RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2393
(576 letters)
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 668 bits (1726), Expect = 0.0
Identities = 241/572 (42%), Positives = 341/572 (59%), Gaps = 23/572 (4%)
Query: 2 KKHDSEFKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFIC 61
H S + ++I VT A PYANG +H+GH++E+IQAD+WVR+Q M+ V FIC
Sbjct: 8 HHHGSMTQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHE-----VNFIC 62
Query: 62 ADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKI 121
ADDAHG IM+ A++ G+TP++ I +S + GF I +DN++ST S EN L + I
Sbjct: 63 ADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELI 122
Query: 122 YDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPT 181
Y L I N+ I+Q +DP K +FLPDR++KG CP C + DQYGD CE C + Y+PT
Sbjct: 123 YSRLKEN-GFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPT 181
Query: 182 KLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKD 241
+LI P S++SG P+++ S+HFFF L + L+ W LQ ++ NK++EW E
Sbjct: 182 ELIEPKSVVSGATPVMRDSEHFFFDLP--SFSEMLQAW-TRSGALQEQVANKMQEWFESG 238
Query: 242 NKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNF 301
+ WDISRDAPYFG +IPN KYFYVWLDAPIG + S KN +K G +F
Sbjct: 239 LQ--QWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSV------SF 290
Query: 302 DEF-ISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSN 360
DE+ E YHFIGKDI YF LFWPA+L+ S + P+N+FVHG++T+NG KMSKS
Sbjct: 291 DEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSR 350
Query: 361 KIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRS 420
I +L + + LRYY +KL+++I+DID N + F+ VN+D++ K +N+ASR+
Sbjct: 351 GTFIKASTWLN-HFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRN 409
Query: 421 SSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIF 480
+ FI K F G L + + + I + +E+R F K + ++ + N +
Sbjct: 410 AGFINKRFDGVLASE--LADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRY 467
Query: 481 FDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWI 540
D+ PW +AK L I S + FR+L YLKP+LP L + E FLN L W
Sbjct: 468 VDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNT-ELTWD 526
Query: 541 NIFTPLTQNHKINKYRHLMTRVDKNIVDNLLK 572
I PL HK+N ++ L R+D V+ L++
Sbjct: 527 GIQQPLL-GHKVNPFKALYNRIDMRQVEALVE 557
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 602 bits (1553), Expect = 0.0
Identities = 167/579 (28%), Positives = 272/579 (46%), Gaps = 40/579 (6%)
Query: 12 RRIFVTTALPYANGELHIGHIM-EYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI 70
R VT+ALPYANG +H GH+ Y+ ADI+VR+ ++ ++ V FIC D HG I
Sbjct: 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGED-----VVFICGTDEHGTPI 56
Query: 71 MIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAK 130
A K G +P+E ++ K I FD + T+ + L Q+ + Y
Sbjct: 57 SFRALKEGRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYEN-G 115
Query: 131 LIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSIL 190
++ K Q + +FLPDR++ G CP C A+DQ GD CE C TP LINP +
Sbjct: 116 HLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRCAI 175
Query: 191 SGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDIS 250
G + S H++ K+ + L++W I + +P + N + W+ + + I+
Sbjct: 176 CGRPISFRDSAHYYIKMQ--DFAERLKRW-IEKQPWKPNVKNMVLSWI--EEGLEERAIT 230
Query: 251 RDAPYFGIKIPNTLE----KYFYVWLDAPIGYLASLKNFFEKGGPKKKYNEL-RNFDEFI 305
RD + GI +P E K YVW +APIGY++ F++ G ++ + N D
Sbjct: 231 RDLNW-GIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNID--- 286
Query: 306 SSPNTEQYHFIGKDIFYFHILFWPAILKFSGR----------KLPNNIFVHGFMTINGKK 355
T HFIGKD FH +FWPA L G+ LP +I + ++T+ GKK
Sbjct: 287 --GQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKK 344
Query: 356 MSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYIN 415
S S I +L + ++LRYY+ + + + D DF+ F +N +L+ N
Sbjct: 345 FSTSRNWAIWVHEFLDV-FPADYLRYYLTTIM-PETRDSDFSFSDFKVRINEELVNNLGN 402
Query: 416 IASRSSSFIEKYFKGYL--NMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQ 473
R+ +F+ +YF G + + + + L ++ + + N F L V+
Sbjct: 403 FVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSL 462
Query: 474 TNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLN 533
+F N +FD +PWK AK + + + L+ + L I L+P LP+ ++ + LN
Sbjct: 463 ASFGNRYFDHKQPWKTAKED--KVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLN 520
Query: 534 ISPLQWINIFTPLTQNHKINKYRHLMTRVDKNIVDNLLK 572
+ ++ F L HK+ K L +V + + +
Sbjct: 521 LDEVKRWE-FRELPAGHKVRKPEILFKKVTDDQIIYFIL 558
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 270 bits (693), Expect = 2e-84
Identities = 131/564 (23%), Positives = 245/564 (43%), Gaps = 84/564 (14%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
++ +VTT + Y N H+GH I AD R+ ++ + V+F+ D HG I
Sbjct: 5 KKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYD-----VFFLTGTDEHGLKIQ 59
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
AE+ G++PKE ++ + KK + I++ + T ++ VQK+++ Y +
Sbjct: 60 KKAEELGISPKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRG-- 117
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQY-GDFCECCSSIYTPTKLI-NPYSI 189
D Y +Y G +C C + +L +
Sbjct: 118 -------------------DIY----------LGEYEGWYCVGCEEFKSEAELAEDHTCP 148
Query: 190 LSGTKPIIKSSKHFFFKLSD--KRCIDFLRKWAIHDKRLQP-----EIVNKIKEWLEKDN 242
+ K +FF+LS + ++ K + + +QP EI++ +K+ L+
Sbjct: 149 IHQKKCEYIKEPSYFFRLSKYQDKLLELYEK---NPEFIQPDYRRNEIISFVKQGLK--- 202
Query: 243 KFNDWDISRDAPYF--GIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRN 300
D ++R GI +P E YVW DA Y+++L++ E P
Sbjct: 203 ---DLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISALEDKVEIYWP--------- 250
Query: 301 FDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSN 360
H +GKDI FH ++WPA L G +LP +F HG+ T+ GKKMSK+
Sbjct: 251 ----------ADLHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTVEGKKMSKTL 300
Query: 361 KIGISPLYYLKI-GMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASR 419
+ P ++ G++ +RY++ ++ +D DF+ ++ ++ +N +L + N+ SR
Sbjct: 301 GNVVDPYEVVQEYGLDE--VRYFLLREVPFG-QDGDFSKKAILNRINGELANEIGNLYSR 357
Query: 420 SSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINI 479
+ K+ G ++ ++ + + + + Y E NF K + +++ T+++N
Sbjct: 358 VVNMAHKFLGGEVS---GARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFTSYLNK 414
Query: 480 FFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQW 539
+ D+ +PW L K E+L K+ L++ +LT L PI PN K L
Sbjct: 415 YVDEKQPWALNKER-KKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGEKE-FL 472
Query: 540 INIFTPLTQNHKINKYRHLMTRVD 563
+ +K+ + + L + +
Sbjct: 473 KELKPYSKNTYKLGERKILFPKRE 496
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 270 bits (693), Expect = 5e-84
Identities = 127/585 (21%), Positives = 228/585 (38%), Gaps = 81/585 (13%)
Query: 1 MKKHDSEFKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFI 60
M H ++TTA+ Y NG HIGH EYI D RF+ + + V ++
Sbjct: 1 MAHHHHHHGGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYD-----VRYL 55
Query: 61 CADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQK 120
D HG + A K G+ E S ++ + I FD + T ++ + +
Sbjct: 56 TGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKA 115
Query: 121 IYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQY-GDFCECCSSIYT 179
I+ + + D Y D Y G + +T
Sbjct: 116 IWKRMADAG---------------------DIY----------LDAYKGWYSIRDERFFT 144
Query: 180 PTKLI-----NPYSILSGTKPIIKSSKHFFFKLSD--KRCIDFLRKWAIHDKRLQP---- 228
+ + +G + +FF+LS R + + H + + P
Sbjct: 145 ENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEE---HPEFIGPDARR 201
Query: 229 -EIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFE 287
EIV+ + L+ D ISR +G+ +P+ + YVW+DA YL +
Sbjct: 202 NEIVSFVSGGLK------DLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGV----- 250
Query: 288 KGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHG 347
G P + R + P H IGKDI FH ++WPA L +G LP IF HG
Sbjct: 251 -GFPDTESESFRRY-----WPAD--LHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHG 302
Query: 348 FMTINGKKMSKSNKIGISPLYYLKI-GMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVN 406
++ G+KMSKS + P+ + G++ +RY++ ++ +D +N + I VN
Sbjct: 303 WLLNRGEKMSKSIGNVVDPVNLVDTFGLDQ--VRYFLLREVPFG-QDGSYNEDAIIGRVN 359
Query: 407 SDLIGKYINIASRSSSFIEKYFKGYL--NMKWVKDNDTFLSKLRVVSSSIQKYYENRNFN 464
+DL + N+A RS S + K + ++ ++ L+ + ++++++ +
Sbjct: 360 ADLANELGNLAQRSLSMVAKNLGAAVPDPGEFTDEDTALLAAADALLERVREHFDVPAMH 419
Query: 465 KVLYIVIEQTNFINIFFDQNKPWKLAKNNIY--HEKLHKISSRLLEAFRILTIYLKPILP 522
L + N +F +PW L K++ ++ + LE RI ++ L+P++P
Sbjct: 420 LALEAIWSVLGAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMP 479
Query: 523 NLAKSVETFLNISP--LQWINIFTPLTQNHKINKYRHLMTRVDKN 565
+ L + I + + + R +
Sbjct: 480 ESTAKLLDLLGQPTDERDFSAIANRIKPGTSLPAPSGIFPRYQND 524
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 264 bits (677), Expect = 1e-81
Identities = 129/568 (22%), Positives = 231/568 (40%), Gaps = 82/568 (14%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
++TTA+ Y NG+ HIGH E I D RFQ + + VYF+ D HG ++ +A
Sbjct: 28 YITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMD-----VYFLTGTDEHGIKMLQSA 82
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134
K G+TP++ + +S ++ + D++ T + Q I+ +
Sbjct: 83 RKEGITPRDLADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAIWQAMVANG----- 137
Query: 135 KKINQFFDPIKNIFLPDRYIKGECPICNAKDQY-GDFCECCSSIYTPTKLI----NPYSI 189
D Y K Y G + + Y +
Sbjct: 138 ----------------DIY----------KGGYAGWYSVRDEAYYGEEETEVRADGVRYG 171
Query: 190 LSGTKPIIKSSKHFFFKLSD--KRCIDFLRKWAIHDKRLQP-----EIVNKIKEWLEKDN 242
GT + +FF+LS + +D + + P EIV+ +K L+
Sbjct: 172 PQGTPVEWVEEESYFFRLSAYQDKLLDLYEN---NPGFIMPAERRNEIVSFVKSGLK--- 225
Query: 243 KFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFD 302
D ISR +GI +P + YVW+DA Y+ +L + + + Y
Sbjct: 226 ---DLSISRTTFDWGIPVPGDEKHVMYVWVDALTNYITAL-GYPDTTDERWAY------- 274
Query: 303 EFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKI 362
P H IGKDI FH ++WPA L + LP +F HGF+ G+KMSKS
Sbjct: 275 ----WPAN--AHIIGKDISRFHAVYWPAFLMSAQLPLPKRVFAHGFLFNRGEKMSKSVGN 328
Query: 363 GISPLYYLKI-GMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSS 421
I P ++ G++ LRY++ ++ +D ++ ++ ++ N+DL N+A RS
Sbjct: 329 VIDPFELVERYGLDQ--LRYFLMREVPFG-QDGSYSHEAIVNRTNADLANDLGNLAQRSL 385
Query: 422 SFIEKYFKGYL--NMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINI 479
S I K +G + + + + L + + +K +++ + L + N
Sbjct: 386 SMIAKNCEGKVPQPGAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVVAEANR 445
Query: 480 FFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP--L 537
+F +PW L K + ++ + E R + I ++P +P A+ + L +
Sbjct: 446 YFAGQEPWALRKTD--PARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAVPADKR 503
Query: 538 QWINI-FTPLTQNHKINKYRHLMTRVDK 564
Q+ ++ +PL + + + R +
Sbjct: 504 QFADVLASPLAGGTDLPAPQPVFPRYVE 531
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A
2d54_A
Length = 500
Score = 261 bits (670), Expect = 5e-81
Identities = 118/534 (22%), Positives = 221/534 (41%), Gaps = 80/534 (14%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
+VTT + Y N E H+GH + AD R+ + +F+ D HG + AA
Sbjct: 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYR-----TFFLTGTDEHGETVYRAA 60
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134
+ AG PK F++ +S K+ D I +D++ T + +VQ + +Y
Sbjct: 61 QAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAG----- 115
Query: 135 KKINQFFDPIKNIFLPDRYIKGECPICNAKDQY-GDFCECCSSIYTPTKLINPYSILSGT 193
D Y +Y G +C C YT +L+ + G
Sbjct: 116 ----------------DIY----------YGEYEGLYCVSCERFYTEKELVEGLCPIHGR 149
Query: 194 KPIIKSSKHFFFKLSD--KRCIDFLRKWAIHDKRLQP-----EIVNKIKEWLEKDNKFND 246
+ ++FF++ +++++ + ++P E++ + E + D
Sbjct: 150 PVERRKEGNYFFRMEKYRPWLQEYIQE---NPDLIRPEGYRNEVLAMLAEPIG------D 200
Query: 247 WDISRDAPYF--GIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEF 304
ISR GI +P +VW DA + Y+++L Y E + F
Sbjct: 201 LSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALD-----------YPEGEAYRTF 249
Query: 305 ISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMT-INGKKMSKSNKIG 363
P+ +H IGKDI H +FWP +LK +G + ++ V GF+ +G+KMSK+
Sbjct: 250 W--PHA--WHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNV 305
Query: 364 ISPLYYL-KIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSS 422
+ P L K G + LRYY+ ++ +D + ++ + +DL N+ R+ +
Sbjct: 306 VDPFALLEKYGRDA--LRYYLLREIPYG-QDTPVSEEALRTRYEADLADDLGNLVQRTRA 362
Query: 423 FIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFD 482
+ ++ +G + L++ ++ ++ F+ L + +N + +
Sbjct: 363 MLFRFAEGRIP---EPVAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYIN 419
Query: 483 QNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP 536
+ KPW+L K E+ + R++E RI +I L P +P+ + L +
Sbjct: 420 EKKPWELFKKE--PEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKE 471
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 253 bits (647), Expect = 3e-77
Identities = 117/531 (22%), Positives = 222/531 (41%), Gaps = 50/531 (9%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
FVT+ + Y N HIGH+ + D+ R+ ++ + V+ + D HG + AA
Sbjct: 12 FVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGER-----VFALTGTDEHGQKVAEAA 66
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134
++ ++P +F ++ KK + D + T + ++ +V++++ L K + +
Sbjct: 67 KQKQVSPYDFTTAVAGEFKKXFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLG 126
Query: 135 KKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTK 194
+ + ++ P G N S+ SG
Sbjct: 127 RYEGWYSISDESFLTPQNITDGVDKDGNPC---------------------KVSLESGHV 165
Query: 195 PIIKSSKHFFFKLSD--KRCIDFLRKWAIHDKRLQPEI-VNKIKEWLEKDNKFNDWDISR 251
S +++ F+LS +R +++ + + PE ++ +EK D +SR
Sbjct: 166 VTWVSEENYMFRLSAFRERLLEWYHA---NPGCIVPEFRRREVIRAVEKG--LPDLSVSR 220
Query: 252 DAPY---FGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSP 308
+ I +P + YVWLDA YL + ++ G + + N E +
Sbjct: 221 ARATLHNWAIPVPGNPDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPA- 279
Query: 309 NTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLY 368
H IGKDI FH ++WPA L +G LP I HG+ T + KK+SKS P+
Sbjct: 280 ---DVHVIGKDILKFHAIYWPAFLLSAGLPLPKKIVAHGWWTKDRKKISKSLGNVFDPVE 336
Query: 369 YL-KIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKY 427
+ G + L+Y++ + +D D++ ++ I+ +N +L N+ R +S
Sbjct: 337 KAEEFGYDA--LKYFLLRESGFS-DDGDYSDKNMIARLNGELADTLGNLVMRCTSAK-IN 392
Query: 428 FKGYL--NMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNK 485
G + +++++ + ++ + + YY + K + V + IN +
Sbjct: 393 VNGEWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINAYVTDMA 452
Query: 486 PWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP 536
PWKL K + E+L + LE R+ T+ L PILP + + L +
Sbjct: 453 PWKLVKTD--PERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVPE 501
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
tRNA ligase metrs, methionine, translation, ATP-binding;
HET: ME8; 2.00A {Leishmania major}
Length = 564
Score = 249 bits (639), Expect = 8e-76
Identities = 119/545 (21%), Positives = 216/545 (39%), Gaps = 79/545 (14%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
F TT + Y N HIGH+ + D+ R+ ++ + V+ + D HG + AA
Sbjct: 29 FATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEE-----VFVMTGTDEHGQKVAEAA 83
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134
K G++P +F ++SS K+ + + T + + LVQ I+ L K
Sbjct: 84 AKQGVSPMDFTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLAAKG----- 138
Query: 135 KKINQFFDPIKNIFLPDRYIKGECPICNAKDQY-GDFCECCSSIYTPTKLINPYSILSGT 193
D Y +Y G + S T + +
Sbjct: 139 ----------------DIY----------LGKYEGWYSVSDESFLTAQNVADGVDRDGKP 172
Query: 194 KPIIKSSKH---------FFFKLSD--KRCIDFLRKWAIHDKRLQP-----EIVNKIKEW 237
+ S H + F+LS +R + + H + P E++ +++
Sbjct: 173 CKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHD---HPNCIVPEFRRREVIKTVEKG 229
Query: 238 LEKDNKFNDWDISRDAPYF---GIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKK 294
L D ISR I +P YVWLDA Y +
Sbjct: 230 LF------DLSISRKRESVMNWSIPVPGDERHCIYVWLDALFNYYTGA-LTRVATDGTET 282
Query: 295 YNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGK 354
+E + P H +GKDI FH ++WPA L + LP + HG+ T + K
Sbjct: 283 LDEDHHALNRW--PAD--VHVVGKDILKFHAIYWPAFLMSAELPLPERLVSHGWWTKDHK 338
Query: 355 KMSKSNKIGISPLYYL-KIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKY 413
K+SKS P+ + G++ L+Y++ + N + +D D++ ++ ++ +N +L
Sbjct: 339 KISKSLGNAFDPVEKAKEFGIDA--LKYFLMRESNFQ-DDGDYSDKNMVARLNGELADTL 395
Query: 414 INIASRSSSFIEKYFKGYL--NMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVI 471
N+ SR + G ++ + + T ++ L ++ ++ YY + L +
Sbjct: 396 GNLVSRCVAPK-INVNGMWPEPAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIF 454
Query: 472 EQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETF 531
+ +N + +N PWKL K + +L + +E RI T++L+P++P AK +
Sbjct: 455 DVLRSLNAYVTENAPWKLVKMD--TARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDA 512
Query: 532 LNISP 536
L +
Sbjct: 513 LGVPE 517
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 63.4 bits (154), Expect = 1e-10
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
++T A PY +G LH+GH Y D+ RF+ MQ G V F A G+ I+ A
Sbjct: 37 YITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQ---GY--NVLFPMAWHITGSPIVGIA 91
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTD 110
E+ + I K + + D
Sbjct: 92 ERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVK 127
Score = 60.0 bits (145), Expect = 1e-09
Identities = 58/374 (15%), Positives = 118/374 (31%), Gaps = 62/374 (16%)
Query: 191 SGTKPIIK-SSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDI 249
G + +IK +F + + RK K L + + ++ +
Sbjct: 452 FGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDW---LDKKAC 508
Query: 250 SRDAPYFGIKIPNTLEKY--------FYVWLDAPIGYLASL------------KNFFEKG 289
+R G +P E Y+ ++ L FF+
Sbjct: 509 AR-KIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYI 567
Query: 290 GPKKKYNELRNFDEFISSPNTEQYHFI---------------GKDIFYFHILFW--PAIL 332
++ + E + E H + GKD+ H+ F+ +
Sbjct: 568 FLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVA 627
Query: 333 KFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIE 392
F P I V+GF T+ G+KMSKS ++ + ++ + +R YI S L
Sbjct: 628 IFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIE-ENGADVVRLYIMS-LAEHDS 685
Query: 393 DIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSS 452
D D+ + I ++ + S+ F E KG + +K + + L +L
Sbjct: 686 DFDWRRKEVGKLRKQ--IERFYELISQ---FAEYEVKGNVELKDI--DRWMLHRLNKAIK 738
Query: 453 SIQKYYENRNFNKVL-YIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFR 511
E + + N + + + + +++ + L
Sbjct: 739 ETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEG----RDDEAKRYV------LRTLAD 788
Query: 512 ILTIYLKPILPNLA 525
+ + P P++
Sbjct: 789 VWVRLMAPFTPHIC 802
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 61.5 bits (149), Expect = 5e-10
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
++T A PY +G LH+GH Y D+ RF+ MQ G V F A G+ I+ A
Sbjct: 37 YITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQ---GY--NVLFPMAWHITGSPIVGIA 91
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTD 110
E+ + I K + + D
Sbjct: 92 ERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVK 127
Score = 59.2 bits (143), Expect = 2e-09
Identities = 75/502 (14%), Positives = 148/502 (29%), Gaps = 67/502 (13%)
Query: 65 AHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDT 124
AH +A E E + + + + YI ++ V K+
Sbjct: 327 AHAPFDHVALEDLKRET-EILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIK 385
Query: 125 LYN-KAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKL 183
K KL K + K IF Y +G+ P+ K+ +
Sbjct: 386 SQKDKEKLEQATKTIYKAEYHKGIFKVPPY-EGK-PVQEVKEAIAKEMLEKGIAEIMYEF 443
Query: 184 INPYSIL-SGTKPIIKSSKH-FFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKD 241
I G + +IK +F + + RK K L + + ++
Sbjct: 444 AEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWL 503
Query: 242 NKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLAS-------------------- 281
+ +R G +P E D+ I
Sbjct: 504 D---KKACAR-KIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKL 559
Query: 282 LKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYF-----------HILFWPA 330
FF+ ++ + E + E H + ++ Y+ I
Sbjct: 560 TPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLT 619
Query: 331 ILKFSGRKL------PNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIA 384
F+ + P I V+GF T+ G+KMSKS ++ + ++ + +R YI
Sbjct: 620 FFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEE-NGADVVRLYIM 678
Query: 385 SKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFL 444
S D D+ + I ++ + S+ F E KG + +K + + L
Sbjct: 679 SL-AEHDSDFDWRRKEVGKLRKQ--IERFYELISQ---FAEYEVKGNVELKDI--DRWML 730
Query: 445 SKLRVVSSSIQKYYENRNFNKVL-YIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKIS 503
+L E + + N + + + + +++ +
Sbjct: 731 HRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEG----RDDEAKRYV---- 782
Query: 504 SRLLEAFRILTIYLKPILPNLA 525
L + + P P++
Sbjct: 783 --LRTLADVWVRLMAPFTPHIC 802
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 1e-09
Identities = 105/605 (17%), Positives = 180/605 (29%), Gaps = 228/605 (37%)
Query: 21 PYANGELH---IGHIMEYIQADIWVRFQCMQQDNGKSRQV----------YFICADDAHG 67
P EL +G++ ++ G+ QV ++ +D H
Sbjct: 54 PTTPAELVGKFLGYVSSLVE----------PSKVGQFDQVLNLCLTEFENCYLEGNDIH- 102
Query: 68 AAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYN 127
+AA+ + + K L IK N+ + + +K L+
Sbjct: 103 ---ALAAKLLQENDTTLV------KTKEL----IK--NYITARIMAKRPFDKKSNSALFR 147
Query: 128 KAKLIINKKINQFFDPIKNIF----LPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKL 183
+ Q IF D Y F E +Y
Sbjct: 148 AV----GEGNAQLV----AIFGGQGNTDDY----------------FEEL-RDLY----- 177
Query: 184 INPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNK 243
Y ++ K S + + +R + +++ + +N I EWLE +
Sbjct: 178 -QTY------HVLVGD----LIKFSAETLSELIRT-TLDAEKVFTQGLN-ILEWLENPSN 224
Query: 244 FNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFF---EKGG--PKKKYNEL 298
D D P I P IG + L ++ + G P EL
Sbjct: 225 TPDKDYLLSIP---ISCP-------------LIG-VIQLAHYVVTAKLLGFTPG----EL 263
Query: 299 RNFDE-------------FISSPNTEQYHFIGKDIFYFHILFWPAI-----LKFSGRKLP 340
R++ + I+ ++ + F +LF+ I + LP
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWE-SFFVSVRKAITVLFF--IGVRCYEAYPNTSLP 320
Query: 341 NNIFVHGFMTINGKKMSKSNKIGI-SPLYYLKI-GMNPEWLRYYIASKLNNKIEDIDFNS 398
+I + S N G+ SP+ L I + E ++ Y+ K N+ +
Sbjct: 321 PSIL----------EDSLENNEGVPSPM--LSISNLTQEQVQDYVN-KTNSHLPA---GK 364
Query: 399 QSFISCVNSDLIGKYINIASRSSSFIEKYFKGY-LNMKWVKDNDTFLSKLRVVSSSIQKY 457
Q IS VN K + ++ S Y LN L K + S Q
Sbjct: 365 QVEISLVNGA---KNLVVSGPPQSL-------YGLN--------LTLRKAKAPSGLDQ-- 404
Query: 458 YENRNFNKVLYIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTI-- 515
+R I F + K K S+R F L +
Sbjct: 405 --SR-----------------IPFSERKL--------------KFSNR----F--LPVAS 425
Query: 516 -----YLKP----ILPNLAKSVETFLNISPLQWINIFTPLTQNHKINKYRHLMTRVDKNI 566
L P I +L K+ +F N +Q I ++ + R L + + I
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSF-NAKDIQ-IPVYDTFDGSD----LRVLSGSISERI 479
Query: 567 VDNLL 571
VD ++
Sbjct: 480 VDCII 484
Score = 40.0 bits (93), Expect = 0.003
Identities = 51/346 (14%), Positives = 101/346 (29%), Gaps = 118/346 (34%)
Query: 256 FGIKIPNTLEKYFYVWLDAPIGYLAS-LKNFFEKGGPKKKYNELRNFDEFISSPNTEQY- 313
+ +P +F AS L+ F K P+ DE + E
Sbjct: 18 HVLLVPTAS--FFI----------ASQLQEQFNKILPEP-TEGFAADDEPTTPA--ELVG 62
Query: 314 HFIGKDIF------------YFHIL------FWPAILKFSGRKLPNNI--FVHGFMTING 353
F+G + + +L F L+ G N+I + N
Sbjct: 63 KFLG---YVSSLVEPSKVGQFDQVLNLCLTEFENCYLE--G----NDIHALAAKLLQEND 113
Query: 354 KKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDID------FNSQSFISCVNS 407
+ K+ ++ I +I + + S L + + + F Q N+
Sbjct: 114 TTLVKTKEL-IKNYITARIMAKRPFDKKS-NSALFRAVGEGNAQLVAIFGGQG-----NT 166
Query: 408 D---------------LIGKYINIA-------SRSSSFIEKYF-KGYLNMKWVKDNDTFL 444
D L+G I + R++ EK F +G ++W+++
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 445 SKLRVVSSSIQKYYENRNFNKVLYIVIEQ-TNFINIFFDQNKPWKLAKNNIYHEKLHKIS 503
K ++S I + I + Q +++ + + L
Sbjct: 227 DKDYLLSIPI-------SCP---LIGVIQLAHYV----------------VTAKLLGFTP 260
Query: 504 SRLLEAFRILTIYLKPIL----PNLAKSVETFLNISP-----LQWI 540
L + T + + ++ S E+F L +I
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI 306
Score = 37.3 bits (86), Expect = 0.017
Identities = 59/389 (15%), Positives = 102/389 (26%), Gaps = 159/389 (40%)
Query: 68 AAIMIAAEKAGMTPKEFINNISS-------------------------NRKKYLDG-FYI 101
A ++ A+ G TP E + + + +K + F+I
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI 306
Query: 102 ------KFDNWYST-----DSIEN-----------IDLVQKIYDTLYNKAKLIINKKINQ 139
+ N DS+EN +L Q+ + + K N
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE---QV---QDYV--NKTNS 358
Query: 140 FFDPIKNIFL-----PDRYIKGECPIC-NAKDQYGDFCECCSSIYTPTKL----INPYSI 189
K + + + + + YG P+ L I P+
Sbjct: 359 HLPAGKQVEISLVNGAKNLV-----VSGPPQSLYG-LNLTLRKAKAPSGLDQSRI-PF-- 409
Query: 190 LSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAI----HDKRLQPEIVNKIKEWLEKDNKFN 245
S K + FL + H L P + I + L K+N
Sbjct: 410 -SERKLKFSNR--------------FLP---VASPFHSHLLVP-ASDLINKDLVKNNV-- 448
Query: 246 DWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFI 305
++ I+IP V+ G ++LR I
Sbjct: 449 SFNAKD------IQIP--------VY-------------DTFDG------SDLRVLSGSI 475
Query: 306 SSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTING-KKMSKSNKIGI 364
S I I + W +F +I G +G ++ NK G
Sbjct: 476 S-------ERIVDCIIRLPV-KWETTTQFK----ATHILDFGPGGASGLGVLTHRNKDG- 522
Query: 365 SPLYYLKIGMNPEWLRYYIASKLNNKIED 393
+R +A L+ +D
Sbjct: 523 ------------TGVRVIVAGTLDINPDD 539
Score = 35.8 bits (82), Expect = 0.042
Identities = 46/279 (16%), Positives = 95/279 (34%), Gaps = 83/279 (29%)
Query: 229 EIVNKIKEWLEKDNKFNDWDISRDAP-----YFGIKIPNTL-EKYFYVWLDAPI-GYLAS 281
++ N+ + F+ DI + P +FG + + E Y + + + G L +
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKT 1703
Query: 282 LKNFFEKGGPKKKYNELRNFDEFISSP-NTEQYHFIGKDIFYFHILFWPAI--------- 331
K F E Y R+ +S+ T Q PA+
Sbjct: 1704 EKIFKEINEHSTSYT-FRSEKGLLSATQFT-Q----------------PALTLMEKAAFE 1745
Query: 332 -LKFSGRKLPNNIFV-H------------GFMTIN---------GKKMSKS---NKIGIS 365
LK G + F H M+I G M + +++G S
Sbjct: 1746 DLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRS 1805
Query: 366 PLYYLKIGMNPEWLRYYIASKLNNK-----IEDIDFNSQSFISCVNSDLIGK-YINIA-- 417
Y I +NP +A+ + + +E + + + VN ++ + Y+ A
Sbjct: 1806 N--YGMIAINPG----RVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV-AAGD 1858
Query: 418 SRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQK 456
R+ + ++ ++ + + +L+ S S+++
Sbjct: 1859 LRALDTVTNVLN-FIKLQKID-----IIELQ-KSLSLEE 1890
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 4e-07
Identities = 86/599 (14%), Positives = 156/599 (26%), Gaps = 199/599 (33%)
Query: 95 YLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYN------KAKLII-------NKKINQFF 141
+ D F FD D ++I L ++ D + + + + +F
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 142 DPIKNI---FLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIK 198
+ + I FL IK E + E +Y ++ Y++ S +P +K
Sbjct: 84 EEVLRINYKFLMSP-IKTEQR--QPSMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLK 139
Query: 199 SSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKI---------KEWLEKDNKFNDWDI 249
LR+ L+P + K W+ D + +
Sbjct: 140 -----------------LRQAL---LELRPA--KNVLIDGVLGSGKTWVALD-VCLSYKV 176
Query: 250 SRDAPYFGIKIPNTLEKYFYVWL-----DAPIGYLASLKNFFEKGGPKKKYNELRNFDEF 304
F I F WL ++P L L+ + P + +
Sbjct: 177 QCKMD-FKI---------F--WLNLKNCNSPETVLEMLQKLLYQIDP--NWTSRSDHSSN 222
Query: 305 ISSPNTEQYHFIGKDIF----YFHILF-----W-PAILK-FSGR--------------KL 339
I + + + Y + L F+ L
Sbjct: 223 IKLRIHSIQAEL-RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 340 PNNIFVHGFMTINGKKMSKSNKIG-------------------ISPLYYLKIG-----MN 375
H + + ++ +P I
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 376 PEW--LRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKY----------INIAS----- 418
W ++ KL IE S ++ + K +I +
Sbjct: 342 ATWDNWKHVNCDKLTTIIE-------SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 419 -----------------RSSSFIEKYFKG--------YLNMKWVKDNDTFLSKLRVVSSS 453
S +EK K YL +K +N+ L + V +
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 454 IQKYYENRNFNKVL-------YIV-----IEQTN----FINIFFDQNKPWKLAKNNIYHE 497
I K +++ + +I IE F +F D + K I H+
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR--FLEQK--IRHD 510
Query: 498 KL-HKISSRLLEAFRILTIYLKPILPN------LAKSVETFL-NISPLQWINIFTPLTQ 548
S +L + L Y I N L ++ FL I + +T L +
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
Score = 49.1 bits (116), Expect = 4e-06
Identities = 83/534 (15%), Positives = 147/534 (27%), Gaps = 194/534 (36%)
Query: 66 HGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTL 125
G ++ + K + + + K F++ N S +++ ++++QK+
Sbjct: 156 DG---VLGSGKTWVA-LDVCLSYKVQCKMDFKIFWLNLKNCNSPETV--LEMLQKLL--- 206
Query: 126 YNKAKLIINKKINQFFDPIKNIFLPDRYIKGE------------C-----PICNAKD-QY 167
I+ D NI L I+ E C + NAK
Sbjct: 207 -----YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 168 GDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWA-IHDKRL 226
+ C + T T+ LS S H L+ L K+ + L
Sbjct: 262 FNLS--CKILLT-TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 227 QPE-----------IVNKIKEWLEKDNKFNDW------------DISRDA-------PYF 256
E I I++ L +++W + S + F
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGL---ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 257 --------GIKIP-NTLEKYFYVWLDAPIGYLASLKNFFEK-----GGPKK--------- 293
IP L W D + + N K PK+
Sbjct: 376 DRLSVFPPSAHIPTILLSLI---WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 294 -------------------KYNELRNFD-EFISSPNTEQYHFIGKDIFYFHILFWPAILK 333
YN + FD + + P +QY FY HI
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY-------FYSHI-------- 477
Query: 334 FSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIED 393
G L K + ++ + + +L + +L KI
Sbjct: 478 --GHHL--------------KNIEHPERMTLFRMVFL----DFRFLE--------QKIRH 509
Query: 394 IDFNSQSFISCVN--SDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVS 451
+ S +N L K++K Y + DND +L
Sbjct: 510 DSTAWNASGSILNTLQQL----------------KFYKPY-----ICDNDPKYERL---V 545
Query: 452 SSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSR 505
++I + N + + T+ + I +A++ E+ HK R
Sbjct: 546 NAILDFLPKIEENLICS---KYTDLLRIAL-------MAEDEAIFEEAHKQVQR 589
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 45.6 bits (109), Expect = 4e-05
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAG-- 78
PYANG LH+GH + I D VR++ MQ G ++ D HG I A K G
Sbjct: 57 PYANGNLHMGHALNKILKDFIVRYKTMQ---GF--YAPYVPGWDTHGLPIEQALTKKGVD 111
Query: 79 ---MTPKEF 84
M+ EF
Sbjct: 112 RKKMSTAEF 120
Score = 28.3 bits (64), Expect = 8.0
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 19/89 (21%)
Query: 444 LSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINI-----FFDQNKPWKLAKNNIYHEK 498
L++LR ++S YEN ++ + V NFIN+ + D K+ +Y E+
Sbjct: 682 LNRLREFTASTINNYENFDYLNIYQEVQ---NFINVELSNFYLD------YGKDILYIEQ 732
Query: 499 LHKISSR-----LLEAFRILTIYLKPILP 522
R L + +T L PIL
Sbjct: 733 RDSHIRRSMQTVLYQILVDMTKLLAPILV 761
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 44.8 bits (107), Expect = 7e-05
Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 24/127 (18%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA-GM 79
P ANG H+GH D++ R++ M+ G D HG + + EK G+
Sbjct: 47 PTANGLPHVGHAQARSYKDLFPRYKTMR---GY--YAPRRAGWDTHGLPVELEVEKKLGL 101
Query: 80 TPKEFINNISS---NRK------KYLD---------GFYIKFDNWYSTDSIENIDLVQKI 121
K I N+ Y +++ ++ Y+T I+ +
Sbjct: 102 KSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWS 161
Query: 122 YDTLYNK 128
L+++
Sbjct: 162 LKNLFDR 168
Score = 32.1 bits (74), Expect = 0.55
Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 43/160 (26%)
Query: 342 NIFVHGF-MTINGKKMSKSNKIGISPLYYL-KIGMNPEWLRYYIASKLNNKIEDIDFNSQ 399
N+ HG + G+KMSKS + P + K G + LR+YI + D F
Sbjct: 577 NVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADA--LRWYIYVSAPPE-ADRRF-GP 632
Query: 400 SFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNM------------------KWVKDND 441
+ + D N+ S +F Y N+ +W+
Sbjct: 633 NLVRETVRDYFLTLWNVYS--------FFVTYANLDRPDLKNPPPPEKRPEMDRWL---- 680
Query: 442 TFLSKLRVVSSSIQKYYENRNFNKVL-----YIVIEQTNF 476
L++++ + + + E + ++V + + +
Sbjct: 681 --LARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQW 718
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 41.1 bits (97), Expect = 8e-04
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 342 NIFVH-GFMTINGKKMSKS--NKIGISPLYYLKIGMNPEWLRYYIAS 385
+VH G + +G KMSKS N + +S L G++P +R + S
Sbjct: 277 RHYVHTGMIGWDGHKMSKSRGNLVLVSQL--RAQGVDPSAIRLGLFS 321
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 38.8 bits (91), Expect = 0.004
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 342 NIFVH-GFMTINGKKMSKS--NKIGISPLYYLKIGMNPEWLRYYIAS 385
++FVH F+ ++ KMSKS N I + L +P RY +
Sbjct: 285 DVFVHGEFLIMDYNKMSKSRGNFITVKDL--EDQNFSPLDFRYLCLT 329
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus
thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A*
2byt_A 2v0g_A*
Length = 878
Score = 35.3 bits (82), Expect = 0.057
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 20 LPYANGELHIGHIMEYIQADIWVRFQCMQQDN 51
PY +G+LH+GH+ Y D+ RF+ MQ
Sbjct: 41 FPYPSGDLHMGHLKNYTMGDVLARFRRMQGYE 72
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 33.7 bits (78), Expect = 0.19
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 20 LPYANGELHIGHIMEYIQADIWVRFQCMQQDN 51
LPY +G LH+GH+ Y D+ R+Q M N
Sbjct: 61 LPYPSGRLHMGHVRNYTIGDVIARYQRMLGKN 92
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 32.3 bits (73), Expect = 0.24
Identities = 9/36 (25%), Positives = 11/36 (30%), Gaps = 8/36 (22%)
Query: 150 PDRYIKGECPICNAKD-------QYGD-FCECCSSI 177
P+ I CP C GD C C +
Sbjct: 16 PNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLV 51
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
c.26.1.1 PDB: 1li7_A 1u0b_B
Length = 461
Score = 32.9 bits (76), Expect = 0.28
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 342 NIFVH-GFMTINGKKMSKS--NKIGISPLYYLKIGMNPEWLRYYIAS 385
N ++H G + ++ +KMSKS N + + LK + E +RY++ S
Sbjct: 252 NYWMHSGMVMVDREKMSKSLGNFFTVRDV--LKY-YDAETVRYFLMS 295
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A
{Coxiella burnetii}
Length = 462
Score = 32.5 bits (75), Expect = 0.44
Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 342 NIFVH-GFMTINGKKMSKS 359
+++H G + IN +KMSKS
Sbjct: 255 KLWMHAGLLEINKEKMSKS 273
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions,
DNA HYDR sodium ION, quadruplex DNA, DNA-binding
protein-DNA complex; 1.86A {Sterkiella nova} SCOP:
b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A
1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A
1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Length = 495
Score = 32.3 bits (72), Expect = 0.54
Identities = 20/94 (21%), Positives = 32/94 (34%)
Query: 152 RYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKR 211
R G+ + + + T+ IN +S T P SSKH + ++
Sbjct: 128 RLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHATIEKNEIS 187
Query: 212 CIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFN 245
+ LRKWA I + + L K
Sbjct: 188 ILQNLRKWANQYFSSYSVISSDMYTALNKAQAQK 221
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 31.4 bits (72), Expect = 1.0
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 14/59 (23%)
Query: 317 GKDIFYFHILFWPAILKFSGR----KLP-NNIFVHGFMTI---NGKKMSKSNKIGISPL 367
G DI + W + ++ SG + P + +HG + G+KMSKS I PL
Sbjct: 488 GYDI----LFLWVSRMEVSGYHFMGERPFKTVLLHG--LVLDEKGQKMSKSKGNVIDPL 540
Score = 29.8 bits (68), Expect = 3.2
Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 25 GELHIGHIMEY-IQADIWVRFQCMQ 48
G LH+GH ++ +Q D +R++ M+
Sbjct: 47 GSLHMGHALDNSLQ-DALIRYKRMR 70
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 29.7 bits (67), Expect = 2.8
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 14/72 (19%)
Query: 25 GELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEF 84
G +HIGHI+ + W+ Q+ I DD + K +T +
Sbjct: 84 GPMHIGHIIPFFAT-KWL------QEKFGVNLYIQI-TDD-E--KFLF---KENLTFDDT 129
Query: 85 INNISSNRKKYL 96
N +
Sbjct: 130 KRWAYDNILDII 141
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 29.2 bits (65), Expect = 3.9
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 14/85 (16%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
+ F+ T ++ +H+GH I Q + + + DD
Sbjct: 101 KPFFLYTGRGPSSDSMHLGH---MIPFVFTKWLQ--EVFD---VPLVIELTDDEK----- 147
Query: 72 IAAEKAGMTPKEFINNISSNRKKYL 96
K +T + N N K +
Sbjct: 148 -FLFKHKLTINDVKNFARENAKDII 171
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics
initiative, RSGI, structural genomics, ligase; 2.30A
{Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Length = 592
Score = 28.5 bits (64), Expect = 6.9
Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 2/66 (3%)
Query: 62 ADDAHGAAIMIAAEKAG--MTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQ 119
+ + A +E +N I + + ++D I L+Q
Sbjct: 191 PEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQ 250
Query: 120 KIYDTL 125
K L
Sbjct: 251 KALALL 256
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 7.9
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 19/41 (46%)
Query: 497 EK--LHKISSRLLEAFRILTIYLKPILPN----LA--KSVE 529
EK L K+ + L K + LA ++E
Sbjct: 18 EKQALKKLQASL-----------KLYADDSAPALAIKATME 47
>2i71_A Hypothetical protein; structural genomics, APC6294, PSI-2, protein
structure initia midwest center for structural genomics,
MCSG; 1.70A {Sulfolobus solfataricus} SCOP: e.72.1.1
Length = 400
Score = 28.3 bits (62), Expect = 8.5
Identities = 34/349 (9%), Positives = 104/349 (29%), Gaps = 35/349 (10%)
Query: 235 KEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGP--- 291
K + + + + + ++ ++K + + +
Sbjct: 34 KGYQKVTYEIDGEKFESNVSVLALRDLLKVDKTVVILGISVADVYNCKYADYRSCKECII 93
Query: 292 KKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFV---HG- 347
+ N+L + ++ +PN Q D ++ +I + L+ ++ N +F+ HG
Sbjct: 94 QNSKNDLGISESYVVAPNVYQKFKGKPDHYFTYIYY--HSLRILEKEGINEVFIDTTHGI 151
Query: 348 -FMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVN 406
+M + K+ + Y K + Y + + + + +
Sbjct: 152 NYMGVLAKEAIQL----AVSAYAAKSEKEVKVSLYNSDPVGKDVSDTVKLHE------IE 201
Query: 407 SDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKV 466
+ I + + + K K + N + + + + + Y ++ +
Sbjct: 202 AIKISPLSGLKYVTYQILNKD-KNFFNKIFSDSVNAIPRFATALDNGLFIYLSEKDSSLH 260
Query: 467 LYIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAK 526
L + + + + + ++ + H L L L
Sbjct: 261 LKRLEDDLSKDPLLTPSENEINVVYKDMKYALSHA----LFYVIS--RFSGNVDLDTLRH 314
Query: 527 SVETFLNISPLQWINIFTPLTQNHKINKYRHLMTRVDKNIVDNLLKNKN 575
ET+ + I ++++K ++ ++ +K +
Sbjct: 315 YAETYADKVTRAII--------ENEVDKIEKYQMGSERKLLGEYMKVEG 355
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.432
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,137,111
Number of extensions: 558273
Number of successful extensions: 1490
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1413
Number of HSP's successfully gapped: 76
Length of query: 576
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 477
Effective length of database: 3,937,614
Effective search space: 1878241878
Effective search space used: 1878241878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)