Query psy2393
Match_columns 576
No_of_seqs 202 out of 1715
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 23:53:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rqg_A Methionyl-tRNA syntheta 100.0 9E-109 3E-113 921.6 51.4 536 12-572 2-558 (722)
2 3h99_A Methionyl-tRNA syntheta 100.0 3E-108 1E-112 899.6 45.1 546 8-575 14-560 (560)
3 3u1f_A Methionyl-tRNA syntheta 100.0 3E-100 1E-104 836.1 34.4 520 9-569 6-541 (542)
4 3kfl_A Methionyl-tRNA syntheta 100.0 3.6E-98 1E-102 817.5 37.6 522 9-574 23-562 (564)
5 4dlp_A Aminoacyl-tRNA syntheta 100.0 1.1E-95 4E-100 796.2 41.3 505 11-569 24-536 (536)
6 2x1l_A Methionyl-tRNA syntheta 100.0 1.2E-91 4.2E-96 763.8 39.6 509 4-565 4-524 (524)
7 2csx_A Methionyl-tRNA syntheta 100.0 4.1E-90 1.4E-94 747.1 33.8 488 11-564 4-497 (497)
8 2d5b_A Methionyl-tRNA syntheta 100.0 1.2E-89 4.1E-94 744.8 37.1 489 12-562 3-500 (500)
9 1gax_A Valrs, valyl-tRNA synth 100.0 8.5E-81 2.9E-85 703.3 41.0 482 9-534 31-696 (862)
10 1ffy_A Isoleucyl-tRNA syntheta 100.0 1E-80 3.5E-85 708.6 37.3 503 9-534 45-773 (917)
11 1ile_A Ilers, isoleucyl-tRNA s 100.0 3.1E-81 1.1E-85 711.6 27.8 491 9-535 35-772 (821)
12 1wz2_A Leucyl-tRNA synthetase; 100.0 1.7E-74 6E-79 664.2 37.5 490 11-535 33-812 (967)
13 1wkb_A Leucyl-tRNA synthetase; 100.0 4.2E-74 1.4E-78 654.2 36.3 488 9-533 31-810 (810)
14 4arc_A Leucine--tRNA ligase; l 100.0 3.4E-71 1.2E-75 622.4 38.2 457 9-535 50-799 (880)
15 2v0c_A Aminoacyl-tRNA syntheta 100.0 1.3E-69 4.4E-74 615.0 42.9 458 9-533 30-795 (878)
16 1li5_A Cysrs, cysteinyl-tRNA s 100.0 2.5E-50 8.6E-55 427.5 29.3 345 13-483 24-372 (461)
17 3c8z_A Cysteinyl-tRNA syntheta 100.0 1.7E-48 5.7E-53 409.6 28.9 343 13-479 39-390 (414)
18 3sp1_A Cysteinyl-tRNA syntheta 100.0 1.6E-48 5.6E-53 409.7 26.2 356 13-478 44-416 (501)
19 3tqo_A Cysteinyl-tRNA syntheta 100.0 6.8E-48 2.3E-52 403.7 29.9 346 11-483 23-374 (462)
20 2zue_A Arginyl-tRNA synthetase 100.0 4.7E-43 1.6E-47 384.3 22.4 392 9-514 116-622 (629)
21 1iq0_A Arginyl-tRNA synthetase 100.0 3.4E-42 1.2E-46 376.8 28.5 391 13-514 104-585 (592)
22 3fnr_A Arginyl-tRNA synthetase 100.0 4E-38 1.4E-42 331.8 31.4 335 10-487 28-420 (464)
23 1f7u_A Arginyl-tRNA synthetase 100.0 1.4E-34 4.7E-39 314.9 26.6 336 9-487 140-571 (607)
24 1irx_A Lysyl-tRNA synthetase; 100.0 1E-32 3.5E-37 298.4 7.6 283 13-416 20-336 (523)
25 3aii_A Glutamyl-tRNA synthetas 99.8 2.1E-18 7.1E-23 182.3 16.3 94 15-134 97-190 (553)
26 2o5r_A Glutamyl-tRNA synthetas 99.7 4.6E-16 1.6E-20 164.6 20.7 97 12-134 11-116 (481)
27 1qtq_A GLNRS, protein (glutami 99.7 3.8E-16 1.3E-20 165.1 17.7 94 15-134 27-121 (553)
28 2cfo_A Glutamyl-tRNA synthetas 99.7 1.2E-15 4E-20 161.5 21.3 93 16-134 3-96 (492)
29 3al0_C Glutamyl-tRNA(Gln) amid 99.7 2.8E-16 9.5E-21 169.7 13.3 245 13-387 129-390 (592)
30 3afh_A Glutamyl-tRNA synthetas 99.7 3.3E-15 1.1E-19 157.7 20.9 260 15-403 26-302 (488)
31 4g6z_A Glutamate-tRNA ligase; 99.6 1.5E-14 5E-19 151.9 21.8 273 15-403 26-311 (490)
32 2hz7_A Glutaminyl-tRNA synthet 99.6 9.3E-16 3.2E-20 169.0 13.2 94 15-134 67-161 (851)
33 1j09_A Glutamyl-tRNA synthetas 99.6 8.6E-15 3E-19 154.0 19.5 89 312-403 200-291 (468)
34 2ja2_A Glutamyl-tRNA synthetas 99.6 4.8E-14 1.6E-18 148.9 21.4 94 15-134 7-109 (498)
35 1nzj_A Hypothetical protein YA 99.5 1.4E-14 4.8E-19 143.8 9.0 94 15-134 6-100 (298)
36 4gri_A Glutamate--tRNA ligase; 99.5 5E-13 1.7E-17 142.9 15.1 90 311-403 229-321 (512)
37 2cyb_A Tyrosyl-tRNA synthetase 98.3 6.3E-06 2.2E-10 83.0 13.9 66 313-386 173-239 (323)
38 1n3l_A Tyrosyl-tRNA synthetase 98.0 2E-05 7E-10 80.6 10.3 65 313-385 181-247 (372)
39 1yi8_B Tryptophanyl-tRNA synth 98.0 0.00049 1.7E-08 69.6 19.7 66 313-385 165-239 (351)
40 3tzl_A Tryptophanyl-tRNA synth 97.9 1.1E-05 3.9E-10 80.7 6.6 65 22-104 11-75 (322)
41 2dlc_X Tyrosyl-tRNA synthetase 97.9 4E-05 1.4E-09 79.1 10.0 54 313-368 185-241 (394)
42 2g36_A Tryptophanyl-tRNA synth 97.8 0.00015 5E-09 73.2 13.4 67 313-386 156-230 (340)
43 3hzr_A Tryptophanyl-tRNA synth 97.8 0.00025 8.5E-09 72.4 13.6 79 10-105 79-157 (386)
44 3jxe_A Tryptophanyl-tRNA synth 97.7 0.00024 8.4E-09 72.6 11.7 78 10-104 70-148 (392)
45 3tze_A Tryptophanyl-tRNA synth 97.6 0.0057 1.9E-07 62.8 21.0 79 10-105 98-177 (406)
46 2el7_A Tryptophanyl-tRNA synth 97.6 0.00015 5.1E-09 73.1 9.0 67 313-386 144-220 (337)
47 2ip1_A Tryptophanyl-tRNA synth 97.5 0.00058 2E-08 70.9 12.1 78 11-104 100-178 (432)
48 3hv0_A Tryptophanyl-tRNA synth 97.5 0.00098 3.4E-08 68.3 13.3 79 10-105 71-151 (393)
49 1r6u_A Tryptophanyl-tRNA synth 97.4 0.00064 2.2E-08 70.5 11.6 78 10-104 105-183 (437)
50 1i6k_A TRPRS, tryptophanyl-tRN 97.4 0.00031 1.1E-08 70.4 9.0 70 15-104 4-73 (328)
51 1r6t_A Tryptophanyl-tRNA synth 97.4 0.0016 5.5E-08 68.5 13.5 77 11-104 153-230 (477)
52 2cya_A Tyrosyl-tRNA synthetase 97.3 0.00092 3.1E-08 68.1 11.1 69 22-105 43-111 (364)
53 3i05_A Tryptophanyl-tRNA synth 97.3 0.0012 4.2E-08 67.6 12.0 78 10-104 75-153 (395)
54 2yy5_A Tryptophanyl-tRNA synth 97.2 0.00055 1.9E-08 69.2 8.0 72 13-104 5-76 (348)
55 3vgj_A Tyrosyl-tRNA synthetase 97.1 0.0028 9.5E-08 64.6 11.2 69 22-105 64-133 (373)
56 2yxn_A Tyrosyl-tRNA synthetase 95.4 0.0091 3.1E-07 59.6 3.8 68 313-385 194-262 (322)
57 2pid_A Tyrosyl-tRNA synthetase 94.7 0.024 8.2E-07 57.3 4.8 69 313-386 213-282 (356)
58 1jil_A Tyrrs, tyrosyl-tRNA syn 94.5 0.037 1.3E-06 57.2 5.7 68 313-385 189-258 (420)
59 2ts1_A Tyrosyl-tRNA synthetase 94.5 0.033 1.1E-06 57.4 5.2 68 313-385 188-257 (419)
60 2jan_A Tyrosyl-tRNA synthetase 94.4 0.035 1.2E-06 57.4 5.2 68 313-385 190-259 (432)
61 1h3f_A Tyrosyl-tRNA synthetase 93.9 0.043 1.5E-06 56.8 4.6 65 313-385 190-256 (432)
62 3a04_A Tryptophanyl-tRNA synth 93.0 0.14 4.8E-06 52.0 6.6 79 9-104 66-144 (372)
63 2zp1_A Tyrosyl-tRNA synthetase 92.0 0.067 2.3E-06 53.1 2.7 68 22-107 36-103 (314)
64 2zp1_A Tyrosyl-tRNA synthetase 91.5 0.39 1.3E-05 47.6 7.7 50 313-368 166-217 (314)
65 1y42_X Tyrosyl-tRNA synthetase 90.8 0.14 4.7E-06 52.4 3.6 43 341-386 278-321 (392)
66 3prh_A Tryptophanyl-tRNA synth 90.8 0.25 8.4E-06 50.3 5.4 74 12-104 30-107 (388)
67 3foc_A Tryptophanyl-tRNA synth 90.5 0.76 2.6E-05 47.5 8.9 79 10-104 88-167 (451)
68 2j5b_A Tyrosyl-tRNA synthetase 88.3 0.23 7.7E-06 50.0 3.0 77 12-104 40-116 (348)
69 3sz3_A Tryptophanyl-tRNA synth 87.5 0.52 1.8E-05 47.1 4.9 65 22-104 14-78 (341)
70 3foc_A Tryptophanyl-tRNA synth 86.8 0.32 1.1E-05 50.3 3.1 52 313-366 290-345 (451)
71 3prh_A Tryptophanyl-tRNA synth 86.4 1.2 4E-05 45.3 6.9 55 313-368 174-242 (388)
72 2j5b_A Tyrosyl-tRNA synthetase 86.3 1.8 6.3E-05 43.3 8.3 54 313-368 189-246 (348)
73 2cyc_A Tyrosyl-tRNA synthetase 86.0 0.36 1.2E-05 49.0 2.9 70 22-104 41-114 (375)
74 3p0j_A Tyrosyl-tRNA synthetase 85.9 1.1 3.8E-05 49.2 6.9 76 13-104 40-116 (690)
75 3n9i_A Tryptophanyl-tRNA synth 85.1 1.7 5.8E-05 43.4 7.3 71 13-104 16-87 (346)
76 3sz3_A Tryptophanyl-tRNA synth 85.1 1.6 5.5E-05 43.5 7.1 67 313-385 146-228 (341)
77 2cyc_A Tyrosyl-tRNA synthetase 84.1 1.4 4.8E-05 44.6 6.3 66 313-385 183-276 (375)
78 3p0j_A Tyrosyl-tRNA synthetase 82.2 0.75 2.5E-05 50.5 3.5 54 313-367 186-243 (690)
79 3n9i_A Tryptophanyl-tRNA synth 81.6 2 6.8E-05 42.9 6.1 55 313-368 155-223 (346)
80 1lko_A Rubrerythrin all-iron(I 80.8 1.3 4.4E-05 40.3 4.1 53 111-164 128-180 (191)
81 2kdx_A HYPA, hydrogenase/ureas 76.6 5.1 0.00018 33.2 6.3 81 83-164 7-99 (119)
82 3a43_A HYPD, hydrogenase nicke 71.6 7.8 0.00027 33.1 6.2 69 83-153 5-84 (139)
83 3a04_A Tryptophanyl-tRNA synth 71.3 3 0.0001 42.1 4.2 52 313-366 211-268 (372)
84 2pid_A Tyrosyl-tRNA synthetase 67.8 3.5 0.00012 41.4 3.7 32 22-62 54-86 (356)
85 2yxn_A Tyrosyl-tRNA synthetase 67.6 3.4 0.00011 40.9 3.5 32 22-62 41-73 (322)
86 2ts1_A Tyrosyl-tRNA synthetase 66.0 3.8 0.00013 42.0 3.7 32 22-62 38-70 (419)
87 1jil_A Tyrrs, tyrosyl-tRNA syn 65.1 3.9 0.00013 42.0 3.5 70 22-103 40-113 (420)
88 1y42_X Tyrosyl-tRNA synthetase 64.5 4.3 0.00015 41.3 3.7 32 22-62 72-104 (392)
89 2jan_A Tyrosyl-tRNA synthetase 62.6 4.8 0.00017 41.4 3.7 33 21-62 39-72 (432)
90 1h3f_A Tyrosyl-tRNA synthetase 61.9 6.4 0.00022 40.5 4.4 41 12-62 36-77 (432)
91 1dl6_A Transcription factor II 61.0 7.1 0.00024 27.7 3.3 36 157-192 13-54 (58)
92 1pft_A TFIIB, PFTFIIBN; N-term 59.8 7.1 0.00024 26.7 3.0 36 157-192 7-48 (50)
93 3pwf_A Rubrerythrin; non heme 59.1 7.6 0.00026 34.4 3.9 50 111-164 113-162 (170)
94 4ayb_P DNA-directed RNA polyme 57.1 5.7 0.00019 26.6 1.9 25 140-164 4-32 (48)
95 2zjr_Z 50S ribosomal protein L 50.5 8.8 0.0003 27.5 2.2 21 157-177 32-52 (60)
96 3v2d_5 50S ribosomal protein L 49.0 6.8 0.00023 28.1 1.5 21 157-177 32-52 (60)
97 3k7a_M Transcription initiatio 47.7 15 0.0005 36.6 4.3 44 148-191 14-65 (345)
98 1yuz_A Nigerythrin; rubrythrin 46.7 13 0.00045 33.8 3.4 47 111-164 149-195 (202)
99 2jne_A Hypothetical protein YF 39.2 5 0.00017 31.5 -0.6 51 128-178 21-71 (101)
100 3j20_Y 30S ribosomal protein S 35.9 13 0.00043 25.6 1.1 23 140-162 20-44 (50)
101 4h62_V Mediator of RNA polymer 33.6 19 0.00063 20.8 1.3 15 559-573 6-20 (31)
102 1twf_L ABC10-alpha, DNA-direct 33.4 19 0.00065 26.6 1.8 11 187-197 47-57 (70)
103 2jrp_A Putative cytoplasmic pr 30.5 14 0.00048 28.1 0.7 10 141-150 4-13 (81)
104 3dvk_B Voltage-dependent R-typ 25.3 73 0.0025 17.9 2.8 19 28-46 2-21 (23)
105 1yfu_A 3-hydroxyanthranilate-3 25.0 30 0.001 30.5 1.8 20 135-154 118-137 (174)
106 3nw0_A Non-structural maintena 24.7 46 0.0016 31.0 3.3 80 114-194 134-226 (238)
107 1zvf_A 3-hydroxyanthranilate 3 23.9 32 0.0011 30.3 1.8 20 135-154 120-139 (176)
108 2k53_A A3DK08 protein; NESG, C 23.4 26 0.00088 26.3 1.0 51 35-92 7-63 (76)
109 3zsu_A TLL2057 protein, cyanoq 22.4 3.3E+02 0.011 22.5 7.9 45 441-485 83-127 (130)
110 3h0g_L DNA-directed RNA polyme 21.9 55 0.0019 23.5 2.4 12 187-198 40-51 (63)
111 4bbr_M Transcription initiatio 21.4 14 0.00049 36.7 -1.0 27 154-180 20-54 (345)
112 2apo_B Ribosome biogenesis pro 20.7 42 0.0014 23.9 1.6 19 158-177 9-27 (60)
113 2lcq_A Putative toxin VAPC6; P 20.7 43 0.0015 29.1 2.1 9 187-195 150-158 (165)
114 2lcq_A Putative toxin VAPC6; P 20.5 40 0.0014 29.3 1.8 12 139-150 132-143 (165)
No 1
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=8.6e-109 Score=921.59 Aligned_cols=536 Identities=31% Similarity=0.600 Sum_probs=497.1
Q ss_pred CeEEEEcCCCCCCCcccchHhhh-HHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIME-YIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISS 90 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~-~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 90 (576)
++|+|++|||||||.+||||+++ ++++|+++||+||+| ++|.|++|||+||+||+.+|++.|.+|+++++++.+
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G-----~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~ 76 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKG-----EDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHE 76 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTT-----CEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcC-----CceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 68999999999999999999998 999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCc
Q psy2393 91 NRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDF 170 (576)
Q Consensus 91 ~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~ 170 (576)
.|+++|++|||++|.|++|+++.|.+.++++|.+|+ ++|+||++..++|||+.|+++|+|++|+|+||.|+.++++|+.
T Consensus 77 ~~~~~~~~lgis~D~~~rT~d~~~~~~v~~~f~~L~-~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~ 155 (722)
T 1rqg_A 77 QIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAY-ENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQ 155 (722)
T ss_dssp HHHHHHHHHTCCCSEEEETTSHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTT
T ss_pred HHHHHHHHhCCCCCCCeeCCCHHHHHHHHHHHHHHH-HCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcch
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred cccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccc
Q psy2393 171 CECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDIS 250 (576)
Q Consensus 171 c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~is 250 (576)
|+.||+.+++.+|++|+|||||++++++.++||||+| +++++.+.++ +++..||+..++++.+||+ .|++|||||
T Consensus 156 c~~~G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l--~~~~~~l~~~-~~~~~wp~~~~~~~~~wl~--~gl~dw~IS 230 (722)
T 1rqg_A 156 CEVCGRPLTPEILINPRCAICGRPISFRDSAHYYIKM--QDFAERLKRW-IEKQPWKPNVKNMVLSWIE--EGLEERAIT 230 (722)
T ss_dssp CSSSCCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECG--GGTHHHHHHH-HHSSCCCHHHHHHHHHHHT--TCCCCEECE
T ss_pred hhhcccccChhhccCCcccCCCcEeEEEEeccEEEEh--HHHHHHHHHH-HHhCCCCHHHHHHHHHHHH--CCCccccee
Confidence 9999999999999999999999999999999999999 9999999999 7766699999999999996 699999999
Q ss_pred cCCCCCCeecCC----CCCcEEEEEeecccchhhhcchhhhhCCCCCccccccccccccc--CCCcceEEEeeecCcchh
Q psy2393 251 RDAPYFGIKIPN----TLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFIS--SPNTEQYHFIGKDIFYFH 324 (576)
Q Consensus 251 R~~~~WG~~iP~----~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~--~~~~~~i~~~G~D~~~fh 324 (576)
|++ +||+|+|. .+++++|||||++++|++..+.+++..|.+ .+|+.||+ +++...+|++|+|+++||
T Consensus 231 R~~-~WG~piP~~~~g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~------~~~~~~w~~pd~~~~~~h~~GkDii~fH 303 (722)
T 1rqg_A 231 RDL-NWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKP------NEWKKYWLNIDGQTRVIHFIGKDNIPFH 303 (722)
T ss_dssp ECC-SSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCT------TTTHHHHBCSSCCEEEEEEEEGGGHHHH
T ss_pred ccc-cCccccCccccCCCCCEEEEEeccccchhhhHHHHHhhcCCc------hHHHhccCCCCCCCeeEEEccccccccc
Confidence 998 99999995 789999999999999998877677666532 46888997 777778999999999999
Q ss_pred HhHHHHHHHhcC----------CCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCc
Q psy2393 325 ILFWPAILKFSG----------RKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDI 394 (576)
Q Consensus 325 ~~~~~a~l~~~~----------~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~ 394 (576)
..+|||++++++ .+.|+++++||||+++|+|||||+||+|+|.++++. ||+|++|||+++.++. .+|+
T Consensus 304 ~~~wpA~l~~~~~~l~~d~~rg~~~Pk~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~~-ygaDalR~~ll~~~~~-~~D~ 381 (722)
T 1rqg_A 304 AIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDV-FPADYLRYYLTTIMPE-TRDS 381 (722)
T ss_dssp HTHHHHHHHTTCCBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTTT-SCHHHHHHHHHHTCCS-SSCE
T ss_pred hhhhHHHHhccCCCcccccccCCCCCCEEEEeeeEEeCCeeeeeeCCCcCCHHHHHHh-cCchHHHHHHHhcCCC-CCCC
Confidence 999999999875 678899999999999999999999999999999999 9999999999997554 5899
Q ss_pred ccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCC--cccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy2393 395 DFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNM--KWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVI 471 (576)
Q Consensus 395 ~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~--~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~ 471 (576)
+||++.+.+..|++++++++|+++|+.+++.+++++.++. .+.. | .++++.+..+.+.+.++|++|+|+.|++.|+
T Consensus 382 ~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~~~~~~d-~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~ 460 (722)
T 1rqg_A 382 DFSFSDFKVRINEELVNNLGNFVHRALTFVNRYFDGVVPERGELDELD-REALEEIEKAFKEVGELIMNYRFKDALKRVM 460 (722)
T ss_dssp EECHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHSTTBCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCHHH-HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999889999999999999999999887766653 2222 5 8999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCcc-cccccccCCCCCc
Q psy2393 472 EQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPL-QWINIFTPLTQNH 550 (576)
Q Consensus 472 ~~~~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~~-~~~~~~~~~~~g~ 550 (576)
+|++.+|+|++.++||.+.++ ...++++++++++++++.+++||+|||||+||+||+.||.+.. .|+.. .+++||
T Consensus 461 ~~~~~~n~Yi~~~kpw~~~k~--~~~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~~~~~~~w~~~--~~~~g~ 536 (722)
T 1rqg_A 461 SLASFGNRYFDHKQPWKTAKE--DKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLDEVKRWEFR--ELPAGH 536 (722)
T ss_dssp HHHHHHHHHHHTTCHHHHTTT--CHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCCSCCCSSCC--CCCTTC
T ss_pred HHHHHHHHHHHhcCchhhcCC--CHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHcCCCcccCchhc--cCCCCC
Confidence 999999999999999988754 3456778889999999999999999999999999999998765 78763 246799
Q ss_pred ccCCCCCCccCCChHHHHHHHh
Q psy2393 551 KINKYRHLMTRVDKNIVDNLLK 572 (576)
Q Consensus 551 ~~~~~~~lf~r~d~~~~~~~~~ 572 (576)
.++++++||+|||.++++++.+
T Consensus 537 ~~~~~~~lf~ri~~~~~~~~~~ 558 (722)
T 1rqg_A 537 KVRKPEILFKKVTDDQIIYFIL 558 (722)
T ss_dssp BCCCCCCSCCCCCHHHHHHHHH
T ss_pred CcCCCCCCcCCCCHHHHHHHHh
Confidence 9999999999999999987764
No 2
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=2.9e-108 Score=899.63 Aligned_cols=546 Identities=44% Similarity=0.843 Sum_probs=506.1
Q ss_pred cCCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHH
Q psy2393 8 FKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINN 87 (576)
Q Consensus 8 ~~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~ 87 (576)
++++++|+||+|||||||++||||+|+++++|+++||++++| ++|.+++|+|+||+||+.+|++.|+++++++++
T Consensus 14 ~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G-----~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~ 88 (560)
T 3h99_A 14 TQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRG-----HEVNFICADDAHGTPIMLKAQQLGITPEQMIGE 88 (560)
T ss_dssp ---CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHH
T ss_pred CCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcC-----CeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHH
Confidence 457789999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCC
Q psy2393 88 ISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQY 167 (576)
Q Consensus 88 ~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~ 167 (576)
+.+.|+++|++|||++|.+++|+++.|.+.++++|.+|. ++|++|++++.+|||+.|+++|++++|+|+||.|+..+++
T Consensus 89 ~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~-~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~ 167 (560)
T 3h99_A 89 MSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLK-ENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQY 167 (560)
T ss_dssp HHHHHHHHHHHTTCCCSEEEESSSHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEE
T ss_pred HHHHHHHHHHHcCCCCCCceeCCCHHHHHHHHHHHHHHH-HCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccc
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCc
Q psy2393 168 GDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDW 247 (576)
Q Consensus 168 g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw 247 (576)
|+.|+.||+.+++.++++|+|++||++++.+.++||||++ +++++.+.++ +++..+||..++.+.+|++ .+++||
T Consensus 168 gd~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l--~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~--~~l~D~ 242 (560)
T 3h99_A 168 GDNCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDL--PSFSEMLQAW-TRSGALQEQVANKMQEWFE--SGLQQW 242 (560)
T ss_dssp TTBCTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECG--GGGHHHHHHH-HHTSCSCHHHHHHHHHHHH--HCCCCE
T ss_pred cchhhhccccCChhhhcCCccccCCCCceEEecceEEEEH--HHHHHHHHHH-HHhCCCCHHHHHHHHHHHh--cCCCCC
Confidence 9999999999999999999999999999999999999999 9999999999 7778899999999999998 799999
Q ss_pred ccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCccccccccccccc-CCCcceEEEeeecCcchhHh
Q psy2393 248 DISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFIS-SPNTEQYHFIGKDIFYFHIL 326 (576)
Q Consensus 248 ~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~-~~~~~~i~~~G~D~~~fh~~ 326 (576)
||||+..+||+|+|.++++++|||||++++|++..+.++...|.. .+|+.||| +.+++++|++|+||++||++
T Consensus 243 ~IsR~~~~WG~~iP~~~~~viyvW~da~~~y~s~~~~~~~~~~~~------~~~~~~wp~~~~~~~~~~~G~D~~~fh~~ 316 (560)
T 3h99_A 243 DISRDAPYFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDS------VSFDEYWKKDSTAELYHFIGKDIVYFLSL 316 (560)
T ss_dssp ECEEESSCSSCBCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCS------SHHHHHHBTTCCSEEEEEEEGGGHHHHHT
T ss_pred CccccCCcCCeeCCCCCCceEEeCcccchhHHHHHHHHhhccCCh------hhHHHhCcCCCCceeEEEeccccchhHHH
Confidence 999998789999999999999999999999999887666554421 57888994 55678899999999999999
Q ss_pred HHHHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhh
Q psy2393 327 FWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVN 406 (576)
Q Consensus 327 ~~~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~ 406 (576)
+|+++++++|++.|+.+++||||+++|+|||||+||+|+|.|++++ ||+|++|||+++..+....|++|+++.+.+..|
T Consensus 317 ~~~a~l~~~g~~~p~~v~~hg~v~~~G~KMSKS~GNvv~p~d~i~~-~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~ 395 (560)
T 3h99_A 317 FWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH-FDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVN 395 (560)
T ss_dssp HHHHHHHHTTBCCCSEEEEECCEEETTEECCTTTTCCCBHHHHHHH-SCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEEeEEEeCCeeccccCCCcCCHHHHHHH-cCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 999999999999866555789999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcCc
Q psy2393 407 SDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKP 486 (576)
Q Consensus 407 ~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k~ 486 (576)
++++++++|+++|+.+++.+++++.++.. ..| .|+++.+..+++.+.++|++|+|+.|+++|++|++.+|+|++.++|
T Consensus 396 ~~l~~~l~n~~~R~~~~~~~~~~~~~~~~-~~d-~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~~~~n~Yi~~~kp 473 (560)
T 3h99_A 396 ADIVNKVVNLASRNAGFINKRFDGVLASE-LAD-PQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQAP 473 (560)
T ss_dssp HHCCCCCTHHHHTTHHHHHHHSTTBCCSS-CSC-HHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCc-ccc-HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999988876665542 236 9999999999999999999999999999999999999999999999
Q ss_pred cccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCcccccccccCCCCCcccCCCCCCccCCChHH
Q psy2393 487 WKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLTQNHKINKYRHLMTRVDKNI 566 (576)
Q Consensus 487 ~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~~~~~~~~~~~~~g~~~~~~~~lf~r~d~~~ 566 (576)
|.+.+++....++.+++.++.++++.+++||+|||||+||+||+.||.+ ..|+.....+ .|+.++++++||+|||.++
T Consensus 474 w~l~k~~~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~~-~~w~~~~~~~-~~~~i~~~~~lf~ri~~~~ 551 (560)
T 3h99_A 474 WVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE-LTWDGIQQPL-LGHKVNPFKALYNRIDMRQ 551 (560)
T ss_dssp HHHTTSTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTSC-CCTGGGGSCC-CSCBCCCCSCSCCCCCHHH
T ss_pred hhhcCCcCcHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHcCCC-CChhhhhccC-CCCCCCCCCcCCCCCCHHH
Confidence 9776543345566778888999999999999999999999999999998 8898776655 5999999999999999999
Q ss_pred HHHHHhccC
Q psy2393 567 VDNLLKNKN 575 (576)
Q Consensus 567 ~~~~~~~~~ 575 (576)
|+++++..|
T Consensus 552 ~~~~~~~~~ 560 (560)
T 3h99_A 552 VEALVEASK 560 (560)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHhhcC
Confidence 999998654
No 3
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=2.9e-100 Score=836.08 Aligned_cols=520 Identities=23% Similarity=0.393 Sum_probs=452.2
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHH
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~ 88 (576)
+..++|+||+|+|||||.||||||++++++|+++||+||+| ++|.|++||||||+||+.+|+++|++|++++++|
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G-----~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~ 80 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKG-----ERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAV 80 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTT-----CCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcC-----CCccccCccCcChHHHHHHHHHcCCCHHHHHHHH
Confidence 46689999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCC
Q psy2393 89 SSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYG 168 (576)
Q Consensus 89 ~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g 168 (576)
.+.|++++++|||++|.+++|++++|.+.++++|.+|+ ++|+||++...++||+.|+++|++++|++.|+.||
T Consensus 81 ~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~-~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g------ 153 (542)
T 3u1f_A 81 AGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLE-QKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDG------ 153 (542)
T ss_dssp HHHHHHHHHHHTCCCSEEEETTCHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTS------
T ss_pred HHHHHHHHHHhCCccCcCccCCCHHHHHHHHHHHHHHh-hcCcEEecceeEEeeccCcccchhhhhhccccccC------
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999998665
Q ss_pred CccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC---CCChhHHHHHHHHHhhcCCCC
Q psy2393 169 DFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK---RLQPEIVNKIKEWLEKDNKFN 245 (576)
Q Consensus 169 ~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~ 245 (576)
+.| ++|++||++++.+.++|||+++ +++++.+.++ ++.. .+|+..++...+|++ ++++
T Consensus 154 ~~~--------------~~~~~sg~~ve~~~~~~~f~~l--~~~~~~l~~~-~~~~~~~~~P~~~~~~~~~~~~--~~l~ 214 (542)
T 3u1f_A 154 NPC--------------KVSLESGHVVTWVSEENYMFRL--SAFRERLLEW-YHANPGCIVPEFRRREVIRAVE--KGLP 214 (542)
T ss_dssp CEE--------------EEETTTCCBEEEEEEEEEEECG--GGGHHHHHHH-HHHCTTSEESHHHHHHHHHHHH--HCCC
T ss_pred ccc--------------cccCCCCCcceeeccccceecc--hhHHHHHHHH-HhhcccccCCchhhHhHhhhhh--cccc
Confidence 334 5789999999999999999999 9999999999 5442 357778889999998 7899
Q ss_pred CcccccCCCC----CCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCc
Q psy2393 246 DWDISRDAPY----FGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIF 321 (576)
Q Consensus 246 dw~isR~~~~----WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~ 321 (576)
|||||||+ + ||+|+|.++++++|||+|++.+|++..+......|....+.++......||.+ +|++|+||+
T Consensus 215 Dw~ISRq~-~~~~~WGipiP~~~~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d----~~~~G~D~~ 289 (542)
T 3u1f_A 215 DLSVSRAR-ATLHNWAIPVPGNPDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPAD----VHVIGKDIL 289 (542)
T ss_dssp CEECEEEG-GGGTTCSCEETTEEEEEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCS----EEEEEGGGH
T ss_pred ccCccccc-cCcCCCCCccCCCcCeeeeeeeccchhhhhhhhccccccCCcccccchhhhhcCCcce----EEEeccccc
Confidence 99999998 5 99999999999999999999999988776655554321111111111223433 999999999
Q ss_pred chhHhHHHHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhH
Q psy2393 322 YFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSF 401 (576)
Q Consensus 322 ~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~ 401 (576)
+||+.+|+|++++.|.++|+.+++||||..+|+|||||+||+|+|.+++++ ||+|+||||+++.++ ...|++||++.+
T Consensus 290 ~fh~~~~~a~l~~~g~~~~~~v~~hg~l~~~G~KMSKSlGNvi~p~~~i~~-ygaD~lR~~l~~~~~-~~~d~~fs~~~~ 367 (542)
T 3u1f_A 290 KFHAIYWPAFLLSAGLPLPKKIVAHGWWTKDRKKISKSLGNVFDPVEKAEE-FGYDALKYFLLRESG-FSDDGDYSDKNM 367 (542)
T ss_dssp HHHHTHHHHHHHHHTCCCCSCEEEECCCEETTBCCBTTTTBCCCHHHHHHH-HCHHHHHHHHHHHCC-TTSCCEECHHHH
T ss_pred ccccchhHHHHHhhcccccceeccccceecCCceeccccCCCCChhHHHhh-cCchHHHHHHHhcCc-ccccccccHHHH
Confidence 999999999999999999999999999999999999999999999999999 999999999998755 458899999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCC--cccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy2393 402 ISCVNSDLIGKYINIASRSSSFIEKYFKGYLNM--KWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINI 479 (576)
Q Consensus 402 ~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~--~~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~ 479 (576)
.+..|++++++++|+++|+..+..+ .++.++. .+...++|+++.+..+.+.+.++|++|+|++|++.|++|++.+|+
T Consensus 368 ~~~~n~~l~n~l~N~~~r~~~~~~~-~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~ 446 (542)
T 3u1f_A 368 IARLNGELADTLGNLVMRCTSAKIN-VNGEWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINA 446 (542)
T ss_dssp HHHHHHTTTTTHHHHHHHHHCTTTS-TTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHhhhc-ccCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988899999999999998765432 3344433 222223999999999999999999999999999999999999999
Q ss_pred hhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCcccc---cccc-cCCCCCcccCC-
Q psy2393 480 FFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQW---INIF-TPLTQNHKINK- 554 (576)
Q Consensus 480 y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~~~~---~~~~-~~~~~g~~~~~- 554 (576)
|++..+||.+.+++ ..++++++++++++++.+++||+|||||+||+||+.||++...+ +... ..+++||.|++
T Consensus 447 Y~~~~~pw~l~k~d--~~~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~Lg~~~~~~~~~~~~~~~~l~~g~~i~~~ 524 (542)
T 3u1f_A 447 YVTDMAPWKLVKTD--PERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVPEVHRKGIENFEFGAVPPGTRLGPA 524 (542)
T ss_dssp HHHHHCHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCCGGGGSSGGGGSTTCSCTTCBCCCC
T ss_pred HHHhcCchhhhcCC--HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHCCCCCccccchhhccccCCCCCCCcCCc
Confidence 99999999876543 45678889999999999999999999999999999999986433 2222 34678999964
Q ss_pred --CCCCccCCChHHHHH
Q psy2393 555 --YRHLMTRVDKNIVDN 569 (576)
Q Consensus 555 --~~~lf~r~d~~~~~~ 569 (576)
+++||+|||.|++++
T Consensus 525 ~~~~~LF~kie~e~~e~ 541 (542)
T 3u1f_A 525 VEGEVLFSKRSTENTKS 541 (542)
T ss_dssp CTTCCSSCCCCCCC---
T ss_pred CCCCCCcCCCChhhhhc
Confidence 579999999988764
No 4
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=3.6e-98 Score=817.53 Aligned_cols=522 Identities=24% Similarity=0.399 Sum_probs=456.4
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHH
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~ 88 (576)
+++++++||+|+|||||++||||+|+++++|+++||+|++| ++|.+++|+|+||++|+.+|++.|.+|+++++++
T Consensus 23 ~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G-----~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~ 97 (564)
T 3kfl_A 23 KKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKG-----EEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSV 97 (564)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHT-----CCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHH
T ss_pred cCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC-----CcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHH
Confidence 45689999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCC
Q psy2393 89 SSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYG 168 (576)
Q Consensus 89 ~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g 168 (576)
.+.|+++|++|||++|.|++|+++.|.+.++++|.+|+ ++|+||++...+|||+.|+++++++++...|+.+ |
T Consensus 98 ~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~-~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~------g 170 (564)
T 3kfl_A 98 SSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLA-AKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRD------G 170 (564)
T ss_dssp HHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHH-HHTCEEEEEEEEEEETTTTEEECGGGEEEEECTT------S
T ss_pred HHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHHHHHH-HCCCEEEeeeeEEecCCcCCCCCHHHhccCcCCC------C
Confidence 99999999999999999999999999999999999999 9999999999999999999999999998877533 3
Q ss_pred CccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcC--CC-CChhHHHHHHHHHhhcCCCC
Q psy2393 169 DFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD--KR-LQPEIVNKIKEWLEKDNKFN 245 (576)
Q Consensus 169 ~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~--~~-~~~~~~~~~~~~l~~~~~~~ 245 (576)
..|. .+.+||++++.+.++||||+| +++++.+.++ +++ .+ +|+..++.+.+|++ .|++
T Consensus 171 ~~c~--------------~~~~~g~~~~~~~~~~~f~~l--~~~~~~l~~~-~~~~~~~i~P~~~~~~~~~wl~--~gl~ 231 (564)
T 3kfl_A 171 KPCK--------------VSLESGHVVTWVEEENYMFRL--SAFRERLLKY-FHDHPNCIVPEFRRREVIKTVE--KGLF 231 (564)
T ss_dssp CEEE--------------EETTTSCBCEEEEEEEEEECG--GGGHHHHHHH-HHHCTTSEESHHHHHHHHHHHH--HCCC
T ss_pred CEec--------------cccCCCCccEEEecceeEEEH--HHHHHHHHHH-HHhCCCccCCHHHHHHHHHHHh--CCCC
Confidence 3342 123689999999999999999 9999999999 654 23 57778899999998 8999
Q ss_pred Cccccc----CCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccc--cccccCCCcceEEEeeec
Q psy2393 246 DWDISR----DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNF--DEFISSPNTEQYHFIGKD 319 (576)
Q Consensus 246 dw~isR----~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~w~~~~~~~i~~~G~D 319 (576)
|||||| +. +||+|+|+++++++||||||+++|++.++++..+.+.. .-..+| +.+||.+ +|++|+|
T Consensus 232 D~~ISR~~~~~~-~WGipiP~~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~---~~~~~~~~~~~wp~d----v~~~GkD 303 (564)
T 3kfl_A 232 DLSISRKRESVM-NWSIPVPGDERHCIYVWLDALFNYYTGALTRVATDGTE---TLDEDHHALNRWPAD----VHVVGKD 303 (564)
T ss_dssp CEECEEEGGGGT-TCSCEETTEEEEEECHHHHHHTHHHHHHHEEECTTSCE---EECSSSTTTTCCSCS----EEEEEGG
T ss_pred CccccCcCCCCC-CCCeecCCCCCCEEEEeccCcHHHHHHhCccccccccc---cchhcchhhhcCccc----eEEEeec
Confidence 999999 55 99999999999999999999999999876544332200 000137 7899764 9999999
Q ss_pred CcchhHhHHHHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchh
Q psy2393 320 IFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQ 399 (576)
Q Consensus 320 ~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~ 399 (576)
|++||+++|+++++++|.++|+.+++||||..+|+|||||+||+|+|.+++++ ||+|++|||+++..+.. +|++||++
T Consensus 304 ii~FH~~~wpa~L~a~g~~~~~~v~~hg~v~~~G~KMSKS~GNvV~p~d~i~~-~G~DalR~~ll~~~~~~-~D~~fs~~ 381 (564)
T 3kfl_A 304 ILKFHAIYWPAFLMSAELPLPERLVSHGWWTKDHKKISKSLGNAFDPVEKAKE-FGIDALKYFLMRESNFQ-DDGDYSDK 381 (564)
T ss_dssp GHHHHHTHHHHHHHHTTCCCCSCEEEECCEEETTEECCTTTTCCCCHHHHHHH-HCHHHHHHHHHHHCCSS-CCEECCHH
T ss_pred ccchHHHHHHHHHHhCCCCCCcEEEEcccEeeCCccccccCCCCCCHHHHHHH-cCcHHHHHHHHHcCCcc-cCCCCCHH
Confidence 99999999999999999999999999999988999999999999999999999 99999999999965544 88999999
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCc--ccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2393 400 SFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNMK--WVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFI 477 (576)
Q Consensus 400 ~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~--~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~ 477 (576)
.+.+..|++++++++|+++|+.+++. ++++.+|.. +...+.++++.+..+.+.+.++|++++|++|+++|++|+..+
T Consensus 382 ~~~~~~n~~l~~~l~N~~~R~~~~~~-~~~g~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~~~~ 460 (564)
T 3kfl_A 382 NMVARLNGELADTLGNLVSRCVAPKI-NVNGMWPEPAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSL 460 (564)
T ss_dssp HHHHHHHHTTTTTHHHHHHHHHCTTT-STTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 99998889999999999999999887 556656542 222239999999999999999999999999999999999999
Q ss_pred HHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCc--c-cccccccC-CCCCcccC
Q psy2393 478 NIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP--L-QWINIFTP-LTQNHKIN 553 (576)
Q Consensus 478 n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~--~-~~~~~~~~-~~~g~~~~ 553 (576)
|+|++.++||.+.++ ...+++++++++.+++++++++|+||||++||+||+.||.+. . .|+.+... +++||.|+
T Consensus 461 n~Y~~~~kpW~l~~~--~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~~~~~~~~~~g~~~~ 538 (564)
T 3kfl_A 461 NAYVTENAPWKLVKM--DTARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGVPEAARVGMENYLFGIVKPGTKIA 538 (564)
T ss_dssp HHHHHHHCHHHHTTT--CHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCCGGGSSSGGGSSSCCSCTTCBCC
T ss_pred HHHHHhcCChhhhcC--CHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCCcccccCHhHhhcccCCCCCCcC
Confidence 999999999987654 345677888999999999999999999999999999999974 3 68776543 67899999
Q ss_pred CC---CCCccCCChHHHHHHHhcc
Q psy2393 554 KY---RHLMTRVDKNIVDNLLKNK 574 (576)
Q Consensus 554 ~~---~~lf~r~d~~~~~~~~~~~ 574 (576)
++ ++||+|||.++++++.+++
T Consensus 539 ~~~~~~~lf~r~~~~~~~~~~~~~ 562 (564)
T 3kfl_A 539 GLAEGQVVFQKVTLPTEEGERSSK 562 (564)
T ss_dssp CCCTTCCSSCCCCCC---------
T ss_pred CCCCCCCCcCCCCcchhhhhhhcc
Confidence 99 9999999999999988765
No 5
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=1.1e-95 Score=796.22 Aligned_cols=505 Identities=24% Similarity=0.405 Sum_probs=436.2
Q ss_pred CCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHH
Q psy2393 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISS 90 (576)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 90 (576)
+++++||+|+|||||++||||+|+++++|+++||+|++| ++|.+++|+||||++|+.+|++.|.+|+++++++.+
T Consensus 24 ~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G-----~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~ 98 (536)
T 4dlp_A 24 REKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNG-----MDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTS 98 (536)
T ss_dssp CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcC-----CcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHH
Confidence 468999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCc
Q psy2393 91 NRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDF 170 (576)
Q Consensus 91 ~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~ 170 (576)
.|+++|++|||++|.|++|+++.|.+.++++|.+|. ++|++|++.+.+|||+.|++++++++++.. ..|.
T Consensus 99 ~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~-~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~--------~~g~- 168 (536)
T 4dlp_A 99 AFRRMAEVLNSSNDDYIRTSEERHYKASQAIWQAMV-ANGDIYKGGYAGWYSVRDEAYYGEEETEVR--------ADGV- 168 (536)
T ss_dssp HHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEETTTTEEECGGGCEEC--------TTSC-
T ss_pred HHHHHHHHcCCCCCcceeCCCHHHHHHHHHHHHHHH-HCCCEEEeceeeeecCCcCcccCHHHhhcC--------CCCC-
Confidence 999999999999999999999999999999999999 999999999999999999999999987532 0121
Q ss_pred cccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC--C-CChhHHHHHHHHHhhcCCCCCc
Q psy2393 171 CECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK--R-LQPEIVNKIKEWLEKDNKFNDW 247 (576)
Q Consensus 171 c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~--~-~~~~~~~~~~~~l~~~~~~~dw 247 (576)
+|++||++++.+.++||||++ +++++.+.++ +++. + .|+..++.+.+|++ ++++||
T Consensus 169 ----------------~c~~~g~~~e~~~~~~~f~~l--~~~~~~l~~~-~~~~~~~i~P~~~~~~~~~~l~--~~l~D~ 227 (536)
T 4dlp_A 169 ----------------RYGPQGTPVEWVEEESYFFRL--SAYQDKLLDL-YENNPGFIMPAERRNEIVSFVK--SGLKDL 227 (536)
T ss_dssp ----------------EECTTSSBCEEEEEEEEEECG--GGGHHHHHHH-HHHCTTSEESHHHHHHHHHHHH--TCCCCE
T ss_pred ----------------cccCCCCcceEEeccceEEec--HHHHHHHHHH-HHhCCCccCcHHHHHHHHHHHh--cCCCcc
Confidence 466788999999999999999 9999999999 6553 3 47778899999999 899999
Q ss_pred ccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhH
Q psy2393 248 DISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILF 327 (576)
Q Consensus 248 ~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~ 327 (576)
||||++.+||+|+|+++++++|||||++++|++.++. ... ..+|+.+||.+ +|++|+||++||+++
T Consensus 228 ~ISR~~~~WGipiP~~~~~v~yvWfda~~~y~s~~~~-~~~---------~~~~~~~~p~d----v~~~G~D~~~fh~~~ 293 (536)
T 4dlp_A 228 SISRTTFDWGIPVPGDEKHVMYVWVDALTNYITALGY-PDT---------TDERWAYWPAN----AHIIGKDISRFHAVY 293 (536)
T ss_dssp ECEEC--CCSCBCTTCTTSEECHHHHHHHHHHHTTTT-TCT---------TSGGGGGCSCS----EEEEEGGGHHHHHTH
T ss_pred CCccCCCcCCeeCCCCCCCceEEeeCCcHHHHHhcCC-CCC---------chHHHhhCCcc----eEEeechHHHHHHHH
Confidence 9999976899999999999999999999999987652 211 14688899764 999999999999999
Q ss_pred HHHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhH
Q psy2393 328 WPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNS 407 (576)
Q Consensus 328 ~~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~ 407 (576)
|+++++++|.++|+.+++||||+++|+|||||+||+|+|.+++++ ||+|++|||+++..+. ..|++||++.+.+..|+
T Consensus 294 ~~a~l~a~g~~~~~~v~~hg~v~~~G~KMSKS~GNvi~p~d~i~~-~GaDalR~~ll~~~~~-~~d~~fs~~~~~~~~n~ 371 (536)
T 4dlp_A 294 WPAFLMSAQLPLPKRVFAHGFLFNRGEKMSKSVGNVIDPFELVER-YGLDQLRYFLMREVPF-GQDGSYSHEAIVNRTNA 371 (536)
T ss_dssp HHHHHHHTTCCCCSCEEEECCEEC------------CCHHHHHHH-HCHHHHHHHHHHHSCT-TSCEECCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcEEEeeeeEeeCCceecccCCCCCCHHHHHHH-cCcHHHHHHHHhcCCC-CCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 9999999999996444 47899999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCc--ccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcC
Q psy2393 408 DLIGKYINIASRSSSFIEKYFKGYLNMK--WVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNK 485 (576)
Q Consensus 408 ~~~~~~~n~~~R~~~~~~~~~~~~~~~~--~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k 485 (576)
+++++++|+++|+.+++.+++++.+|.. +...++|+++.+.++.+.+.++|++|+|++++++|++|++.+|+|++.++
T Consensus 372 ~l~~~l~N~~~R~~~~~~~~~~~~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~Y~~~~k 451 (536)
T 4dlp_A 372 DLANDLGNLAQRSLSMIAKNCEGKVPQPGAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVVAEANRYFAGQE 451 (536)
T ss_dssp HCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999988877666542 22223999999999999999999999999999999999999999999999
Q ss_pred ccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCc--cccccccc-CCCCCcccCCCCCCccCC
Q psy2393 486 PWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP--LQWINIFT-PLTQNHKINKYRHLMTRV 562 (576)
Q Consensus 486 ~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~--~~~~~~~~-~~~~g~~~~~~~~lf~r~ 562 (576)
||.+.++ ...+++++++++.++++.++++|+||||++||+||+.||++. ..|+.+.. .+++||.|+++++||+||
T Consensus 452 ~w~l~~~--~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aeei~~~L~~~~~~~~~~~~~~~~~~~g~~~~~~~~lf~ri 529 (536)
T 4dlp_A 452 PWALRKT--DPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAVPADKRQFADVLASPLAGGTDLPAPQPVFPRY 529 (536)
T ss_dssp HHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHTTTCCTTSCSTHHHHHCCCCTTCBCCCCCCSSCCC
T ss_pred chhhcCC--CHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCCCccccCHHHhhhccCCCCCCcCCCCCCCCCC
Confidence 9877543 234567788999999999999999999999999999999974 46766543 367899999999999999
Q ss_pred ChHHHHH
Q psy2393 563 DKNIVDN 569 (576)
Q Consensus 563 d~~~~~~ 569 (576)
|.++.|+
T Consensus 530 ~~~~~~~ 536 (536)
T 4dlp_A 530 VEADEQN 536 (536)
T ss_dssp C------
T ss_pred CCcccCC
Confidence 9877653
No 6
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=1.2e-91 Score=763.78 Aligned_cols=509 Identities=23% Similarity=0.415 Sum_probs=443.2
Q ss_pred CCcccCCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHH
Q psy2393 4 HDSEFKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKE 83 (576)
Q Consensus 4 ~~~~~~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~ 83 (576)
++---.+++.++|++|+|||||++||||+|+++++|+++||++++| ++|.+++|||+||+||+.+|++.|.++++
T Consensus 4 ~~~~~~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G-----~~V~~~~g~D~~G~~i~~~a~~~g~~~~~ 78 (524)
T 2x1l_A 4 HHHHHGGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDG-----YDVRYLTGTDVHGQKMAETAAKEGIPAAE 78 (524)
T ss_dssp -------CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEECCCSHHHHHHHHHHTSCHHH
T ss_pred cccccCCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcC-----CceeeeCCcCcccHHHHHHHHHcCCCHHH
Confidence 3334567789999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceec-cCCCCC
Q psy2393 84 FINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKG-ECPICN 162 (576)
Q Consensus 84 ~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~-~~p~c~ 162 (576)
+++++.+.|++++++|||++|.+++|+++.|.+.++++|.+|+ ++|++|++++.+|||+.|++++++.+|+. .|
T Consensus 79 ~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~-~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~---- 153 (524)
T 2x1l_A 79 LARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKAIWKRMA-DAGDIYLDAYKGWYSIRDERFFTENETTEQPD---- 153 (524)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEETTTTEEECGGGEEECTT----
T ss_pred HHHHHHHHHHHHHHHcCCcCCCCeecCCHHHHHHHHHHHHHHH-HCCCEEeeeeeeeccCccCccccHHHhccCCC----
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999998853 22
Q ss_pred CCCCCCCccccCCCcCCCCccCCCccc-CCCCccEEeeecceeEecCchhhHHHHHHhhhcCC---CCChhHHHHHHHHH
Q psy2393 163 AKDQYGDFCECCSSIYTPTKLINPYSI-LSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK---RLQPEIVNKIKEWL 238 (576)
Q Consensus 163 ~~~~~g~~c~~cg~~~~~~~l~~p~~~-~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l 238 (576)
| +.|+ +||++++.+.++|||+++ +++++.+.++ +++. ..|+..++.+.+|+
T Consensus 154 ------------G----------~~c~~~~g~~v~~~~~~qwF~~l--~~~~~~l~~~-~~~~~~~i~p~~~~~~~~~~~ 208 (524)
T 2x1l_A 154 ------------G----------TRIATETGAPVTWTEEQTYFFRL--SAYTDRLLAL-YEEHPEFIGPDARRNEIVSFV 208 (524)
T ss_dssp ------------S----------CEEETTTCCBEEEEEEEEEEECG--GGSHHHHHHH-HHHCGGGEESHHHHHHHHHHH
T ss_pred ------------C----------CccccccCCcceEEecCCeEeeH--HHHHHHHHHH-HHhCCCeeCCHHHHHHHHHHH
Confidence 1 2567 899999999999999999 9999999999 6542 35777889999999
Q ss_pred hhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeee
Q psy2393 239 EKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGK 318 (576)
Q Consensus 239 ~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~ 318 (576)
. .+++|||||||+..||+|+|..+++++|||||++.+|++..+. ..+. ...+..+||.+ +|++|+
T Consensus 209 ~--~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds~~~~~~~~g~-p~~~--------~~~~~~~~p~d----i~~~G~ 273 (524)
T 2x1l_A 209 S--GGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGVGF-PDTE--------SESFRRYWPAD----LHMIGK 273 (524)
T ss_dssp T--TCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHHHHTTTT-TCTT--------SHHHHHHCSCS----EEEEEG
T ss_pred H--cCCcccceECCCCCcCccCCCCCCCEEEEecCCchHHHHHcCC-CCCc--------hHHHHhhCCCe----EEEEee
Confidence 7 6899999999985699999987889999999999999876542 1111 12567788654 999999
Q ss_pred cCcchhHhHHHHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccch
Q psy2393 319 DIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNS 398 (576)
Q Consensus 319 D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~ 398 (576)
||++||+.+|+|+++++|.++|+.+++||||+++|+|||||+||+|+|.|++++ ||+|++|||+++.+ +..+|++||+
T Consensus 274 D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~~G~KMSKS~GN~v~p~d~i~~-~g~DalR~~ll~~~-~~~~d~~fs~ 351 (524)
T 2x1l_A 274 DIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVDT-FGLDQVRYFLLREV-PFGQDGSYNE 351 (524)
T ss_dssp GGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEECSCSEETTTEESSCHHHHHHH-HCHHHHHHHHHHHS-CTTSCEEECH
T ss_pred chhHhHHHHHHHHHHHCCCCCCcEEEECcEEEeCCcccCCcCCCCCCHHHHHHH-cChHHHHHHHHhcC-CCCCCCCcCH
Confidence 999999999999999999988899999999999999999999999999999999 99999999999853 4558999999
Q ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCC--cccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy2393 399 QSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNM--KWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTN 475 (576)
Q Consensus 399 ~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~--~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~ 475 (576)
+.+.+..++.+.++++|+++|+.+++.++.++.++. .... | .++++.+..+.+.+.++|++|+++.|+++|++|+.
T Consensus 352 ~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d-~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~ 430 (524)
T 2x1l_A 352 DAIIGRVNADLANELGNLAQRSLSMVAKNLGAAVPDPGEFTDED-TALLAAADALLERVREHFDVPAMHLALEAIWSVLG 430 (524)
T ss_dssp HHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHH-HHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccchhH-HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999888777788899999999998887765554442 1222 5 89999999999999999999999999999999999
Q ss_pred HHHHhhhhcCccccccCc--ccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCc--ccccccccCCCCCcc
Q psy2393 476 FINIFFDQNKPWKLAKNN--IYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP--LQWINIFTPLTQNHK 551 (576)
Q Consensus 476 ~~n~y~~~~k~~~~~~~~--~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~--~~~~~~~~~~~~g~~ 551 (576)
.+|+|++.++||.+.++. ....+++++++++.++++.++++|+|||||+||+||+.||.+. ..|+.+...+++||.
T Consensus 431 ~~n~y~~~~k~w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~aeei~~~L~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2x1l_A 431 AANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLGQPTDERDFSAIANRIKPGTS 510 (524)
T ss_dssp HHHHHHHHHCHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTCCTTSCSGGGGSSCCCTTCB
T ss_pred HHHHHHHhcCChhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCCccccchhHhhhcCCCCCC
Confidence 999999999998765431 1234567788899999999999999999999999999999874 578765434667999
Q ss_pred cCCCCCCccCCChH
Q psy2393 552 INKYRHLMTRVDKN 565 (576)
Q Consensus 552 ~~~~~~lf~r~d~~ 565 (576)
|+++++||+||+.+
T Consensus 511 ~~~~~~lf~~~~~~ 524 (524)
T 2x1l_A 511 LPAPSGIFPRYQND 524 (524)
T ss_dssp CCCCCCSSCCCC--
T ss_pred CCCCCCCCCCCCCC
Confidence 99999999999864
No 7
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=4.1e-90 Score=747.07 Aligned_cols=488 Identities=25% Similarity=0.441 Sum_probs=407.2
Q ss_pred CCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHH
Q psy2393 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISS 90 (576)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 90 (576)
+++++||.|+|||||++||||+|+++++|+++||++++| ++|.+++|+|+||+||+.+|++.|.+++++++++.+
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G-----~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 78 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRD-----YDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAE 78 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcC-----CceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHH
Confidence 478999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCc
Q psy2393 91 NRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDF 170 (576)
Q Consensus 91 ~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~ 170 (576)
.|+++|++|||++|.+++|+++.|.+.++++|.+|+ ++|++|++...++||+.|++++++.++
T Consensus 79 ~~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~~~~L~-~~G~iY~~~~~~~~~~~~~~~~~~~~~---------------- 141 (497)
T 2csx_A 79 RFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFEECY-KRGDIYLGEYEGWYCVGCEEFKSEAEL---------------- 141 (497)
T ss_dssp HHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHH-HTTCEEEEEC---------------------------------
T ss_pred HHHHHHHHhCCcCCCCccCCCHHHHHHHHHHHHHHH-HCCCEEecceeeccCcccCeEccHHHh----------------
Confidence 999999999999999999999999999999999999 999999999999999999888876544
Q ss_pred cccCCCcCCCCccCC-CcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC--CC-ChhHHHHHHHHHhhcCCCCC
Q psy2393 171 CECCSSIYTPTKLIN-PYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK--RL-QPEIVNKIKEWLEKDNKFND 246 (576)
Q Consensus 171 c~~cg~~~~~~~l~~-p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~~~~d 246 (576)
.+ +.|++||++++.+.+.||||++ +++++.+.++ +++. .+ |...++.+.+|++ .+++|
T Consensus 142 -------------~~~~~c~~~~~~~~~~~~~~wf~~l--~~~~~~l~~~-~~~~~~~~~p~~~~~~~~~~l~--~~~~D 203 (497)
T 2csx_A 142 -------------AEDHTCPIHQKKCEYIKEPSYFFRL--SKYQDKLLEL-YEKNPEFIQPDYRRNEIISFVK--QGLKD 203 (497)
T ss_dssp -----------------------------CCEEEEECT--TSSHHHHHHH-HHHCTTSBCSHHHHHHHHHHHH--HCCCC
T ss_pred -------------ccCCCCCCCCCCCeEEecCceEEEc--HHHHHHHHHH-HHhCCCeeCcHHHHHHHHHHHh--cCCcc
Confidence 33 5677888899999999999999 9999999999 6553 44 5556788899997 68999
Q ss_pred ccccc--CCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchh
Q psy2393 247 WDISR--DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFH 324 (576)
Q Consensus 247 w~isR--~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh 324 (576)
||||| ++..||+|+|.++++++|||||+..+|++.+.. .. ..+||.+ +|++|+||++||
T Consensus 204 w~isR~~~~~~WG~~iP~~~~~~i~vW~ds~~~~~s~~~~--------------~~-~~~~p~d----i~~~G~D~~~~H 264 (497)
T 2csx_A 204 LSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISALED--------------KV-EIYWPAD----LHLVGKDILRFH 264 (497)
T ss_dssp EECEEETTTCCSSEEETTEEEEEECSHHHHHTHHHHTTTT--------------TH-HHHCSCS----CEEEEGGGHHHH
T ss_pred ccccccCCCCCCceecCCCCCceEEEecccchhhcccCCC--------------cc-hhhCCce----EEEeecchhHhH
Confidence 99999 664799999988889999999999988876420 00 1567543 999999999999
Q ss_pred HhHHHHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhh
Q psy2393 325 ILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISC 404 (576)
Q Consensus 325 ~~~~~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~ 404 (576)
+.+|+++++++|.++|+++++||||+++|+|||||+||+|+|+|+++. ||+|++|||+++.+ +...|++||++.+...
T Consensus 265 ~~~~~a~l~~~g~~~~~~~~~~G~v~~~G~KMSKS~GN~i~~~dli~~-~g~DalR~~ll~~~-~~~~d~~fs~~~l~~~ 342 (497)
T 2csx_A 265 TVYWPAFLMSLGYELPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQE-YGLDEVRYFLLREV-PFGQDGDFSKKAILNR 342 (497)
T ss_dssp HTHHHHHHHHHTCCCCSCEEEECCEESSSSBCCTTTTCCCCHHHHHHH-HCHHHHHHHHHHSS-CTTSCEECCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcEEEECcEEEeCCceeCCcCCCCCCHHHHHHH-CCcHHHHHHHHhcC-CcccCCCCChHHHHHH
Confidence 999999999999988999999999999999999999999999999999 99999999999853 4568999999999888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhc
Q psy2393 405 VNSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQN 484 (576)
Q Consensus 405 ~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~ 484 (576)
.++.+.++++|+++|+.+++.+..++.++ ...| .++++.+..+.+.+.++|++++++.|+++|++|++.+|+|++.+
T Consensus 343 ~~~~l~~~l~n~~~R~~~~~~~~~~~~~~--~~~d-~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~ 419 (497)
T 2csx_A 343 INGELANEIGNLYSRVVNMAHKFLGGEVS--GARD-EEYAKIAQESIKNYENYMEKVNFYKAIEEILKFTSYLNKYVDEK 419 (497)
T ss_dssp HHHTCCCCCHHHHHHHHHHHHHHSTTCBC--CCCC-TTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCC--chhH-HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 77788899999999999998876544333 1235 89999999999999999999999999999999999999999999
Q ss_pred CccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCcccccccccCCCCCcccCCCCCCccCCCh
Q psy2393 485 KPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLTQNHKINKYRHLMTRVDK 564 (576)
Q Consensus 485 k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~~~~~~~~~~~~~g~~~~~~~~lf~r~d~ 564 (576)
+||.+.++ ..+.+++++++++.+++++++++|+|||||+||+||+.||.+...|+++..... ||.|+++++||+|||+
T Consensus 420 k~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~L~~~~~~~~~~~~~~~-~~~~~~~~~lf~~~~~ 497 (497)
T 2csx_A 420 QPWALNKE-RKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGEKEFLKELKPYSKN-TYKLGERKILFPKREG 497 (497)
T ss_dssp CHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCSCCCSSCCSCCCS-CBCCCCCCCSSCCCCC
T ss_pred Cchhhccc-ccHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHcCCCccchhhcccccC-CCcCCCCCCCCCCCCC
Confidence 99976543 234567788899999999999999999999999999999988667765421123 9999999999999974
No 8
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=1.2e-89 Score=744.84 Aligned_cols=489 Identities=23% Similarity=0.412 Sum_probs=434.4
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
++++||+|+|||||++||||+|+++++|+++||+|++| ++|.+++|+|+||+||+.+|++.|.++.++++++.+.
T Consensus 3 ~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G-----~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 77 (500)
T 2d5b_A 3 KVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDG-----YRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGR 77 (500)
T ss_dssp CEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCC-----CceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCcc
Q psy2393 92 RKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFC 171 (576)
Q Consensus 92 ~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c 171 (576)
|+++|++|||++|.+++|+++.|.+.++++|.+|+ ++|++|+++..++||+.|++++++.
T Consensus 78 ~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~~~~L~-~~G~iy~~~~~~~~~~~~~~~~~~~------------------- 137 (500)
T 2d5b_A 78 FKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVY-EAGDIYYGEYEGLYCVSCERFYTEK------------------- 137 (500)
T ss_dssp HHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEETTTTEECCTT-------------------
T ss_pred HHHHHHHhCCcCCCCcccCCHHHHHHHHHHHHHHH-HCCCEEecceEEecCCCcCcccCch-------------------
Confidence 99999999999999999999999999999999999 9999999999999999888887754
Q ss_pred ccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC--C-CChhHHHHHHHHHhhcCCCCCcc
Q psy2393 172 ECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK--R-LQPEIVNKIKEWLEKDNKFNDWD 248 (576)
Q Consensus 172 ~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~--~-~~~~~~~~~~~~l~~~~~~~dw~ 248 (576)
+++++.|++||++++.+.++|||+++ +++++.+.++ +++. + .|+..++.+.+|++ ++++|||
T Consensus 138 ----------~l~~g~c~~~~~~v~~~~~~~wf~~l--~~~~~~l~~~-~~~~~~~~~p~~~~~~~~~~l~--~~l~Dw~ 202 (500)
T 2d5b_A 138 ----------ELVEGLCPIHGRPVERRKEGNYFFRM--EKYRPWLQEY-IQENPDLIRPEGYRNEVLAMLA--EPIGDLS 202 (500)
T ss_dssp ----------TSBTTBCTTTCSBCEEEEEEEEEECG--GGGHHHHHHH-HHTCTTSEESHHHHHHHHHHHT--SCCCCEE
T ss_pred ----------hccCCcCCCCCCeeeEEecCceEEEc--HHHHHHHHHH-HHhCCCeeCCHHHHHHHHHHHh--cCCCCee
Confidence 34556788999999999999999999 9999999999 6653 3 37778899999998 7899999
Q ss_pred ccc--CCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHh
Q psy2393 249 ISR--DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHIL 326 (576)
Q Consensus 249 isR--~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~ 326 (576)
||| ++..||+|+|.++++++|||||+.++|++..+. . .+.+++.+|+.+ +|++|+||++||+.
T Consensus 203 iSRp~~~~~WG~piP~~~~~v~~vWfds~~~y~~~~g~-~----------~~~~~~~~~p~d----i~~~G~D~~~fh~~ 267 (500)
T 2d5b_A 203 ISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDY-P----------EGEAYRTFWPHA----WHLIGKDILKPHAV 267 (500)
T ss_dssp CEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTTT-T----------TCHHHHHHGGGE----EEEEEGGGHHHHHT
T ss_pred cccccccccCccccCCCCCCeeEEccccchhhHHHcCC-C----------CCchHHHcCCCe----EEEEeechhhhHHH
Confidence 999 665799999998999999999999999886542 1 112266678653 99999999999999
Q ss_pred HHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhh
Q psy2393 327 FWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCV 405 (576)
Q Consensus 327 ~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~ 405 (576)
+|+++++++|.++|+++++||||++ +|+|||||+||+|+|.|++++ ||+|++|||+++.+ +...|++||++.+.+..
T Consensus 268 ~~~a~~~~~g~~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~~-~g~DalR~~ll~~~-~~~~d~~fs~~~~~~~~ 345 (500)
T 2d5b_A 268 FWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEK-YGRDALRYYLLREI-PYGQDTPVSEEALRTRY 345 (500)
T ss_dssp HHHHHHHHHTCCCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHH-HCHHHHHHHHHHHS-CTTSCEECCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcEEEECceEEeCCCCcccccCCCCCCHHHHHHh-cCcHHHHHHHHhcC-CcccCCCCCHHHHHHHH
Confidence 9999999999988899999999999 999999999999999999999 99999999999853 45689999999998887
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcC
Q psy2393 406 NSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNK 485 (576)
Q Consensus 406 ~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k 485 (576)
++.+.++++|+++|+.+++.+..++.++.. .+ .++++.+..+.+.+.++|++|+++.|+++|++|++.+|+|++.++
T Consensus 346 ~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~--~~-~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k 422 (500)
T 2d5b_A 346 EADLADDLGNLVQRTRAMLFRFAEGRIPEP--VA-GEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKK 422 (500)
T ss_dssp HHHCCCCCHHHHHHHHHHHHHHSTTBCCCC--CC-CGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCch--hH-HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777888999999999888877655444321 14 788899999999999999999999999999999999999999999
Q ss_pred ccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCC-cccccccc--cCCCCCcccCCCCCCccCC
Q psy2393 486 PWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNIS-PLQWINIF--TPLTQNHKINKYRHLMTRV 562 (576)
Q Consensus 486 ~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~-~~~~~~~~--~~~~~g~~~~~~~~lf~r~ 562 (576)
||.+.+++ ..+++++++++.+++++++++|+|||||+||+||+.||.+ ...|++.. ..+.+||+++++++||+||
T Consensus 423 ~w~~~~~~--~~~~~~~~~~l~~~l~~~~~ll~P~~P~~aeei~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~ 500 (500)
T 2d5b_A 423 PWELFKKE--PEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKEEVRLEEAERWGLAEPRPIPEEAPVLFPKK 500 (500)
T ss_dssp HHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCCSSCCGGGGGSSCCSCCCBCCSCCCCSSCCC
T ss_pred chhhccCc--HHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHcCCCcccChhhhhhcccCCCCCCCCCCCCCCCCC
Confidence 99765432 2346678899999999999999999999999999999987 46676532 2356799999999999997
No 9
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=8.5e-81 Score=703.26 Aligned_cols=482 Identities=19% Similarity=0.236 Sum_probs=390.8
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH----cCCCHH--
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK----AGMTPK-- 82 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~----~g~~~~-- 82 (576)
+++++|+|++|||||||.|||||+++++++|+++||+||+| ++|.|++|||+||+||+.++++ .|.++.
T Consensus 31 ~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G-----~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~ 105 (862)
T 1gax_A 31 SGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRG-----FEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDL 105 (862)
T ss_dssp CCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTT-----SEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCC
T ss_pred CCCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCC-----CccccccccCCCCcHHHHHHHHHHHHcCCChHHc
Confidence 45689999999999999999999999999999999999999 9999999999999999999884 465543
Q ss_pred ----------HHHHHHHHHHHHHHhhcCcccc--ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCcccc
Q psy2393 83 ----------EFINNISSNRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLP 150 (576)
Q Consensus 83 ----------~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~ 150 (576)
++++++.+.++++|++||+++| +.+.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|+|+
T Consensus 106 ~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~-~kGliYrg~~~v~wcp~~~T~Ls 184 (862)
T 1gax_A 106 GREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYY-HEGLAYRAPRLVNWCPRCETTLS 184 (862)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHH-TTSSEEEECCEEEEETTTTEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHH-HCCCEEecccccccCCCcCcccc
Confidence 6789999999999999999665 5666999999999999999999 99999999999999999999999
Q ss_pred ccceec-----------------------------------------------------cCCCCCCC-------------
Q psy2393 151 DRYIKG-----------------------------------------------------ECPICNAK------------- 164 (576)
Q Consensus 151 ~~~v~~-----------------------------------------------------~~p~c~~~------------- 164 (576)
++||++ .||.|+..
T Consensus 185 d~EV~~~e~~g~~~~v~f~~~~~~~l~v~TTrPeTl~g~~avav~P~~~ry~~l~G~~~~~P~~~~~ipii~~~~V~~~~ 264 (862)
T 1gax_A 185 DLEVETEPTPGKLYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIPILADPAVEKDF 264 (862)
T ss_dssp GGGEEECCEEEEEEEEECCCSSSCCCEEEESCSGGGTTCCCEEECSSCCTTCSCTTCCCBCTTCCCBCCEEECTTCCTTS
T ss_pred ccccccccccceEEEEEEEecCCCEEEEEeCCccccccceEEEECCCccHHHHHcCCEEECCCCCCeeeEEeccccccCC
Confidence 999862 26666532
Q ss_pred ------------------------------CCCCCccccC--CCcCC------------------------CCccCCCcc
Q psy2393 165 ------------------------------DQYGDFCECC--SSIYT------------------------PTKLINPYS 188 (576)
Q Consensus 165 ------------------------------~~~g~~c~~c--g~~~~------------------------~~~l~~p~~ 188 (576)
+..|..|++| |.+-- +.....|+|
T Consensus 265 GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c 344 (862)
T 1gax_A 265 GTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATC 344 (862)
T ss_dssp SSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEE
T ss_pred CCcceEecCCCCchHHHHHHHcCCCccceeCCCCccccccCCcccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCee
Confidence 1235567777 64311 112346999
Q ss_pred cCCCCccEEeeecceeEecCchhhHHHHHHhhhc--CC-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCC---
Q psy2393 189 ILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIH--DK-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPN--- 262 (576)
Q Consensus 189 ~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~--~~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~--- 262 (576)
||||++++++.++|||+++ +++++.+.++ ++ +. ++|+..++++.+|++ +++|||||||+ +||+|||.
T Consensus 345 ~R~~~~i~~~~~~qWFv~~--~~~~~~~l~~-v~~~~~~~~P~~~~~~~~~wl~---~l~DW~ISRqr-~WG~pIP~w~~ 417 (862)
T 1gax_A 345 SRCGTPIEYAIFPQWWLRM--RPLAEEVLKG-LRRGDIAFVPERWKKVNMDWLE---NVKDWNISRQL-WWGHQIPAWYC 417 (862)
T ss_dssp TTTCSBCCEEECCEEEECH--HHHHHHHHHH-HHHTCCEESSSHHHHHHHHHHH---TCCCCCCBCCC-SSSCCCCCEEE
T ss_pred cCCCCeEEEEecceEEEEh--HHHHHHHHHH-HHcCCceEcCHHHHHHHHHHHh---cccceeEeccc-CCCcccCceec
Confidence 9999999999999999999 9999999999 64 33 578889999999998 89999999999 99999996
Q ss_pred CCCcEEEEEe------e------------------------cccchhhhcchhhhhCCCCCcccc-cccccccccCCCcc
Q psy2393 263 TLEKYFYVWL------D------------------------APIGYLASLKNFFEKGGPKKKYNE-LRNFDEFISSPNTE 311 (576)
Q Consensus 263 ~~~~~~~vw~------d------------------------~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~w~~~~~~ 311 (576)
.++..++||+ + +...+++..+ +++ ..+++.|||.+
T Consensus 418 ~~~~~i~v~~~~~l~~~~~~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~-----------~p~~~~~~~~~~P~d--- 483 (862)
T 1gax_A 418 EDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLG-----------WPEETEDLKAFYPGD--- 483 (862)
T ss_dssp TTTCCEECCCGGGTTCCCCSCTTTCCSCEEECCCCBCHHHHHTSCTTGGGT-----------TTSCCHHHHHSCSBS---
T ss_pred CCCCEEEEeccccccccchhhhhcCchheecCCcccceeeccCCcchhhcc-----------CCCchHHHHhhCCce---
Confidence 2335677776 2 2222222111 121 13456667654
Q ss_pred eEEEeeecCcchhHhHHHHHHH-hcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCC
Q psy2393 312 QYHFIGKDIFYFHILFWPAILK-FSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNN 389 (576)
Q Consensus 312 ~i~~~G~D~~~fh~~~~~a~l~-~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~ 389 (576)
++++|+||++||.....++.. ..|..+++.+++||||++ +|+|||||+||+|+|.+++++ ||+|++|||+++.++
T Consensus 484 -~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~-yGaDalR~~ll~~~~- 560 (862)
T 1gax_A 484 -VLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVER-YGADALRFALIYLAT- 560 (862)
T ss_dssp -CEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHH-HCHHHHHHHHHHHCC-
T ss_pred -EEecCccccccHHHHHHHHHHHhcCCCcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHHH-cChHHHHHHHHhcCC-
Confidence 999999999987654433333 345544489999999997 999999999999999999999 999999999999755
Q ss_pred CCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCC--CcccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy2393 390 KIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLN--MKWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKV 466 (576)
Q Consensus 390 ~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~--~~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~ 466 (576)
...|++||.+.+... ++++++++|++ |.. ..+.++..+ ..... | +|+++.++.+.+.+.++|++|+|+.|
T Consensus 561 ~~~D~~fs~~~l~~~--~~f~nkl~N~~-rf~---~~~~~~~~~~~~~~~~~D-~~il~~l~~~~~~v~~a~e~~~f~~A 633 (862)
T 1gax_A 561 GGQDIRLDLRWLEMA--RNFANKLYNAA-RFV---LLSREGFQAKEDTPTLAD-RFMRSRLSRGVEEITALYEALDLAQA 633 (862)
T ss_dssp TTCCEECCHHHHHHH--HHHHHHHHHHH-HHH---HHHSSSCCCCBCCCCHHH-HHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred CCCCCccCHHHHHHH--HHHHHHHHHHH-HHH---HhcccCCCCccccCCHHH-HHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 458899999988765 55899999996 322 223333211 12222 5 99999999999999999999999999
Q ss_pred HHHHHHHH--HHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 467 LYIVIEQT--NFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 467 ~~~l~~~~--~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
++.|++|+ .++|+|++.+|+|.+.+ .+++..++..+|..+++||+|||||+||+||+.|+.
T Consensus 634 ~~~l~~f~~~~~~n~Yie~~k~~l~~~-------~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~ 696 (862)
T 1gax_A 634 AREVYELVWSEFCDWYLEAAKPALKAG-------NAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALTG 696 (862)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHHTT-------BHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHcchhhhcc-------HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCC
Confidence 99999998 68999999999986532 123456777899999999999999999999999973
No 10
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=1e-80 Score=708.65 Aligned_cols=503 Identities=20% Similarity=0.243 Sum_probs=391.9
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCH-------
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTP------- 81 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~------- 81 (576)
+++++|+|++|||||||.|||||+++++++|+++||+||+| ++|.|++||||||+||+.+|++.|.++
T Consensus 45 ~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G-----~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~ 119 (917)
T 1ffy_A 45 KGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQG-----FYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAE 119 (917)
T ss_dssp TTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTT-----CBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHH
T ss_pred cCCCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCC-----CCCCCcccCchhhHHHHHHHHHcCCCchhCCHHH
Confidence 46789999999999999999999999999999999999999 999999999999999999999999875
Q ss_pred -----HHHHHHHHHHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccce
Q psy2393 82 -----KEFINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYI 154 (576)
Q Consensus 82 -----~~~~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v 154 (576)
.++++++.+.++++|++||+ +||+++.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|+|+++||
T Consensus 120 f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~-~kGliYr~~~~v~wcp~~~T~Lae~eV 198 (917)
T 1ffy_A 120 FREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMA-DKGLIYKGKKPVYWSPSSESSLAEAEI 198 (917)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEETTTTEECCGGGE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHH-HcCCeEecccceeccCCCCcCcchhhh
Confidence 57889999999999999999 5789999999999999999999999 999999999999999999999999999
Q ss_pred ec---cC--------------------------------CC----CCCCC------------------------------
Q psy2393 155 KG---EC--------------------------------PI----CNAKD------------------------------ 165 (576)
Q Consensus 155 ~~---~~--------------------------------p~----c~~~~------------------------------ 165 (576)
++ .| |. |..++
T Consensus 199 ey~d~~~~~~~v~f~~~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~ 278 (917)
T 1ffy_A 199 EYHDKRSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWD 278 (917)
T ss_dssp EEEEEEEEEEECCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCC
T ss_pred hcccccCceEEEEEEecccccccCCCCeEEEEeCCcchhhhceEEEECCCCceEEEEeCCceeehHHHHHHHHHHhcCcc
Confidence 72 11 10 11111
Q ss_pred CCC--CccccCCCcC---------------------------------------------------------------CC
Q psy2393 166 QYG--DFCECCSSIY---------------------------------------------------------------TP 180 (576)
Q Consensus 166 ~~g--~~c~~cg~~~---------------------------------------------------------------~~ 180 (576)
.+. ..|+.||..+ ..
T Consensus 279 ~~~~~~~~~~~G~~l~g~~~~~P~~~~~~pvi~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~ 358 (917)
T 1ffy_A 279 KASIKLEKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEE 358 (917)
T ss_dssp SSCCCCCCCCCTTTCTTCCCBCCTTCCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTT
T ss_pred cceeeeeeeeecccccCCEEECCCCCCeeeEEeccccccCCCCceeEeCCCCCHHHHHHHHHcCCCeeeeECCCceeCCc
Confidence 000 1122222210 00
Q ss_pred -----------------Ccc--------------CCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC-CCCh
Q psy2393 181 -----------------TKL--------------INPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQP 228 (576)
Q Consensus 181 -----------------~~l--------------~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~ 228 (576)
+.| ..|+||||+++++++.++|||+++ +++++.++++ +++. ++|+
T Consensus 359 ~~~~~G~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~--~~lr~~~l~~-i~~~~~~P~ 435 (917)
T 1ffy_A 359 GGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASI--SKVRQDILDA-IENTNFKVN 435 (917)
T ss_dssp CSSCSSSCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECH--HHHHHHHHHH-HHTSEESSH
T ss_pred ccccCCcCHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeH--HHHHHHHHHH-HhcCcccCH
Confidence 001 148999999999999999999999 9999999999 7766 5688
Q ss_pred hHHHHHHHHHhhcCCCCCcccccCCCCCCeecCC---CCCcE------------------EEEEeecccchhhhcchhhh
Q psy2393 229 EIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPN---TLEKY------------------FYVWLDAPIGYLASLKNFFE 287 (576)
Q Consensus 229 ~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~---~~~~~------------------~~vw~d~~~~~~~~~~~~~~ 287 (576)
..++++.+|++ +++|||||||+ +||+|||. .++.+ +++|+++...++...+.-+.
T Consensus 436 ~~~~r~~~~l~---~~~DW~ISRqr-~WG~PIP~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~ 511 (917)
T 1ffy_A 436 WGKTRIYNMVR---DRGEWVISRQR-VWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHP 511 (917)
T ss_dssp HHHHHHHHHHH---HCCCEECEESC-SSSCBCCCEECTTSCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCS
T ss_pred HHHHHHHHHHh---cCccceeeccC-CcCcccceeeCCCCCEecCHHHHHHHHHHhhhcCCcccccCCHHHhcccccccc
Confidence 88999999999 78999999999 99999996 22443 36788776555442111112
Q ss_pred hCCCCCcccccccccccccCCC---------------cceEEEeeecCcc--hhHhHHHHHHHhcCCCCCcEEeeeccEE
Q psy2393 288 KGGPKKKYNELRNFDEFISSPN---------------TEQYHFIGKDIFY--FHILFWPAILKFSGRKLPNNIFVHGFMT 350 (576)
Q Consensus 288 ~~g~~~~~~~~~~~~~~w~~~~---------------~~~i~~~G~D~~~--fh~~~~~a~l~~~~~~~p~~~~~~g~v~ 350 (576)
.+|. ..|.++.+.-+.|.+++ ...++++|+||++ ||..++.++. ..|..+++.+++||||+
T Consensus 512 ~~g~-~~~~~~~D~lD~WfdSg~~~~~~l~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~s~~-~~g~~Pfk~v~~hG~V~ 589 (917)
T 1ffy_A 512 GSPN-GTFTKETDIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSITTSVA-TRGVSPYKFLLSHGFVM 589 (917)
T ss_dssp SCTT-SCCEECCCEECHHHHHHTHHHHTTTTSTTCCSSBSEEEEEGGGGTTHHHHHHHHHHH-HHSSCSBSEEEEECCEE
T ss_pred cCCc-ccccccCCCcCeecCCCCCHHHHcCCchhcCCCceEEEEEecccccHHHHHHHHHHH-hhCCCcccceeEeeeEE
Confidence 2221 12333222222221110 0128999999995 6677666654 34555558999999999
Q ss_pred e-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcC
Q psy2393 351 I-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFK 429 (576)
Q Consensus 351 ~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~ 429 (576)
+ +|+|||||+||+|+|.+++++ ||+|++|||+++. ++..|++||++.+... .+++++++|+++++...+.. ++
T Consensus 590 d~~G~KMSKSlGNvV~P~dvi~~-yGaDalR~~lls~--~~~~D~~fs~~~l~~~--~~~~~kl~n~~r~~l~nl~~-~~ 663 (917)
T 1ffy_A 590 DGEGKKMSKSLGNVIVPDQVVKQ-KGADIARLWVSST--DYLADVRISDEILKQT--SDDYRKIRNTLRFMLGNIND-FN 663 (917)
T ss_dssp CTTSCCCCSSSSCCCCHHHHHHH-TCHHHHHHHHHTS--CTTSCEECCHHHHHHH--HHHHHHHHHHHHHHHHTSTT-CC
T ss_pred cCCCcCcccccCCcCChHHHHHh-CCHHHHHHHHhcc--CCCCCcccCHHHHHHH--HHHHHHHHHHHHHHHhhhhc-cC
Confidence 8 999999999999999999999 9999999999984 5668999999987654 45688899987665433211 11
Q ss_pred ---CCCCC-cccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHhhhhcCccccccCcccHHHHHHH
Q psy2393 430 ---GYLNM-KWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTN--FINIFFDQNKPWKLAKNNIYHEKLHKI 502 (576)
Q Consensus 430 ---~~~~~-~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~--~~n~y~~~~k~~~~~~~~~~~~~~~~v 502 (576)
+.++. .+.. | +|+++.+..+.+.+.++|++|+|+.|++.|++|+. ++|.|++..|+|.+........ .+++
T Consensus 664 ~~~~~v~~~~l~~~D-~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~-r~~~ 741 (917)
T 1ffy_A 664 PDTDSIPESELLEVD-RYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHI-RRSM 741 (917)
T ss_dssp HHHHCCCGGGSCHHH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHHHHHHTTSCTTCHH-HHHH
T ss_pred cccccCCccccCHHH-HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCCcHH-HHHH
Confidence 11221 1222 5 99999999999999999999999999999999996 8999999999988754322222 2234
Q ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 503 SSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 503 ~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
..++..++..+++||+|||||+||+||+.|+.
T Consensus 742 ~~~l~~~l~~l~~lLaP~~P~~aEeiw~~l~~ 773 (917)
T 1ffy_A 742 QTVLYQILVDMTKLLAPILVHTAEEVWSHTPH 773 (917)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHccc
Confidence 45666889999999999999999999999985
No 11
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=3.1e-81 Score=711.62 Aligned_cols=491 Identities=20% Similarity=0.250 Sum_probs=392.3
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc-CCC-------
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA-GMT------- 80 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~-g~~------- 80 (576)
+++++|+|++|||||||.|||||+++++++|+++||+||+| ++|.+++|||+||+||+.+|++. |.+
T Consensus 35 ~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G-----~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~ 109 (821)
T 1ile_A 35 KGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRG-----YYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEA 109 (821)
T ss_dssp TTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTT-----CBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHH
T ss_pred CCCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcC-----CcccccccccCCCchHHHHHHHHhcccccchHhh
Confidence 46789999999999999999999999999999999999999 99999999999999999999985 876
Q ss_pred ---------HHHHHHHHHHHHHHHHhhcC--ccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccc
Q psy2393 81 ---------PKEFINNISSNRKKYLDGFY--IKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFL 149 (576)
Q Consensus 81 ---------~~~~~~~~~~~~~~~l~~lg--i~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l 149 (576)
+.++++++.+.++++|++|| ++||++++|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|+|
T Consensus 110 ~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~-~~Gliy~~~~~v~wcp~~~t~L 188 (821)
T 1ile_A 110 YGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLF-DRGLLYRDHKVVPYCPRCGTPL 188 (821)
T ss_dssp HCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHH-HTTCEEEECCEEEEETTTTEEC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHH-HcCCeeecCcceEecCCCCCcc
Confidence 34678889999999999999 78899999999999999999999999 9999999999999999999999
Q ss_pred cccce-ecc-----------------------------------------------------------------------
Q psy2393 150 PDRYI-KGE----------------------------------------------------------------------- 157 (576)
Q Consensus 150 ~~~~v-~~~----------------------------------------------------------------------- 157 (576)
+++|| +|.
T Consensus 189 ad~ev~~G~~~~~~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~~~~~i~a~~~~~~~ 268 (821)
T 1ile_A 189 SSHEVALGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKL 268 (821)
T ss_dssp CHHHHHHTEEEEEEEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEETTEEEEEETTHHHHH
T ss_pred cHhHhhcCcccccCceEEEEEEecCCcccCCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEcCCcEEEehHHHHHHH
Confidence 99999 320
Q ss_pred ----------------------------------------------------CCCCCCCCC-----CC----CccccCCC
Q psy2393 158 ----------------------------------------------------CPICNAKDQ-----YG----DFCECCSS 176 (576)
Q Consensus 158 ----------------------------------------------------~p~c~~~~~-----~g----~~c~~cg~ 176 (576)
||.|+..|. +| ..|+.||+
T Consensus 269 ~~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~ 348 (821)
T 1ile_A 269 LGEGTQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGK 348 (821)
T ss_dssp TCTTSCEEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEECCTTSCHHHHHHHHHTTCCCCCCBCTTSB
T ss_pred HhhCcEEEEEechHHhcCCEEEcCCcccCCCEEEEEecCcCccCCCCcceEecCCCCHHHHHHHHHcCCCcceeECCCCc
Confidence 111111100 00 12355676
Q ss_pred cCCC---------------Ccc--------------CCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCC-C
Q psy2393 177 IYTP---------------TKL--------------INPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKR-L 226 (576)
Q Consensus 177 ~~~~---------------~~l--------------~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~-~ 226 (576)
+... .+| ..|+|||||++++++.++|||+++ +++++.+.++ +++.. +
T Consensus 349 ~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~--~~~~~~~~~~-~~~~~~~ 425 (821)
T 1ile_A 349 LLVEPFKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKN--TLFKDELIRN-NQEIHWV 425 (821)
T ss_dssp BCSGGGTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECG--GGGHHHHHHH-HHHSEES
T ss_pred CcccCcCCCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEecchhhhch--HHHHHHHHHH-hcCeEEE
Confidence 5541 111 249999999999999999999999 9999999999 77664 5
Q ss_pred ChhH-HHHHHHHHhhcCCCCCcccccCCCCCCeecCC----CCC------------------------------------
Q psy2393 227 QPEI-VNKIKEWLEKDNKFNDWDISRDAPYFGIKIPN----TLE------------------------------------ 265 (576)
Q Consensus 227 ~~~~-~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~----~~~------------------------------------ 265 (576)
|+.. .+++.+|++ +++|||||||+ +||+|||. +++
T Consensus 426 P~~~~~~~~~~~l~---~l~DW~ISRqr-~WG~pIP~~~~~~~~~~~vi~~~~~l~~~~~~~~~~~~~l~~~~~d~~~~~ 501 (821)
T 1ile_A 426 PPHIKEGRYGEWLK---NLVDWALSRNR-YWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELA 501 (821)
T ss_dssp SGGGTTTTTHHHHH---TCCCEECCBCC-SSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEE
T ss_pred CchhhHhHHHHHHh---CCchheecccC-CCCCeeeEEEecCCCcEEeeCcHHHHHhhccccccchhhhccccccccccC
Confidence 6666 358999998 89999999999 99999993 111
Q ss_pred -----------cEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHh
Q psy2393 266 -----------KYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKF 334 (576)
Q Consensus 266 -----------~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~ 334 (576)
.++++|||+...+++..+. ... ....|+.+||.+ +|++|+||++||.....++..+
T Consensus 502 ~~~g~~~~r~~dvld~WfdS~~~~~~~~~~-p~~--------~~~~f~~~~P~d----l~~~G~D~~r~w~~~~~~~~~~ 568 (821)
T 1ile_A 502 CACGGTMRRVPYVIDVWYDSGAMPFASLHY-PFE--------HEEVFRESFPAD----FIAEGIDQTRGWFNSLHQLGVM 568 (821)
T ss_dssp CTTSSEEEECSCBCCHHHHHHHHHHHTTTT-TTS--------CHHHHHHHSSBS----BEEEEGGGGGTHHHHHHHHHHH
T ss_pred CCCCCchhhcccccceecccccchHhhcCC-Ccc--------chHHHhhcCCcc----cccchhhhhccHHHHHHHHHHH
Confidence 3567788876655544321 100 013466678764 9999999998875443333333
Q ss_pred -cCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHH
Q psy2393 335 -SGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGK 412 (576)
Q Consensus 335 -~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~ 412 (576)
.|.++++.+++||||++ +|+|||||+||+|+|.+++++ ||+|++|||+++..+ ...|++||.+.+.... ++++++
T Consensus 569 ~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~-yGaDalR~~ll~~~~-~~~d~~fs~~~l~~~~-~~~~~k 645 (821)
T 1ile_A 569 LFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRK-FGADALRWYIYVSAP-PEADRRFGPNLVRETV-RDYFLT 645 (821)
T ss_dssp HHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTT-TCHHHHHHHHHHHSC-SSSCEECCHHHHHHHH-HHTHHH
T ss_pred hcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHHH-hCHHHHHHHHHhCCC-CCCCcEecHHHHHHHH-HHHHHH
Confidence 35556699999999998 999999999999999999999 999999999999754 4578999999876643 457999
Q ss_pred HHHHHHHHHHHHHHHcCCCCC------CcccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHhhhh
Q psy2393 413 YINIASRSSSFIEKYFKGYLN------MKWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT--NFINIFFDQ 483 (576)
Q Consensus 413 ~~n~~~R~~~~~~~~~~~~~~------~~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~--~~~n~y~~~ 483 (576)
++|+++|+..+.. .++..+ ..+.. | +++++.+..+.+.+.++|++|+|+.|++.|++|+ .++|.|++.
T Consensus 646 l~N~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d-~~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~ 722 (821)
T 1ile_A 646 LWNVYSFFVTYAN--LDRPDLKNPPPPEKRPEMD-RWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRR 722 (821)
T ss_dssp HHHHHHHHHHHHH--HHCCCTTSCCCSTTSCHHH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHH
T ss_pred HHHHHHHHHHhhc--cccCCcccccccccCCHHH-HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987653321 112111 11222 5 8999999999999999999999999999999999 889999999
Q ss_pred cCc--cccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCC
Q psy2393 484 NKP--WKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNIS 535 (576)
Q Consensus 484 ~k~--~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~ 535 (576)
+|+ |...++. .+. ++..++.++|+.+++||+|||||+||+||+.|+..
T Consensus 723 ~k~~~~~~~~~~-~r~---~~~~~l~~~l~~~~~lLaP~~P~~aeelw~~L~~~ 772 (821)
T 1ile_A 723 NRRRFWKNEDAL-DRE---AAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRS 772 (821)
T ss_dssp HHHHHHTCTTTS-STT---HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTT
T ss_pred hhhhcccCCCcH-HHH---HHHHHHHHHHHHHHHHcCCccchHHHHHHHhcccc
Confidence 876 4322211 111 34456678899999999999999999999999853
No 12
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.7e-74 Score=664.16 Aligned_cols=490 Identities=18% Similarity=0.214 Sum_probs=375.3
Q ss_pred CCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc-------------
Q psy2393 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA------------- 77 (576)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~------------- 77 (576)
+++|+|++|||||||.|||||+++++++|+++||+||+| ++|+|++||||||+||+..|++.
T Consensus 33 ~~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G-----~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~ 107 (967)
T 1wz2_A 33 EKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQG-----YNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRD 107 (967)
T ss_dssp GGCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTT-----CCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCC-----CccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHH
Confidence 378999999999999999999999999999999999999 99999999999999999887652
Q ss_pred --C---------CCHHHHHHHHHHHHHHHHhhcCcccc--ccccCCC--hhhHHHHHHHHHHHHhcCCcEEecceeeeec
Q psy2393 78 --G---------MTPKEFINNISSNRKKYLDGFYIKFD--NWYSTDS--IENIDLVQKIYDTLYNKAKLIINKKINQFFD 142 (576)
Q Consensus 78 --g---------~~~~~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~--~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~ 142 (576)
| .+|.++++++.+.++++|++||+++| +.+.|++ +.|.+.++++|.+|+ ++|+||++..+++||
T Consensus 108 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~-~kGliyr~~~~v~wc 186 (967)
T 1wz2_A 108 VYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLK-EKGYIVKGAHRVRWD 186 (967)
T ss_dssp TSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTT-TTTCEEECCCCCEEC
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHH-HCCCEEEeceEeccc
Confidence 3 36888999999999999999999555 8889999 999999999999999 999999999999999
Q ss_pred CCCCccccccceeccC------------------------------------------CCC--------C----------
Q psy2393 143 PIKNIFLPDRYIKGEC------------------------------------------PIC--------N---------- 162 (576)
Q Consensus 143 ~~~~~~l~~~~v~~~~------------------------------------------p~c--------~---------- 162 (576)
|.|+|+|+++||++.. |.| +
T Consensus 187 p~~~T~Lad~Ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~i~TTrPeTl~g~~avav~P~~~Y~~~~~~~~~~~~~~i~a 266 (967)
T 1wz2_A 187 PVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVS 266 (967)
T ss_dssp TTTSCBCCSSSCSSCCCCCEECCEEEEEECCCSSSCCEEEEEESCGGGGGGCCEEEECSSSCEEEEEEECSSCEEEEEEE
T ss_pred CCCCCCcchhhhccCCCceeceeEEEEEEecCCCCceEEEEEcCCchHhhhheEEEECCCCcEEEEEecCCCcceeeehH
Confidence 9999999999875310 111 1
Q ss_pred ------------------------------------CC----------CCCCC---------------------------
Q psy2393 163 ------------------------------------AK----------DQYGD--------------------------- 169 (576)
Q Consensus 163 ------------------------------------~~----------~~~g~--------------------------- 169 (576)
.. ..+|.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~~~~~~~ 346 (967)
T 1wz2_A 267 KEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEIL 346 (967)
T ss_dssp HHHHHHHHHSSCEEEEEEECCSSTTSSCEEECSSSSCEEEEEECSSCCSSSTTSCEEECTTSCTTTTTTTSCCSCCSCCC
T ss_pred HHHHHHHHhhccCcEEEEEEEchhhcCCEEECCCCCCceEEEecccccCCCCcccEEeecCCCHHHHHHHHhhccchhHH
Confidence 00 00000
Q ss_pred -------------------------------ccccC-------------------------CCcC----CC---------
Q psy2393 170 -------------------------------FCECC-------------------------SSIY----TP--------- 180 (576)
Q Consensus 170 -------------------------------~c~~c-------------------------g~~~----~~--------- 180 (576)
.|+.| |.++ ..
T Consensus 347 ~k~~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~~g~~~G~~v~ea~~~ 426 (967)
T 1wz2_A 347 EKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEA 426 (967)
T ss_dssp CTTCCCCCCC----------------CCSSCCTTTSSSCCCSSCTTHHHHTTHHHHHHHHSCBCCSSSSCSSBHHHHTTT
T ss_pred HHcCCchhhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHHHHHHhhhccccCceEeccCcCCcCHHHHHHH
Confidence 01100 1110 00
Q ss_pred --------------CccC-CCcccCCCCccEEe-eecceeEecCchhhHHHHHHhhhcCC-CCChhHHHHHHHHHhhcCC
Q psy2393 181 --------------TKLI-NPYSILSGTKPIIK-SSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKEWLEKDNK 243 (576)
Q Consensus 181 --------------~~l~-~p~~~~~~~~~~~~-~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~ 243 (576)
.++. .|+|||||++++.+ .++|||+++++..+++.+.++ +++. ++|+..++.+.+|++ +
T Consensus 427 i~~~L~~~g~l~~~~~~~~~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k~~~l~~-~~~~~~~P~~~~~~~~~~l~---~ 502 (967)
T 1wz2_A 427 IAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKA-LERMKILPETRRAQFEAIID---W 502 (967)
T ss_dssp THHHHHHHTSEEECCEESSSCCBCSSSSBCEECCCSSCEEEESCCTTHHHHHHHH-HTTSCEESSTTHHHHHHHHH---S
T ss_pred HHHHHHhCCCceEEEecCCCceECCCCCEEEEeccCCccceecCchHHHHHHHHh-hhccEeeCccccchHHHhhh---c
Confidence 0011 48999999999999 699999999433699999999 7765 568888999999998 8
Q ss_pred CCCcccccCCCCCCeecCCCCC--------cEEEEEeecccchhhhcc----------------hh-------------h
Q psy2393 244 FNDWDISRDAPYFGIKIPNTLE--------KYFYVWLDAPIGYLASLK----------------NF-------------F 286 (576)
Q Consensus 244 ~~dw~isR~~~~WG~~iP~~~~--------~~~~vw~d~~~~~~~~~~----------------~~-------------~ 286 (576)
++|||||||+ +||+|+|.++. .++|+|+++..+++.... .+ .
T Consensus 503 l~DW~ISRqr-~WG~piP~d~~~~~~~~~ds~iYv~~~~~~~~~~~~~~~~g~~~~~l~~~~~d~~~~~~~~~g~~~~~~ 581 (967)
T 1wz2_A 503 LDKKACARKI-GLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELE 581 (967)
T ss_dssp CCEECCCBSS-SSSEECTTCTTSEECHHHHTTSTHHHHHHHHHHHHHHHTTCCCGGGCCHHHHHHTTTSCCCHHHHHHHH
T ss_pred ccCeeeccCC-CCCccCCcCcccccccCCCCceEeehhhhhhHHHHHHHhcCCChHHcCcccceeeccCccccCccccch
Confidence 9999999999 99999997543 345666654433332100 00 0
Q ss_pred hhCCCCCc-ccc-cccccccccCCCcceEEEeeecCcchhHhHHHHHHHhc-CC-CCCcEEeeeccEEeCCccccccCCC
Q psy2393 287 EKGGPKKK-YNE-LRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFS-GR-KLPNNIFVHGFMTINGKKMSKSNKI 362 (576)
Q Consensus 287 ~~~g~~~~-~~~-~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~-~~-~~p~~~~~~g~v~~~g~KMSKS~gn 362 (576)
...|.+.. ..+ ..+++.|||.+ +|++|+||++||+.++.++..++ +. +.|+.+++||||+++|+|||||+||
T Consensus 582 ~~sG~~~~~~~~~~~~~~~w~P~D----i~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GN 657 (967)
T 1wz2_A 582 KKTGIPAEIIHEMKEEFEYWYPLD----WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGN 657 (967)
T ss_dssp HHHTCCHHHHHHHHHHHHHHCSCS----EEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCC
T ss_pred hhcCCCHHHHhhhHHHHHhhCCCe----EEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCEEccccccC
Confidence 01110000 000 02345556654 99999999999999986554443 33 4579999999999999999999999
Q ss_pred ccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCccc-CChH
Q psy2393 363 GISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNMKWV-KDND 441 (576)
Q Consensus 363 ~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~-~d~~ 441 (576)
+|+|.+++++ ||+|++|||+++.++ ...|++|+.+.+... .+++++++|++.++.. . ....+.... .| +
T Consensus 658 vv~p~d~i~~-yGaDalR~~ll~~~~-~~~d~~fs~~~~~~~--~~~l~rl~n~~~~~~~----~-~~~~~~~~~~~D-~ 727 (967)
T 1wz2_A 658 VLNFIDAIEE-NGADVVRLYIMSLAE-HDSDFDWRRKEVGKL--RKQIERFYELISQFAE----Y-EVKGNVELKDID-R 727 (967)
T ss_dssp CCBHHHHHHT-TCHHHHHHHHHHHCC-TTCCEEECHHHHHHH--HHHHHHHHHHHHHHHS----S-CCCCCCCCCHHH-H
T ss_pred CCCHHHHHHH-hChHHHHHHHHhCCC-CCCCcccCHHHHHHH--HHHHHHHHHHHHHHhc----C-CCCCcccCCHHH-H
Confidence 9999999999 999999999987644 568899999876554 4567777777654421 1 100111222 25 9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhcccc
Q psy2393 442 TFLSKLRVVSSSIQKYYENRNFNKVLYIV-IEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPI 520 (576)
Q Consensus 442 ~l~~~l~~~~~~v~~a~~~~~~~~~~~~l-~~~~~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi 520 (576)
|+++.+..+.+.+.++|++|+|+.|+..+ +.+++.+|+|++.+++. . . . .+..++.++|+.+++||+||
T Consensus 728 ~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~~~n~Yi~~~k~~----~--~-~---~~~~~l~~~l~~l~~LLaP~ 797 (967)
T 1wz2_A 728 WMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGR----D--D-E---AKRYVLRTLADVWVRLMAPF 797 (967)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTTC----C--C-H---HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhccch----h--H-H---HHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999876 57778999999988742 1 1 1 33457778999999999999
Q ss_pred ccHHHHHHHHHcCCC
Q psy2393 521 LPNLAKSVETFLNIS 535 (576)
Q Consensus 521 ~P~~ae~i~~~L~~~ 535 (576)
|||+||+||+.||.+
T Consensus 798 ~P~~aEeiw~~L~~~ 812 (967)
T 1wz2_A 798 TPHICEELWEKLGGE 812 (967)
T ss_dssp SHHHHHHHHHHSSCC
T ss_pred cchHHHHHHHhcCCC
Confidence 999999999999853
No 13
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.2e-74 Score=654.16 Aligned_cols=488 Identities=17% Similarity=0.212 Sum_probs=376.4
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc-----------
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA----------- 77 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~----------- 77 (576)
+++++|+|++|||||||+|||||+++++++|+++||+||+| ++|.+++|||+||+||+..|++.
T Consensus 31 ~~~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G-----~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~ 105 (810)
T 1wkb_A 31 PKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQG-----YNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIY 105 (810)
T ss_dssp CGGGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHT-----CEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCC-----CccCcCCccCCCCChHHHHHHHhcccCchHHHHH
Confidence 34679999999999999999999999999999999999999 99999999999999999887642
Q ss_pred -------------CCCHHHHHHHHHHHHHHHHhhcCcccc--ccccCCC--hhhHHHHHHHHHHHHhcCCcEEecceeee
Q psy2393 78 -------------GMTPKEFINNISSNRKKYLDGFYIKFD--NWYSTDS--IENIDLVQKIYDTLYNKAKLIINKKINQF 140 (576)
Q Consensus 78 -------------g~~~~~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~--~~~~~~v~~~~~~L~~~~g~iy~~~~~~~ 140 (576)
+.+|.++++++.+.++++|++|||++| +.+.|++ +.|.+.++++|.+|+ ++|+||++..+++
T Consensus 106 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~-~~Gliy~~~~~v~ 184 (810)
T 1wkb_A 106 RDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLK-EKGYIVKGAHRVR 184 (810)
T ss_dssp HHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHH-HTTCEEEEEEEEE
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHH-HCCCEEECCeeee
Confidence 247888999999999999999999776 7888999 999999999999999 9999999999999
Q ss_pred ecCCCCccccccceeccC------------------------------------------CCC--------C--------
Q psy2393 141 FDPIKNIFLPDRYIKGEC------------------------------------------PIC--------N-------- 162 (576)
Q Consensus 141 ~~~~~~~~l~~~~v~~~~------------------------------------------p~c--------~-------- 162 (576)
|||.|+|+|++++|++.+ |.| +
T Consensus 185 ~~~~~~t~La~~ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~P~~~y~~~~~~~~~~~~~~i 264 (810)
T 1wkb_A 185 WDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWI 264 (810)
T ss_dssp EETTTTEECCTTCCSBCSSCCEEEEEEEEEECCSSCSCCEEEEEESCGGGGGGCCEEEECTTSCEEEEEEEETTEEEEEE
T ss_pred ccCCcCCCccHHHHhcCCCCccceeEEEEEEccCCCCceEEEEEcCCchHhhhhhEEEECCCCcEEEEEecCCCcceeee
Confidence 999999999999885410 111 1
Q ss_pred --------------------------------------CC----------CCCC-------------------------C
Q psy2393 163 --------------------------------------AK----------DQYG-------------------------D 169 (576)
Q Consensus 163 --------------------------------------~~----------~~~g-------------------------~ 169 (576)
.. ..+| +
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~~~~~ 344 (810)
T 1wkb_A 265 VSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETE 344 (810)
T ss_dssp EEHHHHHHHTTSSCEEEEEEECTTTTTTTCEEECSSSCCEEEEEECTTSCTTSTTSCEEECTTTCHHHHHHHCCCSCCSC
T ss_pred eHHHHHHHHHhhhcceEEEEEEEchhhcCCEEECCCCCCeeEEEecCcccCCCCceeEEeCCCCCHHHHHHHHhhccchh
Confidence 00 0000 1
Q ss_pred ccccCCCc---------C--------------------------C----------------------CC-----------
Q psy2393 170 FCECCSSI---------Y--------------------------T----------------------PT----------- 181 (576)
Q Consensus 170 ~c~~cg~~---------~--------------------------~----------------------~~----------- 181 (576)
+|..||-. + + ..
T Consensus 345 ~~~k~~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~G~~~~g~~~G~~v~~a~ 424 (810)
T 1wkb_A 345 ILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVK 424 (810)
T ss_dssp CCTTCSCCCCCC----------------CCTTCCSGGGTSCCCTTCSCTHHHHHHHHHHHHHSCEECSGGGTTEEHHHHH
T ss_pred HHHHcCCChhhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhhhhhhhhhccccCceEeccCcCCeEHHHhH
Confidence 12233311 0 0 00
Q ss_pred -----cc-------------CCCcccCCCCccEEe-eecceeEecCchhhHHHHHHhhhcCC-CCChhHHHHHHHHHhhc
Q psy2393 182 -----KL-------------INPYSILSGTKPIIK-SSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKEWLEKD 241 (576)
Q Consensus 182 -----~l-------------~~p~~~~~~~~~~~~-~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~ 241 (576)
+| ..|+|||||++++.+ .++|||+++++..+++.+.++ +++. ++|+..++++.+|++
T Consensus 425 ~~i~~~L~~~g~~~~~~~~~~~~~~~r~g~~vi~~~~~~qwF~~~~~~~~~~~~l~~-~~~~~~~P~~~~~~~~~~l~-- 501 (810)
T 1wkb_A 425 EAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKA-LERMKILPETRRAQFEAIID-- 501 (810)
T ss_dssp HHHHHHHHTTTSEEEEEEESSSCCBCTTSCBCEEEEEEEEEEECTTCHHHHHHHHHH-HHTSEEESGGGHHHHHHHHH--
T ss_pred HHHHHHHHhCCCeeeEEecCCCCcCCCCCCEEEEEecCCceeEecChHHHHHHHHhh-hcccEEECcchhchHHHHhh--
Confidence 00 038999999999998 799999999322599999999 7766 568888999999998
Q ss_pred CCCCCcccccCCCCCCeecCCCC--------CcEEEEEeecccchhhhcc----------------hh------------
Q psy2393 242 NKFNDWDISRDAPYFGIKIPNTL--------EKYFYVWLDAPIGYLASLK----------------NF------------ 285 (576)
Q Consensus 242 ~~~~dw~isR~~~~WG~~iP~~~--------~~~~~vw~d~~~~~~~~~~----------------~~------------ 285 (576)
+++|||||||+ +||+|+|.++ +.++|+|+++..+++.... .+
T Consensus 502 -~l~Dw~ISRq~-~WG~piP~d~~~~~~~~~~~~iYv~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~g~~~~ 579 (810)
T 1wkb_A 502 -WLDKKACARKI-GLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKE 579 (810)
T ss_dssp -HCCCEECEESS-SBSCEETTEEEEEECTTTSSSSHHHHHHHHHHHHHHHHTTCCCGGGCCHHHHHHHHHSCCCHHHHHH
T ss_pred -cccCccccccC-CCCCcCCcCcceecccCCCCceeeehhhhHHHHHHhHhhcCCCHHHcCccceeeeeccccccCcccc
Confidence 89999999999 9999999532 4567778776555543100 00
Q ss_pred -hhhCCCCCc-ccc-cccccccccCCCcceEEEeeecCcchhHhHHHHHHHh-cCC-CCCcEEeeeccEEeCCccccccC
Q psy2393 286 -FEKGGPKKK-YNE-LRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKF-SGR-KLPNNIFVHGFMTINGKKMSKSN 360 (576)
Q Consensus 286 -~~~~g~~~~-~~~-~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~-~~~-~~p~~~~~~g~v~~~g~KMSKS~ 360 (576)
....|.+.. ..+ ..+++.|||.+ +|++|+||++||+.++.++..+ .+. +.|+++++||||+++|+|||||+
T Consensus 580 ~~~~sg~~~~~~~~~~~~~~~~~p~D----i~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~ 655 (810)
T 1wkb_A 580 LEKKTGIPAEIIHEMKEEFEYWYPLD----WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSK 655 (810)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHCSCS----EEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTT
T ss_pred chhhhCCCHHHHHhhHHHHHhhCCce----EEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEeCCeehhhcC
Confidence 001111000 000 02345556654 9999999999999998654444 232 46799999999999999999999
Q ss_pred CCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCC--Cccc-
Q psy2393 361 KIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLN--MKWV- 437 (576)
Q Consensus 361 gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~--~~~~- 437 (576)
||+|+|.+++++ ||+|++|||+++.++ ...|++||.+.+... .+++++++|++.++. ....+ ....
T Consensus 656 GNvv~p~dli~~-yGaDalR~~ll~~~~-~~~d~~fs~~~~~~~--~~~l~rl~n~~~~~~-------~~~~~~~~~~~~ 724 (810)
T 1wkb_A 656 GNVLNFIDAIEE-NGADVVRLYIMSLAE-HDSDFDWRRKEVGKL--RKQIERFYELISQFA-------EYEVKGNVELKD 724 (810)
T ss_dssp TCCCBHHHHHHH-HCHHHHHHHHHHHCC-TTCCEEECHHHHHHH--HHHHHHHHHHHHHHH-------TCCCCSCCCCCH
T ss_pred CCcCCHHHHHHH-cChHHHHHHHHhcCC-CCCCcccCHHHHHHH--HHHHHHHHHHHHHHH-------hccCcccccCCH
Confidence 999999999999 999999999986544 568899999876443 445666666654432 11111 1122
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHh
Q psy2393 438 KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIV-IEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIY 516 (576)
Q Consensus 438 ~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l-~~~~~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~l 516 (576)
.| +++++.+..+.+.+.++|++|+|+.|+..+ +.+++.+|+|++.+++. + . . ++..++.++++.+++|
T Consensus 725 ~d-~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~~~~n~yi~~~k~~----~--~--~--~~~~~l~~~l~~l~~l 793 (810)
T 1wkb_A 725 ID-RWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGR----D--D--E--AKRYVLRTLADVWVRL 793 (810)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTTC----C--C--H--HHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcCc----c--h--h--HHHHHHHHHHHHHHHH
Confidence 25 899999999999999999999999999865 68889999999988741 1 1 1 1246777899999999
Q ss_pred ccccccHHHHHHHHHcC
Q psy2393 517 LKPILPNLAKSVETFLN 533 (576)
Q Consensus 517 l~Pi~P~~ae~i~~~L~ 533 (576)
|+|||||+||+||+.||
T Consensus 794 LaP~~P~~aEelw~~Lg 810 (810)
T 1wkb_A 794 MAPFTPHICEELWEKLG 810 (810)
T ss_dssp HTTTSHHHHHHHHHHCC
T ss_pred HhhhhhHHHHHHHHhcC
Confidence 99999999999999987
No 14
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=3.4e-71 Score=622.36 Aligned_cols=457 Identities=19% Similarity=0.272 Sum_probs=332.2
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHH
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~ 88 (576)
.++++|+|+++||||||+|||||+++++++|+++||+||+| ++|.+++|||+||+||+.+|.+.|.+|.++++++
T Consensus 50 ~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G-----~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~ 124 (880)
T 4arc_A 50 ESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLG-----KNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDN 124 (880)
T ss_dssp TTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTT-----CEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcC-----CceEEecCccccCcHHHHHHHHcCCCHHHHHHHH
Confidence 35679999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCcccc--ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCC
Q psy2393 89 SSNRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQ 166 (576)
Q Consensus 89 ~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~ 166 (576)
.+.|+++|++||+++| ++++|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|+|++.+
T Consensus 125 i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~-ekGliY~~~~~v~wcp~~~t~La~~e------------- 190 (880)
T 4arc_A 125 IAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELY-KKGLVYKKTSAVNWCPNDQTVLANEQ------------- 190 (880)
T ss_dssp HHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHH-HTTCEEEEEECC---------------------------
T ss_pred HHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHH-HCCCEEEeceeEeecCCcCCEecchh-------------
Confidence 9999999999999776 8999999999999999999999 99999999999999999999888654
Q ss_pred CCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC-CCChhHHHHHHHHHhh-----
Q psy2393 167 YGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKEWLEK----- 240 (576)
Q Consensus 167 ~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~----- 240 (576)
+++++|++||.+|+.+..+||||++ +++++.++++ ++.. .||+.++...++|+.+
T Consensus 191 ----------------v~~g~~~~~g~~ve~~~~~~~f~~i--~~y~~~Ll~~-l~~~~~wp~~v~~~~~~wig~s~g~~ 251 (880)
T 4arc_A 191 ----------------VIDGCCWRCDTKVERKEIPQWFIKI--TAYADELLND-LDKLDHWPDTVKTMQRNWIGRSEGVE 251 (880)
T ss_dssp --------------------------------CEEEEEECG--GGGHHHHHHH-GGGCTTSCHHHHHHHHHHHCEEEEEE
T ss_pred ----------------hhcCcCcCCCCccEEEEccceEEee--chhHHHHHHH-HhhcccccHHHHHHHHhhhccccceE
Confidence 4567788999999999999999999 9999999888 5443 5666666555555531
Q ss_pred --------------------------------------------------------------------------------
Q psy2393 241 -------------------------------------------------------------------------------- 240 (576)
Q Consensus 241 -------------------------------------------------------------------------------- 240 (576)
T Consensus 252 v~f~~~~~~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 331 (880)
T 4arc_A 252 ITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVH 331 (880)
T ss_dssp EEEEETTCSSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGCHHHHHHHTC----------------CEEEEEEEEEC
T ss_pred EEEEecCCCceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcChHHHHHHHHHHhccCchhhhhccceeeccccCcEEec
Confidence
Q ss_pred -------------------------------------------------c------------------------------
Q psy2393 241 -------------------------------------------------D------------------------------ 241 (576)
Q Consensus 241 -------------------------------------------------~------------------------------ 241 (576)
.
T Consensus 332 P~~~~~ipi~~~~yV~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~ 411 (880)
T 4arc_A 332 PLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLD 411 (880)
T ss_dssp TTTCCEEEEEEETTSCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCCBCSSGGGTTCC
T ss_pred CCCCCEeEEEEeCccccCCCCceEEEccCCCHHHHHHHHHcCCCceEeeccCcccccccccccccCCceeecCcccCCCC
Confidence 1
Q ss_pred -----------------------CCCCCcccccCCCCCCeecCC----CCC-----------------------------
Q psy2393 242 -----------------------NKFNDWDISRDAPYFGIKIPN----TLE----------------------------- 265 (576)
Q Consensus 242 -----------------------~~~~dw~isR~~~~WG~~iP~----~~~----------------------------- 265 (576)
.+++|||||||| |||+|||. +++
T Consensus 412 ~~eA~~~ii~~L~~~g~~~~~v~yrlrDW~iSRQR-yWG~PIPi~~c~~cg~v~v~~~~Lpv~lp~~~~~~~~g~pl~~~ 490 (880)
T 4arc_A 412 HEAAFNAIADKLTAMGVGERKVNYRLRDWGVSRQR-YWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKAD 490 (880)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEESCCCEECEESC-SSSCBCCEEEETTSCEEECCGGGCSCCCCSSCCCCSSSCHHHHS
T ss_pred HHHHHHHHHHHHHHcCCcceeEEEEcccceeeeee-ccCCcceEEEECCCCeEeCChHHCccccchhcccCCCCCchHhC
Confidence 026799999999 99999994 111
Q ss_pred -----------------cEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchh---H
Q psy2393 266 -----------------KYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFH---I 325 (576)
Q Consensus 266 -----------------~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh---~ 325 (576)
.++++|||+. +|.+.... ..... ..-+.+.++.|+|-+ ++++|.||+..| +
T Consensus 491 ~~w~~~~cpg~~~~retDtmDtw~dSs-wy~~r~~~-p~~~~---~~~~~~~~~~~~PvD----~yigG~EHailHllya 561 (880)
T 4arc_A 491 PEWAKTTVNGMPALRETDTFDTFMESS-WYYARYTC-PQYKE---GMLDSEAANYWLPVD----IYIGGIEHAIMHLLYF 561 (880)
T ss_dssp TTTTEEESSSSEEEECCCEECTTTGGG-THHHHTTS-TTCCS---SSCCHHHHHHHCSEE----EEECCGGGTTTHHHHH
T ss_pred ccceeeccCCCcceeCCCcCCCcccCc-HHHHhhcC-CCccc---cccChHHHhccCCce----EeecchhhHHHHHHHH
Confidence 1234455543 23322110 00000 000001222233433 899999997666 5
Q ss_pred hHHHHHHHhcCC---CCC-cEEeeeccEE-------e-CCc------------------------------------ccc
Q psy2393 326 LFWPAILKFSGR---KLP-NNIFVHGFMT-------I-NGK------------------------------------KMS 357 (576)
Q Consensus 326 ~~~~a~l~~~~~---~~p-~~~~~~g~v~-------~-~g~------------------------------------KMS 357 (576)
.+|..+|..+|. ..| +.+++||||+ . +|+ |||
T Consensus 562 Rf~~~~L~~~g~~~~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMS 641 (880)
T 4arc_A 562 RFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMS 641 (880)
T ss_dssp HHHHHHHHHTTSCCCSCSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECC
T ss_pred HHHHHHHHHhhcccCCCChHHeEEeceEeecceeccccCCcccccCHHHhccccccccccccccccCCcccccccccccc
Confidence 677777777664 456 8999999996 3 566 999
Q ss_pred ccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCC-Ccc
Q psy2393 358 KSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLN-MKW 436 (576)
Q Consensus 358 KS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~-~~~ 436 (576)
||+||+|+|.+++++ ||+|++|||+++.++ ..+|++||.+.+... ..++++++|++.+... .......+ ..+
T Consensus 642 KSkGNvVdP~diIek-YGADalRl~ll~~~~-~~~dl~~s~~~ie~a--~rfl~rlwn~~~~~~~---~~~~~~~~~~~l 714 (880)
T 4arc_A 642 KSKNNGIDPQVMVER-YGADTVRLFMMFASP-ADMTLEWQESGVEGA--NRFLKRVWKLVYEHTA---KGDVAALNVDAL 714 (880)
T ss_dssp TTTTCCCCHHHHHHH-HCHHHHHHHHHHSSC-TTSCEECCHHHHHHH--HHHHHHHHHHHHHHHH---TCCCCCCCSTTC
T ss_pred CcCCCCCCHHHHHHH-cCchHHHHHHHhcCC-CCCCcccCHHHHHHH--HHHHHHHHHHHHHHHh---cccccccccccC
Confidence 999999999999999 999999999999754 458899999987655 3467777777644321 10000111 122
Q ss_pred cCChHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHH
Q psy2393 437 VKDNDTFLSKLRVVSSSIQKYYE-NRNFNKVLYIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTI 515 (576)
Q Consensus 437 ~~d~~~l~~~l~~~~~~v~~a~~-~~~~~~~~~~l~~~~~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ 515 (576)
...++|+++.++++.+.+.++|+ +|+|+.|++.|++|++.+++|. .+ .. .. ..++.+++..+++
T Consensus 715 ~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efvn~l~k~~---------~~--~~-~~---~~~l~~~l~~ll~ 779 (880)
T 4arc_A 715 TENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAP---------TD--GE-QD---RALMQEALLAVVR 779 (880)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSC---------CS--SH-HH---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHhhh---------cc--ch-HH---HHHHHHHHHHHHH
Confidence 22239999999999999999998 8999999999999998777652 11 11 12 2456678999999
Q ss_pred hccccccHHHHHHHHHcCCC
Q psy2393 516 YLKPILPNLAKSVETFLNIS 535 (576)
Q Consensus 516 ll~Pi~P~~ae~i~~~L~~~ 535 (576)
||+||+||+|||||+.||.+
T Consensus 780 LLaPf~PhiaEElW~~Lg~~ 799 (880)
T 4arc_A 780 MLNPFTPHICFTLWQELKGE 799 (880)
T ss_dssp HHTTTSHHHHHHHHHHTTCS
T ss_pred HHhhccHHHHHHHHHHcCCC
Confidence 99999999999999999875
No 15
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=1.3e-69 Score=614.96 Aligned_cols=458 Identities=19% Similarity=0.249 Sum_probs=350.0
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHH
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~ 88 (576)
+++++++|+++||||||.|||||+|+++++|+++||+||+| ++|.+++|||+||+||+.+|++.|.+|.++++++
T Consensus 30 ~~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G-----~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~ 104 (878)
T 2v0c_A 30 GGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQG-----YEVLHPMGWDAFGLPAENAALKFGVHPKDWTYAN 104 (878)
T ss_dssp C---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHT-----CEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcC-----CceEeecccCcccHHHHHHHHHcCCCHHHHHHHH
Confidence 35678999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCcccc--ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCC
Q psy2393 89 SSNRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQ 166 (576)
Q Consensus 89 ~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~ 166 (576)
.+.|+++|++||+++| ++++|+++.|.+.++++|.+|+ ++|++|++..+++|||.|+|+|++++|+
T Consensus 105 ~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~-~kGliY~~~~~v~w~p~~~t~La~~ev~----------- 172 (878)
T 2v0c_A 105 IRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMW-EKGLAYRAKGLVNWCPKCQTVLANEQVV----------- 172 (878)
T ss_dssp HHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEETTTTEEECGGGEE-----------
T ss_pred HHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHH-HCCCEEEcceeEEEeCCCCCCcCHHHHh-----------
Confidence 9999999999999776 8999999999999999999999 9999999999999999999999988774
Q ss_pred CCCccccCCCcCCCCccCCCcccC-CCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHh------
Q psy2393 167 YGDFCECCSSIYTPTKLINPYSIL-SGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLE------ 239 (576)
Q Consensus 167 ~g~~c~~cg~~~~~~~l~~p~~~~-~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~------ 239 (576)
++.|++ ||++++.+..+||||++ +++++.|.++ ++...||+.+++...+|+.
T Consensus 173 ------------------~g~~~~~~~~~~~~~~~~~~f~~l--~~~~~~L~~~-l~~~~~p~~~~~~~~~wi~~s~g~~ 231 (878)
T 2v0c_A 173 ------------------EGRCWRHEDTPVEKRELEQWYLRI--TAYAERLLKD-LEGLNWPEKVKAMQRAWIGRSEGAE 231 (878)
T ss_dssp ------------------TTEESSCTTCBCEEEEEEEEEECG--GGGHHHHHHT-TTTCBSCHHHHHHHHHHHCEEEEEE
T ss_pred ------------------cCCCcccCCCceEEEecceeeEec--chhHHHHHHH-hhhcCCCHHHHHHHHHHhccccCce
Confidence 345667 88899999999999999 9999888877 5443344444433333331
Q ss_pred --------------------------------------------------------------------------------
Q psy2393 240 -------------------------------------------------------------------------------- 239 (576)
Q Consensus 240 -------------------------------------------------------------------------------- 239 (576)
T Consensus 232 v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~ 311 (878)
T 2v0c_A 232 ILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYA 311 (878)
T ss_dssp EEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCGGGHHHHHHHHHHHHTSCHHHHHCSSSCCCCEEEEEEE
T ss_pred EEEEecCCCceEEEEeCCchhhhCcEEEEEcCCCeeeehhccchhHHHHHHHHHHHhhhhhhhhhhccceeeeEecCcEE
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy2393 240 -------------------------------------------------------------------------------- 239 (576)
Q Consensus 240 -------------------------------------------------------------------------------- 239 (576)
T Consensus 312 ~~P~~~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~G 391 (878)
T 2v0c_A 312 LNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDG 391 (878)
T ss_dssp ECTTTCCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSSCCCSSCSSCCCSCCEECSSGGGTT
T ss_pred ECCCCCCEeEEEEeCcccCCCCCceEEeCCCCCHHHHHHHHHcCCCceeeeCCCCccccccccccccCCeeEecCCCCCC
Confidence
Q ss_pred ---------------hc--------CCCCCcccccCCCCCCeecCCC---CCcEEE-------EEeecccch--------
Q psy2393 240 ---------------KD--------NKFNDWDISRDAPYFGIKIPNT---LEKYFY-------VWLDAPIGY-------- 278 (576)
Q Consensus 240 ---------------~~--------~~~~dw~isR~~~~WG~~iP~~---~~~~~~-------vw~d~~~~~-------- 278 (576)
+. .+++|||||||| +||+|||.. .+..+. +++.....+
T Consensus 392 l~~~eA~~~Ii~~L~~~g~~~~~v~~rlrDW~ISRQR-~WG~PIPi~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~ 470 (878)
T 2v0c_A 392 TESEEGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQR-YWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGK 470 (878)
T ss_dssp CBHHHHHHHHHHHHHHHTSEEEEEEESCCCEECEESC-SSSEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSS
T ss_pred cCHHHHHHHHHHHHHHCCCCCCceEEecccchhhccc-ccCCcccEEEECCCCeEecCHHHccccccchhhhhccccCCC
Confidence 00 046799999999 999999961 111111 111100001
Q ss_pred --hhhcchh----hhhCCCCCccccc-----------------------------ccccccccCCCcceEEEeeecCcch
Q psy2393 279 --LASLKNF----FEKGGPKKKYNEL-----------------------------RNFDEFISSPNTEQYHFIGKDIFYF 323 (576)
Q Consensus 279 --~~~~~~~----~~~~g~~~~~~~~-----------------------------~~~~~~w~~~~~~~i~~~G~D~~~f 323 (576)
+.....+ |..+|. .+.++ ++++.|||.+ ++++|.||...
T Consensus 471 ~pl~~~~~~~~~~cp~cg~--~~~retDtmDtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~~P~D----~yi~G~d~~il 544 (878)
T 2v0c_A 471 SPLEAHPEFYETTCPKCGG--PAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVD----QYIGGVEHAVL 544 (878)
T ss_dssp CGGGGCHHHHEEECTTTCS--EEEECCCEECHHHHHTSHHHHTTSTTCSSSSCCHHHHHHHCSBS----EEECCGGGTTT
T ss_pred ChhhhhHhhcCCcCCCCCC--cceeccccccccccccchhhhccCccccccccCHHHHccCCCCe----EEEechHHHHH
Confidence 0000001 111221 11111 1222233443 89999999644
Q ss_pred h---HhHHHHHHHhcCC---CCC-cEEeeeccEEe---------------------------------------------
Q psy2393 324 H---ILFWPAILKFSGR---KLP-NNIFVHGFMTI--------------------------------------------- 351 (576)
Q Consensus 324 h---~~~~~a~l~~~~~---~~p-~~~~~~g~v~~--------------------------------------------- 351 (576)
| +.+|..+|..+|+ +.| +.+++||||+.
T Consensus 545 hl~y~r~~~~~l~~~g~~~~~~Pfk~l~~~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (878)
T 2v0c_A 545 HLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRP 624 (878)
T ss_dssp HHHHHHHHHHHHHHTTSCSCSCSBSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhhcccCCCchHhheecceEeccceeccccccccceeccccccccccccCchhhhhccccccceeec
Confidence 4 5567777776663 455 89999999987
Q ss_pred --CC-------ccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHH
Q psy2393 352 --NG-------KKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSS 422 (576)
Q Consensus 352 --~g-------~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~ 422 (576)
+| +|||||+||+|+|.+++++ ||+|++|||+++.++. ..|++||.+.+... .+++++++|++.....
T Consensus 625 ~~~G~~~~~~~~KMSKSkGNvVdP~diI~~-yGADalRl~ll~~~~~-~~D~~fs~~~v~~~--~~~l~Rl~n~~~~~~~ 700 (878)
T 2v0c_A 625 HEDGTLHLWKPAVMSKSKGNGVMVGPFVKE-QGADIARITILFAAPP-ENEMVWTEEGVQGA--WRFLNRIYRRVAEDRE 700 (878)
T ss_dssp CTTSSEEEEEEEECSGGGTCCCBHHHHHHH-SCHHHHHHHHHHHSCT-TSCEEECHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred cCCCCchhhhHHHhhccCCCcccHHHHHHH-cCccHHHHHHhccCCC-CCCceeCHHHHHHH--HHHHHHHHHHHHHHHh
Confidence 88 8999999999999999999 9999999999996554 48899999987554 4467777776543322
Q ss_pred HHHHHcCCCCCC-cccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcCccccccCcccHHHHH
Q psy2393 423 FIEKYFKGYLNM-KWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLH 500 (576)
Q Consensus 423 ~~~~~~~~~~~~-~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k~~~~~~~~~~~~~~~ 500 (576)
-+.. ....++. .+.. | +|+++.+..+.+.+.++|++|+|+.|++.|++|++.+|+|.+.. . . +
T Consensus 701 ~~~~-~~~~~~~~~l~~~D-~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~~~l~k~~~~~-------~--~----~ 765 (878)
T 2v0c_A 701 ALLE-TSGVFQAEALEGKD-RELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDR-------P--V----T 765 (878)
T ss_dssp HHHT-CCCCCCGGGCCHHH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC-------C--S----C
T ss_pred cccc-cccccCcccCCHHH-HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhhhcccc-------h--h----H
Confidence 1100 0011111 2222 5 99999999999999999999999999999999999899886431 1 0 1
Q ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHHHHcC
Q psy2393 501 KISSRLLEAFRILTIYLKPILPNLAKSVETFLN 533 (576)
Q Consensus 501 ~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~ 533 (576)
.++.++|+.+++||+|||||+||+||+.||
T Consensus 766 ---~~l~~~l~~l~~LLaPf~P~~aEElw~~Lg 795 (878)
T 2v0c_A 766 ---PVYRTAIRYYLQMLFPFAPHLAEELWHWFW 795 (878)
T ss_dssp ---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHHHcccchHHHHHHHHHcC
Confidence 345678999999999999999999999998
No 16
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=2.5e-50 Score=427.49 Aligned_cols=345 Identities=13% Similarity=0.135 Sum_probs=256.8
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 92 (576)
++++| .|||+|++||||+|++|++|+++||++++| ++|.++.|+||+|++|+.+|++.|.+++++++++.+.|
T Consensus 24 ~~yv~--gPt~y~~~HiGHar~~v~~D~l~R~lr~~G-----~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f 96 (461)
T 1li5_A 24 GMYVC--GITVYDLCHIGHGRTFVAFDVVARYLRFLG-----YKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEM 96 (461)
T ss_dssp EEEEC--CCBSSSCCBHHHHHHHHHHHHHHHHHHHHT-----CEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred eEEEc--CCcCCCCCcccccHHHHHHHHHHHHHHHcC-----CCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45555 588889999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhhcCccc-cccccCCChhhHHHHHHHHHHHHhcCCcEEec-ceeeeecCCCCccccccceeccCCCCCCCCCCCCc
Q psy2393 93 KKYLDGFYIKF-DNWYSTDSIENIDLVQKIYDTLYNKAKLIINK-KINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDF 170 (576)
Q Consensus 93 ~~~l~~lgi~~-d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~-~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~ 170 (576)
++++++|||.+ |.+++++ +|...+++++++|. ++|++|+. ++.+|||+.+. .++
T Consensus 97 ~~~~~~LgI~~~d~~~r~t--~~~~~~~~~i~~L~-~~G~aY~~~~g~v~f~~~~~---------------------~~y 152 (461)
T 1li5_A 97 HKDFDALNILRPDMEPRAT--HHIAEIIELTEQLI-AKGHAYVADNGDVMFDVPTD---------------------PTY 152 (461)
T ss_dssp HHHHHHTTCCCCSBCCBGG--GCHHHHHHHHHHHH-HTTSEEECTTSCEEECGGGC---------------------TTT
T ss_pred HHHHHHcCCCCCccccccc--chHHHHHHHHHHHH-HCCCEEEecCCCEEEecccc---------------------ccc
Confidence 99999999997 7888877 48999999999999 99999999 89999987652 112
Q ss_pred cccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccc
Q psy2393 171 CECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDIS 250 (576)
Q Consensus 171 c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~is 250 (576)
+..||+.+ +++. +|+.+.... .++. |... .-|.. ..+-.++
T Consensus 153 g~lsg~~~--~~l~------~g~rv~~~~---------------------~k~~--p~Df----~lwk~----~~~g~~~ 193 (461)
T 1li5_A 153 GVLSRQDL--DQLQ------AGARVDVVD---------------------DKRN--PMDF----VLWKM----SKEGEPS 193 (461)
T ss_dssp TTTTTC---------------------------------------------CCS--TTCE----EEEEE----CCTTSCC
T ss_pred ccccCCCH--HHhh------cCCcccchh---------------------cccC--ccce----EEEcc----CCCCCCc
Confidence 23344421 1221 121111100 0000 0000 00000 0011234
Q ss_pred cCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHH
Q psy2393 251 RDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPA 330 (576)
Q Consensus 251 R~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a 330 (576)
+.. .||++.|+ |+... +.. ...+|.. ...+|++|+|++|||+.+|+|
T Consensus 194 w~s-~WG~g~Pg--------Whiec----sam------------------~~~~lg~--~~dih~gG~Dl~fpH~~~~~a 240 (461)
T 1li5_A 194 WPS-PWGAGRPG--------WHIEC----SAM------------------NCKQLGN--HFDIHGGGSDLMFPHHENEIA 240 (461)
T ss_dssp BCC-TTCSEEEC--------SSHHH----HHH------------------HHHHHCS--SEEEEECBGGGTTTHHHHHHH
T ss_pred ccC-CCCCcCCC--------ccchh----HHH------------------HHHHhCC--CceEEeccCccCchHHHHHHH
Confidence 455 79999885 65421 100 0112311 123999999999999999999
Q ss_pred HHHhc-CCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHH
Q psy2393 331 ILKFS-GRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDL 409 (576)
Q Consensus 331 ~l~~~-~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~ 409 (576)
+++++ |.+.|+.++|||||+++|+|||||+||+|+|+|++++ ||+|++|||+++. +++.+++||++.+.+..+ .
T Consensus 241 q~~a~~g~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~dll~~-~g~dalR~~ll~~--~~~~~~~fs~~~l~~~~~--~ 315 (461)
T 1li5_A 241 QSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKY-YDAETVRYFLMSG--HYRSQLNYSEENLKQARA--A 315 (461)
T ss_dssp HHHHHSSSCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTT-SCHHHHHHHHHSS--CTTSCEEECHHHHHHHHH--H
T ss_pred HHHHhcCCCCCcEEEEeeEEEECCeEccccCCCccChhHHhhh-CCHHHHHHHHHcC--CcCCCCCCCHHHHHHHHH--H
Confidence 98886 7777788999999999999999999999999999999 9999999999985 677999999998876532 2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhhhh
Q psy2393 410 IGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQTNFINIFFDQ 483 (576)
Q Consensus 410 ~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~~~~~n~y~~~ 483 (576)
+.+++|++.++ ++.++ + | .+..+.+.+.++| ++|+++.|+.+|+++++.+|+|++.
T Consensus 316 l~rl~n~~~~~--------~~~~~---~-d------~l~~~~~~~~~am~dd~n~~~Al~~l~~l~~~~N~~~~~ 372 (461)
T 1li5_A 316 LERLYTALRGT--------DKTVA---P-A------GGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAE 372 (461)
T ss_dssp HHHHHHHHTTC--------CTTSC---C-C------SCHHHHHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--------hcCCC---H-H------HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhc
Confidence 44555554322 11111 1 1 2556778899999 8999999999999999999999976
No 17
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.7e-48 Score=409.62 Aligned_cols=343 Identities=14% Similarity=0.113 Sum_probs=238.1
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 92 (576)
++.++.++|||||++||||+|+++++|+++||++++| ++|.+++|+||||++|+.+|++.|.+++++++++.+.|
T Consensus 39 ~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G-----~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~ 113 (414)
T 3c8z_A 39 TATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAG-----HTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLF 113 (414)
T ss_dssp EEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcC-----CCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3344444689999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhhcCcc-ccccccCCChhhHHHHHHHHHHHHhcCCcEEecc----eeeeecCCCCccccccceeccCCCCCCCCCC
Q psy2393 93 KKYLDGFYIK-FDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKK----INQFFDPIKNIFLPDRYIKGECPICNAKDQY 167 (576)
Q Consensus 93 ~~~l~~lgi~-~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~----~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~ 167 (576)
+++|++|||. +|.+++|++ |...++++|.+|. ++|++|+++ +.+||+... +
T Consensus 114 ~~~~~~Lgi~~~d~~~r~t~--~~~~~~~~~~~L~-~kG~~Y~~~~~~e~~~~f~~~~---------------------~ 169 (414)
T 3c8z_A 114 REDMAALRVLPPHDYVAATD--AIAEVVEMVEKLL-ASGAAYIVEDAEYPDVYFRADA---------------------T 169 (414)
T ss_dssp HHHHHHTTCCCCSEEEEGGG--CHHHHHHHHHHHH-HHTSEEECSCSSCCCEEECTTS---------------------S
T ss_pred HHHHHHcCCCCCcceecccc--hHHHHHHHHHHHH-HCCCEEeccCCcCCCEEEEchh---------------------h
Confidence 9999999998 999998874 8899999999999 999999987 666664332 0
Q ss_pred CCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcC-CCCChhHHHHHHHHHhhcCCCCC
Q psy2393 168 GDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD-KRLQPEIVNKIKEWLEKDNKFND 246 (576)
Q Consensus 168 g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~d 246 (576)
..||. .|+. + .+.+..++.+. ..... ..+ .+..|
T Consensus 170 ----~~~g~-------------l~~~------------~------~~~~~~~~~~~~~~~~~--------~~k--~~~~D 204 (414)
T 3c8z_A 170 ----AQFGY-------------ESGY------------D------RDTMLTLFAERGGDPDR--------PGK--SDQLD 204 (414)
T ss_dssp ----TTTTT-------------TTCC------------C------HHHHHHHHHHTTCCTTC--------TTC--SSTTC
T ss_pred ----hhhHh-------------hcCC------------C------HHHHHHHHhhccccccc--------ccc--CCcch
Confidence 01111 0000 0 11122110000 00000 000 11122
Q ss_pred cccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHh
Q psy2393 247 WDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHIL 326 (576)
Q Consensus 247 w~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~ 326 (576)
+. .||++.|+.+. | |++.+.- .. .|.-++. ....++|. ....+|++|+||++||+.
T Consensus 205 ~~------lWk~~~pg~~~-----W-da~~g~g-~p-gWhiec~--------a~~~~~~g--~~~di~~~G~D~~~~H~~ 260 (414)
T 3c8z_A 205 AL------LWRAERPGEPS-----W-PSPFGRG-RP-GWHVECS--------AIALTRIG--TGLDIQGGGSDLIFPHHE 260 (414)
T ss_dssp EE------EEEECCTTSCC-----B-CCTTCSE-EE-CHHHHHH--------HHHHHHTC--SCEEEEEEEGGGTTTHHH
T ss_pred hh------hcCCCCCCCCC-----C-CCCCCCC-CC-CccchhH--------HHHHHhcC--CCceEEEeccccccHHHH
Confidence 21 48888886543 6 6654321 00 0100000 01122341 123499999999999999
Q ss_pred HHHHHHHhc-CCCCCcEEeee-ccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhh
Q psy2393 327 FWPAILKFS-GRKLPNNIFVH-GFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISC 404 (576)
Q Consensus 327 ~~~a~l~~~-~~~~p~~~~~~-g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~ 404 (576)
+|+++++++ |.+++.++++| |||+++|+|||||+||+|+|++++++|||+|++|||+++. ++..|++||++.+.+.
T Consensus 261 ~~~a~~~a~~g~~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~~--~~~~d~~fs~~~l~~~ 338 (414)
T 3c8z_A 261 YSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSG--HYREDRFWSNEVLDEA 338 (414)
T ss_dssp HHHHHHHHHHCCSCSEEEEEEECCBC-------------CBHHHHHHTTCCHHHHHHHHHTS--CTTSCBCCCHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCeEEEEcCEEecCCeEcccccCCcCCHHHHhhccCCcchheeEEEec--CcCCCCCcCHHHHHHH
Confidence 999999887 76555555555 9999999999999999999999999889999999999984 5678999999988776
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHH
Q psy2393 405 VNSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQTNFINI 479 (576)
Q Consensus 405 ~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~~~~~n~ 479 (576)
.+ .+++++|+++|+ ++ + + +..+.+.+.++| ++|++++|+..|++|++.+|+
T Consensus 339 ~~--~l~~l~n~~~~~--------~~--~-----~-------~~~~~~~v~~a~~d~~~~~~Al~~i~~~~~~~n~ 390 (414)
T 3c8z_A 339 NA--RLARWRSATALP--------EA--P-----D-------ATDVIARVRQYLADDLDTPKALAALDGWCTDALS 390 (414)
T ss_dssp HH--HHHHHHHHHTSS--------CB--S-----C-------CHHHHHHHHHHHHBTCCHHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHhc--------cc--h-----h-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 43 377888876543 11 1 1 134567788999 799999999999999999988
No 18
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=1.6e-48 Score=409.68 Aligned_cols=356 Identities=17% Similarity=0.170 Sum_probs=228.4
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCC----------CcccHHHHHHHHHcCCCHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICAD----------DAHGAAIMIAAEKAGMTPK 82 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~----------D~~G~~i~~~a~~~g~~~~ 82 (576)
++||| +|||+|.+||||+|++|++|+++||++++| |+|.|++|+ |+||+||+.+|++.|.+|.
T Consensus 44 ~~Yvc--gPTvYg~~HIGHar~~v~~Dvl~R~lr~~G-----y~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~ 116 (501)
T 3sp1_A 44 KVYAC--GPTVYNYAHIGNFRTYIFGDLLIKTLRFLG-----YKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVY 116 (501)
T ss_dssp EEEEC--CCBCSSCCCHHHHHHHHHHHHHHHHHHHHT-----CCEEEEEEEBCSCCC-------------------CCHH
T ss_pred eEEeC--CCcCCCCcchhhhHHHHHHHHHHHHHHHcC-----CceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHH
Confidence 45555 588889999999999999999999999999 999999766 4559999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCC
Q psy2393 83 EFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICN 162 (576)
Q Consensus 83 ~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~ 162 (576)
+++++|.+.|.++|++|||.+|.++.+ +++|...++++|.+|. ++|++|++++.+|||+.+-.
T Consensus 117 e~a~~~~~~f~~d~~~Lgi~~d~~~~~-~t~hi~~v~~~i~~L~-~kG~aY~~~g~Vyf~v~~f~--------------- 179 (501)
T 3sp1_A 117 EISEFFTEAFFNDCRKLNIVYPDKVLV-ASKHIPIMIEVVKILE-EKKITYFSNGNVYFDTSCFK--------------- 179 (501)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSEEEE-GGGCHHHHHHHHHHHH-HTTCEEEETTEEEECGGGCT---------------
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcccC-cchHHHHHHHHHHHHH-HCCCEEEeCCcEEecCCccC---------------
Confidence 999999999999999999999887754 5789999999999999 99999999999999987631
Q ss_pred CCCCCCCccccCCCcCCCCccCCCcccCCCCccEEeeec--ceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhh
Q psy2393 163 AKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSK--HFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEK 240 (576)
Q Consensus 163 ~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~--~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 240 (576)
.||..+ |+.+. +++ .+|..++....+ .--|.+ | +. .|..
T Consensus 180 ---~yG~ls---~~~~~-~~~------~~g~r~~~~~~K~~p~Df~l-----------W--k~--~p~~----------- 220 (501)
T 3sp1_A 180 ---SYGEMA---GIDLI-DKD------MTLPRVDVDKFKRNKTDFVL-----------W--FT--NSKF----------- 220 (501)
T ss_dssp ---TTTTTT---C------------------------CCSSTTCEEE-----------E--EE--CCC------------
T ss_pred ---CccccC---CCChh-hhh------ccCCccCcccccCCchhhHh-----------c--CC--CCCC-----------
Confidence 244322 11110 011 122211111000 000001 1 00 0000
Q ss_pred cCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecC
Q psy2393 241 DNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDI 320 (576)
Q Consensus 241 ~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~ 320 (576)
..+..-| .. .||...|+ | ++.+.... .++|.+ +..||++|+|+
T Consensus 221 ~~~~~~W----~s-pwG~GrPG--------W------hiEcsam~----------------~~~lg~--~~DIH~gG~DL 263 (501)
T 3sp1_A 221 KDQEMKW----DS-PWGFGYPS--------W------HLECAAMN----------------LEYFKD--ALDIHLGGVDH 263 (501)
T ss_dssp ----CCB----CC-TTCSEEEC--------H------HHHHHHHH----------------HHHTTT--CCCEEEEEGGG
T ss_pred CCCCcee----cC-CCCCCCCC--------c------hHHHHHHH----------------HHHcCC--CceEEeecccc
Confidence 0011123 33 57776664 3 33221111 123321 01299999999
Q ss_pred cchhHhHHHHHHHhc-CCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchh
Q psy2393 321 FYFHILFWPAILKFS-GRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQ 399 (576)
Q Consensus 321 ~~fh~~~~~a~l~~~-~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~ 399 (576)
+|||+.+|+|+.+++ |.+.++.++|+|||+++|+|||||+||+|+|++++++|||+|++|||+++. +++.+++||.+
T Consensus 264 ifpHheneiAqs~a~~g~~~~~~w~H~g~v~~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~--~yr~~l~fs~~ 341 (501)
T 3sp1_A 264 IGVHHINEIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTS--HYRNQLKFSLD 341 (501)
T ss_dssp TTTHHHHHHHHHHHHHTSCCCSEEEEECCEECC----------CCCHHHHHHTTCCHHHHHHHHHTS--CTTSCEECCHH
T ss_pred ccchHHHHHHHHHHccCCCCCeEEEEeeeEeeCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhc--cCCCCCccCHH
Confidence 999999999999886 444446777779999999999999999999999999889999999999987 78899999999
Q ss_pred hHhhhhhH--HHHHHHHHHHHHHHHHHHHHc-CCCCCCcccCChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHH
Q psy2393 400 SFISCVNS--DLIGKYINIASRSSSFIEKYF-KGYLNMKWVKDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQTN 475 (576)
Q Consensus 400 ~~~~~~~~--~~~~~~~n~~~R~~~~~~~~~-~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~~~ 475 (576)
.+.+..+. +++++++|++.|+........ .... ..+ ...+..+.+.+.+|| ++|+++.|+..|+++++
T Consensus 342 ~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~f~~am~dDlnt~~al~~l~~~~~ 413 (501)
T 3sp1_A 342 NLQASKIARENLINKLSYFYESLDPVDLNTLNKDLK----NFG----FSVEKEYYDSFVEKISFDLNVAQGLALLWEIIK 413 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSCTT----SCS----SHHHHHHHHHHHHHHHBTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhhccccccccc----chh----hhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 88877554 458888888876543332210 0000 001 123455677888999 59999999999999997
Q ss_pred HHH
Q psy2393 476 FIN 478 (576)
Q Consensus 476 ~~n 478 (576)
..|
T Consensus 414 ~~~ 416 (501)
T 3sp1_A 414 SDN 416 (501)
T ss_dssp CSS
T ss_pred Hhc
Confidence 653
No 19
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=6.8e-48 Score=403.69 Aligned_cols=346 Identities=18% Similarity=0.198 Sum_probs=253.9
Q ss_pred CCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHH
Q psy2393 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISS 90 (576)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 90 (576)
..++.++.++|||+|++||||+|++|++|+++||++++| |+|.|++|+||||+||+.+|++.|.++.++++++.+
T Consensus 23 ~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~G-----y~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~ 97 (462)
T 3tqo_A 23 SGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRG-----YEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQ 97 (462)
T ss_dssp TTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTT-----CEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcC-----CceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 345556666799999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCccccccc-cCCChhhHHHHHHHHHHHHhcCCcEEec-ceeeeecCCCCccccccceeccCCCCCCCCCCC
Q psy2393 91 NRKKYLDGFYIKFDNWY-STDSIENIDLVQKIYDTLYNKAKLIINK-KINQFFDPIKNIFLPDRYIKGECPICNAKDQYG 168 (576)
Q Consensus 91 ~~~~~l~~lgi~~d~~~-~t~~~~~~~~v~~~~~~L~~~~g~iy~~-~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g 168 (576)
.|.+++++|||.+|.++ +++ +|...++++|.+|. ++|++|+. ++.+|||+.+.. .||
T Consensus 98 ~f~~d~~~LgI~~d~~~praT--e~i~~i~~~i~~L~-ekG~aY~~~~g~Vyfdv~~~~------------------~yg 156 (462)
T 3tqo_A 98 ILHEDEKALRVLSPDQEPRAT--QYVPEIIKLIQKLL-DNQYAYTGQNGDVFFDVRRFK------------------DYG 156 (462)
T ss_dssp HHHHHHHHHTCCCCSBCCBGG--GCHHHHHHHHHHHH-HHTSEEECTTSCEEECTTTCT------------------TTT
T ss_pred HHHHHHHHcCCCCCccccChh--hHHHHHHHHHHHHH-HCCCEEEecCCcEEecccccc------------------ccc
Confidence 99999999999987654 554 79999999999999 99999999 789999987642 133
Q ss_pred CccccCCCcCCCCccCCCcccCCCCccEEe--eecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCC
Q psy2393 169 DFCECCSSIYTPTKLINPYSILSGTKPIIK--SSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFND 246 (576)
Q Consensus 169 ~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~--~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d 246 (576)
..+. + +.+++. .|..+... ..+..-|.| | +.. ..+.+-
T Consensus 157 ~Ls~---~--~~~~~~------~g~r~~~~~~K~~p~DF~L-----------W--K~~----------------k~~ep~ 196 (462)
T 3tqo_A 157 KLSH---R--HLDELQ------AGARVEVSDSKRDPLDFVL-----------W--KKA----------------KPGEPK 196 (462)
T ss_dssp TTTT---C--SCC------------------CCSSTTCEEE-----------E--EEC----------------CTTSCC
T ss_pred cccC---C--ChHHhh------ccCccccccccCCccccce-----------e--eec----------------CCCCCc
Confidence 2221 0 011111 11111100 011111122 1 000 012222
Q ss_pred cccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHh
Q psy2393 247 WDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHIL 326 (576)
Q Consensus 247 w~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~ 326 (576)
| +. .||...|+ | ++.+.....+..| ..++ ||.+|.|++|||+.
T Consensus 197 W----~s-pwG~GrPG--------W------HiEcsam~~~~lG--------~~~d----------ih~gG~Dl~FpHhe 239 (462)
T 3tqo_A 197 W----DS-PWGEGRPG--------W------HIECSAMSSSILG--------QPFD----------IHGGGLDLKFPHHE 239 (462)
T ss_dssp B----CC-TTCSEEEC--------H------HHHHHHHHHHHHC--------SSEE----------EEEEEGGGTTTHHH
T ss_pred c----cC-CCCCCCCC--------C------ceehHHHHHHhcC--------CCeE----------EEccccccccHHHH
Confidence 3 33 57777665 2 3333222222223 2233 99999999999999
Q ss_pred HHHHHHHhc-CCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhh
Q psy2393 327 FWPAILKFS-GRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCV 405 (576)
Q Consensus 327 ~~~a~l~~~-~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~ 405 (576)
+..++..++ |.+.++.++|+|+|..+|+|||||+||+|+++|+++. ||+|++|||++++ +++.+++||.+.+.+.
T Consensus 240 neiaqs~a~~g~p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~-~g~dalR~~lls~--~yr~~l~fs~~~l~~a- 315 (462)
T 3tqo_A 240 NEIAQSEAGEEKPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKE-SDVEVLRYFLLSG--HYRNPLSYSKENLENG- 315 (462)
T ss_dssp HHHHHHHHHHSSCCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHH-SCHHHHHHHHHHS--CTTSCEEECHHHHHHH-
T ss_pred hHHHHHHHHcCCCcceEEEEccEEecCCcCccccCCCcccHHHHHhh-cChHHhhhhhccC--CCCCCcCcCHHHHHHH-
Confidence 999988775 5555578899999999999999999999999999999 9999999999987 7889999999987665
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhhhh
Q psy2393 406 NSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQTNFINIFFDQ 483 (576)
Q Consensus 406 ~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~~~~~n~y~~~ 483 (576)
...+++++|++.++. .. . + + .+..+.+.+.++| ++|+++.|+..|+++++..|.+.+.
T Consensus 316 -~~~l~rl~~~~~~~~--------~~-~---~-~------~~~~~~~~~~~a~~dD~nt~~a~~~l~~~~~~~n~~~~~ 374 (462)
T 3tqo_A 316 -RLALERFYLALRGLP--------VV-N---H-E------KTSSYTDRFYEAMDDDFNTPIAFALLFEMVREINRFRDN 374 (462)
T ss_dssp -HHHHHHHHHHHTTCC--------C-----------------CHHHHHHHHHHTBTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHhh--------hc-c---c-h------hHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhhhcc
Confidence 335667777653321 00 0 0 1 1234567788899 5999999999999999999987654
No 20
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=100.00 E-value=4.7e-43 Score=384.34 Aligned_cols=392 Identities=14% Similarity=0.087 Sum_probs=273.6
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHH-----------------
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM----------------- 71 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~----------------- 71 (576)
..++++.|..+.|||||++||||+|+.|++|+++|+++..| |+|.++.+++|+|.++.
T Consensus 116 ~~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G-----~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~ 190 (629)
T 2zue_A 116 GKGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLG-----YEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIM 190 (629)
T ss_dssp TTTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHH
T ss_pred CCCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcC-----CCceEEecccchhHHHHHHHHHHHHhCCcchhhh
Confidence 45678999999999999999999999999999999999999 99999999999877633
Q ss_pred ----------------------HHHHHcCCCH--------------------HHHHHHHHHHHHHHHhhcCccccccccC
Q psy2393 72 ----------------------IAAEKAGMTP--------------------KEFINNISSNRKKYLDGFYIKFDNWYST 109 (576)
Q Consensus 72 ----------------------~~a~~~g~~~--------------------~~~~~~~~~~~~~~l~~lgi~~d~~~~t 109 (576)
..+++.+.+| +++++.+.+.|++++++|||++|.|.++
T Consensus 191 ~~~~~~~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D~~~~e 270 (629)
T 2zue_A 191 NELRERGLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLVWE 270 (629)
T ss_dssp HHHHHHTSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCSEEEEH
T ss_pred hhhcccccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCccccccCc
Confidence 2233323333 7889999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhcCCcEEe---cceeeeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCC
Q psy2393 110 DSIENIDLVQKIYDTLYNKAKLIIN---KKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINP 186 (576)
Q Consensus 110 ~~~~~~~~v~~~~~~L~~~~g~iy~---~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p 186 (576)
++..+...++.++++|. ++|++|. ++..+++|..+..+ .++.++
T Consensus 271 s~~~~~~~v~~vi~~L~-~kG~~y~~~~ge~~Ga~~v~~~~~-----------------------------g~~~~~--- 317 (629)
T 2zue_A 271 SDIVRRKLFEIALELLS-KNENFYIPSDGKYRGAFVMDLRKL-----------------------------FPDMKN--- 317 (629)
T ss_dssp HHHHHTTHHHHHHHHHH-TSTTEECCSSSTTTTCEEEECTTT-----------------------------CSSSSC---
T ss_pred CccccchhHHHHHHHHH-HCCCccccccCCcCCcEEEECccc-----------------------------CCcccc---
Confidence 87666899999999999 9999992 23333333333221 111010
Q ss_pred cccCCCCccEEeeecceeEecCchhhHHHHHH--hhhcCCCCChhHHHHHHHHHhhcCC-CCCcccccCCCCCCeecCC-
Q psy2393 187 YSILSGTKPIIKSSKHFFFKLSDKRCIDFLRK--WAIHDKRLQPEIVNKIKEWLEKDNK-FNDWDISRDAPYFGIKIPN- 262 (576)
Q Consensus 187 ~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~l~~~~~-~~dw~isR~~~~WG~~iP~- 262 (576)
+..++.+....+.... ..++-.+.+ . ++..+. .+ .. ...| +| . .||+++|+
T Consensus 318 -----~~~v~~ksdG~~~Y~~--~Diay~~~K~~l-l~~~fr-----------~~--~~~~~~~-~~--~-~wG~~~Pg~ 372 (629)
T 2zue_A 318 -----PILVLRRSDGTATYTG--KDIAYHLWKFGK-IDVDLL-----------YK--EWDSTTW-TT--A-PDGKSMPNK 372 (629)
T ss_dssp -----CEEEEECTTSCBCHHH--HHHHHHHHHTTC-SCCCCE-----------EE--ECSSSCE-EE--E-EEEEECTTS
T ss_pred -----CceEEEecCCccccch--hhHHHHHHHhhc-cccccc-----------CC--ccccccc-cc--C-CCCCCCCCc
Confidence 1122322222211111 112111111 1 111110 00 01 1223 22 2 69999995
Q ss_pred --CCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhcCCCC-
Q psy2393 263 --TLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKL- 339 (576)
Q Consensus 263 --~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~~~- 339 (576)
..++++|||.....+|+. . ..+.+.++|++.
T Consensus 373 ~~~~d~~IyV~g~~q~~~~~---------------------------------------------~-l~~~l~~lG~~~~ 406 (629)
T 2zue_A 373 FGNANIVINVIGAEQKHPQL---------------------------------------------A-IKYALQLLGFEDA 406 (629)
T ss_dssp SCCCSEEEEEEEGGGHHHHH---------------------------------------------H-HHHHHHHTTCHHH
T ss_pred cCCCCcEEEEEeCcHhhHHH---------------------------------------------H-HHHHHHHcCCCCC
Confidence 456666666443222211 1 224567778765
Q ss_pred Cc--EEeeeccEEeCCccccccCC--CccChhHHhhcC--------------------------CChhHHHHHHHhhCCC
Q psy2393 340 PN--NIFVHGFMTINGKKMSKSNK--IGISPLYYLKIG--------------------------MNPEWLRYYIASKLNN 389 (576)
Q Consensus 340 p~--~~~~~g~v~~~g~KMSKS~g--n~i~~~dll~~g--------------------------~g~d~lR~~l~~~~~~ 389 (576)
++ .++.||||+++|+|||||+| |+|+++||++++ +|+|++||++++. .
T Consensus 407 ~~~~~h~~~g~V~~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~L~~--~ 484 (629)
T 2zue_A 407 AANLYHLAYEHVERPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIKY--S 484 (629)
T ss_dssp HHTEEEEEECCEEBTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHSS--C
T ss_pred CCeEEEEEeeeEEcCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHHHhc--C
Confidence 32 67888999999999999999 999999999863 8999999999997 4
Q ss_pred CCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCC-------CC----cc-cCChHHHHHHHHHHHHHHHHH
Q psy2393 390 KIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYL-------NM----KW-VKDNDTFLSKLRVVSSSIQKY 457 (576)
Q Consensus 390 ~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~-------~~----~~-~~d~~~l~~~l~~~~~~v~~a 457 (576)
...+++||++.+.+.. ++..++++|+++|+++++++...... +. .+ .+.+..|+..+..+++.+.++
T Consensus 485 ~~~~~~Fd~d~~~~~~-~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a 563 (629)
T 2zue_A 485 PDKKIIFRWEDVLNFE-GESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQA 563 (629)
T ss_dssp TTSCEECCHHHHSCCS-SSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeecHHHHHHHh-cCchHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999998875 55788999999999999988633221 00 11 112278999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhhhhcCccccccCcc-cHHHH---HHHHHHHHHHHHHHH
Q psy2393 458 YENRNFNKVLYIVIEQTNFINIFFDQNKPWKLAKNNI-YHEKL---HKISSRLLEAFRILT 514 (576)
Q Consensus 458 ~~~~~~~~~~~~l~~~~~~~n~y~~~~k~~~~~~~~~-~~~~~---~~v~~~l~~~l~~l~ 514 (576)
+++++++.++.+|++++..+|+||+.++.+. +++. ...++ .++..++.+.|.+|+
T Consensus 564 ~~~~~p~~l~~yl~~La~~fn~fy~~~~vl~--~~~~~~~~RL~L~~a~~~vL~~gL~lLG 622 (629)
T 2zue_A 564 GKDVKPHLIAWFANELASLFNKFYMDHPVLK--AEEGVREARLLLVMAVEQVLKNALYLMG 622 (629)
T ss_dssp HHTTCTHHHHHHHHHHHHHHHHHHHHCCSTT--SCTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHhccccC--CChHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999996532 2221 22232 455555555555544
No 21
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=100.00 E-value=3.4e-42 Score=376.78 Aligned_cols=391 Identities=15% Similarity=0.081 Sum_probs=264.3
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHH-------------------
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIA------------------- 73 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~------------------- 73 (576)
++.|..+.|||||++||||+|++|++|+++|+++++| |+|.++.+++|.|.++...
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G-----~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~ 178 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAG-----REVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDH 178 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTT-----EEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcC-----CceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcch
Confidence 7899999999999999999999999999999999999 9999999888887543211
Q ss_pred ---------------------------HHHcCCCHHHHHHHHHHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHH
Q psy2393 74 ---------------------------AEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLY 126 (576)
Q Consensus 74 ---------------------------a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~ 126 (576)
+.+.|.. +++++.+.+.|++++++|||++|.|.++++..+...+++++++|.
T Consensus 179 ~~g~~y~~~~~~~~~~~~~~~a~~~~~~~e~g~~-~~~~~~~~~~~~~~~~~LgI~~D~~~~es~~~~~~~v~~~~~~L~ 257 (592)
T 1iq0_A 179 FAGRAYVRLHQDPEYERLQPAIEEVLHALERGEL-REEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLE 257 (592)
T ss_dssp HHHHHHHHHHHCTTTGGGHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHhCCchHH-HHHHHHHHHHHHHHHHHcCCEeEEeccCCcccccchHHHHHHHHH
Confidence 1234443 889999999999999999999999999887666889999999999
Q ss_pred hcCCcEE-----ecceeeeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccEEeeec
Q psy2393 127 NKAKLII-----NKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSK 201 (576)
Q Consensus 127 ~~~g~iy-----~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~ 201 (576)
++|++| +.++..|+ .+.. +| ++.++ +..++.+...
T Consensus 258 -~kG~~y~~~~g~~~G~~~~--~~~~-------------------~g----------~~~~l--------~~~vi~ksdG 297 (592)
T 1iq0_A 258 -QSPHVFRPREGKYAGALVM--DASP-------------------VI----------PGLED--------PFFVLLRSNG 297 (592)
T ss_dssp -TSTTEECCSSSTTTTCEEE--ECTT-------------------TS----------CSCSC--------CEEEEECTTS
T ss_pred -HCCCcccCcccCcCCCEEE--echh-------------------cC----------CCCCC--------CceEEEecCC
Confidence 999999 44433333 2211 11 11111 1112222221
Q ss_pred ceeEecCchhhHHHHHHh-hhcCCCCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCC-CCCcEEEEEeecccchh
Q psy2393 202 HFFFKLSDKRCIDFLRKW-AIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPN-TLEKYFYVWLDAPIGYL 279 (576)
Q Consensus 202 ~~f~~l~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~-~~~~~~~vw~d~~~~~~ 279 (576)
...... ..+.-.+.+. +++.-...+ |.....+.+.|- .||+++|. ..++++|||.+...+|+
T Consensus 298 ~~~Y~~--~D~a~~~~Kl~l~~~~~~~~--------~~~~p~~r~~w~------~~g~~~~~~~~~~~iyV~g~~h~~~~ 361 (592)
T 1iq0_A 298 TATYYA--KDIAFQFWKMGILEGLRFRP--------YENPYYPGLRTS------APEGEAYTPKAEETINVVDVRQSHPQ 361 (592)
T ss_dssp CBCHHH--HHHHHHHHHTTSSCCCEEEE--------CCCSSCTTCEEE------EEEEEECCCCCSEEEEEEESSSCCCH
T ss_pred ceEEec--chHHHHHHHhhhhhhhhhhh--------hhcCcchhhccc------ccCcccCCCCCCEEEEEEeccHHHHH
Confidence 111111 1111111110 000000000 000001112221 36778775 56777777765444333
Q ss_pred hhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhcCCCC-C-c-EEeeeccEEeCCccc
Q psy2393 280 ASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKL-P-N-NIFVHGFMTINGKKM 356 (576)
Q Consensus 280 ~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~~~-p-~-~~~~~g~v~~~g~KM 356 (576)
.. ..+++.++|++. + . .++.||||+++|+||
T Consensus 362 ~~----------------------------------------------~~~~~~alG~~~~~~~~~H~~~g~v~~~g~KM 395 (592)
T 1iq0_A 362 AL----------------------------------------------VRAALALAGYPALAEKAHHLAYETVLLEGRQM 395 (592)
T ss_dssp HH----------------------------------------------HHHHHHHTTCHHHHTTEEEEEECCEEETTBCS
T ss_pred HH----------------------------------------------HHHHHHHcCCCCCCCcEEEEEeeEEEcCCCcc
Confidence 22 123556677654 2 2 578889999999999
Q ss_pred cccCCCccChhHHhhcC------------------------CChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHH
Q psy2393 357 SKSNKIGISPLYYLKIG------------------------MNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGK 412 (576)
Q Consensus 357 SKS~gn~i~~~dll~~g------------------------~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~ 412 (576)
|||+||+|+++|+++.| +|+|++||++++. ....+++||++.+.+.. ++...+
T Consensus 396 SKr~Gn~v~l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~--~~~~~~~Fd~d~~~~~~-~~~~~y 472 (592)
T 1iq0_A 396 SGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKT--EPKKQIDFRYQEALSFE-GDTGPY 472 (592)
T ss_dssp CC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHS--CTTSCEEECHHHHHCSS-SSSHHH
T ss_pred cCCCCCccCHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhc--CCCCCCeecHHHHHHHh-ccchHH
Confidence 99999999999999975 9999999999998 45689999999998875 446789
Q ss_pred HHHHHHHHHHHHHHHcCCCCCC-cc-cCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcCc----
Q psy2393 413 YINIASRSSSFIEKYFKGYLNM-KW-VKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKP---- 486 (576)
Q Consensus 413 ~~n~~~R~~~~~~~~~~~~~~~-~~-~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k~---- 486 (576)
++++++|++++++++..+..+. .+ .+.+..|+..+..+++.+.+++++++++.++++|++++..+|+||+.++|
T Consensus 473 lqya~aR~~sil~k~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~~~~yl~~La~~fn~fy~~~~~~~~~ 552 (592)
T 1iq0_A 473 VQYAHARAHSILRKAGEWGAPDLSQATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYNARENGQPA 552 (592)
T ss_dssp HHHHHHHHHHHHHHHCCCCCCCGGGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCEETTEES
T ss_pred HHHHHHHHHHHHHhhcccCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 9999999999999875432221 11 11127789999999999999999999999999999999999999999954
Q ss_pred -cccccCcc-cHHH---HHHHHHHHHHHHHHHH
Q psy2393 487 -WKLAKNNI-YHEK---LHKISSRLLEAFRILT 514 (576)
Q Consensus 487 -~~~~~~~~-~~~~---~~~v~~~l~~~l~~l~ 514 (576)
|.+.+++. ...+ +.++..++.+.|.+|+
T Consensus 553 ~~vl~~~~~~~~~RL~L~~a~~~vl~~~l~lLG 585 (592)
T 1iq0_A 553 TPVLTAPEGLRELRLSLVQSLQRTLATGLDLLG 585 (592)
T ss_dssp SCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CceeCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55543322 1122 2344455555554444
No 22
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=100.00 E-value=4e-38 Score=331.79 Aligned_cols=335 Identities=18% Similarity=0.169 Sum_probs=249.4
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHH-------HH--cCCC
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA-------EK--AGMT 80 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a-------~~--~g~~ 80 (576)
.+++++|..++|||+|++||||+|+++++|+++|++++.| ++|.....+.|.|.++...+ .+ .|.+
T Consensus 28 ~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G-----~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~ 102 (464)
T 3fnr_A 28 KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLG-----YKFNTEYYVNDAGNQIYLLGLSILLSVKESILHEN 102 (464)
T ss_dssp CSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTT-----CEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcC-----CceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCC
Confidence 5689999999999999999999999999999999999999 99999999999999984332 11 1211
Q ss_pred ---H----------------------------------HHHHHHHHHHHHHHHhhcCccccccccCCChhhHHHHHHHHH
Q psy2393 81 ---P----------------------------------KEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYD 123 (576)
Q Consensus 81 ---~----------------------------------~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~ 123 (576)
| +...+...+.+++++++|||.+|.+..+++ -|. .+.++++
T Consensus 103 ~~~p~~~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~Ess-~~~-~~~~vv~ 180 (464)
T 3fnr_A 103 VEYPEQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSERS-YYD-ALNATLE 180 (464)
T ss_dssp CCCCSSCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEEGGG-GST-THHHHHH
T ss_pred CCCchhhcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecCHHH-HHH-HHHHHHH
Confidence 0 012334566899999999999999887654 344 8999999
Q ss_pred HHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccEEeeecce
Q psy2393 124 TLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHF 203 (576)
Q Consensus 124 ~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~ 203 (576)
.|. ++|++|+.++..|+..
T Consensus 181 ~L~-~~g~~~e~dGa~~~~~------------------------------------------------------------ 199 (464)
T 3fnr_A 181 SLK-EHKGIYEQEGKIWLAS------------------------------------------------------------ 199 (464)
T ss_dssp HHH-HTTCEEEETTEEEECG------------------------------------------------------------
T ss_pred HHH-HCCCEEEeCCeEEEEe------------------------------------------------------------
Confidence 999 9999999988777621
Q ss_pred eEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhh-c
Q psy2393 204 FFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLAS-L 282 (576)
Q Consensus 204 f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~-~ 282 (576)
+++ +.-.|..|-|+. |.+. |++. +
T Consensus 200 ------~~~-----------------------------g~~~~~vl~ksD---G~~~-----------------Y~t~Di 224 (464)
T 3fnr_A 200 ------SQK-----------------------------GDEKDRVIIRED---GRGT-----------------YLAADI 224 (464)
T ss_dssp ------GGG-----------------------------TCSSCEEEECTT---SCBC-----------------HHHHHH
T ss_pred ------ccc-----------------------------CCCCceEEEeCC---Ccee-----------------hhhHHH
Confidence 110 000123333433 3321 3322 1
Q ss_pred chhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhcCCCCCc-EEeeeccEEe--CCc--ccc
Q psy2393 283 KNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPN-NIFVHGFMTI--NGK--KMS 357 (576)
Q Consensus 283 ~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~~~p~-~~~~~g~v~~--~g~--KMS 357 (576)
.+...+ ++. ...++|++.|.||......+ .+++.++|.++++ .+++||||++ +|+ |||
T Consensus 225 A~~~~r------------~~~----~~d~~Iyv~G~dq~~~f~~l-~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMS 287 (464)
T 3fnr_A 225 VYHKDK------------MSR----GYGKCINIWGADHHGYIPRM-KAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMS 287 (464)
T ss_dssp HHHHHH------------HTS----SCSEEEEEEEGGGGGGHHHH-HHHHHTTTCCGGGEEEEEECCEEEEETTEECCC-
T ss_pred HHHHHH------------HHc----CCCeEEEEecCcHHHHHHHH-HHHHHHcCCCccceEEEEeeeEEecCCCcccCCc
Confidence 111110 000 01356999999998433333 3567888987665 8899999976 886 999
Q ss_pred ccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCC--CC-
Q psy2393 358 KSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYL--NM- 434 (576)
Q Consensus 358 KS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~--~~- 434 (576)
||+||+|+++|++++ +|+|++|||+++. ....+++||++.+.+..|.+.+.+++++++|+++++++...... +.
T Consensus 288 Kr~Gn~v~l~dll~~-~g~dalRy~~l~~--~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~~~~~~~~~~ 364 (464)
T 3fnr_A 288 KRAGNFILMSDVVDE-IGSDALRYIFLSK--KCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKA 364 (464)
T ss_dssp --CCSSCBHHHHHHH-HCHHHHHHHTTSS--CTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTCCTTTSTTC
T ss_pred CcCCCCCCHHHHHhh-ccHHHHHHHHHhc--CCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 999999999999999 9999999999987 45688999999998876555555788999999999988643221 11
Q ss_pred ---cccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcCcc
Q psy2393 435 ---KWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPW 487 (576)
Q Consensus 435 ---~~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k~~ 487 (576)
.+..++.+|+..+..+++.+.+++++++|++++++|++|+..+|+||+.++..
T Consensus 365 ~~~~L~~~e~~Ll~~L~~~~~~v~~a~~~~ep~~i~~yL~~La~~~n~fY~~~~vl 420 (464)
T 3fnr_A 365 DLQSLNQDGVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVV 420 (464)
T ss_dssp CCTTCCHHHHHHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHCCCT
T ss_pred ChhhCChHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 12211389999999999999999999999999999999999999999999853
No 23
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=100.00 E-value=1.4e-34 Score=314.89 Aligned_cols=336 Identities=13% Similarity=0.116 Sum_probs=244.4
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHH-----------------
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM----------------- 71 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~----------------- 71 (576)
..+++++|..+.|||||++||||+|+++++|+++|+++..| |+|.++.+++|+|.++.
T Consensus 140 ~~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G-----~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~ 214 (607)
T 1f7u_A 140 VENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLG-----WEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVK 214 (607)
T ss_dssp SSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTT-----CEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHH
T ss_pred cCCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcC-----CCeeEEEeecCcchHHHHHHHHHHHhCchhhccC
Confidence 35678999999999999999999999999999999999999 99999999999877652
Q ss_pred -------------------------------HHHHH------cCCC-----HHHHHHHHHHHHHHHHhhcCccccccccC
Q psy2393 72 -------------------------------IAAEK------AGMT-----PKEFINNISSNRKKYLDGFYIKFDNWYST 109 (576)
Q Consensus 72 -------------------------------~~a~~------~g~~-----~~~~~~~~~~~~~~~l~~lgi~~d~~~~t 109 (576)
..|++ .|.+ .+++++.+.+.|++++++|||.+|.+.++
T Consensus 215 ~~i~~l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~E 294 (607)
T 1f7u_A 215 DPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGE 294 (607)
T ss_dssp CHHHHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEG
T ss_pred CChHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCc
Confidence 22333 2443 46789999999999999999999998887
Q ss_pred CChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCccc
Q psy2393 110 DSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSI 189 (576)
Q Consensus 110 ~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~ 189 (576)
++ .+...+..+++.|. ++|++|+.++.+|++... +| .
T Consensus 295 S~-~~~~~~~~vi~~L~-~kG~~ye~dGa~~~~~~~---------------------~g-------~------------- 331 (607)
T 1f7u_A 295 SQ-VSKESMLKAIDLFK-EKGLTHEDKGAVLIDLTK---------------------FN-------K------------- 331 (607)
T ss_dssp GG-CCHHHHHHHHHHHH-HTTCEEEETTEEEEEGGG---------------------TC-------T-------------
T ss_pred ch-hhhhHHHHHHHHHH-hCCCEEEECCcEEEEecc---------------------cC-------C-------------
Confidence 64 23378899999999 999999988887773211 00 0
Q ss_pred CCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEE
Q psy2393 190 LSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFY 269 (576)
Q Consensus 190 ~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~ 269 (576)
+..+..+-|.. |.+ +
T Consensus 332 -----------------------------------------------------~~d~~v~~KsD---G~~--------~- 346 (607)
T 1f7u_A 332 -----------------------------------------------------KLGKAIVQKSD---GTT--------L- 346 (607)
T ss_dssp -----------------------------------------------------TTCEEEEECTT---SCC--------C-
T ss_pred -----------------------------------------------------CCCceeEeccC---CCc--------C-
Confidence 00000111111 111 0
Q ss_pred EEeecccchhhh-cchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeecc
Q psy2393 270 VWLDAPIGYLAS-LKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGF 348 (576)
Q Consensus 270 vw~d~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~ 348 (576)
|.+. ......+ +..+ ...++|++.|.||......++ +++.++|++.+..+.|.+|
T Consensus 347 --------Y~t~Dia~~~~k------------~~~~---~~d~~IyV~g~~q~~~f~q~~-~~~~~lG~~~~~~~~Hv~f 402 (607)
T 1f7u_A 347 --------YLTRDVGAAMDR------------YEKY---HFDKMIYVIASQQDLHAAQFF-EILKQMGFEWAKDLQHVNF 402 (607)
T ss_dssp --------HHHHHHHHHHHH------------HHHH---CCSEEEEECCGGGHHHHHHHH-HHHHHTTCGGGGGEEEECC
T ss_pred --------CCCCcHHHHHHH------------Hhhc---CCCcEEEEEcChHhhHHHHHH-HHHHHcCCCcCcEEEEecc
Confidence 1110 0000000 0000 012347777777753223333 4577788876666777676
Q ss_pred EEeCCccccccCCCccChhHHhhcCCCh----------------------------hHHHHHHHhhCCCCCCCcccchhh
Q psy2393 349 MTINGKKMSKSNKIGISPLYYLKIGMNP----------------------------EWLRYYIASKLNNKIEDIDFNSQS 400 (576)
Q Consensus 349 v~~~g~KMSKS~gn~i~~~dll~~g~g~----------------------------d~lR~~l~~~~~~~~~d~~fs~~~ 400 (576)
.+++ |||||+||+|+++||++. ++. .++||++++. +++.+++||++.
T Consensus 403 g~v~--kMSkR~G~~v~L~dLlde-~~~~a~~~~~~~~~~~~~~~e~~~~a~~vgi~avry~~Ls~--~~~s~~~Fd~d~ 477 (607)
T 1f7u_A 403 GMVQ--GMSTRKGTVVFLDNILEE-TKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQG--KRINNYEFKWER 477 (607)
T ss_dssp CCEE--SCCGGGTCCCBHHHHHHH-HHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSS--CTTCCEECCHHH
T ss_pred cccc--cccCCCCCcccHHHHHHH-HHHHHHHHHHhCcccccchhhHHHHHHHHHHHHHHHHHhcc--CCCCCcccCHHH
Confidence 4444 699999999999999998 633 5899999997 778899999999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHcC-C-----CCCCc-cc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy2393 401 FISCVNSDLIGKYINIASRSSSFIEKYFK-G-----YLNMK-WV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIE 472 (576)
Q Consensus 401 ~~~~~~~~~~~~~~n~~~R~~~~~~~~~~-~-----~~~~~-~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~ 472 (576)
+.+.. ++...+++++++|+++++++..+ . ..+.. +. +++..|+..|..+++.+.+++++++++.++.+|++
T Consensus 478 ~~~~~-g~t~pylqYa~aRi~SIlrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~ 556 (607)
T 1f7u_A 478 MLSFE-GDTGPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFK 556 (607)
T ss_dssp HHCCS-SSSHHHHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHh-ccchHHHHHHHHHHHHHHHHhcCCCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 98875 45667999999999999998621 0 00101 21 12278999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCcc
Q psy2393 473 QTNFINIFFDQNKPW 487 (576)
Q Consensus 473 ~~~~~n~y~~~~k~~ 487 (576)
++..+|+||+.++..
T Consensus 557 La~~fn~fY~~~~Vl 571 (607)
T 1f7u_A 557 LTHQVSSCYDVLWVA 571 (607)
T ss_dssp HHHHHHHHHHHCCST
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999999854
No 24
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.97 E-value=1e-32 Score=298.41 Aligned_cols=283 Identities=14% Similarity=0.125 Sum_probs=183.7
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCccc--HHH---HHHHHHc--CCCH----
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHG--AAI---MIAAEKA--GMTP---- 81 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G--~~i---~~~a~~~--g~~~---- 81 (576)
+.+||.+.|||||++||||+|+++++|+++||++++| ++|.|+.++||+| .+| +.++.+. |.++
T Consensus 20 ~~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g-----~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p 94 (523)
T 1irx_A 20 EKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKG-----YEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVP 94 (523)
T ss_dssp SEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTT-----CEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSC
T ss_pred CeEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcC-----CCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCC
Confidence 4678877899999999999999999999999999999 9999999999999 777 5555555 8877
Q ss_pred ------HHHHHHHHHHHHHHHhhcCccccccccCCChhhHH-HHHHHHHHHHhcCC-cEEeccee-------eeecCCCC
Q psy2393 82 ------KEFINNISSNRKKYLDGFYIKFDNWYSTDSIENID-LVQKIYDTLYNKAK-LIINKKIN-------QFFDPIKN 146 (576)
Q Consensus 82 ------~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~-~v~~~~~~L~~~~g-~iy~~~~~-------~~~~~~~~ 146 (576)
+++++++.+.|.++|++|||++|.+ ++++. |.. .+++++.+|. ++| .||.-... ..||. +
T Consensus 95 ~p~~~~~~~~~~~~~~~~~~l~~Lgi~~D~~-~~se~-~~~g~~~~~i~~L~-~~G~~iy~~~~~~~g~~~~~~y~~--~ 169 (523)
T 1irx_A 95 DPWGCHESYAEHFMRKFEEEVEKLGIEVDLL-YASEL-YKRGEYSEEIRLAF-EKRDKIMEILNKYREIAKQPPLPE--N 169 (523)
T ss_dssp CTTSSSSSHHHHHHHHHHHHHHTTTCCCEEE-EHHHH-HHTTTTHHHHHHHH-HTHHHHHHHHHHHHHHTTCCCCCT--T
T ss_pred cchhhHHHHHHHHHHHHHHHHHHcCCCceEE-echhh-ccchHHHHHHHHHH-HchHHHHHHHHhhccccccccccC--C
Confidence 8899999999999999999999987 55532 777 8899999999 999 66632111 23322 0
Q ss_pred ccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCC
Q psy2393 147 IFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRL 226 (576)
Q Consensus 147 ~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~ 226 (576)
+++ ...+|..||+..... .......+.+.+
T Consensus 170 -~~~----------------~~~~~~~~~~~~~~~--------------~~~~~~~~~f~~------------------- 199 (523)
T 1irx_A 170 -WWP----------------AMVYCPEHRREAEII--------------EWDGGWKVKYKC------------------- 199 (523)
T ss_dssp -CCS----------------EEEECTTTCCEECEE--------------EECSSSCEEECC-------------------
T ss_pred -cee----------------ccccchhhCCccccc--------------ccCCCCceeeee-------------------
Confidence 221 112244555432110 000000111111
Q ss_pred ChhHHHHHHHHHhhcCCCCCcccccCCCCC-CeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccc
Q psy2393 227 QPEIVNKIKEWLEKDNKFNDWDISRDAPYF-GIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFI 305 (576)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~~dw~isR~~~~W-G~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w 305 (576)
+ .|...|. . .| |...|. | .+.. +.-.. .+
T Consensus 200 ------------~--~g~~~~~----d-~~~G~g~~~--------w------~~d~-~~~~~----------------~l 229 (523)
T 1irx_A 200 ------------P--EGHEGWV----D-IRSGNVKLR--------W------RVDW-PMRWS----------------HF 229 (523)
T ss_dssp ------------S--SSCCCEE----C-TTSSCEEEC--------H------HHHH-HHHHH----------------HS
T ss_pred ------------c--CCCcccc----C-CcCCCCCCC--------C------Ccch-HhhHH----------------Hc
Confidence 0 1212221 1 23 322221 1 0000 00000 01
Q ss_pred cCCCcceEEEeeecCcchh----HhHHHHHHHhcCCCCCcEEeeeccEEeC--CccccccCCCccChhHHhhcCCChhHH
Q psy2393 306 SSPNTEQYHFIGKDIFYFH----ILFWPAILKFSGRKLPNNIFVHGFMTIN--GKKMSKSNKIGISPLYYLKIGMNPEWL 379 (576)
Q Consensus 306 ~~~~~~~i~~~G~D~~~fh----~~~~~a~l~~~~~~~p~~~~~~g~v~~~--g~KMSKS~gn~i~~~dll~~g~g~d~l 379 (576)
.. .++++|+||+++| +..++++ .++|.+.| .++|||||+++ |+|||||+||+|+++++++. |++|++
T Consensus 230 ~~----~vd~~G~Dh~~~h~s~~~~~~i~~-~alG~~~p-~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~-~~pdal 302 (523)
T 1irx_A 230 GV----DFEPAGKDHLVAGSSYDTGKEIIK-EVYGKEAP-LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEV-LEPGLV 302 (523)
T ss_dssp CC----CBCCEEHHHHSTTSHHHHHHHHHH-HHHCCCCC-BCCEECCEEESCC---------CCCCHHHHHTT-SCHHHH
T ss_pred CC----CCcCCCcCccCCCcchhhHHHHHH-HHhCCCCC-eEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHH-cCHHHH
Confidence 11 2668899999999 5666663 67888777 78999999998 89999999999999999999 999999
Q ss_pred HHHHHhhCCCCCCCcccchh-hHhhhhhHHHHHHHHHH
Q psy2393 380 RYYIASKLNNKIEDIDFNSQ-SFISCVNSDLIGKYINI 416 (576)
Q Consensus 380 R~~l~~~~~~~~~d~~fs~~-~~~~~~~~~~~~~~~n~ 416 (576)
|||+++. .+..+++||++ .+.+..+ .+.++.+.
T Consensus 303 R~~l~~~--~~~~~~~fs~~~~l~~~~~--~~~~~~~~ 336 (523)
T 1irx_A 303 RFIYARH--RPNKEIKIDLGLGILNLYD--EFEKVERI 336 (523)
T ss_dssp HHHHHSS--CTTSCEEECCSTTHHHHHH--HHHHHHHH
T ss_pred HHHHHhc--CCCCCceeCcchhHHHHHH--HHHHHHHH
Confidence 9999986 34578899998 6655432 23445444
No 25
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.78 E-value=2.1e-18 Score=182.33 Aligned_cols=94 Identities=15% Similarity=0.125 Sum_probs=76.7
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|+|||+|||||||++++...++| + +.+.++..+||.+.+ .-...|.+.|.+
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar-----~-----~~G~~iLRieDtD~~-------------R~~~e~~~~I~e 153 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYAR-----K-----YDGRLILRIEDTDPR-------------RVDPEAYDMIPA 153 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH-----H-----TTCEEEEEECCCCGG-------------GCCTTHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----H-----cCCEEEEEECcCCcc-------------cccHHHHHHHHH
Confidence 67888999999999999999998777766 4 445666666666544 113577899999
Q ss_pred HHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|+.||+.||..++.+ +|.+...+++.+|. ++|++|.
T Consensus 154 dL~wLGl~wd~~~~qS--dr~~~y~~~~~~Li-~~G~AY~ 190 (553)
T 3aii_A 154 DLEWLGVEWDETVIQS--DRMETYYEYTEKLI-ERGGAYV 190 (553)
T ss_dssp HHHHHTCCCSEEEEGG--GGHHHHHHHHHHHH-HTTSEEE
T ss_pred HHHHcCCCCCCCcccc--cCHHHHHHHHHHHH-HcCCcee
Confidence 9999999999776655 68899999999999 9999996
No 26
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.70 E-value=4.6e-16 Score=164.58 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=76.6
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
..++++-.+|+|||+|||||+|+++++|.++|. ..| .-++.+-.+|. ....+.+.+.
T Consensus 11 ~~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G-----~~iLRieDtD~----------------~r~~~~~~~~ 67 (481)
T 2o5r_A 11 HHMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKG-----KFILRIEDTDL----------------ERSEREYEEK 67 (481)
T ss_dssp --CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTC-----EEEECBCCSSC----------------CSGGGHHHHH
T ss_pred ceEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCC-----eEEEEEecCCc----------------cccHHHHHHH
Confidence 356788889999999999999999999999996 678 77777665552 1223556778
Q ss_pred HHHHHhhcCcccccc---------ccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 92 RKKYLDGFYIKFDNW---------YSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 92 ~~~~l~~lgi~~d~~---------~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
|.++|+.+|+++|.. |+ ..++.+..+++..+|. ++|.+|.
T Consensus 68 I~~~l~wlGl~~de~p~~gg~~g~y~--QS~r~~~y~~~a~~L~-~~G~aY~ 116 (481)
T 2o5r_A 68 LMESLRWLGLLWDEGPDVGGDHGPYR--QSERVEIYREHAERLV-KEGKAYY 116 (481)
T ss_dssp HHHHHHHHTCCCSBBTTTBCTTCCCB--GGGGHHHHHHHHHHHH-HTTSEEE
T ss_pred HHHHHHHcCCCCCCCcccCCCCCcee--eeccHHHHHHHHHHHH-HCCCeeE
Confidence 899999999999853 33 3467888889999999 9999884
No 27
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=99.69 E-value=3.8e-16 Score=165.09 Aligned_cols=94 Identities=16% Similarity=0.054 Sum_probs=72.7
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|+|||.|||||||++++.+.++| .+.| .-++.+ ||.+.. ...+.+.+.|.+
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar--~~gG-----~fiLRi---eDTD~~-------------R~~~e~~~~I~e 83 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQ--DYKG-----QCNLRF---DDTNPV-------------KEDIEYVESIKN 83 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHH--HTTC-----EEEEEE---CCCCGG-------------GCCHHHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCC-----EEEEEE---CCCCch-------------hcCHHHHHHHHH
Confidence 66777899999999999999999888887 4455 444444 444331 134678899999
Q ss_pred HHhhcCcccc-ccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFD-NWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d-~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|+.||+.+| ..++.+ +|.+...+...+|. ++|++|.
T Consensus 84 dL~wLGl~wde~~~~qS--er~~~~~~~a~~Li-~~G~AY~ 121 (553)
T 1qtq_A 84 DVEWLGFHWSGNVRYSS--DYFDQLHAYAIELI-NKGLAYV 121 (553)
T ss_dssp HHHHTTCCCSSSCEEGG--GGHHHHHHHHHHHH-HTTSEEE
T ss_pred HHHHcCCCCCCCCeehc--ccHHHHHHHHHHHH-HCCCcee
Confidence 9999999995 555544 57777777888999 9999996
No 28
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.69 E-value=1.2e-15 Score=161.55 Aligned_cols=93 Identities=19% Similarity=0.205 Sum_probs=71.1
Q ss_pred EEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2393 16 VTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKY 95 (576)
Q Consensus 16 v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 95 (576)
++--+|+|||.|||||+|+++....++| ...| .-++.+-.+|. . . -.+.+.+.|.++
T Consensus 3 ~~RFAPSPtG~lHiG~artal~n~l~Ar--~~~G-----~filRieDtD~---~--------R-----~~~~~~~~i~~d 59 (492)
T 2cfo_A 3 RVRLAPSPTGNLHIGTARTAVFNWLYAR--HRGG-----KFILRIEDTDR---E--------R-----SRPEYTENILEG 59 (492)
T ss_dssp EEEECCCTTSCCBHHHHHHHHHHHHHHH--HTTC-----EEEEEECCCSS---S--------S-----CCHHHHHHHHHH
T ss_pred eEEeCCCCCCCccHHHHHHHHHHHHHHH--hcCC-----eEEEEEeeCCc---c--------c-----cchHHHHHHHHH
Confidence 4556899999999999999999777777 3445 54555544442 1 1 125678999999
Q ss_pred HhhcCccccc-cccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 96 LDGFYIKFDN-WYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 96 l~~lgi~~d~-~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
|++||++||. .++.+ ++.+..++++.+|. ++|++|.
T Consensus 60 L~wLGl~wde~~~~QS--~r~~~y~~~~~~Li-~~G~AY~ 96 (492)
T 2cfo_A 60 LQWLGLTWDEGPYFQS--DRLDLYRQAIQTLL-DKGLAYY 96 (492)
T ss_dssp HHHTTCCCSEEEEEGG--GCHHHHHHHHHHHH-HTTSEEE
T ss_pred HHHcCCCCCCCCcccc--CCHHHHHHHHHHHH-HCCCceE
Confidence 9999999985 55544 67788889999999 9999996
No 29
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.66 E-value=2.8e-16 Score=169.74 Aligned_cols=245 Identities=16% Similarity=0.152 Sum_probs=145.8
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 92 (576)
++.+ --+|+|||+|||||+|++++.+.++|. +.| .-++.+-.+|. ..-...+.+.|
T Consensus 129 ~v~~-RFaPsPTG~LHiG~artAl~n~l~Ar~--~~G-----~~ilRieDtD~----------------~r~~~~~~~~I 184 (592)
T 3al0_C 129 LVRV-RFAPSPTGHLHVGGARTALFNWMFARK--EGG-----KFILRIEDTDT----------------ERSSREYEQQI 184 (592)
T ss_dssp CCEE-EECCCSSSCCBHHHHHHHHHHHHHHHH--HTC-----EEEECBCCCCS----------------SSCCHHHHHHH
T ss_pred eEEE-EECCCCCCCccHHHHHHHHHHHHHHHh--cCC-----cEEEEecCcCh----------------hhccHHHHHHH
Confidence 4444 445999999999999999999999994 567 65555544431 12235677899
Q ss_pred HHHHhhcCcccccc---------ccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCC
Q psy2393 93 KKYLDGFYIKFDNW---------YSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNA 163 (576)
Q Consensus 93 ~~~l~~lgi~~d~~---------~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~ 163 (576)
.++|++||++||.- ++.+ ++....++++.+|. ++|++|.- ||...+- ... ..|
T Consensus 185 ~~dL~wlGl~~D~~~~~gG~~gp~~qS--er~~~y~~~~~~L~-~~G~aY~c-----~ct~~el--~~~----~~~---- 246 (592)
T 3al0_C 185 LESLRWCGLDWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLV-EDKRAYYV-----VYDKEDP--SKE----LFT---- 246 (592)
T ss_dssp HHHHHHTTCCCSBBTTTBCTTCCCBST--TCHHHHHHHHHHHH-HTTTEEEE-----EEETTEE--EEE----CCC----
T ss_pred HHHHHHcCCCCCCCCCcCCCCCCeeee--CCHHHHHHHHHHHH-HcCCceEe-----cCCHHHH--Hhh----cCC----
Confidence 99999999999972 3444 56688899999999 99999962 2211100 000 000
Q ss_pred CCCCCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCch----hhHHHHHHhhhcC-CCCChhHHHHHHHHH
Q psy2393 164 KDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDK----RCIDFLRKWAIHD-KRLQPEIVNKIKEWL 238 (576)
Q Consensus 164 ~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~----~~~~~l~~~~~~~-~~~~~~~~~~~~~~l 238 (576)
.|...|.. + ..|.+.. |-+++ + .+.+. +.. ..+++
T Consensus 247 --~Y~~~~~~---------~------~~g~~~~------iR~k~--~~~~~~~~D~-----v~G~~~~~~---------- 286 (592)
T 3al0_C 247 --TYEYPHEY---------K------EKGHPVT------IKFKV--LPGKTSFEDL-----LKGYMEFDN---------- 286 (592)
T ss_dssp --CSSCCHHH---------H------HTTCCEE------EEECC--CSSCCEECCT-----TTCSEECCS----------
T ss_pred --CCCcHHHH---------h------hcCCCce------EEEEC--CCCCceeeec-----ccceeeecc----------
Confidence 00000000 0 0011111 11122 1 00000 100 01111
Q ss_pred hhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchh-hhcchhhhhCCCCCcccccccccccccCCCcceEEEe-
Q psy2393 239 EKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYL-ASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFI- 316 (576)
Q Consensus 239 ~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~- 316 (576)
....||.|-|.. |.|. |. +..- ++. ...+.|++
T Consensus 287 ---~~~~D~Vl~R~d---g~pt-----------------Y~~a~vv------------------DD~----~~githvir 321 (592)
T 3al0_C 287 ---STLEDFIIMKSN---GFPT-----------------YNFAVVV------------------DDH----LMRISHVFR 321 (592)
T ss_dssp ---SSSCCEEEECTT---SCCC-----------------HHHHHHH------------------HHH----HTTCSBCCE
T ss_pred ---ccCCCeEEEcCC---CCee-----------------hhhHHHH------------------HHH----hcCCCeEEE
Confidence 244677777765 4431 21 1110 000 01125555
Q ss_pred eecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhC
Q psy2393 317 GKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKL 387 (576)
Q Consensus 317 G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~ 387 (576)
|.|++. ++.....+..++|.+.|. +.|+.+++. +|+|||||.|+ ++++++.+.||.++++|.|++..+
T Consensus 322 G~D~~~-~t~~q~~l~~alg~~~P~-~~hlpli~~~~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~lG 390 (592)
T 3al0_C 322 GEDHLS-NTPKQLMIYEAFGWEAPV-FMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLG 390 (592)
T ss_dssp EGGGGG-GHHHHHHHHTTTTCCCCB-CCEECCCBCTTSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTTTT
T ss_pred chhhHh-CHHHHHHHHHHhCCCCCe-EEEeeeeeCCCCCcccccCCc-ccHHHHHHCCCCHHHHHHHHHHhC
Confidence 999974 444445567888988774 456666655 89999999998 689999999999999999998864
No 30
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.66 E-value=3.3e-15 Score=157.74 Aligned_cols=260 Identities=16% Similarity=0.130 Sum_probs=153.1
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|+|||.|||||+|+++....++| ...| .-++++-.+|. + .....+.+.|.+
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar--~~~G-----~filRieDtD~---~-------------R~~~~~~~~I~~ 82 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFAR--KEGG-----KFILRIEDTDT---E-------------RSSREYEQQILE 82 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHH--HHTC-----EEEECBCCCCT---T-------------TCCHHHHHHHHH
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHH--HcCC-----EEEEEEeeCCc---c-------------cccHHHHHHHHH
Confidence 56777899999999999999999999988 4566 55555544432 2 123567789999
Q ss_pred HHhhcCcccccc---------ccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCC
Q psy2393 95 YLDGFYIKFDNW---------YSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKD 165 (576)
Q Consensus 95 ~l~~lgi~~d~~---------~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~ 165 (576)
+|++||++||.- ++.+ ++.+..+++..+|. ++|++|.- ||...+- ... . -|
T Consensus 83 dL~wlGl~wDe~~~~gG~~gp~~QS--er~~~y~~~~~~L~-~~G~aY~c-----~ct~eel--~~~--~--~~------ 142 (488)
T 3afh_A 83 SLRWCGLDWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLV-EDKRAYYV-----VYDKEDP--SKE--L--FT------ 142 (488)
T ss_dssp HHHHTTCCCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHH-HTTSEEEE-----EECSSST--TSE--E--EE------
T ss_pred HHHHcCCCCCcCCCCCCCCCCeeee--CCHHHHHHHHHHHH-HcCCeEec-----CCCHHHH--Hhh--c--CC------
Confidence 999999999973 3433 56788899999999 99999962 2221110 000 0 00
Q ss_pred CCCCccccCCCcCCCCccCCCcccCCCCccEEee-ec---ceeEecCchhhHHHHHHhhhcC-CCCChhHHHHHHHHHhh
Q psy2393 166 QYGDFCECCSSIYTPTKLINPYSILSGTKPIIKS-SK---HFFFKLSDKRCIDFLRKWAIHD-KRLQPEIVNKIKEWLEK 240 (576)
Q Consensus 166 ~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~-~~---~~f~~l~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~ 240 (576)
.|...|.. + ..|.+..+|. .. --|-++ +.. ..+++
T Consensus 143 ~Y~~~~~~---------~------~~G~~~~iR~k~~~~~~~~~D~-------------v~G~~~~~~------------ 182 (488)
T 3afh_A 143 TYEYPHEY---------K------EKGHPVTIKFKVLPGKTSFEDL-------------LKGYMEFDN------------ 182 (488)
T ss_dssp ESSCCHHH---------H------HTTCCEEEEECCCSSEEEEEET-------------TTEEEEEEG------------
T ss_pred CCCchhhH---------H------hcCCCceEEEECCCCceeEEec-------------cceeEeecC------------
Confidence 00000000 0 0011111110 00 001011 000 00111
Q ss_pred cCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchh-hhcchhhhhCCCCCcccccccccccccCCCcceEEEe-ee
Q psy2393 241 DNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYL-ASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFI-GK 318 (576)
Q Consensus 241 ~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~-G~ 318 (576)
....||.|-|.. |.|. |- +..- ++. ...+.|++ |.
T Consensus 183 -~~~~D~Vl~R~D---G~Pt-----------------Y~lA~vV------------------DD~----~mgIThViRG~ 219 (488)
T 3afh_A 183 -STLEDFIIMKSN---GFPT-----------------YNFAVVV------------------DDH----LMRISHVFRGE 219 (488)
T ss_dssp -GGSCCEEEECTT---SCBC-----------------HHHHHHH------------------HHH----HTTCSEEEEEG
T ss_pred -CCCCCeEEEecC---CCee-----------------hhhHHHH------------------HHH----hcCCCEEEEch
Confidence 134577777665 4431 21 1110 000 11236666 99
Q ss_pred cCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccc
Q psy2393 319 DIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFN 397 (576)
Q Consensus 319 D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs 397 (576)
|++. ++.....+..++|.+.| .+.|+.+++. +|+|||||.|+ ++++++.+.||.+++|+.|++..+.....+-.|+
T Consensus 220 D~l~-~tp~q~~l~~aLG~~~P-~f~H~pli~~~~g~KLSKR~g~-~~l~~~r~~G~~peal~n~l~~lG~s~~~~e~~s 296 (488)
T 3afh_A 220 DHLS-NTPKQLMIYEAFGWEAP-VFMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGWRVEGDEIFT 296 (488)
T ss_dssp GGGG-GHHHHHHHHHHHTCCCC-EEEEECCEECTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHTTCCCSSCSCCC
T ss_pred hhhh-CHHHHHHHHHHcCCCCC-eEEEEeeeeCCCCCcccCcCCc-ccHHHHHHCCCCHHHHHHHHHHhCCCCcccccCC
Confidence 9973 34444456788898877 5667778766 89999999998 6899999999999999999998643322223456
Q ss_pred hhhHhh
Q psy2393 398 SQSFIS 403 (576)
Q Consensus 398 ~~~~~~ 403 (576)
.+++.+
T Consensus 297 ~~e~i~ 302 (488)
T 3afh_A 297 IEEKLQ 302 (488)
T ss_dssp HHHHGG
T ss_pred HHHHHh
Confidence 555433
No 31
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=99.63 E-value=1.5e-14 Score=151.88 Aligned_cols=273 Identities=18% Similarity=0.224 Sum_probs=155.6
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|+|||++||||+|+++..+.++| ...| .-++.+-.+|.. ...+.+.+.|.+
T Consensus 26 v~~RFAPSPTG~lHiG~~rtal~n~l~Ar--~~~G-----~filRieDtD~~----------------R~~~~~~~~i~~ 82 (490)
T 4g6z_A 26 VRTRFAPSPTGFIHLGNIRSALYPWAFAR--KMKG-----TFVLRIEDTDVE----------------RSSQEAVDAILE 82 (490)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHH--HTTC-----EEEEEECCCCGG----------------GCCHHHHHHHHH
T ss_pred ceEEeCCCCCCCccHHHHHHHHHHHHHHH--hcCC-----eEEEEeCCCCcc----------------cccHHHHHHHHH
Confidence 56677899999999999999999999888 3456 666666555531 113578899999
Q ss_pred HHhhcCccccc-cccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCcccccc----ceeccCCCCCCCCCCCC
Q psy2393 95 YLDGFYIKFDN-WYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDR----YIKGECPICNAKDQYGD 169 (576)
Q Consensus 95 ~l~~lgi~~d~-~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~----~v~~~~p~c~~~~~~g~ 169 (576)
+|++||++||. .++.+ ++.+..++++.+|. ++|++|. -||...+ +... .-.|.-| .|..
T Consensus 83 dl~wlGl~~d~~~~~qS--~r~~~y~~~~~~Li-~~G~aY~-----C~ct~ee--l~~~r~~~~~~~~~~------~Y~~ 146 (490)
T 4g6z_A 83 GMAWLGLDYDEGPYYQM--QRMDRYREVLAQMQ-EKGLVYP-----CYMSTEE--LDALRERQRAAGEKP------RYDG 146 (490)
T ss_dssp HHHHTTCCCSEEEEEGG--GCHHHHHHHHHHHH-HTTSEEE-----ECC---------------------------CCCC
T ss_pred HHHHcCCCCCCCCcccc--cCHHHHHHHHHHHH-HCCCEEe-----CCCCHHH--HHHHHHHHHhcCCCC------CCCc
Confidence 99999999995 34433 67888899999999 9999995 2232211 1000 0000000 0111
Q ss_pred ccccCCCcCCCCccCCCcccCCCCccEEeee----cceeE-ecCchhhHHHHHHhhhcC-CCCChhHHHHHHHHHhhcCC
Q psy2393 170 FCECCSSIYTPTKLINPYSILSGTKPIIKSS----KHFFF-KLSDKRCIDFLRKWAIHD-KRLQPEIVNKIKEWLEKDNK 243 (576)
Q Consensus 170 ~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~----~~~f~-~l~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 243 (576)
.|-+ .++++... ...|.+..+|-. ....+ ++ +.. ..++. ..
T Consensus 147 ~cr~----~~~~~~~~---~~~g~~~~~R~k~~~~~~~~~~D~-------------i~G~~~~~~-------------~~ 193 (490)
T 4g6z_A 147 TWRP----EPGKVLPE---PPAGVAPVLRFRNPLTGTVAWDDA-------------VKGRVEISN-------------EE 193 (490)
T ss_dssp TTCC----CTTCCCCC---CCTTCCCEEEECCCCSSEEEEEET-------------TTEEEEEEG-------------GG
T ss_pred cccc----CChhhhhh---hhcCCCceEEEecCCCCcEEEEEe-------------eeeeeeecc-------------cc
Confidence 1210 00000000 000111111100 00000 00 000 00111 24
Q ss_pred CCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEe-eecCcc
Q psy2393 244 FNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFI-GKDIFY 322 (576)
Q Consensus 244 ~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~-G~D~~~ 322 (576)
+.|+.|-|.. |.|. |-.+. .. ++ ....+.||+ |.|++.
T Consensus 194 ~~D~Vl~R~D---G~pt-----------------Y~lA~--vV---------------DD----~~mgIThViRG~D~l~ 232 (490)
T 4g6z_A 194 LDDLVVARPD---GTPM-----------------YNFCV--VV---------------DD----LDMGITHVIRGDDHVN 232 (490)
T ss_dssp CCCCEEECTT---SCBC-----------------HHHHH--HH---------------HH----HHTTCCEEEEEGGGGG
T ss_pred CCCeEEEeeC---CCcc-----------------chhHH--HH---------------HH----HhcCCCEEEecccccc
Confidence 5677777765 4321 21110 00 00 012246777 999973
Q ss_pred hhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhH
Q psy2393 323 FHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSF 401 (576)
Q Consensus 323 fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~ 401 (576)
.+..+..+..++|.+.| .+.|+.+++. +|+||||+.|. +++.++.+.||.|++++-|++..+......-.||.+++
T Consensus 233 -~tprq~~l~~aLG~~~P-~f~HlpLi~~~~g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~el 309 (490)
T 4g6z_A 233 -NTPRQINILRALGGEVP-VYAHLPTVLNEQGEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFTREQF 309 (490)
T ss_dssp -GHHHHHHHHHHTTCCCC-EEEEECCEECTTSSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTSSBCCTTCCCCCHHHH
T ss_pred -ChHHHHHHHHHcCCCCC-eEEEecceeCCCCCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHHhCCCCCCccccCHHHH
Confidence 23344456788999877 4666777776 89999999985 79999999999999999999986433222224676665
Q ss_pred hh
Q psy2393 402 IS 403 (576)
Q Consensus 402 ~~ 403 (576)
.+
T Consensus 310 i~ 311 (490)
T 4g6z_A 310 VE 311 (490)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 32
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=99.63 E-value=9.3e-16 Score=168.98 Aligned_cols=94 Identities=15% Similarity=0.112 Sum_probs=74.6
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|+|||.|||||||++++...++| .+.| .|+..+||.+.+ .-...|.+.|.+
T Consensus 67 v~tRFaPSPtG~LHIGhARtAL~n~l~Ar--~~gG--------~fiLRIEDTD~~-------------R~~~e~~~~Ile 123 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFASLLDFNTAR--QYGG--------QFNLRMDDTNPE-------------LARQEYVDSIAD 123 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHH--HTTC--------EEEEEECCCCTT-------------TCCHHHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCC--------EEEEEECcCCcc-------------cccHHHHHHHHH
Confidence 67777899999999999999999877777 3344 555555555433 114678899999
Q ss_pred HHhhcCcccc-ccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFD-NWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d-~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|++||+.|| ..++.+ +|.+....++.+|. ++|++|.
T Consensus 124 dL~wLGl~wde~~~~qS--er~d~y~e~a~~LI-~~G~AY~ 161 (851)
T 2hz7_A 124 DLKWLGLDWGEHFYYAS--DYFDRYYAYAEQLI-RQGDAYV 161 (851)
T ss_dssp HHHHHTCCCTTCEEEGG--GGHHHHHHHHHHHH-HTTSEEE
T ss_pred HHHHcCCCCCCCcccHh--hhHHHHHHHHHHHH-HCCCcEe
Confidence 9999999995 555544 68889999999999 9999996
No 33
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.63 E-value=8.6e-15 Score=153.99 Aligned_cols=89 Identities=19% Similarity=0.223 Sum_probs=65.2
Q ss_pred eEEEe-eecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCC
Q psy2393 312 QYHFI-GKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNN 389 (576)
Q Consensus 312 ~i~~~-G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~ 389 (576)
+.|++ |.|++. +......+..++|.+.| .+.++.+++. +|+|||||.|+. +++++.+.||.+++||.|++..+..
T Consensus 200 ithvirG~D~~~-~t~~q~~l~~alg~~~p-~~~h~~li~~~~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~~ 276 (468)
T 1j09_A 200 VTDVIRAEEWLV-STPIHVLLYRAFGWEAP-RFYHMPLLRNPDKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMGFS 276 (468)
T ss_dssp CCEEEEEGGGGG-GHHHHHHHHHHHTCCCC-EEEEECCCBCTTSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHSCC
T ss_pred CCeEEEChhhhh-hHHHHHHHHHHcCCCCC-eEEEeeeeeCCCCCccccccchh-hHHHHHHCCCCHHHHHHHHHHhccC
Confidence 35666 999974 44444556788898877 4556777666 899999999998 8999999999999999999986433
Q ss_pred CCCC-cccchhhHhh
Q psy2393 390 KIED-IDFNSQSFIS 403 (576)
Q Consensus 390 ~~~d-~~fs~~~~~~ 403 (576)
...+ -.|+.+++.+
T Consensus 277 ~~~~~~~~~~~el~~ 291 (468)
T 1j09_A 277 MPDGREIFTLEEFIQ 291 (468)
T ss_dssp CTTCCSCCCHHHHHH
T ss_pred CcccccCCCHHHHHh
Confidence 2221 3466655543
No 34
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.60 E-value=4.8e-14 Score=148.90 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=74.6
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|.|||.|||||+|++++...++| ...| .-++++-.+|. ......+.+.|.+
T Consensus 7 vr~RFAPsPTG~LHiG~~rtAL~n~l~Ar--~~gG-----~fiLRieDtD~----------------~R~~~~~~~~I~~ 63 (498)
T 2ja2_A 7 VRVRFCPSPTGTPHVGLVRTALFNWAYAR--HTGG-----TFVFRIEDTDA----------------QRDSEESYLALLD 63 (498)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH--HHTC-----EEEECBCCCCT----------------TTCCHHHHHHHHH
T ss_pred eeEEECcCCCCCccHHHHHHHHHHHHHHH--HcCC-----EEEEEECcCCC----------------cccChHHHHHHHH
Confidence 55666899999999999999999999999 5667 65666655432 1233567789999
Q ss_pred HHhhcCccccc---------cccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDN---------WYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~---------~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|+++|++||- .++.+ ++.+..+++..+|. ++|.+|.
T Consensus 64 ~L~wlGl~wDegp~~gG~~~~~~QS--~r~~~y~~~~~~L~-~~g~aY~ 109 (498)
T 2ja2_A 64 ALRWLGLDWDEGPEVGGPYGPYRQS--QRAEIYRDVLARLL-AAGEAYH 109 (498)
T ss_dssp HHHHHTCCCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHH-HTTSEEE
T ss_pred HHHHcCCCcCCCcCcCCCCCCeeee--cCHHHHHHHHHHHH-HcCCeEE
Confidence 99999999986 44433 67788889999999 9999996
No 35
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.52 E-value=1.4e-14 Score=143.84 Aligned_cols=94 Identities=15% Similarity=0.224 Sum_probs=72.3
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|+|||+|||||+|+++....++| + +.+.|+.-+||.+.+ .-.+.+.+.|.+
T Consensus 6 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar-----~-----~~g~~ilRieDtD~~-------------R~~~~~~~~I~~ 62 (298)
T 1nzj_A 6 YIGRFAPSPSGELHFGSLIAALGSYLQAR-----A-----RQGRWLVRIEDIDPP-------------REVPGAAETILR 62 (298)
T ss_dssp CEEEECCCTTSCCCHHHHHHHHHHHHHHH-----H-----TTCEEEEEECCSCGG-------------GSCTTHHHHHHH
T ss_pred eEEEECcCCCCCccHHHHHHHHHHHHHHH-----h-----cCCeEEEEEecCCch-------------hhHHHHHHHHHH
Confidence 56677899999999999999986666665 3 445566556665543 112567899999
Q ss_pred HHhhcCccccc-cccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDN-WYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~-~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|++|||+||. .++.+ ++.+..++++.+|. ++|++|.
T Consensus 63 dL~~LGl~~D~~~~~qS--er~~~y~~~~~~L~-~~G~aY~ 100 (298)
T 1nzj_A 63 QLEHYGLHWDGDVLWQS--QRHDAYREALAWLH-EQGLSYY 100 (298)
T ss_dssp HHHHTTCCCSSCCEEGG--GCHHHHHHHHHHHH-HTTCEEE
T ss_pred HHHHcCCCCCCCCeeee--CCHHHHHHHHHHHH-HcCCccc
Confidence 99999999985 44444 57788899999999 9999996
No 36
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=99.45 E-value=5e-13 Score=142.93 Aligned_cols=90 Identities=14% Similarity=0.089 Sum_probs=66.8
Q ss_pred ceEEEe-eecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCC
Q psy2393 311 EQYHFI-GKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLN 388 (576)
Q Consensus 311 ~~i~~~-G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~ 388 (576)
.+.||+ |.|++. .+..+..+..++|.+.|. +.|+.+++. +|+|+||+.| ..+++++.+.||-|++|.-|++.-+.
T Consensus 229 gITHViRG~D~l~-sTp~q~~l~~alg~~~P~-y~H~pli~~~~g~kLSKR~~-~~~v~~~~~~G~lPeAl~NyLalLGw 305 (512)
T 4gri_A 229 KITHVLRAQEWVS-SGPLHVLLYKAFKWKPPI-YCHLPMVMGNDGQKLSKRHG-STALRQFIEDGYLPEAIINYVTLLGW 305 (512)
T ss_dssp TCSEEEEEGGGGG-GHHHHHHHHHHHTCCCCE-EEEECCCBCTTSSBCCTTTS-CCBHHHHHHHTCCHHHHHHHHHHSSB
T ss_pred CCceecccccccc-ccHHHHHHHHHcCCCCCe-EEecchhccccccccCcccc-cccHHHHHHcCCChHHHHHHHHHhCC
Confidence 457887 999973 233334467788988774 778888888 8999999988 57899999999999999999988643
Q ss_pred CCCC-CcccchhhHhh
Q psy2393 389 NKIE-DIDFNSQSFIS 403 (576)
Q Consensus 389 ~~~~-d~~fs~~~~~~ 403 (576)
.... .--||.+++.+
T Consensus 306 s~~~~~Eifs~~eli~ 321 (512)
T 4gri_A 306 SYDDKREFFSKNDLEQ 321 (512)
T ss_dssp CSSSSCCCCCHHHHHH
T ss_pred CCcccchhhhHHHHHH
Confidence 3212 12577776654
No 37
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=98.30 E-value=6.3e-06 Score=82.96 Aligned_cols=66 Identities=23% Similarity=0.075 Sum_probs=47.2
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASK 386 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~ 386 (576)
+.+.|.||.. |..+-.-+....+.+.| ..+++.++.. +|+|||||.||+|++.| +++++|..+.+.
T Consensus 173 ~v~~G~DQ~~-~~~l~rdla~~~~~~~p-~~l~~pll~~l~G~KMSKS~~n~I~l~d------~p~~i~~Ki~~a 239 (323)
T 2cyb_A 173 LAVGGIDQRK-IHMLARENLPRLGYSSP-VCLHTPILVGLDGQKMSSSKGNYISVRD------PPEEVERKIRKA 239 (323)
T ss_dssp EEEEEGGGHH-HHHHHHHHGGGGTCCCC-EEEEECCCBCTTSSBCCTTTTCSCBTTC------CHHHHHHHHHTS
T ss_pred EEEechhhHH-HHHHHHHHHHhcCCCCc-eEEecCcccCCCCCcccCCcCceeCCCC------CHHHHHHHHHhc
Confidence 6678999974 43332223344555543 4667777755 99999999999999886 478999998874
No 38
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=97.99 E-value=2e-05 Score=80.62 Aligned_cols=65 Identities=22% Similarity=0.121 Sum_probs=33.4
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCC-ccChhHHhhcCCChhHHHHHHHh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKI-GISPLYYLKIGMNPEWLRYYIAS 385 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn-~i~~~dll~~g~g~d~lR~~l~~ 385 (576)
+.++|.||.. |..+-.-+....++..|. .+++.++.. +|+|||||.+| .|++.| +++.++=.+.+
T Consensus 181 ~v~~G~DQ~~-~~~l~rdl~~r~~~~~p~-~l~~pll~gldG~KMSKS~~ns~I~L~d------~p~~i~kKi~~ 247 (372)
T 1n3l_A 181 AQFGGIDQRK-IFTFAEKYLPALGYSKRV-HLMNPMVPGLTGSKMSSSEEESKIDLLD------RKEDVKKKLKK 247 (372)
T ss_dssp EEEEEGGGHH-HHHHHHHHGGGGTCCCCE-EEEECCCCCSSCC-------CCSCBTTC------CHHHHHHHHHT
T ss_pred EEEcChhHHH-HHHHHHHHHHHcCCCCCE-EEecCccCCCCcccccCCCCCCeEeccC------CHHHHHHHHHH
Confidence 6678999963 333322234445665554 445555555 89999999999 687754 24555555443
No 39
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=97.96 E-value=0.00049 Score=69.65 Aligned_cols=66 Identities=15% Similarity=0.018 Sum_probs=41.1
Q ss_pred EEEeeecCcchhHhHHH----HHHHhcC--CCCCcEEee-eccEEe-CCc-cccccCCCccChhHHhhcCCChhHHHHHH
Q psy2393 313 YHFIGKDIFYFHILFWP----AILKFSG--RKLPNNIFV-HGFMTI-NGK-KMSKSNKIGISPLYYLKIGMNPEWLRYYI 383 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~----a~l~~~~--~~~p~~~~~-~g~v~~-~g~-KMSKS~gn~i~~~dll~~g~g~d~lR~~l 383 (576)
+..+|.||.. |..+-. .+-...| ++.|..++. +.++.. +|+ |||||.+|.|++.| +++.++=.+
T Consensus 165 ~vpvG~DQ~~-hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d------~p~~i~~Ki 237 (351)
T 1yi8_B 165 LVPVGDDQLP-MLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGD------SADEVARKV 237 (351)
T ss_dssp EEEECGGGHH-HHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTC------CHHHHHHHH
T ss_pred EEEecCCcHH-HHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCCccccCCCCCCeecCCC------CHHHHHHHH
Confidence 7788999974 322211 1112234 456666554 444444 887 99999999988765 356677666
Q ss_pred Hh
Q psy2393 384 AS 385 (576)
Q Consensus 384 ~~ 385 (576)
.+
T Consensus 238 ~~ 239 (351)
T 1yi8_B 238 MG 239 (351)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 40
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=97.92 E-value=1.1e-05 Score=80.72 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=41.6
Q ss_pred CCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q psy2393 22 YANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYI 101 (576)
Q Consensus 22 ~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 101 (576)
-|||.|||||..+.+.. +.++++ | +++.+..+ |.|+.-. ..+++++ +++.....+++...|+
T Consensus 11 ~PTg~lHlG~~lg~l~~--~~~lQ~--g-----~~~~~~ia-D~ha~~~-------~~~~~~l-~~~~~~~~~~~lA~Gl 72 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQ--MVDAQE--K-----SQMFMFIA-NYHAMTS-------SQDGEKL-KQNSLKAAAAFLSLGI 72 (322)
T ss_dssp CCSSCCBHHHHHHTHHH--HHHTTT--T-----SCCEEEEC-HHHHTTT-------CCCHHHH-HHHHHHHHHHHHHTTC
T ss_pred CCCccccHHHHHHHHHH--HHHHhc--C-----CCEEEEEe-cCeeecC-------CCCHHHH-HHHHHHHHHHHHHcCC
Confidence 56689999999876543 444444 8 98877665 4444321 1244443 4455567777778999
Q ss_pred ccc
Q psy2393 102 KFD 104 (576)
Q Consensus 102 ~~d 104 (576)
+++
T Consensus 73 dp~ 75 (322)
T 3tzl_A 73 DPQ 75 (322)
T ss_dssp CTT
T ss_pred Ccc
Confidence 886
No 41
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=97.87 E-value=4e-05 Score=79.05 Aligned_cols=54 Identities=24% Similarity=0.148 Sum_probs=26.6
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-C-CccccccCCCc-cChhH
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-N-GKKMSKSNKIG-ISPLY 368 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~-g~KMSKS~gn~-i~~~d 368 (576)
+.+.|.||.. |...-.-+....+++.| ..+++.++.. + |+|||||.+|. |++.|
T Consensus 185 ~v~~G~DQ~~-~~~l~rdl~~r~~~~~p-~~l~~pll~gl~~G~KMSKS~~ns~I~L~D 241 (394)
T 2dlc_X 185 CQFGGVDQRK-IFVLAEENLPSLGYKKR-AHLMNPMVPGLAQGGKMSASDPNSKIDLLE 241 (394)
T ss_dssp EEEEEGGGHH-HHHHHHHHGGGGTCCCC-EEEEECCCCCCC----------CCSCBTTC
T ss_pred EEecCccHHH-HHHHHHHHHHHcCCCCC-EEEecccccCCCCCCcCCCCCCCCEEeccC
Confidence 6677999963 33332334455666654 4455566554 7 99999999996 87755
No 42
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=97.85 E-value=0.00015 Score=73.19 Aligned_cols=67 Identities=25% Similarity=0.179 Sum_probs=42.9
Q ss_pred EEEeeecCcchhHhHHHHHHH----hcC--CCCCcEEee-eccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHH
Q psy2393 313 YHFIGKDIFYFHILFWPAILK----FSG--RKLPNNIFV-HGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIA 384 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~----~~~--~~~p~~~~~-~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~ 384 (576)
+..+|.||.. |..+-.-+.. ..| ++.|..++. +.++.. +|+|||||.+|.|++.| +++.++=.+.
T Consensus 156 ~vpvG~DQ~~-hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG~KMSKS~~n~I~L~d------sp~~i~~Ki~ 228 (340)
T 2g36_A 156 GVPVGEDQVY-HIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGRKMSKSYGNIINLEI------SEKELEQTIL 228 (340)
T ss_dssp EEEECGGGHH-HHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTSSCCCGGGTCCCBTTC------CHHHHHHHHH
T ss_pred EEEcccchHH-HHHHHHHHHHHhhhhcccccCCchhhhccccccCCCCccccCCCCCCeEeeeC------CHHHHHHHHH
Confidence 7788999974 3222111111 223 355665554 444444 89999999999998877 5677777777
Q ss_pred hh
Q psy2393 385 SK 386 (576)
Q Consensus 385 ~~ 386 (576)
+.
T Consensus 229 ~a 230 (340)
T 2g36_A 229 RM 230 (340)
T ss_dssp TC
T ss_pred hC
Confidence 64
No 43
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=97.76 E-value=0.00025 Score=72.44 Aligned_cols=79 Identities=18% Similarity=0.151 Sum_probs=46.8
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 89 (576)
.++++.|++|. -|+|+|||||..+. ..+.++++..| ..+.++.+ |.+ +......+++++. ++.
T Consensus 79 ~~~~~~vysG~-~PTG~lHLGh~v~~---~~~~~lQ~~~g-----~~v~i~I~-D~~------a~~~r~~~~e~i~-~~~ 141 (386)
T 3hzr_A 79 AKKPTFIFIQK-YPQKEVALEEYITL---EFARYLQDAFN-----IQVIIQIL-DDI------KVLNREATINEAS-KMS 141 (386)
T ss_dssp TTCCEEEEEEE-CCCSSCBGGGHHHH---HHHHHHHHHHC-----CEEEEEEC-HHH------HHHTTSCCHHHHH-HHH
T ss_pred cCCCeEEEecc-CCCCCccHHHHHHH---HHHHHHHHhcC-----CeEEEEeC-chH------HhhcCCCCHHHHH-HHH
Confidence 34566666544 77799999997664 23333444457 77777632 211 1111226676554 444
Q ss_pred HHHHHHHhhcCccccc
Q psy2393 90 SNRKKYLDGFYIKFDN 105 (576)
Q Consensus 90 ~~~~~~l~~lgi~~d~ 105 (576)
..+.+++-++|++++.
T Consensus 142 ~~~~~~~lA~GlDp~k 157 (386)
T 3hzr_A 142 NDLMKYILAFGFNEDK 157 (386)
T ss_dssp HHHHHHHHHTCCCGGG
T ss_pred HHHHHHHHHcCCCCcc
Confidence 4677778889998763
No 44
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=97.66 E-value=0.00024 Score=72.64 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=48.3
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHh-hcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQC-MQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~-~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~ 88 (576)
.++++.|++|. -|+|.+||||..+.+. .|++. ..| +++.+..+ |.|..-. ....+++++ +++
T Consensus 70 ~~~p~~i~sG~-~PTG~lHLGh~v~~~~----~~~lQ~~~g-----~~~~i~Ia-D~ha~~~-----~~~~~~e~i-~~~ 132 (392)
T 3jxe_A 70 EGRGFFLYTGR-GPSGPMHIGHIIPFFA----TKWLQEKFG-----VNLYIQIT-DDEKFLF-----KENLTFDDT-KRW 132 (392)
T ss_dssp TTCCCEEEEEE-CCSSCCBHHHHHHHHH----HHHHHHHHC-----CEEEEEEC-HHHHHHH-----CSSCCHHHH-HHH
T ss_pred cCCCeEEEecc-CCCCchhHHHHHHHHH----HHHHHHhcC-----CceEEEec-chHHhhc-----CCCCCHHHH-HHH
Confidence 34555555443 4559999999887642 23344 379 98888765 5553321 113566544 455
Q ss_pred HHHHHHHHhhcCcccc
Q psy2393 89 SSNRKKYLDGFYIKFD 104 (576)
Q Consensus 89 ~~~~~~~l~~lgi~~d 104 (576)
.....+++.++|++++
T Consensus 133 ~~~~~~~~lA~GlDp~ 148 (392)
T 3jxe_A 133 AYDNILDIIAVGFDPD 148 (392)
T ss_dssp HHHHHHHHHTTCCCTT
T ss_pred HHHHHHHHHHhCcCcc
Confidence 5567777888999886
No 45
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=97.61 E-value=0.0057 Score=62.79 Aligned_cols=79 Identities=13% Similarity=0.096 Sum_probs=47.0
Q ss_pred CCCeEEEEcCCCCCCC-cccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYANG-ELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG-~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~ 88 (576)
.++++.|++|. -|+| .+||||..+. ..+.++++..| ..+.+..+ |.|... . ...+++++ +++
T Consensus 98 ~~~p~~vy~G~-~PTg~~lHLGh~v~~---~~~~~lQ~~~g-----~~~~i~Ia-D~~a~l--~----~~~~~e~i-~~~ 160 (406)
T 3tze_A 98 NNRPFYLYTGR-GPSSKTMHIGHTIPF---LLCKYMQDAFK-----IRLVIQIT-DDEKFL--W----KSMRLEDA-MAY 160 (406)
T ss_dssp TTCCEEEEEEE-CCCSSCCBGGGHHHH---HHHHHHHHHHT-----CCEEEEEC-HHHHHH--H----SSCCHHHH-HHH
T ss_pred cCCCeEEEEee-CCCCCcccHHHHHHH---HHHHHHHHhcC-----CcEEEEee-ChHHHc--C----CCCCHHHH-HHH
Confidence 34666666654 7778 7999997664 23333444447 77666432 333111 1 23566554 455
Q ss_pred HHHHHHHHhhcCccccc
Q psy2393 89 SSNRKKYLDGFYIKFDN 105 (576)
Q Consensus 89 ~~~~~~~l~~lgi~~d~ 105 (576)
...+.+++.++|++++.
T Consensus 161 ~~~~~~~~lA~GlDp~k 177 (406)
T 3tze_A 161 GRENIKDIVTLGFDPKL 177 (406)
T ss_dssp HHHHHHHHHTTTCCGGG
T ss_pred HHHHHHHHHHcCCCccc
Confidence 55777778889998763
No 46
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=97.60 E-value=0.00015 Score=73.08 Aligned_cols=67 Identities=24% Similarity=0.126 Sum_probs=41.6
Q ss_pred EEEeeecCcchhHhHHH----HHHHhcC--CCCCcEEeee--ccEEe-CC-ccccccCCCccChhHHhhcCCChhHHHHH
Q psy2393 313 YHFIGKDIFYFHILFWP----AILKFSG--RKLPNNIFVH--GFMTI-NG-KKMSKSNKIGISPLYYLKIGMNPEWLRYY 382 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~----a~l~~~~--~~~p~~~~~~--g~v~~-~g-~KMSKS~gn~i~~~dll~~g~g~d~lR~~ 382 (576)
+..+|.||.. |..+-. .+-...| ++.|..+++. .++.. +| +|||||.+|.|++.| +++.++=.
T Consensus 144 lvp~G~DQ~~-~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d------~p~~i~~K 216 (337)
T 2el7_A 144 TVPVGEDQVQ-HIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLE------PEESIWQK 216 (337)
T ss_dssp EEECCGGGCH-HHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSS------CHHHHHHH
T ss_pred EEEcccchHH-HHHHHHHHHHHHHhhcCcccCCCeeecccccccccCCCCccccCCCCCCeeeCcC------CHHHHHHH
Confidence 7778999974 322211 1111224 4556555542 34444 89 899999999998866 35677777
Q ss_pred HHhh
Q psy2393 383 IASK 386 (576)
Q Consensus 383 l~~~ 386 (576)
+.+.
T Consensus 217 i~~a 220 (337)
T 2el7_A 217 IQHL 220 (337)
T ss_dssp HHTC
T ss_pred HHhC
Confidence 6664
No 47
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=97.50 E-value=0.00058 Score=70.89 Aligned_cols=78 Identities=14% Similarity=0.186 Sum_probs=47.3
Q ss_pred CCeEEEEcCCCCCC-CcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q psy2393 11 VRRIFVTTALPYAN-GELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (576)
Q Consensus 11 ~~~~~v~~~~P~~n-G~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 89 (576)
++++.|++|. -|+ |.|||||..+.+. +.++++..| +.+.+..| |.|+.-- ....++.. ++++.
T Consensus 100 g~~~~vy~G~-dPTag~LHLGh~v~~~~---l~~lQ~~~g-----~~~i~lI~-D~ta~l~-----~~~~t~e~-i~~~~ 163 (432)
T 2ip1_A 100 GKPFFLYTGR-GPSSDSMHLGHMIPFVF---TKWLQEVFD-----VPLVIELT-DDEKFLF-----KHKLTIND-VKNFA 163 (432)
T ss_dssp TCCCEEEEEE-CCCSSCCBGGGHHHHHH---HHHHHHHHT-----CCEEEEEC-HHHHHHH-----CTTCCHHH-HHHHH
T ss_pred CCCeEEEEee-cCCCCCccHHHHHHHHH---HHHHHHHcC-----CeEEEEEe-cccceeC-----CCCCCHHH-HHHHH
Confidence 3455555544 666 8999999886542 334444479 98777766 3333210 01255544 45555
Q ss_pred HHHHHHHhhcCcccc
Q psy2393 90 SNRKKYLDGFYIKFD 104 (576)
Q Consensus 90 ~~~~~~l~~lgi~~d 104 (576)
..+.+++..+|++++
T Consensus 164 ~~~~~~~lA~GlDp~ 178 (432)
T 2ip1_A 164 RENAKDIIAVGFDPK 178 (432)
T ss_dssp HHHHHHHHTTTCCGG
T ss_pred HHHHHHHHHhCCCCC
Confidence 566777888898876
No 48
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=97.48 E-value=0.00098 Score=68.26 Aligned_cols=79 Identities=13% Similarity=0.063 Sum_probs=47.3
Q ss_pred CCCeEEEEcCCCCCC-CcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc-CCCHHHHHHH
Q psy2393 10 DVRRIFVTTALPYAN-GELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA-GMTPKEFINN 87 (576)
Q Consensus 10 ~~~~~~v~~~~P~~n-G~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~-g~~~~~~~~~ 87 (576)
.++++.|++|. -|+ |.|||||..+.+ .+.++++..| ..|.+.. |++ .+.... ..+++++ ++
T Consensus 71 ~g~~~~vy~G~-~PTa~~lHlGh~v~~~---~~~~lQ~~~~-----~~v~i~I-----~D~--~~~~~r~~~~~e~i-~~ 133 (393)
T 3hv0_A 71 KGELFYLYTGR-GPSSESLHVGHLVPFL---FTKYLQDTFK-----VPLVIQL-----TDD--EKFIFKSNLTLEET-HN 133 (393)
T ss_dssp TTCCCEEEEEE-CCSSSSCBSTTHHHHH---HHHHHHHHHC-----CCEEEEE-----CHH--HHHHHCTTCCHHHH-HH
T ss_pred cCCCeEEEeCC-CCCCCCccHHHHHHHH---HHHHHHHhcC-----CCeEeec-----cCh--HHHhhccCCCHHHH-HH
Confidence 34455666544 667 689999966554 3444555557 6666633 333 122222 5666554 55
Q ss_pred HHHHHHHHHhhcCccccc
Q psy2393 88 ISSNRKKYLDGFYIKFDN 105 (576)
Q Consensus 88 ~~~~~~~~l~~lgi~~d~ 105 (576)
+...+.+++.++|++++.
T Consensus 134 ~~~~~~~~~lA~GlDp~k 151 (393)
T 3hv0_A 134 YAYENMKDIIACGFDPEL 151 (393)
T ss_dssp HHHHHHHHHHTTCCCTTT
T ss_pred HHHHHHHHHHHcCCCCcc
Confidence 555677788889998763
No 49
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=97.45 E-value=0.00064 Score=70.50 Aligned_cols=78 Identities=12% Similarity=0.144 Sum_probs=47.5
Q ss_pred CCCeEEEEcCCCCCC-CcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYAN-GELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (576)
Q Consensus 10 ~~~~~~v~~~~P~~n-G~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~ 88 (576)
.++++.|++|. -|| |.|||||..+.+. +.++++..| +++.+..| |.++.-- . ..++++ ++++
T Consensus 105 ~~~~~~vy~G~-dPTag~LHLGh~v~~~~---~~~lQ~~~G-----~~~iilIg-D~ta~ig----d--~lt~e~-i~~n 167 (437)
T 1r6u_A 105 NKKPFYLYTGR-GPSSEAMHVGHLIPFIF---TKWLQDVFN-----VPLVIQMT-DDEKYLW----K--DLTLDQ-AYGD 167 (437)
T ss_dssp TTCCEEEEEEE-CCCSSCCBHHHHHHHHH---HHHHHHHHT-----CCEEEEEC-HHHHHHH----S--SCCHHH-HHHH
T ss_pred cCCCcEEEEcc-cCCCCCccHHHHHHHHH---HHHHHHHhC-----CcEEEEEe-cceeeec----C--CCCHHH-HHHH
Confidence 34566666654 667 8999999887552 334444479 88777665 2332221 0 456655 3444
Q ss_pred HHHHHHHHhhcCcccc
Q psy2393 89 SSNRKKYLDGFYIKFD 104 (576)
Q Consensus 89 ~~~~~~~l~~lgi~~d 104 (576)
...+.+++..+|++++
T Consensus 168 ~~~~~~~~lA~GlDp~ 183 (437)
T 1r6u_A 168 AVENAKDIIACGFDIN 183 (437)
T ss_dssp HHHHHHHHHTTTCCGG
T ss_pred HHHHHHHHHHhCCCcc
Confidence 4556677777888765
No 50
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=97.45 E-value=0.00031 Score=70.44 Aligned_cols=70 Identities=16% Similarity=0.247 Sum_probs=43.2
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+.+.-- |||.|||||..+.+.. +.++ .. | +++.+..+ |.|+.-. ..++++ ++++...+.+
T Consensus 4 vysG~~--PTG~lHlGn~vg~l~~--~~~l-Q~-g-----~~~~~~Ia-D~ha~~~-------~~~~e~-i~~~~~~~~~ 63 (328)
T 1i6k_A 4 IFSGIQ--PSGVITIGNYIGALRQ--FVEL-QH-E-----YNCYFCIV-DQHAITV-------WQDPHE-LRQNIRRLAA 63 (328)
T ss_dssp EEEEEC--CCSCCBHHHHHHTHHH--HHHH-TT-T-----SEEEEEEC-HHHHTTS-------CCCHHH-HHHHHHHHHH
T ss_pred EEEeeC--CCCcccHHHHHHHHHH--HHHH-Hc-C-----CcEEEEEe-CceeecC-------CCCHHH-HHHHHHHHHH
Confidence 444434 4599999999987622 2233 22 8 88876654 3333221 035544 4455567888
Q ss_pred HHhhcCcccc
Q psy2393 95 YLDGFYIKFD 104 (576)
Q Consensus 95 ~l~~lgi~~d 104 (576)
++..+|++++
T Consensus 64 ~~la~Gldp~ 73 (328)
T 1i6k_A 64 LYLAVGIDPT 73 (328)
T ss_dssp HHHHTTCCTT
T ss_pred HHHHhCCChh
Confidence 8899999987
No 51
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=97.36 E-value=0.0016 Score=68.47 Aligned_cols=77 Identities=12% Similarity=0.136 Sum_probs=46.9
Q ss_pred CCeEEEEcCCCCCC-CcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q psy2393 11 VRRIFVTTALPYAN-GELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (576)
Q Consensus 11 ~~~~~v~~~~P~~n-G~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 89 (576)
++++.|++|. -|| |.|||||..+.+. +.++++..| ++|.+..| |.++.-- . ..++++ ++++.
T Consensus 153 ~~~~~vy~G~-dPTag~LHLGh~v~~~~---~~~lQ~~~g-----~~~iilI~-D~~a~ig----d--~lt~e~-i~~n~ 215 (477)
T 1r6t_A 153 KKPFYLYTGR-GPSSEAMHVGHLIPFIF---TKWLQDVFN-----VPLVIQMT-DDEKYLW----K--DLTLDQ-AYGDA 215 (477)
T ss_dssp TCCEEEEEEE-CCCTTCCBGGGHHHHHH---HHHHHHHHT-----CCEEEEEC-HHHHHHH----S--SCCHHH-HHHHH
T ss_pred CCCcEEEEcc-cCCCCCccHHHHHHHHH---HHHHHHHhC-----CcEEEEEe-cceeeec----C--CCCHHH-HHHHH
Confidence 4566666654 667 8999999987652 233444479 88776665 2232221 0 456654 44444
Q ss_pred HHHHHHHhhcCcccc
Q psy2393 90 SNRKKYLDGFYIKFD 104 (576)
Q Consensus 90 ~~~~~~l~~lgi~~d 104 (576)
..+..++..+|++++
T Consensus 216 ~~~~~~~lA~GlDp~ 230 (477)
T 1r6t_A 216 VENAKDIIACGFDIN 230 (477)
T ss_dssp HHHHHHHHTTCCCTT
T ss_pred HHHHHHHHHhCCCCC
Confidence 556667778888775
No 52
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=97.34 E-value=0.00092 Score=68.05 Aligned_cols=69 Identities=12% Similarity=0.104 Sum_probs=41.9
Q ss_pred CCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q psy2393 22 YANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYI 101 (576)
Q Consensus 22 ~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 101 (576)
-|||.+|||| ...+ -.+.+++ ..| +++.+..+ |.|+.- -.+.|.+++++ +++...+.+++..+|+
T Consensus 43 ~PTg~lHlG~-l~~l--~~~~~lQ-~~G-----~~~~~~ia-D~~a~~----~~ps~~~~e~i-~~~~~~~~~~~la~G~ 107 (364)
T 2cya_A 43 EPSGVAHIGW-LVWM--YKVKDLV-EAG-----VDFSVLEA-TWHAYI----NDKLGGDMDLI-RAAARIVRRVMEAAGV 107 (364)
T ss_dssp CCCSSCBTHH-HHHH--HHHHHHH-HTT-----CEEEEEEC-HHHHHH----TTGGGGCHHHH-HHHHHHHHHHHHHTTC
T ss_pred CCCCCccHhH-HHHH--HHHHHHH-HCC-----CCEEEEEe-Ccchhh----CCCCCCCHHHH-HHHHHHHHHHHHHhCC
Confidence 5569999999 4332 2333333 468 88877765 334332 11223455444 4455677889999999
Q ss_pred cccc
Q psy2393 102 KFDN 105 (576)
Q Consensus 102 ~~d~ 105 (576)
+++.
T Consensus 108 dp~k 111 (364)
T 2cya_A 108 PVER 111 (364)
T ss_dssp CGGG
T ss_pred Cccc
Confidence 8874
No 53
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=97.34 E-value=0.0012 Score=67.58 Aligned_cols=78 Identities=8% Similarity=0.078 Sum_probs=47.2
Q ss_pred CCCeEEEEcCCCCCCC-cccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYANG-ELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG-~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~ 88 (576)
.++++.|++|. -|+| .+||||..+. ..+.++++..| ..|.++.| ++- ++.....+++++ +++
T Consensus 75 ~~~~~~vy~G~-~PTg~~lHLGh~v~~---~~~~~lQ~~~~-----~~v~i~I~-----D~~--~~l~~~~~~e~i-~~~ 137 (395)
T 3i05_A 75 SGQPFYLYTGR-GPSSESMHMGHLIPF---MFTKWLQDSFR-----VPLVIQMT-----DDE--KFYFRNIPMEQV-EAM 137 (395)
T ss_dssp TTCCEEEEEEE-CCCSSCCBGGGSHHH---HHHHHHHHHHT-----CCEEEEEC-----HHH--HHHHSCCCHHHH-HHH
T ss_pred cCCCeEEEEee-cCCCccchHHHHHHH---HHHHHHHHhcC-----CcEEEEEc-----chH--HHhcCCCCHHHH-HHH
Confidence 34566666654 7778 7999997654 33444555557 77776632 222 122233666554 445
Q ss_pred HHHHHHHHhhcCcccc
Q psy2393 89 SSNRKKYLDGFYIKFD 104 (576)
Q Consensus 89 ~~~~~~~l~~lgi~~d 104 (576)
...+.+++.++|++++
T Consensus 138 ~~~~~~~~lA~GlDp~ 153 (395)
T 3i05_A 138 TTENIKDIIAMGFDPE 153 (395)
T ss_dssp HHHHHHHHHTTTCCTT
T ss_pred HHHHHHHHHHcCCCCC
Confidence 5577777888898775
No 54
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=97.24 E-value=0.00055 Score=69.22 Aligned_cols=72 Identities=19% Similarity=0.287 Sum_probs=43.1
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 92 (576)
..+.+.-- |||.|||||..+.+..= .+++. | +++.+..+ |.|+.-.. .+++++ +.+..++
T Consensus 5 ~~i~sG~~--PTG~lHLGn~vg~l~~~--~~lQ~--~-----~~~~~~Ia-D~ha~~~~-------~d~~~i-~~~~~~~ 64 (348)
T 2yy5_A 5 KRALTGIQ--ASGKQHLGNYLGVMQSL--IELQE--Q-----CQLFVFVA-DLHSITVD-------FQPQAL-KQNNFDL 64 (348)
T ss_dssp CEEEEEEC--CCTTCBHHHHHHTGGGH--HHHHH--H-----SEEEEEEC-HHHHTTSC-------CCHHHH-HHHHHHH
T ss_pred eEEEEeeC--CCCcccHHHHHHHHHHH--HHHHh--C-----CcEEEEEc-ChhhccCC-------CCHHHH-HHHHHHH
Confidence 34445444 45999999999766222 23333 7 88766554 33332210 345443 4455667
Q ss_pred HHHHhhcCcccc
Q psy2393 93 KKYLDGFYIKFD 104 (576)
Q Consensus 93 ~~~l~~lgi~~d 104 (576)
.+++...|++++
T Consensus 65 ~~~~lA~Gldp~ 76 (348)
T 2yy5_A 65 VRTLLAVGLDPQ 76 (348)
T ss_dssp HHHHHHTTCCTT
T ss_pred HHHHHHhCCChh
Confidence 778888999987
No 55
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=97.06 E-value=0.0028 Score=64.58 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=40.4
Q ss_pred CCCCcccchHhhhHHHHH-HHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcC
Q psy2393 22 YANGELHIGHIMEYIQAD-IWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFY 100 (576)
Q Consensus 22 ~~nG~lHiGH~~~~i~~D-vl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 100 (576)
-|+|.+|||| .++.- .+.++ ...| ++|.+..| |.|+.- -.+.|.++.+ .+.....+.+.+..+|
T Consensus 64 ~PTg~lHlG~---gvl~~~~~~~l-Q~~G-----~~~~~lIa-D~ha~i----~d~~~~~~~~-i~~~~~~~~~~~~a~G 128 (373)
T 3vgj_A 64 EPSGRMHIAQ---GLLKSIIVNKL-TSNG-----CTFIFWIA-DWFAHL----NNKMSGDLKK-IKKVGSYFIEVWKSCG 128 (373)
T ss_dssp CCCSSCBHHH---HHHHHHHHHHH-HTTT-----CEEEEEEC-HHHHHH----TTGGGGCHHH-HHHHHHHHHHHHHHTT
T ss_pred CCCCCceehh---hHHHHHHHHHH-HHCC-----CcEEEEEe-cceeEe----cCCCCCCHHH-HHHHHHHHHHHHHHcC
Confidence 5558999999 22222 24444 4468 99887765 444432 1122334433 3444455667888999
Q ss_pred ccccc
Q psy2393 101 IKFDN 105 (576)
Q Consensus 101 i~~d~ 105 (576)
++++.
T Consensus 129 ~dp~k 133 (373)
T 3vgj_A 129 MNMEN 133 (373)
T ss_dssp CCSTT
T ss_pred CChhh
Confidence 98863
No 56
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=95.37 E-value=0.0091 Score=59.63 Aligned_cols=68 Identities=13% Similarity=0.009 Sum_probs=45.6
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIAS 385 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~ 385 (576)
+.++|.||.. |..+=.-+....+.. +...+++.++.. +|+|||||.+|.|++.| ++ .+++.++=.+.+
T Consensus 194 v~~gG~DQ~~-~i~l~rdla~r~n~~-~~~~l~~pll~gldG~KMSKS~~n~I~L~d--~~-tsp~~~~~ki~~ 262 (322)
T 2yxn_A 194 LCIGGSDQWG-NITSGIDLTRRLHQN-QVFGLTVPLITKADGTKFGKTEGGAVWLDP--KK-TSPYKFYQFWIN 262 (322)
T ss_dssp EEEECTTCHH-HHHHHHHHHHHHHCC-CCEEEECCCCBCTTSCBTTEETTEECBSST--TT-SCHHHHHHHHHT
T ss_pred EEecCchhHH-HHHHHHHHHHHhCCC-CceeeccCccCCCCcccccCCCCCeeeccC--CC-CCHHHHHHHHhC
Confidence 7788999963 322211122223332 345556666655 89999999999999998 66 788888877765
No 57
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=94.72 E-value=0.024 Score=57.32 Aligned_cols=69 Identities=14% Similarity=0.037 Sum_probs=34.8
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASK 386 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~ 386 (576)
+..+|.||.. |..+=.-+....+.. +...+++.++.- +|+|||||.||.|++.| ++ -+++.++=.+.+.
T Consensus 213 i~p~G~DQ~~-~i~l~rdla~r~n~~-~~~~l~~pll~~ldG~KMSKS~~naI~L~d--~~-tsp~~i~~ki~~~ 282 (356)
T 2pid_A 213 VQLGGSDQLG-NIMSGYEFINKLTGE-DVFGITVPLITSTTGAKLGKSAGNAVWLNR--DK-TSPFELYQFFVRQ 282 (356)
T ss_dssp EEEEEGGGHH-HHHHHHHHHHHHSSC-CCEEEEECCCC-------------CCBSST--TT-SCHHHHHHHHHTC
T ss_pred EEeccHHHHH-HHHHHHHHHHHhCCC-CccccccccccCCCcccccCCCCCeeeccC--CC-CCHHHHHHHHHcC
Confidence 7788999963 322211123333433 345556666644 89999999999999988 45 6788888887763
No 58
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=94.51 E-value=0.037 Score=57.17 Aligned_cols=68 Identities=16% Similarity=0.099 Sum_probs=44.5
Q ss_pred EEEeeecCcchhHhHHHHHHHhc-CCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFS-GRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIAS 385 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~-~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~ 385 (576)
+..+|.||.. |..+=.-+.... +.. +...+++.++.- +|+|||||.||.|++.| ++ -+|+.++=++.+
T Consensus 189 i~~gG~DQ~~-ni~~grdla~r~~~~~-~~~~l~~pll~~ldG~KMSKS~~naI~L~d--~~-tsp~~i~~ki~~ 258 (420)
T 1jil_A 189 IQVGGSDQWG-NITSGIELMRRMYGQT-DAYGLTIPLVTKSDGKKFGKSESGAVWLDA--EK-TSPYEFYQFWIN 258 (420)
T ss_dssp EEEEEGGGHH-HHHHHHHHHHHHHCCC-CCEEEEECCCBCTTSCBTTBCSSSBCBSST--TT-SCHHHHHHHHHT
T ss_pred EEeccHHHHH-HHHHHHHHHHHhcCCC-CeeEeecccccCCccccccCCCCCeEecCC--CC-CCHHHHHHHHhc
Confidence 6778999963 322211123333 433 345666666655 99999999999999988 44 667777766665
No 59
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=94.45 E-value=0.033 Score=57.42 Aligned_cols=68 Identities=15% Similarity=0.086 Sum_probs=43.9
Q ss_pred EEEeeecCcchhHhHHHHHHHhc-CCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFS-GRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIAS 385 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~-~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~ 385 (576)
+..+|.||.. |..+=.-+.... +.. +...+++.++.- +|+|||||.||.|++.+ ++ -+|+.++=++.+
T Consensus 188 i~~gG~DQ~~-ni~lgrdlarr~~~~~-~~~~lt~pll~~ldG~KMSKS~~naI~L~d--~~-tsp~~i~qki~~ 257 (419)
T 2ts1_A 188 LQIGGSDQWG-NITAGLELIRKTKGEA-RAFGLTIPLVTKADGTKFGKTESGTIWLDK--EK-TSPYEFYQFWIN 257 (419)
T ss_dssp EEEEEGGGHH-HHHHHHHHHHHHHC---CCEEEEECCCCCTTSCCTTCCSSCCCBSST--TT-SCHHHHHHHHHT
T ss_pred EEeccHHHHH-HHHHHHHHHHHhcCCC-CeeecccccccCCCcccccCCCCCeEecCC--CC-CCHHHHHHHHhc
Confidence 6778999963 322211122333 332 345666666655 99999999999999988 44 677777766665
No 60
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=94.42 E-value=0.035 Score=57.40 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=44.2
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCC-ccChhHHhhcCCChhHHHHHHHh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKI-GISPLYYLKIGMNPEWLRYYIAS 385 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn-~i~~~dll~~g~g~d~lR~~l~~ 385 (576)
+..+|.||.. |..+=.-+....+.. +...+++-++.- +|+|||||.|| .|++.| ++ -+|+.++=++.+
T Consensus 190 i~~gG~DQ~~-ni~lgrdlarr~~~~-~~~~l~~plL~~ldG~KMSKS~~nsaI~L~d--~~-tsp~~i~qki~~ 259 (432)
T 2jan_A 190 LQIGGADQWG-NIIAGVRLVRQKLGA-TVHALTVPLVTAADGTKFGKSTGGGSLWLDP--QM-TSPYAWYQYFVN 259 (432)
T ss_dssp EEEECSTTHH-HHHHHHHHHHHHHCC-CCEEEECCCCBCTTSCBTTBCSSSCBCBSST--TT-SCHHHHHHHHHT
T ss_pred EEeccHHHHH-HHHHHHHHHHHhCCC-CccccccccccCCCcCcCCCCCCCCeEEccC--CC-CCHHHHHHHHhc
Confidence 7788999963 322211122223333 345566666655 99999999999 999987 44 677777777665
No 61
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=93.86 E-value=0.043 Score=56.84 Aligned_cols=65 Identities=25% Similarity=0.267 Sum_probs=42.9
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCc-cccccCCCccChhHHhhcCCChhHHHHHHHh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGK-KMSKSNKIGISPLYYLKIGMNPEWLRYYIAS 385 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~-KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~ 385 (576)
+..+|.||. +|..+=.-+....+.. |...+++.++.- +|. |||||.||.|++.| +++.++=++.+
T Consensus 190 l~~gG~DQ~-~ni~l~rdlarr~~~~-~~~~lt~pll~gldG~~KMSKS~~n~I~L~d------sp~~i~~Ki~~ 256 (432)
T 1h3f_A 190 VEMGGTDQR-FNLLVGREVQRAYGQS-PQVCFLMPLLVGLDGREKMSKSLDNYIGLTE------PPEAMFKKLMR 256 (432)
T ss_dssp EEEEEGGGH-HHHHHHHHHHHHTTCC-CCEEEEECCCBCTTSSSBCCGGGTCCCBTTS------CHHHHHHHHHT
T ss_pred EEEechHHH-HHHHHHHHHHHHhCCC-CceEeecccccCCCCccccCcCCCCeeCCCC------CHHHHHHHHhC
Confidence 778999996 3433222233444543 455667777665 886 99999999999877 45666655554
No 62
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=92.98 E-value=0.14 Score=51.99 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=50.3
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHH
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~ 88 (576)
+.+++++|.+|. -|+|.+||||..+.+ ..+++...| ++|.+.. .|.|-.-. ......+..+..
T Consensus 66 e~gk~~~v~sG~-~PTG~lHLGhyv~~~----~~~~lq~~~-----~~~~~~I-aD~ha~t~------~~~~~~e~~r~~ 128 (372)
T 3a04_A 66 ARGERVAVLTGF-MPSGKFHFGHKLTVD----QLIYLQKNG-----FKVFVAI-ADAEAFAV------RRIGREEAVRIA 128 (372)
T ss_dssp HTTCCCEEEEEE-CCCSCCBHHHHHHHH----HHHHHHHTT-----CEEEEEE-CHHHHHHT------TCCCHHHHHHHH
T ss_pred HcCCCCEEEeCc-CCCcHhHHHHHHHHH----HHHHHHhCC-----CeEEEEE-ecchhhcc------CCCCCHHHHHHH
Confidence 355677777664 678999999987432 234455568 9987654 35553221 122334445566
Q ss_pred HHHHHHHHhhcCcccc
Q psy2393 89 SSNRKKYLDGFYIKFD 104 (576)
Q Consensus 89 ~~~~~~~l~~lgi~~d 104 (576)
..+..+++-++|++++
T Consensus 129 ~~~~~~~~lA~GlDP~ 144 (372)
T 3a04_A 129 VEEYIANMIALGLDPK 144 (372)
T ss_dssp HHTTHHHHHHHTCCTT
T ss_pred HHHHHHHHHHcCCChH
Confidence 6677778889999986
No 63
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=92.02 E-value=0.067 Score=53.14 Aligned_cols=68 Identities=19% Similarity=0.263 Sum_probs=40.4
Q ss_pred CCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q psy2393 22 YANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYI 101 (576)
Q Consensus 22 ~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 101 (576)
-|||+||||| ...+ -.+.++ ...| +++.+..| |.|+.-. . ..++++ ++++...+.+++.++|+
T Consensus 36 ~PTg~lHlGh-l~~l--~~~~~l-Q~~g-----~~~~~~i~-D~~a~~~----~--~~~~e~-i~~~~~~~~~~~~a~G~ 98 (314)
T 2zp1_A 36 EPSGKIHLGH-YLQI--KKMIDL-QNAG-----FDIIILLA-DLAAYLN----Q--KGELDE-IRKIGDYNKKVFEAMGL 98 (314)
T ss_dssp CCCSSCBHHH-HHHH--HHHHHH-HHTT-----EEEEEEEC-HHHHHHT----T--CCCHHH-HHHHHHHHHHHHHHTTC
T ss_pred CCCCCcchhh-HHHH--HHHHHH-HHCC-----CCEEEEEe-cceEecC----C--CCCHHH-HHHHHHHHHHHHHhcCC
Confidence 4468999999 4433 223333 3458 88877664 3333221 1 113443 45566888889999998
Q ss_pred cccccc
Q psy2393 102 KFDNWY 107 (576)
Q Consensus 102 ~~d~~~ 107 (576)
+ ..|+
T Consensus 99 d-~~~~ 103 (314)
T 2zp1_A 99 K-AKYV 103 (314)
T ss_dssp C-CEEE
T ss_pred C-eEEE
Confidence 8 4444
No 64
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=91.54 E-value=0.39 Score=47.57 Aligned_cols=50 Identities=18% Similarity=-0.046 Sum_probs=31.8
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CC-ccccccCCCccChhH
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NG-KKMSKSNKIGISPLY 368 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g-~KMSKS~gn~i~~~d 368 (576)
+.++|.||... ..+ ......+ +..++++.++.. +| +|||||.||.|++.|
T Consensus 166 ~v~~G~DQ~~~-~~l----~R~i~~~-~~~~~~~~~l~~l~G~~KMSKS~~~~I~L~d 217 (314)
T 2zp1_A 166 VAVGGMEQRKI-HML----ARELLPK-KVVCIHNPVLTGLDGEGKMSSSKGNFIAVDD 217 (314)
T ss_dssp EEEEEGGGHHH-HHH----HHHHSSS-CCEEEEECCCBCTTSSSBCCTTTTCSCBTTC
T ss_pred EEEcChhHHHH-HHH----HHHhcCC-CcEEeeccccccCCcccccCCCCcceecCCC
Confidence 67789999642 211 1112212 234556666665 88 799999999998765
No 65
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=90.83 E-value=0.14 Score=52.41 Aligned_cols=43 Identities=19% Similarity=-0.023 Sum_probs=32.6
Q ss_pred cEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhh
Q psy2393 341 NNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASK 386 (576)
Q Consensus 341 ~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~ 386 (576)
...+++.++.. +|+|||||.||.|++.| +. -+++.++=++.+.
T Consensus 278 ~~~l~~pll~~ldG~KMSKS~~naI~L~d--~~-tsp~~i~qki~~~ 321 (392)
T 1y42_X 278 CVGFTVPLLTDSSGAKFGKSAGNAIWLDP--YQ-TSVFDFYGYFVRR 321 (392)
T ss_dssp CEEEECCCCBCTTCCBTTBCSSSBCBSST--TT-SCHHHHHHHHHTC
T ss_pred ccccccccCcCCchhhccCCCCCeeeccC--CC-CCHHHHHHHHHcC
Confidence 45666677666 99999999999999987 34 5677777776653
No 66
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=90.76 E-value=0.25 Score=50.27 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=44.2
Q ss_pred CeEE----EEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHH
Q psy2393 12 RRIF----VTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINN 87 (576)
Q Consensus 12 ~~~~----v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~ 87 (576)
++++ |++| --|||.+||||..+.+.. +.+ +. .| +++.+..+ |.|..-. ..++.++ +.
T Consensus 30 ~p~~m~~ri~sG-~~PTG~lHLGhyvGal~~--~~~-LQ-~~-----~~~~~~Ia-D~hAlt~-------~~~~~~l-r~ 90 (388)
T 3prh_A 30 DPFTMKQTIFSG-IQPSGSVTLGNYIGAMKQ--FVE-LQ-HD-----YNSYFCIV-DQHAITV-------PQDRLEL-RK 90 (388)
T ss_dssp -----CCEEEEE-ECCCSCCBHHHHHHTHHH--HHH-TT-TT-----SEEEEEEC-HHHHTTS-------CCCHHHH-HH
T ss_pred CCcccCCeEEEe-eCCCCcchHHHHHHHHHH--HHH-HH-cc-----CcEEEEEe-cceeeec-------CCCHHHH-HH
Confidence 5665 4543 367799999998876542 112 22 38 88877653 5454331 2456544 45
Q ss_pred HHHHHHHHHhhcCcccc
Q psy2393 88 ISSNRKKYLDGFYIKFD 104 (576)
Q Consensus 88 ~~~~~~~~l~~lgi~~d 104 (576)
...+...++...|++++
T Consensus 91 ~~~~~aa~~lA~GlDp~ 107 (388)
T 3prh_A 91 NIRNLAALYLAVGLDPE 107 (388)
T ss_dssp HHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHhCCChh
Confidence 55677788888999987
No 67
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=90.53 E-value=0.76 Score=47.52 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=47.8
Q ss_pred CCCeEEEEcCCCCCC-CcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYAN-GELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (576)
Q Consensus 10 ~~~~~~v~~~~P~~n-G~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~ 88 (576)
.++++.|++|. -|| |.|||||..+.+ .+.++++..| ..+.+. .|++ .....+...+++++ +++
T Consensus 88 ~g~p~~vytG~-dPTagsLHLGH~v~~~---~l~~lQ~~~g-----~~v~I~-----IgD~-~a~~~r~~lt~E~I-~~n 151 (451)
T 3foc_A 88 KGHPIYIYTGR-GPSSGALHLGHLLPFI---FTKYLQDAFK-----CYVVIQ-----ITDD-EKFLRNRSLSYAEV-DSY 151 (451)
T ss_dssp TTCCEEEEEEE-CCCSSCCBHHHHHHHH---HHHHHHHHHT-----CEEEEE-----ECHH-HHHHHCTTCCHHHH-HHH
T ss_pred cCCCeEEEecC-CCCCCCccHHHHHHHH---HHHHHHHccC-----ceEEEE-----eeCc-HHhhcccCCCHHHH-HHH
Confidence 34566666655 677 899999966543 3334444447 666664 3343 11112225677554 555
Q ss_pred HHHHHHHHhhcCcccc
Q psy2393 89 SSNRKKYLDGFYIKFD 104 (576)
Q Consensus 89 ~~~~~~~l~~lgi~~d 104 (576)
...+.+++.++|++++
T Consensus 152 ~~~~~~~~lA~GlDpe 167 (451)
T 3foc_A 152 TRENIKDIIACGFDPD 167 (451)
T ss_dssp HHHHHHHHHTTTCCGG
T ss_pred HHHHHHHHHHcCCCCC
Confidence 5577778888999876
No 68
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=88.33 E-value=0.23 Score=50.01 Aligned_cols=77 Identities=13% Similarity=0.009 Sum_probs=43.5
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
+..+.+.- -|+|.|||||... .--.+.+++ ..| +++.+..| |.|+.- ..+.|.++++ +++....
T Consensus 40 ~~~vy~G~--~PTg~lHlGhyl~--~l~~~~~lQ-~~G-----~~~~~~i~-D~~a~~----~~~~~~~~e~-i~~~~~~ 103 (348)
T 2j5b_A 40 IFTAYNGF--EPSGRIHIAQALI--TVMNTNNMI-ECG-----GQMIIYIA-DWFAKM----NLKMNGDINK-IRELGRY 103 (348)
T ss_dssp CEEEEEEE--CCCSSCBHHHHHH--HHHHHHHHH-HTT-----EEEEEEEC-HHHHHH----TTGGGGCHHH-HHHHHHH
T ss_pred CCEEEecc--CCCCCCchhHHHH--HHHHHHHHH-HcC-----CcEEEEec-cchhhh----CCCCCCCHHH-HHHHHHH
Confidence 33344443 4559999999322 222334444 458 98877664 333322 1122345544 4555566
Q ss_pred HHHHHhhcCcccc
Q psy2393 92 RKKYLDGFYIKFD 104 (576)
Q Consensus 92 ~~~~l~~lgi~~d 104 (576)
+.+++..+|++++
T Consensus 104 ~~~~~la~Gldp~ 116 (348)
T 2j5b_A 104 FIEVFKACGINLD 116 (348)
T ss_dssp HHHHHHHTTCCGG
T ss_pred HHHHHHHhcCCcc
Confidence 7777888999876
No 69
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=87.51 E-value=0.52 Score=47.14 Aligned_cols=65 Identities=15% Similarity=0.295 Sum_probs=41.9
Q ss_pred CCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q psy2393 22 YANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYI 101 (576)
Q Consensus 22 ~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 101 (576)
-|+|.+||||..+.+.. +.+++. + +++.+..+ |.|..-. ..+++ .++++.....+++...|+
T Consensus 14 ~PTG~lHLGhy~g~l~~--~~~lQ~--~-----~~~~~~ia-D~ha~~~-------~~~~~-~~~~~~~~~~~~~lA~Gl 75 (341)
T 3sz3_A 14 QPSGELSIGNYLGALRQ--WQQMQD--D-----YDCQYCVV-DLHAITV-------RQDPQ-ALHEATLDALAICLAVGV 75 (341)
T ss_dssp CSSSCCBHHHHHHTGGG--HHHHHH--H-----SEEEEEEC-HHHHTTS-------CCCHH-HHHHHHHHHHHHHHHTTC
T ss_pred CCCCcccHHHHHHHHHH--HHHHHh--c-----CeEEEEEe-cceeEcC-------CCCHH-HHHHHHHHHHHHHHHcCC
Confidence 55699999999876632 233333 6 77766543 5454321 24564 445556678888889999
Q ss_pred ccc
Q psy2393 102 KFD 104 (576)
Q Consensus 102 ~~d 104 (576)
+++
T Consensus 76 Dp~ 78 (341)
T 3sz3_A 76 DPK 78 (341)
T ss_dssp CTT
T ss_pred Chh
Confidence 987
No 70
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=86.80 E-value=0.32 Score=50.31 Aligned_cols=52 Identities=17% Similarity=0.059 Sum_probs=30.6
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCc--cccccCCC-ccCh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGK--KMSKSNKI-GISP 366 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~--KMSKS~gn-~i~~ 366 (576)
+-.+|.||.+ |..+---+....+.+.|. ++++.++.. +|. |||||.+| .|.+
T Consensus 290 ~VPvG~DQ~~-hlel~Rdia~rfn~~~p~-~~~~~~l~gLdG~~~KMSKS~~ns~I~l 345 (451)
T 3foc_A 290 LIASGIEQDP-YFRLARDLAPRMGHPKNA-YLLGKFLPGLQGSGTKMSASDPNSAIYL 345 (451)
T ss_dssp EEEECTTTHH-HHHHHHHHTTTTTSCCCE-EEEECCCCBTTBTTCCCCTTCGGGSCBT
T ss_pred eeeeecchHH-HHHHHHHHHHHhCCCCCe-eecCCcccCCCCCCCccCCCCCCCeeee
Confidence 4456999974 322211123334555444 455665555 664 99999987 5655
No 71
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=86.43 E-value=1.2 Score=45.27 Aligned_cols=55 Identities=25% Similarity=0.114 Sum_probs=28.8
Q ss_pred EEEeeecCcchhHhHHH--H--HHHhcC--CCCCcEEeee--ccEE-e-CC-ccccccC---CCccChhH
Q psy2393 313 YHFIGKDIFYFHILFWP--A--ILKFSG--RKLPNNIFVH--GFMT-I-NG-KKMSKSN---KIGISPLY 368 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~--a--~l~~~~--~~~p~~~~~~--g~v~-~-~g-~KMSKS~---gn~i~~~d 368 (576)
+..+|.||...+ .+-- | +-...| +..|..++.- .++. + +| +|||||. +|.|.+.|
T Consensus 174 ~vPvG~DQ~~hl-eltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D 242 (388)
T 3prh_A 174 LVPPGEDQKQHL-ELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLD 242 (388)
T ss_dssp EECCCSSCHHHH-HHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTC
T ss_pred EEEechhHHHHH-HHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCC
Confidence 667899997432 2111 1 111122 2344444421 1222 2 44 6999999 89997754
No 72
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=86.29 E-value=1.8 Score=43.31 Aligned_cols=54 Identities=24% Similarity=0.113 Sum_probs=32.8
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe--CC-ccccccC-CCccChhH
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI--NG-KKMSKSN-KIGISPLY 368 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~--~g-~KMSKS~-gn~i~~~d 368 (576)
+..+|.||.. |..+-.-+....+...|. ++++.++.. +| +|||||. +|.|++.|
T Consensus 189 ~~~~G~DQ~~-~i~l~Rdia~r~~~~~p~-~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d 246 (348)
T 2j5b_A 189 ICQLGIDQRK-VNMLAIEYANDRGLKIPI-SLSHHMLMSLSGPKKKMSKSDPQGAIFMDD 246 (348)
T ss_dssp EECCBGGGHH-HHHHHHHHHHHTTCCCCE-EEEBCCCCCTTCSSCCCSTTCGGGSCBTTC
T ss_pred EEEeccChHH-HHHHHHHHHHHhCCCCce-eecCccccCCCCcccccccCCCCCeEeecC
Confidence 6678999963 322211133445555553 455555555 46 6999999 68887754
No 73
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=85.98 E-value=0.36 Score=49.01 Aligned_cols=70 Identities=16% Similarity=0.059 Sum_probs=39.1
Q ss_pred CCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHH---H-HHHHHHHHHHHh
Q psy2393 22 YANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEF---I-NNISSNRKKYLD 97 (576)
Q Consensus 22 ~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~---~-~~~~~~~~~~l~ 97 (576)
-|||.+||||....+ -.+.+++ ..| +++.+..| |.|+.- -.+.|.+++++ + ..+...+.+++.
T Consensus 41 ~PTg~lHlG~yl~~l--~~~~~lQ-~~G-----~~~~~~ia-D~ha~~----~~~~g~~~e~i~~~~~~~~~~~~~~~~l 107 (375)
T 2cyc_A 41 EISGYIHLGTGLMAG--AKIADFQ-KAG-----IKTRVFLA-DWHSWI----NDKLGGDLEVIQEVALKYFKVGMEKSIE 107 (375)
T ss_dssp CCCSCCBHHHHHHHH--HHHHHHH-HTT-----CBCEEEEC-HHHHHH----TTGGGGCHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCCCcCchHHHHHH--HHHHHHH-HCC-----CcEEEEec-CcEEEc----CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 555899999944322 2233444 468 88877664 333222 12223344433 2 333344448889
Q ss_pred hcCcccc
Q psy2393 98 GFYIKFD 104 (576)
Q Consensus 98 ~lgi~~d 104 (576)
.+|++++
T Consensus 108 a~G~dp~ 114 (375)
T 2cyc_A 108 VMGGDPK 114 (375)
T ss_dssp HTTCCGG
T ss_pred HhCCCcc
Confidence 9999876
No 74
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=85.92 E-value=1.1 Score=49.17 Aligned_cols=76 Identities=16% Similarity=0.103 Sum_probs=43.1
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHH-HHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADI-WVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dv-l~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
++.|++| --|||.||||| .++.-+ +.+++ ..| ++|.+..| |-|+.-. .+.+.++++ ++.+...
T Consensus 40 ~~~vy~G-~~PTg~lHLG~---~v~~~~~~~~lQ-~~G-----~~~~~lIa-D~ha~~~----d~~~~~~e~-i~~~~~~ 103 (690)
T 3p0j_A 40 LIRCYDG-FEPSGRMHIAQ---GIFKAVNVNKCT-AAG-----CEFVFWVA-DWFALMN----DKVGGELEK-IRIVGRY 103 (690)
T ss_dssp TEEEEEE-ECCCSCCBHHH---HHHHHHHHHHHH-HTT-----EEEEEEEC-CGGGGGG----CTTTTHHHH-HHHHHHH
T ss_pred CceEEee-ecCCCcchhHh---hHHHHHHHHHHH-HCC-----CcEEEEEe-eeEEEec----CCCcchHHH-HHHHHHH
Confidence 3444443 36668999999 333222 34444 468 98877665 5554321 012233333 3444456
Q ss_pred HHHHHhhcCcccc
Q psy2393 92 RKKYLDGFYIKFD 104 (576)
Q Consensus 92 ~~~~l~~lgi~~d 104 (576)
+.+++..+|++++
T Consensus 104 ~~~~~lA~GlDp~ 116 (690)
T 3p0j_A 104 LIEVWKAAGMDMD 116 (690)
T ss_dssp HHHHHHHTTCCGG
T ss_pred HHHHHHHcCCChH
Confidence 6777888999876
No 75
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=85.13 E-value=1.7 Score=43.43 Aligned_cols=71 Identities=18% Similarity=0.241 Sum_probs=43.1
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhh-cCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCM-QQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~-~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
+.+.+.- -|+|.+||||..+.+ ..+.++ .+ +++.+..+ |.|..-. ..+++ .+++....
T Consensus 16 ~~i~sG~--~PTG~lHLGh~vg~l-----~~~~~lQ~~-----~~~~~~ia-D~hA~t~-------~~~~~-~~~~~~~~ 74 (346)
T 3n9i_A 16 PIVFSGA--QPSGELTIGNYMGAL-----RQWVQMQDD-----YDCIYCIV-DLHAITA-------RQDPA-LLRKRTLD 74 (346)
T ss_dssp CEEEEEE--CSCSCCBHHHHHHTH-----HHHHTTTTT-----SEEEEEEC-HHHHTTS-------CCCHH-HHHHHHHH
T ss_pred CEEEECc--CCCCcccHHHHHHHH-----HHHHHHHhh-----CcEEEEEe-cceeecC-------CCCHH-HHHHHHHH
Confidence 3444443 556999999988765 223222 36 77766543 5454321 23453 44555667
Q ss_pred HHHHHhhcCcccc
Q psy2393 92 RKKYLDGFYIKFD 104 (576)
Q Consensus 92 ~~~~l~~lgi~~d 104 (576)
..+++...|++++
T Consensus 75 ~~~~~lA~GlDp~ 87 (346)
T 3n9i_A 75 TLALYLACGIDPK 87 (346)
T ss_dssp HHHHHHHHTCCTT
T ss_pred HHHHHHHcCCCcc
Confidence 7788888999887
No 76
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=85.10 E-value=1.6 Score=43.52 Aligned_cols=67 Identities=24% Similarity=0.131 Sum_probs=35.1
Q ss_pred EEEeeecCcchhHhH-HHH--HHHhcC-----CCCCcEEee--eccEEe--CC-ccccccC---CCccChhHHhhcCCCh
Q psy2393 313 YHFIGKDIFYFHILF-WPA--ILKFSG-----RKLPNNIFV--HGFMTI--NG-KKMSKSN---KIGISPLYYLKIGMNP 376 (576)
Q Consensus 313 i~~~G~D~~~fh~~~-~~a--~l~~~~-----~~~p~~~~~--~g~v~~--~g-~KMSKS~---gn~i~~~dll~~g~g~ 376 (576)
+..+|.||...+-.- -.+ +-...| +..|..+++ +.++.. +| +|||||. +|.|.+.| ++
T Consensus 146 ~vpvG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D------~p 219 (341)
T 3sz3_A 146 QVPVGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLE------DP 219 (341)
T ss_dssp EECCCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTC------CH
T ss_pred EEEeccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCC------CH
Confidence 667899997433110 111 111122 234544444 333433 46 6999999 78887654 33
Q ss_pred hHHHHHHHh
Q psy2393 377 EWLRYYIAS 385 (576)
Q Consensus 377 d~lR~~l~~ 385 (576)
+.+|==+.+
T Consensus 220 ~~i~kKI~~ 228 (341)
T 3sz3_A 220 KSIIKKINK 228 (341)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhh
Confidence 455544443
No 77
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=84.06 E-value=1.4 Score=44.64 Aligned_cols=66 Identities=20% Similarity=0.059 Sum_probs=38.5
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCC--------CCCcEEeeeccEEe-CC------------------ccccccC-CCcc
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGR--------KLPNNIFVHGFMTI-NG------------------KKMSKSN-KIGI 364 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~--------~~p~~~~~~g~v~~-~g------------------~KMSKS~-gn~i 364 (576)
+..+|.||.. |..+=.-+....+. ..+..++++.++.. +| +|||||. +|.|
T Consensus 183 ~vp~G~DQ~~-~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~~~~I 261 (375)
T 2cyc_A 183 IAHAGMDQRK-AHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAV 261 (375)
T ss_dssp EEEEEGGGHH-HHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGSC
T ss_pred eecccchHHH-HHHHHHHHHHHhCCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhhhhcccCCCCCCee
Confidence 7788999963 32221112233343 10224455666655 66 8999998 7888
Q ss_pred ChhHHhhcCCChhHHHHHHHh
Q psy2393 365 SPLYYLKIGMNPEWLRYYIAS 385 (576)
Q Consensus 365 ~~~dll~~g~g~d~lR~~l~~ 385 (576)
++.| +++.++=.+.+
T Consensus 262 ~L~d------~p~~i~~KI~~ 276 (375)
T 2cyc_A 262 FIHD------SPEEIRQKLRK 276 (375)
T ss_dssp BTTC------CHHHHHHHHHH
T ss_pred ccCC------CHHHHHHHHHH
Confidence 8765 24555555544
No 78
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=82.18 E-value=0.75 Score=50.50 Aligned_cols=54 Identities=28% Similarity=0.245 Sum_probs=31.6
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe--CC-ccccccCC-CccChh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI--NG-KKMSKSNK-IGISPL 367 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~--~g-~KMSKS~g-n~i~~~ 367 (576)
+..+|.||... ..+=.-+....+......++++.++.. +| +|||||.+ |.|++.
T Consensus 186 ~vpvG~DQ~~~-l~l~Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~ 243 (690)
T 3p0j_A 186 ICQLGLDQRKV-NMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFME 243 (690)
T ss_dssp EECCBGGGHHH-HHHHHHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBGGGSCBTT
T ss_pred EEeccccHHHH-HHHHHHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCCCCeeecc
Confidence 66789999743 222111333445432124556666654 67 49999997 678753
No 79
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=81.64 E-value=2 Score=42.89 Aligned_cols=55 Identities=25% Similarity=0.184 Sum_probs=28.9
Q ss_pred EEEeeecCcchhHhHHHHHHHh----cC--CCCCcEEee-e-ccE-Ee-CC-ccccccCC---CccChhH
Q psy2393 313 YHFIGKDIFYFHILFWPAILKF----SG--RKLPNNIFV-H-GFM-TI-NG-KKMSKSNK---IGISPLY 368 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~----~~--~~~p~~~~~-~-g~v-~~-~g-~KMSKS~g---n~i~~~d 368 (576)
+..+|.||...+ .+---+... .| +..|..++. + .++ -+ +| +|||||.+ |.|++.|
T Consensus 155 ~vpvG~DQ~~hl-eltRdia~rfn~~yg~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D 223 (346)
T 3n9i_A 155 QVPVGEDQKQHL-ELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLE 223 (346)
T ss_dssp EECCCGGGHHHH-HHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTS
T ss_pred EEEeccchHHHH-HHHHHHHHHhccccCCcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCC
Confidence 667899997433 211111111 22 344554443 1 222 23 66 59999987 6787644
No 80
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=80.84 E-value=1.3 Score=40.35 Aligned_cols=53 Identities=6% Similarity=0.068 Sum_probs=35.8
Q ss_pred ChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCC
Q psy2393 111 SIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAK 164 (576)
Q Consensus 111 ~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~ 164 (576)
..+|....+.++.+|. ......+.....|.|+.|+-......+-..||.|+.+
T Consensus 128 E~ehe~~~~~~l~~l~-~~~~~~~~~~~~~~C~~CG~~~~g~~~p~~CP~C~~~ 180 (191)
T 1lko_A 128 EEFHEKRFLDFARNIK-EGRVFLREQATKWRCRNCGYVHEGTGAPELCPACAHP 180 (191)
T ss_dssp HHHHHHHHHHHHHHHH-HTCSSEEEEEEEEEETTTCCEEEEEECCSBCTTTCCB
T ss_pred HHHHHHHHHHHHHhhh-cccccccCCCceEEECCCCCEeeCCCCCCCCCCCcCC
Confidence 5578888999999997 5444444556688899988554322333478877765
No 81
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=76.63 E-value=5.1 Score=33.16 Aligned_cols=81 Identities=9% Similarity=0.055 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhhcCc-ccc---ccccCCChhhHHHHHHHHHHHHhcCC-cEE------ecceeeeecCCCCccccc
Q psy2393 83 EFINNISSNRKKYLDGFYI-KFD---NWYSTDSIENIDLVQKIYDTLYNKAK-LII------NKKINQFFDPIKNIFLPD 151 (576)
Q Consensus 83 ~~~~~~~~~~~~~l~~lgi-~~d---~~~~t~~~~~~~~v~~~~~~L~~~~g-~iy------~~~~~~~~~~~~~~~l~~ 151 (576)
.+++...+.+.+..+.-|. ... ..+...+--+.+..+..|..+. +.. ... +.....|+|..|+....-
T Consensus 7 si~~~i~~~~~~~A~~~g~~~V~~V~l~IG~ls~v~~e~l~f~f~~~~-~gt~~~e~a~L~i~~~p~~~~C~~CG~~~e~ 85 (119)
T 2kdx_A 7 SVVSSLIALCEEHAKKNQAHKIERVVVGIGERSAMDKSLFVSAFETFR-EESLVCKDAILDIVDEKVELECKDCSHVFKP 85 (119)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCEEEEEEETTSCCCHHHHHHHHHHHG-GGCTTTSSCCEEEEEECCEEECSSSSCEECS
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEEEeehhccccHHHHHHHHHHHH-hCChhhcCcEEEEEeccceEEcCCCCCEEeC
Confidence 3556666666666666665 222 2223334456777788888876 444 322 344567888888766554
Q ss_pred cceec-cCCCCCCC
Q psy2393 152 RYIKG-ECPICNAK 164 (576)
Q Consensus 152 ~~v~~-~~p~c~~~ 164 (576)
..... .||.|+..
T Consensus 86 ~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 86 NALDYGVCEKCHSK 99 (119)
T ss_dssp CCSTTCCCSSSSSC
T ss_pred CCCCCCcCccccCC
Confidence 33344 67777654
No 82
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=71.59 E-value=7.8 Score=33.08 Aligned_cols=69 Identities=13% Similarity=-0.013 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhhcCc-ccc---ccccCCChhhHHHHHHHHHHHHhcCCcEEe-------cceeeeecCCCCccccc
Q psy2393 83 EFINNISSNRKKYLDGFYI-KFD---NWYSTDSIENIDLVQKIYDTLYNKAKLIIN-------KKINQFFDPIKNIFLPD 151 (576)
Q Consensus 83 ~~~~~~~~~~~~~l~~lgi-~~d---~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~-------~~~~~~~~~~~~~~l~~ 151 (576)
.+++...+.+.+..+.-|. ... ..+...+.-+.+..+..|..+. +|-+.+ .....|+|..|+....-
T Consensus 5 sia~~iv~~v~~~A~~~g~~~V~~V~l~IG~ls~v~~e~l~faf~~~~--~gt~~e~A~L~i~~~p~~~~C~~CG~~~~~ 82 (139)
T 3a43_A 5 ALADAIVRTVLDYAQREGASRVKAVRVVLGELQDVAEDIVKFAMEQLF--AGTIAEGAEIEFVEEEAVFKCRNCNYEWKL 82 (139)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEEEEEETTCCCCHHHHHHHHHHHH--TTSTTTTCEEEEEEECCEEEETTTCCEEEG
T ss_pred HHHHHHHHHHHHHHHHcCCCeehhHHhhHHHHhhhhHHHHHHHHHHHH--cCCcccCCEEEEEecCCcEECCCCCCEEec
Confidence 3556666667776666665 222 2222333346677778888776 554444 34567899999776554
Q ss_pred cc
Q psy2393 152 RY 153 (576)
Q Consensus 152 ~~ 153 (576)
.+
T Consensus 83 ~~ 84 (139)
T 3a43_A 83 KE 84 (139)
T ss_dssp GG
T ss_pred cc
Confidence 44
No 83
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=71.31 E-value=3 Score=42.13 Aligned_cols=52 Identities=21% Similarity=0.125 Sum_probs=28.3
Q ss_pred EEEeeecCcchhHhHHHHHHHhcC----CCCCcEEeeeccEEe-CCccccccCC-CccCh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSG----RKLPNNIFVHGFMTI-NGKKMSKSNK-IGISP 366 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~----~~~p~~~~~~g~v~~-~g~KMSKS~g-n~i~~ 366 (576)
+-..|.||.. |..+---+....+ ++.| ..+++-++.- +|+|||||.. |.|.+
T Consensus 211 ~VPVG~DQ~~-hleltRdiA~rfn~~~~~~~P-~~~~~~~~pgldG~KmS~S~~ns~I~l 268 (372)
T 3a04_A 211 VVPVGADQDP-HLRLTRDLADRMAGVVELERP-ASTYHKLQPGLDGRKMSSSRPDSTIFL 268 (372)
T ss_dssp EEEEEGGGHH-HHHHHHHHHHHTTTTSCCCCC-EEEEECCCBCTTSSBCCTTSGGGSCBT
T ss_pred ecccchhhHH-HHHHHHHHHHHhcCcccccCh-hhhhhcccCCCCCCccCCCCCCccccc
Confidence 4446999974 3322111222232 3444 3444444433 8999999984 45654
No 84
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=67.79 E-value=3.5 Score=41.41 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=21.1
Q ss_pred CCCCc-ccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecC
Q psy2393 22 YANGE-LHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICA 62 (576)
Q Consensus 22 ~~nG~-lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g 62 (576)
-|||+ |||||+. .+. .+.+++ ..| +++.++.|
T Consensus 54 ~PTg~sLHLGhl~-~l~--~~~~lQ-~~G-----~~~~~lIa 86 (356)
T 2pid_A 54 DPTADSLHVGHLL-ALL--GLFHLQ-RAG-----HNVIALVG 86 (356)
T ss_dssp CCSSSSCBHHHHH-HHH--HHHHHH-HTT-----CEEEEEEC
T ss_pred cCCCCcccHHHHH-HHH--HHHHHH-HCC-----CcEEEEEc
Confidence 56696 9999944 332 355554 468 98877665
No 85
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=67.62 E-value=3.4 Score=40.91 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=21.3
Q ss_pred CCCCc-ccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecC
Q psy2393 22 YANGE-LHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICA 62 (576)
Q Consensus 22 ~~nG~-lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g 62 (576)
-|||+ |||||... --.+.+++ ..| +++.++.|
T Consensus 41 ~PTg~slHlGh~l~---l~~~~~lQ-~~g-----~~~~~~i~ 73 (322)
T 2yxn_A 41 DPTADSLHLGHLVP---LLCLKRFQ-QAG-----HKPVALVG 73 (322)
T ss_dssp CCSSSSCBHHHHHH---HHHHHHHH-HTT-----CEEEEEEC
T ss_pred cCCCCcccHHHHHH---HHHHHHHH-HcC-----CcEEEEEc
Confidence 56689 99999663 23344444 458 88877665
No 86
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=66.02 E-value=3.8 Score=42.02 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=21.8
Q ss_pred CCCCc-ccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecC
Q psy2393 22 YANGE-LHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICA 62 (576)
Q Consensus 22 ~~nG~-lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g 62 (576)
-|||+ |||||... --.+.+++ ..| +++.++.|
T Consensus 38 dPTg~sLHlGh~v~---l~~l~~lQ-~~G-----~~~i~lIg 70 (419)
T 2ts1_A 38 DPTADSLHIGHLAT---ILTMRRFQ-QAG-----HRPIALVG 70 (419)
T ss_dssp CCSSSSCBGGGHHH---HHHHHHHH-HTT-----CEEEEEEC
T ss_pred CCCCCCccHHHHHH---HHHHHHHH-HCC-----CcEEEEEc
Confidence 56688 99999663 23344544 469 98877765
No 87
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=65.11 E-value=3.9 Score=42.02 Aligned_cols=70 Identities=19% Similarity=0.270 Sum_probs=38.1
Q ss_pred CCCCc-ccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcc---cHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q psy2393 22 YANGE-LHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAH---GAAIMIAAEKAGMTPKEFINNISSNRKKYLD 97 (576)
Q Consensus 22 ~~nG~-lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~---G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 97 (576)
-|||+ |||||... --.+.+++ ..| +++.++.| |.| |+|--...++.-.+++++ ++....+.+++.
T Consensus 40 dPTg~sLHlGh~v~---l~~~~~lQ-~~G-----~~~~~lIg-d~ta~igdp~gk~~~R~~l~~e~i-~~n~~~~~~~~~ 108 (420)
T 1jil_A 40 DPTADSLHIGHLLP---FLTLRRFQ-EHG-----HRPIVLIG-GGTGMIGDPSGKSEERVLQTEEQV-DKNIEGISKQMH 108 (420)
T ss_dssp CCSSSSCBHHHHHH---HHHHHHHH-HTT-----CEEEEEEC-TTGGGTCCCTTCSSCCCCCCHHHH-HHHHHHHHHHHH
T ss_pred CCCCCCccHHHHHH---HHHHHHHH-HCC-----CcEEEEEc-CceeEecCCCccccccccCCHHHH-HHHHHHHHHHHH
Confidence 56688 99999663 23344544 469 98887765 333 333111111112355544 445566666666
Q ss_pred hcCccc
Q psy2393 98 GFYIKF 103 (576)
Q Consensus 98 ~lgi~~ 103 (576)
++ +++
T Consensus 109 ~~-ld~ 113 (420)
T 1jil_A 109 NI-FEF 113 (420)
T ss_dssp HH-SCC
T ss_pred HH-hCC
Confidence 66 555
No 88
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=64.46 E-value=4.3 Score=41.27 Aligned_cols=32 Identities=13% Similarity=0.336 Sum_probs=21.6
Q ss_pred CCCCc-ccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecC
Q psy2393 22 YANGE-LHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICA 62 (576)
Q Consensus 22 ~~nG~-lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g 62 (576)
-|||+ |||||... + -.+.+++ ..| +++.++.|
T Consensus 72 dPTg~sLHlGhlv~-l--~~l~~lQ-~~G-----~~~~~lIg 104 (392)
T 1y42_X 72 DPTAPSLHVGHLLP-L--MPLFWMY-LEG-----YKAFTLIG 104 (392)
T ss_dssp CCCSSSCBGGGHHH-H--HHHHHHH-HHT-----CEEEEEEC
T ss_pred cCCCCCccHHHHHH-H--HHHHHHH-HcC-----CcEEEEEc
Confidence 66699 99999773 2 2344554 458 98877654
No 89
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=62.62 E-value=4.8 Score=41.40 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=21.9
Q ss_pred CCCCCc-ccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecC
Q psy2393 21 PYANGE-LHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICA 62 (576)
Q Consensus 21 P~~nG~-lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g 62 (576)
--|||+ |||||+.. + -.+.+++ ..| +++.++.|
T Consensus 39 ~dPTg~sLHLGhlv~-l--~~l~~lQ-~~G-----~~~i~lIg 72 (432)
T 2jan_A 39 FDPTAPSLHAGHLVP-L--LTLRRFQ-RAG-----HRPIVLAG 72 (432)
T ss_dssp ECCSSSSCBGGGHHH-H--HHHHHHH-HTT-----CEEEEEEC
T ss_pred eCCCCCCcCHHHHHH-H--HHHHHHH-HCC-----CcEEEEEc
Confidence 366695 99999443 2 2355555 469 99888765
No 90
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=61.92 E-value=6.4 Score=40.54 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=24.8
Q ss_pred CeEEEEcCCCCCCCc-ccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecC
Q psy2393 12 RRIFVTTALPYANGE-LHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICA 62 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~-lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g 62 (576)
+++.|++| --|||+ |||||... --.+.+++ ..| +++.+..|
T Consensus 36 ~~~~vy~G-~dPTg~sLHlGh~v~---l~~l~~lQ-~~G-----~~~i~lIg 77 (432)
T 1h3f_A 36 RPLTVKLG-ADPTRPDLHLGHAVV---LRKMRQFQ-ELG-----HKVVLIIG 77 (432)
T ss_dssp SCCEEEEE-ECTTCCSCBHHHHHH---HHHHHHHH-HTT-----CEEEEEEC
T ss_pred CCcEEEEc-ccCCCCCCchhhHHH---HHHHHHHH-HCC-----CCEEEEEc
Confidence 34444443 356675 99999763 33444444 468 88877665
No 91
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=61.03 E-value=7.1 Score=27.74 Aligned_cols=36 Identities=14% Similarity=0.144 Sum_probs=23.7
Q ss_pred cCCCCCCCC-----CCC-CccccCCCcCCCCccCCCcccCCC
Q psy2393 157 ECPICNAKD-----QYG-DFCECCSSIYTPTKLINPYSILSG 192 (576)
Q Consensus 157 ~~p~c~~~~-----~~g-~~c~~cg~~~~~~~l~~p~~~~~~ 192 (576)
.||.|+... ..| ..|..||..+...-+...--||+-
T Consensus 13 ~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e~~iD~gpEWR~F 54 (58)
T 1dl6_A 13 TCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTF 54 (58)
T ss_dssp SBTTBSSSCCEECSSSCCEECTTTCCEECCSCCCCCCSCCCS
T ss_pred cCcCCCCCceeEeCCCCeEEeCCCCCEEeccccccCCccccc
Confidence 688887632 223 469999998876655555556653
No 92
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=59.84 E-value=7.1 Score=26.66 Aligned_cols=36 Identities=17% Similarity=0.354 Sum_probs=24.1
Q ss_pred cCCCCCCCC-----CCC-CccccCCCcCCCCccCCCcccCCC
Q psy2393 157 ECPICNAKD-----QYG-DFCECCSSIYTPTKLINPYSILSG 192 (576)
Q Consensus 157 ~~p~c~~~~-----~~g-~~c~~cg~~~~~~~l~~p~~~~~~ 192 (576)
.||.|+..+ ..| -.|..||..+....+...--||+-
T Consensus 7 ~CP~C~~~~l~~d~~~gelvC~~CG~v~~e~~id~~~ewr~f 48 (50)
T 1pft_A 7 VCPACESAELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAF 48 (50)
T ss_dssp SCTTTSCCCEEEETTTTEEEESSSCCBCCCCCCCCCSSSSCC
T ss_pred eCcCCCCcceEEcCCCCeEECcccCCcccccccccCCccccc
Confidence 588887621 122 469999998887777655666653
No 93
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=59.07 E-value=7.6 Score=34.39 Aligned_cols=50 Identities=18% Similarity=0.190 Sum_probs=31.2
Q ss_pred ChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCC
Q psy2393 111 SIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAK 164 (576)
Q Consensus 111 ~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~ 164 (576)
...|.+..+.++..|. +|..+. ....|-|+.|+-... ...-..||.|+.+
T Consensus 113 E~~H~~~~~~~l~~l~--~~~~~~-~~~~~~C~~CG~i~~-~~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 113 EKIHAELYRKAKEKAE--KGEDIE-IKKVYICPICGYTAV-DEAPEYCPVCGAP 162 (170)
T ss_dssp HHHHHHHHHHHHHHHT--TTCCCC-CSCEEECTTTCCEEE-SCCCSBCTTTCCB
T ss_pred HHHHHHHHHHHHHHHh--cCCcCC-CCCeeEeCCCCCeeC-CCCCCCCCCCCCC
Confidence 5578888888888886 555553 346677877764433 2233366666654
No 94
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=57.13 E-value=5.7 Score=26.63 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=16.2
Q ss_pred eecCCCCccccccceec----cCCCCCCC
Q psy2393 140 FFDPIKNIFLPDRYIKG----ECPICNAK 164 (576)
Q Consensus 140 ~~~~~~~~~l~~~~v~~----~~p~c~~~ 164 (576)
|-|-+|++..+..+.+- .||+||..
T Consensus 4 Y~C~rCg~~fs~~el~~lP~IrCpyCGyr 32 (48)
T 4ayb_P 4 YRCGKCWKTFTDEQLKVLPGVRCPYCGYK 32 (48)
T ss_dssp -CCCCTTTTCCCCCSCCCSSSCCTTTCCS
T ss_pred EEeeccCCCccHHHHhhCCCcccCccCcE
Confidence 44777777777776653 57777753
No 95
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=50.50 E-value=8.8 Score=27.50 Aligned_cols=21 Identities=33% Similarity=0.836 Sum_probs=15.1
Q ss_pred cCCCCCCCCCCCCccccCCCc
Q psy2393 157 ECPICNAKDQYGDFCECCSSI 177 (576)
Q Consensus 157 ~~p~c~~~~~~g~~c~~cg~~ 177 (576)
.||.||...-.-..|..||.+
T Consensus 32 ~c~~cG~~~~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 32 ECPQCHGKKLSHHICPNCGYY 52 (60)
T ss_dssp ECTTTCCEECTTBCCTTTCBS
T ss_pred ECCCCCCEeCCceEcCCCCcC
Confidence 577887766566778888854
No 96
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=48.99 E-value=6.8 Score=28.08 Aligned_cols=21 Identities=29% Similarity=0.673 Sum_probs=13.6
Q ss_pred cCCCCCCCCCCCCccccCCCc
Q psy2393 157 ECPICNAKDQYGDFCECCSSI 177 (576)
Q Consensus 157 ~~p~c~~~~~~g~~c~~cg~~ 177 (576)
.||.||...-.-..|..||-|
T Consensus 32 ~c~~cGe~~~~H~vc~~CG~Y 52 (60)
T 3v2d_5 32 PCPECKAMKPPHTVCPECGYY 52 (60)
T ss_dssp ECTTTCCEECTTSCCTTTCEE
T ss_pred ECCCCCCeecceEEcCCCCcC
Confidence 477777655555668888743
No 97
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=47.69 E-value=15 Score=36.60 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=25.2
Q ss_pred cccccceeccCCCCCCCC-------CCC-CccccCCCcCCCCccCCCcccCC
Q psy2393 148 FLPDRYIKGECPICNAKD-------QYG-DFCECCSSIYTPTKLINPYSILS 191 (576)
Q Consensus 148 ~l~~~~v~~~~p~c~~~~-------~~g-~~c~~cg~~~~~~~l~~p~~~~~ 191 (576)
|-++-.+...||.|+... ..| ..|..||.+++..-+...--||+
T Consensus 14 ~~~~~~~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~e~~id~~~EwR~ 65 (345)
T 3k7a_M 14 RGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRT 65 (345)
T ss_dssp ---CCCCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCCCCCCCTTCCCCC
T ss_pred cCccccCCCcCcCCCCCCCceEEECCCCCEecCCCCeEcccccccCCccccc
Confidence 334444456788887741 123 36999999887655544444554
No 98
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=46.66 E-value=13 Score=33.85 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=28.9
Q ss_pred ChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCC
Q psy2393 111 SIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAK 164 (576)
Q Consensus 111 ~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~ 164 (576)
..+|....+.++.+|. +| .....|.|+.|+-.+-. ..-..||.|+.+
T Consensus 149 E~~H~~~~~~ll~~l~--~~----~~~~~~~C~~CG~i~~g-~~p~~CP~C~~~ 195 (202)
T 1yuz_A 149 ESVHAERYLAAYNDID--AP----DDDKFHLCPICGYIHKG-EDFEKCPICFRP 195 (202)
T ss_dssp HHHHHHHHHHHHHTTT--CC----CSCCEEECSSSCCEEES-SCCSBCTTTCCB
T ss_pred HHHHHHHHHHHHHHHh--cC----CCCcEEEECCCCCEEcC-cCCCCCCCCCCC
Confidence 4567777788887776 44 44567888888744322 212356666654
No 99
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=39.15 E-value=5 Score=31.49 Aligned_cols=51 Identities=14% Similarity=0.219 Sum_probs=21.8
Q ss_pred cCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcC
Q psy2393 128 KAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIY 178 (576)
Q Consensus 128 ~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~ 178 (576)
..|++-++......||.|+..|.-.--...|..|...=..--.|+.|+..+
T Consensus 21 ~~~~~~~~~~M~~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~L 71 (101)
T 2jne_A 21 SSGLVPRGSHMELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPL 71 (101)
T ss_dssp ----------CCCBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBC
T ss_pred ccccccCcccccccCccCCCcceecCCEEECccccchhhccccCcchhhHH
Confidence 567777766666888888877653222224666654322223455555543
No 100
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.92 E-value=13 Score=25.55 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=11.5
Q ss_pred eecCCCCc--cccccceeccCCCCC
Q psy2393 140 FFDPIKNI--FLPDRYIKGECPICN 162 (576)
Q Consensus 140 ~~~~~~~~--~l~~~~v~~~~p~c~ 162 (576)
-+||.|++ +..+..-...|+.|+
T Consensus 20 k~CP~CG~~~fm~~~~~R~~C~kCG 44 (50)
T 3j20_Y 20 KFCPRCGPGVFMADHGDRWACGKCG 44 (50)
T ss_dssp EECSSSCSSCEEEECSSEEECSSSC
T ss_pred ccCCCCCCceEEecCCCeEECCCCC
Confidence 46666665 444333333455554
No 101
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=33.63 E-value=19 Score=20.83 Aligned_cols=15 Identities=40% Similarity=0.727 Sum_probs=9.7
Q ss_pred ccCCChHHHHHHHhc
Q psy2393 559 MTRVDKNIVDNLLKN 573 (576)
Q Consensus 559 f~r~d~~~~~~~~~~ 573 (576)
..|+|.++|++|+.+
T Consensus 6 vtrfdekqieelldn 20 (31)
T 4h62_V 6 VTRFDEKQIEELLDN 20 (31)
T ss_dssp ----CHHHHHHHHHH
T ss_pred cccccHHHHHHHHHH
Confidence 368999999999864
No 102
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=33.37 E-value=19 Score=26.64 Aligned_cols=11 Identities=9% Similarity=0.132 Sum_probs=5.7
Q ss_pred cccCCCCccEE
Q psy2393 187 YSILSGTKPII 197 (576)
Q Consensus 187 ~~~~~~~~~~~ 197 (576)
+|..||+.+.+
T Consensus 47 rCp~CG~RILy 57 (70)
T 1twf_L 47 RCKDCGHRILL 57 (70)
T ss_dssp CCSSSCCCCCB
T ss_pred cCCCCCceEeE
Confidence 45555554443
No 103
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=30.46 E-value=14 Score=28.12 Aligned_cols=10 Identities=20% Similarity=0.092 Sum_probs=4.6
Q ss_pred ecCCCCcccc
Q psy2393 141 FDPIKNIFLP 150 (576)
Q Consensus 141 ~~~~~~~~l~ 150 (576)
.||.|+..+.
T Consensus 4 ~CP~C~~~l~ 13 (81)
T 2jrp_A 4 TCPVCHHALE 13 (81)
T ss_dssp CCSSSCSCCE
T ss_pred CCCCCCCccc
Confidence 3455544443
No 104
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=25.33 E-value=73 Score=17.92 Aligned_cols=19 Identities=21% Similarity=0.454 Sum_probs=16.3
Q ss_pred cchHhh-hHHHHHHHHHHHh
Q psy2393 28 HIGHIM-EYIQADIWVRFQC 46 (576)
Q Consensus 28 HiGH~~-~~i~~Dvl~R~~~ 46 (576)
|+|-+. +.++.|-+.++..
T Consensus 2 ~VGKiYA~llI~d~~r~~k~ 21 (23)
T 3dvk_B 2 HMGKIYAAMMIMDYYKQSKV 21 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhc
Confidence 899999 5899999998765
No 105
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=25.04 E-value=30 Score=30.52 Aligned_cols=20 Identities=0% Similarity=-0.119 Sum_probs=15.0
Q ss_pred cceeeeecCCCCccccccce
Q psy2393 135 KKINQFFDPIKNIFLPDRYI 154 (576)
Q Consensus 135 ~~~~~~~~~~~~~~l~~~~v 154 (576)
.++-.|||+.|+..+.+.+.
T Consensus 118 ~d~~~wyc~~c~~~~~e~~f 137 (174)
T 1yfu_A 118 LDGFEWYCDACGHLVHRVEV 137 (174)
T ss_dssp CEEEEEECTTTCCEEEEEEE
T ss_pred ccceEEEcCCCCCEEEEEEE
Confidence 34567999999888776654
No 106
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=24.68 E-value=46 Score=31.01 Aligned_cols=80 Identities=15% Similarity=0.242 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHhcCCcEEecceeeeecCCC----Cccccccce--eccCCCCCCCCCCCCccccCCCcCCC-------
Q psy2393 114 NIDLVQKIYDTLYNKAKLIINKKINQFFDPIK----NIFLPDRYI--KGECPICNAKDQYGDFCECCSSIYTP------- 180 (576)
Q Consensus 114 ~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~----~~~l~~~~v--~~~~p~c~~~~~~g~~c~~cg~~~~~------- 180 (576)
-...++.++.+|. +.|.+...++..-+.|++ ..+|.+.+- ...|..|..--..|..|.+|+..+..
T Consensus 134 ~~~eae~lL~~lv-~~gWl~~~~g~~~l~~R~l~El~~~l~~~~~~~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~ 212 (238)
T 3nw0_A 134 RKKEAEQVLQKFV-QNKWLIEKEGEFTLHGRAILEMEQYIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYF 212 (238)
T ss_dssp CHHHHHHHHHHHH-HTTSEEEETTEEEECHHHHHHHHHHHHHHCTTTCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHT
T ss_pred CHHHHHHHHHHHH-HhcchhhhCCEEEecCccHHHHHHHHHHhcCCCCCcCcchhhHHhCCcccCccChHHHHHHHHHHH
Confidence 4667899999999 999998865443343332 112222211 23588888777778889888865432
Q ss_pred CccCCCcccCCCCc
Q psy2393 181 TKLINPYSILSGTK 194 (576)
Q Consensus 181 ~~l~~p~~~~~~~~ 194 (576)
.....+.|..|+++
T Consensus 213 ~~~~~~~CP~C~~~ 226 (238)
T 3nw0_A 213 QSNAEPRCPHCNDY 226 (238)
T ss_dssp TTCSSCBCTTTCCB
T ss_pred HhCCCCCCCCCCCC
Confidence 12235677777763
No 107
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=23.86 E-value=32 Score=30.32 Aligned_cols=20 Identities=0% Similarity=0.013 Sum_probs=14.8
Q ss_pred cceeeeecCCCCccccccce
Q psy2393 135 KKINQFFDPIKNIFLPDRYI 154 (576)
Q Consensus 135 ~~~~~~~~~~~~~~l~~~~v 154 (576)
.++-.|||+.|+..+.+.+.
T Consensus 120 ~D~~~wyc~~c~~~~~e~~f 139 (176)
T 1zvf_A 120 NDKIRWYCSHCRQVVHESEL 139 (176)
T ss_dssp CCEEEEECTTTCCEEEEEEC
T ss_pred ccceEEEcCCCCCEEEEEEE
Confidence 34567999999887776544
No 108
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=23.42 E-value=26 Score=26.31 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCcceEEecCCCc------ccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2393 35 YIQADIWVRFQCMQQDNGKSRQVYFICADDA------HGAAIMIAAEKAGMTPKEFINNISSNR 92 (576)
Q Consensus 35 ~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~------~G~~i~~~a~~~g~~~~~~~~~~~~~~ 92 (576)
.+++|++.+|-+... |+.-.|+|| .+..++..+...|+++.++.+...+.+
T Consensus 7 ~tI~eIv~~~P~~~~-------vf~~~G~~C~gC~~a~~~tLeeA~~~hgiD~d~ll~eLn~~i 63 (76)
T 2k53_A 7 MIIADVLQMDRGTAP-------IFINNGMHCLGCPSSMGESIEDACAVHGIDADKLVKELNEYF 63 (76)
T ss_dssp SBHHHHHHHCGGGHH-------HHHHTTCCCCSSCCCCCSBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHCHHHHH-------HHHHcCCCCCCCCccccccHHHHHHHcCCCHHHHHHHHHHHH
Confidence 456777776533322 444445555 246788899999999988876655443
No 109
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=22.37 E-value=3.3e+02 Score=22.53 Aligned_cols=45 Identities=7% Similarity=-0.088 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcC
Q psy2393 441 DTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNK 485 (576)
Q Consensus 441 ~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k 485 (576)
..+...|....+.+..|+...+...+...-.+.+..+..|++...
T Consensus 83 ~~lak~l~~~L~~LD~AA~~~n~~~a~k~Y~~a~adfdafl~liP 127 (130)
T 3zsu_A 83 TALTRALTDDFLKIDQGADLDSVTVAQEGFREAEADFKAYLNSLP 127 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 556677777788899999999999999999999988999987754
No 110
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=21.95 E-value=55 Score=23.55 Aligned_cols=12 Identities=17% Similarity=0.152 Sum_probs=6.6
Q ss_pred cccCCCCccEEe
Q psy2393 187 YSILSGTKPIIK 198 (576)
Q Consensus 187 ~~~~~~~~~~~~ 198 (576)
+|..||..+.++
T Consensus 40 RC~~CG~RILyK 51 (63)
T 3h0g_L 40 RCRECGHRVMYK 51 (63)
T ss_dssp CCSSSCCCCCBC
T ss_pred ECCCCCcEEEEE
Confidence 555566655543
No 111
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=21.44 E-value=14 Score=36.66 Aligned_cols=27 Identities=26% Similarity=0.636 Sum_probs=15.6
Q ss_pred eeccCCCCCC-C-C-----CCC-CccccCCCcCCC
Q psy2393 154 IKGECPICNA-K-D-----QYG-DFCECCSSIYTP 180 (576)
Q Consensus 154 v~~~~p~c~~-~-~-----~~g-~~c~~cg~~~~~ 180 (576)
+...||.|+. + . ..| ..|..||.+++.
T Consensus 20 ~~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~e 54 (345)
T 4bbr_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSD 54 (345)
T ss_dssp --CCCSSCCCSSCCEEEEGGGTEEEETTTCBEEES
T ss_pred cCCcCCCCCCCCCceeEECCCCcEEeCCCCCCccC
Confidence 4457888875 2 1 124 358888887654
No 112
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=20.74 E-value=42 Score=23.90 Aligned_cols=19 Identities=26% Similarity=0.786 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCCccccCCCc
Q psy2393 158 CPICNAKDQYGDFCECCSSI 177 (576)
Q Consensus 158 ~p~c~~~~~~g~~c~~cg~~ 177 (576)
||.|+...- ...|+.||..
T Consensus 9 C~~CgvYTL-k~~CP~CG~~ 27 (60)
T 2apo_B 9 CPKCGLYTL-KEICPKCGEK 27 (60)
T ss_dssp CTTTCCEES-SSBCSSSCSB
T ss_pred CCCCCCEec-cccCcCCCCc
Confidence 555544322 3456666553
No 113
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=20.69 E-value=43 Score=29.08 Aligned_cols=9 Identities=22% Similarity=0.076 Sum_probs=5.2
Q ss_pred cccCCCCcc
Q psy2393 187 YSILSGTKP 195 (576)
Q Consensus 187 ~~~~~~~~~ 195 (576)
.|..||+++
T Consensus 150 ~Cp~CG~~~ 158 (165)
T 2lcq_A 150 VCPDCGSKV 158 (165)
T ss_dssp BCTTTCCBE
T ss_pred cCCCCCCcc
Confidence 566666653
No 114
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=20.46 E-value=40 Score=29.34 Aligned_cols=12 Identities=0% Similarity=-0.255 Sum_probs=6.3
Q ss_pred eeecCCCCcccc
Q psy2393 139 QFFDPIKNIFLP 150 (576)
Q Consensus 139 ~~~~~~~~~~l~ 150 (576)
.+.|..|+....
T Consensus 132 ~y~C~~Cg~~~~ 143 (165)
T 2lcq_A 132 RYVCIGCGRKFS 143 (165)
T ss_dssp CEEESSSCCEES
T ss_pred EEECCCCCCccc
Confidence 355666655444
Done!