RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2393
(576 letters)
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 212 bits (540), Expect = 3e-64
Identities = 170/401 (42%), Positives = 237/401 (59%), Gaps = 52/401 (12%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
++I VT ALPYANG +H+GH++E+IQAD+WVR+Q M+ V FICADDAHG IM
Sbjct: 2 KKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHE-----VNFICADDAHGTPIM 56
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
+ A++ G+TP++ I +S + GF I +DN++ST S EN L + IY L +
Sbjct: 57 LKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLK-ENGF 115
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
I N+ I+Q +DP K +FLPDR++ +S
Sbjct: 116 IKNRTISQLYDPEKGMFLPDRFV-----------------------------------VS 140
Query: 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISR 251
G P+++ S+HFFF L + L+ W LQ ++ NK++EW E + WDISR
Sbjct: 141 GATPVMRDSEHFFFDLP--SFSEMLQAW-TRSGALQEQVANKMQEWFESGLQ--QWDISR 195
Query: 252 DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTE 311
DAPYFG +IPN KYFYVWLDAPIGY+ S KN +K G ++E D E
Sbjct: 196 DAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKD-----STAE 250
Query: 312 QYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLK 371
YHFIGKDI YFH LFWPA+L+ S + P+N+FVHG++T+NG KMSKS I +L
Sbjct: 251 LYHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLN 310
Query: 372 IGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGK 412
+ + LRYY +KL+++I+DID N + F+ VN+D++ K
Sbjct: 311 H-FDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNK 350
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 167 bits (424), Expect = 2e-47
Identities = 105/409 (25%), Positives = 172/409 (42%), Gaps = 62/409 (15%)
Query: 13 RIFVTTALPYANGELHIGHIM-EYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
R VT+ALPYANG +H GH+ Y+ ADI+VR+ ++ ++ V FIC D HG I
Sbjct: 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGED-----VVFICGTDEHGTPIS 57
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
A K G +P+E ++ K I FD + T+ + L Q+ + Y
Sbjct: 58 FRALKEGRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGH- 116
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
++ K Q + +FLPDR+ +
Sbjct: 117 LVKKVTKQAYCEHDKMFLPDRFA-----------------------------------IC 141
Query: 192 GTKPIIKSSKHFFFKLSD-KRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDIS 250
G + S H++ K+ D + + ++ +++ I+E LE+ D +
Sbjct: 142 GRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWG 201
Query: 251 RDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNT 310
P + K YVW +APIGY++ F++ G ++ + + T
Sbjct: 202 IPVPLDEEDMKG---KVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNID----GQT 254
Query: 311 EQYHFIGKDIFYFHILFWPAILKFSGR----------KLPNNIFVHGFMTINGKKMSKSN 360
HFIGKD FH +FWPA L G+ LP +I + ++T+ GKK S S
Sbjct: 255 RVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSR 314
Query: 361 KIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDL 409
I +L + ++LRYY+ + + + D DF+ F +N +L
Sbjct: 315 NWAIWVHEFLDV-FPADYLRYYLTT-IMPETRDSDFSFSDFKVRINEEL 361
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 148 bits (373), Expect = 2e-40
Identities = 85/398 (21%), Positives = 152/398 (38%), Gaps = 53/398 (13%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
+ +VTT + Y N E H+GH + AD R+ + +F+ D HG +
Sbjct: 3 KVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYR-----TFFLTGTDEHGETVY 57
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
AA+ AG PK F++ +S K+ D I +D++ T + +VQ + +Y
Sbjct: 58 RAAQAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVY----- 112
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
E + G +C C YT +L+ +
Sbjct: 113 -------------------------EAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIH 147
Query: 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISR 251
G + ++FF++ R D N++ L + +
Sbjct: 148 GRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPK 207
Query: 252 DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTE 311
+GI +P +VW DA + Y+++L E +
Sbjct: 208 SRVPWGIPLPWDENHVTFVWFDALLNYVSALDY---------------PEGEAYRTFWPH 252
Query: 312 QYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFM-TINGKKMSKSNKIGISPLYYL 370
+H IGKDI H +FWP +LK +G + ++ V GF+ +G+KMSK+ + P L
Sbjct: 253 AWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALL 312
Query: 371 KIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSD 408
+ + LRYY+ ++ +D + ++ + +D
Sbjct: 313 E-KYGRDALRYYLLREIPYG-QDTPVSEEALRTRYEAD 348
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 123 bits (308), Expect = 5e-31
Identities = 55/412 (13%), Positives = 118/412 (28%), Gaps = 44/412 (10%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
+ P G LH+GH ++ D +R++ M+ ++ D G A +
Sbjct: 37 VIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFE-----AVWLPGTDHAGIATQVVV 91
Query: 75 EKAGMTPKEFINNISSNRKKYLD------------------GFYIKFDNWYSTDSIENID 116
E+ + + +++ + G + T +
Sbjct: 92 ERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSR 151
Query: 117 LVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSS 176
V+ + Y++ ++ + P L D C+ ++
Sbjct: 152 AVRYAFSRYYHEGLAYRAPRL-VNWCPRCETTLSDLE----VETCSRCGTPIEYAIFPQW 206
Query: 177 IYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKE 236
L I + + D ++ ++ W I + ++I
Sbjct: 207 WLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMD--WLENVKDWNISRQL---WWGHQIPA 261
Query: 237 WLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYN 296
W +D + + D + +S G ++
Sbjct: 262 WYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETE 321
Query: 297 ELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAI-LKFSGRKLPNNIFVHGF-MTINGK 354
+L+ F G DI + + F G + + +HG + G+
Sbjct: 322 DLKAF-------YPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQ 374
Query: 355 KMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVN 406
KMSKS I PL ++ + LR+ + +DI + + N
Sbjct: 375 KMSKSKGNVIDPLEMVE-RYGADALRFALIYLATGG-QDIRLDLRWLEMARN 424
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 119 bits (298), Expect = 2e-29
Identities = 62/436 (14%), Positives = 113/436 (25%), Gaps = 43/436 (9%)
Query: 2 KKHDSEFKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFIC 61
+K K R V P ANG H+GH D++ R++ M+
Sbjct: 28 QKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYY-----APRRA 82
Query: 62 ADDAHGAAIMIAAEKAGMTPKE-----------------FINNISSNRKKYLDGFYIKFD 104
D HG + + EK + + + + + D
Sbjct: 83 GWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVD 142
Query: 105 NW--YSTDSIENIDLVQKIYDTLYNK--AKLIINKKINQFFDPIKNIFLPDRYIKGECPI 160
Y+T I+ + L+++ C
Sbjct: 143 LEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYPHCWR 202
Query: 161 CNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFF--------FKLSDKRC 212
C+ Y + + P + + LS R
Sbjct: 203 CSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRY 262
Query: 213 IDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPY-FGIKIPNTLEKYFYVW 271
+ + E + +E + K PY +++
Sbjct: 263 WGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRV 322
Query: 272 LDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAI 331
+ S F ++ E+ P I + +F+ L +
Sbjct: 323 PYVIDVWYDSGAMPFASLHYPFEHEEVFRESF----PADFIAEGIDQTRGWFNSLHQLGV 378
Query: 332 LKFSGRKLPNNIFVHGF-MTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNK 390
+ F G N+ HG + G+KMSKS + P ++ + LR+YI +
Sbjct: 379 MLF-GSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRK-FGADALRWYIYVSAPPE 436
Query: 391 IEDIDFNSQSFISCVN 406
D F V
Sbjct: 437 -ADRRFGPNLVRETVR 451
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 110 bits (275), Expect = 1e-26
Identities = 75/434 (17%), Positives = 134/434 (30%), Gaps = 48/434 (11%)
Query: 2 KKHDSEFKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFIC 61
K + K + PYANG LH+GH + I D VR++ MQ ++
Sbjct: 38 HKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFY-----APYVP 92
Query: 62 ADDAHGAAIMIAAEKAG-----MTPKEFINNISSNRKKYLDGFYIKF---------DNWY 107
D HG I A K G M+ EF + ++ F ++ Y
Sbjct: 93 GWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPY 152
Query: 108 STDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQY 167
T E +I+ + +K + KK ++ P L + I+ K
Sbjct: 153 ITLKPEYEAAQIRIFGEMADKGLIYKGKKP-VYWSPSSESSLAEAEIEYPHDWRTKKPVI 211
Query: 168 GDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKR--CIDFLRKWAIH--- 222
+ + + +I + + + + D+ I R W +
Sbjct: 212 FRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPV 271
Query: 223 ------DKRLQPEIVNKIKEWLEKDNKFNDWDI-SRDAPYFGIKIPNTLEKYFYVWLDAP 275
+ + E VN + + + ++ ++D G P + F D
Sbjct: 272 FYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIM 331
Query: 276 IGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFS 335
+ S + S + Y + +
Sbjct: 332 DVWFDSGSSHRGVLE-----------TRPELSFPADMYLEGSDQYRGWFNSSITTSVATR 380
Query: 336 GRKLPNNIFVHGF-MTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDI 394
G + HGF M GKKMSKS I P +K + R +++S + + D+
Sbjct: 381 GVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVK-QKGADIARLWVSS--TDYLADV 437
Query: 395 DFNSQSFISCVNSD 408
S + + D
Sbjct: 438 RI-SDEILKQTSDD 450
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS)
{Escherichia coli [TaxId: 562]}
Length = 162
Score = 103 bits (257), Expect = 2e-26
Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 4/158 (2%)
Query: 414 INIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQ 473
+N+ASR++ FI K F G L + + I + +E+R F K + ++
Sbjct: 2 VNLASRNAGFINKRFDGVL--ASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMAL 59
Query: 474 TNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLN 533
+ N + D+ PW +AK L I S + FR+L YLKP+LP L + E FLN
Sbjct: 60 ADLANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLN 119
Query: 534 ISPLQWINIFTPLTQNHKINKYRHLMTRVDKNIVDNLL 571
L W I PL HK+N ++ L R+D V+ L+
Sbjct: 120 T-ELTWDGIQQPLL-GHKVNPFKALYNRIDMRQVEALV 155
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 92.0 bits (227), Expect = 2e-20
Identities = 50/293 (17%), Positives = 85/293 (29%), Gaps = 42/293 (14%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
+V PY +G+LH+GH+ Y D+ RF+ MQ V DA G AA
Sbjct: 36 YVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYE-----VLHPMGWDAFGLPAENAA 90
Query: 75 EKAGMTPKEFINNISSNRKKYLD--GFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLI 132
K G+ PK++ K+ L G +D +T E Q I+ ++ K
Sbjct: 91 LKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEK---- 146
Query: 133 INKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSG 192
+ ++C C ++ +++
Sbjct: 147 --------------------------GLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHE 180
Query: 193 TKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRD 252
P+ K ++ I + + D + DW ISR
Sbjct: 181 DTPVEKRELEQWY-----LRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRLRDWLISRQ 235
Query: 253 APYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFI 305
+ E V + + + K + L EF
Sbjct: 236 RYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFY 288
>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS),
Zn-domain {Escherichia coli [TaxId: 562]}
Length = 35
Score = 68.2 bits (167), Expect = 2e-15
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 154 IKGECPICNAKDQYGDFCECCSSIYTPTKLINPYS 188
+KG CP C + DQYGD CE C + Y+PT+LI P S
Sbjct: 1 VKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKS 35
>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS),
Zn-domain {Pyrococcus abyssi [TaxId: 29292]}
Length = 35
Score = 66.2 bits (162), Expect = 7e-15
Identities = 18/33 (54%), Positives = 20/33 (60%)
Query: 154 IKGECPICNAKDQYGDFCECCSSIYTPTKLINP 186
+ G CP C A+DQ GD CE C TP LINP
Sbjct: 1 VIGTCPYCGAEDQKGDQCEVCGRPLTPEILINP 33
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 72.9 bits (177), Expect = 1e-14
Identities = 39/393 (9%), Positives = 72/393 (18%), Gaps = 92/393 (23%)
Query: 7 EFKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAH 66
+ + +V + +G +H+G+ E A I + V I D +
Sbjct: 12 RERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYE-----VRHIHMWDDY 66
Query: 67 GAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLY 126
+ IS +
Sbjct: 67 DRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMR------------------- 107
Query: 127 NKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINP 186
+ I + Y ++ E
Sbjct: 108 ----------KFEEEVEKLGIEVDLLYASELYKRGEYSEEIRLAFEKR------------ 145
Query: 187 YSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFND 246
L+ R I + +E +
Sbjct: 146 --------------DKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGW 191
Query: 247 WDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFIS 306
+ + W +
Sbjct: 192 KVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSH------------------------- 226
Query: 307 SPNTEQYHFIGKDIFYFHILFWPAILKFSG--RKLPNNIFVHGFMTINGK--KMSKSNKI 362
+ GKD + K ++ F+ I G+ KMS S
Sbjct: 227 --FGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGN 284
Query: 363 GISPLYYLKIGMNPEWLRYYIASKLNNKIEDID 395
I + + P +R+ A NK ID
Sbjct: 285 VILLSDLYE-VLEPGLVRFIYARHRPNKEIKID 316
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS)
{Pyrococcus abyssi [TaxId: 29292]}
Length = 210
Score = 64.9 bits (157), Expect = 1e-12
Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 5/165 (3%)
Query: 412 KYINIASRSSSFIEKYFKGYL--NMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYI 469
N R+ +F+ +YF G + + + + L ++ + + N F L
Sbjct: 3 NLGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKR 62
Query: 470 VIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVE 529
V+ +F N +FD +PWK + + L+ + L I L+P LP+ ++ +
Sbjct: 63 VMSLASFGNRYFDHKQPWK--TAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIW 120
Query: 530 TFLNISPLQWINIFTPLTQNHKINKYRHLMTRVDKNIVDNLLKNK 574
LN+ ++ F L HK+ K L +V + + + N
Sbjct: 121 HLLNLDEVKRWE-FRELPAGHKVRKPEILFKKVTDDQIIYFILNY 164
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 152
Score = 54.8 bits (131), Expect = 1e-09
Identities = 25/156 (16%), Positives = 59/156 (37%), Gaps = 8/156 (5%)
Query: 409 LIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLY 468
L N+ R+ + + ++ +G + L++ ++ ++ F+ L
Sbjct: 1 LADDLGNLVQRTRAMLFRFAEGRIPEP---VAGEELAEGTGLAGRLRPLVRELKFHVALE 57
Query: 469 IVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSV 528
+ +N + ++ KPW+L K E+ + R++E RI +I L P +P+ +
Sbjct: 58 EAMAYVKALNRYINEKKPWELFKKE--PEEARAVLYRVVEGLRIASILLTPAMPDKMAEL 115
Query: 529 ETFLNISP---LQWINIFTPLTQNHKINKYRHLMTR 561
L + L+ + + L +
Sbjct: 116 RRALGLKEEVRLEEAERWGLAEPRPIPEEAPVLFPK 151
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 52.6 bits (125), Expect = 4e-08
Identities = 47/381 (12%), Positives = 92/381 (24%), Gaps = 103/381 (27%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMT 80
HIGH ++ D+ R+ + ++ I+ A + G +
Sbjct: 30 ITVYDLCHIGHGRTFVAFDVVARYLRFLGYK-----LKYVRNITDIDDKIIKRANENGES 84
Query: 81 PKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQF 140
++ + + K D I + + +A I + I
Sbjct: 85 FVAMVDRMIAEMHKDFDALNI-------------------LRPDMEPRATHHIAEIIELT 125
Query: 141 FDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSS 200
I YG +
Sbjct: 126 EQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQ--------------------A 165
Query: 201 KHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKI 260
+ DKR W K + +G
Sbjct: 166 GARVDVVDDKRNPMDFVLW-----------------------KMSKEGEPSWPSPWGAGR 202
Query: 261 PNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDI 320
P + + L N F+ H G D+
Sbjct: 203 PGWHIECSAMNCK-------QLGNHFD-------------------------IHGGGSDL 230
Query: 321 FYFHILFWPAILKFSGRKLPNNIFVH-GFMTINGKKMSKSNKIGISPLYYLKIGMNPEWL 379
+ H A + N ++H G + ++ +KMSKS + LK + E +
Sbjct: 231 MFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLK-YYDAETV 289
Query: 380 RYYIASKLNNKIEDIDFNSQS 400
RY++ S ++++ ++
Sbjct: 290 RYFLMSGHYRS--QLNYSEEN 308
>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha
subunit {Oxytricha nova [TaxId: 200597]}
Length = 169
Score = 29.2 bits (65), Expect = 0.86
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 180 PTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAI 221
T+ IN +S T P SSKH + ++ + LRKWA
Sbjct: 121 VTQEINNQDAVSDTTPFSFSSKHATIEKNEISILQNLRKWAN 162
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 306
Score = 29.2 bits (64), Expect = 1.4
Identities = 27/270 (10%), Positives = 67/270 (24%), Gaps = 31/270 (11%)
Query: 25 GELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEF 84
G++H+GH Y+Q + Q D + + AD A + E +
Sbjct: 39 GKIHLGH---YLQIKKMIDLQNAGFD------IIILLADLH--AYLNQKGELDEIRKIGD 87
Query: 85 INNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPI 144
N + + D N+ + + + + + ++
Sbjct: 88 YNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIAREDENPKVA 147
Query: 145 KNIFLPDRYIKGE----CPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSS 200
+ I+ P + + + + + +L+G K S
Sbjct: 148 EVIY-PIMQVNDIHYLGVDVAVGGMEQRKIHMLARELLPKKVVCIHNPVLTGLDGEGKMS 206
Query: 201 KHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKI 260
+ + K +I++ + + I
Sbjct: 207 SSKGNFI-----------AVDDSPEEIRAKIKKAYCPAGVVEGNPIMEIAKYFLEYPLTI 255
Query: 261 PNTLEKYFYVWLDAPIGYLASLKNFFEKGG 290
+ D + L++ F+
Sbjct: 256 KRPEKFGG----DLTVNSYEELESLFKNKE 281
>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 132
Score = 26.3 bits (58), Expect = 5.9
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 21/93 (22%)
Query: 33 MEYIQADIWVRFQCMQQ----DNGKSRQVYFICADDAH-----------GAAIMIAAEKA 77
ME + AD+ + DN +R++ I G I ++ K
Sbjct: 1 MEALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKG 60
Query: 78 -----GMTPKEFINNISSNRKKYLDGFYIKFDN 105
+ + ++ DG +KF++
Sbjct: 61 TPEMRRQVLEAVVVRQRKPIRRP-DGTRVKFED 92
>d2uubd1 d.66.1.2 (D:2-209) Ribosomal protein S4 {Thermus
thermophilus [TaxId: 274]}
Length = 208
Score = 26.5 bits (58), Expect = 8.3
Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 15/81 (18%)
Query: 346 HGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQ-----S 400
HG +T+NG+++ + Y ++ G S+ I +
Sbjct: 122 HGHITVNGRRVDLPS-------YRVRPGDEIAV---AEKSRNLELIRQNLEAMKGRKVGP 171
Query: 401 FISCVNSDLIGKYINIASRSS 421
++S + GK++ + R
Sbjct: 172 WLSLDVEGMKGKFLRLPDRED 192
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB
{Escherichia coli [TaxId: 562]}
Length = 286
Score = 26.4 bits (57), Expect = 9.0
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 312 QYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNK 361
G D+ + + + G K+P+ I + + G K+SK N
Sbjct: 183 TEIVRGADLIEPTVRQIS-LYQLFGWKVPDYIHLPLALNPQGAKLSKQNH 231
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.432
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,355,112
Number of extensions: 120458
Number of successful extensions: 471
Number of sequences better than 10.0: 1
Number of HSP's gapped: 439
Number of HSP's successfully gapped: 44
Length of query: 576
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 486
Effective length of database: 1,171,896
Effective search space: 569541456
Effective search space used: 569541456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)