~ 167 (576)
+.|.+++++|||++|.+. +++ .|...+.+++++|. ++|++|+.+ +.+|||+.+.. .|
T Consensus 93 ~~f~~dl~~LgI~~d~~~~raT--~hi~~i~~~i~~L~-ekG~aY~~~~g~vyfdv~~~~------------------~y 151 (465)
T TIGR00435 93 EAYFEDMKALNVLPPDLEPRAT--EHIDEIIEFIEQLI-EKGYAYVSDNGDVYFDVSKFK------------------DY 151 (465)
T ss_pred HHHHHHHHHhCCCCCcCCcccc--ccHHHHHHHHHHHH-HCCCEEEecCCcEEEeccccc------------------hh
Confidence 999999999999998754 544 79999999999999 999999998 99999987632 12
Q ss_pred CCccccCCCcCCCCccCCCcccCCCCccEE--eeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCC
Q psy2393 168 GDFCECCSSIYTPTKLINPYSILSGTKPII--KSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFN 245 (576)
Q Consensus 168 g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~--~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 245 (576)
|... ++ +.+++. .|..+.. .....--|.| |... ..|-.
T Consensus 152 G~ls---~~--~~~~~~------~~~~~~~~~~K~~p~DF~L------------------wk~~-----------~~~~~ 191 (465)
T TIGR00435 152 GKLS---KQ--DLDQLE------AGARVDVDEAKRNKLDFVL------------------WKSS-----------KEGEP 191 (465)
T ss_pred ccCC---CC--CHHHHh------cccccCcccccCCCCCcee------------------eCCC-----------CCCCC
Confidence 2111 00 000000 0000000 0000011111 0000 01111
Q ss_pred CcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhH
Q psy2393 246 DWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHI 325 (576)
Q Consensus 246 dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~ 325 (576)
.| .. .||...|+ | ++.+.....+-.| ..++ +|.+|.|++|+|+
T Consensus 192 ~w----~s-pwG~grpg--------W------hiecsam~~~~lg--------~~~D----------ih~gG~Dl~fpHh 234 (465)
T TIGR00435 192 KW----DS-PWGKGRPG--------W------HIECSAMNDKYLG--------DQID----------IHGGGVDLIFPHH 234 (465)
T ss_pred CC----cC-CCCCCCCC--------c------HhHHHHHHHHhcC--------CCce----------eeccccccccchH
Confidence 22 22 46655554 2 2221111111122 1222 9999999999999
Q ss_pred hHHHHHHHhc-CCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhh
Q psy2393 326 LFWPAILKFS-GRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISC 404 (576)
Q Consensus 326 ~~~~a~l~~~-~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~ 404 (576)
.++.|+..++ |.+.+++++|+|||.++|+|||||+||+|+++|+++. ||+|++|||+++. +++.+++|+++.+.+.
T Consensus 235 ene~aqs~a~~g~~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~-~~~dalR~~ll~~--~~~~~l~fs~~~l~~a 311 (465)
T TIGR00435 235 ENEIAQSEAAFGKQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKN-YDPEILRYFLLSV--HYRSPLDFSEELLEAA 311 (465)
T ss_pred HHHHHHHHHhcCCCCCcEEEEeeEEEecCccccccCCCcCCHHHHHHH-CCHHHHHHHHHhC--CCCCCCccCHHHHHHH
Confidence 9999987774 6556689999999999999999999999999999999 9999999999986 6778999999987776
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHH
Q psy2393 405 VNSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQTNFIN 478 (576)
Q Consensus 405 ~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~~~~~n 478 (576)
. ..+.+++|++.++..... +... .. ..+......+.+.+.+|| ++++++.|+..|+++++..|
T Consensus 312 ~--~~~~rl~~~~~~~~~~~~----~~~~--~~---~~~~~~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n 375 (465)
T TIGR00435 312 K--NALERLYKALRVLDTTLA----YSGN--QS---LNKFPDEKEFEARFVEAMDDDLNTANALAVLFELAKSIN 375 (465)
T ss_pred H--HHHHHHHHHHHHHHhhhc----cccc--cc---cccchhHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhh
Confidence 4 458888898877643221 1000 00 001112334567788888 68999999999999999888
No 50
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.7e-46 Score=387.38 Aligned_cols=364 Identities=18% Similarity=0.190 Sum_probs=261.9
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcc----------cHHHHHHHHHcCCCH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAH----------GAAIMIAAEKAGMTP 81 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~----------G~~i~~~a~~~g~~~ 81 (576)
.++-++.+.|||++.+||||+|++|.+|+++||++++| ++|.||.|++|. |++|+.+|++.|+++
T Consensus 20 ~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G-----~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~ 94 (481)
T PRK14534 20 SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLK-----YNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTV 94 (481)
T ss_pred CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcC-----CceEEEEeccccccccCCccCCCcHHHHHHHHcCCCH
Confidence 34445555699999999999999999999999999999 999997777776 899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCC
Q psy2393 82 KEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPIC 161 (576)
Q Consensus 82 ~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c 161 (576)
.+++++|.+.|.+++++|||.++.++.+. .+|...++.++++|. ++|++|+..+.+|||+.+-.
T Consensus 95 ~e~a~~~~~~f~~d~~~Lni~~~~~~p~a-tehi~~~i~~i~~L~-~kG~aY~~~~~vyFdv~~~~-------------- 158 (481)
T PRK14534 95 YEISRFFTEAFFDDCKKLNIVYPDKVLVA-SEYIPIMIEVVKVLE-ENGFTYFVNGNVYFDTSCFK-------------- 158 (481)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCceecCc-cchHHHHHHHHHHHH-HCCCEEEECCeEEEeccccc--------------
Confidence 99999999999999999999999888764 589999999999999 99999999999999987621
Q ss_pred CCCCCCCCccccCCCcCCCCccCC-CcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhh
Q psy2393 162 NAKDQYGDFCECCSSIYTPTKLIN-PYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEK 240 (576)
Q Consensus 162 ~~~~~~g~~c~~cg~~~~~~~l~~-p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 240 (576)
.||..+ | .++.+ +.|. |..+. + ...++....+ .-|-.
T Consensus 159 ----~YG~ls---~-----~~l~~l~~~~--~~~v~----------~--~~~K~np~DF---------------aLWK~- 196 (481)
T PRK14534 159 ----SYGQMA---G-----INLNDFKDMS--VSRVE----------I--DKSKRNKSDF---------------VLWFT- 196 (481)
T ss_pred ----chhhhc---C-----CCHHHHhhhc--cCcCC----------c--ccCCCCcccc---------------hhcCc-
Confidence 233221 0 01111 0110 11010 0 0000000000 01110
Q ss_pred cCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecC
Q psy2393 241 DNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDI 320 (576)
Q Consensus 241 ~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~ 320 (576)
..++++..+++.. .||...|+ | ++.+.....+..| ..+ .||++|.|+
T Consensus 197 ~~~~~~~~~~w~s-pWG~GrPg--------W------HiECsam~~~~lg--------~~~----------DIH~GG~Dl 243 (481)
T PRK14534 197 NSKFKDQEMKWDS-PWGFGYPS--------W------HLECAAMNLEYFK--------STL----------DIHLGGVDH 243 (481)
T ss_pred CCcCCCCCCeecC-CCCCcCCc--------H------HHHHHHHHHHHcC--------Ccc----------eEEeccccc
Confidence 0134455667777 79988885 2 4433221122222 122 299999999
Q ss_pred cchhHhHHHHHHHhc-CCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchh
Q psy2393 321 FYFHILFWPAILKFS-GRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQ 399 (576)
Q Consensus 321 ~~fh~~~~~a~l~~~-~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~ 399 (576)
+|||+.+++|+.++. |.+.+++|+|+||++++|+|||||+||+++++|++++|++++++||++++. +++.+++||++
T Consensus 244 iFPHHene~Aqs~a~~g~~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls~--~yr~~l~Fs~e 321 (481)
T PRK14534 244 IGVHHINEIAIAECYLNKKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTA--HYRTQLKFTFN 321 (481)
T ss_pred CCCcchhHHHHHhhhcCCCcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHhC--CCCCCCCCCHH
Confidence 999999999998874 677789999999999999999999999999999999779999999999987 88899999999
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHcCC-CCCCcccCChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHH
Q psy2393 400 SFISCVNSDLIGKYINIASRSSSFIEKYFKG-YLNMKWVKDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQTNFI 477 (576)
Q Consensus 400 ~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~-~~~~~~~~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~~~~~ 477 (576)
.+.+..+ .+.++.+.+.++...+.. ..+ ..... . + .........+.+.+.+|| ++++++.|+..|+++++..
T Consensus 322 ~l~~a~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~-~~~~~~~~~~~~~f~~Al~DDlNtp~Al~~l~~~~k~~ 395 (481)
T PRK14534 322 NLKACKI--ARENMLNKLTYFYSSLDQ-FDLNLLNKD-L-E-NIEFSLEKEYYDSFLEKIAFDLNIPQGLALLWDIIKDD 395 (481)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHhhhh-ccccccccc-c-c-cchhhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Confidence 8877743 255666655544322211 010 00100 0 1 000011234556788888 6899999999999999888
Q ss_pred HH
Q psy2393 478 NI 479 (576)
Q Consensus 478 n~ 479 (576)
|.
T Consensus 396 n~ 397 (481)
T PRK14534 396 NL 397 (481)
T ss_pred HH
Confidence 86
No 51
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.7e-46 Score=382.77 Aligned_cols=349 Identities=14% Similarity=0.156 Sum_probs=251.0
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
-++|+|. |||++++||||+|++|.+|+++||++++| ++|.|++|+||||+||+.+|+++|++|++++++|.+.
T Consensus 10 v~~YvCG--pTvY~~~HIGh~r~~V~~Dvl~R~lr~~G-----~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~ 82 (384)
T PRK12418 10 ATMYVCG--ITPYDATHLGHAATYLAFDLVNRVWRDAG-----HDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIAL 82 (384)
T ss_pred eEEEecC--CCCCCCCccchhHHHHHHHHHHHHHHHcC-----CceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3677776 67779999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhhcCc-cccccccCCChhhHHHHHHHHHHHHhcCCcEEecce----eeeecCCCCccccccceeccCCCCCCCCC
Q psy2393 92 RKKYLDGFYI-KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKI----NQFFDPIKNIFLPDRYIKGECPICNAKDQ 166 (576)
Q Consensus 92 ~~~~l~~lgi-~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~----~~~~~~~~~~~l~~~~v~~~~p~c~~~~~ 166 (576)
|.+++++||| .+|.++++++ +.+.+++++++|. ++|++|++.. .+||+...-. .
T Consensus 83 f~~d~~~Lni~~~~~~~raTe--~i~~~~~~i~~L~-~kG~aY~~~~~~~~~VYFdv~~~~------------------~ 141 (384)
T PRK12418 83 FREDMEALRVLPPRDYVGAVE--SIPEVVELVEKLL-ASGAAYVVDDEEYPDVYFSVDATP------------------Q 141 (384)
T ss_pred HHHHHHHhCCCCCCccccCCC--CHHHHHHHHHHHH-HCCCEEEeCCCCCccEEEecCchh------------------h
Confidence 9999999998 8899999985 6999999999999 9999999998 7999865421 2
Q ss_pred CCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCC
Q psy2393 167 YGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFND 246 (576)
Q Consensus 167 ~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d 246 (576)
||... ++ +.+++......++..+-...+.+.--|-| | .. .. .+-
T Consensus 142 YG~ls---~~--~~~~~~~~~~~~~~~~~~~~K~~p~DFaL-----------W-------K~--------~~---~~~-- 185 (384)
T PRK12418 142 FGYES---GY--DRATMLELFAERGGDPDRPGKRDPLDALL-----------W-------RA--------AR---PGE-- 185 (384)
T ss_pred ccccc---CC--CHHHHHhhhcccccCcccccCCCccccee-----------e-------cc--------CC---CCC--
Confidence 33221 00 00000000000000000000000001111 1 00 00 011
Q ss_pred cccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHh
Q psy2393 247 WDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHIL 326 (576)
Q Consensus 247 w~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~ 326 (576)
++.+. .||...|+ | ++.+..-..+..| ..++ ||.+|.|++|+|+.
T Consensus 186 --~~w~s-pwG~GRPG--------W------HiECsam~~~~lg--------~~~D----------IH~GG~DL~FPHHe 230 (384)
T PRK12418 186 --PSWPS-PFGPGRPG--------W------HIECSAIALNRLG--------SGFD----------IQGGGSDLIFPHHE 230 (384)
T ss_pred --CcccC-CCCCCCCh--------h------HHHHHHHHHHHcC--------CCcc----------cccCccccccchhH
Confidence 12233 57766664 2 3333222222233 2233 99999999999999
Q ss_pred HHHHHHHhc-CC-CCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhh
Q psy2393 327 FWPAILKFS-GR-KLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISC 404 (576)
Q Consensus 327 ~~~a~l~~~-~~-~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~ 404 (576)
++.|+.+++ |. +.++.|+|.|+|..+|+|||||+||+|++.++++.|+.++++|||+++. +++.+++|+++.+.+.
T Consensus 231 neiaq~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~--~yr~~l~fs~e~l~~a 308 (384)
T PRK12418 231 FSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAG--HYRADREWTDAVLAEA 308 (384)
T ss_pred hHHHHHHHhcCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEecc--CCCCCcccCHHHHHHH
Confidence 999988875 44 4557888889999999999999999999999987678888999999865 7889999999987665
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhhhh
Q psy2393 405 VNSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQTNFINIFFDQ 483 (576)
Q Consensus 405 ~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~~~~~n~y~~~ 483 (576)
. ..+.++.+++.+. . . . .+..+.+.+.+|+ ++++++.|+..|+++++.+|.|...
T Consensus 309 ~--~~l~r~~~~~~~~--------~---------~-~----~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~~~ 364 (384)
T PRK12418 309 E--ARLARWRAAAALP--------A---------G-P----DAADVVARVRAALADDLDTPGALAAVDGWATDALEGGGD 364 (384)
T ss_pred H--HHHHHHHHHHhcc--------c---------c-c----hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhccCC
Confidence 3 2355565554321 0 0 1 1233457788888 6899999999999999999999866
Q ss_pred cC
Q psy2393 484 NK 485 (576)
Q Consensus 484 ~k 485 (576)
.+
T Consensus 365 ~~ 366 (384)
T PRK12418 365 DA 366 (384)
T ss_pred Cc
Confidence 54
No 52
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=1.5e-46 Score=384.49 Aligned_cols=345 Identities=15% Similarity=0.165 Sum_probs=246.7
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 89 (576)
+.-++|||. |||++++||||+|++|.+|+++||+++.| ++|.||+|+||||+||+.+|+++|++|++++++|.
T Consensus 35 ~~v~~YvCG--pTvY~~~HIGhart~V~~Dvl~R~lr~~G-----~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~ 107 (411)
T TIGR03447 35 PEAGMYVCG--ITPYDATHLGHAATYLTFDLVNRVWRDAG-----HRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQI 107 (411)
T ss_pred CcceEEEeC--CccCCCcccccchHHHHHHHHHHHHHhcC-----CceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHH
Confidence 344677777 66669999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCcc-ccccccCCChhhHHHHHHHHHHHHhcCCcEEecce----eeeecCCCCccccccceeccCCCCCCC
Q psy2393 90 SNRKKYLDGFYIK-FDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKI----NQFFDPIKNIFLPDRYIKGECPICNAK 164 (576)
Q Consensus 90 ~~~~~~l~~lgi~-~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~----~~~~~~~~~~~l~~~~v~~~~p~c~~~ 164 (576)
+.|.+++++|||. +|.++++++ +.+.+++++++|. ++|++|+..+ .+||+...-.
T Consensus 108 ~~f~~d~~~Lni~~~d~~~RaTe--~i~~ii~~i~~L~-~kG~aY~~~~~~~~~VYFdv~~~~----------------- 167 (411)
T TIGR03447 108 DLFREDMEALRVLPPRDYIGAVE--SIDEVIEMVEKLL-AAGAAYEVEGPEYPDVYFSIEATE----------------- 167 (411)
T ss_pred HHHHHHHHHcCCCCCCcccCCCC--CHHHHHHHHHHHH-HCCCEEecCCCCcCcEEEeccchh-----------------
Confidence 9999999999984 899999884 5899999999999 9999999887 6999765421
Q ss_pred CCCCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCC
Q psy2393 165 DQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKF 244 (576)
Q Consensus 165 ~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (576)
.||..+ ++ +.+++......++..+....+.+.--|.| |.+. ..+-
T Consensus 168 -~YG~Ls---~~--~~~~~~~~~~~~~~~~~~~~K~~p~DFaL------------------WK~~-----------~~~e 212 (411)
T TIGR03447 168 -QFGYES---GY--DRATMLELFAERGGDPDRPGKRDPLDALL------------------WRAA-----------REGE 212 (411)
T ss_pred -cccccc---CC--CHHHHHhhhcccccCcccccCCCCcccce------------------eCCC-----------CCCC
Confidence 233221 00 00000000000000000000000111111 1000 0011
Q ss_pred CCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchh
Q psy2393 245 NDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFH 324 (576)
Q Consensus 245 ~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh 324 (576)
++... .||...|+ | ++.+.....+..| ..++ +|.+|.|++|+|
T Consensus 213 ----~~w~s-pwG~GRPG--------W------HiECsam~~~~lg--------~~~D----------ih~GG~DLifpH 255 (411)
T TIGR03447 213 ----PSWDS-PFGPGRPG--------W------HIECSAIATNRLG--------AGFD----------IQGGGSDLIFPH 255 (411)
T ss_pred ----CCccC-CCCCCCCh--------h------HHHHHHHHHHHcC--------Ccee----------cccCcccccccc
Confidence 12333 57766664 2 3333222222233 2333 999999999999
Q ss_pred HhHHHHHHHhc-CC-CCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHh
Q psy2393 325 ILFWPAILKFS-GR-KLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFI 402 (576)
Q Consensus 325 ~~~~~a~l~~~-~~-~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~ 402 (576)
+.+..|+..++ |. +.++.|+|+|||..+|+|||||+||+|+++++++.|++++++|||+++. +++.+++||.+.+.
T Consensus 256 heneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~--~Yr~pl~fs~e~l~ 333 (411)
T TIGR03447 256 HEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAG--HYRQDRDWTDAVLA 333 (411)
T ss_pred hHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecC--CCCCCCccCHHHHH
Confidence 99999988875 54 5668999999999999999999999999999998789999999999976 89999999999876
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHH
Q psy2393 403 SCVNSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQTNFINI 479 (576)
Q Consensus 403 ~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~~~~~n~ 479 (576)
+. ...+.++.+++.++. . . .+..+...+.+|+ ++++++.|+..|+++++..|.
T Consensus 334 ~a--~~~l~rl~~~~~~~~-----------------~-~----~~~~~~~~~~~al~dDln~p~a~~~l~~~~~~~n~ 387 (411)
T TIGR03447 334 EA--EARLARWRAALAATD-----------------A-P----DATDLIARLRQHLANDLDTPAALAAVDNWAAAALS 387 (411)
T ss_pred HH--HHHHHHHHHHHhhcc-----------------c-c----hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 65 334556666553220 0 1 1123445666788 689999999999999986665
No 53
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-45 Score=373.74 Aligned_cols=349 Identities=21% Similarity=0.282 Sum_probs=256.4
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
-++|||. |||++..||||+|++|..|++.||++.+| |.|.||.+++|.++||+.+|.+.|.++.+++++|.++
T Consensus 23 V~mYvCG--pTVYd~~HIGhaRt~V~fDvl~R~L~~~G-----y~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~ 95 (464)
T COG0215 23 VKMYVCG--PTVYDYAHIGHARTYVVFDVLRRYLRYLG-----YKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAA 95 (464)
T ss_pred EEEEecC--CccCCccccccCcceehHHHHHHHHHHhC-----CeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3556665 99999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhhcCc-cccccccCCChhhHHHHHHHHHHHHhcCCcEEec-ceeeeecCCCCccccccceeccCCCCCCCCCCCC
Q psy2393 92 RKKYLDGFYI-KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINK-KINQFFDPIKNIFLPDRYIKGECPICNAKDQYGD 169 (576)
Q Consensus 92 ~~~~l~~lgi-~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~-~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~ 169 (576)
|.++++.||| .+|...+.+ +|...+.+++++|. ++|++|.. .+.|+|+..+-. .||.
T Consensus 96 f~~D~~aL~v~~p~~~PraT--e~I~~iI~~I~~Li-ekG~AY~~~~G~VYFdv~~f~------------------~YG~ 154 (464)
T COG0215 96 FFEDMDALNVLPPDIEPRAT--EHIDEIIEFIEKLI-EKGYAYVADDGDVYFDVSKFK------------------DYGK 154 (464)
T ss_pred HHHHHHHhCCCCCcccCcHh--hCHHHHHHHHHHHH-HCCceEEecCCcEEEecccch------------------hhHh
Confidence 9999999999 578888877 79999999999999 99999998 578999766531 1322
Q ss_pred ccccCCCcCCCCccCCCcccCCCCccEEe--eecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCc
Q psy2393 170 FCECCSSIYTPTKLINPYSILSGTKPIIK--SSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDW 247 (576)
Q Consensus 170 ~c~~cg~~~~~~~l~~p~~~~~~~~~~~~--~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw 247 (576)
..- + -..+++ +.|..+... +.+.--|-| | -....|.+-|
T Consensus 155 LS~---~-~~le~l------~~gar~~~~~~Krnp~DFvL-----------W------------------K~sk~gEp~W 195 (464)
T COG0215 155 LSG---R-DSLEEL------QAGARVEVDEEKRNPLDFVL-----------W------------------KAAKPGEPSW 195 (464)
T ss_pred hcC---C-CChhHH------hhccccccccccCCchhhee-----------e------------------ccCCCCCCCC
Confidence 110 0 000000 001111100 000001111 1 0000122223
Q ss_pred ccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhH
Q psy2393 248 DISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILF 327 (576)
Q Consensus 248 ~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~ 327 (576)
++ .||...|+ | ++-+..-.....| +.++ ||.+|.|++|+||.+
T Consensus 196 ----~S-PWG~GRPG--------W------HIECSaM~~~~LG--------~~~D----------IHgGG~DLiFPHHEN 238 (464)
T COG0215 196 ----DS-PWGKGRPG--------W------HIECSAMSTKYLG--------ETFD----------IHGGGSDLIFPHHEN 238 (464)
T ss_pred ----CC-CCCCCCCc--------h------hHHHHHHHHHHhC--------CCcc----------eecCcccccCCCccc
Confidence 33 56666664 2 3322222222233 3444 999999999999999
Q ss_pred HHHHHHhcCC--CCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhh
Q psy2393 328 WPAILKFSGR--KLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCV 405 (576)
Q Consensus 328 ~~a~l~~~~~--~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~ 405 (576)
..|+.++... +..++|+|+|||+++|+|||||+||+++++|++++ |++.+|||+++++ +++.+++||.+.+.+..
T Consensus 239 EiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~-~~p~~lR~~lls~--HYR~pl~fsee~L~~A~ 315 (464)
T COG0215 239 EIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKK-YDPEVLRLFLLSS--HYRSPLDFSEELLEEAK 315 (464)
T ss_pred HHHHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhh-cCHHHHHHHHHHH--HhCCccccCHHHHHHHH
Confidence 9999988744 34589999999999999999999999999999999 9999999999998 99999999999877664
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhhhhc
Q psy2393 406 NSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQTNFINIFFDQN 484 (576)
Q Consensus 406 ~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~~~~~n~y~~~~ 484 (576)
..+.++.+++.++.... +.. . . ..+..+.+.+.++| ++|++..|+..|.++++..|...+..
T Consensus 316 --~~l~rl~~~~~~~~~~~-----~~~------~-~---~~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~~~~~~~~~ 378 (464)
T COG0215 316 --KALERLYNALRRLRDLA-----GDA------E-L---ADLKEFEARFREALDDDFNTPKALAVLFELAKEINRLLEEG 378 (464)
T ss_pred --HHHHHHHHHHHHHHhhc-----ccc------c-c---chhHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhhhhcc
Confidence 34777777776543111 000 0 0 03445556688888 79999999999999998777655443
No 54
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.7e-45 Score=388.79 Aligned_cols=346 Identities=15% Similarity=0.172 Sum_probs=251.7
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
.++-++.+.|||++.+||||+|++|.+|+++||++++| ++|.||+|+||||+||+.+|++.|+++.+++++|.+.
T Consensus 247 ~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~G-----y~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~ 321 (699)
T PRK14535 247 ENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECG-----YPLTYVRNITDIDDKIIARAAENGETIGELTARFIQA 321 (699)
T ss_pred CceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcC-----CceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33444444599999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEec-ceeeeecCCCCccccccceeccCCCCCCCCCCCCc
Q psy2393 92 RKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINK-KINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDF 170 (576)
Q Consensus 92 ~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~-~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~ 170 (576)
|.+++++|||.++.++ |...+|...++.++++|. ++|++|++ .+.+|||..+-. .||..
T Consensus 322 F~~d~~~LnI~~p~~~-praTeHI~~ii~lI~~Li-dkG~AYe~~~gsVYFdV~~f~------------------~YG~L 381 (699)
T PRK14535 322 MHEDADALGVLRPDIE-PKATENIPQMIAMIETLI-QNGKAYPAANGDVYYAVREFA------------------AYGQL 381 (699)
T ss_pred HHHHHHHcCCCCCcEe-eCccchHHHHHHHHHHHH-HCCCEEEeCCCCEEEeccccc------------------ccccc
Confidence 9999999999887764 445599999999999999 99999987 568999877531 24422
Q ss_pred cccCCCcCCCCccCCCcccCCCCccEEe--eecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcc
Q psy2393 171 CECCSSIYTPTKLINPYSILSGTKPIIK--SSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWD 248 (576)
Q Consensus 171 c~~cg~~~~~~~l~~p~~~~~~~~~~~~--~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~ 248 (576)
+- . +.+++ +.|..++.. ....--|.| | .+. ..|-.-|
T Consensus 382 S~---~--~~~~l------~~g~rve~d~~Krnp~DFaL-----------W-------K~s-----------k~Gep~W- 420 (699)
T PRK14535 382 SG---K--SLDDL------RAGERVEVDGFKRDPLDFVL-----------W-------KAA-----------KAGEPAW- 420 (699)
T ss_pred cC---C--ChHHh------cCCCccccccccCCccccce-----------e-------ccC-----------CCCCCCc-
Confidence 21 0 01111 112222110 111111112 1 100 0121223
Q ss_pred cccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHH
Q psy2393 249 ISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFW 328 (576)
Q Consensus 249 isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~ 328 (576)
.. .||-..|+ | ++.+.....+..| ..++ ||.+|.|++|+||.+.
T Consensus 421 ---~S-PWG~GRPG--------W------HIECSAMs~~~LG--------~~~D----------IHgGG~DLiFPHHENE 464 (699)
T PRK14535 421 ---ES-PWGNGRPG--------W------HIECSAMSENLFG--------DTFD----------IHGGGADLQFPHHENE 464 (699)
T ss_pred ---cC-CCCCCCCc--------h------HHHHHHHHHHHcC--------Ccce----------eECCccccCCCCCccH
Confidence 33 56666664 2 3333222222233 2333 9999999999999999
Q ss_pred HHHHHhc-CCC----------------CCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCC
Q psy2393 329 PAILKFS-GRK----------------LPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKI 391 (576)
Q Consensus 329 ~a~l~~~-~~~----------------~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~ 391 (576)
.|+.+++ |.. ..++|+|+|||+++|+|||||+||+++++++++. ||+|++|||+++. +++
T Consensus 465 iAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~-ygpdalRl~lLss--hYR 541 (699)
T PRK14535 465 IAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQ-YDPEVVRFFILRA--HYR 541 (699)
T ss_pred HHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHh-CCHHHHHHHHHcC--CCC
Confidence 9998774 431 3379999999999999999999999999999999 9999999999986 788
Q ss_pred CCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHH
Q psy2393 392 EDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIV 470 (576)
Q Consensus 392 ~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l 470 (576)
.+++||.+.+.+.. ..+.++.+++.++.. .. ..+...+..+.+.+.+|| ++++++.|+..|
T Consensus 542 spL~fS~e~Le~Ak--~~l~Rl~~~l~~~~~---------~~-------~~~~~~l~~~~~~f~~AL~DDlntp~Ala~L 603 (699)
T PRK14535 542 SPLNYSDAHLDDAK--GALTRLYTTLKNTPA---------AE-------FMLSENVNDYTRRFYAAMNDDFGTVEAVAVL 603 (699)
T ss_pred CCCCcCHHHHHHHH--HHHHHHHHHHHhhhh---------cc-------chhhhhHHHHHHHHHHHHhhccChHHHHHHH
Confidence 99999999776653 235555555433210 00 001123445667888899 689999999999
Q ss_pred HHHHHHHHHh
Q psy2393 471 IEQTNFINIF 480 (576)
Q Consensus 471 ~~~~~~~n~y 480 (576)
+++++..|..
T Consensus 604 ~~lvk~iN~~ 613 (699)
T PRK14535 604 FELAGEVNKT 613 (699)
T ss_pred HHHHHHHHHH
Confidence 9999988875
No 55
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=100.00 E-value=4.9e-42 Score=333.50 Aligned_cols=277 Identities=21% Similarity=0.286 Sum_probs=193.0
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 92 (576)
++|+|. |||+..+||||+|++|..|++.|+++..| ++|.+|.|++|.+++|+.+|++.|+++.+++++|.++|
T Consensus 10 ~~Y~CG--PTVYd~~HiGhaR~~v~~D~l~R~L~~~g-----~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f 82 (300)
T PF01406_consen 10 RMYVCG--PTVYDYAHIGHARTYVFFDVLRRYLEYLG-----YDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEF 82 (300)
T ss_dssp EEEEEE--EBTTS--BHHHHHHHHHHHHHHHHHHHTT------EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred EEEcCC--CCCCCCCCCcceeeeeeHHHHHHHHHHcC-----CeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHH
Confidence 455555 99999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhhcCccc-cccccCCChhhHHHHHHHHHHHHhcCCcEEecc-eeeeecCCCCccccccceeccCCCCCCCCCCCCc
Q psy2393 93 KKYLDGFYIKF-DNWYSTDSIENIDLVQKIYDTLYNKAKLIINKK-INQFFDPIKNIFLPDRYIKGECPICNAKDQYGDF 170 (576)
Q Consensus 93 ~~~l~~lgi~~-d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~-~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~ 170 (576)
.++|++|||.. +.+.+.+ ++...+.+++++|. ++|++|... +.+||+...-. .||..
T Consensus 83 ~~dm~~Lnv~~p~~~prat--e~i~~ii~~i~~Li-~~G~AY~~~~g~VYFdv~~~~------------------~YG~L 141 (300)
T PF01406_consen 83 FEDMKALNVLPPDHYPRAT--EHIPEIIELIEKLI-DKGHAYESEDGSVYFDVSKFP------------------DYGKL 141 (300)
T ss_dssp HHHHHHTT----SEEEEGG--GGHHHHHHHHHHHH-HTTSEEEETTSEEEE-CCGST------------------TTTTT
T ss_pred HHHHHHcCCCCCccccchh--ccHHHHHHHHHHHH-HCCCeEEcCCCcEEEeecccc------------------ccccc
Confidence 99999999954 7787766 79999999999999 999999999 99999865421 23322
Q ss_pred cccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcc--
Q psy2393 171 CECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWD-- 248 (576)
Q Consensus 171 c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~-- 248 (576)
+. . ++ ++.......- .+.. + .+..|+.
T Consensus 142 s~--------------------~------------~~--~~l~~~~~~~-~~~~--------------K--~~p~DFaLW 170 (300)
T PF01406_consen 142 SN--------------------Q------------DL--EDLEAGARVE-VDYE--------------K--RNPRDFALW 170 (300)
T ss_dssp TT---------------------------------SH--HHHHHCHHHT-T-TT--------------S--SSTT-EEEE
T ss_pred cc--------------------c------------ch--hhHHhhhhcc-cccc--------------c--CCCcceeee
Confidence 11 0 11 1111100000 0000 0 0111111
Q ss_pred -------cccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCc
Q psy2393 249 -------ISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIF 321 (576)
Q Consensus 249 -------isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~ 321 (576)
++... .||...|+ | ++.+.....+..| ..++ ||.+|.|++
T Consensus 171 K~~~~~e~~w~s-pwG~GRPG--------W------HiECsam~~~~lG--------~~~D----------IH~GG~DL~ 217 (300)
T PF01406_consen 171 KAAKPGEPSWDS-PWGKGRPG--------W------HIECSAMSMKYLG--------DTFD----------IHGGGIDLI 217 (300)
T ss_dssp EE--TTS--B---TTSSEEE---------H------HHHHHHHHHHHHT--------TSEE----------EEEEEGGGT
T ss_pred ecccccCCcccC-CCccCcCc--------e------eeehHHHHHHHcC--------CCce----------EEccccccC
Confidence 22333 57766664 3 4433222222223 2333 999999999
Q ss_pred chhHhHHHHHHHhc-CCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhh
Q psy2393 322 YFHILFWPAILKFS-GRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQS 400 (576)
Q Consensus 322 ~fh~~~~~a~l~~~-~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~ 400 (576)
|+|+.+..|+.+++ |.+..++|+|.|||.++|+|||||+||+++++|++++ |+++++||+++++ +++.+++||++.
T Consensus 218 FPHHENEiAqs~a~~g~~~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll~~-~~~~~lR~~~l~~--hYr~~l~~s~~~ 294 (300)
T PF01406_consen 218 FPHHENEIAQSEAATGKPFANYWMHNGHLNVDGEKMSKSLGNFITIRDLLKK-YSPDALRLFLLST--HYRKPLNFSEEN 294 (300)
T ss_dssp TTHHHHHHHHHHHHHSS-SEEEEEEE--EEETTCE--TTTT---BHHHHHTT-S-HHHHHHHHHTS---TTS-EEE-HHH
T ss_pred CCCccchHHHHHHhhCchHHHHHHHHHHHhhcCccccccCCCEEEHHHHhhc-CCHHHHHHHHhcC--CCCCccccCHHH
Confidence 99999999998886 6555689999999999999999999999999999999 9999999999998 899999999997
Q ss_pred Hhhh
Q psy2393 401 FISC 404 (576)
Q Consensus 401 ~~~~ 404 (576)
+.+.
T Consensus 295 l~~A 298 (300)
T PF01406_consen 295 LEEA 298 (300)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
No 56
>KOG2007|consensus
Probab=100.00 E-value=2.1e-40 Score=331.49 Aligned_cols=389 Identities=17% Similarity=0.162 Sum_probs=269.7
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHh-hcCCCCCCcceEEecCCCcccHHHHHHHH--HcCCCHHHHHH--
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQC-MQQDNGKSRQVYFICADDAHGAAIMIAAE--KAGMTPKEFIN-- 86 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~-~~G~~~~~~~V~~v~g~D~~G~~i~~~a~--~~g~~~~~~~~-- 86 (576)
.++-.+.+.||++...||||||+||..||+.|+++ +.| |+|.||+|++|.+++|+.+|. +.+..|..+.+
T Consensus 54 ~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfg-----y~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F 128 (586)
T KOG2007|consen 54 NKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFG-----YDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERF 128 (586)
T ss_pred CeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcC-----cceEEEecccchhHHHHHHhhhhhhccchhhHHHHH
Confidence 34444455599999999999999999999999999 999 999999999999999999997 34555544433
Q ss_pred -HHHHHHHHHHhhcCc-cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCC
Q psy2393 87 -NISSNRKKYLDGFYI-KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAK 164 (576)
Q Consensus 87 -~~~~~~~~~l~~lgi-~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~ 164 (576)
.|.++|.++|.+|+| .++...+.+ +|...+..+++++. ++|+.|..++.||||...-.
T Consensus 129 ~~~e~eF~~DM~~LnvLpPtv~tRVS--eyvp~II~fIqkII-dnG~aY~~dGsVYFdv~kf~----------------- 188 (586)
T KOG2007|consen 129 CYYEEEFLQDMAALNVLPPTVQTRVS--EYVPQIIKFIQKII-DNGYAYAVDGSVYFDVDKFP----------------- 188 (586)
T ss_pred HHHHHHHHHHHHHhCCCCCcccchhh--hchHHHHHHHHHHH-hCCceeeeCCcEEEeccccc-----------------
Confidence 577999999999999 667777766 79999999999999 99999999999999865432
Q ss_pred CCCCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCC
Q psy2393 165 DQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKF 244 (576)
Q Consensus 165 ~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (576)
..||-.. |.. +.+.++- |.....+... .+.+.-|-....|-
T Consensus 189 ~~YgKL~---G~~---~~~~~gE----g~l~ds~KR~-----------------------------p~DFALWKAsK~gE 229 (586)
T KOG2007|consen 189 HSYGKLV---GQR---KNLQEGE----GVLSDSRKRS-----------------------------PADFALWKASKPGE 229 (586)
T ss_pred chhhhhc---Cch---hhcccCc----CccccccCCC-----------------------------hhhhhhhhhcCCCC
Confidence 0111100 100 0000000 0000000000 01111121111233
Q ss_pred CCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchh
Q psy2393 245 NDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFH 324 (576)
Q Consensus 245 ~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh 324 (576)
+-|. . .||...|+ ..|- ++.++.. + .| ..++ ||-+|.|+.|+|
T Consensus 230 P~We----S-PWG~GRPG---WHIE------CSaMas~--~---lG--------~~lD----------IH~GG~DL~FPH 272 (586)
T KOG2007|consen 230 PSWE----S-PWGKGRPG---WHIE------CSAMASA--I---LG--------SQLD----------IHGGGIDLAFPH 272 (586)
T ss_pred CCCC----C-CCCCCCCC---ceee------eHHHHHH--h---hc--------cccc----------eecCcccccCCC
Confidence 3332 2 46655553 1110 1122221 1 12 2333 999999999999
Q ss_pred HhHHHHHHHhcCCC--CCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHh
Q psy2393 325 ILFWPAILKFSGRK--LPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFI 402 (576)
Q Consensus 325 ~~~~~a~l~~~~~~--~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~ 402 (576)
|.+..|..++.-.. .-++++|+|||.++|+|||||++|+||+++++++ |+|++||+++++. .++..++|+...+.
T Consensus 273 HeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk~-~sp~qLRl~fl~~--~wr~~ldYs~s~m~ 349 (586)
T KOG2007|consen 273 HENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKK-YSPRQLRLAFLLH--QWRSPLDYSDSTME 349 (586)
T ss_pred cccHHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHHh-cCHHHHHHHHHHH--HhcCcCCchHHHHH
Confidence 99999988876433 3389999999999999999999999999999999 9999999999998 88899999988665
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhh
Q psy2393 403 SCVNSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQTNFINIFF 481 (576)
Q Consensus 403 ~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~~~~~n~y~ 481 (576)
.. ..+...+.|++.-+..+.+ ...+ .+.+.+.+.+|...+......|+.|+ +++++..++..+.+++..+|.|+
T Consensus 350 ~a--~q~e~~~~~ff~~~~al~~-~~~~--~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs~~N~~i 424 (586)
T KOG2007|consen 350 QA--LQLEKSLNNFFLDVKALLR-GAKP--FEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVSQGNAYI 424 (586)
T ss_pred HH--HHHHHHHHHHHHHHHHHHh-ccch--hhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHHhhhhHHH
Confidence 44 3455566666533333322 1111 22343322889999999999999998 89999999999999999999999
Q ss_pred hhcCccccccCcccHHHHHHHHHHHHHHHHHHHH
Q psy2393 482 DQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTI 515 (576)
Q Consensus 482 ~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ 515 (576)
...... .....+.++...+..++++++.
T Consensus 425 ~~~~~~------~~~~~L~~I~~yIt~~l~ifG~ 452 (586)
T KOG2007|consen 425 RESGER------PNSALLKAIASYITKLLKIFGL 452 (586)
T ss_pred HHhccc------cchHHHHHHHHHHHHHHHHhCC
Confidence 876611 1123345555556666666654
No 57
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.9e-40 Score=357.76 Aligned_cols=335 Identities=16% Similarity=0.206 Sum_probs=257.1
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 89 (576)
.+++++|..++|||||++||||+|+++++|+++|++++.| ++|.++.|+||+|+++...+...+..++++++.+.
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G-----~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~ 183 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAG-----YDVTREYYVNDAGTQIGMLIASLELLWRKAVDISL 183 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcC-----CcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999 99999999999999999999998888999999999
Q ss_pred HHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEE-ecceeeeecCCCCccccccceeccCCCCCCCCCCC
Q psy2393 90 SNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLII-NKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYG 168 (576)
Q Consensus 90 ~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy-~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g 168 (576)
+.|+++|++|||.+|.++++++..+...+++++++|. ++|++| +.++.+|++..
T Consensus 184 ~~~~~~l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~-~~G~~y~~~~Ga~~~~~~------------------------ 238 (507)
T PRK01611 184 DEIKEDLDRLGVHFDVWFSESELYYNGKVDEVVEDLK-EKGLLYVESDGALWVRLT------------------------ 238 (507)
T ss_pred HHHHHHHHHcCCeeeEEeecCcchhcchHHHHHHHHH-HCCCEEEeeCCcEEEEch------------------------
Confidence 9999999999999999988887777889999999999 999999 77666665311
Q ss_pred CccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcc
Q psy2393 169 DFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWD 248 (576)
Q Consensus 169 ~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~ 248 (576)
.+ +...|..
T Consensus 239 ------------------------------------------~~-----------------------------~~~~~~v 247 (507)
T PRK01611 239 ------------------------------------------EF-----------------------------GDDKDRV 247 (507)
T ss_pred ------------------------------------------hh-----------------------------CCCCCeE
Confidence 00 0001222
Q ss_pred cccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHH
Q psy2393 249 ISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFW 328 (576)
Q Consensus 249 isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~ 328 (576)
+-|+. |.+ +|.- ..++|. .. .+.. ..++|++.|.||......++
T Consensus 248 l~ksd---G~~--------~Y~t--~Dia~~------~~------------k~~~-----~d~~i~V~g~~q~~hf~~~~ 291 (507)
T PRK01611 248 LIKSD---GTY--------TYFT--RDIAYH------LY------------KFER-----FDRVIYVVGADHHGHFKRLK 291 (507)
T ss_pred EEECC---CCc--------cchH--HHHHHH------HH------------HHhh-----cCEEEEEECCChHHHHHHHH
Confidence 22322 221 1100 001111 00 0010 12458899999973333333
Q ss_pred HHHHHhcCCCCCc-EEeee---ccEEe-CCccccccCCCccChhHHhhcCCCh----------------hHHHHHHHhhC
Q psy2393 329 PAILKFSGRKLPN-NIFVH---GFMTI-NGKKMSKSNKIGISPLYYLKIGMNP----------------EWLRYYIASKL 387 (576)
Q Consensus 329 ~a~l~~~~~~~p~-~~~~~---g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~----------------d~lR~~l~~~~ 387 (576)
+.+..+|...+. .++.| |+|.. +|+|||||+||+|+++|++++++|. |++||++++.
T Consensus 292 -~~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR~~~L~~- 369 (507)
T PRK01611 292 -AALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLSR- 369 (507)
T ss_pred -HHHHHcCCCcccceEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhccceeEehhhhc-
Confidence 467888876443 43444 77777 7889999999999999999987888 9999999987
Q ss_pred CCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCC---Ccc-cCChHHHHHHHHHHHHHHHHHHHhhhH
Q psy2393 388 NNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLN---MKW-VKDNDTFLSKLRVVSSSIQKYYENRNF 463 (576)
Q Consensus 388 ~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~---~~~-~~d~~~l~~~l~~~~~~v~~a~~~~~~ 463 (576)
....+++|+++.+.+..... ..++++++.|+++++++....... ..+ .+.+.||+..|..+++.+.++++++++
T Consensus 370 -~~~~~~~Fd~~~~~~~~~~~-~~yvqYa~aR~~sil~k~~~~~~~~~~~~l~~~~e~~Ll~~L~~~~~~v~~a~~~~~p 447 (507)
T PRK01611 370 -SRDKDLDFDLDLALSFEGNN-PPYVQYAHARICSILRKAAEAGIDLLLALLTEEEEKELIKKLAEFPEVVESAAEELEP 447 (507)
T ss_pred -CCCCCCccCHHHHHhhcCCC-cHHHHHHHHHHHHHHHhhhccCccccccccCCHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 34578999999987765333 348899999999999875321111 112 122389999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcC
Q psy2393 464 NKVLYIVIEQTNFINIFFDQNK 485 (576)
Q Consensus 464 ~~~~~~l~~~~~~~n~y~~~~k 485 (576)
+.+++++++|++.+|.||+.++
T Consensus 448 ~~l~~yl~~la~~f~~fY~~~~ 469 (507)
T PRK01611 448 HRIANYLYELAGAFHSFYNRVL 469 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999998765
No 58
>KOG0437|consensus
Probab=100.00 E-value=3.3e-37 Score=319.09 Aligned_cols=489 Identities=21% Similarity=0.330 Sum_probs=337.6
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc-------CC--
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA-------GM-- 79 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~-------g~-- 79 (576)
+++++|+++.|.||.||.||+||+.+..-.|+.+-|.|++| ++|+|.+|+.|.|+||...|+++ |.
T Consensus 41 ~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~G-----k~vLfPfgFHCTGMPI~A~AdKLkrEie~fG~pp 115 (1080)
T KOG0437|consen 41 KSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQG-----KNVLFPFGFHCTGMPIKASADKLKREIELFGCPP 115 (1080)
T ss_pred cccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcC-----ceEEeecccccCCCccHHhHHHHHHHHHHhCCCC
Confidence 46789999999999999999999999999999999999999 99999999999999999888752 11
Q ss_pred ------------------------------------------------------------CHHHHHHHHHHHHHHHHhhc
Q psy2393 80 ------------------------------------------------------------TPKEFINNISSNRKKYLDGF 99 (576)
Q Consensus 80 ------------------------------------------------------------~~~~~~~~~~~~~~~~l~~l 99 (576)
+|..|...+...-.++|+++
T Consensus 116 df~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~F~d~~~WL~yFPpLc~~dlk~~ 195 (1080)
T KOG0437|consen 116 DFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKKFADPKHWLYYFPPLCERDLKRF 195 (1080)
T ss_pred CCchhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhhcccChhHHHHhCChHHHHHHHHh
Confidence 12234445555667889998
Q ss_pred Ccccc---ccccCC-ChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCcccccccee---c----------------
Q psy2393 100 YIKFD---NWYSTD-SIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIK---G---------------- 156 (576)
Q Consensus 100 gi~~d---~~~~t~-~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~---~---------------- 156 (576)
|...| .|+.|+ +|.|..+|+|-|.+|. +.|.|..++.-.-|||.++....|+.-. |
T Consensus 196 gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~-~~gkI~fgkRyTIyspkDgQpCmDHDR~sGEgV~PqeytliKle~le~ 274 (1080)
T KOG0437|consen 196 GLGIDWRRSFITTDVNPYYDSFVRWQFNKLK-EAGKIKFGKRYTIYSPKDGQPCMDHDRASGEGVGPQEYTLIKLEVLEP 274 (1080)
T ss_pred CCCcceeeeeeecccchhHHHHHHHHHHHHH-hcCCcccCcceeeecCCCCCcccccccccCCCCCcceEEEEEEEeccc
Confidence 87544 566664 7889999999999999 9999999999999999999888776321 0
Q ss_pred ----------------------------c-C---C--------CCCCC--------------------------------
Q psy2393 157 ----------------------------E-C---P--------ICNAK-------------------------------- 164 (576)
Q Consensus 157 ----------------------------~-~---p--------~c~~~-------------------------------- 164 (576)
+ | | .|...
T Consensus 275 ~p~~l~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi~t~raa~NmsyQ~~tk~~g~~~~~~~i~ 354 (1080)
T KOG0437|consen 275 FPKALSSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFIATERAARNMSYQKLTKERGVVSCLVTIT 354 (1080)
T ss_pred chhhccccccceeeeeehhcCCccccCccceEEcCCccEEeEEecCCceEEEeehHHHhhcchhhccccCCcccceeeec
Confidence 0 1 1 01000
Q ss_pred --------------------------------------------C---------------------------------CC
Q psy2393 165 --------------------------------------------D---------------------------------QY 167 (576)
Q Consensus 165 --------------------------------------------~---------------------------------~~ 167 (576)
| .+
T Consensus 355 G~~~iGa~l~aPlsv~~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~kK~~lYg~~~ew~~~E~vPii~~~~f 434 (1080)
T KOG0437|consen 355 GYDLIGAPLSAPLSVYERVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLKKKPELYGLKPEWVLFEIVPIIRIPGF 434 (1080)
T ss_pred chhhcCCcccCcchhhheeeeccceeeeccCCceeEEeCCCCCchhhhHHHhhhhcccccCCChhhccccccceeecccc
Confidence 0 01
Q ss_pred CCccc--cCCCc-----------------------CCCC--------------------ccC------------CCcccC
Q psy2393 168 GDFCE--CCSSI-----------------------YTPT--------------------KLI------------NPYSIL 190 (576)
Q Consensus 168 g~~c~--~cg~~-----------------------~~~~--------------------~l~------------~p~~~~ 190 (576)
|+.|. .|... ++.. +|+ .++-.|
T Consensus 435 Gdl~ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~mlig~y~G~KVe~~K~~i~~~li~~g~a~~y~EPEkqVmSR 514 (1080)
T KOG0437|consen 435 GDLAAEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTMLIGKYKGEKVEDAKPKIKTDLIETGDALKYNEPEKQVMSR 514 (1080)
T ss_pred chhhHHHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceEEEeccccccHHhhhhHHHHHHHhcccceeecCcchhhhcc
Confidence 21110 00000 0000 011 147789
Q ss_pred CCCccEEeeecceeEecCchhhHHHHHHhhhcCC-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEE
Q psy2393 191 SGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFY 269 (576)
Q Consensus 191 ~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~ 269 (576)
+|..+++...+|||++.+.+.|+....+. ++.. .+.++.++-+..-|. .+..|..||+- .-|+.+|.++...+.
T Consensus 515 SGdeCiVAL~DQWYldYgE~eWKk~a~~c-Le~l~~f~dEtR~~fE~tLd---WL~~wacsRsy-GLGTrlPWD~qyLvE 589 (1080)
T KOG0437|consen 515 SGDECIVALCDQWYLDYGEAEWKKQAKEC-LENLNTFSDETRNGFEDTLD---WLGQWACSRSY-GLGTRLPWDEQYLVE 589 (1080)
T ss_pred CCCceEEEeccchhhhcCcHHHHHHHHHH-HhhhhccCHHHHHHHHHHHH---HHHhhhhhccc-cCCCCCCCcHHHHHH
Confidence 99999999999999999888899999999 6664 678888876655554 55689999997 899999987544333
Q ss_pred EEeeccc--chhhhcch-----hhhhCC---CC---------------Ccccc------------cccccccccCCCcce
Q psy2393 270 VWLDAPI--GYLASLKN-----FFEKGG---PK---------------KKYNE------------LRNFDEFISSPNTEQ 312 (576)
Q Consensus 270 vw~d~~~--~~~~~~~~-----~~~~~g---~~---------------~~~~~------------~~~~~~~w~~~~~~~ 312 (576)
..-|+.+ +|.+...- +-+..| .. ..|+. ..+|+.|+|-+
T Consensus 590 SLSDSTIYmAyYTvaHll~~d~~g~~~~plgi~~~QMtdeVwdYvF~~~~~~k~t~i~~e~L~~lr~eF~Y~YPiD---- 665 (1080)
T KOG0437|consen 590 SLSDSTIYMAYYTVAHLLHRDLYGKVEGPLGIKPDQMTDEVWDYVFLNEPYPKNTAIPEEALSNLRREFEYFYPID---- 665 (1080)
T ss_pred hcchhHHHHHHHHHHHHHHHhhccCCcccCCCChhhcCHHHHHHhhccCCCCcCCCccHHHHHHHHHhhhccccee----
Confidence 3333321 11110000 000011 10 00110 03555555543
Q ss_pred EEEeeecCcchhHhHH----HHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCC
Q psy2393 313 YHFIGKDIFYFHILFW----PAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLN 388 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~----~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~ 388 (576)
+.+.|+|++..|..++ +|++- ....|+.+-++||+++|++|||||.||+.|+++.+++ +|+|+.|+.|+.. +
T Consensus 666 lrvsGKDLi~NHLtfflynHvAl~~--~k~WPkgiraNGHLmLNsEKMSKSTGNfmTL~qaieK-Fgad~tRlalAda-G 741 (1080)
T KOG0437|consen 666 LRVSGKDLIPNHLTFFLYNHVALFP--EKKWPKGIRANGHLMLNSEKMSKSTGNFMTLEQAIEK-FGADGTRLALADA-G 741 (1080)
T ss_pred eeeccccccccceeEeeeehhhhcc--cccCccceeeCceEEecchhhccccCCeeeHHHHHHH-hCccceeeeeecc-c
Confidence 8899999988775443 22222 3467899999999999999999999999999999999 9999999999986 5
Q ss_pred CCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCC-cc--cCChHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy2393 389 NKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNM-KW--VKDNDTFLSKLRVVSSSIQKYYENRNFNK 465 (576)
Q Consensus 389 ~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~-~~--~~d~~~l~~~l~~~~~~v~~a~~~~~~~~ 465 (576)
++..|.+|....... .+-++.+.+.-+..++...- .+.. .. -.| +-+.+.++.+++...++++...|..
T Consensus 742 D~veDANF~ea~AnA-----aILRLyt~~ew~eEm~~~~s--~LrtGp~~~FaD-rvf~nemN~~i~~t~~aye~~~fk~ 813 (1080)
T KOG0437|consen 742 DGVEDANFVEANANA-----AILRLYTYVEWIEEMCENRS--SLRTGPASTFAD-RVFENEMNALIAKTERAYEDTLFKD 813 (1080)
T ss_pred CCcccchhHHhcccH-----HHHHHHHHHHHHHHHHhhHH--hhccCchhhHHH-HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 788888887663222 23345555555555543221 1111 11 125 8889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCc
Q psy2393 466 VLYIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP 536 (576)
Q Consensus 466 ~~~~l~~~~~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~ 536 (576)
|+.+-+-=...+..+|...-- + .-. + ..+...+.+-..||+||.||+||.||+.++-++
T Consensus 814 aLK~Gfyd~qaArD~Yrel~g-----~-~mh---~---dLv~r~ietqtlLLaPi~Ph~aeyiw~~~~~~~ 872 (1080)
T KOG0437|consen 814 ALKYGFYDLQAARDMYRELCG-----E-GMH---R---DLVFRFIETQTLLLAPICPHLAEYIWRTVLKKN 872 (1080)
T ss_pred HHHhhhHHHHHHHHHHHHHhc-----c-ccc---H---HHHHHHHHHHHHHHhccchHHHHHHHHHhccCC
Confidence 998765544555555544221 0 011 1 122246677888999999999999999987653
No 59
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=7.2e-37 Score=290.69 Aligned_cols=193 Identities=24% Similarity=0.267 Sum_probs=163.0
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 89 (576)
++.++|+|. |||+|++||||+|+++.+|+++||+|++| ++|.|++|+||||+||+.+|++.|++|+++++++.
T Consensus 19 ~~~~~y~~g--pt~y~~~HiGH~r~~v~~Dvl~R~lr~~G-----~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~ 91 (213)
T cd00672 19 GLVTMYVCG--PTVYDYAHIGHARTYVVFDVLRRYLEDLG-----YKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYT 91 (213)
T ss_pred CCceEEEeC--CccCCCcccccchhHHHHHHHHHHHHhcC-----CeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 555777777 66669999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCccc-cccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCC
Q psy2393 90 SNRKKYLDGFYIKF-DNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYG 168 (576)
Q Consensus 90 ~~~~~~l~~lgi~~-d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g 168 (576)
+.|++++++|||++ |.|++| |. .
T Consensus 92 ~~f~~~~~~l~i~~~d~~~rt------------------------------Wh-~------------------------- 115 (213)
T cd00672 92 KEFFEDMKALNVLPPDVVPRV------------------------------WH-I------------------------- 115 (213)
T ss_pred HHHHHHHHHcCCCCCCcceee------------------------------hh-H-------------------------
Confidence 99999999999998 899888 11 0
Q ss_pred CccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcc
Q psy2393 169 DFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWD 248 (576)
Q Consensus 169 ~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~ 248 (576)
.| +.. ..++
T Consensus 116 -ec--------------------------------------~am---~~~~----------------------------- 124 (213)
T cd00672 116 -EC--------------------------------------SAM---AMKY----------------------------- 124 (213)
T ss_pred -HH--------------------------------------HHH---HHHH-----------------------------
Confidence 01 111 0011
Q ss_pred cccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHH
Q psy2393 249 ISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFW 328 (576)
Q Consensus 249 isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~ 328 (576)
.|-+ ++ +|.+|.|++|+|+.++
T Consensus 125 -------lg~~-----------------------------------------~d----------ih~~G~Dl~fpH~~~~ 146 (213)
T cd00672 125 -------LGET-----------------------------------------FD----------IHGGGVDLIFPHHENE 146 (213)
T ss_pred -------cCCC-----------------------------------------cc----------EEeecCCCCcChHHHH
Confidence 1211 11 9999999999999999
Q ss_pred HHHHHhc-CCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccc
Q psy2393 329 PAILKFS-GRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFN 397 (576)
Q Consensus 329 ~a~l~~~-~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs 397 (576)
.++..+. |.+.++.+++.|+|.++|+|||||+||+|+++|+++. +|+|++|||+++. .++++++|+
T Consensus 147 ~a~~~a~~g~~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~-~~~da~R~~~l~~--~~~~~l~f~ 213 (213)
T cd00672 147 IAQSEAATGKPFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKK-YDPEVLRLALLSS--HYRSPLDFS 213 (213)
T ss_pred HHHHHHHhCCCCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHH-cCHHHHHHHHHhC--CcCCCCCCC
Confidence 9887774 5555578888899999999999999999999999999 9999999999987 566777775
No 60
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=100.00 E-value=1e-35 Score=324.44 Aligned_cols=334 Identities=17% Similarity=0.172 Sum_probs=253.6
Q ss_pred CCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH---cC--------C
Q psy2393 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK---AG--------M 79 (576)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~---~g--------~ 79 (576)
+++++|..+.|||+|++||||+|+++++|+++|++++.| ++|.....++|.|.++...+.. .+ .
T Consensus 111 ~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g-----~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~ 185 (566)
T TIGR00456 111 NKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLG-----YDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVK 185 (566)
T ss_pred CCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCC-----CCeeEEeeecchHHHHHHHHHHHHHhCCccccCccc
Confidence 568999999999999999999999999999999999999 9999999999998876654421 00 0
Q ss_pred -------------------------------------CH------HHHHHHHHHHHHHHHhhcCccccccccCCChhhHH
Q psy2393 80 -------------------------------------TP------KEFINNISSNRKKYLDGFYIKFDNWYSTDSIENID 116 (576)
Q Consensus 80 -------------------------------------~~------~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~ 116 (576)
++ +..++...+.+++++++|||.+|.+++..+..+..
T Consensus 186 ~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~ 265 (566)
T TIGR00456 186 KPDHGLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFDSFVWEGESVKNG 265 (566)
T ss_pred CChHHHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeccccccccc
Confidence 01 12355678899999999999999998777667788
Q ss_pred HHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccE
Q psy2393 117 LVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPI 196 (576)
Q Consensus 117 ~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~ 196 (576)
.+..++..|. ++|++|++ +..|.+..
T Consensus 266 ~~~~v~~~L~-~~g~~~~~-Ga~~~~~~---------------------------------------------------- 291 (566)
T TIGR00456 266 MVPKVLEDLK-EKGLVVED-GALWLDLT---------------------------------------------------- 291 (566)
T ss_pred cHHHHHHHHH-HCCCEEEc-CCEEEEcc----------------------------------------------------
Confidence 8999999999 99999976 66655210
Q ss_pred EeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCC-CCcccccCCCCCCeecCCCCCcEEEEEeecc
Q psy2393 197 IKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKF-NDWDISRDAPYFGIKIPNTLEKYFYVWLDAP 275 (576)
Q Consensus 197 ~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~ 275 (576)
.+ ++. .|..|-|+. |. .+|.--|
T Consensus 292 --------------~~-----------------------------~d~~~~~vl~ksD---Gt--------~~Y~t~D-- 315 (566)
T TIGR00456 292 --------------LF-----------------------------GDKDKDRVLQKSD---GT--------YLYLTRD-- 315 (566)
T ss_pred --------------cc-----------------------------cCCCCCeEEEECC---CC--------ceechhh--
Confidence 00 000 122233333 22 2332111
Q ss_pred cchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEeCCcc
Q psy2393 276 IGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKK 355 (576)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~~g~K 355 (576)
++|.. .+ +.. ...++|++.|.||..+...++ +.++++|++.|..+.||+|.+++|.|
T Consensus 316 iA~~~------~k------------~~~----~~d~iI~V~g~~q~~h~~~v~-~~l~~lG~~~~~~l~h~~~~~V~~~k 372 (566)
T TIGR00456 316 IAYHL------DK------------LER----GFDKMIYVWGSDHHLHIAQFF-AILEKLGFYKKKELIHLNFGMVPLGS 372 (566)
T ss_pred HHHHH------HH------------Hhc----CCCEEEEEecCcHHHHHHHHH-HHHHHcCCCCCCceEEEEEEEEECCC
Confidence 11111 00 000 113569999999974434443 56889998888899999999999999
Q ss_pred ccccCCCccChh-----------------------HHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHH
Q psy2393 356 MSKSNKIGISPL-----------------------YYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGK 412 (576)
Q Consensus 356 MSKS~gn~i~~~-----------------------dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~ 412 (576)
||||+||+|+++ ++++. +|.|++||++++..+ ..|++||++.+.+. +++..++
T Consensus 373 mSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~-vg~dAvRy~~L~~~~--~~d~~Fd~d~~~~~-~~n~~~y 448 (566)
T TIGR00456 373 MKTRRGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADA-VGIGAVRYFDLSQNR--ETHYVFDWDAMLSF-EGNTAPY 448 (566)
T ss_pred CCccCCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHH-hcccceeeHHhhcCC--CCCceecHHHHhcc-CCCCchh
Confidence 999999999998 77777 999999999999853 47899999987776 6888999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCC-----cc-cCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcCc
Q psy2393 413 YINIASRSSSFIEKYFKGYLNM-----KW-VKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKP 486 (576)
Q Consensus 413 ~~n~~~R~~~~~~~~~~~~~~~-----~~-~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k~ 486 (576)
++|+++|+++++++...+..+. .+ .+++..|+..+..+++.+.+++++++++.+++++++++..+|+||+.++.
T Consensus 449 iqYa~aR~~SIlrK~~~~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La~~~N~yy~~~~V 528 (566)
T TIGR00456 449 IQYAHARICSILRKADIDGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELASLFSSFYKACPV 528 (566)
T ss_pred HHHHHHHHHHHHHhcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999874322211 11 12227799999999999999999999999999999999999999998854
No 61
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.8e-35 Score=311.33 Aligned_cols=341 Identities=17% Similarity=0.167 Sum_probs=257.8
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH--------c---
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK--------A--- 77 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~--------~--- 77 (576)
..+++++|....|+|+||+||||+|+.|++|+++|.++..| |+|.....++|.|..+...+.. .
T Consensus 114 ~~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~G-----y~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~ 188 (577)
T COG0018 114 GKGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLG-----YDVTRENYVNDWGTQIGMLALSYEKRGREALGLT 188 (577)
T ss_pred CCCCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcC-----CCeeEEeeECcHHHHHHHHHHHHHHhccccccCC
Confidence 35689999999999999999999999999999999999999 9999999999998877643310 0
Q ss_pred --------------------CCC-----------------H-----HHHHHHHHHHHHHHHhhcCccccccccCCChhhH
Q psy2393 78 --------------------GMT-----------------P-----KEFINNISSNRKKYLDGFYIKFDNWYSTDSIENI 115 (576)
Q Consensus 78 --------------------g~~-----------------~-----~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~ 115 (576)
... . +.+++.....+++++.+|||++|.|+..++..+.
T Consensus 189 ~~~~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~ 268 (577)
T COG0018 189 PEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYN 268 (577)
T ss_pred CCcchHHHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCcccceeeccchhhhc
Confidence 001 0 0156677889999999999999999988887888
Q ss_pred HHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCcc
Q psy2393 116 DLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKP 195 (576)
Q Consensus 116 ~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~ 195 (576)
..+..++..|. ++|++|+.++..+.
T Consensus 269 ~~~~~vv~~L~-~~~~~~e~~GA~~v------------------------------------------------------ 293 (577)
T COG0018 269 GKVEKVVEDLE-EKGLLYEDDGALVV------------------------------------------------------ 293 (577)
T ss_pred ccHHHHHHHHH-hcCCEeeeCCeEEE------------------------------------------------------
Confidence 89999999999 99999996544322
Q ss_pred EEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeecc
Q psy2393 196 IIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAP 275 (576)
Q Consensus 196 ~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~ 275 (576)
++ .++. +. +..++..|.|+. |.++|.--|
T Consensus 294 ----------dl--~~~~----~~----------------------gd~~~~vl~KSD-----------Gt~lY~t~D-- 322 (577)
T COG0018 294 ----------DL--LKFK----KF----------------------GDDKDRVLQKSD-----------GTYLYFTRD-- 322 (577)
T ss_pred ----------eh--hhhh----hc----------------------CCCCCeEEEEcC-----------CCeeeehhH--
Confidence 22 2211 11 233455566655 334443322
Q ss_pred cchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhcCCCCCc-EEeee--ccEEe-
Q psy2393 276 IGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPN-NIFVH--GFMTI- 351 (576)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~~~p~-~~~~~--g~v~~- 351 (576)
++|. ..+. . ....++|+|+|.||.-+...++. .+..+|+..++ .++|+ |++..
T Consensus 323 IAy~------~~K~------------~----~~~d~~IyV~gadq~~~~~ql~~-~l~~~g~~~~~~~~~h~~~~l~~~~ 379 (577)
T COG0018 323 IAYH------LYKF------------E----RGFDKLIYVLGADQHGHFKQLKA-VLELLGYGPDKEVLLHQGVGLVRGG 379 (577)
T ss_pred HHHH------HHHH------------h----cCCCEEEEEeCCcchhHHHHHHH-HHHHhcCCCccceEEEEEEeeeECC
Confidence 1121 1110 0 11235699999999855555554 46677777664 33333 44444
Q ss_pred CCccccccCCCccChhHHhhcCCC----------------------hhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHH
Q psy2393 352 NGKKMSKSNKIGISPLYYLKIGMN----------------------PEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDL 409 (576)
Q Consensus 352 ~g~KMSKS~gn~i~~~dll~~g~g----------------------~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~ 409 (576)
+|.||||+.|++|+++|+++. .+ .||+||++++.++ ..+++|+|+.+++... +.
T Consensus 380 ~g~kmStR~G~~vtl~dllde-~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~--~~~~~Fd~d~~lsfeg-Nt 455 (577)
T COG0018 380 EGVKMSTRAGNVVTLDDLLDE-AGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLSRSR--DKDYVFDWDKALSFEG-NT 455 (577)
T ss_pred CCccccccCCceEEHHHHHHH-HHHHhhhHhhhhhhhhHHHHHHhhhhhHHHHHHhcCC--CCCcEeeHHHHHhccC-CC
Confidence 677999999999999999998 77 9999999999844 4788999999998875 78
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCC------cccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q psy2393 410 IGKYINIASRSSSFIEKYFKGYLNM------KWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFD 482 (576)
Q Consensus 410 ~~~~~n~~~R~~~~~~~~~~~~~~~------~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~ 482 (576)
..+++++++|+++++++......+. .+.. +...|+.+|..+++.+.++++++++|.++.|+++++..||+||+
T Consensus 456 ~pYvQYA~ARi~SIlrka~e~~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY~ 535 (577)
T COG0018 456 APYVQYAHARICSILRKAGEDELDLSTEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLAGSFNSFYN 535 (577)
T ss_pred chhHHHHHHHHHHHHHhccccccccccccchhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999864322221 1221 12889999999999999999999999999999999999999999
Q ss_pred hcCcc
Q psy2393 483 QNKPW 487 (576)
Q Consensus 483 ~~k~~ 487 (576)
.++..
T Consensus 536 ~~~Vl 540 (577)
T COG0018 536 ACPVL 540 (577)
T ss_pred hCCcC
Confidence 99854
No 62
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=100.00 E-value=1.1e-34 Score=293.33 Aligned_cols=270 Identities=21% Similarity=0.280 Sum_probs=194.4
Q ss_pred CCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcc------------------cHHHHH
Q psy2393 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAH------------------GAAIMI 72 (576)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~------------------G~~i~~ 72 (576)
+.+++|++|+ ||||.+||||++.++.+|+++|++|++| ++|.|++|+|+| |.|+..
T Consensus 18 ~~~~~v~tgi-~psG~~HIG~~~e~i~~D~i~R~lr~~G-----~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ 91 (353)
T cd00674 18 KEKYVVASGI-SPSGHIHIGNFREVITADLVARALRDLG-----FEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSS 91 (353)
T ss_pred CCeEEEecCC-CCCCCcccCccHHHHHHHHHHHHHHHcC-----CCEEEEEEEcCCCcccccccchhhHHHHhcCccchh
Confidence 3567777777 5999999999999999999999999999 999999999999 899999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCcccccc
Q psy2393 73 AAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDR 152 (576)
Q Consensus 73 ~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~ 152 (576)
.+++.|+++ ++++++.+.+++.|+.|||++|.+.+|.........+.++..|. +++.|..--.+.-=-+..++++|
T Consensus 92 ip~p~g~~~-~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~~~L~-~~~~I~~i~~~~~~~~~~~~~~P-- 167 (353)
T cd00674 92 VPDPFGCCE-SYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENILIALE-KRDEIMAILNEYRGRELQETWYP-- 167 (353)
T ss_pred chhhcCCCH-HHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHHHHHH-HCChHHHHHHHhcCCccCCCcee--
Confidence 999999988 99999999999999999999997777777777789999999999 99987532111100112223323
Q ss_pred ceeccCCCCCCCCCCCCccccCCCcCCCCc-c------CCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCC
Q psy2393 153 YIKGECPICNAKDQYGDFCECCSSIYTPTK-L------INPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKR 225 (576)
Q Consensus 153 ~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~-l------~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~ 225 (576)
+...|++||+...+.. . +...| .||+..+......- -||
T Consensus 168 --------------~~p~c~~cg~~~~~v~~~d~~~~~v~y~c-~cG~~g~~~~~~g~-~KL------------------ 213 (353)
T cd00674 168 --------------FMPYCEKCGKDTTTVEAYDAKAGTVTYKC-ECGHEETVDIRTGR-GKL------------------ 213 (353)
T ss_pred --------------eeeecCCcCcceeEEEEEeCCCCeEEEEc-CCCCEEEEeecCCC-ccc------------------
Confidence 5677888885422110 1 12244 47765553222100 022
Q ss_pred CChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccc
Q psy2393 226 LQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFI 305 (576)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w 305 (576)
.|-+ .|+-. |. ++ | .
T Consensus 214 --------------------~Wr~-----dW~~r-----------W~-----~l----------~--------V------ 228 (353)
T cd00674 214 --------------------TWRV-----DWPMR-----------WA-----IL----------G--------V------ 228 (353)
T ss_pred --------------------CCCC-----Cchhh-----------hh-----hc----------C--------C------
Confidence 1211 12111 10 00 0 0
Q ss_pred cCCCcceEEEeeecCcch---hHhHHHHHHH-hcCCCCCcEEeeeccEEeCCc-cccccCCCccChhHHhhcCCChhHHH
Q psy2393 306 SSPNTEQYHFIGKDIFYF---HILFWPAILK-FSGRKLPNNIFVHGFMTINGK-KMSKSNKIGISPLYYLKIGMNPEWLR 380 (576)
Q Consensus 306 ~~~~~~~i~~~G~D~~~f---h~~~~~a~l~-~~~~~~p~~~~~~g~v~~~g~-KMSKS~gn~i~~~dll~~g~g~d~lR 380 (576)
.+.+.|+||... +.... +++. .+|.+.| ..+.||||+++|+ |||||+||+|+++|+++. +++|++|
T Consensus 229 ------d~E~~GkDh~~~ggs~~~~~-~i~~~ilg~~~P-~~~~ye~V~l~gg~KMSKSkGnvI~~~dll~~-~~~dalR 299 (353)
T cd00674 229 ------DFEPFGKDHASAGGSYDTGK-EIAREIFGGEPP-VPVMYEFIGLKGGGKMSSSKGNVITPSDWLEV-APPEVLR 299 (353)
T ss_pred ------CEEeeCccccccccHHHHHH-HHHHHHhCCCCC-eEEEeeeEEeCCCCccCCCCCCcCCHHHHHHH-hChHHHH
Confidence 166789999754 32222 2455 7787777 4488999999766 999999999999999999 9999999
Q ss_pred HHHHhhCCCCCCCcccchh
Q psy2393 381 YYIASKLNNKIEDIDFNSQ 399 (576)
Q Consensus 381 ~~l~~~~~~~~~d~~fs~~ 399 (576)
|++++.. ....+++|+++
T Consensus 300 ~~~l~~~-~~~~~i~Fd~~ 317 (353)
T cd00674 300 YLYARRK-NPEKHIGFDLD 317 (353)
T ss_pred HHHHhCC-CCCCCCCcChh
Confidence 9999874 34577888875
No 63
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-32 Score=299.29 Aligned_cols=336 Identities=12% Similarity=0.087 Sum_probs=245.8
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH---cCC-------
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK---AGM------- 79 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~---~g~------- 79 (576)
.+++++|....|+|+|++||||+|+.+++|+++|.++..| |+|.....++|.|.++...+.. .|.
T Consensus 111 ~~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G-----~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~ 185 (562)
T PRK12451 111 CEKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCG-----YEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKED 185 (562)
T ss_pred CCCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCC-----CCeEEEeeecCchHHHHHHHHHHHHhCCccccccC
Confidence 3578999999999999999999999999999999999999 9999999999999977654421 111
Q ss_pred ------------------------------------C------HHHHHHHHHHHHHHHHhhcCccccccccCCChhhHHH
Q psy2393 80 ------------------------------------T------PKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDL 117 (576)
Q Consensus 80 ------------------------------------~------~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~ 117 (576)
+ .+.+++...+.|++++++|||.||.+...+ .|...
T Consensus 186 ~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~es--~~~~~ 263 (562)
T PRK12451 186 PIRELFKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQGEA--FYNDL 263 (562)
T ss_pred chHHHHHHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeecchH--hhhhh
Confidence 0 112345567789999999999999554433 56777
Q ss_pred HHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccEE
Q psy2393 118 VQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPII 197 (576)
Q Consensus 118 v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~ 197 (576)
+.++++.|. ++|++|+.++..|.+..
T Consensus 264 ~~~v~~~L~-~~g~~~e~dGa~~~~~~----------------------------------------------------- 289 (562)
T PRK12451 264 MEDFIGILE-EHDLLEESEGALVVNLE----------------------------------------------------- 289 (562)
T ss_pred HHHHHHHHH-HCCCEEecCCeEEEEec-----------------------------------------------------
Confidence 899999999 99999988877665210
Q ss_pred eeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccc
Q psy2393 198 KSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIG 277 (576)
Q Consensus 198 ~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~ 277 (576)
.+ |.+|..+-|+. |. .+|.--| ++
T Consensus 290 -------------~~------------------------------g~~~~vl~ksD---Gt--------~~Y~t~D--iA 313 (562)
T PRK12451 290 -------------EE------------------------------GMPPCLIRKSD---GA--------TIYATRD--LT 313 (562)
T ss_pred -------------cc------------------------------CCCceEEEeCC---Cc--------cccchhH--HH
Confidence 00 00122222322 21 1221111 11
Q ss_pred hhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhcCCCCC--cEEeeeccEEeCCcc
Q psy2393 278 YLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLP--NNIFVHGFMTINGKK 355 (576)
Q Consensus 278 ~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~~~p--~~~~~~g~v~~~g~K 355 (576)
|.. .+ +.. + ...++|+|.|.||..+...++ +++..+|+..+ -.++.+|+|.++|+|
T Consensus 314 ~~~------~k------------~~~-~--~~d~~IyV~g~dq~~h~~~l~-~~~~~lg~~~~~~l~h~~~g~V~~~g~k 371 (562)
T PRK12451 314 AAL------YR------------QNT-F--GFDKALYVVGPEQSLHFNQFF-TVLKKLGYTWVDGMEHVPFGLILKDGKK 371 (562)
T ss_pred HHH------HH------------hhc-c--CCCEEEEEeCCcHHHHHHHHH-HHHHHcCCCcccCeEEEeeeeEecCCCC
Confidence 110 00 000 0 012469999999974333343 45778887544 367888999999999
Q ss_pred ccccCCCccChhHHhhc------------------------CCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHH
Q psy2393 356 MSKSNKIGISPLYYLKI------------------------GMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIG 411 (576)
Q Consensus 356 MSKS~gn~i~~~dll~~------------------------g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~ 411 (576)
|||++|++|+++||++. .+|.+++||++++.. ...+++|+++.+.+.. ++...
T Consensus 372 mStR~G~~v~l~dLldea~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~~~--~~~~~~Fd~d~~l~~~-g~t~p 448 (562)
T PRK12451 372 MSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKNE--RMHNIEFSLENMLKFE-GETGP 448 (562)
T ss_pred CcCCCCCeeEHHHHHHHHHHHHHHHHHhhccccccHHHHHHHhccceeeeHHhhcC--CCCCceECHHHHhCcC-CCccH
Confidence 99999999999999983 267999999999984 4478999999977764 44466
Q ss_pred HHHHHHHHHHHHHHHHcCCC--CCCcc-cCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcCcc
Q psy2393 412 KYINIASRSSSFIEKYFKGY--LNMKW-VKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPW 487 (576)
Q Consensus 412 ~~~n~~~R~~~~~~~~~~~~--~~~~~-~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k~~ 487 (576)
+++++++|+++++++..... .+..+ .+.+..|+..+..+++.+.+++++++++.+++++++++..+|+||+.++..
T Consensus 449 YiQYa~AR~~SIlrka~~~~~~~~~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA~~fN~fy~~~~Vl 527 (562)
T PRK12451 449 YVQYTHARACSILRKESVEFETCTFALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFNKYYGNVRIL 527 (562)
T ss_pred HHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999863110 11112 122278999999999999999999999999999999999999999988754
No 64
>PLN02286 arginine-tRNA ligase
Probab=100.00 E-value=1.4e-31 Score=290.77 Aligned_cols=333 Identities=12% Similarity=0.089 Sum_probs=240.3
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH----cCC------
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK----AGM------ 79 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~----~g~------ 79 (576)
++++++|....|+|+|++||||+|+.+++|+|+|.++..| |+|.....++|.|.++...+.. .+.
T Consensus 115 ~~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G-----~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~ 189 (576)
T PLN02286 115 PVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSG-----VEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSD 189 (576)
T ss_pred CCceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcC-----CceEEEEeecchHHHHHHHHHHHHHhcCcccccCc
Confidence 4478999999999999999999999999999999999999 9999999999999987654422 110
Q ss_pred -------------------CH------------------------HHHHHHHHHHHHHHHhhcCccccccccCCChhhHH
Q psy2393 80 -------------------TP------------------------KEFINNISSNRKKYLDGFYIKFDNWYSTDSIENID 116 (576)
Q Consensus 80 -------------------~~------------------------~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~ 116 (576)
++ +.+++.....|++.+.+|||++|.. .+..|..
T Consensus 190 ~~i~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd~~---ges~y~~ 266 (576)
T PLN02286 190 QAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEEK---GESFYNP 266 (576)
T ss_pred ccHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeec---Cchhhhh
Confidence 00 1234455677899999999999873 2335777
Q ss_pred HHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccE
Q psy2393 117 LVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPI 196 (576)
Q Consensus 117 ~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~ 196 (576)
.+..++..|. ++|++|+.++..|.+-.. . +
T Consensus 267 ~~~~vi~~L~-~~g~~~e~dGa~~v~l~~-------------------------------------~--------~---- 296 (576)
T PLN02286 267 YIPGVIEELE-SKGLVVESDGARVIFVEG-------------------------------------F--------D---- 296 (576)
T ss_pred hHHHHHHHHH-HCCCEEeeCCceEeeccC-------------------------------------C--------C----
Confidence 7899999999 999999887766542100 0 0
Q ss_pred EeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeeccc
Q psy2393 197 IKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPI 276 (576)
Q Consensus 197 ~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~ 276 (576)
.+..|-|+. |. .+|
T Consensus 297 ------------------------------------------------~~~vl~ksD---Gt--------~tY------- 310 (576)
T PLN02286 297 ------------------------------------------------IPLIVVKSD---GG--------FNY------- 310 (576)
T ss_pred ------------------------------------------------CceEEEECC---Cc--------hhh-------
Confidence 011111221 11 111
Q ss_pred chhhh-cchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhcCCC-C--C--cEEeeeccEE
Q psy2393 277 GYLAS-LKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRK-L--P--NNIFVHGFMT 350 (576)
Q Consensus 277 ~~~~~-~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~~-~--p--~~~~~~g~v~ 350 (576)
++. +.+...+ +.. + ...++|+|.|.||..+...++ +++..+|+. . . -.++.+|+|+
T Consensus 311 --~t~DIA~~~~k------------~~~-~--~~d~~IyVvg~~q~~hf~~v~-~~l~~lG~~~~~~~~~l~h~~~g~V~ 372 (576)
T PLN02286 311 --ASTDLAALWYR------------LNE-E--KAEWIIYVTDVGQQQHFDMVF-KAAKRAGWLPEDTYPRLEHVGFGLVL 372 (576)
T ss_pred --HHHHHHHHHHH------------Hhc-c--CCCEEEEEEeCcHHHHHHHHH-HHHHHcCCCccccCCceEEEeeccEE
Confidence 111 0000000 000 0 012458889999874333333 467788864 3 2 3789999997
Q ss_pred e-CCccccccCCCccChhHHhhc----------------------------CCChhHHHHHHHhhCCCCCCCcccchhhH
Q psy2393 351 I-NGKKMSKSNKIGISPLYYLKI----------------------------GMNPEWLRYYIASKLNNKIEDIDFNSQSF 401 (576)
Q Consensus 351 ~-~g~KMSKS~gn~i~~~dll~~----------------------------g~g~d~lR~~l~~~~~~~~~d~~fs~~~~ 401 (576)
. +|+||||++|++|+++||++. .+|.+++||++++.+ ...+++|+++.+
T Consensus 373 ~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~--~~~~~~Fd~d~~ 450 (576)
T PLN02286 373 GEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNN--RLTNYTFSFDQM 450 (576)
T ss_pred CCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcC--CCCCCccCHHHH
Confidence 4 888999999999999999983 167899999999984 447899999998
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHcCCC--CC----Cccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2393 402 ISCVNSDLIGKYINIASRSSSFIEKYFKGY--LN----MKWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT 474 (576)
Q Consensus 402 ~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~--~~----~~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~ 474 (576)
.+.. ++...+++++++|+++++++..... .. ..+. +++..|+..|..+++.|.++.++++++.++.++++++
T Consensus 451 l~~~-g~t~pYlQYahAR~~SIlrKa~~~~~~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA 529 (576)
T PLN02286 451 LDLK-GNTAVYLLYAHARICSIIRKSGKDIDELKKTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLS 529 (576)
T ss_pred Hhhc-CCChHHHHHHHHHHHHHHHhccCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 7664 5556699999999999999863211 11 1121 2227899999999999999999999999999999999
Q ss_pred HHHHHhhhhcCcc
Q psy2393 475 NFINIFFDQNKPW 487 (576)
Q Consensus 475 ~~~n~y~~~~k~~ 487 (576)
..+|+||+.++..
T Consensus 530 ~~F~~fY~~~~Vl 542 (576)
T PLN02286 530 EKFTKFYSNCKVN 542 (576)
T ss_pred HHHHHHHhcCccC
Confidence 9999999988643
No 65
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=8.5e-32 Score=288.02 Aligned_cols=268 Identities=20% Similarity=0.298 Sum_probs=184.8
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCccc--------------------HHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHG--------------------AAIMI 72 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G--------------------~~i~~ 72 (576)
.++|.+|+ +|||.+||||+++++.+|+++|++|.+| ++|.+++|+|||| .|+..
T Consensus 24 ~~~~~~g~-~psG~~HiG~~~e~~~~d~v~r~lr~~G-----~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~ 97 (510)
T PRK00750 24 PVVVETGI-GPSGLPHIGNFREVARTDMVRRALRDLG-----IKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTE 97 (510)
T ss_pred cEEEEeCC-CCCCCcccccccchhhHHHHHHHHHHcC-----CcEEEEEEEecCCcccccCCCCCchHHHHHhcCccccc
Confidence 36666655 7999999999999999999999999999 9999999999996 23333
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCcccccc
Q psy2393 73 AAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDR 152 (576)
Q Consensus 73 ~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~ 152 (576)
.+++.|+ ++++++++.+.+.+.|+.+||++|.+.+|.........+.+...|. +++.|..--.+.-=.+..++|+|
T Consensus 98 ~p~p~G~-~~~~~~~~~~~~~~~~~~~gi~~d~~~~t~~y~~g~~~~~i~~~l~-~~~~i~~il~~~~~~~~~~~~~P-- 173 (510)
T PRK00750 98 IPDPFGC-HESYAEHFNAPLREFLDRFGIEYEFISATECYKSGRYDEAILTALE-NRDEIMEILLPYLGEERQATYSP-- 173 (510)
T ss_pred CCCCCCC-chHHHHHHHHHHHHHHHHcCCceEEEehhhhhccCchHHHHHHHHH-hHHHHHHHHHHhcCCccCCCeee--
Confidence 4445565 8999999999999999999999997777765555567777777787 77776532211111122233333
Q ss_pred ceeccCCCCCCCCCCCCccccCCCcCCCCc----cCC---CcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCC
Q psy2393 153 YIKGECPICNAKDQYGDFCECCSSIYTPTK----LIN---PYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKR 225 (576)
Q Consensus 153 ~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~----l~~---p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~ 225 (576)
+...|++||+..+..- ... -+++.||+..+...... --||
T Consensus 174 --------------~~pic~~cg~~~~~~~~~~d~~~~~v~y~~~cG~~~~~~~~~g-~~KL------------------ 220 (510)
T PRK00750 174 --------------FLPICPKCGKVLTTPVISYDAEAGTVTYDCECGHEGEVPVTGG-HGKL------------------ 220 (510)
T ss_pred --------------eeeeCCCCCccceEEEEEEeCCCCEEEEEcCCCCEEEEecCCC-Cccc------------------
Confidence 5677899998765321 111 12335777655333221 0122
Q ss_pred CChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccc
Q psy2393 226 LQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFI 305 (576)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w 305 (576)
.|-+ +|+-. |. ++ |
T Consensus 221 --------------------~Wr~-----dW~~r-----------W~-----~l----------~--------------- 234 (510)
T PRK00750 221 --------------------QWKV-----DWPMR-----------WA-----AL----------G--------------- 234 (510)
T ss_pred --------------------CCCC-----CcHHH-----------HH-----Hc----------C---------------
Confidence 1211 12111 10 00 0
Q ss_pred cCCCcceEEEeeecCcc-hhHhHHHHHHH-hcCCCCCcEEeeeccEEeC-CccccccCCCccChhHHhhcCCChhHHHHH
Q psy2393 306 SSPNTEQYHFIGKDIFY-FHILFWPAILK-FSGRKLPNNIFVHGFMTIN-GKKMSKSNKIGISPLYYLKIGMNPEWLRYY 382 (576)
Q Consensus 306 ~~~~~~~i~~~G~D~~~-fh~~~~~a~l~-~~~~~~p~~~~~~g~v~~~-g~KMSKS~gn~i~~~dll~~g~g~d~lR~~ 382 (576)
..+.+.|+||.. .+... ..+.. .+|.+.|.. ++|||++++ |+|||||+||+|++.|+++. +++|++|||
T Consensus 235 -----Vd~e~~GkDh~~~s~~~~-~~i~~~ilg~~~P~~-~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~-~~pd~lR~~ 306 (510)
T PRK00750 235 -----VDFEPFGKDHASASYDTS-KKIAREILGGEPPEP-FVYELFLDKKGEKISKSKGNVITIEDWLEY-APPESLRLF 306 (510)
T ss_pred -----CCEEeeCcccCcchHHHH-HHHHHHHcCCCCCee-eeeeeEEeCCCCcccccCCCccCHHHHHHH-CCHHHHHHH
Confidence 016678999987 44333 23444 778877754 889999996 99999999999999999999 999999988
Q ss_pred HHhhCCCCCCCcccch
Q psy2393 383 IASKLNNKIEDIDFNS 398 (576)
Q Consensus 383 l~~~~~~~~~d~~fs~ 398 (576)
++.. +...++++|++
T Consensus 307 l~~~-~~~~~~~~f~~ 321 (510)
T PRK00750 307 MFAR-PKPAKRLDFDV 321 (510)
T ss_pred HHhC-CCCCCCCcccH
Confidence 8764 34557788887
No 66
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.96 E-value=4e-29 Score=265.03 Aligned_cols=267 Identities=19% Similarity=0.215 Sum_probs=176.9
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcc------------------cHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAH------------------GAAIMIA 73 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~------------------G~~i~~~ 73 (576)
.+++|.+|.+ |||.+||||++..+.+|+++|++|++| ++|.+++++||| |.|+...
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g-----~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~v 91 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFREVITADAIARALRDSG-----SEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRI 91 (515)
T ss_pred CeEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcC-----CCEEEEEEEcCCcccccccccccHHHHHhCCCcceec
Confidence 4677777776 999999999999999999999999999 999999999999 9999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHhhcCccccccccCCCh---hhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCcccc
Q psy2393 74 AEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSI---ENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLP 150 (576)
Q Consensus 74 a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~---~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~ 150 (576)
+...|++ .++++|+.+.+.+.|+.|||+++....|... .|.+.+..++.+-. +=..|...... .+..++|+|
T Consensus 92 pdp~g~~-~s~~~h~~~~~~~~l~~~gi~~e~~s~te~Y~sG~~~~~i~~~L~~~~-~I~~il~~~~~---~~~~~~~~P 166 (515)
T TIGR00467 92 PDPEGCK-TSYAEHFLIPFLESLPVLGINPEFIRASKQYTSGLYASQIKIALDHRK-EISEILNEYRT---SKLEENWYP 166 (515)
T ss_pred CCCCCCc-HHHHHHHHHHHHHHHHHcCCeEEEEEHHHhhhcCChHHHHHHHHHhHH-HHHHHHHHhcC---CccCCCcee
Confidence 9999996 8999999999999999999998766544321 23333333332222 11111100000 011222222
Q ss_pred ccceeccCCCCCCCCCCCCccccCCCcCCCCc------cCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC
Q psy2393 151 DRYIKGECPICNAKDQYGDFCECCSSIYTPTK------LINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK 224 (576)
Q Consensus 151 ~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~------l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~ 224 (576)
+...|++||+..++.. -+...| .||+..+......-- || ++..|+.++|
T Consensus 167 ----------------~~pic~~cGrv~~~~~~~~~~~~v~Y~c-~cG~~g~~~~~~g~~-KL--~WkvdW~~RW----- 221 (515)
T TIGR00467 167 ----------------ISVFCENCGRDTTTVNNYDNEYSIEYSC-ECGNQESVDIYTGAI-KL--PWRVDWPARW----- 221 (515)
T ss_pred ----------------eeeecCCcCccCceEEEecCCceEEEEc-CCCCEEEEeecCCCc-cc--CCCCCcHhhH-----
Confidence 5677899998755321 122344 477766644332211 33 2222222222
Q ss_pred CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCccccccccccc
Q psy2393 225 RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEF 304 (576)
Q Consensus 225 ~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 304 (576)
.+ + | .+
T Consensus 222 --------------------------------~~--------------------l----------g--------V~---- 227 (515)
T TIGR00467 222 --------------------------------KI--------------------E----------K--------VT---- 227 (515)
T ss_pred --------------------------------hh--------------------h----------C--------cc----
Confidence 11 0 0 01
Q ss_pred ccCCCcceEEEeeecCcch----hHhHHHHHHHhcCCCCCcEEeeeccEEe--CCccccccCCCccChhHHhhcCCChhH
Q psy2393 305 ISSPNTEQYHFIGKDIFYF----HILFWPAILKFSGRKLPNNIFVHGFMTI--NGKKMSKSNKIGISPLYYLKIGMNPEW 378 (576)
Q Consensus 305 w~~~~~~~i~~~G~D~~~f----h~~~~~a~l~~~~~~~p~~~~~~g~v~~--~g~KMSKS~gn~i~~~dll~~g~g~d~ 378 (576)
+...|+||.-. -.....| ..++|..+|.. +.++|+.+ +|+|||||+||+|+++|+++. +++|+
T Consensus 228 --------~Ep~GkDH~~~ggsy~~~~~ia-~~~l~~~~P~~-~~ye~v~L~~~g~KMSKS~Gn~itl~dll~~-~~pda 296 (515)
T TIGR00467 228 --------FEPAGKDHAAAGGSYDTGVNIA-KEIFQYSPPVT-VQYEWISLKGKGGKMSSSKGDVISVKDVLEV-YTPEI 296 (515)
T ss_pred --------cccCCCCccCccCCchhHHHHH-HHHhCCCCCcC-cEEEEEEEcCCCccccCCCCCCccHHHHHHH-cCHHH
Confidence 22347777531 2223333 35677666643 44777756 667999999999999999999 99999
Q ss_pred HHHHHHhhCCCCCCCcccchhhH
Q psy2393 379 LRYYIASKLNNKIEDIDFNSQSF 401 (576)
Q Consensus 379 lR~~l~~~~~~~~~d~~fs~~~~ 401 (576)
+||++++. ...++++|+.+.+
T Consensus 297 lR~~~l~~--~~~~~ldFd~~~l 317 (515)
T TIGR00467 297 TRFLFART--KPEFHISFDLDVI 317 (515)
T ss_pred HHHHHhcc--CCCCCCcCCHHHH
Confidence 99998887 5567899999855
No 67
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.95 E-value=7.2e-27 Score=224.03 Aligned_cols=122 Identities=18% Similarity=0.254 Sum_probs=114.1
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 92 (576)
+++|..++|||||++||||+|+++++|+++|+++++| ++|.++.++||+|++|+..|.+.+. ++++++.+.+.+
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G-----~~V~~~~~~~D~G~qi~~~a~~~~~-~~~~~~~~~~~~ 74 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLG-----YDVTREYYINDWGRQIGLLILSLEK-WRKLVEESIKAD 74 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCC-----CcEEEEeccCCcHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999 9999999999999999999987755 899999999999
Q ss_pred HHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecC
Q psy2393 93 KKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDP 143 (576)
Q Consensus 93 ~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~ 143 (576)
.+++++|||.+|.+.++++ +...+..+++.|. ++|++|+.++.+++|+
T Consensus 75 ~~~~~~L~i~~d~~~~es~--~~~~~~~~i~~L~-~~g~~~~~~g~~~~~~ 122 (212)
T cd00671 75 LETYGRLDVRFDVWFGESS--YLGLMGKVVELLE-ELGLLYEEDGALWLDL 122 (212)
T ss_pred HHHHHHhCCcCceecchhh--hhhHHHHHHHHHH-HCCCEEEeCCcEEEec
Confidence 9999999999999999885 4889999999999 9999999988887753
No 68
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.89 E-value=2.3e-22 Score=207.21 Aligned_cols=129 Identities=20% Similarity=0.261 Sum_probs=99.8
Q ss_pred ccCCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc---------
Q psy2393 7 EFKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA--------- 77 (576)
Q Consensus 7 ~~~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~--------- 77 (576)
..+.+++++|..+.|+|+|++||||+|+.+++|+|+|.++..| |+|.....++|.|.++...+...
T Consensus 15 ~~~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G-----~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~ 89 (354)
T PF00750_consen 15 EKGKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAG-----YDVTRENYIGDWGTQIGLLAASYKKFGDEELL 89 (354)
T ss_dssp -TTTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTT-----EEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTS
T ss_pred ccCCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcC-----CeeeeEEEECCCCHHHHHHHHHHHhhhhhhhc
Confidence 3457789999999999999999999999999999999999999 99999999999999877544210
Q ss_pred ----------------------CC------------------------CHHHHHHH-HHHHHHHHHhhcCccccccccCC
Q psy2393 78 ----------------------GM------------------------TPKEFINN-ISSNRKKYLDGFYIKFDNWYSTD 110 (576)
Q Consensus 78 ----------------------g~------------------------~~~~~~~~-~~~~~~~~l~~lgi~~d~~~~t~ 110 (576)
.. ...+++.. +.+.++++|+++++.+|.++..+
T Consensus 90 ~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fDv~~~E~ 169 (354)
T PF00750_consen 90 EEDPIKHLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFDVWFDES 169 (354)
T ss_dssp HSSCHHHHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---SEEEEHC
T ss_pred ccccccchhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccc
Confidence 00 11123344 67788999999999999988776
Q ss_pred ChhhHHHHHHHHHHHHhcCCcEEecceeeee
Q psy2393 111 SIENIDLVQKIYDTLYNKAKLIINKKINQFF 141 (576)
Q Consensus 111 ~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~ 141 (576)
+..+...+..++..|. ++|++|+.++..|.
T Consensus 170 Es~~~~~v~~vl~~L~-e~g~~~~~dGa~~i 199 (354)
T PF00750_consen 170 ESFYSGKVDEVLERLK-EKGLLYESDGALWI 199 (354)
T ss_dssp HHHHTTHHHHHHHHHH-CTTTEEEETTEEEE
T ss_pred hhhhhhHHHHHHHHHH-hCCcEEecCCcEEE
Confidence 6667888999999999 99999988776665
No 69
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=99.88 E-value=7.6e-24 Score=211.58 Aligned_cols=259 Identities=22% Similarity=0.309 Sum_probs=139.6
Q ss_pred CCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCccc-------------------HHHH
Q psy2393 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHG-------------------AAIM 71 (576)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G-------------------~~i~ 71 (576)
.+..+|+.+.-+|+|.+|||++|..+.+|+++|.++.+| .+|.++..+||.+ .|+.
T Consensus 21 ~~~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g-----~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt 95 (360)
T PF01921_consen 21 GKEPYVFASGISPSGLPHIGNFREVLRADMVARALRDRG-----KDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLT 95 (360)
T ss_dssp --SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT------EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTT
T ss_pred CCccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcC-----CCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccc
Confidence 345667777789999999999999999999999999999 9999999999863 2333
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhhcCccccccccCCC---hhhHHH----------HHHHHHHHHhcCCcEEeccee
Q psy2393 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDS---IENIDL----------VQKIYDTLYNKAKLIINKKIN 138 (576)
Q Consensus 72 ~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~---~~~~~~----------v~~~~~~L~~~~g~iy~~~~~ 138 (576)
......|+ ...|++|+.+.+.+.|+.|||+++....|.. -.|.+. +.+++.... ... ...
T Consensus 96 ~VPdP~G~-~~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~-~~~-----~~~ 168 (360)
T PF01921_consen 96 RVPDPFGC-HESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQIRTALENRDEIREILNEYR-GRE-----RPE 168 (360)
T ss_dssp TSB-TTSS-SSCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHH-HHT-------T
T ss_pred cCCCCCCC-CccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhc-CcC-----CCC
Confidence 33333444 5579999999999999999998876665532 123333 333333332 111 111
Q ss_pred eeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCC--------CccCCCcccCCCCccEEeeecceeEecCch
Q psy2393 139 QFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTP--------TKLINPYSILSGTKPIIKSSKHFFFKLSDK 210 (576)
Q Consensus 139 ~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~--------~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~ 210 (576)
.|| .+...|++||+..+. ..-+...|..||+..+......- -+| +
T Consensus 169 ~y~------------------------Pf~piC~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~~g~-gKL--~ 221 (360)
T PF01921_consen 169 TYS------------------------PFLPICEKCGRIDTTEVTEYDPEGGTVTYRCEECGHEGEVDITGGN-GKL--Q 221 (360)
T ss_dssp T--------------------------SEEEEETTTEE--EEEEEEE--SSSEEEEE--TTS---EEETTTT--EEE---
T ss_pred Cee------------------------eeeeeccccCCcccceeeEeecCCCEEEEEecCCCCEEEEecCCCc-ccc--c
Confidence 222 145568888875332 12234577788887776655533 677 7
Q ss_pred hhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCC
Q psy2393 211 RCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGG 290 (576)
Q Consensus 211 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g 290 (576)
+..|+.++|. . .|+
T Consensus 222 WkvDW~mRW~----------------~------------------lgV-------------------------------- 235 (360)
T PF01921_consen 222 WKVDWPMRWA----------------A------------------LGV-------------------------------- 235 (360)
T ss_dssp HHHHHHHHHH----------------H------------------TT---------------------------------
T ss_pred CCCcChhhhh----------------h------------------cCc--------------------------------
Confidence 7677777661 1 111
Q ss_pred CCCcccccccccccccCCCcceEEEeeecCcchhHhHHHH--HH-HhcCCCCCcEEeeeccEEeCCc-cccccCCCccCh
Q psy2393 291 PKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPA--IL-KFSGRKLPNNIFVHGFMTINGK-KMSKSNKIGISP 366 (576)
Q Consensus 291 ~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a--~l-~~~~~~~p~~~~~~g~v~~~g~-KMSKS~gn~i~~ 366 (576)
+ +...|+||.-.-+.+-.+ +. ..+|.++| ..+.++|++++|+ |||||+||++++
T Consensus 236 ---------d------------fEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP-~~~~YE~~~~~g~~kmSsSkG~~~t~ 293 (360)
T PF01921_consen 236 ---------D------------FEPFGKDHASPGGSYDTSKRIAREILGYEPP-VPFPYEFFLDKGGGKMSSSKGNGITP 293 (360)
T ss_dssp ---------S------------EEEEEHHHHCTTSHHHHHHHHHHHCC------EEEEE--EEES--------------H
T ss_pred ---------e------------eccCCCccCCCCCChhhHHHHHHHHhCCCCC-CCCCeeEEEeCCCcccccCCCCccCH
Confidence 0 345688886533322222 33 44666655 5688999999776 999999999999
Q ss_pred hHHhhcCCChhHHHHHHHhhCCCCCCCcccc
Q psy2393 367 LYYLKIGMNPEWLRYYIASKLNNKIEDIDFN 397 (576)
Q Consensus 367 ~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs 397 (576)
+|+++- +.+++|||+++++.|....++.|+
T Consensus 294 ~e~L~~-~~PE~lr~l~~~~~P~~~~~~~~~ 323 (360)
T PF01921_consen 294 EEWLEY-APPESLRYLMARTKPNKAKDFSFD 323 (360)
T ss_dssp HHHHTT-S-HHHHHHHHHCS-TTS-EEE--S
T ss_pred HHHHHh-cCHHHHHHHHcccCCCcceEeccC
Confidence 999999 999999999999777766555544
No 70
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.8e-21 Score=197.79 Aligned_cols=258 Identities=22% Similarity=0.289 Sum_probs=162.9
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcc--------------------cHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAH--------------------GAAIMI 72 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~--------------------G~~i~~ 72 (576)
.-+++.+.-+|+|.+|||++|..+.+|+++|.++.+| ++|.+|.-+||+ |.|+..
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g-----~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~ 93 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRG-----DEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTE 93 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcC-----CceEEEEEccCCcccccCCCCCCChHHHHHHcCCcccc
Confidence 3466666779999999999999999999999999999 999999999986 333333
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhcCccccccccCCChh---hHHH----------HHHHHHHHHhcCCcEEecceee
Q psy2393 73 AAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIE---NIDL----------VQKIYDTLYNKAKLIINKKINQ 139 (576)
Q Consensus 73 ~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~---~~~~----------v~~~~~~L~~~~g~iy~~~~~~ 139 (576)
.....| .+..|++|+.+.|.+.|+.+||.+.....|.... |.+. +.+++.... .+ .-...
T Consensus 94 IPdP~G-~~~Sya~hf~~~f~~~l~~~Gi~~E~~s~se~Yk~G~~~~~i~~ale~rdeI~~il~~~~-~~-----~~~e~ 166 (521)
T COG1384 94 IPDPFG-CCDSYAEHFLRPFEEFLDEFGIEVEFVSATELYKSGLYDEAIRIALERRDEIMEILNEYR-GR-----ELEED 166 (521)
T ss_pred CCCCcc-ccchHHHHHHHHHHHHHHhcCCceEEEEhHHhhhcccHHHHHHHHHhhHHHHHHHHHHhc-CC-----cccCC
Confidence 333445 3668999999999999999999887665543211 2222 223333322 11 11122
Q ss_pred eecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCcc-------CCCcccCCCCccEEeeecceeEecCchhh
Q psy2393 140 FFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKL-------INPYSILSGTKPIIKSSKHFFFKLSDKRC 212 (576)
Q Consensus 140 ~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l-------~~p~~~~~~~~~~~~~~~~~f~~l~~~~~ 212 (576)
|| .+...|++||+..+..-+ +..+| .||+..+.-.. .+
T Consensus 167 ~~------------------------P~~piC~kcGri~~t~v~~~d~~~~v~Y~C-e~Gh~g~v~ir-~g--------- 211 (521)
T COG1384 167 WS------------------------PFMPICEKCGRILTTPVIEWDGEGTVEYRC-ECGHEGEVDIR-GG--------- 211 (521)
T ss_pred ce------------------------eccccccccCCcceeEEEEecCCceEEEEe-cCCccceeecc-cc---------
Confidence 33 266778888885432111 11122 23433221110 00
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCC
Q psy2393 213 IDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPK 292 (576)
Q Consensus 213 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~ 292 (576)
.+--.|-+ .|+.. |. ++ |
T Consensus 212 -----------------------------~~KL~WRv-----dWp~R-----------W~-----~l----------g-- 229 (521)
T COG1384 212 -----------------------------EGKLPWRV-----DWPMR-----------WA-----AL----------G-- 229 (521)
T ss_pred -----------------------------CcccccCc-----Cccch-----------hh-----cc----------C--
Confidence 01112211 23221 10 00 0
Q ss_pred CcccccccccccccCCCcceEEEeeecCcchhHhHHHHH--HH-hcCCCCCcEEeeeccEEeCC-ccccccCCCccChhH
Q psy2393 293 KKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAI--LK-FSGRKLPNNIFVHGFMTING-KKMSKSNKIGISPLY 368 (576)
Q Consensus 293 ~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~--l~-~~~~~~p~~~~~~g~v~~~g-~KMSKS~gn~i~~~d 368 (576)
.+ +...||||.-.-+.+=.+. +. ..|.++| .-+.+.|++++| +|||||+||+|+++|
T Consensus 230 ------Vd------------~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP-~~~~YE~i~lkg~~~mSsSkG~~i~~~d 290 (521)
T COG1384 230 ------VD------------FEPFGKDHAAAGGSYDTGKRIAREIFGYEPP-VPFVYEWILLKGGGKMSSSKGNVISLSD 290 (521)
T ss_pred ------cc------------cccCCcccccccCchHHHHHHHHHhcCCCCC-CCCceEEEEecCCcccccCCCcEEcHHH
Confidence 00 3346888864433333322 22 3466655 357789999966 899999999999999
Q ss_pred HhhcCCChhHHHHHHHhhCCCCCCCcccchh
Q psy2393 369 YLKIGMNPEWLRYYIASKLNNKIEDIDFNSQ 399 (576)
Q Consensus 369 ll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~ 399 (576)
+++- +.++.|||+++++.|....+++|+..
T Consensus 291 wlev-~~pE~lry~~~r~kP~r~~~~d~~~~ 320 (521)
T COG1384 291 WLEV-APPEVLRYLIARTKPNRHIDFDFDLG 320 (521)
T ss_pred HHHh-cCHhHeeeeeeecCCCcceecCCCCC
Confidence 9999 99999999999988887776666653
No 71
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.81 E-value=4.2e-19 Score=159.83 Aligned_cols=77 Identities=26% Similarity=0.251 Sum_probs=74.6
Q ss_pred EEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2393 16 VTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKY 95 (576)
Q Consensus 16 v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 95 (576)
|+.++|||||++||||+|+++++|+++|++|++| ++|.++.|+||+|.++...|.+.+.+++++++++.+.++++
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G-----~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 75 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLG-----YKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKED 75 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcC-----CCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred Hh
Q psy2393 96 LD 97 (576)
Q Consensus 96 l~ 97 (576)
++
T Consensus 76 ~~ 77 (143)
T cd00802 76 VE 77 (143)
T ss_pred HH
Confidence 98
No 72
>KOG4426|consensus
Probab=99.77 E-value=3.2e-16 Score=155.19 Aligned_cols=329 Identities=16% Similarity=0.162 Sum_probs=220.9
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHH----HHHHHHHc--------
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAA----IMIAAEKA-------- 77 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~----i~~~a~~~-------- 77 (576)
..++++|..+.|+....+|+||+|+.|++|.++|.+.+.| ++|+.+..+.|.|+. |+..-++.
T Consensus 186 ~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~-----~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp 260 (656)
T KOG4426|consen 186 SVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSG-----VDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSP 260 (656)
T ss_pred ceeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcC-----cceEeeccccchHHHHHHHHHHHHHhCCchhccCC
Confidence 4478999999999999999999999999999999999999 999999999987764 33322221
Q ss_pred ----------------------------------CCC------HHHHHHHHHHHHHHHHhhcCccccccccCCChhhHHH
Q psy2393 78 ----------------------------------GMT------PKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDL 117 (576)
Q Consensus 78 ----------------------------------g~~------~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~ 117 (576)
|-. ...+|+-..+++....++|.|+..- .-+..|...
T Consensus 261 ~IgDLQvFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e---~GESFYq~~ 337 (656)
T KOG4426|consen 261 PIGDLQVFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKE---RGESFYQDR 337 (656)
T ss_pred CchhHHHHHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHhh---cchhhhhhH
Confidence 111 1235777888999999999997532 124468888
Q ss_pred HHHHHHHHHhcCCcEEecceee-eecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccE
Q psy2393 118 VQKIYDTLYNKAKLIINKKINQ-FFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPI 196 (576)
Q Consensus 118 v~~~~~~L~~~~g~iy~~~~~~-~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~ 196 (576)
+.++++.|. .+|++.+.++.. .|-+. |+-|..
T Consensus 338 m~~vveel~-~kglvee~~Gr~i~f~~g----------------------------------------------~~IPLt 370 (656)
T KOG4426|consen 338 MAEVVEELK-SKGLVEEDDGRRIMFPEG----------------------------------------------CDIPLT 370 (656)
T ss_pred HHHHHHHHh-cCCceeecCCceEeccCC----------------------------------------------CCcceE
Confidence 999999999 999999877433 23111 111222
Q ss_pred Eeeec-ceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeecc
Q psy2393 197 IKSSK-HFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAP 275 (576)
Q Consensus 197 ~~~~~-~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~ 275 (576)
...++ .+-.+. +++... | - ... +...||
T Consensus 371 vVKSDGGftYdt--sDlaAl---~------------y---Rl~---EEkadw---------------------------- 399 (656)
T KOG4426|consen 371 VVKSDGGFTYDT--SDLAAL---K------------Y---RLN---EEKADW---------------------------- 399 (656)
T ss_pred EEecCCCccccc--chHHHH---H------------H---HHH---HhhcCe----------------------------
Confidence 22211 111111 111100 0 0 000 011222
Q ss_pred cchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCc-chhHhHHHHHHHhcCC---CCCc-EEeeeccEE
Q psy2393 276 IGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIF-YFHILFWPAILKFSGR---KLPN-NIFVHGFMT 350 (576)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~-~fh~~~~~a~l~~~~~---~~p~-~~~~~g~v~ 350 (576)
+|+|....|. .|..++-.| ...|+ ..|+ .++..|.|+
T Consensus 400 ------------------------------------iIYVvD~GQs~Hf~t~fkAa--r~~gwld~~~~RV~HvgFGlVL 441 (656)
T KOG4426|consen 400 ------------------------------------IIYVVDSGQSQHFNTIFKAA--RKAGWLDPTYPRVEHVGFGLVL 441 (656)
T ss_pred ------------------------------------EEEEeeCchhHHHHHHHHHH--HHcCccCCCccceeeeeeeeEE
Confidence 2455433332 233333222 22332 2333 556667777
Q ss_pred e-CCccccccCCCccChhHHhhcC----------------------------CChhHHHHHHHhhCCCCCCCcccchhhH
Q psy2393 351 I-NGKKMSKSNKIGISPLYYLKIG----------------------------MNPEWLRYYIASKLNNKIEDIDFNSQSF 401 (576)
Q Consensus 351 ~-~g~KMSKS~gn~i~~~dll~~g----------------------------~g~d~lR~~l~~~~~~~~~d~~fs~~~~ 401 (576)
. +|+|+-++.|.+|-+.||++.| ++-..+.|.-+++ +...|..||.+.+
T Consensus 442 GeD~KkFkTRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~h--nR~~dY~FSFDkM 519 (656)
T KOG4426|consen 442 GEDKKKFKTRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLSH--NRITDYIFSFDKM 519 (656)
T ss_pred ccCcccccccccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcchhHhhhcc--ccccceeeeHHHH
Confidence 6 7789999999999999998631 3334577777776 6667889999998
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHcCC------------CCCCcccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy2393 402 ISCVNSDLIGKYINIASRSSSFIEKYFKG------------YLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYI 469 (576)
Q Consensus 402 ~~~~~~~~~~~~~n~~~R~~~~~~~~~~~------------~~~~~~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~ 469 (576)
++-. ++...++-+++.|+++++++.... .++...+.+ ..|-..|.++.+.+.++.+++-+|..+.+
T Consensus 520 L~Dr-GnTAvYLLYa~tRIcSI~rksg~d~~~l~~~lkkT~ki~LDH~~E-~kLg~~lLkf~e~v~~~~~~L~lh~lC~y 597 (656)
T KOG4426|consen 520 LEDR-GNTAVYLLYAYTRICSIARKSGKDNVDLIKELKKTGKIALDHEKE-WKLGKHLLKFAEIVEKALDSLFLHVLCDY 597 (656)
T ss_pred hhcc-CcceehhHHHHHHHHHHHHHcCCchhhHHHHHHhcCccccCCHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 7753 667888899999999999875221 111111113 56778899999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCc
Q psy2393 470 VIEQTNFINIFFDQNKP 486 (576)
Q Consensus 470 l~~~~~~~n~y~~~~k~ 486 (576)
+++++..+..||+.|..
T Consensus 598 ~y~l~t~Ft~FY~~Cyv 614 (656)
T KOG4426|consen 598 LYELATLFTEFYDSCYV 614 (656)
T ss_pred HHHHHHHHHHHhhccEE
Confidence 99999999999999864
No 73
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.71 E-value=9.4e-16 Score=163.54 Aligned_cols=286 Identities=16% Similarity=0.140 Sum_probs=161.4
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++-.+|+|||+|||||||++++.+.++| .+.| .++.-+||.+.+|.. ....+.+.|.+
T Consensus 102 V~tRFaPsPtG~LHIGharaalln~~~Ar--~~~G--------~~iLRidDTDpk~~R-----------~~~e~~~~I~e 160 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAAILNDEYAK--MYGG--------KFILRFEDTDPRTKR-----------PDPEAYDMILE 160 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCC--------EEEEeEccCCCCccc-----------chHHHHHHHHH
Confidence 67778999999999999999999999999 4444 555556666553311 12344589999
Q ss_pred HHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCccccC
Q psy2393 95 YLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECC 174 (576)
Q Consensus 95 ~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~c 174 (576)
+|++||+.||..+..+ .+.+...+...+|. ++|++|.-. |...+ +... ...|.-|
T Consensus 161 dL~wLGl~wD~~~~qS--dr~~~y~~~a~~Li-~~G~AY~C~-----cs~ee--~~~~------------r~~g~~~--- 215 (567)
T PRK04156 161 DLKWLGVKWDEVVIQS--DRLEIYYEYARKLI-EMGGAYVCT-----CDPEE--FKEL------------RDAGKPC--- 215 (567)
T ss_pred HHHHcCCCCCCccCcc--cCHHHHHHHHHHHH-HcCCCccCC-----CCHHH--HHHH------------HhcCCCC---
Confidence 9999999999777665 67888889999999 999999621 11100 0000 0000000
Q ss_pred CCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCC--ChhHHHHHHHHHhhcCCCCCcccccC
Q psy2393 175 SSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRL--QPEIVNKIKEWLEKDNKFNDWDISRD 252 (576)
Q Consensus 175 g~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~dw~isR~ 252 (576)
.| |.-+ . .+-.+...+. .+...- +...+-.+ +.-..+...+||.+-|.
T Consensus 216 ------------~~-R~~~-------------~--ee~l~~~e~m-~~G~~~~g~~vlR~k~-d~~~~n~~~rD~v~~R~ 265 (567)
T PRK04156 216 ------------PH-RDKS-------------P--EENLELWEKM-LDGEYKEGEAVVRVKT-DLEHPNPSVRDWVAFRI 265 (567)
T ss_pred ------------CC-cCCC-------------H--HHHHHHHHHh-hcCccccCCeEEEEEC-cccCCCCCccccEEEEE
Confidence 00 0000 0 0000000111 100000 00000000 00000123467766664
Q ss_pred CCCCCeecCCC-CCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEe-eecCcchhHhHHHH
Q psy2393 253 APYFGIKIPNT-LEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFI-GKDIFYFHILFWPA 330 (576)
Q Consensus 253 ~~~WG~~iP~~-~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~-G~D~~~fh~~~~~a 330 (576)
. +.+-|.. .+.++|.-.+ ++. -.+ |....+.|++ |.|+.- +...+..
T Consensus 266 ~---~~~h~~~Gd~~~i~PtY~-----fA~------------------~VD----D~l~GITHViRg~d~~~-~t~~Q~~ 314 (567)
T PRK04156 266 V---KTPHPRVGDKYRVWPTYN-----FAV------------------AVD----DHLLGVTHVLRGKDHID-NTEKQRY 314 (567)
T ss_pred c---CCCccccCCCeEEEEEec-----cCc------------------eee----ecCCCCCeEEccccccc-ChHHHHH
Confidence 3 2222211 1112211110 110 001 1112346666 777762 2223333
Q ss_pred HHHhcCCCCCcEEeeeccEEeCCccccccC-------C--------CccChhHHhhcCCChhHHHHHHHhhCCCCCCCcc
Q psy2393 331 ILKFSGRKLPNNIFVHGFMTINGKKMSKSN-------K--------IGISPLYYLKIGMNPEWLRYYIASKLNNKIEDID 395 (576)
Q Consensus 331 ~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~-------g--------n~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~ 395 (576)
++.++|.+.| .+.|+++++.+|.|||||+ | +..++..+.+.|+.|+++|.|++..+. ...+..
T Consensus 315 l~~~Lg~~~P-~~~H~~~L~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~-s~~~~~ 392 (567)
T PRK04156 315 IYDYFGWEYP-ETIHYGRLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGV-KETDAT 392 (567)
T ss_pred HHHHcCCCCc-eEEEcceecCCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCC-CCCCcc
Confidence 5677787654 5688999999999999998 4 447889999999999999999997643 446789
Q ss_pred cchhhHhhhhhHHHH
Q psy2393 396 FNSQSFISCVNSDLI 410 (576)
Q Consensus 396 fs~~~~~~~~~~~~~ 410 (576)
|+++.+.+. |++.+
T Consensus 393 ~~~~~L~~~-nr~~l 406 (567)
T PRK04156 393 ISWENLYAI-NRKLI 406 (567)
T ss_pred cCHHHHHHH-HHHHH
Confidence 999976554 34433
No 74
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.71 E-value=2.6e-16 Score=139.08 Aligned_cols=125 Identities=30% Similarity=0.490 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCCCc--cc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q psy2393 406 NSDLIGKYINIASRSSSFIEKYFKGYLNMK--WV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFD 482 (576)
Q Consensus 406 ~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~--~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~ 482 (576)
|+++.++++|+++|+.+++.+.+++.+|.. +. .| .|+++.+..+.+++.++|++|+++.+++.+++|++.+|+|++
T Consensus 2 n~~l~~~~gnll~r~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~n~y~~ 80 (129)
T cd07957 2 NSELANNLGNLVNRTLNMASKYFGGVVPEFGGLTEED-EELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANKYID 80 (129)
T ss_pred cHHHHhhHhhHHHHHHHHHHHHcCCcCCCCCCCCccc-HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhc
Confidence 467889999999999999998887766642 22 26 999999999999999999999999999999999999999999
Q ss_pred hcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHc
Q psy2393 483 QNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFL 532 (576)
Q Consensus 483 ~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L 532 (576)
..+||.+.+++ ...+++.+++++.++++.++++|+||||++||++|+.|
T Consensus 81 ~~kpw~~~~~~-~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 81 ETAPWKLAKEE-DPERLATVLYVLLELLRILAILLSPFMPETAEKILDQL 129 (129)
T ss_pred cCCCHHHHccC-CHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHhC
Confidence 99999876542 23456778889999999999999999999999999875
No 75
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.66 E-value=3e-15 Score=143.16 Aligned_cols=96 Identities=19% Similarity=0.135 Sum_probs=77.3
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++-.+|+|||.+||||++++++.++++| + +++.++..+||.+.+.+ + ..+.+.+.|.+
T Consensus 2 v~~RfaPsPtG~lHiG~~rtal~~~l~Ar-----~-----~~G~~ilRieDtD~~r~--------~---~~~~~~~~i~~ 60 (240)
T cd09287 2 VVMRFAPNPNGPLHLGHARAAILNGEYAK-----M-----YGGKFILRFDDTDPRTK--------R---PDPEAYDMIPE 60 (240)
T ss_pred ceEeCCCCCCCCccHHHHHHHHHHHHHHH-----H-----cCCEEEEeeCcCCCCcc--------c---chHHHHHHHHH
Confidence 35667899999999999999999999999 4 55677777888776643 1 22444556999
Q ss_pred HHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|++||+.||..+..+ ++.+..++...+|. ++|.+|.
T Consensus 61 dL~wLGl~~d~~~~qS--~r~~~y~~~~~~Li-~~G~aY~ 97 (240)
T cd09287 61 DLEWLGVKWDEVVIAS--DRIELYYEYARKLI-EMGGAYV 97 (240)
T ss_pred HHHHcCCCCCCccchh--ccHHHHHHHHHHHH-HcCCccc
Confidence 9999999999665544 67888888999999 9999996
No 76
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=99.66 E-value=4.6e-15 Score=154.63 Aligned_cols=94 Identities=16% Similarity=0.183 Sum_probs=76.2
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|+|||.|||||+|+++....++| +..| .-++++-.+|- ....+.+.+.|.+
T Consensus 3 vr~RFAPSPTG~lHiG~artAL~n~l~Ar--~~gG-----~fiLRIEDTD~----------------~Rs~~~~~~~I~e 59 (445)
T PRK12558 3 VITRFAPSPTGYLHVGNARTALLNWLYAR--KHGG-----KFILRIDDTDL----------------ERSKQEYADAIAE 59 (445)
T ss_pred eeEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEEeccCCc----------------ccchHHHHHHHHH
Confidence 45666899999999999999999999998 6667 66666655542 1233678899999
Q ss_pred HHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|++|||+||.+++.+ +....+++++.+|. ++|++|.
T Consensus 60 ~L~wLGI~~De~y~QS--er~~~y~~~~e~L~-e~G~AY~ 96 (445)
T PRK12558 60 DLKWLGINWDRTFRQS--DRFDRYDEAAEKLK-AAGRLYP 96 (445)
T ss_pred HHHHcCCCCCccccHH--HHHHHHHHHHHHHH-HCCCEEE
Confidence 9999999999877655 44568899999999 9999986
No 77
>KOG1195|consensus
Probab=99.64 E-value=1e-14 Score=147.94 Aligned_cols=361 Identities=15% Similarity=0.097 Sum_probs=226.9
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHH---HcC-------
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAE---KAG------- 78 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~---~~g------- 78 (576)
..+++++|..+.|+.+.+.|+||+|+.+++-+++...+..| ++|..+....|.|..+-..|. +.|
T Consensus 107 ~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G-----~~Vtr~NYLGDWGkQFgll~~g~~~~g~e~~L~~ 181 (567)
T KOG1195|consen 107 GSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALG-----WEVTRVNYLGDWGKQFGLLALGFQLYGDEEELQL 181 (567)
T ss_pred ccCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhC-----CceeehhhhhHHHHHhhHHhccHHhhCchhhhcc
Confidence 34689999999999999999999999999999999999999 999998888887775543331 001
Q ss_pred --------------------CC----------------------HHHHHHHHHHHHHHHHhhcCccccccccCCChhhHH
Q psy2393 79 --------------------MT----------------------PKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENID 116 (576)
Q Consensus 79 --------------------~~----------------------~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~ 116 (576)
.+ .+.+-+..++...+..++|||.||.+...+. -+.+
T Consensus 182 ~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~FD~y~gESq-v~~e 260 (567)
T KOG1195|consen 182 NPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVKFDEYSGESQ-VSNE 260 (567)
T ss_pred chHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhceeeeeccchHH-HHHH
Confidence 00 0112223355667788899999998876543 4677
Q ss_pred HHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccE
Q psy2393 117 LVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPI 196 (576)
Q Consensus 117 ~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~ 196 (576)
..+.+...+. .+|++...++...+
T Consensus 261 ~~~~~~d~~r-s~~l~~e~dG~~vi------------------------------------------------------- 284 (567)
T KOG1195|consen 261 KMQEALDLLR-SANLTEEIDGTIVI------------------------------------------------------- 284 (567)
T ss_pred HHHHHHHHHH-hcCCcccCCCcEEE-------------------------------------------------------
Confidence 7888888888 87765554433322
Q ss_pred EeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeeccc
Q psy2393 197 IKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPI 276 (576)
Q Consensus 197 ~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~ 276 (576)
+| +++-+.+. .++.+. .++.++|
T Consensus 285 ---------dL--~~~~~~~~-----------------------------~~~V~k----------sdgttLY------- 307 (567)
T KOG1195|consen 285 ---------DL--SKIDKKAG-----------------------------KAVVQK----------SDGTTLY------- 307 (567)
T ss_pred ---------Ee--cccCcccc-----------------------------eEEEEc----------CCCceeh-------
Confidence 22 11000000 000000 0111121
Q ss_pred chhhhc-chhhhhCCCCCcccccccccccccCCCcceEEEeeecCc-chhHhHHHHHHHhcCCCCC--cEEeeeccEEeC
Q psy2393 277 GYLASL-KNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIF-YFHILFWPAILKFSGRKLP--NNIFVHGFMTIN 352 (576)
Q Consensus 277 ~~~~~~-~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~-~fh~~~~~a~l~~~~~~~p--~~~~~~g~v~~~ 352 (576)
++.- +...... +.|. ..+++++....|- .|-..+ -++..+|.+.. -.++..|.|
T Consensus 308 --ltRdiaaal~Rl---------~~y~------fdr~iYVvd~~Q~~hf~~lf--~ilk~mg~~~a~~~qHV~~G~v--- 365 (567)
T KOG1195|consen 308 --LTRDIAAALDRL---------EKYS------FDRLIYVVDSQQKDHFCQLF--EILKKMGFDWAKKLQHVNFGRV--- 365 (567)
T ss_pred --HHHHHHHHHHHH---------HhcC------cceEEEEechHHHHHHHHHH--HHHHHhCchhhhhcceeccccc---
Confidence 1110 0000000 1111 1235777765443 222222 25677787643 355555554
Q ss_pred CccccccCCCccChhHHhhcC---------------------------CChhHHHHHHHhhCCCCCCCcccchhhHhhhh
Q psy2393 353 GKKMSKSNKIGISPLYYLKIG---------------------------MNPEWLRYYIASKLNNKIEDIDFNSQSFISCV 405 (576)
Q Consensus 353 g~KMSKS~gn~i~~~dll~~g---------------------------~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~ 405 (576)
.-||+++|+++..+|+++++ .|..++..-.+.. -...+..|+|+++.+.
T Consensus 366 -~GmsTRkG~~~fl~dil~e~re~m~e~M~s~~t~~~~~~~~~~vad~lg~sAviv~d~k~--rr~s~yeF~w~~~~~~- 441 (567)
T KOG1195|consen 366 -QGMSTRKGKVVFLDDILEEAREQMLEVMASNKTKPVQMANPDEVADRLGLSAVIVQDFKG--RRISNYEFSWNRVLSF- 441 (567)
T ss_pred -ccccccCCceeeHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHhhHHHHHHHHHH--HhcccceEEhhhhhee-
Confidence 36999999999999988620 6677777766654 3446779999988766
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCCC------c-cc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2393 406 NSDLIGKYINIASRSSSFIEKYFKGYLNM------K-WV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFI 477 (576)
Q Consensus 406 ~~~~~~~~~n~~~R~~~~~~~~~~~~~~~------~-~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~ 477 (576)
+++...++++++.|+.++.++..+-..+. . +. ++...|+..|..+++.+..+++.++++.++.||+.++..+
T Consensus 442 ~gdtg~yLQY~HsRL~Slerk~~~~~~~~l~~~d~~~l~ep~~~~Lv~~L~~fp~vve~s~e~lE~~~lV~YL~~La~a~ 521 (567)
T KOG1195|consen 442 EGDTGPYLQYTHSRLRSLERKFSDVTLDDLDEIDFSLLTEPDALLLVRLLLQFPEVVEKSMEQLEPCTLVTYLFKLAHAV 521 (567)
T ss_pred cCCchHHHHHHHHHHHHHHHhccccCchhhhccchhhcCChhHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 47778899999999999988753221111 1 11 1225688999999999999999999999999999999999
Q ss_pred HHhhhhcCccccccCcccHHH---HHHHHHHHHHHHHHHHH
Q psy2393 478 NIFFDQNKPWKLAKNNIYHEK---LHKISSRLLEAFRILTI 515 (576)
Q Consensus 478 n~y~~~~k~~~~~~~~~~~~~---~~~v~~~l~~~l~~l~~ 515 (576)
++.+...+......+ ....+ ..++..+|.+.+++|++
T Consensus 522 s~~yk~l~V~d~~~e-ia~aRL~Lf~AvRqVL~ngm~lLGi 561 (567)
T KOG1195|consen 522 SSAYKILWVKDSPME-IALARLLLFSAVRQVLNNGMRLLGI 561 (567)
T ss_pred HhHHhheeecCCcHH-HHHHHHHHHHHHHHHHHhHHHHhCC
Confidence 988877553211111 11111 23444556666666553
No 78
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=99.62 E-value=2.7e-13 Score=144.18 Aligned_cols=93 Identities=19% Similarity=0.200 Sum_probs=73.2
Q ss_pred EEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2393 16 VTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKY 95 (576)
Q Consensus 16 v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 95 (576)
++--+|+|||.|||||+|++++...++| ...| .-++++-.+|- ....+.+.+.|.++
T Consensus 3 ~~RfAPsPtG~lHiG~~rtal~n~l~Ar--~~~G-----~~iLRieDtD~----------------~R~~~~~~~~i~~~ 59 (470)
T TIGR00464 3 RTRFAPSPTGYLHIGGARTALFNYLFAK--HTGG-----EFILRIEDTDL----------------ERNIEEAEEAILEG 59 (470)
T ss_pred eEeeCCCCCCcccHHHHHHHHHHHHHHH--HcCC-----EEEEEeCcCCC----------------ccCChHHHHHHHHH
Confidence 4556799999999999999999999999 6667 66677655543 12335677889999
Q ss_pred HhhcCcccc-ccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 96 LDGFYIKFD-NWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 96 l~~lgi~~d-~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
|++||++|| -.|..+ ++.+..+++..+|. ++|.+|.
T Consensus 60 L~wlGl~~de~~~~QS--~r~~~y~~~~~~L~-~~g~aY~ 96 (470)
T TIGR00464 60 LKWLGISWDEGPYYQS--QRLDIYKKYAKELL-EEGLAYR 96 (470)
T ss_pred HHHCCCCCCCCeeehh--CCHHHHHHHHHHHH-HcCCEEe
Confidence 999999999 555444 45666778889999 9999996
No 79
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=99.61 E-value=2e-14 Score=149.19 Aligned_cols=276 Identities=17% Similarity=0.156 Sum_probs=156.2
Q ss_pred CCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q psy2393 19 ALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDG 98 (576)
Q Consensus 19 ~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 98 (576)
-.|+|||+|||||+|++++...++| ++.| .-++++-.+|.. ...+.+.+.|.++|++
T Consensus 4 FAPSPTG~LHiG~artAL~n~l~Ar--~~gG-----~fiLRiEDTD~~----------------R~~~e~~~~I~~~L~W 60 (433)
T PRK12410 4 FAPSPTGDMHIGNLRAAIFNYIVAK--QQNE-----DFLIRIEDTDKE----------------RNIEGKDKEILEILNL 60 (433)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHH--HcCC-----EEEEEeCcCCCC----------------cCChHHHHHHHHHHHH
Confidence 3699999999999999999999999 7778 777777666541 2235667899999999
Q ss_pred cCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcC
Q psy2393 99 FYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIY 178 (576)
Q Consensus 99 lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~ 178 (576)
||++||-.|..+ ++.+.-.++..+|. ++|.+|. -||... -+...- ..-...+....|...|- ..
T Consensus 61 lGl~wDe~y~QS--eR~~~Y~~~a~~Li-~~G~AY~-----C~cs~e--el~~~r--~~~~~~g~~~~Y~g~cr----~l 124 (433)
T PRK12410 61 FGISWDKLVYQS--ENLKFHRQMAEKLL-SEKKAFA-----CFCSEE--ELEAKK--EKAKNEKKPYRYDGTCE----NL 124 (433)
T ss_pred cCCCCCCCeehh--ccHHHHHHHHHHHH-HcCCeee-----ecCCHH--HHHHHH--HHHhhcCCCCCCCchhh----CC
Confidence 999999766554 56677788999999 9999985 112111 000000 00000000000111110 00
Q ss_pred CCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccccCCCCCCe
Q psy2393 179 TPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGI 258 (576)
Q Consensus 179 ~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~ 258 (576)
+.++. ...|.+.. |-|++ +. .... |...++..+. +-. ..+.|+.|-|.. |.
T Consensus 125 ~~~e~-----~~~g~~~~------iR~k~--p~---~~~~-------f~D~v~G~i~-~~~--~~~~D~Vi~R~D---g~ 175 (433)
T PRK12410 125 EDDEV-----LNCNKPFV------VRLKK--PN---HTMS-------FTDAIKGEVS-FEP--DEIDSFVILRAD---KT 175 (433)
T ss_pred CHhHH-----HhcCCCeE------EEEEc--CC---Ccee-------eeeccceeEE-ecc--ccCCCeEEEcCC---CC
Confidence 10000 00111111 11222 10 0000 0000000000 000 234566666655 33
Q ss_pred ecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEe-eecCcchhHhHHHHHHHhcCC
Q psy2393 259 KIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFI-GKDIFYFHILFWPAILKFSGR 337 (576)
Q Consensus 259 ~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~-G~D~~~fh~~~~~a~l~~~~~ 337 (576)
|.= .+-+-.| |....+.||+ |.|++.. +..+..+..++|.
T Consensus 176 PtY-----~fA~vVD---------------------------------D~~mgIThViRG~d~l~~-tp~Qi~Ly~aLg~ 216 (433)
T PRK12410 176 PTY-----NFACAVD---------------------------------DMLYDISLIIRGEDHVSN-TPKQILIREALGY 216 (433)
T ss_pred ccc-----cccchhc---------------------------------hhhcCCCEEEechhhhhC-cHHHHHHHHHcCC
Confidence 210 0000011 1123457888 9999732 2233346788898
Q ss_pred CCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhh
Q psy2393 338 KLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFIS 403 (576)
Q Consensus 338 ~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~ 403 (576)
+.|..+.|+.+++. +|+||||+.| ..++.++.+.||.|++++-|++..+.... +-.|+.+++.+
T Consensus 217 ~~pp~f~Hlpli~~~~g~KLSKR~~-~~~v~~~r~~G~~PeAi~n~l~~lG~~~~-~e~~~~~eli~ 281 (433)
T PRK12410 217 NKEITYAHLPIILNEEGKKMSKRDN-ASSVKWLLEQGFLPSAIANYLILLGNKTP-KEIFTLEEAIE 281 (433)
T ss_pred CCCCeEEEeeeeeCCCCCeeecccC-hhhHHHHHHCCCCHHHHHHHHHHhCCCCc-ccccCHHHHHH
Confidence 87767888888877 9999999988 57899999999999999999998754322 22455555443
No 80
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=99.61 E-value=3.5e-14 Score=149.72 Aligned_cols=95 Identities=20% Similarity=0.164 Sum_probs=78.6
Q ss_pred EEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy2393 14 IFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRK 93 (576)
Q Consensus 14 ~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 93 (576)
-+++--+|.|||.||||||+++++...++| .+.| .-++++-.+|- ..-...+.+.|.
T Consensus 11 ~v~tRFAPsPtG~LHiGharaAlln~l~Ar--~~gG-----~~iLRiEDTDp----------------~R~~~e~~~~I~ 67 (523)
T PLN03233 11 QIVTRFPPEPSGYLHIGHAKAALLNDYYAR--RYKG-----RLILRFDDTNP----------------SKEKAEFEESII 67 (523)
T ss_pred eEEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEEECCCCC----------------CccchHHHHHHH
Confidence 378888999999999999999999999998 5678 66666655543 223356788999
Q ss_pred HHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 94 KYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 94 ~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
++|+.||+.||..+.++ .+-+...+...+|. ++|.+|.
T Consensus 68 ~dL~WLGl~wD~~~~qS--dr~~~y~~~a~~Li-~~G~AY~ 105 (523)
T PLN03233 68 EDLGKIEIKPDSVSFTS--DYFEPIRCYAIILI-EEGLAYM 105 (523)
T ss_pred HHHHHhCCCCCCCcccc--ccHHHHHHHHHHHH-HcCCeEe
Confidence 99999999999776655 57788888999999 9999996
No 81
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.58 E-value=6.3e-14 Score=147.73 Aligned_cols=280 Identities=16% Similarity=0.157 Sum_probs=158.3
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--.|+|||.|||||+|++++...++| +..| .-++++-.+|- ....+.+.+.+.+
T Consensus 5 vrtRFAPSPTG~lHiG~artAL~n~l~Ar--~~gG-----~fiLRIEDTD~----------------~R~~~~~~~~i~~ 61 (513)
T PRK14895 5 VITRFAPSPTGFLHIGSARTALFNYLFAR--HHNG-----KFLLRIEDTDK----------------ERSTKEAVEAIFS 61 (513)
T ss_pred eeEeeCCCCCCCccHHHHHHHHHHHHHHH--HcCC-----EEEEEECCCCc----------------cccChHHHHHHHH
Confidence 45666899999999999999999999999 6677 66777655542 2334567889999
Q ss_pred HHhhcCcccc-ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCcccc
Q psy2393 95 YLDGFYIKFD-NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCEC 173 (576)
Q Consensus 95 ~l~~lgi~~d-~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~ 173 (576)
+|++||++|| -.|+.+ +..+...+...+|. ++|.+|. -||... -+...- ..-+.|+....|...|..
T Consensus 62 ~L~WLGl~wDe~py~QS--eR~~~Y~~~a~~Li-~~G~AY~-----CfCt~e--el~~~r--~~~~~~~~~~~Y~~~cr~ 129 (513)
T PRK14895 62 GLKWLGLDWNGEVIFQS--KRNNLYKEAALKLL-QNGKAYY-----CFTRQE--EIERQR--QQALENKQHFIFNSEWRD 129 (513)
T ss_pred HHHHcCCCCCCCceeEe--CcHHHHHHHHHHHH-HcCCeEE-----ecCcHH--HHHHHH--HhhhccCCCCCCChhhcc
Confidence 9999999999 445444 45677788888999 9999996 222221 110000 000011111112222210
Q ss_pred CCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccccCC
Q psy2393 174 CSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDA 253 (576)
Q Consensus 174 cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~isR~~ 253 (576)
.++++.. .+.+.. |=|++ +.- ....|...++..+. +-. ..+.|+.|-|..
T Consensus 130 ----~~~~~~~------~~~~~~------iR~k~--p~~---------~~~~~~D~v~G~~~-~~~--~~~~D~Vi~RsD 179 (513)
T PRK14895 130 ----KDPSIYP------TDIKPV------IRLKT--PRE---------GSITIHDTLQGEVV-IEN--SHIDDMVLLRAD 179 (513)
T ss_pred ----cChhhhh------cCCCee------EEEEc--CCC---------CceEEEeeccccee-ccc--ccCCCcEEEEeC
Confidence 1111000 011111 11222 100 00000000000000 000 234577777765
Q ss_pred CCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEe-eecCcchhHhHHHHHH
Q psy2393 254 PYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFI-GKDIFYFHILFWPAIL 332 (576)
Q Consensus 254 ~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~-G~D~~~fh~~~~~a~l 332 (576)
|.|. |..+. .. ++. ...+.|++ |.||+. |+..+..++
T Consensus 180 ---G~pt-----------------Y~~a~--vV---------------DD~----~m~ithVIRG~d~~~-~t~~q~~l~ 217 (513)
T PRK14895 180 ---GTAT-----------------YMLAV--VV---------------DDH----DMGITHIIRGDDHLT-NAARQLAIY 217 (513)
T ss_pred ---CCcc-----------------hhhHH--HH---------------HHH----hcCCCEEEECchHhh-hHHHHHHHH
Confidence 4432 22110 00 000 01235555 999973 344445678
Q ss_pred HhcCCCCCcEEeeeccEE-eCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhh
Q psy2393 333 KFSGRKLPNNIFVHGFMT-INGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFIS 403 (576)
Q Consensus 333 ~~~~~~~p~~~~~~g~v~-~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~ 403 (576)
.++|.+.| .+.|+.+|. .+|+||||+.|. ..+.++.+.||.|++++-|++..+.....+-.|+.+++.+
T Consensus 218 ~aLG~~~p-~~~H~plv~~~~g~KLSKR~g~-~~i~~~r~~G~~Peai~n~la~LG~s~~~~e~~~~~el~~ 287 (513)
T PRK14895 218 QAFGYAVP-SMTHIPLIHGADGAKLSKRHGA-LGIEAYKDMGYLPESLCNYLLRLGWSHGDDEIISMTQAID 287 (513)
T ss_pred HHcCCCCC-eEEEEEeEEcCCCCccccccCc-hhHHHHHHCCCCHHHHHHHHHHhCCCCCCcCCCCHHHHHh
Confidence 88997765 678888888 499999999985 5889999999999999999996533222222466665543
No 82
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.54 E-value=1e-13 Score=120.20 Aligned_cols=112 Identities=20% Similarity=0.177 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCC-ccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHhhhh
Q psy2393 407 SDLIGKYINIASRSSSFIEKYFKGYLNM-KWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIV-IEQTNFINIFFDQ 483 (576)
Q Consensus 407 ~~~~~~~~n~~~R~~~~~~~~~~~~~~~-~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l-~~~~~~~n~y~~~ 483 (576)
.++++.++|+++|+.+++.+..++..|. ... .| +++++.+.++.+.+.++|++|+|+.+++.+ +++.+.+|.|++.
T Consensus 3 ~~~~~~~~~~l~R~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~~~~~~Y~~~ 81 (117)
T cd07959 3 EEEANSAILRLERFYELAEELIETEGELEELTFID-RWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDLDWYRER 81 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccccchhH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888999999999998865544432 222 25 999999999999999999999999999997 9999999999998
Q ss_pred cCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHc
Q psy2393 484 NKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFL 532 (576)
Q Consensus 484 ~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L 532 (576)
.+|| ....++.++++.++++|+||+||+||++|+.|
T Consensus 82 ~~~~-------------~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 82 GGAG-------------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred hCcc-------------chHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 8876 01245668999999999999999999999875
No 83
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.54 E-value=2e-13 Score=145.19 Aligned_cols=94 Identities=17% Similarity=0.176 Sum_probs=75.7
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|+|||.|||||+|++++...++| +..| .-++++-.+|-- ...+.+.+.|.+
T Consensus 5 v~~RfAPSPtG~lHiG~~rtal~n~l~Ar--~~~G-----~fiLRieDtD~~----------------R~~~~~~~~i~~ 61 (476)
T PRK01406 5 VRTRFAPSPTGYLHIGGARTALFNWLFAR--HHGG-----KFILRIEDTDQE----------------RSTEEAEEAILE 61 (476)
T ss_pred eeEEeCCCCCCcccHHHHHHHHHHHHHHH--HcCC-----EEEEEeCcCCCC----------------CCChHHHHHHHH
Confidence 56777899999999999999999999999 6677 767777655531 234667889999
Q ss_pred HHhhcCcccccc--------ccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDNW--------YSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~~--------~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|++||++||-- |+.+ ++.+..+++..+|. ++|.+|.
T Consensus 62 ~L~wlGl~~De~p~~~~~gpy~QS--~r~~~y~~~~~~L~-~~g~aY~ 106 (476)
T PRK01406 62 GLKWLGLDWDEGPDGGPYGPYRQS--ERLDIYKEYAEQLL-EEGKAYY 106 (476)
T ss_pred HHHHCCCCCCCCCccCCCCceehh--cCHHHHHHHHHHHH-HcCCeee
Confidence 999999999943 4433 56678888899999 9999996
No 84
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=99.52 E-value=1e-12 Score=140.29 Aligned_cols=96 Identities=17% Similarity=0.122 Sum_probs=77.2
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 92 (576)
.-+++--||+|||+||||||+++++.+.++| .+.| .-++.+ ||...+ .-...+.+.|
T Consensus 92 ~~vvtRFaPsPtG~LHiGharaalln~~~Ar--~~~G-----~~iLRi---dDTDp~-------------R~~~e~~~~I 148 (560)
T TIGR00463 92 GEVVMRFAPNPSGPLHIGHARAAILNQYFAK--KYKG-----KLIIRF---DDTDPR-------------RVKPEAYDMI 148 (560)
T ss_pred CeeEEEeCCCCCCCccHHHHHHHHHHHHHHH--hcCC-----EEEEEe---CcCCcc-------------cccHHHHHHH
Confidence 3488899999999999999999999999997 5556 444444 444332 1123478899
Q ss_pred HHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 93 KKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 93 ~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
.++|+.||+.||..+.++ +|.+...++..+|. ++|.+|.
T Consensus 149 ~edL~wLGi~~d~~~~qS--d~~~~y~~~a~~Li-~~G~AY~ 187 (560)
T TIGR00463 149 LEDLDWLGVKGDEVVYQS--DRIEEYYDYCRKLI-EMGKAYV 187 (560)
T ss_pred HHHHHHcCCCCCcccccc--ccHHHHHHHHHHHH-HcCCcee
Confidence 999999999999877666 68888999999999 9999996
No 85
>PLN02627 glutamyl-tRNA synthetase
Probab=99.52 E-value=6.7e-13 Score=140.18 Aligned_cols=94 Identities=15% Similarity=0.175 Sum_probs=75.1
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--.|+|||.|||||+|++++...++| +..| .-++++-.+|-. .....+.+.|.+
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar--~~gG-----~fiLRIEDTD~~----------------R~~~e~~~~I~~ 102 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALFNYLFAR--SKGG-----KFVLRIEDTDLA----------------RSTKESEEAVLR 102 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HhCC-----EEEEEeCcCCCC----------------CCChHHHHHHHH
Confidence 66677889999999999999999999999 7778 777777665531 233567789999
Q ss_pred HHhhcCcccccc---------ccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDNW---------YSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~~---------~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|++||++||-- |+.+ ++.+...++..+|. ++|.+|.
T Consensus 103 ~L~WLGl~wDegp~~gg~~gpy~QS--eR~~~Y~~~a~~Li-~~G~AY~ 148 (535)
T PLN02627 103 DLKWLGLDWDEGPDVGGEYGPYRQS--ERNAIYKQYAEKLL-ESGHVYP 148 (535)
T ss_pred HHHHcCCCCCcCcccCCCCCCeeee--ccHHHHHHHHHHHH-HcCCeee
Confidence 999999999842 3333 56677788888999 9999996
No 86
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=2.1e-13 Score=143.13 Aligned_cols=94 Identities=18% Similarity=0.189 Sum_probs=78.5
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|+|||+|||||||+++....+|| .+.| .-++.+-.||- +.-...+.+.|.+
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar--~~~G-----~fiLRiEDTD~----------------~R~~~e~~~~I~~ 66 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYAR--KYGG-----KFILRIEDTDP----------------ERETPEAEDAILE 66 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHH--HhCC-----EEEEEecCCCC----------------CCCCHHHHHHHHH
Confidence 78888999999999999999999999999 6778 77888766653 1223466789999
Q ss_pred HHhhcCccccc-cccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDN-WYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~-~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|+.||++||- .++.+ ++-+...+...+|. ++|.+|.
T Consensus 67 ~L~WLGl~wde~~~~QS--~r~~~Y~~~~~~Li-~~G~AY~ 104 (472)
T COG0008 67 DLEWLGLDWDEGPYYQS--ERFDIYYEYAEKLI-EKGKAYV 104 (472)
T ss_pred HHHhcCCCCCCceeehh--hhHHHHHHHHHHHH-HCCCeEE
Confidence 99999999997 56544 67788888899999 9999996
No 87
>PLN02907 glutamate-tRNA ligase
Probab=99.51 E-value=1.6e-12 Score=144.08 Aligned_cols=96 Identities=18% Similarity=0.187 Sum_probs=79.2
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 92 (576)
.-+++--||.|||.||||||+++++...++| ++.| .-++++-.+|- ..-...+.+.|
T Consensus 212 ~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G-----~~iLR~eDTdp----------------~r~~~e~~~~I 268 (722)
T PLN02907 212 GKVCTRFPPEPSGYLHIGHAKAALLNQYFAR--RYKG-----KLIVRFDDTNP----------------SKESDEFVENI 268 (722)
T ss_pred CceEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEEecCCCC----------------CcCChHHHHHH
Confidence 3478899999999999999999999999999 6678 66666655443 12235678899
Q ss_pred HHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 93 KKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 93 ~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
.++|+.||++||..+.++ .+.+...+...+|. ++|.+|.
T Consensus 269 ~~dl~wLG~~~d~~~~qS--~r~~~y~~~a~~Li-~~G~aY~ 307 (722)
T PLN02907 269 LKDIETLGIKYDAVTYTS--DYFPQLMEMAEKLI-KEGKAYV 307 (722)
T ss_pred HHHHHHcCCCCCCccccc--ccHHHHHHHHHHHH-HcCCeee
Confidence 999999999999776655 57788889999999 9999996
No 88
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=99.50 E-value=1.4e-12 Score=138.04 Aligned_cols=95 Identities=14% Similarity=0.011 Sum_probs=73.2
Q ss_pred EEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy2393 14 IFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRK 93 (576)
Q Consensus 14 ~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 93 (576)
-+++--+|.|||.|||||||++++...+|| +..| .-++++-.+|- ..-...+.+.|.
T Consensus 29 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G-----~~iLRieDTd~----------------~r~~~e~~~~I~ 85 (554)
T PRK05347 29 RVHTRFPPEPNGYLHIGHAKSICLNFGLAQ--DYGG-----KCNLRFDDTNP----------------EKEDQEYVDSIK 85 (554)
T ss_pred ceEEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEEECCCCC----------------CcCChHHHHHHH
Confidence 378888999999999999999999999999 5667 66666544432 223356788999
Q ss_pred HHHhhcCcccc-ccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 94 KYLDGFYIKFD-NWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 94 ~~l~~lgi~~d-~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
++|+.||+.|| ..+.++ .+.+...+...+|. ++|.+|.
T Consensus 86 ~dL~wLGi~~d~~~~~qS--~r~~~~y~~a~~Li-~~G~AY~ 124 (554)
T PRK05347 86 EDVRWLGFDWSGELRYAS--DYFDQLYEYAVELI-KKGKAYV 124 (554)
T ss_pred HHHHHcCCCCCCCceeee--cCHHHHHHHHHHHH-HcCCEee
Confidence 99999999995 444444 45555556667899 9999996
No 89
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.48 E-value=4.8e-13 Score=125.32 Aligned_cols=125 Identities=20% Similarity=0.185 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCC---CCccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHH
Q psy2393 407 SDLIGKYINIASRSSSFIEKYFK-GYL---NMKWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT--NFINI 479 (576)
Q Consensus 407 ~~~~~~~~n~~~R~~~~~~~~~~-~~~---~~~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~--~~~n~ 479 (576)
.+++++++|+++.+..-+.+ +. ... +.... .| +|+++++..+.+.+.++|++|+|+.+++.+++|+ .++|.
T Consensus 10 ~~~~~Kl~N~~rf~~~~~~~-~~~~~~~~~~~~~~~~D-~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~~f~~~~l~n~ 87 (180)
T cd07960 10 AEAYRKIRNTFRFLLGNLND-FDPAKDAVPYEELLELD-RYALHRLNELIKEVREAYENYEFHKVYQALNNFCTVDLSAF 87 (180)
T ss_pred HHHHHHHHHHHHHHHHcccC-CCcccccCChhhccHHH-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 55799999998655432221 11 111 01122 25 9999999999999999999999999999999999 48899
Q ss_pred hhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 480 FFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 480 y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
|++..|||.+........+ ..+..++..+++.++++|+|||||+||+||+.||.
T Consensus 88 Yi~~~k~~~~~~~~~~~~~-~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~ 141 (180)
T cd07960 88 YLDIIKDRLYCDAKDSLER-RSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPG 141 (180)
T ss_pred HHHhcccceecCCCCCHHH-HHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhccc
Confidence 9999999987432111211 33445677889999999999999999999999985
No 90
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=99.48 E-value=3.4e-12 Score=136.15 Aligned_cols=95 Identities=20% Similarity=0.207 Sum_probs=77.0
Q ss_pred EEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy2393 14 IFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRK 93 (576)
Q Consensus 14 ~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 93 (576)
-+++--||.|||+||||||+++++...++| .+.| .-++++-.+| |..-...+.+.|.
T Consensus 52 ~v~tRFAPsPtGyLHIGharaAllN~l~Ar--~~gG-----~~iLRiEDTD----------------p~R~~~e~~d~Il 108 (601)
T PTZ00402 52 KVVTRFPPEASGFLHIGHAKAALINSMLAD--KYKG-----KLVFRFDDTN----------------PSKEKEHFEQAIL 108 (601)
T ss_pred eeEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEEEcCCC----------------CcccCHHHHHHHH
Confidence 378889999999999999999999999999 5677 6666654443 2233467789999
Q ss_pred HHHhhcCccccc-cccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 94 KYLDGFYIKFDN-WYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 94 ~~l~~lgi~~d~-~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
++|++||+.||. .+..+ ++.+...++..+|. ++|++|.
T Consensus 109 eDL~WLGl~wDe~~~~QS--dr~d~y~e~a~~Li-~~G~AY~ 147 (601)
T PTZ00402 109 DDLATLGVSWDVGPTYSS--DYMDLMYEKAEELI-KKGLAYC 147 (601)
T ss_pred HHHHHCCCCCCCceeecc--ccHHHHHHHHHHHH-HcCCEEE
Confidence 999999999985 54444 57788888999999 9999994
No 91
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.46 E-value=2.4e-12 Score=122.82 Aligned_cols=90 Identities=21% Similarity=0.217 Sum_probs=69.0
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|+|||+|||||+|++++...++| +..| .-++++-.+|- + .-...+.+.|.+
T Consensus 2 v~~RFAPsPtG~lHlG~~r~al~n~l~Ar--~~~G-----~~iLRieDtD~---~-------------R~~~~~~~~I~~ 58 (230)
T cd00418 2 VVTRFAPSPTGYLHIGHARTALFNFAFAR--KYGG-----KFILRIEDTDP---E-------------RSRPEYVESILE 58 (230)
T ss_pred ceEEeCCCCCCcccHHHHHHHHHHHHHHH--HcCC-----eEEEEeCcCCC---C-------------CCChHHHHHHHH
Confidence 35566899999999999999999999999 5677 66777655543 1 223567789999
Q ss_pred HHhhcCccccc-cccCCChhhHHHHHHHHHHHHhcCC
Q psy2393 95 YLDGFYIKFDN-WYSTDSIENIDLVQKIYDTLYNKAK 130 (576)
Q Consensus 95 ~l~~lgi~~d~-~~~t~~~~~~~~v~~~~~~L~~~~g 130 (576)
+|++||+.||. .+..+ ++.+..++...+|. ++|
T Consensus 59 dL~wlGl~wd~~~~~QS--~r~~~y~~~~~~L~-~~g 92 (230)
T cd00418 59 DLKWLGLDWDEGPYRQS--DRFDLYRAYAEELI-KKG 92 (230)
T ss_pred HHHHcCCCCCCCeeehh--cCHHHHHHHHHHHH-HcC
Confidence 99999999996 44433 46666777788888 777
No 92
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.44 E-value=1e-11 Score=118.56 Aligned_cols=94 Identities=18% Similarity=0.080 Sum_probs=74.7
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|+|||+||+||++++++...++| ...| .-++.+-.+|- + .....+.+.|.+
T Consensus 2 v~~RFAPsPtG~lHlG~~~~al~~~l~Ar--~~~G-----~~iLRieDtD~---~-------------R~~~~~~~~I~~ 58 (238)
T cd00807 2 VVTRFPPEPNGYLHIGHAKAILLNFGYAK--KYGG-----RCNLRFDDTNP---E-------------KEEEEYVDSIKE 58 (238)
T ss_pred ceEecCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEEecCCCC---c-------------ccchHHHHHHHH
Confidence 45667899999999999999999999998 5567 65666544432 2 233567789999
Q ss_pred HHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|+.||+.||..+..+ ++.+..++...+|. ++|.+|.
T Consensus 59 dL~wlGl~wD~~~~QS--~r~~~Y~~~~~~L~-~~g~aY~ 95 (238)
T cd00807 59 DVKWLGIKPYKVTYAS--DYFDQLYEYAEQLI-KKGKAYV 95 (238)
T ss_pred HHHHcCCCCCCceecc--cCHHHHHHHHHHHH-HcCCeec
Confidence 9999999999554433 67788888999999 9999997
No 93
>PLN02859 glutamine-tRNA ligase
Probab=99.44 E-value=4.5e-12 Score=138.54 Aligned_cols=94 Identities=13% Similarity=-0.002 Sum_probs=72.0
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--||.|||.||||||+++++...++| .+.| .-++++-.+| |..-...|.+.|.+
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar--~~~G-----~~~LRieDTd----------------p~r~~~e~~~~I~e 321 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGG-----CCYLRFDDTN----------------PEAEKKEYIDHIEE 321 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEEecCCC----------------CCccchHHHHHHHH
Confidence 67888999999999999999999999999 4567 6666655444 22234677899999
Q ss_pred HHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|++||+.+|..+.++ .|.+..-+...+|. ++|.+|.
T Consensus 322 dL~WLG~~~d~~~~qS--d~f~~~Y~~A~~Li-~~G~AY~ 358 (788)
T PLN02859 322 IVEWMGWEPFKITYTS--DYFQELYELAVELI-RRGHAYV 358 (788)
T ss_pred HHHHcCCCCCCccccc--HhHHHHHHHHHHHH-HcCCeEe
Confidence 9999999998766555 34433333556699 9999996
No 94
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.43 E-value=5.8e-12 Score=121.25 Aligned_cols=71 Identities=25% Similarity=0.222 Sum_probs=54.1
Q ss_pred EEEe-eecCcchhHhHHHHHHHhcCCCCCcEEeeeccEE-eCCccccccCCCccChhHHhhcCCChhHHHHHHHhh
Q psy2393 313 YHFI-GKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMT-INGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASK 386 (576)
Q Consensus 313 i~~~-G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~-~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~ 386 (576)
.|++ |.|+.. +.....+++.++|.+.|. +.++..+. .+|.|||||.|+ .+++.+.+.|+.+.+++.|++..
T Consensus 120 thViRG~D~~~-~t~~q~~l~~aLg~~~p~-~~h~pll~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~l 192 (239)
T cd00808 120 THVIRGEEHLS-STPKQILLYEALGWEPPK-FAHLPLILNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALL 192 (239)
T ss_pred CEEEEChhhhh-ChHHHHHHHHHcCCCCCc-eEeeccccCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHc
Confidence 4444 788763 344445577888988774 45556654 489999999998 79999999999999999999874
No 95
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=99.43 E-value=9.4e-12 Score=131.67 Aligned_cols=93 Identities=16% Similarity=0.105 Sum_probs=72.1
Q ss_pred EEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2393 16 VTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKY 95 (576)
Q Consensus 16 v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 95 (576)
++--+|.|||.|||||||++++...++| +..| .-++++-.+|- ..-...+.+.|.++
T Consensus 2 ~tRFaPsPtG~LHiG~ar~al~n~~~A~--~~~G-----~~iLRieDTd~----------------~r~~~e~~~~I~~d 58 (522)
T TIGR00440 2 HTRFPPEPNGYLHIGHAKSICLNFGYAK--YYNG-----TCNLRFDDTNP----------------VKEDPEYVESIKRD 58 (522)
T ss_pred eEecCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEEEcCCCc----------------ccCChHHHHHHHHH
Confidence 4566899999999999999999999998 6677 66666655443 12335678899999
Q ss_pred HhhcCcccc-ccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 96 LDGFYIKFD-NWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 96 l~~lgi~~d-~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
|+.||+.|| ..+..+ ++.+...+...+|. ++|.+|.
T Consensus 59 L~wLG~~~d~~~~~qS--~~~~~~~~~a~~Li-~~G~AY~ 95 (522)
T TIGR00440 59 VEWLGFKWEGKIRYSS--DYFDELYRYAEELI-KKGLAYV 95 (522)
T ss_pred HHHcCCCCCCCceEcc--ccHHHHHHHHHHHH-HcCCEEe
Confidence 999999995 444444 45566667778999 9999996
No 96
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.43 E-value=2.1e-12 Score=121.32 Aligned_cols=135 Identities=13% Similarity=0.127 Sum_probs=97.9
Q ss_pred cchhhHhhhhhHHHHHHHHHHHHHHHHHHHHH-cCCC---CC-Cccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy2393 396 FNSQSFISCVNSDLIGKYINIASRSSSFIEKY-FKGY---LN-MKWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYI 469 (576)
Q Consensus 396 fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~-~~~~---~~-~~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~ 469 (576)
||.+.+... .++++++++|++..+.+..... +... .+ ..+. .| +|++++++.+.+.+.++|++|+|+.|++.
T Consensus 1 ~s~~~v~~~-~~~f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D-~wil~~l~~~i~~~~~~~e~~~f~~a~~~ 78 (183)
T cd07961 1 FSEKGVREV-VRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLD-RWILSRLNSLIKEVTEEMEAYDLYTAVRA 78 (183)
T ss_pred CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhH-HHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 456665444 3558999999985554311111 1111 11 1222 26 99999999999999999999999999999
Q ss_pred HHHHH-HHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 470 VIEQT-NFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 470 l~~~~-~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
++.|+ ..++.|++.+|+..+.... .. .......++..++..++++|+||+||+||+||+.++.
T Consensus 79 l~~f~~~~~~~Y~e~~K~~~~~~~~-~~-~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~ 142 (183)
T cd07961 79 LLEFIDELTNWYIRRNRKRFWGEEG-DD-DKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRR 142 (183)
T ss_pred HHHHHHHhhhhHhhhchHHhcCCCC-ch-hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 99999 5568899998875543321 11 2233456777899999999999999999999999974
No 97
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.41 E-value=2.6e-12 Score=111.27 Aligned_cols=106 Identities=17% Similarity=0.229 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCC----ccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcC
Q psy2393 411 GKYINIASRSSSFIEKYFKGYLNM----KWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNK 485 (576)
Q Consensus 411 ~~~~n~~~R~~~~~~~~~~~~~~~----~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k 485 (576)
....|+++|+.+++.+..++..|. ... .| .++++.+.++.+++.++|++++++++++.+++++..+|+|++...
T Consensus 7 ~~~~n~l~R~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~~~~~~~ 85 (117)
T cd07958 7 EGAYRFLNRVWRLVTELAEALAAPAAAAELSEED-KELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKYKKKDA 85 (117)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccchhh-HHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcccc
Confidence 345577777777766654444332 222 25 999999999999999999999999999999999999999987544
Q ss_pred ccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHc
Q psy2393 486 PWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFL 532 (576)
Q Consensus 486 ~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L 532 (576)
| +..++.++++.++++|+||+|++|+++|+.|
T Consensus 86 p---------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 86 Q---------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred c---------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 3 3466678999999999999999999999875
No 98
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=99.41 E-value=9.1e-12 Score=137.68 Aligned_cols=94 Identities=18% Similarity=0.118 Sum_probs=75.6
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--||.|||.|||||++++++...++| +..| .-++++-.+|- ..-...+.+.|.+
T Consensus 32 v~tRFaPsPtG~lHiGhar~alln~~~A~--~~~G-----~~~LR~eDTd~----------------~r~~~e~~~~I~~ 88 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILLNFGIAR--DYGG-----RCHLRMDDTNP----------------ETEDTEYVEAIKD 88 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEEeCCCCC----------------CcCChHHHHHHHH
Confidence 78888999999999999999999999998 6677 66666544432 2233567889999
Q ss_pred HHhhcCccccc-cccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDN-WYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~-~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|++||++||. .+.++ ++.+...+...+|. ++|.+|.
T Consensus 89 dl~wLG~~wd~~~~~qS--~~~~~y~~~a~~Li-~~G~aY~ 126 (771)
T PRK14703 89 DVRWLGFDWGEHLYYAS--DYFERMYAYAEQLI-KMGLAYV 126 (771)
T ss_pred HHHHcCCCCCCCceEee--cCHHHHHHHHHHHH-HcCCccc
Confidence 99999999984 34444 57788888888999 9999996
No 99
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.39 E-value=5.9e-12 Score=112.09 Aligned_cols=122 Identities=16% Similarity=0.161 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCC-C-CcccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHhhh
Q psy2393 407 SDLIGKYINIASRSSSFIEKYFKGYL-N-MKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTN--FINIFFD 482 (576)
Q Consensus 407 ~~~~~~~~n~~~R~~~~~~~~~~~~~-~-~~~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~--~~n~y~~ 482 (576)
..++.+++|+...+.... ...+... + ......+.++++.+..+.+.+.++|++++++++++.+++++. .+|+|++
T Consensus 10 ~~~l~k~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~~~~~~N~Yi~ 88 (135)
T cd07962 10 RNFCNKLWNAARFVLMNL-EDDDEPEEDPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFWNDFCDWYLE 88 (135)
T ss_pred HHHHHHHHHHHHHHHHcc-cccCccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhHHHHH
Confidence 456888888875431110 0011100 0 111222289999999999999999999999999999999995 8999999
Q ss_pred hcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHc
Q psy2393 483 QNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFL 532 (576)
Q Consensus 483 ~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L 532 (576)
..+||....+ ..++..++.++.++++.++++|+||+||+|+++|+.|
T Consensus 89 ~~~pW~~~~~---~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 89 LVKPRLYGED---EEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HhhHHHcCCC---hHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 9999976422 2346677888999999999999999999999999875
No 100
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.38 E-value=1.5e-12 Score=118.53 Aligned_cols=90 Identities=29% Similarity=0.454 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhc
Q psy2393 440 NDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT--NFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYL 517 (576)
Q Consensus 440 ~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~--~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll 517 (576)
|+|+++.+..+.+.+.++|++|+|+.|+..+++|+ .++|+|++..+||.+.++.... .+ +..++..+++.++++|
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~--~~-~~~~l~~~l~~~~~ll 77 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDES--RE-AQYTLYEILKILLILL 77 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHH--HH-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhH--HH-HHHHHHHHHHHHhhcc
Confidence 38999999999999999999999999999999984 5679999999999887654322 23 6688889999999999
Q ss_pred cccccHHHHHHHHHc
Q psy2393 518 KPILPNLAKSVETFL 532 (576)
Q Consensus 518 ~Pi~P~~ae~i~~~L 532 (576)
+|||||+||++|+.|
T Consensus 78 ~P~~P~~aEeiw~~l 92 (153)
T PF08264_consen 78 SPFMPFIAEEIWQRL 92 (153)
T ss_dssp TTTSHHHHHHHHHHC
T ss_pred CCCCcHHHHHHHHHh
Confidence 999999999999887
No 101
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=99.37 E-value=5.4e-12 Score=123.87 Aligned_cols=92 Identities=18% Similarity=0.200 Sum_probs=73.3
Q ss_pred EcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy2393 17 TTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYL 96 (576)
Q Consensus 17 ~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 96 (576)
+--.|+|||.|||||+|++++...++| +..| .-++.+-.+|..- ..+.+.+.|.++|
T Consensus 3 ~RFAPSPtG~lHiG~~rtAL~n~l~Ar--~~gG-----~~iLRiEDtD~~R----------------~~~~~~~~I~~dL 59 (272)
T TIGR03838 3 GRFAPSPSGPLHFGSLVAALGSYLDAR--AHGG-----RWLVRIEDLDPPR----------------EVPGAADDILRTL 59 (272)
T ss_pred eeeCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEEeCcCCCCC----------------CChHHHHHHHHHH
Confidence 445799999999999999999999999 6678 7777776665421 2245678899999
Q ss_pred hhcCccccc-cccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 97 DGFYIKFDN-WYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 97 ~~lgi~~d~-~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
++||++||- .+..+ ++.+.-.++..+|. ++|.+|.
T Consensus 60 ~wLGl~wDe~~~~QS--~r~~~Y~~~~~~L~-~~G~aY~ 95 (272)
T TIGR03838 60 EAYGLHWDGEVVYQS--QRHALYQAALDRLL-AAGLAYP 95 (272)
T ss_pred HHcCCCCCCCeeeee--CCHHHHHHHHHHHH-HcCCEEe
Confidence 999999994 33433 56778888889999 9999996
No 102
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=99.36 E-value=7.5e-12 Score=124.22 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=74.1
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--.|+|||+|||||++++++...++| ...| .-++++-.+|. + .....+.+.|.+
T Consensus 6 v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar--~~~G-----~~iLRiEDtD~---~-------------R~~~~~~~~I~~ 62 (299)
T PRK05710 6 YIGRFAPSPSGPLHFGSLVAALGSWLDAR--AHGG-----RWLLRIEDIDP---P-------------REVPGAADAILA 62 (299)
T ss_pred eeEEeCcCCCCcccHHHHHHHHHHHHHHH--HcCC-----EEEEEECcCCC---C-------------ccchHHHHHHHH
Confidence 66777899999999999999999999998 5567 66666654443 1 223566789999
Q ss_pred HHhhcCccccc-cccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDN-WYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~-~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|++||++||- .+..+ ++.+..+++..+|. ++|.+|.
T Consensus 63 dL~wlGl~wDe~~~~QS--~r~~~Y~~~~~~L~-~~G~aY~ 100 (299)
T PRK05710 63 DLEWLGLHWDGPVLYQS--QRHDAYRAALDRLR-AQGLVYP 100 (299)
T ss_pred HHHHCCCCCCCCceEee--ccHHHHHHHHHHHH-HCCCcee
Confidence 99999999993 44433 56778888899999 9999995
No 103
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=99.35 E-value=5.2e-11 Score=126.05 Aligned_cols=94 Identities=16% Similarity=-0.023 Sum_probs=74.9
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|.|||+||||||+++++...++| +..| .-++.+-.+| |..-...+.+.|.+
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar--~~gG-----~~iLRiEDTD----------------p~r~~~e~~~~I~~ 108 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSAR--AHGG-----KCYLRYDDTN----------------PETEEQVYIDAIME 108 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEEECCCC----------------ccccChHHHHHHHH
Confidence 67788999999999999999999999998 5667 6666665444 22344677899999
Q ss_pred HHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|+.||++||..+.++ .|.+...+...+|. ++|.+|.
T Consensus 109 dL~wLGi~~D~~~~qS--~y~~~~ye~A~~Li-~~G~AY~ 145 (574)
T PTZ00437 109 MVKWMGWKPDWVTFSS--DYFDQLHEFAVQLI-KDGKAYV 145 (574)
T ss_pred HHHHcCCCCCCCCcCc--hhHHHHHHHHHHHH-HcCCEEE
Confidence 9999999999766544 56666667778899 9999996
No 104
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=99.33 E-value=2.1e-11 Score=123.47 Aligned_cols=94 Identities=17% Similarity=0.191 Sum_probs=68.5
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|+|||+|||||++++++...++| +..| .-++.+-.+|.. .....+.+.|.+
T Consensus 2 v~tRFAPsPtG~lHiG~~r~al~n~~~Ar--~~~G-----~~iLRieDtD~~----------------R~~~~~~~~i~~ 58 (314)
T PF00749_consen 2 VRTRFAPSPTGYLHIGHARTALLNYLFAR--KYGG-----KFILRIEDTDPE----------------RCRPEFYDAILE 58 (314)
T ss_dssp -EEEE---SSSS-BHHHHHHHHHHHHHHH--HTTS-----EEEEEEETSSTT----------------TCHHHHHHHHHH
T ss_pred eeEeeCCCCCCCcccchhHHHHHHHHHHh--ccCc-----eEEEeccccccc----------------cchhhHHHHHHh
Confidence 34556799999999999999999999999 7778 777777665542 122566788999
Q ss_pred HHhhcCcccc-ccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFD-NWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d-~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|+.||+.|| ..+..+ .+.+..+++..+|. ++|.+|.
T Consensus 59 ~L~wlGl~~D~~~~~QS--~r~~~Y~~~~~~L~-~~g~aY~ 96 (314)
T PF00749_consen 59 DLRWLGLEWDYGPYYQS--DRLEIYQEAAEKLI-DKGKAYP 96 (314)
T ss_dssp HHHHHT---STCEEEGG--GGHHHHHHHHHHHH-HTTSEEE
T ss_pred heeEEEEecCCeEEeHH--HHHHHHHHHHHHHh-hcCCCcc
Confidence 9999999998 455544 67788888999999 9999986
No 105
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=98.99 E-value=5.5e-09 Score=90.04 Aligned_cols=106 Identities=21% Similarity=0.215 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCC----ccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhc
Q psy2393 410 IGKYINIASRSSSFIEKYFKGYLNM----KWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQN 484 (576)
Q Consensus 410 ~~~~~n~~~R~~~~~~~~~~~~~~~----~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~ 484 (576)
..+++|.+.|+.+++.++..+..+. ... .| .|+++.+..+.+.+.++|++|+++.+++.+++|+...|+|++..
T Consensus 7 ~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~d-~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~y~~~~ 85 (117)
T cd07375 7 ARAFLNRLYRLLSFFRKALGGTQPKWDNELLEEAD-RELLARLQEFIKRTTNALEALDPTTAVQELFKFTNELNWYLDEL 85 (117)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcChhhcCHhh-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccHHHHHh
Confidence 3456777788888776665443332 112 25 89999999999999999999999999999999998889999999
Q ss_pred CccccccCcccHHHHHHHHHHHHHHHHHHHHhccccc
Q psy2393 485 KPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPIL 521 (576)
Q Consensus 485 k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~ 521 (576)
+||.+.++ ....+..++.++++.++++|+|||
T Consensus 86 ~pw~~~~~-----~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 86 KPALQTEE-----LREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred hHHHcCch-----hHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99987542 223445677789999999999996
No 106
>KOG1149|consensus
Probab=98.94 E-value=1.4e-06 Score=87.87 Aligned_cols=94 Identities=15% Similarity=0.183 Sum_probs=69.6
Q ss_pred EcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy2393 17 TTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYL 96 (576)
Q Consensus 17 ~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 96 (576)
+---|.|||-||||-+|+++...++|| +..| .-++.+-.+|-- .++....+.+.++|
T Consensus 36 vRFAPSPTGfLHlGgLRTALfNYLfAr--k~gG-----kFiLRiEDTDq~----------------R~v~gs~e~i~~~L 92 (524)
T KOG1149|consen 36 VRFAPSPTGFLHLGGLRTALFNYLFAR--KKGG-----KFILRIEDTDQK----------------RLIRGSEEAIYEDL 92 (524)
T ss_pred EeecCCCCcceehhhHHHHHHHHHHHH--hcCC-----eEEEEecccccc----------------ccccchHHHHHHHH
Confidence 344589999999999999999999999 7778 778887666531 23344457899999
Q ss_pred hhcCccccccccC-------CChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 97 DGFYIKFDNWYST-------DSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 97 ~~lgi~~d~~~~t-------~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
..+||.||-=.+. ...+..+.-++..++|. +.|.+|+
T Consensus 93 ~w~nl~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll-~sG~AYr 136 (524)
T KOG1149|consen 93 KWANLDWDEGPGVGGPFGPYEQSERLEIYKKYAEKLL-ESGHAYR 136 (524)
T ss_pred HhcCCCcccCCCcCCCCCchhhHHHHHHHHHHHHHHH-hcCCeeE
Confidence 9999999832211 12244555667778899 9999997
No 107
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=98.67 E-value=3.3e-07 Score=83.64 Aligned_cols=110 Identities=13% Similarity=0.115 Sum_probs=87.5
Q ss_pred CChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcC-CC----CCCc-ccC-ChHHHHHH
Q psy2393 374 MNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFK-GY----LNMK-WVK-DNDTFLSK 446 (576)
Q Consensus 374 ~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~-~~----~~~~-~~~-d~~~l~~~ 446 (576)
+|.|++||++++..+ ..+++|+++.+.+.. ++...++.+++.|+.+++.+... .. +... +.. ++..|+..
T Consensus 3 i~~~a~~~~~l~~~~--~~~~~fd~~~~~~~~-~~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~~ll~~~~E~~L~~~ 79 (156)
T cd07956 3 VGVGAVKYQDLSNKR--IKDYTFDWERMLSFE-GDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILL 79 (156)
T ss_pred cchhHHHHHHHhcCC--CCCceecHHHHHhhc-CCCchhHHHHHHHHHHHHHhCCCcCccccccchhhcCCHHHHHHHHH
Confidence 789999999999844 467899999876554 44577899999999999988542 11 1111 111 22778999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcCc
Q psy2393 447 LRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKP 486 (576)
Q Consensus 447 l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k~ 486 (576)
+..+++.+..++.+.+++.++.++.+++..++.||+.++.
T Consensus 80 l~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~ffd~v~V 119 (156)
T cd07956 80 LAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNACPV 119 (156)
T ss_pred HHHhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999999998764
No 108
>KOG1147|consensus
Probab=98.44 E-value=5.2e-06 Score=85.76 Aligned_cols=98 Identities=21% Similarity=0.178 Sum_probs=76.0
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+|+--||-|+|.||||||..+++.--++- +++| . .++-+||.- |..=-+++...|.+
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAALLNqYfa~--~~~G-----~---LIvRFDDTN-------------PaKE~~eFe~~Ile 257 (712)
T KOG1147|consen 201 VVTRFPPEPSGYLHIGHAKAALLNQYFAQ--AYQG-----K---LIVRFDDTN-------------PAKENEEFEDVILE 257 (712)
T ss_pred eEEecCCCCCceeehhhHHHHHHHHHHHH--hcCc-----e---EEEEecCCC-------------cchhhHHHHHHHHH
Confidence 67788999999999999998877666654 5566 3 333345532 33334778899999
Q ss_pred HHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEeccee
Q psy2393 95 YLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKIN 138 (576)
Q Consensus 95 ~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~ 138 (576)
++..|||.+|.+..|+ .|-+.+...-.+|. +.|.+|..+.+
T Consensus 258 Dl~~LgIkpd~~TyTS--DyF~~i~dycv~li-keGKAYvDDTp 298 (712)
T KOG1147|consen 258 DLSLLGIKPDRVTYTS--DYFDEIMDYCVKLI-KEGKAYVDDTP 298 (712)
T ss_pred HHHHhCcCcceeeech--hhHHHHHHHHHHHH-hcCcccccCCc
Confidence 9999999999998877 57888888889999 99999987644
No 109
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.93 E-value=0.0014 Score=67.93 Aligned_cols=77 Identities=23% Similarity=0.208 Sum_probs=48.2
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 89 (576)
.++++.|++|. -|+|.+||||.. ....+.++++ .| +++.+.. .|.|..- .+ +.+++++ +++.
T Consensus 63 ~~~~~~iytG~-~PSG~lHLGh~~---~~~~~~~lQ~-~g-----~~~~i~I-aD~ha~~-----~~-~~~~e~~-~~~~ 124 (368)
T PRK12285 63 NGKPFAVYTGF-MPSGPMHIGHKM---VFDELKWHQE-FG-----ANVYIPI-ADDEAYA-----AR-GLSWEET-REWA 124 (368)
T ss_pred cCCCeEEEEcc-CCCCCccHHHHH---HHHHHHHHHh-cC-----CCEEEEe-cchHHHh-----cC-CCCHHHH-HHHH
Confidence 44566665543 666999999964 3444555555 78 8876554 3544321 11 4566544 4555
Q ss_pred HHHHHHHhhcCcccc
Q psy2393 90 SNRKKYLDGFYIKFD 104 (576)
Q Consensus 90 ~~~~~~l~~lgi~~d 104 (576)
.+...++.++|++++
T Consensus 125 ~~~~~~~lA~G~Dp~ 139 (368)
T PRK12285 125 YEYILDLIALGFDPD 139 (368)
T ss_pred HHHHHHHHHhCCCcc
Confidence 557788889999887
No 110
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=97.85 E-value=0.0001 Score=75.30 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=42.6
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 92 (576)
+.++.. --|+|.+||||..+.+.. ..+.+...| .++.+.. .|-|-+- . ..++.++ +++....
T Consensus 4 ~~v~sG--iqPTG~~HLGnylga~k~--~~~lq~~~~-----~~~~~~I-ADlHalt---~----~~~~~~l-~~~~~~~ 65 (332)
T PRK12556 4 KIMLTG--IKPTGYPHLGNYIGAIKP--ALQMAKNYE-----GKALYFI-ADYHALN---A----VHDPEQF-RSYTREV 65 (332)
T ss_pred CEEEEE--ECCCCcchHHHHHHHHHH--HHHHHHhcC-----CeEEEEE-echhhcc---C----CCCHHHH-HHHHHHH
Confidence 344454 356699999997775432 223334456 5555443 3444321 0 1255544 4555667
Q ss_pred HHHHhhcCcccc
Q psy2393 93 KKYLDGFYIKFD 104 (576)
Q Consensus 93 ~~~l~~lgi~~d 104 (576)
..++-..|++++
T Consensus 66 ~~~~lA~GlDP~ 77 (332)
T PRK12556 66 AATWLSLGLDPE 77 (332)
T ss_pred HHHHhheeeccc
Confidence 778889999987
No 111
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=97.83 E-value=0.0011 Score=67.77 Aligned_cols=68 Identities=16% Similarity=0.264 Sum_probs=39.6
Q ss_pred CCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcC
Q psy2393 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFY 100 (576)
Q Consensus 21 P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 100 (576)
--|+|.+||||..+.+..= ++...| +++.+... |.|-.-. ..+..+. -.+.....+..++...|
T Consensus 9 ~~PTG~~HlG~~l~~~~~~----~~~q~~-----~~~~i~Ia-D~ha~t~-----~~~~~~~-~~~~~~~~~~~~~lA~G 72 (328)
T TIGR00233 9 IQPSGKMHLGHYLGAIQTK----WLQQFG-----VELFICIA-DLHAITV-----KDNTDPD-ALRKAREELAADILAVG 72 (328)
T ss_pred eCCCcHhHHHHHHHHHHHH----HHHhCC-----CCEEEEee-cchhhcC-----CCCCCHH-HHHHHHHHHHHHHHHhC
Confidence 4777999999977754433 333568 88766543 4443221 0111232 23444455667777899
Q ss_pred cccc
Q psy2393 101 IKFD 104 (576)
Q Consensus 101 i~~d 104 (576)
++++
T Consensus 73 lDp~ 76 (328)
T TIGR00233 73 LDPK 76 (328)
T ss_pred cChh
Confidence 9987
No 112
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=97.75 E-value=0.00014 Score=63.02 Aligned_cols=75 Identities=17% Similarity=0.151 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCC-----cc--cCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcC
Q psy2393 413 YINIASRSSSFIEKYFKGYLNM-----KW--VKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNK 485 (576)
Q Consensus 413 ~~n~~~R~~~~~~~~~~~~~~~-----~~--~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k 485 (576)
+.++++|+.+++++........ .. .+++..|+..+..++..+..++++++++.+++++.+++..+|+||+.++
T Consensus 1 v~Ya~aRi~sIl~k~~~~~~~~~~~~~~~~~~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La~~f~~fy~~~~ 80 (119)
T PF05746_consen 1 VQYAYARISSILRKAEESGINDEYDDDFLLEEEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELAQAFNSFYDNVR 80 (119)
T ss_dssp HHHHHHHHHHHHHHCTCTTCCCCHCCHHHS-SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHS-
T ss_pred ChHHHHHHHHHHHcCCCcCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3578889999999864332211 11 1122789999999999999999999999999999999999999999987
Q ss_pred cc
Q psy2393 486 PW 487 (576)
Q Consensus 486 ~~ 487 (576)
..
T Consensus 81 I~ 82 (119)
T PF05746_consen 81 IL 82 (119)
T ss_dssp ST
T ss_pred cc
Confidence 54
No 113
>PLN02486 aminoacyl-tRNA ligase
Probab=97.75 E-value=0.0095 Score=61.93 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=48.2
Q ss_pred CCCCeEEEEcCCCCCCC-cccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHH
Q psy2393 9 KDVRRIFVTTALPYANG-ELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINN 87 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG-~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~ 87 (576)
+.++++++++|- -|+| .+||||+-+ ...++.+++..| ..+... -+|+ +....+ +.+.++. ++
T Consensus 69 e~~~~~~vYtG~-~PSg~~lHlGHlv~---~~~~~~lQ~~~~-----~~~~I~-iaD~-----e~~~~~-~~~~e~i-~~ 131 (383)
T PLN02486 69 EKGEKFYLYTGR-GPSSEALHLGHLIP---FMFTKYLQDAFK-----VPLVIQ-LTDD-----EKFLWK-NLSVEES-QR 131 (383)
T ss_pred hcCCCeEEEeCC-CCCCccccHHHHHH---HHHHHHHHHhCC-----CeEEEE-ecCH-----HHHhhc-CCCHHHH-HH
Confidence 446677777754 8889 599999544 444444444445 554444 3344 333333 5666554 55
Q ss_pred HHHHHHHHHhhcCcccc
Q psy2393 88 ISSNRKKYLDGFYIKFD 104 (576)
Q Consensus 88 ~~~~~~~~l~~lgi~~d 104 (576)
+..+..+++.++|++++
T Consensus 132 ~~~en~~~iiA~G~dp~ 148 (383)
T PLN02486 132 LARENAKDIIACGFDVE 148 (383)
T ss_pred HHHHHHHHHHHhCCCCc
Confidence 55667777778999876
No 114
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.71 E-value=0.00055 Score=68.16 Aligned_cols=69 Identities=13% Similarity=-0.006 Sum_probs=40.0
Q ss_pred EEEeeecCcchhHhHHHHHHHhc-CCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFS-GRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIAS 385 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~-~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~ 385 (576)
+..+|.||...+..- .-+.... +.+.|..+...-...++|.|||||.+|.++...+. -+++.++=.+.+
T Consensus 156 ~vp~G~DQ~~~i~l~-rdla~r~n~~~~p~~l~~p~l~~l~G~KMSKS~~~~i~l~~~~---dsp~~i~~ki~~ 225 (273)
T cd00395 156 IQPGGSDQWGNITLG-RELARRFNGFTIAEGLTIPLVTKLDGPKFGKSESGPKWLDTEK---TSPYEFYQFWIN 225 (273)
T ss_pred EEEecHHHHHHHHHH-HHHHHHhCCCCCCeEEeeccccCCCCCcCCCCCCCCccccccC---CCHHHHHHHHHc
Confidence 778899996433211 1122233 34455555543333339999999999998765543 235555555544
No 115
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00027 Score=70.56 Aligned_cols=88 Identities=14% Similarity=0.216 Sum_probs=50.6
Q ss_pred EEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCc-ceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2393 14 IFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSR-QVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92 (576)
Q Consensus 14 ~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~-~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 92 (576)
+.|.+| --|+|.+||||..+.+.. ++....+ + ++.+.. .|.|-.-+ .+..+++-.+....+.
T Consensus 6 ~~vlSG-~~PSG~lHLGny~ga~~~----~v~~q~~-----~~~~f~~I-aDlha~t~------~~~~~~~~l~~~~~e~ 68 (314)
T COG0180 6 FRVLSG-IQPSGKLHLGNYLGAIRN----WVLLQEE-----YYECFFFI-ADLHAITV------RQDPTEEDLRQATREV 68 (314)
T ss_pred ceEEec-CCCCCCcchhHhHHHHHH----HHHHhcc-----cCceEEEE-ecHHHhhc------CCCChHHHHHHHHHHH
Confidence 344443 367799999999886433 2333333 3 554432 45554331 1222334556667777
Q ss_pred HHHHhhcCcccc---ccccCCChhhHHHH
Q psy2393 93 KKYLDGFYIKFD---NWYSTDSIENIDLV 118 (576)
Q Consensus 93 ~~~l~~lgi~~d---~~~~t~~~~~~~~v 118 (576)
..++-++|++++ .|.++..+++.+..
T Consensus 69 ~a~~LA~GiDP~k~~if~QS~v~e~~eLa 97 (314)
T COG0180 69 AADYLAVGLDPEKSTIFLQSEVPEHAELA 97 (314)
T ss_pred HHHHHHhccCccccEEEEccCchHHHHHH
Confidence 888889999987 35555555544443
No 116
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=97.58 E-value=0.00042 Score=72.86 Aligned_cols=69 Identities=13% Similarity=-0.002 Sum_probs=43.2
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEE-eCCccccccCCCccChhHHhhcCCChhHHHHHHHhh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMT-INGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASK 386 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~-~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~ 386 (576)
+.++|.||...+..- .-+....+...| ..+++-++. .+|.|||||.||.|++.| +. .+|..++=++.+.
T Consensus 189 iq~gG~DQ~~ni~~g-rdl~~r~~~~~~-~~lt~PlL~g~dG~KMsKS~~naI~L~d--~~-tsp~~i~qki~~~ 258 (410)
T PRK13354 189 LQIGGTDQWGNILMG-RDLQRKLEGEEQ-FGLTMPLLEGADGTKMGKSAGGAIWLDP--EK-TSPYEFYQFWMNI 258 (410)
T ss_pred EEEecHHHHHHHHHH-HHHHHHhCCCCc-eEeccCCccCCCCCccCCCCCCceeccC--CC-CCHHHHHHHHHcC
Confidence 778999996433211 112333444444 333343443 389999999999999988 44 6677777776653
No 117
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.50 E-value=0.00056 Score=71.24 Aligned_cols=89 Identities=10% Similarity=0.049 Sum_probs=51.4
Q ss_pred CCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcC
Q psy2393 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFY 100 (576)
Q Consensus 21 P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 100 (576)
-.|+|.+||||..+.+.. ..+.+...| +++.|.. .|-|-.- ...+|.++.+. ..++..++...|
T Consensus 9 iqPTG~lHLGNylGaik~--~v~lq~q~~-----~~~~~~I-ADlHAlT-------~~~dp~~lr~~-~~e~aa~~LA~G 72 (431)
T PRK12284 9 ITTTGTPHLGNYAGAIRP--AIAASRQPG-----VESFYFL-ADYHALI-------KCDDPARIQRS-TLEIAATWLAAG 72 (431)
T ss_pred ecCCCcchHHHHHHHHHH--HHHHHHhCC-----CcEEEEe-echhhcc-------CCCCHHHHHHH-HHHHHHHHHHhC
Confidence 478899999997776542 233344458 8875543 3444332 12355554433 455778888999
Q ss_pred cccc---ccccCCChhhHHHHHHHHHHHH
Q psy2393 101 IKFD---NWYSTDSIENIDLVQKIYDTLY 126 (576)
Q Consensus 101 i~~d---~~~~t~~~~~~~~v~~~~~~L~ 126 (576)
++++ .|.++.-+++. ...+++..+-
T Consensus 73 lDPek~~if~QSdvpeh~-EL~wiL~~it 100 (431)
T PRK12284 73 LDPERVTFYRQSDIPEIP-ELTWLLTCVA 100 (431)
T ss_pred CCccceEEEECCcchhHH-HHHHHHHhhh
Confidence 9987 34444445443 3344444444
No 118
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=97.40 E-value=0.0014 Score=67.23 Aligned_cols=76 Identities=17% Similarity=0.161 Sum_probs=45.4
Q ss_pred CCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHH
Q psy2393 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISS 90 (576)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 90 (576)
++++.|++| --|+|.+||||+.. .-.+.++++ .| +++.+..+ |.|..-.- ..++. -+++...
T Consensus 28 ~~~~~v~~G-~~PTG~lHLG~~~~---~~~~~~lq~-~g-----~~~~i~Ia-D~ha~~~~------~~~~~-~i~~~~~ 89 (329)
T PRK08560 28 KEEPKAYIG-FEPSGKIHLGHLLT---MNKLADLQK-AG-----FKVTVLLA-DWHAYLND------KGDLE-EIRKVAE 89 (329)
T ss_pred CCCCEEEEc-cCCCCcchhhhhHH---HHHHHHHHH-CC-----CeEEEEEc-cchhhcCC------CCCHH-HHHHHHH
Confidence 344444443 47779999999653 223555555 58 87765543 44433211 02443 4456666
Q ss_pred HHHHHHhhcCcccc
Q psy2393 91 NRKKYLDGFYIKFD 104 (576)
Q Consensus 91 ~~~~~l~~lgi~~d 104 (576)
.+..++.++|++++
T Consensus 90 ~~~~~~~A~G~dp~ 103 (329)
T PRK08560 90 YNKKVFEALGLDPD 103 (329)
T ss_pred HHHHHHHHcCCChh
Confidence 78888999999876
No 119
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=97.33 E-value=0.0013 Score=69.19 Aligned_cols=69 Identities=22% Similarity=0.129 Sum_probs=43.2
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASK 386 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~ 386 (576)
+..+|.||.. |...=.-+....+.. +...++.-++.. +|+|||||.||.|++.| +. .+|..++=++.+.
T Consensus 191 i~~gG~DQ~~-ni~~grdla~r~~~~-~~~~l~~plL~~~~G~KMsKS~~naI~L~d--~~-tsp~~i~qki~~~ 260 (408)
T PRK05912 191 LQLGGSDQWG-NILSGRDLQRRYGGK-PQFGLTMPLLTGLDGKKMGKSEGNAVWLDE--EK-TSPYEMYQKWMNI 260 (408)
T ss_pred EEeccHHHHH-HHHHHHHHHHHhCCC-CeEEEecCCcCCCCCCcccCCCCCceeCCC--CC-CCHHHHHHHHhcC
Confidence 7788999974 322211122333432 223334444433 89999999999999988 44 6778888777663
No 120
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=97.32 E-value=0.0022 Score=64.20 Aligned_cols=68 Identities=19% Similarity=0.367 Sum_probs=43.0
Q ss_pred CCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcC
Q psy2393 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFY 100 (576)
Q Consensus 21 P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 100 (576)
--|+|.+||||..+.+.. +. +++..| +++.+..+ |.|..-. ...+++ -++++...+.+++.++|
T Consensus 6 ~~PTG~lHLG~~~~al~~--~~-~lQ~ag-----~~~~~~Ia-D~ha~t~------~~~~~~-~~~~~~~~~~~~~lA~G 69 (280)
T cd00806 6 IQPSGSLHLGHYLGAFRF--WV-WLQEAG-----YELFFFIA-DLHALTV------KQLDPE-ELRQNTRENAKDYLACG 69 (280)
T ss_pred eCCCchhhHHHHHHHHHH--HH-HHHhCC-----CCEEEEec-chHHHhC------CCCCHH-HHHHHHHHHHHHHHHcC
Confidence 357799999998885432 22 223348 88776653 4454421 113454 44566677888888999
Q ss_pred cccc
Q psy2393 101 IKFD 104 (576)
Q Consensus 101 i~~d 104 (576)
++++
T Consensus 70 ~dp~ 73 (280)
T cd00806 70 LDPE 73 (280)
T ss_pred CCcc
Confidence 9885
No 121
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=97.31 E-value=0.0011 Score=68.93 Aligned_cols=78 Identities=14% Similarity=0.096 Sum_probs=43.5
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
+++.|+.| --|+|.+|||| ..+..--+.++ ...| ++|.+..+ |-|..-. .+.|.++.++ +.....
T Consensus 65 ~~~~v~~G-~~PTG~lHLG~--g~i~~~~~~~l-q~~G-----~~v~~~Ia-D~hA~~~----~~~g~~l~~i-~~~~~~ 129 (383)
T PTZ00126 65 ERPICYDG-FEPSGRMHIAQ--GILKAINVNKL-TKAG-----CVFVFWVA-DWFALLN----NKMGGDLEKI-RKVGEY 129 (383)
T ss_pred CCCEEEEE-ECCCCcccccc--hHhHhHHHHHH-HhCC-----CeEEEEEc-cceeecC----CCCCCCHHHH-HHHHHH
Confidence 44344443 47779999999 22222223333 4568 88876654 2222210 1233344443 555566
Q ss_pred HHHHHhhcCcccc
Q psy2393 92 RKKYLDGFYIKFD 104 (576)
Q Consensus 92 ~~~~l~~lgi~~d 104 (576)
+.+.+..+|++++
T Consensus 130 ~~~~~~A~GlDp~ 142 (383)
T PTZ00126 130 FIEVWKAAGMDMD 142 (383)
T ss_pred HHHHHHHhCCCcc
Confidence 7778889999876
No 122
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.06 E-value=0.002 Score=66.19 Aligned_cols=66 Identities=23% Similarity=0.393 Sum_probs=39.3
Q ss_pred CCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcC
Q psy2393 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFY 100 (576)
Q Consensus 21 P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 100 (576)
--|+|.+||||..+.+.. +.++++ + +++.++.+ |-|-.-. ..++++ +..+......++..+|
T Consensus 8 ~~PTG~lHLG~~~g~~~~--~~~lQ~--~-----~~~~~~Ia-D~ha~t~-------~~~~~~-i~~~~~~~~~~~lA~G 69 (333)
T PRK00927 8 IQPTGKLHLGNYLGAIKN--WVELQD--E-----YECFFCIA-DLHALTV-------PQDPEE-LRENTRELAADYLACG 69 (333)
T ss_pred eCCCccchHHhHHHHHHH--HHHHHh--c-----CCeEEEEe-cHHHHhC-------CCCHHH-HHHHHHHHHHHHHeEc
Confidence 356799999998876533 333333 4 56655542 3332221 124443 3455566788888999
Q ss_pred cccc
Q psy2393 101 IKFD 104 (576)
Q Consensus 101 i~~d 104 (576)
++++
T Consensus 70 lDp~ 73 (333)
T PRK00927 70 IDPE 73 (333)
T ss_pred cChh
Confidence 9886
No 123
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=96.79 E-value=0.015 Score=50.40 Aligned_cols=74 Identities=12% Similarity=0.121 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHcC-C-CCCC------c-c-cCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhh
Q psy2393 414 INIASRSSSFIEKYFK-G-YLNM------K-W-VKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQ 483 (576)
Q Consensus 414 ~n~~~R~~~~~~~~~~-~-~~~~------~-~-~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~ 483 (576)
++++.|+.+++++... + .++. . + .++...|+..+..+.+.+..++.+.+++.++.++.+++..+|.||+.
T Consensus 2 qY~~~Ri~nIl~k~~~~~~~~~~~~~~~~~l~~~~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~fy~~ 81 (122)
T smart00836 2 QYAHARICSILRKAGEAGLTLPDIADADLSLLTEPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFHSFYNK 81 (122)
T ss_pred cHHHHHHHHHHHHHHhcCCCccccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHcc
Confidence 4677899999887542 1 2221 1 1 11227788999999999999999999999999999999999999998
Q ss_pred cCcc
Q psy2393 484 NKPW 487 (576)
Q Consensus 484 ~k~~ 487 (576)
++..
T Consensus 82 v~V~ 85 (122)
T smart00836 82 CRVL 85 (122)
T ss_pred Cccc
Confidence 8743
No 124
>KOG1148|consensus
Probab=96.76 E-value=0.0045 Score=65.34 Aligned_cols=94 Identities=19% Similarity=0.130 Sum_probs=64.0
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--||-|||.|||||+-..-+.==+++ .+.| |.|+.- ||. .|+.=.++|-..|++
T Consensus 249 V~TRFPPEPNG~LHIGHaKAInvNFgyAk--~~~G-------~cyLRf-DDT-------------NPEkEee~yf~sI~e 305 (764)
T KOG1148|consen 249 VVTRFPPEPNGILHIGHAKAINVNFGYAK--AHGG-------VCYLRF-DDT-------------NPEKEEEEYFESIKE 305 (764)
T ss_pred eEEeCCCCCCceeeecchhheeechhhhh--hhCC-------eEEEec-CCC-------------CcchhhHHHHHHHHH
Confidence 77889999999999999986433322333 2334 555543 322 244444788899999
Q ss_pred HHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
.-.+||..+-.. |.+..|-+..-.+-..|. ++|++|.
T Consensus 306 ~V~WLG~~P~kv--TysSDyFdqLy~~av~LI-rkG~AYV 342 (764)
T KOG1148|consen 306 MVAWLGFEPYKV--TYSSDYFDQLYELAVELI-RKGKAYV 342 (764)
T ss_pred HHHHhCCCceee--ecchhHHHHHHHHHHHHH-hcCceeE
Confidence 999999987444 334456666666666788 8999996
No 125
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.51 E-value=0.0069 Score=62.97 Aligned_cols=52 Identities=19% Similarity=0.117 Sum_probs=33.7
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccCh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISP 366 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~ 366 (576)
+.++|.||-+.|..-- -++..+|. .+...+++-++.. +|.|||||.||.+|.
T Consensus 183 lq~GG~DQ~~ni~~gr-dl~rr~g~-~~~~~lt~PLL~~ldG~KmgKs~~~a~~~ 235 (401)
T COG0162 183 LQLGGSDQWGNILAGR-DLIRRLGQ-KKVVGLTTPLLTGLDGKKMGKSEGGAVWL 235 (401)
T ss_pred hhcCChHHHHHHHHHH-HHHHHhCC-CCeEEEEeccccCCCCCcccccCCCceEc
Confidence 8899999955443221 13344565 3345566666655 999999999995544
No 126
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=95.67 E-value=0.075 Score=59.21 Aligned_cols=78 Identities=15% Similarity=0.045 Sum_probs=40.4
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
+++.+++ +--|||.+||||. +++=+-.+-+...| ++|.+..+ |-|..- ..+.|.+.++... ....
T Consensus 31 ~~~rv~s-Gi~PTG~lHLGng---~~~aik~~~~~q~g-----~~~~~lIA-D~HAlt----~~~~~~~l~~i~~-~~~~ 95 (682)
T PTZ00348 31 PLIRCYD-GFEPSGRMHIAQG---IFKAVNVNKCTQAG-----CEFVFWVA-DWFALM----NDKVGGELEKIRI-VGRY 95 (682)
T ss_pred CCCEEEE-eeCCCCcCeeccH---HHHHHHHHHHHhCC-----CeEEEEEc-chhhhc----CCCCCCCHHHHHH-HHHH
Confidence 3444443 3478899999993 22211111223468 88765532 222211 1223333433322 2345
Q ss_pred HHHHHhhcCcccc
Q psy2393 92 RKKYLDGFYIKFD 104 (576)
Q Consensus 92 ~~~~l~~lgi~~d 104 (576)
+.+.+..+|++++
T Consensus 96 ~~~~~lA~GlDpe 108 (682)
T PTZ00348 96 LIEVWKAAGMDMD 108 (682)
T ss_pred HHHHHHHcCCCcc
Confidence 6677889999887
No 127
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=93.25 E-value=0.1 Score=51.90 Aligned_cols=68 Identities=22% Similarity=0.049 Sum_probs=42.2
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASK 386 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~ 386 (576)
+..+|.||...+. +-.-+....+...| ..++|.++.. +|+|||||.+|.+| ..+. -+++.++=.+.+.
T Consensus 154 l~~~G~DQ~~~i~-~~rd~a~r~~~~~~-~~l~~~ll~~l~G~KMSKS~~~~~~-i~l~---dsp~~i~~Ki~~a 222 (269)
T cd00805 154 LQLGGSDQRGNIT-LGRDLIRKLGYKKV-VGLTTPLLTGLDGGKMSKSEGNAIW-DPVL---DSPYDVYQKIRNA 222 (269)
T ss_pred eeEecHHHHHHHH-HHHHHHHHhCCCCc-EEEeeccccCCCCCcccCCCCCccc-ccCC---CCHHHHHHHHHcC
Confidence 7789999974332 21112333454433 4556666654 99999999999987 3332 3566776665553
No 128
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=92.51 E-value=0.07 Score=53.94 Aligned_cols=55 Identities=22% Similarity=0.011 Sum_probs=33.1
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCC----CCcEEeeeccEEe-CCc-cccccCCC-ccChhHH
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRK----LPNNIFVHGFMTI-NGK-KMSKSNKI-GISPLYY 369 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~----~p~~~~~~g~v~~-~g~-KMSKS~gn-~i~~~dl 369 (576)
+.++|.||...+... .-+....+.. .| ..+++.++.. +|. |||||.+| .|++.|-
T Consensus 152 ~~~~G~DQ~~~~~l~-rd~a~k~~~~~~~~~p-~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d~ 213 (292)
T PF00579_consen 152 LVPGGIDQRGHIELA-RDLARKFNYKEIFPKP-AGLTSPLLPGLDGQKKMSKSDPNSAIFLDDS 213 (292)
T ss_dssp EEEEEGGGHHHHHHH-HHHHHHHTHHSTSSS--EEEEETCBBSTTSSSBTTTTTTGGS-BTTTT
T ss_pred cccccchHHHHHHHH-HHHHhhhcccccccCc-hheeeccccccCCccccCccCCccEEEEecc
Confidence 788999996432211 1122333433 44 4555556665 888 99999999 8877664
No 129
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=92.28 E-value=0.2 Score=58.25 Aligned_cols=73 Identities=11% Similarity=0.115 Sum_probs=51.6
Q ss_pred CCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEec
Q psy2393 129 AKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKL 207 (576)
Q Consensus 129 ~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l 207 (576)
.+-...-+.....||+|++..+. ..||.||....---.|..||..+...+-..-.|..||.++...... -+++
T Consensus 657 ~~G~ieVEV~~rkCPkCG~~t~~----~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~--~i~~ 729 (1337)
T PRK14714 657 EGGVIEVEVGRRRCPSCGTETYE----NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRR--TINV 729 (1337)
T ss_pred cCCeEEEEEEEEECCCCCCcccc----ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccceE--EecH
Confidence 44445666778899999997654 3999999876444479999997665433355899999877644332 3455
No 130
>PLN02886 aminoacyl-tRNA ligase
Probab=90.18 E-value=1.6 Score=45.42 Aligned_cols=84 Identities=18% Similarity=0.292 Sum_probs=49.7
Q ss_pred EEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy2393 14 IFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRK 93 (576)
Q Consensus 14 ~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 93 (576)
.++.. --|+|.+||||..+.+ .-+.++++ | +++.+. =.|.|-.- ...++.++ +++...+.
T Consensus 48 ~v~sG--iqPSG~lHLGnylGai--~~~v~lQ~--~-----~~~~~~-IADlHAlt-------~~~~~~~l-r~~~~~~~ 107 (389)
T PLN02886 48 RVVSG--VQPTGSIHLGNYLGAI--KNWVALQE--T-----YDTFFC-VVDLHAIT-------LPHDPREL-GKATRSTA 107 (389)
T ss_pred eEEEE--ECCCCccHHHHHHHHH--HHHHHHhc--c-----CCEEEE-EecHHHhh-------CCCCHHHH-HHHHHHHH
Confidence 44444 3566999999987765 23333333 7 776433 24555442 12356544 44455678
Q ss_pred HHHhhcCcccc---ccccCCChhhHHH
Q psy2393 94 KYLDGFYIKFD---NWYSTDSIENIDL 117 (576)
Q Consensus 94 ~~l~~lgi~~d---~~~~t~~~~~~~~ 117 (576)
.++..+|++++ .|.++..+++.+.
T Consensus 108 a~~lA~GlDP~ks~if~QS~v~e~~eL 134 (389)
T PLN02886 108 AIYLACGIDPSKASVFVQSHVPAHAEL 134 (389)
T ss_pred HHHHHcCcCccceEEEEeCCCchhHHH
Confidence 88899999987 3555555555433
No 131
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=89.99 E-value=0.44 Score=42.73 Aligned_cols=70 Identities=17% Similarity=0.187 Sum_probs=42.5
Q ss_pred HHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCC---CH-HHHHHHHHHHHHHHHhhcCccccccccCCChhhHH
Q psy2393 41 WVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGM---TP-KEFINNISSNRKKYLDGFYIKFDNWYSTDSIENID 116 (576)
Q Consensus 41 l~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~---~~-~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~ 116 (576)
++|++|+.| |++.+.. +..+..|+..+.+.|. |. .++ ++.. ++|+.- .++... ....
T Consensus 18 LARwLRllG-----ydt~~~~--~~~d~~i~~i~~~e~rIllTRDr~L-------~~r~--k~g~~~-i~i~~~--s~~~ 78 (165)
T COG1656 18 LARWLRLLG-----YDTVYSS--NESDDEIILIAKKEGRILLTRDREL-------YKRA--KLGIKA-ILIRSD--SIEE 78 (165)
T ss_pred HHHHHHHcC-----Cceeeec--cCCcHHHHHHHhcCCeEEEeccHHH-------HHHh--hccCce-EEEeCC--CHHH
Confidence 799999999 9999997 3445566666776553 21 111 2221 455531 233333 4567
Q ss_pred HHHHHHHHHHhcCC
Q psy2393 117 LVQKIYDTLYNKAK 130 (576)
Q Consensus 117 ~v~~~~~~L~~~~g 130 (576)
++.+++.++- .++
T Consensus 79 Ql~e~~~~~~-l~~ 91 (165)
T COG1656 79 QLAEFLARLG-LKP 91 (165)
T ss_pred HHHHHHHHhc-cch
Confidence 7777777777 555
No 132
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=87.17 E-value=5.1 Score=44.52 Aligned_cols=111 Identities=14% Similarity=0.218 Sum_probs=77.2
Q ss_pred CCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcC---CCCCCcc---cCChHHHHHH
Q psy2393 373 GMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFK---GYLNMKW---VKDNDTFLSK 446 (576)
Q Consensus 373 g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~---~~~~~~~---~~d~~~l~~~ 446 (576)
||..|.++--+... +....++..+.+.+....+..-...+...++|+..++.+... +.+...+ +.| ..|...
T Consensus 541 g~~~dii~AVL~~~-~~~l~~i~~r~~al~~f~~~~~~~~l~~a~kRv~nIl~k~~~~~~~~v~~~Lf~~~~E-~~L~~a 618 (691)
T COG0751 541 GYRKDIIDAVLALN-PTDLLDIIARAEALQEFLDLPEAKALAAANKRVSNILAKAEKKLSGTVDPSLFEEDAE-KALFEA 618 (691)
T ss_pred CCCHHHHHHHHcCC-CCCHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHhcccccCCccChHHhcCHHH-HHHHHH
Confidence 68888888766654 222233333444444433333345666888999999887542 2232222 124 889999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcC
Q psy2393 447 LRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNK 485 (576)
Q Consensus 447 l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k 485 (576)
+..+...+..++..-++..++..|..+..-...|++...
T Consensus 619 ~~~~~~~~~~a~a~~~y~~al~~L~~L~~pId~FFd~Vm 657 (691)
T COG0751 619 LQALKPKVAEALAEKDYQDALAALAELRPPIDEFFDNVM 657 (691)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhHHHHhcCce
Confidence 999999999999999999999999999988999998865
No 133
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=86.38 E-value=1.8 Score=32.52 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=22.8
Q ss_pred HHHHH-HhhhHHHHHHHHHHHHHHHHH
Q psy2393 454 IQKYY-ENRNFNKVLYIVIEQTNFINI 479 (576)
Q Consensus 454 v~~a~-~~~~~~~~~~~l~~~~~~~n~ 479 (576)
+.++| ++++++.|+..|+++++..|+
T Consensus 2 F~~AmdDDfNT~~Ala~lf~l~~~~N~ 28 (63)
T PF09190_consen 2 FIEAMDDDFNTPEALAALFELVKEINR 28 (63)
T ss_dssp HHHHHCBTS-HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHhcCcHHHHHHHHHHHHHHHH
Confidence 56788 699999999999999999999
No 134
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases.
Probab=85.71 E-value=1.7 Score=31.54 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=25.5
Q ss_pred HHHHH-HhhhHHHHHHHHHHHHHHHHHhhh
Q psy2393 454 IQKYY-ENRNFNKVLYIVIEQTNFINIFFD 482 (576)
Q Consensus 454 v~~a~-~~~~~~~~~~~l~~~~~~~n~y~~ 482 (576)
+.+++ ++++++.|+..++++++..|.+++
T Consensus 2 f~~al~DD~NT~~Al~~l~~l~~~~N~~l~ 31 (56)
T smart00840 2 FEEAMDDDFNTPEALAVLFELAREINRLLL 31 (56)
T ss_pred hHHHhhcccCcHHHHHHHHHHHHHHHHHhh
Confidence 45677 699999999999999999999874
No 135
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=85.59 E-value=5.8 Score=44.69 Aligned_cols=112 Identities=12% Similarity=0.185 Sum_probs=73.6
Q ss_pred cCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcC---CCCCCcc---cCChHHHHH
Q psy2393 372 IGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFK---GYLNMKW---VKDNDTFLS 445 (576)
Q Consensus 372 ~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~---~~~~~~~---~~d~~~l~~ 445 (576)
.||..|.++--+... +....++.-..+.+.+.....-...+..++.|+..++.+... +.+...+ +.| +.|..
T Consensus 531 ~g~~~dvi~AVl~~~-~~~~~~~~~r~~aL~~~~~~~~~~~l~~~~kRv~NIl~k~~~~~~~~v~~~l~~~~~E-~~L~~ 608 (682)
T PRK01233 531 EGIRYDVIDAVLALR-PDDLADLDARVEALSAFRKLPEFKALAAANKRVSNILKKAEGKVSGEVDPALFEEPAE-KALYA 608 (682)
T ss_pred cCCCHHHHHHHHccC-CCCHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHhccccccCCccChhHcCCHHH-HHHHH
Confidence 478888888766432 111111111122223333233456777888999999877532 1222221 225 88888
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcC
Q psy2393 446 KLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNK 485 (576)
Q Consensus 446 ~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k 485 (576)
.+..+...+..++..-++..++..+..+....+.|++...
T Consensus 609 ~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~FFD~Vm 648 (682)
T PRK01233 609 ALEELKPKVEPALAAGDYQAALEALAALRPPVDAFFDNVM 648 (682)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHhhhhHHHHHhCCCe
Confidence 8888888888888888999999999999999999999865
No 136
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=84.99 E-value=0.8 Score=47.93 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=25.3
Q ss_pred EEEEcCCCCCCC-cccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecC
Q psy2393 14 IFVTTALPYANG-ELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICA 62 (576)
Q Consensus 14 ~~v~~~~P~~nG-~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g 62 (576)
+.++. .--||| .+||||+.+ .-.+.++++ .| ++|.++.|
T Consensus 31 ~~vy~-G~dPTg~~lHlGh~v~---l~~l~~lq~-~G-----~~~~ilig 70 (377)
T TIGR00234 31 IKLYV-GFDPTAPSLHLGHLVP---LLKLRDFQQ-AG-----HEVIVLLG 70 (377)
T ss_pred CEEEE-eeCCCCCCccHHHHHH---HHHHHHHHH-CC-----CcEEEEEe
Confidence 34444 347889 899999764 233445544 78 88877654
No 137
>PRK04023 DNA polymerase II large subunit; Validated
Probab=84.80 E-value=1.9 Score=49.34 Aligned_cols=77 Identities=16% Similarity=0.137 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccEE
Q psy2393 118 VQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPII 197 (576)
Q Consensus 118 v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~ 197 (576)
.+.+.+... .+|.+ .-+....+|++|++.. +.-.||.||....---.|..||....+ ..|.+||..+..
T Consensus 607 ~R~i~~A~~-~~g~~-eVEVg~RfCpsCG~~t----~~frCP~CG~~Te~i~fCP~CG~~~~~-----y~CPKCG~El~~ 675 (1121)
T PRK04023 607 TRDINKAAK-YKGTI-EVEIGRRKCPSCGKET----FYRRCPFCGTHTEPVYRCPRCGIEVEE-----DECEKCGREPTP 675 (1121)
T ss_pred cccHHHHHh-cCCce-eecccCccCCCCCCcC----CcccCCCCCCCCCcceeCccccCcCCC-----CcCCCCCCCCCc
Confidence 333444433 35555 4555678999999875 456899999875555689999886432 459999986653
Q ss_pred eeecceeEec
Q psy2393 198 KSSKHFFFKL 207 (576)
Q Consensus 198 ~~~~~~f~~l 207 (576)
. ...-+++
T Consensus 676 ~--s~~~i~l 683 (1121)
T PRK04023 676 Y--SKRKIDL 683 (1121)
T ss_pred c--ceEEecH
Confidence 3 3333555
No 138
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit. The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model.
Probab=83.65 E-value=7.7 Score=43.79 Aligned_cols=112 Identities=13% Similarity=0.205 Sum_probs=73.8
Q ss_pred cCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCC---CCCCcc---cCChHHHHH
Q psy2393 372 IGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKG---YLNMKW---VKDNDTFLS 445 (576)
Q Consensus 372 ~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~---~~~~~~---~~d~~~l~~ 445 (576)
+|+..|.++--+... +....++.-..+.+.+.....-...+..++.|+..++.+.... .+...+ +.| +.|..
T Consensus 541 ~g~~~dvi~AVl~~~-~~~~~~~~~r~~aL~~~~~~~~~~~l~~a~kRv~NIl~k~~~~~~~~v~~~l~~~~~E-~~L~~ 618 (691)
T TIGR00211 541 EGIDVDVIQAVLARR-ETDPADFDARAQALSHFRDLPKAEALAAANKRVANILKKGNPVLSSEIQANLFKEPKE-KALFE 618 (691)
T ss_pred CCCCHHHHHHHHccC-CCCHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHhcccccccCccChhHcCCHHH-HHHHH
Confidence 478888888776432 2111111112232333333334567778899999998875321 122221 224 78888
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcC
Q psy2393 446 KLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNK 485 (576)
Q Consensus 446 ~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k 485 (576)
.+..+...+...+..-++..++..+..+....+.|++...
T Consensus 619 ~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~FFD~Vm 658 (691)
T TIGR00211 619 AVLAIKMNAQESFESGDYETALEALAELRAPVDEFFDSVM 658 (691)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHhhhHHHHHhCCCE
Confidence 8888877778878777999999999999999999999866
No 139
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=83.57 E-value=1.5 Score=43.72 Aligned_cols=71 Identities=20% Similarity=0.178 Sum_probs=44.5
Q ss_pred CCCCC-cccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcc---cHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy2393 21 PYANG-ELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAH---GAAIMIAAEKAGMTPKEFINNISSNRKKYL 96 (576)
Q Consensus 21 P~~nG-~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~---G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 96 (576)
--|+| .+||||..+. -.+.++++. | ++|.+..| |.| |.|--...++.+.+++++ ++....+..++
T Consensus 7 ~~PTg~~lHLG~~~~~---~~~~~lq~~-g-----~~~~ilI~-D~~a~~~~~~~~~~~r~~~~~~~i-~~~~~~~~~~~ 75 (269)
T cd00805 7 FDPTAPSLHLGHLVPL---MKLRDFQQA-G-----HEVIVLIG-DATAMIGDPSGKSEERKLLDLELI-RENAKYYKKQL 75 (269)
T ss_pred eCCCCCcccHHHHHHH---HHHHHHHHC-C-----CeEEEEEC-CCeeecCCCCCccccccCCCHHHH-HHHHHHHHHHH
Confidence 46779 8999997753 356666664 8 88776654 222 333222233344566544 55566788888
Q ss_pred hhcCcc
Q psy2393 97 DGFYIK 102 (576)
Q Consensus 97 ~~lgi~ 102 (576)
..+|.+
T Consensus 76 ~a~g~~ 81 (269)
T cd00805 76 KAILDF 81 (269)
T ss_pred HHHHcc
Confidence 888875
No 140
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=83.33 E-value=2.4 Score=42.71 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=25.2
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecC
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICA 62 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g 62 (576)
+++.|++| --|+|.+||||+.... .+.++++ .| ++|.++.|
T Consensus 4 ~~~~~y~G-~~PTg~lHlG~l~~~~---~~~~lq~-~g-----~~~~i~ia 44 (292)
T PF00579_consen 4 KPFRVYTG-IDPTGDLHLGHLVPIM---KLIWLQK-AG-----FKVIILIA 44 (292)
T ss_dssp SSEEEEEE-EESSSS-BHHHHHHHH---HHHHHHH-TT-----SEEEEEEE
T ss_pred CCcEEEEe-ECCCCcccchHHHHHH---HHHHHHh-cC-----CccceEec
Confidence 34444443 3677999999887753 2333333 88 88887764
No 141
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=82.98 E-value=4.2 Score=42.47 Aligned_cols=77 Identities=16% Similarity=0.161 Sum_probs=45.8
Q ss_pred CCCCCcccchHhhhHHHHHHHHHHHh-hcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q psy2393 21 PYANGELHIGHIMEYIQADIWVRFQC-MQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGF 99 (576)
Q Consensus 21 P~~nG~lHiGH~~~~i~~Dvl~R~~~-~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 99 (576)
--|+|.+||||..+.+. .+.. ..| +++.+. =.|.|=.-. ...++.+ .+.....+..++...
T Consensus 9 iqPSG~~HLGnylG~ik-----~wv~lq~~-----~~~~~~-IADlHAlt~------~~~d~~~-ir~~~~~~~a~~lA~ 70 (398)
T PRK12283 9 MRPTGRLHLGHYHGVLK-----NWVKLQHE-----YECFFF-VADWHALTT------HYETPEV-IEKNVWDMVIDWLAA 70 (398)
T ss_pred eCCCCcchHHHHHHHHH-----HHHHHhcC-----CcEEEE-eecHHHHhC------CCCCHHH-HHHHHHHHHHHHHHc
Confidence 36679999999888542 3333 246 665433 244443321 0124544 345556688899999
Q ss_pred Ccccc---ccccCCChhhH
Q psy2393 100 YIKFD---NWYSTDSIENI 115 (576)
Q Consensus 100 gi~~d---~~~~t~~~~~~ 115 (576)
|++++ .|.++..++|.
T Consensus 71 GlDP~k~~if~QS~v~eh~ 89 (398)
T PRK12283 71 GVDPAQATLFIQSKVPEHA 89 (398)
T ss_pred CCCccceEEEECCCchHHH
Confidence 99986 45555555553
No 142
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=82.21 E-value=0.75 Score=47.23 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=41.8
Q ss_pred EEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy2393 14 IFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRK 93 (576)
Q Consensus 14 ~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 93 (576)
.+++.- -|+|.+||||..+.+.. .+++...| . +. ++=.|.|..-. ...++.++ +++..+..
T Consensus 4 ~v~sG~--~PTG~~HLGn~l~~~~~---~~~lQ~~~-----~-~~-i~IaD~ha~~~------~~~~~~~i-~~~~~~~~ 64 (333)
T PRK12282 4 IILTGD--RPTGKLHLGHYVGSLKN---RVALQNEH-----E-QF-VLIADQQALTD------NAKNPEKI-RRNILEVA 64 (333)
T ss_pred EEEEee--CCCCcchHHHHHHHHHH---HHHHHhCC-----C-EE-EEEccchhHhC------CCCCHHHH-HHHHHHHH
Confidence 344443 45699999998775432 22344456 5 43 33356663221 12355544 45556677
Q ss_pred HHHhhcCcccc
Q psy2393 94 KYLDGFYIKFD 104 (576)
Q Consensus 94 ~~l~~lgi~~d 104 (576)
.++..+|++++
T Consensus 65 ~~~lA~G~dp~ 75 (333)
T PRK12282 65 LDYLAVGIDPA 75 (333)
T ss_pred HHHHHhCcChh
Confidence 78888999886
No 143
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=81.13 E-value=11 Score=44.18 Aligned_cols=110 Identities=9% Similarity=0.153 Sum_probs=69.6
Q ss_pred cCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCcc---cCChHHHHHHHH
Q psy2393 372 IGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNMKW---VKDNDTFLSKLR 448 (576)
Q Consensus 372 ~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~---~~d~~~l~~~l~ 448 (576)
+|+..|.++--+... +....++.-..+.+.+.....-...+..++.|+..++.+.....+...+ +.| +.|.+.+.
T Consensus 856 ~G~~~dvI~AVl~~~-~~~~~~~~~r~~aL~~f~~~~~~~~l~~a~kRv~NIl~k~~~~~vd~~Lf~~~~E-~~L~~a~~ 933 (1000)
T PRK14908 856 LGFDKDEIAAVLPDA-CKNPAEADKTAQALQELKSTEIFAEIAAALNRLKRILASLSFSVTDASLLLEPAE-LNLKQALD 933 (1000)
T ss_pred cCCCHHHHHHHHccC-CCCHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHhhcCCCccChhhcCCHHH-HHHHHHHH
Confidence 479999999776532 1111122222222333333344667788899999998875322222222 124 67777777
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcC
Q psy2393 449 VVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNK 485 (576)
Q Consensus 449 ~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k 485 (576)
.+...+... .-++..++..+..+....+.|++...
T Consensus 934 ~~~~~~~~~--~~dy~~al~~La~L~~~Id~FFD~Vm 968 (1000)
T PRK14908 934 AFREELTEL--PIDLKDYVAAAAELPQAVNTFFDEVL 968 (1000)
T ss_pred HHHHHHHHh--hhhHHHHHHHHHhhhhHHHHHhCCCE
Confidence 766665555 45889999999999999999999865
No 144
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=81.11 E-value=0.67 Score=48.29 Aligned_cols=42 Identities=29% Similarity=0.273 Sum_probs=26.5
Q ss_pred CCCcEEee-eccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHh
Q psy2393 338 KLPNNIFV-HGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIAS 385 (576)
Q Consensus 338 ~~p~~~~~-~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~ 385 (576)
+.|..++. +.+|.. +|+|||||.+|.|.+.| +++.++=-+.+
T Consensus 245 ~~P~~~~~~~~~I~gLdg~KMSKS~~n~I~L~D------s~~~I~kKI~~ 288 (398)
T PRK12283 245 PEPQALLTEASKMPGLDGQKMSKSYGNTIGLRE------DPESVTKKIRT 288 (398)
T ss_pred CCCcccccCCCcccCCCCCcCCCCCCCeeeCcC------CHHHHHHHHHh
Confidence 55654332 344544 88999999999887654 34555554444
No 145
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=79.04 E-value=1.6 Score=39.11 Aligned_cols=115 Identities=14% Similarity=0.046 Sum_probs=58.5
Q ss_pred HHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCC---CH-HHHHHHHHHHHHHHHhhcCccccccccCCChhhHH
Q psy2393 41 WVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGM---TP-KEFINNISSNRKKYLDGFYIKFDNWYSTDSIENID 116 (576)
Q Consensus 41 l~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~---~~-~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~ 116 (576)
++|+||+.| ++|.+..+. .+..|...|.++|. |. .++.+ ....-+. -.+. + +....+
T Consensus 12 Lar~LR~lG-----~Dt~~~~~~--~D~~il~~A~~e~RillTrd~~l~~--------~~~~~~~--~~li-~-~~~~~~ 72 (147)
T PF01927_consen 12 LARWLRLLG-----YDTLYSRDI--DDDEILELAREEGRILLTRDRDLLK--------RRRVSGG--VILI-R-SDDPEE 72 (147)
T ss_pred HHHHHHHCC-----CcEEEeCCC--ChHHHHHHhhhCCeEEEECCHHHHH--------HhhccCC--EEEE-c-CCCHHH
Confidence 689999999 999999866 44556666776664 11 11211 1111111 0122 2 223455
Q ss_pred HHHHHHHHHHhcCCcEEecceeeeecCCCCccc---cccceeccCCCCCCCCC-CCCccccCCCcC
Q psy2393 117 LVQKIYDTLYNKAKLIINKKINQFFDPIKNIFL---PDRYIKGECPICNAKDQ-YGDFCECCSSIY 178 (576)
Q Consensus 117 ~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l---~~~~v~~~~p~c~~~~~-~g~~c~~cg~~~ 178 (576)
...+++..+. +-.......--|+.|+.-| +..+|.+..|.-..... .--.|..||+.|
T Consensus 73 QL~ev~~~~~----l~~~~~~~~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~kiy 134 (147)
T PF01927_consen 73 QLREVLERFG----LKLRLDPIFSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKIY 134 (147)
T ss_pred HHHHHHHHcC----CccccCCCCCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCCEe
Confidence 6666665554 2222222233588888766 33455555553322110 012477777754
No 146
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=78.95 E-value=1.4 Score=25.89 Aligned_cols=20 Identities=35% Similarity=0.914 Sum_probs=10.8
Q ss_pred CCCCCCCCC-CCCccccCCCc
Q psy2393 158 CPICNAKDQ-YGDFCECCSSI 177 (576)
Q Consensus 158 ~p~c~~~~~-~g~~c~~cg~~ 177 (576)
||.|+.+-. ...+|..||..
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CcccCCCCCCcCcchhhhCCc
Confidence 566665432 23567766653
No 147
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=77.25 E-value=1.7 Score=29.86 Aligned_cols=29 Identities=24% Similarity=0.753 Sum_probs=16.9
Q ss_pred cCCCCCCCC-----CCCC-ccccCCCcCCCCccCC
Q psy2393 157 ECPICNAKD-----QYGD-FCECCSSIYTPTKLIN 185 (576)
Q Consensus 157 ~~p~c~~~~-----~~g~-~c~~cg~~~~~~~l~~ 185 (576)
.||.|+... ..|+ .|..||..++...+..
T Consensus 2 ~Cp~Cg~~~~~~D~~~g~~vC~~CG~Vl~e~~i~~ 36 (43)
T PF08271_consen 2 KCPNCGSKEIVFDPERGELVCPNCGLVLEENIIDE 36 (43)
T ss_dssp SBTTTSSSEEEEETTTTEEEETTT-BBEE-TTBSC
T ss_pred CCcCCcCCceEEcCCCCeEECCCCCCEeecccccC
Confidence 588888753 2343 6888888766554433
No 148
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=76.47 E-value=1.9 Score=25.52 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=13.9
Q ss_pred cCCCCccccccc--eeccCCCCC
Q psy2393 142 DPIKNIFLPDRY--IKGECPICN 162 (576)
Q Consensus 142 ~~~~~~~l~~~~--v~~~~p~c~ 162 (576)
|.+|+..|+.++ |...||.||
T Consensus 1 C~sC~~~i~~r~~~v~f~CPnCG 23 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPFPCPNCG 23 (24)
T ss_pred CccCCCcccCcccCceEeCCCCC
Confidence 456666666654 667788776
No 149
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=75.96 E-value=1.9 Score=48.13 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=26.4
Q ss_pred eeecCCCCccccccceeccCCCCCCCCCC-CCccccCCCcCC
Q psy2393 139 QFFDPIKNIFLPDRYIKGECPICNAKDQY-GDFCECCSSIYT 179 (576)
Q Consensus 139 ~~~~~~~~~~l~~~~v~~~~p~c~~~~~~-g~~c~~cg~~~~ 179 (576)
.-||++|++.+.. ..||.||..-.. ..+|.+||....
T Consensus 15 akFC~~CG~~l~~----~~Cp~CG~~~~~~~~fC~~CG~~~~ 52 (645)
T PRK14559 15 NRFCQKCGTSLTH----KPCPQCGTEVPVDEAHCPNCGAETG 52 (645)
T ss_pred CccccccCCCCCC----CcCCCCCCCCCcccccccccCCccc
Confidence 3478888887753 469999887544 368999987643
No 150
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=75.42 E-value=1.9 Score=26.06 Aligned_cols=21 Identities=33% Similarity=0.781 Sum_probs=11.7
Q ss_pred cCCCCCCCC-CCCCccccCCCc
Q psy2393 157 ECPICNAKD-QYGDFCECCSSI 177 (576)
Q Consensus 157 ~~p~c~~~~-~~g~~c~~cg~~ 177 (576)
.||.|+... ....+|..||..
T Consensus 4 ~Cp~Cg~~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 4 FCPNCGAEIDPDAKFCPNCGAK 25 (26)
T ss_pred CCcccCCcCCcccccChhhCCC
Confidence 466666642 233567777653
No 151
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=72.67 E-value=15 Score=32.37 Aligned_cols=38 Identities=8% Similarity=-0.084 Sum_probs=24.0
Q ss_pred ChhhHHHHHHHHHHHHhcCCcEEec-------ceeeeecCCCCcccc
Q psy2393 111 SIENIDLVQKIYDTLYNKAKLIINK-------KINQFFDPIKNIFLP 150 (576)
Q Consensus 111 ~~~~~~~v~~~~~~L~~~~g~iy~~-------~~~~~~~~~~~~~l~ 150 (576)
+.-+.+..+..|..+. +|-+.++ ....++|+.|+...+
T Consensus 37 s~V~pe~L~fafe~l~--~gt~~ega~L~i~~~p~~~~C~~CG~~~~ 81 (135)
T PRK03824 37 QDVDKEIVEFALNELL--KGTILEGAEIIFEEEEAVLKCRNCGNEWS 81 (135)
T ss_pred hhhhHHHHHHHHHHHH--cCCcccCCEEEEEecceEEECCCCCCEEe
Confidence 3345677777787765 4555443 346788888875444
No 152
>PLN02886 aminoacyl-tRNA ligase
Probab=72.31 E-value=31 Score=36.10 Aligned_cols=17 Identities=47% Similarity=0.473 Sum_probs=12.0
Q ss_pred CC-ccccccCC---CccChhH
Q psy2393 352 NG-KKMSKSNK---IGISPLY 368 (576)
Q Consensus 352 ~g-~KMSKS~g---n~i~~~d 368 (576)
+| +|||||.. |.|.+.|
T Consensus 247 ~g~~KMSKS~p~~~s~I~L~D 267 (389)
T PLN02886 247 DGTSKMSKSAPSDQSRINLLD 267 (389)
T ss_pred CCCCcCCCCCCCCCCeEEecC
Confidence 44 59999985 5776544
No 153
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=70.60 E-value=8.8 Score=40.20 Aligned_cols=54 Identities=19% Similarity=0.103 Sum_probs=28.7
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccE-EeCCccccccCCCccChhH
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFM-TINGKKMSKSNKIGISPLY 368 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v-~~~g~KMSKS~gn~i~~~d 368 (576)
+.++|.||.+ |-..=.-+....+... ...++.-++ ..+|.|||||.||.||..+
T Consensus 180 i~~gG~DQ~~-ni~~g~dLar~~~~~~-~~~~t~pLl~~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 180 LQIGGSDQWG-NIRKGRDLIRRNLPSL-GFGLTVPLLTPADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred eeEecchhHH-HHHHHHHHHHHhcCCC-ceeeceeeecCCCCCCccCCCCCcccCCc
Confidence 8889999952 2211111112222111 122222222 2378999999999887754
No 154
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=67.73 E-value=28 Score=35.76 Aligned_cols=55 Identities=22% Similarity=0.114 Sum_probs=30.1
Q ss_pred EEEeeecCcchhHhHHHHHHHhcC-------CCCCcEEee-eccEEe-CC-ccccccCCCccChhH
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSG-------RKLPNNIFV-HGFMTI-NG-KKMSKSNKIGISPLY 368 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~-------~~~p~~~~~-~g~v~~-~g-~KMSKS~gn~i~~~d 368 (576)
+..+|.||..++... --+....+ ...|..++. +-++.. +| +|||||.+|.|.+.|
T Consensus 145 ~vpvG~DQ~~h~~la-RdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D 209 (333)
T PRK12282 145 LVPVGDDQLPMIEQT-REIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGKAKMSKSLGNAIYLSD 209 (333)
T ss_pred EEEeccccHHHHHHH-HHHHHHHhhhcCCccccCchhcccCCCcccCCCCCCcCCCCCCCeeeeeC
Confidence 778899997543211 11222222 123443333 233333 66 799999999887654
No 155
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=64.36 E-value=2.2 Score=48.04 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccEE
Q psy2393 157 ECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPII 197 (576)
Q Consensus 157 ~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~ 197 (576)
+||.||....--..|..||.... ...|.+||.....
T Consensus 669 ~Cp~CG~~T~~~~~Cp~C~~~~~-----~~~C~~C~~~~~~ 704 (900)
T PF03833_consen 669 RCPECGSHTEPVYVCPDCGIEVE-----EDECPKCGRETTS 704 (900)
T ss_dssp -----------------------------------------
T ss_pred cCcccCCccccceeccccccccC-----ccccccccccCcc
Confidence 45555554433444555555433 3478888876443
No 156
>PRK05978 hypothetical protein; Provisional
Probab=63.35 E-value=4.9 Score=35.84 Aligned_cols=26 Identities=31% Similarity=0.908 Sum_probs=17.5
Q ss_pred eccCCCCCCCCCC------CCccccCCCcCCC
Q psy2393 155 KGECPICNAKDQY------GDFCECCSSIYTP 180 (576)
Q Consensus 155 ~~~~p~c~~~~~~------g~~c~~cg~~~~~ 180 (576)
.++||.|+.-+-+ .+.|+.||..++.
T Consensus 33 ~grCP~CG~G~LF~g~Lkv~~~C~~CG~~~~~ 64 (148)
T PRK05978 33 RGRCPACGEGKLFRAFLKPVDHCAACGEDFTH 64 (148)
T ss_pred cCcCCCCCCCcccccccccCCCccccCCcccc
Confidence 4689999876543 2568888776553
No 157
>PF12773 DZR: Double zinc ribbon
Probab=63.29 E-value=8 Score=27.30 Aligned_cols=11 Identities=27% Similarity=0.851 Sum_probs=5.0
Q ss_pred CccccCCCcCC
Q psy2393 169 DFCECCSSIYT 179 (576)
Q Consensus 169 ~~c~~cg~~~~ 179 (576)
.+|..||..+.
T Consensus 13 ~fC~~CG~~l~ 23 (50)
T PF12773_consen 13 KFCPHCGTPLP 23 (50)
T ss_pred cCChhhcCChh
Confidence 34444444443
No 158
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=62.67 E-value=11 Score=34.21 Aligned_cols=45 Identities=16% Similarity=0.304 Sum_probs=31.0
Q ss_pred ChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCC
Q psy2393 111 SIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKD 165 (576)
Q Consensus 111 ~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~ 165 (576)
...|.......+..+. +|. +|-|+.|+-..-+ +--+.||.|+++.
T Consensus 115 Ek~H~~~~~~~Le~~~--~~~-------~~vC~vCGy~~~g-e~P~~CPiCga~k 159 (166)
T COG1592 115 EKRHAEMFRGLLERLE--EGK-------VWVCPVCGYTHEG-EAPEVCPICGAPK 159 (166)
T ss_pred HHHHHHHHHHHHHhhh--cCC-------EEEcCCCCCcccC-CCCCcCCCCCChH
Confidence 3456666666666665 333 8889999877766 7777888888753
No 159
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=62.20 E-value=17 Score=30.81 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=32.4
Q ss_pred cccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC----------CCChhHHHHHHHHHh
Q psy2393 187 YSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK----------RLQPEIVNKIKEWLE 239 (576)
Q Consensus 187 ~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~----------~~~~~~~~~~~~~l~ 239 (576)
+|..|++.++=.=.-.||..|+ ++-.+.+..++..++ .--|.+++++.+.+.
T Consensus 14 ~C~~C~t~i~G~F~l~~~~~L~-~E~~~Fi~~Fi~~rGnlKe~e~~lgiSYPTvR~rLd~ii~ 75 (113)
T PF09862_consen 14 KCPSCGTEIEGEFELPWFARLS-PEQLEFIKLFIKNRGNLKEMEKELGISYPTVRNRLDKIIE 75 (113)
T ss_pred EcCCCCCEEEeeeccchhhcCC-HHHHHHHHHHHHhcCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 5666677777666777888884 233445555522221 245778888888776
No 160
>KOG2713|consensus
Probab=59.92 E-value=40 Score=33.34 Aligned_cols=90 Identities=16% Similarity=0.166 Sum_probs=54.4
Q ss_pred CCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcC
Q psy2393 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFY 100 (576)
Q Consensus 21 P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 100 (576)
--|+|.+|||+..+.+-.-+=---....| -.|.|.. .|-|-.- ....|. ..++..-.+...+-.-|
T Consensus 20 IQPTG~~HLGNYLGai~~Wv~LQ~~~d~~-----~~~~f~v-vDlHaIT-------vp~dp~-~lrq~~~dm~A~lLAcG 85 (347)
T KOG2713|consen 20 IQPTGIPHLGNYLGAIKPWVQLQNEYDKN-----ILVLFSV-VDLHAIT-------VPQDPA-ELRQATHDMAASLLACG 85 (347)
T ss_pred cCCCCCchhhhhhhhhhHHHHHHHHhcCC-----ceEEEEE-eeceeec-------CCCChH-HHHHHHHHHHHHHHHhc
Confidence 46679999999999876554433334445 4454432 4444322 344555 34566667778888899
Q ss_pred cccc---ccccCCChhhHHHHHHHHHHH
Q psy2393 101 IKFD---NWYSTDSIENIDLVQKIYDTL 125 (576)
Q Consensus 101 i~~d---~~~~t~~~~~~~~v~~~~~~L 125 (576)
|++. .|++..-+.|.+.. |++..|
T Consensus 86 Idp~Ks~lF~QS~Vpqh~el~-WlLssl 112 (347)
T KOG2713|consen 86 IDPEKSSLFVQSDVPQHAELS-WLLSSL 112 (347)
T ss_pred cCcccceeeeeccchHHHHHH-HHHHhc
Confidence 9886 46665556665543 343333
No 161
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=59.61 E-value=6.7 Score=46.36 Aligned_cols=36 Identities=22% Similarity=0.469 Sum_probs=27.9
Q ss_pred cCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccEE
Q psy2393 157 ECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPII 197 (576)
Q Consensus 157 ~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~ 197 (576)
.||.||... +..+|+.||....+ ..+|..||..+..
T Consensus 669 kCPkCG~~t-~~~fCP~CGs~te~----vy~CPsCGaev~~ 704 (1337)
T PRK14714 669 RCPSCGTET-YENRCPDCGTHTEP----VYVCPDCGAEVPP 704 (1337)
T ss_pred ECCCCCCcc-ccccCcccCCcCCC----ceeCccCCCccCC
Confidence 599999975 44599999998643 2389999997654
No 162
>PF01783 Ribosomal_L32p: Ribosomal L32p protein family; InterPro: IPR002677 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L32p is part of the 50S ribosomal subunit. This family is found in both prokaryotes and eukaryotes. Ribosomal protein L32 of yeast binds to and regulates the splicing and the translation of the transcript of its own gene [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3PYT_2 3F1F_5 3PYV_2 3D5B_5 3MRZ_2 3D5D_5 3F1H_5 1VSP_Y 3PYR_2 3MS1_2 ....
Probab=59.57 E-value=8.7 Score=28.09 Aligned_cols=25 Identities=24% Similarity=0.705 Sum_probs=16.5
Q ss_pred cCCCCCCCCCCCCccccCCCcCCCCc
Q psy2393 157 ECPICNAKDQYGDFCECCSSIYTPTK 182 (576)
Q Consensus 157 ~~p~c~~~~~~g~~c~~cg~~~~~~~ 182 (576)
.||.||...-.-..|..|| +|...+
T Consensus 28 ~c~~cg~~~~~H~vc~~cG-~y~~r~ 52 (56)
T PF01783_consen 28 KCPNCGEPKLPHRVCPSCG-YYKGRQ 52 (56)
T ss_dssp ESSSSSSEESTTSBCTTTB-BSSSSS
T ss_pred eeccCCCEecccEeeCCCC-eECCEE
Confidence 5777777665667788888 444433
No 163
>KOG2145|consensus
Probab=58.31 E-value=7.2 Score=38.32 Aligned_cols=34 Identities=15% Similarity=0.472 Sum_probs=27.2
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHh
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQC 46 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~ 46 (576)
+.+++||+++|-=--++.+||||+-+.+ +.+|+.
T Consensus 81 eq~kpFyLYTGRGpSS~smHlGHliPFi----ftKwlQ 114 (397)
T KOG2145|consen 81 EQGKPFYLYTGRGPSSESMHLGHLIPFI----FTKWLQ 114 (397)
T ss_pred HcCCceEEEeCCCCCccccccccchhHH----HHHHHH
Confidence 5678999998876678999999998875 456665
No 164
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=58.15 E-value=8.3 Score=43.22 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=27.3
Q ss_pred ecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccE
Q psy2393 141 FDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPI 196 (576)
Q Consensus 141 ~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~ 196 (576)
.||.|+...++.- --||.||.+-. ...|..||..+.+. ..+|..||+++-
T Consensus 3 ~Cp~Cg~~n~~~a--kFC~~CG~~l~-~~~Cp~CG~~~~~~---~~fC~~CG~~~~ 52 (645)
T PRK14559 3 ICPQCQFENPNNN--RFCQKCGTSLT-HKPCPQCGTEVPVD---EAHCPNCGAETG 52 (645)
T ss_pred cCCCCCCcCCCCC--ccccccCCCCC-CCcCCCCCCCCCcc---cccccccCCccc
Confidence 3666665544311 13666665421 13577777654432 347888887653
No 165
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=57.34 E-value=8.8 Score=35.10 Aligned_cols=23 Identities=17% Similarity=0.106 Sum_probs=19.0
Q ss_pred cCCcEEecceeeeecCCCCcccc
Q psy2393 128 KAKLIINKKINQFFDPIKNIFLP 150 (576)
Q Consensus 128 ~~g~iy~~~~~~~~~~~~~~~l~ 150 (576)
+++-.+.++.+.|||.+|+-.+.
T Consensus 3 kk~~~~~gk~~iyWCe~cNlPl~ 25 (202)
T COG5270 3 KKMPVVLGKFPIYWCEKCNLPLL 25 (202)
T ss_pred cccceeecccceeehhhCCCccc
Confidence 56778888999999999987665
No 166
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=51.16 E-value=10 Score=35.06 Aligned_cols=18 Identities=39% Similarity=0.554 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhcCCcEE
Q psy2393 115 IDLVQKIYDTLYNKAKLII 133 (576)
Q Consensus 115 ~~~v~~~~~~L~~~~g~iy 133 (576)
...+++++.+|+ +.|++.
T Consensus 50 ~~~VRk~L~~L~-e~gLv~ 67 (178)
T PRK06266 50 LNTVRKILYKLY-DARLAD 67 (178)
T ss_pred HHHHHHHHHHHH-HCCCeE
Confidence 567889999999 999986
No 167
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=49.93 E-value=12 Score=38.17 Aligned_cols=38 Identities=18% Similarity=0.335 Sum_probs=23.5
Q ss_pred eeccCCCCCCCC-----CCC-CccccCCCcCCCCccCCCcccCC
Q psy2393 154 IKGECPICNAKD-----QYG-DFCECCSSIYTPTKLINPYSILS 191 (576)
Q Consensus 154 v~~~~p~c~~~~-----~~g-~~c~~cg~~~~~~~l~~p~~~~~ 191 (576)
-...||.|+... ..| ..|.+||..++..-+...-.||+
T Consensus 10 ~~~~Cp~Cg~~~iv~d~~~Ge~vC~~CG~Vl~e~~iD~g~EWR~ 53 (310)
T PRK00423 10 EKLVCPECGSDKLIYDYERGEIVCADCGLVIEENIIDQGPEWRA 53 (310)
T ss_pred cCCcCcCCCCCCeeEECCCCeEeecccCCcccccccccCCCccC
Confidence 345688888632 224 36999999877655544455554
No 168
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=49.09 E-value=11 Score=42.81 Aligned_cols=69 Identities=14% Similarity=0.178 Sum_probs=37.8
Q ss_pred ecceeeeecCCCCccccccceeccCCCCCCCC-----CCCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecC
Q psy2393 134 NKKINQFFDPIKNIFLPDRYIKGECPICNAKD-----QYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLS 208 (576)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~-----~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~ 208 (576)
+++.+...|..|+... +||.|...= ...-.|.-||..-. +--.|..||+. .++.. -.+
T Consensus 430 RGys~~l~C~~Cg~v~-------~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~----~p~~Cp~Cgs~-~L~~~-----G~G 492 (730)
T COG1198 430 RGYAPLLLCRDCGYIA-------ECPNCDSPLTLHKATGQLRCHYCGYQEP----IPQSCPECGSE-HLRAV-----GPG 492 (730)
T ss_pred CCccceeecccCCCcc-------cCCCCCcceEEecCCCeeEeCCCCCCCC----CCCCCCCCCCC-eeEEe-----ccc
Confidence 4566777888887432 477776542 12345777776521 22367777776 22221 112
Q ss_pred chhhHHHHHHh
Q psy2393 209 DKRCIDFLRKW 219 (576)
Q Consensus 209 ~~~~~~~l~~~ 219 (576)
.++..+.+.+.
T Consensus 493 terieeeL~~~ 503 (730)
T COG1198 493 TERIEEELKRL 503 (730)
T ss_pred HHHHHHHHHHH
Confidence 25566666665
No 169
>KOG2623|consensus
Probab=46.60 E-value=20 Score=36.92 Aligned_cols=22 Identities=23% Similarity=0.135 Sum_probs=18.3
Q ss_pred cEEe-CCccccccCCCccChhHH
Q psy2393 348 FMTI-NGKKMSKSNKIGISPLYY 369 (576)
Q Consensus 348 ~v~~-~g~KMSKS~gn~i~~~dl 369 (576)
.++. .|.|+-||.||+||++--
T Consensus 265 LlTsstG~KlGKSaGnAvWLdp~ 287 (467)
T KOG2623|consen 265 LLTSSTGAKLGKSAGNAVWLDPS 287 (467)
T ss_pred eEecCcchhhccCCCceEEecCc
Confidence 4555 899999999999998763
No 170
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=46.56 E-value=12 Score=27.41 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhcCCCCCCcceEEecCCC--ccc-HHHHHHHHHcCCCHHHHHHHH
Q psy2393 36 IQADIWVRFQCMQQDNGKSRQVYFICADD--AHG-AAIMIAAEKAGMTPKEFINNI 88 (576)
Q Consensus 36 i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D--~~G-~~i~~~a~~~g~~~~~~~~~~ 88 (576)
.++|+++.+-+... |+.-.|+| |+| .++...+++.|+++.++.+..
T Consensus 4 tVgeiv~~~p~~a~-------vf~~~gIDfCCgG~~~L~eA~~~~~ld~~~vl~~L 52 (56)
T PF04405_consen 4 TVGEIVAEDPRAAR-------VFRKYGIDFCCGGNRSLEEACEEKGLDPEEVLEEL 52 (56)
T ss_pred CHHHHHHHChHHHH-------HHHHcCCcccCCCCchHHHHHHHcCCCHHHHHHHH
Confidence 45666665444333 44445555 567 577788888999998876554
No 171
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=46.38 E-value=31 Score=31.03 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=30.0
Q ss_pred HHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhhh
Q psy2393 448 RVVSSSIQKYY-ENRNFNKVLYIVIEQTNFINIFFD 482 (576)
Q Consensus 448 ~~~~~~v~~a~-~~~~~~~~~~~l~~~~~~~n~y~~ 482 (576)
..+.+.+.++| ++++++.|+..|+++++..|.+++
T Consensus 32 ~~~~~~f~~Al~DDlNt~~Ala~l~~l~k~~n~~~~ 67 (156)
T cd07963 32 EPFAERFIAAMDDDFNTPEALAVLFELAREINRLKK 67 (156)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 34557788889 699999999999999999998874
No 172
>PRK00420 hypothetical protein; Validated
Probab=45.90 E-value=14 Score=31.33 Aligned_cols=22 Identities=23% Similarity=0.600 Sum_probs=12.6
Q ss_pred cCCCCCCCCC----CCCccccCCCcC
Q psy2393 157 ECPICNAKDQ----YGDFCECCSSIY 178 (576)
Q Consensus 157 ~~p~c~~~~~----~g~~c~~cg~~~ 178 (576)
.||.|+.+-. .-.+|+.||..+
T Consensus 25 ~CP~Cg~pLf~lk~g~~~Cp~Cg~~~ 50 (112)
T PRK00420 25 HCPVCGLPLFELKDGEVVCPVHGKVY 50 (112)
T ss_pred CCCCCCCcceecCCCceECCCCCCee
Confidence 5777765422 124677777754
No 173
>KOG2144|consensus
Probab=44.84 E-value=7.9 Score=38.10 Aligned_cols=67 Identities=18% Similarity=0.204 Sum_probs=41.8
Q ss_pred CCCCCcccchHhhhHH-HHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCH----HHHHHHHHHHHHHH
Q psy2393 21 PYANGELHIGHIMEYI-QADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTP----KEFINNISSNRKKY 95 (576)
Q Consensus 21 P~~nG~lHiGH~~~~i-~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~----~~~~~~~~~~~~~~ 95 (576)
--|+|.+|+|-.-..+ ++|++. .| -+|..... |-|+- .-+-.-| ...+.+|...|++.
T Consensus 41 taptGrpHiay~vpm~kiadflk-----AG-----C~VtIl~A-D~hA~------LdNmkap~e~~~~rv~yYe~~Ik~~ 103 (360)
T KOG2144|consen 41 TAPTGRPHIAYFVPMMKIADFLK-----AG-----CEVTILFA-DLHAF------LDNMKAPDELVIRRVGYYEKEIKAA 103 (360)
T ss_pred CCCCCCcceeeeeehhHHHHHHh-----cC-----CeEEEEeh-HHHHH------HhcccchHHHHHHHHHHHHHHHHHH
Confidence 4678999999977643 666653 67 88876542 22211 0111112 22467788899999
Q ss_pred HhhcCcccc
Q psy2393 96 LDGFYIKFD 104 (576)
Q Consensus 96 l~~lgi~~d 104 (576)
+..+|+..+
T Consensus 104 l~~~nv~lE 112 (360)
T KOG2144|consen 104 LGSINVPLE 112 (360)
T ss_pred HhhcCCcHH
Confidence 998888754
No 174
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.75 E-value=10 Score=32.15 Aligned_cols=26 Identities=31% Similarity=0.836 Sum_probs=17.6
Q ss_pred eeccCCCCCCCCCC------CCccccCCCcCC
Q psy2393 154 IKGECPICNAKDQY------GDFCECCSSIYT 179 (576)
Q Consensus 154 v~~~~p~c~~~~~~------g~~c~~cg~~~~ 179 (576)
..+.||.|+.-.-+ .+.|+.||..+.
T Consensus 20 l~grCP~CGeGrLF~gFLK~~p~C~aCG~dyg 51 (126)
T COG5349 20 LRGRCPRCGEGRLFRGFLKVVPACEACGLDYG 51 (126)
T ss_pred hcCCCCCCCCchhhhhhcccCchhhhcccccc
Confidence 34689999875422 366888887654
No 175
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=44.24 E-value=15 Score=31.28 Aligned_cols=31 Identities=16% Similarity=0.136 Sum_probs=18.2
Q ss_pred ecceeeeecCCCCccccccceeccCCCCCCC
Q psy2393 134 NKKINQFFDPIKNIFLPDRYIKGECPICNAK 164 (576)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~ 164 (576)
.......+|..|+...+-......||.|++.
T Consensus 65 ~~vp~~~~C~~Cg~~~~~~~~~~~CP~Cgs~ 95 (113)
T PRK12380 65 VYKPAQAWCWDCSQVVEIHQHDAQCPHCHGE 95 (113)
T ss_pred EeeCcEEEcccCCCEEecCCcCccCcCCCCC
Confidence 3445667888887555444444457777653
No 176
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=43.96 E-value=15 Score=31.30 Aligned_cols=31 Identities=10% Similarity=0.290 Sum_probs=19.5
Q ss_pred ecceeeeecCCCCcccccccee-ccCCCCCCC
Q psy2393 134 NKKINQFFDPIKNIFLPDRYIK-GECPICNAK 164 (576)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~~~v~-~~~p~c~~~ 164 (576)
.......+|..|+...+..... ..||.|++.
T Consensus 65 ~~~p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~ 96 (114)
T PRK03681 65 EEQEAECWCETCQQYVTLLTQRVRRCPQCHGD 96 (114)
T ss_pred EeeCcEEEcccCCCeeecCCccCCcCcCcCCC
Confidence 3445667888888766654332 457777754
No 177
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=43.02 E-value=13 Score=33.82 Aligned_cols=20 Identities=15% Similarity=0.084 Sum_probs=10.8
Q ss_pred cEEecceeeeecCCCCcccc
Q psy2393 131 LIINKKINQFFDPIKNIFLP 150 (576)
Q Consensus 131 ~iy~~~~~~~~~~~~~~~l~ 150 (576)
+-+......|.||.|+.-++
T Consensus 101 l~~e~~~~~Y~Cp~c~~r~t 120 (158)
T TIGR00373 101 LEFETNNMFFICPNMCVRFT 120 (158)
T ss_pred HhhccCCCeEECCCCCcEee
Confidence 33445555666766654443
No 178
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=42.70 E-value=17 Score=25.26 Aligned_cols=12 Identities=8% Similarity=0.074 Sum_probs=5.7
Q ss_pred CcccCCCCccEE
Q psy2393 186 PYSILSGTKPII 197 (576)
Q Consensus 186 p~~~~~~~~~~~ 197 (576)
..|..||+++.+
T Consensus 22 ~~Cp~CG~~~~~ 33 (46)
T PRK00398 22 VRCPYCGYRILF 33 (46)
T ss_pred eECCCCCCeEEE
Confidence 344455554443
No 179
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=41.80 E-value=17 Score=30.94 Aligned_cols=30 Identities=10% Similarity=-0.023 Sum_probs=18.2
Q ss_pred cceeeeecCCCCccccccceeccCCCCCCC
Q psy2393 135 KKINQFFDPIKNIFLPDRYIKGECPICNAK 164 (576)
Q Consensus 135 ~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~ 164 (576)
......+|..|+...+-......||.|++.
T Consensus 66 ~~p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~ 95 (115)
T TIGR00100 66 DEPVECECEDCSEEVSPEIDLYRCPKCHGI 95 (115)
T ss_pred eeCcEEEcccCCCEEecCCcCccCcCCcCC
Confidence 344557788887665544444557777654
No 180
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.63 E-value=17 Score=39.75 Aligned_cols=15 Identities=0% Similarity=-0.157 Sum_probs=9.2
Q ss_pred ecceeeeecCCCCcc
Q psy2393 134 NKKINQFFDPIKNIF 148 (576)
Q Consensus 134 ~~~~~~~~~~~~~~~ 148 (576)
++..+...|..|+..
T Consensus 208 rGya~~~~C~~Cg~~ 222 (505)
T TIGR00595 208 RGYSKNLLCRSCGYI 222 (505)
T ss_pred CcCCCeeEhhhCcCc
Confidence 345566677777654
No 181
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=41.15 E-value=12 Score=24.63 Aligned_cols=15 Identities=7% Similarity=0.069 Sum_probs=8.3
Q ss_pred CCCcccCCCCccEEe
Q psy2393 184 INPYSILSGTKPIIK 198 (576)
Q Consensus 184 ~~p~~~~~~~~~~~~ 198 (576)
.+.+|..||.+++.|
T Consensus 20 ~~~~Cd~cg~~L~qR 34 (36)
T PF05191_consen 20 VEGVCDNCGGELVQR 34 (36)
T ss_dssp STTBCTTTTEBEBEE
T ss_pred CCCccCCCCCeeEeC
Confidence 345666666655544
No 182
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=40.80 E-value=24 Score=21.34 Aligned_cols=21 Identities=33% Similarity=0.805 Sum_probs=9.9
Q ss_pred cCCCCCCCCC-CCCccccCCCc
Q psy2393 157 ECPICNAKDQ-YGDFCECCSSI 177 (576)
Q Consensus 157 ~~p~c~~~~~-~g~~c~~cg~~ 177 (576)
+||.|++.-. ....|+.||-.
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~ 23 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYD 23 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCC
Confidence 3555554321 22446666643
No 183
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=40.64 E-value=19 Score=33.39 Aligned_cols=19 Identities=26% Similarity=0.190 Sum_probs=10.2
Q ss_pred cEEecceeeeecCCCCccc
Q psy2393 131 LIINKKINQFFDPIKNIFL 149 (576)
Q Consensus 131 ~iy~~~~~~~~~~~~~~~l 149 (576)
+-++.....|.||.|+.-+
T Consensus 109 l~~e~~~~~Y~Cp~C~~ry 127 (178)
T PRK06266 109 LEEEENNMFFFCPNCHIRF 127 (178)
T ss_pred hhhccCCCEEECCCCCcEE
Confidence 4445555566666665433
No 184
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=40.29 E-value=25 Score=24.33 Aligned_cols=30 Identities=13% Similarity=0.070 Sum_probs=18.0
Q ss_pred cccCCCcCCCCccCCCcccCCCCccEEeee
Q psy2393 171 CECCSSIYTPTKLINPYSILSGTKPIIKSS 200 (576)
Q Consensus 171 c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~ 200 (576)
|..||..++......-+|..||+.+.++..
T Consensus 5 C~~Cg~~~~~~~~~~irC~~CG~rIlyK~R 34 (44)
T smart00659 5 CGECGRENEIKSKDVVRCRECGYRILYKKR 34 (44)
T ss_pred CCCCCCEeecCCCCceECCCCCceEEEEeC
Confidence 555666554443333577778888776553
No 185
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=38.80 E-value=22 Score=30.16 Aligned_cols=81 Identities=10% Similarity=0.044 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHhhcCcc-cc---ccccCCChhhHHHHHHHHHHHHhcCCcE-------EecceeeeecCCCCccccc
Q psy2393 83 EFINNISSNRKKYLDGFYIK-FD---NWYSTDSIENIDLVQKIYDTLYNKAKLI-------INKKINQFFDPIKNIFLPD 151 (576)
Q Consensus 83 ~~~~~~~~~~~~~l~~lgi~-~d---~~~~t~~~~~~~~v~~~~~~L~~~~g~i-------y~~~~~~~~~~~~~~~l~~ 151 (576)
.+++...+.+.+..++=|.+ .. .-+...+--.-+.++-.|.-+. +|-+ .+......||..|+..+..
T Consensus 5 Sla~aii~~i~~~A~~~~a~~V~~V~l~IG~ls~v~~~~l~FaFev~~--egT~aega~l~Ie~~p~~~~C~~C~~~~~~ 82 (115)
T COG0375 5 SLAQAIIELIEEQAEKHGAKRVTAVWLEIGELSCVEPEALRFAFEVVA--EGTIAEGAELHIEEEPAECWCLDCGQEVEL 82 (115)
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEEEEEcceeccCHHHHHHHHHHHh--ccCcccCCEEEEEEeccEEEeccCCCeecc
Confidence 34555555666666655541 11 1111112123455666666665 4433 3445677899999777766
Q ss_pred cceeccCCCCCCCC
Q psy2393 152 RYIKGECPICNAKD 165 (576)
Q Consensus 152 ~~v~~~~p~c~~~~ 165 (576)
..-.+.||.|++..
T Consensus 83 e~~~~~CP~C~s~~ 96 (115)
T COG0375 83 EELDYRCPKCGSIN 96 (115)
T ss_pred hhheeECCCCCCCc
Confidence 66666688888653
No 186
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=38.72 E-value=8.1 Score=38.92 Aligned_cols=14 Identities=7% Similarity=-0.045 Sum_probs=5.9
Q ss_pred ecCCCCccccccce
Q psy2393 141 FDPIKNIFLPDRYI 154 (576)
Q Consensus 141 ~~~~~~~~l~~~~v 154 (576)
+||.|++.=.=+.|
T Consensus 174 ~CPvCGs~P~~s~l 187 (290)
T PF04216_consen 174 YCPVCGSPPVLSVL 187 (290)
T ss_dssp S-TTT---EEEEEE
T ss_pred cCCCCCCcCceEEE
Confidence 88988876443333
No 187
>PRK12496 hypothetical protein; Provisional
Probab=38.43 E-value=23 Score=32.37 Aligned_cols=13 Identities=31% Similarity=0.330 Sum_probs=9.3
Q ss_pred EEEEcCCCCCCCc
Q psy2393 14 IFVTTALPYANGE 26 (576)
Q Consensus 14 ~~v~~~~P~~nG~ 26 (576)
++|.++.|..++.
T Consensus 3 ~~VlDtS~~I~~~ 15 (164)
T PRK12496 3 IKVLDASAFIHGY 15 (164)
T ss_pred EEEEEChHHHccc
Confidence 5677777777774
No 188
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=38.06 E-value=13 Score=27.26 Aligned_cols=26 Identities=38% Similarity=0.842 Sum_probs=16.6
Q ss_pred cceec-cCCCCCCCCCC------C---CccccCCCc
Q psy2393 152 RYIKG-ECPICNAKDQY------G---DFCECCSSI 177 (576)
Q Consensus 152 ~~v~~-~~p~c~~~~~~------g---~~c~~cg~~ 177 (576)
+||-| .||.|.+.|.- + ..|..||-.
T Consensus 5 RFIAGA~CP~C~~~Dtl~~~~e~~~e~vECv~Cg~~ 40 (59)
T TIGR02443 5 RFIAGAVCPACSAQDTLAMWKENNIELVECVECGYQ 40 (59)
T ss_pred eEeccccCCCCcCccEEEEEEeCCceEEEeccCCCc
Confidence 45666 69999887631 1 247777753
No 189
>PRK05580 primosome assembly protein PriA; Validated
Probab=37.60 E-value=21 Score=40.56 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=13.5
Q ss_pred ecceeeeecCCCCccccccceeccCCCCCC
Q psy2393 134 NKKINQFFDPIKNIFLPDRYIKGECPICNA 163 (576)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~ 163 (576)
++..+..+|..|+..+ .||.|..
T Consensus 376 rGy~~~~~C~~Cg~~~-------~C~~C~~ 398 (679)
T PRK05580 376 RGYAPFLLCRDCGWVA-------ECPHCDA 398 (679)
T ss_pred CCCCCceEhhhCcCcc-------CCCCCCC
Confidence 3455666777776543 3666654
No 190
>PRK04023 DNA polymerase II large subunit; Validated
Probab=37.36 E-value=27 Score=40.57 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=25.7
Q ss_pred cCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccEE
Q psy2393 157 ECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPII 197 (576)
Q Consensus 157 ~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~ 197 (576)
.||.||... ....|++||.... .--+|.+||+....
T Consensus 628 fCpsCG~~t-~~frCP~CG~~Te----~i~fCP~CG~~~~~ 663 (1121)
T PRK04023 628 KCPSCGKET-FYRRCPFCGTHTE----PVYRCPRCGIEVEE 663 (1121)
T ss_pred cCCCCCCcC-CcccCCCCCCCCC----cceeCccccCcCCC
Confidence 699999874 4568999998621 12478888887654
No 191
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=36.86 E-value=18 Score=25.81 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=14.5
Q ss_pred ecCCCCc-cccccceeccCCCCCC
Q psy2393 141 FDPIKNI-FLPDRYIKGECPICNA 163 (576)
Q Consensus 141 ~~~~~~~-~l~~~~v~~~~p~c~~ 163 (576)
+||.|+. ++..+.-...|+.|+.
T Consensus 22 fCP~Cg~~~m~~~~~r~~C~~Cgy 45 (50)
T PRK00432 22 FCPRCGSGFMAEHLDRWHCGKCGY 45 (50)
T ss_pred cCcCCCcchheccCCcEECCCcCC
Confidence 7777776 6666555555666554
No 192
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=36.37 E-value=22 Score=32.14 Aligned_cols=20 Identities=20% Similarity=0.021 Sum_probs=15.7
Q ss_pred cceeeeecCCCCccccccce
Q psy2393 135 KKINQFFDPIKNIFLPDRYI 154 (576)
Q Consensus 135 ~~~~~~~~~~~~~~l~~~~v 154 (576)
.++-.|||+.|...+.+.++
T Consensus 110 ~d~~~wyc~~c~~~~~e~~f 129 (159)
T TIGR03037 110 LDGFQWFCPQCGHKLHRAEV 129 (159)
T ss_pred CcceEEECCCCCCeEEEEEE
Confidence 55677999999988886654
No 193
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=34.98 E-value=77 Score=25.04 Aligned_cols=29 Identities=7% Similarity=0.033 Sum_probs=24.3
Q ss_pred HHHHHHHHHH-HhhhHHHHHHHHHHHHHHH
Q psy2393 449 VVSSSIQKYY-ENRNFNKVLYIVIEQTNFI 477 (576)
Q Consensus 449 ~~~~~v~~a~-~~~~~~~~~~~l~~~~~~~ 477 (576)
.+.+.+.+++ ++++++.++..|+++++..
T Consensus 28 ~~~~~F~~AL~DDLNTp~Ala~L~~l~k~i 57 (81)
T cd07955 28 ALVARLREALADDLDTPKALAALDAWAREA 57 (81)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence 4557788888 6999999999999999754
No 194
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=34.91 E-value=27 Score=24.76 Aligned_cols=30 Identities=13% Similarity=0.259 Sum_probs=17.5
Q ss_pred cccCCCcCCCC-ccCCCcccCCCCccEEeee
Q psy2393 171 CECCSSIYTPT-KLINPYSILSGTKPIIKSS 200 (576)
Q Consensus 171 c~~cg~~~~~~-~l~~p~~~~~~~~~~~~~~ 200 (576)
|..||+.++.. ....-.|..||+.+.++..
T Consensus 9 C~~Cg~~~~~~~~~~~irCp~Cg~rIl~K~R 39 (49)
T COG1996 9 CARCGREVELDQETRGIRCPYCGSRILVKER 39 (49)
T ss_pred hhhcCCeeehhhccCceeCCCCCcEEEEecc
Confidence 55666666422 2334577778877766543
No 195
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=34.45 E-value=17 Score=28.09 Aligned_cols=26 Identities=42% Similarity=0.872 Sum_probs=16.7
Q ss_pred cceec-cCCCCCCCCCC------C---CccccCCCc
Q psy2393 152 RYIKG-ECPICNAKDQY------G---DFCECCSSI 177 (576)
Q Consensus 152 ~~v~~-~~p~c~~~~~~------g---~~c~~cg~~ 177 (576)
+||-| .||.|.+.|.- + -.|..||-.
T Consensus 4 rFIAGa~CP~C~~~D~i~~~~e~~ve~vECV~CGy~ 39 (71)
T PF09526_consen 4 RFIAGAVCPKCQAMDTIMMWRENGVEYVECVECGYT 39 (71)
T ss_pred eEecCccCCCCcCccEEEEEEeCCceEEEecCCCCe
Confidence 45666 69999887531 1 247788753
No 196
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=34.13 E-value=33 Score=29.37 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhcCCc-EE-------ecceeeeecCCCCcccccccee-ccCCCCCCC
Q psy2393 115 IDLVQKIYDTLYNKAKL-II-------NKKINQFFDPIKNIFLPDRYIK-GECPICNAK 164 (576)
Q Consensus 115 ~~~v~~~~~~L~~~~g~-iy-------~~~~~~~~~~~~~~~l~~~~v~-~~~p~c~~~ 164 (576)
.+.++..|..+. +|- +. .......+|..|+...+-.+.. ..||.|++.
T Consensus 41 pe~L~faf~~~~--~~T~~~ega~L~Ie~vp~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~ 97 (117)
T PRK00564 41 KSLFVSAFETFR--EESLVCKDAILDIVDEKVELECKDCSHVFKPNALDYGVCEKCHSK 97 (117)
T ss_pred HHHHHHHHHHHh--cCCcccCCCEEEEEecCCEEEhhhCCCccccCCccCCcCcCCCCC
Confidence 344555565555 333 32 3334556777776554443222 236666653
No 197
>cd01675 RNR_III Class III ribonucleotide reductase. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in strict or facultative anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). The class III enzyme from phage T4 consists of two subunits, this model covers the larger subunit w
Probab=33.93 E-value=45 Score=36.99 Aligned_cols=8 Identities=25% Similarity=0.081 Sum_probs=4.6
Q ss_pred HHHHhhcC
Q psy2393 93 KKYLDGFY 100 (576)
Q Consensus 93 ~~~l~~lg 100 (576)
+.+.+++|
T Consensus 430 ~~D~~~~g 437 (555)
T cd01675 430 KKDRKKYG 437 (555)
T ss_pred HHHHHHcC
Confidence 44555666
No 198
>PRK12286 rpmF 50S ribosomal protein L32; Reviewed
Probab=32.80 E-value=27 Score=25.71 Aligned_cols=21 Identities=29% Similarity=0.727 Sum_probs=14.6
Q ss_pred cCCCCCCCCCCCCccccCCCc
Q psy2393 157 ECPICNAKDQYGDFCECCSSI 177 (576)
Q Consensus 157 ~~p~c~~~~~~g~~c~~cg~~ 177 (576)
.||.||...-.-..|..||.+
T Consensus 29 ~C~~CG~~~~~H~vC~~CG~Y 49 (57)
T PRK12286 29 ECPNCGEPKLPHRVCPSCGYY 49 (57)
T ss_pred ECCCCCCccCCeEECCCCCcC
Confidence 477777765556678888855
No 199
>PF12674 Zn_ribbon_2: Putative zinc ribbon domain
Probab=31.83 E-value=73 Score=25.29 Aligned_cols=35 Identities=17% Similarity=0.405 Sum_probs=22.4
Q ss_pred hhhHHHHHHhhhcCCCCCh-hHHHHHHHHHhhcCCCCCc
Q psy2393 210 KRCIDFLRKWAIHDKRLQP-EIVNKIKEWLEKDNKFNDW 247 (576)
Q Consensus 210 ~~~~~~l~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~dw 247 (576)
++..+....++.+...+++ .++..+..+|. .++-|
T Consensus 45 eemie~~~~~~~~~~~~~~~~a~~~~~~~lp---~LkRW 80 (81)
T PF12674_consen 45 EEMIEFCVPFMDEFNGMTPEEARKMMPRYLP---TLKRW 80 (81)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHcc---CCccc
Confidence 6667766666333333444 47788888887 77666
No 200
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=30.56 E-value=50 Score=21.13 Aligned_cols=28 Identities=14% Similarity=0.086 Sum_probs=13.4
Q ss_pred cccCCCcCCCCccCCCcccCCCCccEEe
Q psy2393 171 CECCSSIYTPTKLINPYSILSGTKPIIK 198 (576)
Q Consensus 171 c~~cg~~~~~~~l~~p~~~~~~~~~~~~ 198 (576)
|..||..++......-+|.-||..+.++
T Consensus 3 C~~Cg~~~~~~~~~~irC~~CG~RIlyK 30 (32)
T PF03604_consen 3 CGECGAEVELKPGDPIRCPECGHRILYK 30 (32)
T ss_dssp ESSSSSSE-BSTSSTSSBSSSS-SEEBE
T ss_pred CCcCCCeeEcCCCCcEECCcCCCeEEEe
Confidence 4556655442222223666777766544
No 201
>PRK14873 primosome assembly protein PriA; Provisional
Probab=30.12 E-value=32 Score=39.00 Aligned_cols=49 Identities=10% Similarity=0.102 Sum_probs=31.9
Q ss_pred ecceeeeecCCCCccccccceeccCCCCCCCCCC-----CCccccCCCcCCCCccCCCcccCCCCc
Q psy2393 134 NKKINQFFDPIKNIFLPDRYIKGECPICNAKDQY-----GDFCECCSSIYTPTKLINPYSILSGTK 194 (576)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~-----g~~c~~cg~~~~~~~l~~p~~~~~~~~ 194 (576)
+++.+...|..|+... .||.|...=.+ --.|.-||.. . ....|..||+.
T Consensus 378 rGyap~l~C~~Cg~~~-------~C~~C~~~L~~h~~~~~l~Ch~CG~~----~-~p~~Cp~Cgs~ 431 (665)
T PRK14873 378 RGYVPSLACARCRTPA-------RCRHCTGPLGLPSAGGTPRCRWCGRA----A-PDWRCPRCGSD 431 (665)
T ss_pred CCCCCeeEhhhCcCee-------ECCCCCCceeEecCCCeeECCCCcCC----C-cCccCCCCcCC
Confidence 4566777899987653 48888764222 2358888863 1 34578888875
No 202
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=29.48 E-value=31 Score=31.71 Aligned_cols=21 Identities=10% Similarity=-0.095 Sum_probs=16.2
Q ss_pred ecceeeeecCCCCccccccce
Q psy2393 134 NKKINQFFDPIKNIFLPDRYI 154 (576)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~~~v 154 (576)
..++-.|||+.|+..+.+.++
T Consensus 115 ~~d~~~wyc~~c~~~~~e~~f 135 (177)
T PRK13264 115 ELDGFQWYCDECNHKVHEVEV 135 (177)
T ss_pred CccceEEECCCCCCeEEEEEE
Confidence 455677999999988886654
No 203
>PRK14704 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=29.24 E-value=59 Score=36.44 Aligned_cols=20 Identities=25% Similarity=0.795 Sum_probs=10.0
Q ss_pred cCCCCCCCCCCCCccccCCC
Q psy2393 157 ECPICNAKDQYGDFCECCSS 176 (576)
Q Consensus 157 ~~p~c~~~~~~g~~c~~cg~ 176 (576)
.|+.||........|+.||.
T Consensus 561 ~C~~CGy~g~~~~~CP~CG~ 580 (618)
T PRK14704 561 RCKCCSYHGVIGNECPSCGN 580 (618)
T ss_pred ecCCCCCCCCcCccCcCCCC
Confidence 36666653323345666664
No 204
>KOG2623|consensus
Probab=28.97 E-value=70 Score=33.20 Aligned_cols=48 Identities=15% Similarity=0.333 Sum_probs=27.6
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecC-C-CcccHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICA-D-DAHGAA 69 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g-~-D~~G~~ 69 (576)
+.+|++|.--+..+||+||+...+ ++.++++ .| +++.-+.| . .-.|+|
T Consensus 63 p~~vYcGfDPTA~SLHvGNLl~lm---~L~hfqr-~G-----h~~ialIGgATa~vGDP 112 (467)
T KOG2623|consen 63 PQYVYCGFDPTAESLHVGNLLALM---VLIHFQR-AG-----HRPIALIGGATASVGDP 112 (467)
T ss_pred CceEEecCCCcHHhhhhcchHHHH---HHHHHHH-cC-----CCceEEeccccccccCC
Confidence 344444443334679999998744 3444444 78 88765544 3 234555
No 205
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=28.51 E-value=36 Score=24.04 Aligned_cols=12 Identities=25% Similarity=0.254 Sum_probs=7.1
Q ss_pred ecCCCCcccccc
Q psy2393 141 FDPIKNIFLPDR 152 (576)
Q Consensus 141 ~~~~~~~~l~~~ 152 (576)
|||.|++.|.-.
T Consensus 2 FCp~Cg~~l~~~ 13 (52)
T smart00661 2 FCPKCGNMLIPK 13 (52)
T ss_pred CCCCCCCccccc
Confidence 566666665443
No 206
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=27.87 E-value=22 Score=23.06 Aligned_cols=12 Identities=33% Similarity=0.188 Sum_probs=4.1
Q ss_pred ecCCCCcccccc
Q psy2393 141 FDPIKNIFLPDR 152 (576)
Q Consensus 141 ~~~~~~~~l~~~ 152 (576)
|||.|+..|..+
T Consensus 2 fC~~CG~~l~~~ 13 (34)
T PF14803_consen 2 FCPQCGGPLERR 13 (34)
T ss_dssp B-TTT--B-EEE
T ss_pred ccccccChhhhh
Confidence 566665555433
No 207
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=27.81 E-value=93 Score=23.43 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=14.0
Q ss_pred eccCCCCCCCCCC-----CCccccCCCcC
Q psy2393 155 KGECPICNAKDQY-----GDFCECCSSIY 178 (576)
Q Consensus 155 ~~~~p~c~~~~~~-----g~~c~~cg~~~ 178 (576)
+.+||.||..... .-.|..||...
T Consensus 28 Sq~C~~CG~~~~~~~~~r~~~C~~Cg~~~ 56 (69)
T PF07282_consen 28 SQTCPRCGHRNKKRRSGRVFTCPNCGFEM 56 (69)
T ss_pred ccCccCcccccccccccceEEcCCCCCEE
Confidence 4568888765433 23466676643
No 208
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=27.80 E-value=20 Score=40.77 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccE
Q psy2393 157 ECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPI 196 (576)
Q Consensus 157 ~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~ 196 (576)
.||.|+.. .+...|+.||.... ...+|.+|+..+.
T Consensus 657 ~Cp~Cg~~-t~~~~Cp~CG~~T~----~~~~Cp~C~~~~~ 691 (900)
T PF03833_consen 657 RCPKCGKE-TFYNRCPECGSHTE----PVYVCPDCGIEVE 691 (900)
T ss_dssp ----------------------------------------
T ss_pred cCcccCCc-chhhcCcccCCccc----cceeccccccccC
Confidence 48999876 36678999998643 2357888887543
No 209
>KOG0909|consensus
Probab=27.43 E-value=23 Score=36.91 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=16.3
Q ss_pred ccccCC------CcCCCCccCCCcccCCCC
Q psy2393 170 FCECCS------SIYTPTKLINPYSILSGT 193 (576)
Q Consensus 170 ~c~~cg------~~~~~~~l~~p~~~~~~~ 193 (576)
.|..|| ++.++.+|..-++.|||.
T Consensus 196 ~C~~C~~~~RFPRYNdp~kLLeTRkGRCGE 225 (500)
T KOG0909|consen 196 KCNRCGTETRFPRYNDPIKLLETRKGRCGE 225 (500)
T ss_pred EecCCCCcccCcccCCHHHHHhhccCccch
Confidence 477777 346677777777777763
No 210
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=27.40 E-value=32 Score=30.69 Aligned_cols=21 Identities=14% Similarity=-0.093 Sum_probs=12.2
Q ss_pred CcEEecceeeeecCCCCcccc
Q psy2393 130 KLIINKKINQFFDPIKNIFLP 150 (576)
Q Consensus 130 g~iy~~~~~~~~~~~~~~~l~ 150 (576)
-+-+......+.||.|+.-+.
T Consensus 90 ~l~~e~~~~~Y~Cp~C~~~y~ 110 (147)
T smart00531 90 KLEDETNNAYYKCPNCQSKYT 110 (147)
T ss_pred HHhcccCCcEEECcCCCCEee
Confidence 344555666677777764443
No 211
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=27.39 E-value=45 Score=28.09 Aligned_cols=24 Identities=38% Similarity=0.906 Sum_probs=12.0
Q ss_pred ccCCCCCCCCCC-----CCccccCCCcCCC
Q psy2393 156 GECPICNAKDQY-----GDFCECCSSIYTP 180 (576)
Q Consensus 156 ~~~p~c~~~~~~-----g~~c~~cg~~~~~ 180 (576)
.+||.||.. .| -..|+.||..+.+
T Consensus 10 R~Cp~CG~k-FYDLnk~PivCP~CG~~~~~ 38 (108)
T PF09538_consen 10 RTCPSCGAK-FYDLNKDPIVCPKCGTEFPP 38 (108)
T ss_pred ccCCCCcch-hccCCCCCccCCCCCCccCc
Confidence 357777653 11 1236666655443
No 212
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=26.67 E-value=46 Score=24.52 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=15.9
Q ss_pred eecCCCCcccc--ccceeccCCCCCC
Q psy2393 140 FFDPIKNIFLP--DRYIKGECPICNA 163 (576)
Q Consensus 140 ~~~~~~~~~l~--~~~v~~~~p~c~~ 163 (576)
..|.+|+.-|+ +..|+-.||.||.
T Consensus 10 ~~CtSCg~~i~p~e~~v~F~CPnCGe 35 (61)
T COG2888 10 PVCTSCGREIAPGETAVKFPCPNCGE 35 (61)
T ss_pred ceeccCCCEeccCCceeEeeCCCCCc
Confidence 46777777773 3456667888874
No 213
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=26.38 E-value=3.4e+02 Score=24.12 Aligned_cols=43 Identities=5% Similarity=-0.022 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhh
Q psy2393 441 DTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQ 483 (576)
Q Consensus 441 ~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~ 483 (576)
+.+...|-.-.+.++.|+..-+...+..+-.+.+..++.|++.
T Consensus 98 ~~L~~~Lf~~L~~LD~AA~~kd~~~a~k~Y~~av~~~dafl~~ 140 (142)
T TIGR03042 98 LALAKELKDDLEKLDEAARLQDGPQAQKAYQKAAADFDAYLDL 140 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhh
Confidence 3455556666677888888888888888888888888888764
No 214
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=26.31 E-value=38 Score=28.45 Aligned_cols=26 Identities=31% Similarity=0.678 Sum_probs=15.7
Q ss_pred eeccCCCCCCCCC---CCCccccCCCcCC
Q psy2393 154 IKGECPICNAKDQ---YGDFCECCSSIYT 179 (576)
Q Consensus 154 v~~~~p~c~~~~~---~g~~c~~cg~~~~ 179 (576)
|.-.||.|+.... +.+.|-.|+++++
T Consensus 68 v~V~CP~C~K~TKmLGr~D~CM~C~~pLT 96 (114)
T PF11023_consen 68 VQVECPNCGKQTKMLGRVDACMHCKEPLT 96 (114)
T ss_pred eeeECCCCCChHhhhchhhccCcCCCcCc
Confidence 3345777776532 3367777777654
No 215
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=26.10 E-value=70 Score=27.33 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=10.2
Q ss_pred cccCCCcCCCCccCCCcccCCCCc
Q psy2393 171 CECCSSIYTPTKLINPYSILSGTK 194 (576)
Q Consensus 171 c~~cg~~~~~~~l~~p~~~~~~~~ 194 (576)
|..||......+....+|..||++
T Consensus 74 C~~Cg~~~~~~~~~~~~CP~Cgs~ 97 (117)
T PRK00564 74 CKDCSHVFKPNALDYGVCEKCHSK 97 (117)
T ss_pred hhhCCCccccCCccCCcCcCCCCC
Confidence 444444333333333345555543
No 216
>PRK12496 hypothetical protein; Provisional
Probab=25.78 E-value=43 Score=30.58 Aligned_cols=8 Identities=63% Similarity=1.369 Sum_probs=3.8
Q ss_pred CccccCCC
Q psy2393 169 DFCECCSS 176 (576)
Q Consensus 169 ~~c~~cg~ 176 (576)
+.|+.||.
T Consensus 144 ~~C~~CG~ 151 (164)
T PRK12496 144 DVCEICGS 151 (164)
T ss_pred CcCCCCCC
Confidence 34555554
No 217
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=25.77 E-value=57 Score=21.07 Aligned_cols=7 Identities=71% Similarity=1.834 Sum_probs=3.5
Q ss_pred cCCCCCC
Q psy2393 157 ECPICNA 163 (576)
Q Consensus 157 ~~p~c~~ 163 (576)
.||.|++
T Consensus 20 ~CP~Cg~ 26 (34)
T cd00729 20 KCPICGA 26 (34)
T ss_pred cCcCCCC
Confidence 4555544
No 218
>KOG4718|consensus
Probab=25.38 E-value=16 Score=34.20 Aligned_cols=78 Identities=13% Similarity=0.280 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHhcCCcEEecceeeeecCCC----Cccccccc--eeccCCCCCCCCCCCCccccCCCcCCCCcc----
Q psy2393 114 NIDLVQKIYDTLYNKAKLIINKKINQFFDPIK----NIFLPDRY--IKGECPICNAKDQYGDFCECCSSIYTPTKL---- 183 (576)
Q Consensus 114 ~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~----~~~l~~~~--v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l---- 183 (576)
-...+++++.++. +.|+.++.++.-.+.+++ +.+|++.+ -...|..|..----|..|..||-.+....+
T Consensus 135 ~ks~iE~lLqkf~-q~gwf~e~eg~ftl~~ralaELe~YL~s~y~dnlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~ 213 (235)
T KOG4718|consen 135 KKSRIEELLQKFI-QMGWFMEVEGRFTLGPRALAELEFYLSSNYADNLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYL 213 (235)
T ss_pred CHHHHHHHHHHHH-HhchhheecceEEEchHHHHHHHHHHHhhhHHHHHHHhHhHHHhheeeccCcccchhhhHHHHHHh
Confidence 4567888999999 999999988877777665 33333333 223576665433345667777654432221
Q ss_pred -CCCcccCCC
Q psy2393 184 -INPYSILSG 192 (576)
Q Consensus 184 -~~p~~~~~~ 192 (576)
.-|.||-||
T Consensus 214 q~~~~cphc~ 223 (235)
T KOG4718|consen 214 QRRDICPHCG 223 (235)
T ss_pred cccCcCCchh
Confidence 146666665
No 219
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=24.62 E-value=45 Score=29.60 Aligned_cols=24 Identities=29% Similarity=0.802 Sum_probs=16.6
Q ss_pred cCCCCCCCCCC---------C------CccccCCCcCCC
Q psy2393 157 ECPICNAKDQY---------G------DFCECCSSIYTP 180 (576)
Q Consensus 157 ~~p~c~~~~~~---------g------~~c~~cg~~~~~ 180 (576)
.||.|+..+.. | -.|..||.-++.
T Consensus 2 ~CP~C~~~dtkViDSR~~~dg~~IRRRReC~~C~~RFTT 40 (147)
T TIGR00244 2 HCPFCQHHNTRVLDSRLVEDGQSIRRRRECLECHERFTT 40 (147)
T ss_pred CCCCCCCCCCEeeeccccCCCCeeeecccCCccCCccce
Confidence 59999986532 2 369999976554
No 220
>TIGR02827 RNR_anaer_Bdell anaerobic ribonucleoside-triphosphate reductase. Members of this family belong to the class III anaerobic ribonucleoside-triphosphate reductases (RNR). These glycine-radical-containing enzymes are oxygen-sensitive and operate under anaerobic conditions. The genes for this family are pair with genes for an acitivating protein that creates a glycine radical. Members of this family, though related, fall outside the scope of TIGR02487, a functionally equivalent protein set; no genome has members in both familes. Identification as RNR is supported by gene pairing with the activating protein, lack of other anaerobic RNR, and presence of an upstream regulatory element strongly conserved upstream of most RNR operons.
Probab=24.55 E-value=84 Score=34.94 Aligned_cols=19 Identities=32% Similarity=0.681 Sum_probs=8.4
Q ss_pred CCCCCCCC-CCCCccccCCC
Q psy2393 158 CPICNAKD-QYGDFCECCSS 176 (576)
Q Consensus 158 ~p~c~~~~-~~g~~c~~cg~ 176 (576)
|+.||... ..+..|+.||.
T Consensus 535 C~~CGy~~g~~~~~CP~CGs 554 (586)
T TIGR02827 535 CNDCHHIDKRTLHRCPVCGS 554 (586)
T ss_pred cCCCCCcCCCcCCcCcCCCC
Confidence 55555421 12245555553
No 221
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=24.45 E-value=38 Score=28.06 Aligned_cols=13 Identities=46% Similarity=0.552 Sum_probs=10.4
Q ss_pred CCCCCcccchHhhh
Q psy2393 21 PYANGELHIGHIME 34 (576)
Q Consensus 21 P~~nG~lHiGH~~~ 34 (576)
.++ |++|+||..-
T Consensus 6 G~F-dp~H~GH~~l 18 (105)
T cd02156 6 GEP-GYLHIGHAKL 18 (105)
T ss_pred CCC-CCCCHHHHHH
Confidence 344 9999999975
No 222
>TIGR01031 rpmF_bact ribosomal protein L32. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.
Probab=24.18 E-value=38 Score=24.67 Aligned_cols=21 Identities=24% Similarity=0.597 Sum_probs=13.8
Q ss_pred cCCCCCCCCCCCCccccCCCc
Q psy2393 157 ECPICNAKDQYGDFCECCSSI 177 (576)
Q Consensus 157 ~~p~c~~~~~~g~~c~~cg~~ 177 (576)
.||.||...-.-..|..||.+
T Consensus 28 ~C~~cG~~~~~H~vc~~cG~Y 48 (55)
T TIGR01031 28 VCPNCGEFKLPHRVCPSCGYY 48 (55)
T ss_pred ECCCCCCcccCeeECCccCeE
Confidence 477777665555667777754
No 223
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=23.80 E-value=40 Score=28.59 Aligned_cols=80 Identities=11% Similarity=-0.013 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhhcCcc-cc---ccccCCChhhHHHHHHHHHHHHhcCC------cEEecceeeeecCCCCccccccc
Q psy2393 84 FINNISSNRKKYLDGFYIK-FD---NWYSTDSIENIDLVQKIYDTLYNKAK------LIINKKINQFFDPIKNIFLPDRY 153 (576)
Q Consensus 84 ~~~~~~~~~~~~l~~lgi~-~d---~~~~t~~~~~~~~v~~~~~~L~~~~g------~iy~~~~~~~~~~~~~~~l~~~~ 153 (576)
+++...+...+..++-|.. .. .-+...+---.+..+..|..+. +.- +.........+|..|+.-.+-..
T Consensus 6 i~~~iv~~v~~~a~~~~~~kV~~V~l~iG~ls~V~pe~L~f~f~~~~-~~T~~e~a~L~Ie~~p~~~~C~~Cg~~~~~~~ 84 (113)
T PF01155_consen 6 IAQSIVEIVEEEAEENGAKKVTKVRLEIGELSGVEPEALRFAFEVLA-EGTILEGAELEIEEVPARARCRDCGHEFEPDE 84 (113)
T ss_dssp HHHHHHHHHHHHHHCTT-SEEEEEEEEEETTS---HHHHHHHHHHHH-CCSTTTT-EEEEEEE--EEEETTTS-EEECHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEEEECCcccCCHHHHHHHHHHHh-CCCCccCCEEEEEecCCcEECCCCCCEEecCC
Confidence 3444555555555555541 11 1122222223455566666665 322 12334445567777766554444
Q ss_pred eeccCCCCCCC
Q psy2393 154 IKGECPICNAK 164 (576)
Q Consensus 154 v~~~~p~c~~~ 164 (576)
....||.|+..
T Consensus 85 ~~~~CP~Cgs~ 95 (113)
T PF01155_consen 85 FDFSCPRCGSP 95 (113)
T ss_dssp CCHH-SSSSSS
T ss_pred CCCCCcCCcCC
Confidence 44556666653
No 224
>PRK02935 hypothetical protein; Provisional
Probab=23.61 E-value=54 Score=27.19 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=14.7
Q ss_pred ccCCCCCCCCC---CCCccccCCCcCC
Q psy2393 156 GECPICNAKDQ---YGDFCECCSSIYT 179 (576)
Q Consensus 156 ~~~p~c~~~~~---~g~~c~~cg~~~~ 179 (576)
-.||.|..... +.|.|-.|+.+++
T Consensus 71 V~CP~C~K~TKmLGrvD~CM~C~~PLT 97 (110)
T PRK02935 71 VICPSCEKPTKMLGRVDACMHCNQPLT 97 (110)
T ss_pred eECCCCCchhhhccceeecCcCCCcCC
Confidence 35676665432 3467888877755
No 225
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=22.30 E-value=48 Score=29.91 Aligned_cols=23 Identities=35% Similarity=0.894 Sum_probs=14.6
Q ss_pred cCCCCCCCCC---------CC------CccccCCCcCC
Q psy2393 157 ECPICNAKDQ---------YG------DFCECCSSIYT 179 (576)
Q Consensus 157 ~~p~c~~~~~---------~g------~~c~~cg~~~~ 179 (576)
.||+|+.++. .| -.|..||.-+.
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~ 39 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFT 39 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcce
Confidence 5899987541 12 35888887544
No 226
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.21 E-value=1.8e+02 Score=31.78 Aligned_cols=20 Identities=25% Similarity=0.708 Sum_probs=9.3
Q ss_pred cCCCCCCCCCCCCccccCCC
Q psy2393 157 ECPICNAKDQYGDFCECCSS 176 (576)
Q Consensus 157 ~~p~c~~~~~~g~~c~~cg~ 176 (576)
.|++|+........|+.||.
T Consensus 242 ~Ch~Cg~~~~~~~~Cp~C~s 261 (505)
T TIGR00595 242 RCHYCGYQEPIPKTCPQCGS 261 (505)
T ss_pred EcCCCcCcCCCCCCCCCCCC
Confidence 35555544444444544443
No 227
>TIGR02487 NrdD anaerobic ribonucleoside-triphosphate reductase. This model represents the oxygen-sensitive (anaerobic, class III) ribonucleotide reductase. The mechanism of the enzyme involves a glycine-centered radical, a C-terminal zinc binding site, and a set of conserved active site cysteines and asparagines. This enzyme requires an activating component, NrdG, a radical-SAM domain containing enzyme (TIGR02491). Together the two form an alpha-2/beta-2 heterodimer.
Probab=21.97 E-value=96 Score=34.59 Aligned_cols=19 Identities=32% Similarity=0.599 Sum_probs=9.1
Q ss_pred CCCCCCCCCCC-CccccCCC
Q psy2393 158 CPICNAKDQYG-DFCECCSS 176 (576)
Q Consensus 158 ~p~c~~~~~~g-~~c~~cg~ 176 (576)
|+.||...... ..|+.||.
T Consensus 527 C~~CG~~g~~~~~~CP~Cgs 546 (579)
T TIGR02487 527 CEDCGYTGEGLNDKCPKCGS 546 (579)
T ss_pred CCCCCCCCCCCCCcCcCCCC
Confidence 55555433222 35655554
No 228
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=21.70 E-value=54 Score=24.01 Aligned_cols=19 Identities=26% Similarity=0.861 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCCccccCCCc
Q psy2393 158 CPICNAKDQYGDFCECCSSI 177 (576)
Q Consensus 158 ~p~c~~~~~~g~~c~~cg~~ 177 (576)
||.|+...- ...|..||..
T Consensus 8 C~~CgvYTL-k~~CP~CG~~ 26 (56)
T PRK13130 8 CPKCGVYTL-KEICPVCGGK 26 (56)
T ss_pred CCCCCCEEc-cccCcCCCCC
Confidence 555554332 4556666654
No 229
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=21.57 E-value=2.2e+02 Score=23.02 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHhcCCcEEe
Q psy2393 113 ENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 113 ~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+-...+..+-+.|. .+|+.-.
T Consensus 35 ~v~~~L~hiak~lk-r~g~~Ll 55 (97)
T COG3357 35 EVYDHLEHIAKSLK-RKGKRLL 55 (97)
T ss_pred HHHHHHHHHHHHHH-hCCceEE
Confidence 45666777778888 8886554
No 230
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=21.26 E-value=58 Score=28.99 Aligned_cols=23 Identities=35% Similarity=0.892 Sum_probs=15.7
Q ss_pred cCCCCCCCCCC---------C------CccccCCCcCC
Q psy2393 157 ECPICNAKDQY---------G------DFCECCSSIYT 179 (576)
Q Consensus 157 ~~p~c~~~~~~---------g------~~c~~cg~~~~ 179 (576)
.||.|+..+.. | -.|++||.-++
T Consensus 2 ~CPfC~~~~tkViDSR~~edg~aIRRRReC~~C~~RFT 39 (156)
T COG1327 2 KCPFCGHEDTKVIDSRPAEEGNAIRRRRECLECGERFT 39 (156)
T ss_pred CCCCCCCCCCeeeecccccccchhhhhhcccccccccc
Confidence 59999876532 2 36999986554
No 231
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=21.12 E-value=17 Score=27.81 Aligned_cols=21 Identities=19% Similarity=0.083 Sum_probs=7.6
Q ss_pred cCCCCccccccceeccCCCCC
Q psy2393 142 DPIKNIFLPDRYIKGECPICN 162 (576)
Q Consensus 142 ~~~~~~~l~~~~v~~~~p~c~ 162 (576)
||.|+..|.-....+.|..|.
T Consensus 4 CP~C~~~L~~~~~~~~C~~C~ 24 (70)
T PF07191_consen 4 CPKCQQELEWQGGHYHCEACQ 24 (70)
T ss_dssp -SSS-SBEEEETTEEEETTT-
T ss_pred CCCCCCccEEeCCEEECcccc
Confidence 455544444333333444443
No 232
>COG4640 Predicted membrane protein [Function unknown]
Probab=21.01 E-value=53 Score=33.91 Aligned_cols=23 Identities=26% Similarity=0.755 Sum_probs=13.7
Q ss_pred CCCCCCCC-CCCCccccCCCcCCC
Q psy2393 158 CPICNAKD-QYGDFCECCSSIYTP 180 (576)
Q Consensus 158 ~p~c~~~~-~~g~~c~~cg~~~~~ 180 (576)
||.||... ...-+|..||...+.
T Consensus 4 C~kcG~qk~Ed~~qC~qCG~~~t~ 27 (465)
T COG4640 4 CPKCGSQKAEDDVQCTQCGHKFTS 27 (465)
T ss_pred ccccccccccccccccccCCcCCc
Confidence 77777432 223348888876553
No 233
>KOG2713|consensus
Probab=20.52 E-value=2.1e+02 Score=28.48 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=15.4
Q ss_pred CCCcEEeeeccEEe-----CCccccccCCCc
Q psy2393 338 KLPNNIFVHGFMTI-----NGKKMSKSNKIG 363 (576)
Q Consensus 338 ~~p~~~~~~g~v~~-----~g~KMSKS~gn~ 363 (576)
+.|..++..++-.+ .-+|||||.+|-
T Consensus 189 pvP~~il~~~~~rV~SL~dpekKMSKSd~n~ 219 (347)
T KOG2713|consen 189 PVPEQILRQSHARVMSLRDPEKKMSKSDPNP 219 (347)
T ss_pred cCcHHHHhhhhhhhhhccChhhhcccCCCCC
Confidence 45555555433222 346999998763
No 234
>PRK08579 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=20.34 E-value=99 Score=34.75 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=9.9
Q ss_pred cCCCCCCC-CCCCCccccCCC
Q psy2393 157 ECPICNAK-DQYGDFCECCSS 176 (576)
Q Consensus 157 ~~p~c~~~-~~~g~~c~~cg~ 176 (576)
.|+.||.. ...+..|+.||.
T Consensus 570 ~C~~CG~~~~g~~~~CP~CGs 590 (625)
T PRK08579 570 VCNKCGRSTTGLYTRCPRCGS 590 (625)
T ss_pred cCCCCCCccCCCCCcCcCCCC
Confidence 36666652 223445666654
No 235
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=20.29 E-value=36 Score=21.43 Aligned_cols=20 Identities=35% Similarity=1.099 Sum_probs=6.7
Q ss_pred cCCCCCCCCCCCC----ccccCCC
Q psy2393 157 ECPICNAKDQYGD----FCECCSS 176 (576)
Q Consensus 157 ~~p~c~~~~~~g~----~c~~cg~ 176 (576)
.||.|++...|.+ .|+.||.
T Consensus 4 ~Cp~C~se~~y~D~~~~vCp~C~~ 27 (30)
T PF08274_consen 4 KCPLCGSEYTYEDGELLVCPECGH 27 (30)
T ss_dssp --TTT-----EE-SSSEEETTTTE
T ss_pred CCCCCCCcceeccCCEEeCCcccc
Confidence 4777777654422 3555553
No 236
>PRK08270 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=20.28 E-value=1.1e+02 Score=34.71 Aligned_cols=19 Identities=26% Similarity=0.653 Sum_probs=8.7
Q ss_pred CCCCCCCCCCCCccccCCC
Q psy2393 158 CPICNAKDQYGDFCECCSS 176 (576)
Q Consensus 158 ~p~c~~~~~~g~~c~~cg~ 176 (576)
|+.||.....+..|+.||.
T Consensus 629 C~~CG~~~g~~~~CP~CG~ 647 (656)
T PRK08270 629 CPKHGYLSGEHEFCPKCGE 647 (656)
T ss_pred cCCCCCcCCCCCCCcCCcC
Confidence 5555543333344555553
Done!