RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2393
(576 letters)
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 750 bits (1940), Expect = 0.0
Identities = 271/562 (48%), Positives = 360/562 (64%), Gaps = 24/562 (4%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
R+I VT ALPYANG +H+GH++EYIQADIWVR+Q M + +V F+CADDAHG IM
Sbjct: 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRM-----RGHEVLFVCADDAHGTPIM 56
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
+ AEK G+TP+E I + K+ GF I FDN+ ST S EN +L Q+IY L +
Sbjct: 57 LKAEKEGITPEELIARYHAEHKRDFAGFGISFDNYGSTHSEENRELAQEIYLKLK-ENGY 115
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
I K I Q +DP K +FLPDR++KG CP C A+DQYGD CE C + Y+PT+LINP S +S
Sbjct: 116 IYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGATYSPTELINPKSAIS 175
Query: 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISR 251
G P++K S+HFFFKL R +FL++W LQP + NK+KEWLE+ DWDISR
Sbjct: 176 GATPVLKESEHFFFKLP--RFEEFLKEWITRSGELQPNVANKMKEWLEEG--LQDWDISR 231
Query: 252 DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEF-ISSPNT 310
DAPYFG +IP K FYVWLDAPIGY++S KN +K G ++DE+ +T
Sbjct: 232 DAPYFGFEIPGAPGKVFYVWLDAPIGYISSTKNLCDKRGGL-------DWDEYWKKDSDT 284
Query: 311 EQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYL 370
E YHFIGKDI YFH LFWPA+L+ +G +LP N+F HGF+T+ G KMSKS I YL
Sbjct: 285 ELYHFIGKDIIYFHTLFWPAMLEGAGYRLPTNVFAHGFLTVEGAKMSKSRGTFIWARTYL 344
Query: 371 KIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKG 430
++P++LRYY+A+KL I+D+DFN + F VNS+L+GK +N ASR++ FI K F G
Sbjct: 345 DH-LDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFINKRFDG 403
Query: 431 YLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWKLA 490
L + L + + I + YE R F K L ++ +F N + D N+PWKLA
Sbjct: 404 KLP--DALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNEPWKLA 461
Query: 491 KNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLTQNH 550
K + E+L + S L FR L IYLKP+LP LA+ E FLN+ L W + PL H
Sbjct: 462 KQDG--ERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNLEELTWDDAQQPLA-GH 518
Query: 551 KINKYRHLMTRVDKNIVDNLLK 572
INK++ L TR++ ++ L++
Sbjct: 519 PINKFKILFTRIEDKQIEALIE 540
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
Length = 556
Score = 535 bits (1382), Expect = 0.0
Identities = 194/571 (33%), Positives = 290/571 (50%), Gaps = 31/571 (5%)
Query: 12 RRIFVTTALPYANGELHIGHIME-YIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI 70
RI +T+A PYANG LH+GH+ + AD++ R+Q ++ + V F+ D HG I
Sbjct: 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNE-----VLFVSGSDEHGTPI 57
Query: 71 MIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAK 130
+AA+K G+TP+E + K+ I +D + T S + ++VQ+ + LY
Sbjct: 58 ELAAKKEGVTPQELADKYHEEHKEDFKKLGISYDLFTRTTSPNHHEVVQEFFLKLYEN-G 116
Query: 131 LIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSIL 190
I K I Q + P FLPDRY++G CP C + GD C+ C ++ PT LINP S +
Sbjct: 117 YIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCGALLDPTDLINPRSKI 176
Query: 191 SGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDIS 250
SG+ P + ++HFF L + LR W P ++N WL++ K I+
Sbjct: 177 SGSTPEFRETEHFFLDLP--AFAERLRAWIESSGDWPPNVLNFTLNWLKEGLK--PRAIT 232
Query: 251 RDAPYFGIKIP--NTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSP 308
RD +GI +P K FYVW DA IGY+++ K + E+ G + EF P
Sbjct: 233 RDLD-WGIPVPWPGFEGKVFYVWFDAVIGYISASKEWAERTGDP------EAWKEFWLDP 285
Query: 309 NTEQYHFIGKDIFYFHILFWPAILKFSGR--KLPNNIFVHGFMTINGKKMSKSNKIGISP 366
T+ Y+FIGKD FH + WPA+L SG KLP+ I ++T+ G K SKS GI
Sbjct: 286 ETKSYYFIGKDNIPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLTLEGGKFSKSRGWGIWV 345
Query: 367 LYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEK 426
L+ P++LRYY+A+ + D DF + F+ VNS+L KY N+ +R SFIEK
Sbjct: 346 DDALER-YPPDYLRYYLAANA-PENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFIEK 403
Query: 427 YFKGYLNMKWVKDNDT-FLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNK 485
YF G + + D D +++ + + + E F K L ++E N + D+
Sbjct: 404 YFGGIVPPGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYLDEKA 463
Query: 486 PWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFL---NISPLQWINI 542
PWKLAK + E+ + L R+L + L P LP A+ + L NI L W ++
Sbjct: 464 PWKLAKTDR--ERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGGENIEKLTWESL 521
Query: 543 FTPLTQNHKINKYRHLMTRVDKNIVDNLLKN 573
PL H INK L ++D ++ L+
Sbjct: 522 K-PLLPGHPINKPEPLFKKIDDEQIEEELER 551
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 515 bits (1328), Expect = e-178
Identities = 192/574 (33%), Positives = 294/574 (51%), Gaps = 29/574 (5%)
Query: 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGA 68
K +++I VTTALPY NG H+GH+ Y+ AD++ R+ ++ +V+F+ D HG
Sbjct: 2 KMMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLR-----GYEVFFLTGTDEHGT 56
Query: 69 AIMIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNK 128
I + AEK G+TP+E ++ K+ I FDN+ T S E+ +LVQ+ + LY +
Sbjct: 57 KIELKAEKEGITPQELVDKNHEEFKELFKALNISFDNFIRTTSPEHKELVQEFFLKLY-E 115
Query: 129 AKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYS 188
I ++ + FLPDRY++G CP C +D GD CE C PT+LINP
Sbjct: 116 NGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRTLDPTELINPVC 175
Query: 189 ILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLE-KDNKFNDW 247
++SG P ++ +H+FF+LS + D L +W N+ E L D
Sbjct: 176 VISGATPEVREEEHYFFRLS--KFQDKLLEW-YESNPDFIWPANRRNEVLNFLKEGLKDL 232
Query: 248 DISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISS 307
I+R +GI +P K YVW DA IGY+++L E G + +F +F +
Sbjct: 233 SITRTDLDWGIPVPGDPGKVIYVWFDALIGYISALGELAEIGDDE-------DFKKFWPA 285
Query: 308 PNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPL 367
+TE HFIGKDI FH ++WPA+L +G LP IF HGF+T+ G+KMSKS + P
Sbjct: 286 DDTELVHFIGKDIIRFHAVYWPAMLMAAGLPLPTRIFAHGFLTLEGQKMSKSRGNVVDPD 345
Query: 368 YYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKY 427
L+ + LRYY+A +L + D DF+ + F+ VN+DL K N+A+R+ FI KY
Sbjct: 346 ELLEQ-YGVDALRYYLAREL-PEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKY 403
Query: 428 FKG----YLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQ 483
F G +D + L+ R ++ + E F K L ++ + N + D+
Sbjct: 404 FDGVVPAAGAPDLEEDEE-LLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDE 462
Query: 484 NKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI----SPLQW 539
PWKLAK + E+L + LE R+L I L P +P A+ + L + W
Sbjct: 463 QAPWKLAKED-KRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDARNFTW 521
Query: 540 INIFTPLTQNHKINKYRHLMTRVDKNIVDNLLKN 573
+ PL HK+ L R+++ ++ L++
Sbjct: 522 LGARQPLLPGHKLGPPEPLFPRIEEEAIEELIEA 555
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
This model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain [Protein synthesis, tRNA aminoacylation].
Length = 530
Score = 445 bits (1147), Expect = e-151
Identities = 194/555 (34%), Positives = 291/555 (52%), Gaps = 30/555 (5%)
Query: 14 IFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIA 73
I +TTALPYANG+ H+GH I AD++ R++ ++ V F+C D HG I +
Sbjct: 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYE-----VLFVCGTDEHGTKIELK 55
Query: 74 AEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLII 133
AE+ G+TPKE ++ K I FD + T E+ ++VQKI+ L I
Sbjct: 56 AEQEGLTPKELVDKYHEEFKDDWKWLNISFDRFIRTTDEEHKEIVQKIFQKLKEN-GYIY 114
Query: 134 NKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGT 193
K+I Q + P +FLPDRY++G CP C ++D GD CE C PT+LINP + G
Sbjct: 115 EKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLEPTELINPRCKICGA 174
Query: 194 KPIIKSSKHFFFKLSDKRCIDFLRKW---AIHDKRLQPEIVNKIKEWLEKDNKFNDWDIS 250
KP ++ S+H+FF+LS L +W + NK + WL+ D I+
Sbjct: 175 KPELRDSEHYFFRLS--AFEKELEEWIRKNPESGSPASNVKNKAQNWLK--GGLKDLAIT 230
Query: 251 RDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNT 310
RD Y+GI +PN K YVW DA IGY++SL G + + + N DE +
Sbjct: 231 RDLVYWGIPVPNDPNKVVYVWFDALIGYISSLG---ILSGDTEDWKKWWNNDE-----DA 282
Query: 311 EQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYL 370
E HFIGKDI FH ++WPA+L G LP +F HG++T+ G KMSKS + P L
Sbjct: 283 ELIHFIGKDIVRFHTIYWPAMLMGLGLPLPTQVFSHGYLTVEGGKMSKSLGNVVDPSDLL 342
Query: 371 KIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKG 430
+ LRYY+ + +D DF+ + F+ VN+DL K N+ +R+ FI+KYF G
Sbjct: 343 A-RFGADILRYYLLKER-PLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKYFNG 400
Query: 431 YLNMKWVKDN--DTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWK 488
L + + D L + I + E+ F K L +++ + N + D+NKPW+
Sbjct: 401 VLPSEDITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENKPWE 460
Query: 489 LAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLTQ 548
L K + +L ++ + R+L+I L PI+P L++ + FLN L+W L +
Sbjct: 461 LFKQS---PRLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNFE-LEWDFKLKLL-E 515
Query: 549 NHKINKYRHLMTRVD 563
HK+NK L ++++
Sbjct: 516 GHKLNKAEPLFSKIE 530
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M). This family
includes methionyl tRNA synthetases.
Length = 388
Score = 413 bits (1063), Expect = e-141
Identities = 150/409 (36%), Positives = 220/409 (53%), Gaps = 22/409 (5%)
Query: 14 IFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIA 73
+TTALPY NG HIGH+ I AD++ R+ ++ V F+ D HG I +A
Sbjct: 1 FLITTALPYVNGPPHIGHLYTTIPADVYARYLRLR-----GYDVLFVTGTDEHGTKIELA 55
Query: 74 AEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLII 133
AEK G+TP+E ++ K+ F I FD++ T S + +LVQ+ + LY K I
Sbjct: 56 AEKEGVTPQELVDRYHEEFKELFKKFNISFDDFIRTTSERHKELVQEFFLKLYEK-GDIY 114
Query: 134 NKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGT 193
+ ++ FLPDRY++G CP C ++D GD CE C PT+LINP S +SG+
Sbjct: 115 EGEYEGWYCVSDERFLPDRYVEGTCPYCGSEDARGDQCEVCGRPLEPTELINPRSAISGS 174
Query: 194 KPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKI-KEWLEKDNKFNDWDISRD 252
P +K +H+FF+LS + D L +W + P VN++ WL+ D I+RD
Sbjct: 175 TPELKEEEHYFFRLSKFQ--DKLLEWIKENPDEPPSNVNEVVLSWLK--EGLKDLSITRD 230
Query: 253 APYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQ 312
+ GI +P K YVW DA IGY+++ K G +K+ + D P+TE
Sbjct: 231 LDW-GIPVPGDPGKVIYVWFDALIGYISATKYLS---GNPEKWKKFWADD-----PDTEI 281
Query: 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKI 372
HFIGKDI FH ++WPA+L +G LP +F HG++T+ G KMSKS + P L
Sbjct: 282 VHFIGKDIIRFHAIYWPAMLMAAGLPLPTQVFAHGWLTVEGGKMSKSRGNVVDPDELLDR 341
Query: 373 GMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSS 421
+ LRYY+A + +D DF+ + F+ VNS+L N+ +R+
Sbjct: 342 -YGVDALRYYLAR-EAPEGKDGDFSWEDFVERVNSELANDLGNLVNRTL 388
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
synthetases. Methionine tRNA synthetase (MetRS)
catalytic core domain. This class I enzyme aminoacylates
the 2'-OH of the nucleotide at the 3' of the appropriate
tRNA. MetRS, which consists of the core domain and an
anti-codon binding domain, functions as a monomer.
However, in some species the anti-codon binding domain
is followed by an EMAP domain. In this case, MetRS
functions as a homodimer. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. As a result of a deletion event, MetRS has a
significantly shorter core domain insertion than IleRS,
ValRS, and LeuR. Consequently, the MetRS insertion
lacks the editing function.
Length = 319
Score = 294 bits (755), Expect = 1e-95
Identities = 110/386 (28%), Positives = 165/386 (42%), Gaps = 69/386 (17%)
Query: 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMI 72
++ +TTALPY NG H+GH+ + AD++ R+Q + + V F+ D HG I
Sbjct: 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRL-----RGYDVLFVTGTDEHGTKIEQ 55
Query: 73 AAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLI 132
AE+ G+TP+E + K I FD + T S + ++VQ+ + LY I
Sbjct: 56 KAEEEGVTPQELCDKYHEIFKDLFKWLNISFDYFIRTTSPRHKEIVQEFFKKLYEN-GYI 114
Query: 133 INKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSG 192
+ + FLP
Sbjct: 115 YEGEYEGLYCVSCERFLP------------------------------------------ 132
Query: 193 TKPIIKSSKHFFFKLSDKRCIDFLRKW-AIHDKRLQPEIV-NKIKEWLEKDNKFNDWDIS 250
+ +H+FF+LS + D L +W + + PE N++ WL+ D I+
Sbjct: 133 ---EWREEEHYFFRLSKFQ--DRLLEWLEKNPDFIWPENARNEVLSWLK--EGLKDLSIT 185
Query: 251 RDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNT 310
RD +GI +P K YVW DA IGY+++ YNE +
Sbjct: 186 RDLFDWGIPVPLDPGKVIYVWFDALIGYISATGY----------YNEEWGNSWWWKDGWP 235
Query: 311 EQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYL 370
E HFIGKDI FH ++WPA+L +G LP I HG++T+ GKKMSKS + P L
Sbjct: 236 ELVHFIGKDIIRFHAIYWPAMLLGAGLPLPTRIVAHGYLTVEGKKMSKSRGNVVDPDDLL 295
Query: 371 KIGMNPEWLRYYIASKLNNKIEDIDF 396
+ + LRYY+ + +D DF
Sbjct: 296 ERY-GADALRYYLLRERPEG-KDSDF 319
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
Length = 511
Score = 262 bits (671), Expect = 1e-80
Identities = 151/571 (26%), Positives = 260/571 (45%), Gaps = 81/571 (14%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
++ ++TT + Y NG+ HIGH + AD+ RF+ ++ G V+F+ D HG I
Sbjct: 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLR---GYD--VFFLTGTDEHGQKIQ 55
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
AE+AG++P+E + S+ K+ + I +D++ T + + VQ+I+ L
Sbjct: 56 RKAEEAGISPQELADRNSAAFKRLWEALNISYDDFIRTTDPRHKEAVQEIFQRLLAN--- 112
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQY-GDFCECCSSIYTPTKLINP--YS 188
G+ I +Y G +C C YT ++LI
Sbjct: 113 ------------------------GD--IY--LGKYEGWYCVRCEEFYTESELIEDGYRC 144
Query: 189 ILSGTKPIIKSSKHFFFKLSDKRCIDFLRK-WAIHDKRLQP-----EIVNKIKEWLEKDN 242
+G + +FF+LS D L + + + +QP E+++ +K L+
Sbjct: 145 PPTGAPVEWVEEESYFFRLSKY--QDKLLELYEANPDFIQPASRRNEVISFVKSGLK--- 199
Query: 243 KFNDWDISR---DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELR 299
D ISR D GI +P + YVW DA YL +L G P +
Sbjct: 200 ---DLSISRTNFDW---GIPVPGDPKHVIYVWFDALTNYLTAL------GYPDDEELLAE 247
Query: 300 NFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKS 359
F+++ P H IGKDI FH ++WPA L +G LP +F HGF+T++G+KMSKS
Sbjct: 248 LFNKYW--PADV--HLIGKDILRFHAVYWPAFLMAAGLPLPKRVFAHGFLTLDGEKMSKS 303
Query: 360 NKIGISPLYYL-KIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIAS 418
I P + + G++ +RY++ ++ +D DF+ ++FI+ +N+DL N+A
Sbjct: 304 LGNVIDPFDLVDEYGVDA--VRYFLLREIPFG-QDGDFSREAFINRINADLANDLGNLAQ 360
Query: 419 RSSSFIEKYFKGYL--NMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNF 476
R+ S I K F G + + ++ L + ++ +N F+K L ++
Sbjct: 361 RTLSMIAKNFDGKVPEPGALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALVRA 420
Query: 477 INIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP 536
N + D+ PW LAK + E+L + LLE R + + L+P++P LA + L +
Sbjct: 421 ANKYIDEQAPWSLAKTD--PERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGVEE 478
Query: 537 LQWINI----FTPLTQNHKINKYRHLMTRVD 563
+ + + L + K + R++
Sbjct: 479 DENRDFAALSWGRLAPGTTLPKPEPIFPRLE 509
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 207 bits (530), Expect = 5e-59
Identities = 159/583 (27%), Positives = 256/583 (43%), Gaps = 112/583 (19%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
++TT + Y NG+ HIGH I AD R++ +Q G V+F+ D HG I AA
Sbjct: 7 YITTPIYYPNGKPHIGHAYTTIAADALARYKRLQ---GY--DVFFLTGTDEHGQKIQQAA 61
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134
EKAG TP+E+++ IS+ K+ I +D + T + +VQKI++ LY +
Sbjct: 62 EKAGKTPQEYVDEISAGFKELWKKLDISYDKFIRTTDERHKKVVQKIFEKLYEQG----- 116
Query: 135 KKINQFFDPIKNIFLPDRYIKGECPICNAKDQY-GDFCECCSSIYTPTKLIN-PYSILSG 192
D Y KGE Y G +C C + +T ++L++ G
Sbjct: 117 ----------------DIY-KGE---------YEGWYCVSCETFFTESQLVDGGKCPDCG 150
Query: 193 TKPIIKSSKHFFFKLSDKRCIDFLRKW-AIHDKRLQPE------IVNKIKEWLEKDNKFN 245
+ + + +FF++S + D L ++ + +QPE I N IK LE
Sbjct: 151 REVELVKEESYFFRMSKYQ--DRLLEYYEENPDFIQPESRKNEMINNFIKPGLE------ 202
Query: 246 DWDISRDAPYFGIKIPNTLEKY-FYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEF 304
D ISR + +GI +P K+ YVW+DA + Y+ +L G ++ F +F
Sbjct: 203 DLSISRTSFDWGIPVPFD-PKHVVYVWIDALLNYITAL------GYGS---DDDELFKKF 252
Query: 305 ISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKS----- 359
P H +GKDI FH ++WP +L G LP +F HG+ + KMSKS
Sbjct: 253 W--PADV--HLVGKDILRFHAIYWPIMLMALGLPLPKKVFAHGWWLMKDGKMSKSKGNVV 308
Query: 360 ------NKIGISPL-YYLKIGMNPEWLRYYIASKLNNKIE-----DIDFNSQSFISCVNS 407
++ G+ L YYL LR E D DF+ ++ + +NS
Sbjct: 309 DPEELVDRYGLDALRYYL--------LR-----------EVPFGSDGDFSPEALVERINS 349
Query: 408 DLIGKYINIASRSSSFIEKYFKGYLNMKWVK---DNDTFLSKLRVVSSSIQKYYENRNFN 464
DL N+ +R+ + I KYF G + D + ++ + ++ E F+
Sbjct: 350 DLANDLGNLLNRTVAMINKYFDGEIPAPGNVTEFDEE-LIALAEETLKNYEELMEELQFS 408
Query: 465 KVLYIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNL 524
+ L V + + N + D+ PW LAK+ E+L + L E+ R + + L P +P
Sbjct: 409 RALEEVWKLISRANKYIDETAPWVLAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPET 468
Query: 525 AKSVETFLNISP--LQW--INIFTPLTQNHKINKYRHLMTRVD 563
+K + L + W + + L K+ K L R+D
Sbjct: 469 SKKIFEQLGLEEELTSWESLLEWGGLPAGTKVAKGEPLFPRID 511
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 168 bits (427), Expect = 2e-44
Identities = 147/567 (25%), Positives = 240/567 (42%), Gaps = 91/567 (16%)
Query: 12 RRIFVTTALPYANGELHIGHIME-YIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI 70
R I +T+ALPY N H+G+I+ + AD++ R+ ++ N +IC D +G A
Sbjct: 17 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYN-----AIYICGTDEYGTAT 71
Query: 71 MIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAK 130
A + TPKE + + K+ D F I FD + T + + ++ Q I+ L
Sbjct: 72 ETKALEENCTPKEICDKYHAIHKEVYDWFDISFDKFGRTSTPQQTEICQAIFKKLMENNW 131
Query: 131 LIINKKINQFFDPIKNIFLPDRYIKGECPI--CNAKDQYGDFCECCSSIYTPTKLINPYS 188
L N + Q + FL DR ++G CP CN GD CE C + PT+LI+P
Sbjct: 132 LSENT-MQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEKCGKLLNPTELIDPKC 190
Query: 189 ILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWD 248
+ P I+ + H F +L P + +K+ E++ + + W
Sbjct: 191 KVCKNTPRIRDTDHLFLEL--------------------PLLKDKLVEYINETSVAGGWS 230
Query: 249 -------------------ISRDAPYFGIKIPNTLEKY----FYVWLDAPIGYLASLKNF 285
I+RD + G+ +P LEKY FYVW DAPIGY++ +
Sbjct: 231 QNAIQTTNAWLRDGLKPRCITRDLKW-GVPVP--LEKYKDKVFYVWFDAPIGYVSITACY 287
Query: 286 ---FEKGGPKKKYNELRNFDEFISSP-NTEQYHFIGKDIFYFHILFWPAILKFSGRK--L 339
+EK + +P N E Y F+GKD FH + +P+ L +G +
Sbjct: 288 TPEWEK---------------WWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTM 332
Query: 340 PNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIE--DIDFN 397
I V ++ G K SKS +G+ + E RYY+ L N+ E D F
Sbjct: 333 MKTISVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYL---LTNRPEVSDTLFT 389
Query: 398 SQSFISCVNSDLIGKYINIASRSSSFIEK----YFKGYLNMKWVKDNDTFLSKL-RVVSS 452
+ +NS+L+ N +R SFI K + + ++ KL V
Sbjct: 390 WADLQAKLNSELLNNLGNFINRVLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGK 449
Query: 453 SIQKYYENRNFNKV---LYIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEA 509
+++Y E K+ L + ++ N + +++ WKL K + + +
Sbjct: 450 LVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKED--KPSCAIVVKTSVGL 507
Query: 510 FRILTIYLKPILPNLAKSVETFLNISP 536
+L L+P +P+ +K V LN+ P
Sbjct: 508 VYLLACLLEPFMPSFSKEVLKQLNLPP 534
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase.
Length = 616
Score = 153 bits (387), Expect = 8e-40
Identities = 140/539 (25%), Positives = 237/539 (43%), Gaps = 69/539 (12%)
Query: 16 VTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAE 75
+TT L Y N H+G I AD RFQ + ++V FI D HG I +A
Sbjct: 73 LTTPLYYVNAPPHMGSAYTTIAADSIARFQRLL-----GKKVIFITGTDEHGEKIATSAA 127
Query: 76 KAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINK 135
G P E + IS + + I +D + T ++ +V++ Y A++ N
Sbjct: 128 ANGRNPPEHCDIISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKEFY------ARVFANG 181
Query: 136 KINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKP 195
I + D G +C C +L+ P
Sbjct: 182 DIYR------------------------ADYEGLYCVNCEEYKDEKELLENNCCPVHQMP 217
Query: 196 II-KSSKHFFFKLS--DKRCIDFLRKWAIHDKRLQPEI-VNKIKEWLEKDNKFNDWDISR 251
+ + ++FF LS K D L A + + +QP +N+++ W++ + D+ ISR
Sbjct: 218 CVARKEDNYFFALSKYQKPLEDIL---AQNPRFVQPSYRLNEVQSWIK--SGLRDFSISR 272
Query: 252 DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTE 311
+GI +P+ ++ YVW DA +GY+++L + N+ +N + +S
Sbjct: 273 ALVDWGIPVPDDDKQTIYVWFDALLGYISALT----------EDNKQQNLETAVSFGWPA 322
Query: 312 QYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLK 371
H IGKDI FH ++WPA+L +G +LP +F HGF+T +G KM KS + P + L
Sbjct: 323 SLHLIGKDILRFHAVYWPAMLMSAGLELPKMVFGHGFLTKDGMKMGKSLGNTLEP-FELV 381
Query: 372 IGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGY 431
P+ +RY+ ++ D D++ FI VN+ L N+ +R+ ++K +
Sbjct: 382 QKFGPDAVRYFFLREVEFG-NDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCEST 440
Query: 432 LNMKWVKDNDTFLSKLRVVSSSIQKY-------YENRNFNKVLYIVIEQTNFINIFFDQN 484
L + T ++ + +++K YEN + + V+E N N + DQ
Sbjct: 441 LVE-----DSTVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIGNAGNTYMDQR 495
Query: 485 KPWKLAKN-NIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINI 542
PW L K + E+ K +LE R++ + L PI P L+ + + L S Q+ +I
Sbjct: 496 APWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGYSEDQFNSI 554
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of
isoleucyl, leucyl, valyl and methioninyl tRNA
synthetases. Catalytic core domain of isoleucyl,
leucyl, valyl and methioninyl tRNA synthetases. These
class I enzymes are all monomers. However, in some
species, MetRS functions as a homodimer, as a result of
an additional C-terminal domain. These enzymes
aminoacylate the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. Enzymes in
this subfamily share an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids. MetRS has a significantly shorter
insertion, which lacks the editing function.
Length = 312
Score = 117 bits (294), Expect = 4e-29
Identities = 68/211 (32%), Positives = 92/211 (43%), Gaps = 30/211 (14%)
Query: 189 ILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWD 248
I GT P+ + + +FF + + + L K K + + N+++ WLE DW
Sbjct: 129 IYRGTHPVRIT-EQWFFDMPKFK--EKLLKALRRGKIVPEHVKNRMEAWLES---LLDWA 182
Query: 249 ISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSP 308
ISR Y+G +P E F VW D+ IG L SL EK K Y
Sbjct: 183 ISRQR-YWGTPLP---EDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPAD---------- 228
Query: 309 NTEQYHFIGKDIFYFHILFWPAILK-FSGRKLPNNIFVHGFMTIN-GKKMSKSNKIGISP 366
+H IGKDI FW +L G P N+ VHGF+ G+KMSKS I P
Sbjct: 229 ----WHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDP 284
Query: 367 LYYL-KIGMNPEWLRYYIASKLNNKIEDIDF 396
+ K G + LRYY+ S +DI
Sbjct: 285 SDVVEKYGADA--LRYYLTSLA-PYGDDIRL 312
Score = 88.2 bits (219), Expect = 4e-19
Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 20/131 (15%)
Query: 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMI 72
+ +VTT PYANG LH+GH + +I AD R++ M+ V F+ D HG I +
Sbjct: 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYE-----VPFLPGWDTHGLPIEL 55
Query: 73 AAEKAGM-------------TPKEFINNISSNRKKYLDGFYIKFD--NWYSTDSIENIDL 117
AE+ G PKEF+ +S K+ I +D + Y T E
Sbjct: 56 KAERKGGRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKA 115
Query: 118 VQKIYDTLYNK 128
V+ I+ LY K
Sbjct: 116 VELIFSRLYEK 126
>gnl|CDD|153411 cd07957, Anticodon_Ia_Met, Anticodon-binding domain of methionyl
tRNA synthetases. This domain is found in methionyl
tRNA synthetases (MetRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon (CAU). MetRS catalyzes the
transfer of methionine to the 3'-end of its tRNA.
Length = 129
Score = 100 bits (251), Expect = 4e-25
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 3/130 (2%)
Query: 405 VNSDLIGKYINIASRSSSFIEKYFKGYL--NMKWVKDNDTFLSKLRVVSSSIQKYYENRN 462
+NS+L N+ +R+ + KYF G + ++++ L + + + + E
Sbjct: 1 INSELANNLGNLVNRTLNMASKYFGGVVPEFGGLTEEDEELLEEAEELLEEVAEAMEELE 60
Query: 463 FNKVLYIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILP 522
F K L ++E N + D+ PWKLAK E+L + LLE RIL I L P +P
Sbjct: 61 FRKALEEIMELARAANKYIDETAPWKLAKEE-DPERLATVLYVLLELLRILAILLSPFMP 119
Query: 523 NLAKSVETFL 532
A+ + L
Sbjct: 120 ETAEKILDQL 129
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
synthetases. Leucyl tRNA synthetase (LeuRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. In Aquifex
aeolicus, the gene encoding LeuRS is split in two, just
before the KMSKS motif. Consequently, LeuRS is a
heterodimer, which likely superimposes with the LeuRS
monomer found in most other organisms. LeuRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements and thus differs between
prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
editing region hydrolyzes mischarged cognate tRNAs and
thus prevents the incorporation of chemically similar
amino acids.
Length = 314
Score = 59.2 bits (144), Expect = 2e-09
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 11/118 (9%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
++ PY +G LH+GH+ Y DI R++ MQ G V F DA G AA
Sbjct: 3 YILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQ---GY--NVLFPMGFDAFGLPAENAA 57
Query: 75 EKAGMTP----KEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNK 128
K G P + I + K+ GF + ++T E Q ++ LY K
Sbjct: 58 IKIGRDPEDWTEYNIKKMKEQLKRM--GFSYDWRREFTTCDPEYYKFTQWLFLKLYEK 113
Score = 39.2 bits (92), Expect = 0.005
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 322 YFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLK 371
+ H + + P + V G + + G+KMSKS ++P +K
Sbjct: 244 FNHKALFD--EGLVTDEPPKGLIVQGMVLLEGEKMSKSKGNVVTPDEAIK 291
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 933
Score = 52.6 bits (127), Expect = 5e-07
Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 38/203 (18%)
Query: 342 NIFVHGF-MTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQS 400
N+ HGF + G+KMSKS + P + + LR ++AS ++ ED+ F S
Sbjct: 588 NVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDK-YGADILRLWVAS--SDYWEDLRF-SDE 643
Query: 401 FISCVNSDLIGKYINIASRSSSFIEKYFKGYLN-MKWVKDNDTF----------LSKLRV 449
+ ++ K N + G L+ KD LS+L
Sbjct: 644 ILK-QVREVYRKIRNTYR--------FLLGNLDDFDPKKDAVLPEELRELDRWILSRLNS 694
Query: 450 VSSSIQKYYENRNFNKVL-----YIVIEQTNFINIFFDQNKP--WKLAKNNIYHEKLHKI 502
+ +++ YEN +F+KV+ ++ + +N+ + D K + A ++ ++
Sbjct: 695 LVKEVREAYENYDFHKVVRALMNFVSEDLSNW---YLDIIKDRLYTEAADS--PDRRAAQ 749
Query: 503 SSRLLEAFRILTIYLKPILPNLA 525
++ L + L L PILP A
Sbjct: 750 TT-LYHILKALVRLLAPILPFTA 771
Score = 46.4 bits (111), Expect = 4e-05
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK 76
PYANG +HIGH + I DI VR++ MQ G V ++ D HG I + EK
Sbjct: 58 PYANGNIHIGHALNKILKDIIVRYKTMQ---GYD--VPYVPGWDCHGLPIELKVEK 108
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
Length = 974
Score = 51.7 bits (124), Expect = 8e-07
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 25/107 (23%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI-------MIA 73
PYANG+LHIGH + I D R+Q +Q ++V+++ D HG I +
Sbjct: 41 PYANGDLHIGHALNKILKDFINRYQLLQ-----GKKVHYVPGWDCHGLPIELKVLQSLDQ 95
Query: 74 AEKAGMTP-----------KEFINNISSNRKKYLDGFYIKFDNWYST 109
+ +TP K+ ++ + K+Y G + ++N Y T
Sbjct: 96 EARKELTPIKLRAKAAKFAKKTVDTQRESFKRY--GVWGDWENPYLT 140
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 51.1 bits (123), Expect = 1e-06
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 11/121 (9%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
+ +V PY +G LH+GH+ Y D+ R++ MQ N V DA G
Sbjct: 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYN-----VLHPMGWDAFGLPAE 88
Query: 72 IAAEKAGMTPK----EFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYN 127
AA K G P I + K GF I + ++T E +Q + LY
Sbjct: 89 NAAIKIGTDPAKWTYYNIAYMKKQLKSL--GFSIDWRREFATCDPEYYKWIQWQFLKLYE 146
Query: 128 K 128
K
Sbjct: 147 K 147
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
synthetases. Valine amino-acyl tRNA synthetase (ValRS)
catalytic core domain. This enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. ValRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements. This editing region
hydrolyzes mischarged cognate tRNAs and thus prevents
the incorporation of chemically similar amino acids.
Length = 382
Score = 49.2 bits (118), Expect = 3e-06
Identities = 93/440 (21%), Positives = 145/440 (32%), Gaps = 131/440 (29%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMT 80
P G LH+GH + DI R++ M+ N V + D G A + EK
Sbjct: 10 PNVTGSLHMGHALNNTIQDIIARYKRMKGYN-----VLWPPGTDHAGIATQVVVEK--KL 62
Query: 81 PKEFINNISSNRKKYLD--------------------GFYIKFDNWYSTDSIENIDLVQK 120
E R+++L+ G + + Y T VQ+
Sbjct: 63 GIEGKTRHDLGREEFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQE 122
Query: 121 IYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICN---AKDQYGDFCECCSSI 177
+ LY K LI D + CP + E CS
Sbjct: 123 AFVRLYEKG-LIYR----------------DNRLVNWCPKLRTAISDI------EVCSRS 159
Query: 178 YTPTKLINPYSILSGTKPIIKSSKHFFFKLSD--KRCIDFLRKWAIHDKRLQPE-IVNKI 234
I P +F K+ D K+ ++ +++ I + PE + +
Sbjct: 160 GDV---IEPL-----------LKPQWFVKVKDLAKKALEAVKEGDI---KFVPERMEKRY 202
Query: 235 KEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYV-----WLDAPIGYLASLKNFFEKG 289
+ WLE DW ISR ++G +IP +Y W+ A A K E
Sbjct: 203 ENWLENI---RDWCISRQL-WWGHRIP-----AWYCKDGGHWVVAREEDEAIDKAAPEAC 253
Query: 290 GPKKK--------------------------YNELRNFDEFISSPNTEQYHFIGKDIFYF 323
P E ++ +F + G DI
Sbjct: 254 VPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKKFYPTSLLVT----GHDI--- 306
Query: 324 HILFWPA-----ILKFSGRKLPNNIFVHGFM-TINGKKMSKSNKIGISPLYYL-KIGMNP 376
I FW A LK +G+ +++HG + +G+KMSKS I PL + G +
Sbjct: 307 -IFFWVARMIMRGLKLTGKLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADA 365
Query: 377 EWLRYYIASKLNNKIEDIDF 396
LR+ +AS + DI+
Sbjct: 366 --LRFTLAS-AATQGRDINL 382
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA
synthetases. Isoleucine amino-acyl tRNA synthetases
(IleRS) catalytic core domain . This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. IleRS has an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids.
Length = 338
Score = 48.0 bits (115), Expect = 6e-06
Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 24/127 (18%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAG-- 78
PYANG H GH + I DI R++ MQ V D HG I + EK
Sbjct: 10 PYANGLPHYGHALNKILKDIINRYKTMQ-----GYYVPRRPGWDCHGLPIELKVEKELGI 64
Query: 79 --------MTPKEFINNISSNRKKYLD---------GFYIKFDNWYSTDSIENIDLVQKI 121
M EF +Y+D G ++ ++N Y T E ++ V +
Sbjct: 65 SGKKDIEKMGIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWV 124
Query: 122 YDTLYNK 128
+ L+ K
Sbjct: 125 FKQLHEK 131
Score = 35.3 bits (82), Expect = 0.070
Identities = 55/190 (28%), Positives = 76/190 (40%), Gaps = 45/190 (23%)
Query: 227 QPE-IVNKIKEWLEKDNKFNDWDISRDAPYFGIKIP----NTLEKY--------FYVWLD 273
PE + N+ WLE DW ISR Y+G IP + VW D
Sbjct: 174 IPEWVKNRFGNWLENRR---DWCISRQR-YWGTPIPVWYCEDCGEVLVRRVPDVLDVWFD 229
Query: 274 APIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFI--GKDIF--YFHILFWP 329
+ A L FE +F+E P FI G D +F+ L
Sbjct: 230 SGSMPYAQLHYPFEN----------EDFEE--LFP----ADFILEGSDQTRGWFYSLLLL 273
Query: 330 AILKFSGRKLP-NNIFVHGF-MTINGKKMSKSNKIGISPLYYL-KIGMNPEWLRYYIASK 386
+ F K P N+ VHGF + +G+KMSKS + P + K G + LR ++AS
Sbjct: 274 STALFG--KAPYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDKYGADA--LRLWVASS 329
Query: 387 LNNKIEDIDF 396
+ ED+ F
Sbjct: 330 -DVYAEDLRF 338
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase. The isoleucyl tRNA
synthetase (IleS) is a class I amino acyl-tRNA ligase
and is particularly closely related to the valyl tRNA
synthetase. This model may recognize IleS from every
species, including eukaryotic cytosolic and
mitochondrial forms [Protein synthesis, tRNA
aminoacylation].
Length = 861
Score = 47.8 bits (114), Expect = 1e-05
Identities = 58/205 (28%), Positives = 91/205 (44%), Gaps = 34/205 (16%)
Query: 342 NIFVHGF-MTINGKKMSKSNKIGISPLYYL-KIGMNPEWLRYYIASKLNNKIEDIDFNSQ 399
N+ HGF + G+KMSKS + PL + K G + LR Y+AS ++ ED+ F S
Sbjct: 597 NVITHGFTLDEKGRKMSKSLGNVVDPLKVINKYGADI--LRLYVAS--SDPWEDLRF-SD 651
Query: 400 SFISCVNSDLIGKYINIASRSSSFIEKY-----FKGYLNMKWVKDN---DTF-LSKLRVV 450
+ V KY I + F+ Y F N V+ D + LS+L +
Sbjct: 652 EILKQVVE----KYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEEDRWILSRLNSL 707
Query: 451 SSSIQKYYENRNFNKVL-----YIVIEQTNFINIFFDQNKP--WKLAKNNIYHEKLHKIS 503
+ + E NF+KVL +IV E +N+ + + + AK+N +K +
Sbjct: 708 VEEVNEALEKYNFHKVLRALQDFIVEELSNW---YIRIIRDRLYCEAKDN---DKRAAQT 761
Query: 504 SRLLEAFRILTIYLKPILPNLAKSV 528
+ L A L L P LP+ A+ +
Sbjct: 762 T-LYYALLTLVRLLAPFLPHTAEEI 785
Score = 47.4 bits (113), Expect = 2e-05
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK 76
PYANG +H+GH + I DI +R++ MQ G V D HG I EK
Sbjct: 45 PYANGSIHLGHALNKILKDIILRYKTMQ---GF--NVTRKPGWDTHGLPIEHKVEK 95
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 43.8 bits (104), Expect = 3e-04
Identities = 57/228 (25%), Positives = 91/228 (39%), Gaps = 41/228 (17%)
Query: 317 GKDIFYFHILFWPA-----ILKFSGRKLPNNIFVHGFMTI---NGKKMSKSNKIGISPLY 368
G DI I FW A L +G ++++HG + G+KMSKS I PL
Sbjct: 485 GHDI----IFFWVARMIMRGLHLTGEVPFKDVYIHGL--VRDEQGRKMSKSKGNVIDPLD 538
Query: 369 YL-KIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKY 427
+ K G + LR+ +AS L + DI+F+ + + + K N A+R F+
Sbjct: 539 VIDKYGADA--LRFTLAS-LASPGRDINFDEKRVEG--YRNFLNKLWN-ATR---FVLMN 589
Query: 428 FKGYLNMKWVKDNDT-----FLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFI-NIFF 481
+ LS+L + + +N F++ + FI N F
Sbjct: 590 LDDLGPDDLDLLALSLADRWILSRLNETVKEVTEALDNYRFDEAARALY---EFIWNDFC 646
Query: 482 DQNKPW--KLAKNNIYHEKLHKISSR--LLEAFRILTIYLKPILPNLA 525
D W +LAK +Y + K ++R L L L P +P +
Sbjct: 647 D----WYLELAKPRLYGGEEEKRAARATLYYVLDTLLRLLHPFMPFIT 690
Score = 38.4 bits (90), Expect = 0.010
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK 76
P G LH+GH + Y DI R++ M+ N V + D G A + EK
Sbjct: 42 PNVTGSLHMGHALNYTLQDILARYKRMRGYN-----VLWPPGTDHAGIATQVVVEK 92
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 43.3 bits (103), Expect = 4e-04
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYF-ICADDAHG 67
P +G LHIGH+ Y D R+Q M+ N V+F DD +G
Sbjct: 47 PTVSGSLHIGHVFSYTHTDFIARYQRMRGYN-----VFFPQGWDD-NG 88
Score = 32.1 bits (74), Expect = 1.0
Identities = 49/192 (25%), Positives = 71/192 (36%), Gaps = 48/192 (25%)
Query: 352 NGKKMSKSNKIGISPLYYL-KIGMNPEWLRYYIA-SKLNNKIEDIDFNSQSFISCVNSDL 409
+GKKMSKS ++P L K G + +RY+ A ++L D F+ + L
Sbjct: 530 DGKKMSKSKGNVVTPEELLEKYGADA--VRYWAASARLG---SDTPFDEKQVKI--GRRL 582
Query: 410 IGKYINIASRSSSFIEKYFKGYLNMKWVKDNDT------FLSKL-RVVSSSIQKYYENRN 462
+ K N + F + K L+KL +VV + + EN +
Sbjct: 583 LTKLWNASRFVLHFSADP-------EPDKAEVLEPLDRWILAKLAKVVEKAT-EALENYD 634
Query: 463 FNKVLYIVIEQTNFINIFFDQNKPWK--------LAKNNIY--HEKLHKISSR--LLEAF 510
F K L IE FF W L K+ Y E+ + S+R L
Sbjct: 635 FAKALE-EIES------FF-----WHVFCDDYLELVKSRAYGEDEEEEQKSARYTLYTVL 682
Query: 511 RILTIYLKPILP 522
L L P LP
Sbjct: 683 DTLLRLLAPFLP 694
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and
cytosolic family. The leucyl-tRNA synthetases belong
to two families so broadly different that they are
represented by separate models. This model includes
both archaeal and cytosolic eukaryotic leucyl-tRNA
synthetases; the eubacterial and mitochondrial forms
differ so substantially that some other tRNA ligases
score higher by this model than does any eubacterial
LeuS [Protein synthesis, tRNA aminoacylation].
Length = 938
Score = 42.5 bits (100), Expect = 6e-04
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAA 69
D + F+T A PY NG +H GH + ++ RF+ M+ N V F G
Sbjct: 23 DREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKN-----VLFPLGFHVTGTP 77
Query: 70 IMIAAEK 76
I+ AE
Sbjct: 78 ILGLAEL 84
Score = 34.4 bits (79), Expect = 0.19
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 317 GKDIFYFHILFW----PAILKFSGRKLPNNIFVHGFMTINGKKMSKS 359
GKD+ H+ F+ AI F + P I V+G++ + GKKMSKS
Sbjct: 580 GKDLIPNHLTFYIFHHVAI--FPEKFWPRGIVVNGYVMLEGKKMSKS 624
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar to
be included.
Length = 606
Score = 40.8 bits (96), Expect = 0.002
Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 24/127 (18%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK---- 76
P A G LHIGH + DI +R++ MQ G V ++ D HG EK
Sbjct: 32 PNATGLLHIGHALNKTLKDIVIRYKRMQ---GFD--VLWVPGWDHHGLPTEQKVEKKLGI 86
Query: 77 ------AGMTPKEFINNISSNRKKYLD---------GFYIKFDNWYSTDSIENIDLVQKI 121
+ ++F + +Y D G +D Y T V ++
Sbjct: 87 KGKKDRHKLGREKFREKCREWKMEYADEIRSQFKRLGVSGDWDREYFTLDPGLEAAVWRV 146
Query: 122 YDTLYNK 128
+ L++K
Sbjct: 147 FVRLHDK 153
Score = 35.4 bits (82), Expect = 0.094
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 342 NIFVHGFMT-INGKKMSKSNKIGISPLYYL-KIGMNPEWLRYYIAS 385
N+ VHG + G+KMSKS I PL + K G + LR ++AS
Sbjct: 553 NVLVHGLVRDEQGRKMSKSLGNVIDPLDVIDKYGA--DALRLWLAS 596
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.
Length = 961
Score = 40.3 bits (95), Expect = 0.003
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQ 48
PYANG +HIGH + I D+ VR + M
Sbjct: 63 PYANGNIHIGHALNKILKDVIVRSKQML 90
Score = 29.1 bits (66), Expect = 7.1
Identities = 48/234 (20%), Positives = 87/234 (37%), Gaps = 78/234 (33%)
Query: 341 NNIFVHGF-MTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIAS-------------- 385
+ HGF + G+KMSKS +SP +K + LR ++AS
Sbjct: 615 KAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIKQ-SGADILRLWVASVDYSDDQRIGKEIL 673
Query: 386 --------KLNNKIEDI-----DFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYL 432
KL N + + F+ + + Y ++ +E+Y
Sbjct: 674 KQVSETYRKLRNTLRWLLGNLAHFD--------PGEDVVAYADLPE-----LERYM---- 716
Query: 433 NMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINI-----FFDQNKPW 487
L +L + +++ Y+ +F ++ ++ NF+N+ +FD
Sbjct: 717 -----------LHRLNELDGLVREAYDAYDFKRIYKALV---NFVNVDLSAFYFD----- 757
Query: 488 KLAKNNIYHEKLHKISSR-----LLEAFRILTIYLKPILPNLAKSVETFLNISP 536
+ K+ +Y + + R E F LT +L PILP A+ E +L P
Sbjct: 758 -IRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFTAE--EAWLYRYP 808
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 40.1 bits (95), Expect = 0.003
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK---- 76
PYANG++HIGH + I DI V+ + M G ++ D HG I + EK
Sbjct: 58 PYANGDIHIGHALNKILKDIIVKSKTMS---GF--DAPYVPGWDCHGLPIELKVEKKLGK 112
Query: 77 --AGMTPKEF 84
++ EF
Sbjct: 113 KGKKLSAAEF 122
Score = 28.9 bits (66), Expect = 8.7
Identities = 49/215 (22%), Positives = 77/215 (35%), Gaps = 76/215 (35%)
Query: 346 HGFMTI--NGKKMSKS--NKIGISPLYYLKIGMNP---EWLRYYIASKLNNKIEDIDFNS 398
HGF T+ G+KMSKS N I P + + + LR ++AS D+
Sbjct: 582 HGF-TVDGKGRKMSKSLGN--VIDP---QDV-IKKYGADILRLWVAS--------TDY-- 624
Query: 399 QSFISCVNSDL-IGKYINIASRSSSFIEKYFK---------GYLN-MKWVKDNDTF---- 443
+ D+ I I + + E Y + G LN KD +
Sbjct: 625 -------SGDVRISD--EILKQVA---EAYRRIRNTLRFLLGNLNDFDPAKDAVPYEELL 672
Query: 444 ------LSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFI-----NIFFDQNKPWKLAKN 492
L +L + I + YEN +F+KV + NF + D + K+
Sbjct: 673 ELDRWALHRLAELQEEILEAYENYDFHKVYQKLH---NFCSVDLSAFYLD------IIKD 723
Query: 493 NIYHEKLHKISSR-----LLEAFRILTIYLKPILP 522
+Y + ++ R L L +L PIL
Sbjct: 724 RLYTDAADSLARRSAQTALYHILEALVRWLAPILS 758
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 39.5 bits (93), Expect = 0.005
Identities = 47/219 (21%), Positives = 87/219 (39%), Gaps = 42/219 (19%)
Query: 317 GKDIFYFHILFW----PAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLK- 371
GKD+ H+ F+ AI F K P I V+GF+ + GKKMSKS + L+
Sbjct: 537 GKDLIPNHLTFFIFNHVAI--FPEEKWPRGIVVNGFVLLEGKKMSKSKG----NVIPLRK 590
Query: 372 -IGMN-PEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFK 429
I + +R Y+ S ++D D+ + S + ++ +A +
Sbjct: 591 AIEEYGADVVRLYLTS-SAELLQDADWREKEVES--VRRQLERFYELAKELIEIGGEEEL 647
Query: 430 GYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWKL 489
+++ KW LS+L + + E+ + F++
Sbjct: 648 RFID-KW------LLSRLNRIIKETTEAMESFQTRDAV---------QEAFYE------- 684
Query: 490 AKNNI--YHEKLHKISSRLL-EAFRILTIYLKPILPNLA 525
N++ Y ++ + ++++L E I L P P+LA
Sbjct: 685 LLNDLRWYLRRVGEANNKVLREVLEIWIRLLAPFTPHLA 723
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 37.2 bits (87), Expect = 0.022
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 334 FSGRKLPNNIFVH-GFMTINGKKMSKS--NKIGISPLYYLKIGMNPEWLRYYIASK 386
+G K ++H GF+ I+G+KMSKS N I + L LK +PE LR ++ S
Sbjct: 246 ATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDL--LKK-YDPEVLRLFLLSS 298
>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 37.0 bits (87), Expect = 0.026
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 6/47 (12%)
Query: 342 NIFVH-GFMTINGKKMSKS--NKIGISPLYYLKIGMNPEWLRYYIAS 385
N ++H GF+T+NG+KMSKS N I L LK +PE LR+++ S
Sbjct: 252 NYWMHNGFVTVNGEKMSKSLGNFFTIRDL--LK-KYDPEVLRFFLLS 295
>gnl|CDD|216786 pfam01921, tRNA-synt_1f, tRNA synthetases class I (K). This family
includes only lysyl tRNA synthetases from prokaryotes.
Length = 357
Score = 36.4 bits (85), Expect = 0.032
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 352 NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDF 396
G KMS S I+ +L+ PE LR+ + K + +DF
Sbjct: 276 GGGKMSSSKGNVITIEDWLEY-APPESLRFLMFRVKPKKAKRLDF 319
>gnl|CDD|224302 COG1384, LysS, Lysyl-tRNA synthetase (class I) [Translation,
ribosomal structure and biogenesis].
Length = 521
Score = 36.2 bits (84), Expect = 0.046
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 344 FVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDF 396
FV+ ++ + G KMS S IS +L++ PE LRY IA N+ D DF
Sbjct: 265 FVYEWILLKGGGKMSSSKGNVISLSDWLEV-APPEVLRYLIARTKPNRHIDFDF 317
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches
[Protein synthesis, tRNA aminoacylation].
Length = 842
Score = 35.9 bits (83), Expect = 0.067
Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Query: 20 LPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGM 79
PY +G LH+GH+ Y D+ R+ M+ N V DA G AA K G+
Sbjct: 37 FPYPSGALHMGHVRNYTITDVLSRYYRMKGYN-----VLHPIGWDAFGLPAENAAIKRGI 91
Query: 80 TPKEFINNISSNRKKYLD--GFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKI 137
P ++ +N KK L GF +D +T E Q I+ L+ + L K+
Sbjct: 92 HPAKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELF-EKGLAYVKEA 150
Query: 138 NQFFDPI 144
+ + P
Sbjct: 151 DVNWCPN 157
>gnl|CDD|107347 cd06352, PBP1_NPR_GC_like, Ligand-binding domain of membrane
guanylyl-cyclase receptors. Ligand-binding domain of
membrane guanylyl-cyclase receptors. Membrane guanylyl
cyclases (GC) have a single membrane-spanning region and
are activated by endogenous and exogenous peptides. This
family can be divided into three major subfamilies: the
natriuretic peptide receptors (NPRs), sensory
organ-specific membrane GCs, and the
enterotoxin/guanylin receptors. The binding of peptide
ligands to the receptor results in the activation of the
cytosolic catalytic domain. Three types of NPRs have
been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/
GC-B, and NPR-C. In addition, two of the GCs, GC-D and
GC-G, appear to be pseudogenes in humans. Atrial
natriuretic peptide (ANP) and brain natriuretic peptide
(BNP) are produced in the heart, and both bind to the
NPR-A. NPR-C, also termed the clearance receptor, binds
each of the natriuretic peptides and can alter
circulating levels of these peptides. The ligand binding
domain of the NPRs exhibits strong structural similarity
to the type I periplasmic binding fold protein family.
Length = 389
Score = 35.4 bits (82), Expect = 0.074
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 16 VTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAE 75
+ AL N L + H++ + QD + ++ +C +++AA
Sbjct: 158 LEAALREFN--LTVSHVVFMEDNSGAEDLLEILQDIKRRSRIIIMCGSSEDVRELLLAAH 215
Query: 76 KAGMTPKEFI 85
G+T +++
Sbjct: 216 DLGLTSGDYV 225
>gnl|CDD|153414 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding domain of
bacterial and eukaryotic mitochondrial isoleucyl tRNA
synthetases. This domain is found in isoleucyl tRNA
synthetases (IleRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. This family includes
bacterial and eukaryotic mitochondrial members. IleRS
catalyzes the transfer of isoleucine to the 3'-end of
its tRNA.
Length = 180
Score = 34.4 bits (80), Expect = 0.084
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 19/93 (20%)
Query: 443 FLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFIN-----IFFDQNKPWKLAKNNIYHE 497
L +L + +++ YEN F+KV + NF + D + K+ +Y +
Sbjct: 49 ALHRLNELIKEVREAYENYEFHKVYQALN---NFCTVDLSAFYLD------IIKDRLYCD 99
Query: 498 KLHKISSR-----LLEAFRILTIYLKPILPNLA 525
+ R L L L PILP A
Sbjct: 100 AKDSLERRSAQTVLYHILDALLKLLAPILPFTA 132
>gnl|CDD|219767 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA. This
domain is found mainly hydrophobic tRNA synthetases. The
domain binds to the anticodon of the tRNA.
Length = 148
Score = 33.5 bits (77), Expect = 0.11
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Query: 443 FLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKI 502
LS+L + + + YE FN + E F N D +L+K+ +Y E
Sbjct: 4 ILSRLNKLIKEVTEAYEKYRFNTAASALYE--FFWNDLSDWYL--ELSKDRLYGEAPDSD 59
Query: 503 SSR---LLEAFRILTIYLKPILPNLA 525
S L E L L P +P +
Sbjct: 60 RSAQTVLYEVLETLLRLLAPFMPFIT 85
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding.
Length = 213
Score = 34.1 bits (79), Expect = 0.11
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 342 NIFVH-GFMTINGKKMSKS--NKIGISPLYYLKIGMNPEWLRYYIASK 386
++H G +TI+G+KMSKS N I + +PE LR + S
Sbjct: 160 RYWLHTGHLTIDGEKMSKSLGNFITVRD---ALKKYDPEVLRLALLSS 204
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated.
Length = 805
Score = 35.1 bits (82), Expect = 0.12
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 20 LPYANGELHIGHIMEYIQADIWVRFQCMQQDN 51
PY +G LH+GH+ Y D+ R++ MQ N
Sbjct: 40 FPYPSGGLHMGHVRNYTIGDVIARYKRMQGYN 71
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA
synthetase (ValS) is a class I amino acyl-tRNA ligase
and is particularly closely related to the isoleucyl
tRNA synthetase [Protein synthesis, tRNA
aminoacylation].
Length = 861
Score = 35.0 bits (81), Expect = 0.12
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK 76
P G LHIGH + + DI R++ M+ N V ++ D G A + EK
Sbjct: 42 PNVTGSLHIGHALNWSIQDIIARYKRMKGYN-----VLWLPGTDHAGIATQVKVEK 92
Score = 30.4 bits (69), Expect = 2.9
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 25/168 (14%)
Query: 317 GKDIFYFHILFWPA-----ILKFSGRKLPNNIFVHGFM-TINGKKMSKSNKIGISPLYYL 370
G DI I FW A L +G+ +++HG + G+KMSKS I PL +
Sbjct: 485 GYDI----IFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVI 540
Query: 371 -KIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFK 429
K G + LR+ +AS L +DI+F+ + S + + K N ASR F+
Sbjct: 541 EKYGADA--LRFTLAS-LVTPGDDINFDWKRVES--ARNFLNKLWN-ASR---FVLMNLS 591
Query: 430 GYLNMKWVKDNDT-----FLSKLRVVSSSIQKYYENRNFNKVLYIVIE 472
L + ++ + LSKL ++K + F + + E
Sbjct: 592 DDLELSGGEEKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYE 639
>gnl|CDD|234829 PRK00750, lysK, lysyl-tRNA synthetase; Reviewed.
Length = 510
Score = 34.4 bits (80), Expect = 0.17
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 348 FMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYI 383
F+ G+K+SKS I+ +L+ PE LR ++
Sbjct: 273 FLDKKGEKISKSKGNVITIEDWLEY-APPESLRLFM 307
>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic
domain. This family includes only cysteinyl tRNA
synthetases.
Length = 301
Score = 33.9 bits (78), Expect = 0.21
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 342 NIFVH-GFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASK 386
++H G + I G+KMSKS ++ LK +P LRY++ S
Sbjct: 239 KYWLHNGHLMIEGEKMSKSLGNFLTIRDVLKR-YDPRILRYFLLSV 283
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 34.1 bits (78), Expect = 0.21
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 14/84 (16%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI------MIAA 74
P G LH+GH M DI VR+ M K R +I D G A M+A+
Sbjct: 97 PNVTGSLHMGHAMFVTLEDIMVRYNRM-----KGRPTLWIPGTDHAGIATQLVVEKMLAS 151
Query: 75 E---KAGMTPKEFINNISSNRKKY 95
E + + EF + ++KY
Sbjct: 152 EGIKRTDLGRDEFTKRVWEWKEKY 175
>gnl|CDD|173900 cd00674, LysRS_core_class_I, catalytic core domain of class I
lysyl tRNA synthetase. Class I lysyl tRNA synthetase
(LysRS) catalytic core domain. This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. The class I LysRS is found only in archaea and
some bacteria and has evolved separately from class II
LysRS, as the two do not share structural or sequence
similarity.
Length = 353
Score = 32.3 bits (74), Expect = 0.61
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 344 FVHGFMTINGK-KMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDF 396
++ F+ + G KMS S I+P +L++ PE LRY A + N + I F
Sbjct: 263 VMYEFIGLKGGGKMSSSKGNVITPSDWLEV-APPEVLRYLYA-RRKNPEKHIGF 314
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase.
Length = 963
Score = 32.1 bits (73), Expect = 0.93
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 15 FVTTALPYANGE-LHIGHIMEYIQADIWVRFQCMQQDN 51
+V PY +G LH+GH Y DI R++ MQ N
Sbjct: 113 YVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYN 150
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 975
Score = 32.0 bits (74), Expect = 1.0
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 14/74 (18%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICAD----DAHGAAIMIAAEK 76
P ANG H GH++ D+ R++ M+ G +V D HG + + EK
Sbjct: 50 PTANGLPHYGHLLTRTIKDVVPRYKTMK---GY--KVE----RRAGWDTHGLPVELEVEK 100
Query: 77 A-GMTPKEFINNIS 89
G++ K+ I
Sbjct: 101 ELGISGKKDIEEYG 114
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I
amino acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in
ATP binding.
Length = 143
Score = 30.5 bits (69), Expect = 1.3
Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
Query: 16 VTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAE 75
T + NG LHIGH+ + D + G + DD G I A
Sbjct: 1 TTFSGITPNGYLHIGHLRTIVTFD---FLAQAYRKLGYKVRCIA-LIDD-AGGLIGDPAN 55
Query: 76 KAGMTPKEF 84
K G K F
Sbjct: 56 KKGENAKAF 64
>gnl|CDD|218871 pfam06046, Sec6, Exocyst complex component Sec6. Sec6 is a
component of the multiprotein exocyst complex. Sec6
interacts with Sec8, Sec10 and Exo70.These exocyst
proteins localise to regions of active exocytosis-at the
growing ends of interphase cells and in the medial
region of cells undergoing cytokinesis-in an
F-actin-dependent and exocytosis- independent manner.
Length = 557
Score = 30.8 bits (70), Expect = 2.1
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 17/97 (17%)
Query: 487 WKLAKN--NIYHEKLHKISSRL----LEAFRILTI--YLKPILPNLAKSVETFLNISPLQ 538
+ + K NIYH LH L LEA IL I + + + + S L+
Sbjct: 133 YNIFKTYVNIYHNALHDFLQELADPELEAEDILAILSWDN-TYYSFMGKLGLAPDKSDLE 191
Query: 539 WINIFTPLTQNHK---INKYRHLMTRVDKNIVDNLLK 572
L K + Y L+ + +DNLL+
Sbjct: 192 -----PLLLDELKEELEDDYLSLIVNKVREWMDNLLE 223
>gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase. This model finds the
cysteinyl-tRNA synthetase from most but not from all
species. The enzyme from one archaeal species,
Archaeoglobus fulgidus, is found but the equivalent
enzymes from some other Archaea, including Methanococcus
jannaschii, are not found, although biochemical evidence
suggests that tRNA(Cys) in these species are charged
directly with Cys rather than through a misacylation and
correction pathway as for tRNA(Gln) [Protein synthesis,
tRNA aminoacylation].
Length = 464
Score = 30.8 bits (70), Expect = 2.1
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 342 NIFVH-GFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASK 386
++H GF+ I+ +KMSKS + LK +PE LRY++ S
Sbjct: 251 KYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKN-YDPEILRYFLLSV 295
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 30.5 bits (70), Expect = 3.4
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 20/62 (32%)
Query: 317 GKDIFYFHILFWPA--I---LKFSGRKLP-NNIFVHGFMTI---NGKKMSKS--NKIGIS 365
G DI I FW A I L F+G ++P ++++HG + G+KMSKS N I
Sbjct: 480 GFDI----IFFWVARMIMMGLHFTG-QVPFKDVYIHG--LVRDEQGRKMSKSKGN--VID 530
Query: 366 PL 367
PL
Sbjct: 531 PL 532
Score = 29.3 bits (67), Expect = 7.5
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 25 GELHIGHIME-YIQADIWVRFQCMQQDN 51
G LH+GH + +Q DI +R++ MQ N
Sbjct: 49 GSLHMGHALNNTLQ-DILIRYKRMQGYN 75
>gnl|CDD|236646 PRK10064, PRK10064, catecholate siderophore receptor CirA;
Provisional.
Length = 663
Score = 29.9 bits (67), Expect = 4.0
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 103 FD-NWYSTDSIENIDLVQKIYDTLYNKAKL-----IINKKINQ 139
FD NW D+IE I++V+ +LY L II KKI Q
Sbjct: 120 FDLNWIPVDAIERIEVVRGPMSSLYGSDALGGVVNIITKKIGQ 162
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase.
Length = 1159
Score = 30.1 bits (68), Expect = 4.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCM 47
P+A G H GHI+ DI R+Q M
Sbjct: 47 PFATGLPHYGHILAGTIKDIVTRYQSM 73
>gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase.
Length = 1084
Score = 29.7 bits (67), Expect = 5.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 13 RIFVTTALPYANGELHIGH 31
+ F PY NG LH+GH
Sbjct: 46 KFFGNFPYPYMNGLLHLGH 64
>gnl|CDD|181310 PRK08233, PRK08233, hypothetical protein; Provisional.
Length = 182
Score = 28.6 bits (64), Expect = 6.4
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 234 IKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYF--YVWLDAPIGYLAS 281
I +W++K +++W ++ I + K Y+ +D P YL S
Sbjct: 47 ICKWIDKGANYSEWVLTP----LIKDIQELIAKSNVDYIIVDYPFAYLNS 92
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 29.0 bits (65), Expect = 8.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 104 DNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKN 146
DNW + + +I + ++ L A L I K NQ + I N
Sbjct: 153 DNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFNQLLEMIAN 195
>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 314
Score = 28.7 bits (65), Expect = 9.1
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 25 GELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADD 64
G+LH+G+ + I+ WV +Q++ + +F AD
Sbjct: 16 GKLHLGNYLGAIR--NWVL---LQEEYY---ECFFFIADL 47
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.140 0.432
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,219,720
Number of extensions: 3031142
Number of successful extensions: 3289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3189
Number of HSP's successfully gapped: 122
Length of query: 576
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 474
Effective length of database: 6,413,494
Effective search space: 3039996156
Effective search space used: 3039996156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.8 bits)