Query psy2395
Match_columns 570
No_of_seqs 633 out of 4847
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 23:56:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0216 PrfA Protein chain rel 100.0 3E-102 6E-107 763.5 35.1 314 1-314 1-317 (363)
2 TIGR00019 prfA peptide chain r 100.0 1.5E-86 3.3E-91 678.0 38.0 321 1-322 1-325 (360)
3 PRK00591 prfA peptide chain re 100.0 4.4E-85 9.5E-90 668.2 39.5 312 2-314 1-315 (359)
4 TIGR00020 prfB peptide chain r 100.0 1.3E-83 2.7E-88 658.6 35.9 312 7-323 23-340 (364)
5 PRK06746 peptide chain release 100.0 1.1E-83 2.5E-88 645.5 32.7 296 23-323 1-302 (326)
6 PRK00578 prfB peptide chain re 100.0 3.6E-83 7.7E-88 657.0 34.9 311 8-323 24-340 (367)
7 PRK05589 peptide chain release 100.0 9.4E-83 2E-87 640.9 33.8 295 23-322 1-300 (325)
8 PRK07342 peptide chain release 100.0 1E-81 2.2E-86 634.5 33.8 297 22-323 2-304 (339)
9 PRK08787 peptide chain release 100.0 1.9E-77 4E-82 595.4 31.5 265 45-314 2-269 (313)
10 KOG2726|consensus 100.0 6.8E-75 1.5E-79 583.6 30.3 294 18-322 52-352 (386)
11 COG1186 PrfB Protein chain rel 100.0 7.4E-65 1.6E-69 483.6 19.1 203 111-314 1-203 (239)
12 TIGR03072 release_prfH putativ 100.0 3.3E-62 7.2E-67 460.8 22.4 198 111-314 1-199 (200)
13 PRK08179 prfH peptide chain re 100.0 1.3E-61 2.9E-66 456.6 22.2 196 111-312 2-198 (200)
14 PRK14966 unknown domain/N5-glu 100.0 4.3E-42 9.4E-47 358.2 26.2 254 310-569 165-418 (423)
15 TIGR00536 hemK_fam HemK family 100.0 8.5E-41 1.9E-45 340.9 24.6 255 310-569 25-282 (284)
16 COG2890 HemK Methylase of poly 100.0 2.2E-40 4.7E-45 335.2 24.5 252 312-570 25-277 (280)
17 PRK01544 bifunctional N5-gluta 100.0 1.5E-40 3.3E-45 362.4 24.1 254 310-568 26-305 (506)
18 KOG2904|consensus 100.0 4.4E-36 9.5E-41 288.8 23.3 256 310-569 56-327 (328)
19 TIGR03533 L3_gln_methyl protei 100.0 6.4E-36 1.4E-40 304.3 22.2 237 310-552 31-270 (284)
20 PRK09328 N5-glutamine S-adenos 100.0 1.5E-35 3.2E-40 301.2 24.0 253 311-569 21-275 (275)
21 PRK11805 N5-glutamine S-adenos 100.0 1.4E-35 3E-40 304.5 23.1 249 310-566 43-294 (307)
22 TIGR03704 PrmC_rel_meth putati 100.0 1.4E-32 3E-37 274.9 21.8 219 340-567 27-250 (251)
23 TIGR03534 RF_mod_PrmC protein- 100.0 5.1E-32 1.1E-36 271.2 22.8 248 313-566 3-251 (251)
24 PF03462 PCRF: PCRF domain; I 100.0 1.1E-30 2.3E-35 229.0 13.8 109 70-178 7-115 (115)
25 PF00472 RF-1: RF-1 domain; I 100.0 1.7E-29 3.7E-34 220.4 7.2 100 214-313 6-105 (113)
26 PLN02672 methionine S-methyltr 100.0 4.2E-28 9.2E-33 278.7 20.8 196 360-557 79-304 (1082)
27 PF05175 MTS: Methyltransferas 99.8 3.2E-20 6.9E-25 175.2 16.7 140 368-536 2-144 (170)
28 PRK14967 putative methyltransf 99.8 9.1E-20 2E-24 179.7 20.5 177 365-553 4-181 (223)
29 PRK09256 hypothetical protein; 99.8 7.8E-21 1.7E-25 170.2 7.6 69 215-283 8-100 (138)
30 TIGR00537 hemK_rel_arch HemK-r 99.8 9.1E-19 2E-23 166.7 20.1 165 376-557 1-166 (179)
31 COG4123 Predicted O-methyltran 99.8 2.6E-19 5.7E-24 175.2 16.2 175 366-553 16-191 (248)
32 KOG3191|consensus 99.8 1.6E-18 3.5E-23 158.4 17.3 185 375-569 17-206 (209)
33 PRK14968 putative methyltransf 99.8 2E-17 4.2E-22 158.1 20.8 182 373-567 2-184 (188)
34 PRK15001 SAM-dependent 23S rib 99.7 5.6E-17 1.2E-21 170.1 19.6 141 367-533 198-341 (378)
35 PRK11727 23S rRNA mA1618 methy 99.7 7.1E-17 1.5E-21 165.5 19.8 200 365-569 71-305 (321)
36 COG2813 RsmC 16S RNA G1207 met 99.7 9.2E-17 2E-21 160.4 18.2 137 367-533 128-267 (300)
37 PLN02336 phosphoethanolamine N 99.7 8.3E-17 1.8E-21 176.3 16.4 187 323-554 201-412 (475)
38 PRK13168 rumA 23S rRNA m(5)U19 99.7 1.2E-15 2.6E-20 165.3 21.4 198 323-555 205-423 (443)
39 PF13659 Methyltransf_26: Meth 99.7 1.8E-16 4E-21 139.5 11.2 115 398-533 1-116 (117)
40 PRK10909 rsmD 16S rRNA m(2)G96 99.7 1E-15 2.2E-20 147.5 16.0 150 353-535 9-162 (199)
41 PRK09489 rsmC 16S ribosomal RN 99.7 2.4E-15 5.3E-20 156.7 19.5 137 367-534 166-305 (342)
42 PHA03411 putative methyltransf 99.7 2.1E-15 4.6E-20 149.9 15.8 155 374-551 46-209 (279)
43 PHA03412 putative methyltransf 99.6 3.7E-15 8.1E-20 144.9 14.0 147 374-550 31-196 (241)
44 PRK00107 gidB 16S rRNA methylt 99.6 2.7E-14 6E-19 136.4 19.1 139 396-569 44-186 (187)
45 COG2264 PrmA Ribosomal protein 99.6 2.1E-14 4.5E-19 144.5 18.2 156 367-557 130-289 (300)
46 TIGR01177 conserved hypothetic 99.6 9.1E-15 2E-19 152.5 16.2 135 396-556 181-315 (329)
47 TIGR00138 gidB 16S rRNA methyl 99.6 2.1E-14 4.5E-19 136.8 17.1 134 397-566 42-178 (181)
48 PLN02233 ubiquinone biosynthes 99.6 3.7E-14 8.1E-19 143.0 19.2 147 396-568 72-260 (261)
49 PRK11783 rlmL 23S rRNA m(2)G24 99.6 1.5E-14 3.3E-19 164.6 17.4 145 397-558 538-682 (702)
50 PF12847 Methyltransf_18: Meth 99.6 1.6E-14 3.4E-19 126.1 13.2 111 397-532 1-111 (112)
51 TIGR02752 MenG_heptapren 2-hep 99.6 7.7E-14 1.7E-18 138.1 19.1 145 396-569 44-231 (231)
52 PF01209 Ubie_methyltran: ubiE 99.6 8.3E-15 1.8E-19 144.8 11.1 106 396-530 46-151 (233)
53 COG2226 UbiE Methylase involve 99.6 5.8E-14 1.3E-18 137.8 16.5 143 396-568 50-236 (238)
54 KOG3429|consensus 99.6 3.1E-15 6.7E-20 133.4 6.3 69 215-283 35-128 (172)
55 COG2263 Predicted RNA methylas 99.6 1.8E-13 3.8E-18 127.2 17.9 145 376-556 24-168 (198)
56 PRK14902 16S rRNA methyltransf 99.6 2E-13 4.4E-18 148.1 21.2 168 374-553 229-405 (444)
57 PRK08287 cobalt-precorrin-6Y C 99.6 1.5E-13 3.2E-18 131.8 17.9 125 396-555 30-155 (187)
58 PRK10901 16S rRNA methyltransf 99.6 3.1E-13 6.8E-18 145.8 22.3 182 374-569 223-424 (427)
59 PF06325 PrmA: Ribosomal prote 99.6 1.6E-13 3.4E-18 139.5 18.6 160 368-568 130-293 (295)
60 COG2242 CobL Precorrin-6B meth 99.6 1.6E-13 3.4E-18 128.1 16.9 147 371-553 10-158 (187)
61 PRK00517 prmA ribosomal protei 99.5 4.5E-13 9.7E-18 134.4 19.7 147 369-557 89-239 (250)
62 PRK15128 23S rRNA m(5)C1962 me 99.5 2.7E-13 5.9E-18 143.9 18.4 154 367-545 189-354 (396)
63 PLN02490 MPBQ/MSBQ methyltrans 99.5 3.2E-13 6.9E-18 139.9 18.2 149 374-555 88-255 (340)
64 PF13847 Methyltransf_31: Meth 99.5 1.3E-13 2.9E-18 127.5 13.5 109 397-534 3-112 (152)
65 PRK11036 putative S-adenosyl-L 99.5 1.7E-13 3.7E-18 137.9 15.3 133 391-553 38-204 (255)
66 TIGR00406 prmA ribosomal prote 99.5 3.7E-13 8.1E-18 137.7 17.6 152 368-556 128-283 (288)
67 PRK13944 protein-L-isoaspartat 99.5 3E-13 6.4E-18 131.6 16.0 157 313-534 18-175 (205)
68 TIGR02085 meth_trns_rumB 23S r 99.5 4E-13 8.7E-18 142.3 18.2 154 365-554 198-354 (374)
69 TIGR00479 rumA 23S rRNA (uraci 99.5 6.2E-13 1.3E-17 143.9 18.7 155 366-554 258-418 (431)
70 PRK00377 cbiT cobalt-precorrin 99.5 7.7E-13 1.7E-17 128.0 17.3 125 396-550 39-164 (198)
71 TIGR00446 nop2p NOL1/NOP2/sun 99.5 1.3E-12 2.8E-17 132.1 19.0 161 374-547 50-218 (264)
72 PRK00121 trmB tRNA (guanine-N( 99.5 4.9E-13 1.1E-17 129.8 14.9 136 396-552 39-177 (202)
73 PRK03522 rumB 23S rRNA methylu 99.5 9.2E-13 2E-17 136.6 17.9 155 365-555 138-295 (315)
74 TIGR00080 pimt protein-L-isoas 99.5 6E-13 1.3E-17 130.4 15.5 104 396-534 76-179 (215)
75 PLN02244 tocopherol O-methyltr 99.5 1.2E-12 2.6E-17 137.1 18.7 130 396-555 117-277 (340)
76 PRK14904 16S rRNA methyltransf 99.5 1.3E-12 2.8E-17 141.8 18.8 166 372-551 227-401 (445)
77 TIGR00091 tRNA (guanine-N(7)-) 99.5 7.3E-13 1.6E-17 127.8 14.7 143 397-560 16-162 (194)
78 PF05971 Methyltransf_10: Prot 99.5 2.1E-12 4.6E-17 130.4 18.5 202 365-570 62-296 (299)
79 PRK13942 protein-L-isoaspartat 99.5 9.4E-13 2E-17 128.7 15.1 156 313-534 22-178 (212)
80 PRK14901 16S rRNA methyltransf 99.5 2.6E-12 5.6E-17 139.0 19.8 165 395-569 250-430 (434)
81 PTZ00098 phosphoethanolamine N 99.5 1.4E-12 3.1E-17 131.7 16.1 150 372-555 28-201 (263)
82 PRK11873 arsM arsenite S-adeno 99.4 2E-12 4.3E-17 131.4 16.8 132 396-556 76-230 (272)
83 TIGR00563 rsmB ribosomal RNA s 99.4 8.6E-12 1.9E-16 134.6 21.7 183 374-569 217-423 (426)
84 TIGR02469 CbiT precorrin-6Y C5 99.4 3.2E-12 7E-17 113.1 15.3 105 396-532 18-122 (124)
85 PRK14903 16S rRNA methyltransf 99.4 3E-12 6.5E-17 137.9 17.9 170 374-552 216-391 (431)
86 PF01170 UPF0020: Putative RNA 99.4 3.1E-12 6.8E-17 121.6 15.3 153 379-555 9-170 (179)
87 PF03602 Cons_hypoth95: Conser 99.4 7.8E-13 1.7E-17 125.9 11.0 142 364-535 7-156 (183)
88 COG2518 Pcm Protein-L-isoaspar 99.4 1.6E-12 3.5E-17 124.0 13.0 154 313-534 18-171 (209)
89 PRK11188 rrmJ 23S rRNA methylt 99.4 1.9E-12 4.2E-17 126.2 13.5 138 396-563 50-196 (209)
90 PRK05031 tRNA (uracil-5-)-meth 99.4 4.2E-12 9.2E-17 133.9 17.0 151 368-555 175-342 (362)
91 PRK14103 trans-aconitate 2-met 99.4 3.3E-12 7.2E-17 128.5 15.3 99 396-532 28-126 (255)
92 COG1041 Predicted DNA modifica 99.4 2.3E-12 5.1E-17 131.2 14.1 155 373-558 177-332 (347)
93 TIGR00095 RNA methyltransferas 99.4 3.1E-12 6.8E-17 122.6 14.1 141 364-535 15-162 (189)
94 TIGR00740 methyltransferase, p 99.4 5.5E-12 1.2E-16 125.7 16.4 109 395-531 51-160 (239)
95 PRK04266 fibrillarin; Provisio 99.4 1.8E-11 4E-16 120.4 19.4 140 395-568 70-224 (226)
96 TIGR00452 methyltransferase, p 99.4 1.8E-11 3.9E-16 126.0 19.8 185 328-556 63-273 (314)
97 PLN02396 hexaprenyldihydroxybe 99.4 3.1E-12 6.8E-17 132.1 14.3 128 397-555 131-288 (322)
98 PRK11207 tellurite resistance 99.4 5.2E-12 1.1E-16 122.1 14.7 127 397-556 30-170 (197)
99 COG2227 UbiG 2-polyprenyl-3-me 99.4 1.3E-12 2.9E-17 126.2 10.3 106 397-535 59-164 (243)
100 KOG1540|consensus 99.4 5.1E-12 1.1E-16 122.0 13.5 141 386-552 88-235 (296)
101 PRK07402 precorrin-6B methylas 99.4 1.2E-11 2.6E-16 119.4 16.3 126 396-554 39-168 (196)
102 PF01135 PCMT: Protein-L-isoas 99.4 6.7E-12 1.4E-16 121.9 14.4 157 313-534 18-174 (209)
103 PRK00216 ubiE ubiquinone/menaq 99.4 2.8E-11 6.1E-16 119.9 19.2 146 397-570 51-239 (239)
104 TIGR00477 tehB tellurite resis 99.4 3.6E-12 7.9E-17 123.0 12.1 125 397-555 30-168 (195)
105 PRK15451 tRNA cmo(5)U34 methyl 99.4 5.6E-12 1.2E-16 126.3 13.3 109 395-531 54-163 (247)
106 COG2519 GCD14 tRNA(1-methylade 99.4 5.7E-12 1.2E-16 122.8 12.6 128 395-556 92-220 (256)
107 PRK01683 trans-aconitate 2-met 99.3 7.2E-12 1.6E-16 126.2 13.0 102 396-533 30-131 (258)
108 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 4.7E-11 1E-15 117.0 18.4 143 396-569 38-223 (223)
109 PRK08317 hypothetical protein; 99.3 3.7E-11 8.1E-16 118.7 17.8 142 384-555 5-175 (241)
110 COG1092 Predicted SAM-dependen 99.3 1.4E-11 2.9E-16 129.4 15.3 119 398-535 218-339 (393)
111 smart00828 PKS_MT Methyltransf 99.3 1.4E-11 3.1E-16 121.2 14.6 128 399-556 1-144 (224)
112 PF08241 Methyltransf_11: Meth 99.3 5.7E-12 1.2E-16 105.8 9.9 95 402-530 1-95 (95)
113 PRK10258 biotin biosynthesis p 99.3 1.2E-11 2.6E-16 124.1 13.9 99 397-532 42-140 (251)
114 PLN02781 Probable caffeoyl-CoA 99.3 1.3E-11 2.9E-16 122.3 14.0 117 383-531 56-177 (234)
115 PF02384 N6_Mtase: N-6 DNA Met 99.3 1E-11 2.2E-16 128.6 13.3 165 375-548 27-205 (311)
116 PRK12335 tellurite resistance 99.3 2.5E-11 5.4E-16 124.3 15.7 125 397-555 120-258 (287)
117 PF13649 Methyltransf_25: Meth 99.3 4E-12 8.7E-17 109.1 8.1 98 401-526 1-101 (101)
118 KOG1271|consensus 99.3 3E-11 6.5E-16 111.0 13.6 154 382-556 47-205 (227)
119 TIGR02143 trmA_only tRNA (urac 99.3 5.2E-11 1.1E-15 125.2 17.4 151 368-555 166-333 (353)
120 PRK00312 pcm protein-L-isoaspa 99.3 8.9E-11 1.9E-15 114.8 17.9 100 396-533 77-176 (212)
121 COG0742 N6-adenine-specific me 99.3 5.1E-11 1.1E-15 112.0 14.8 144 364-536 8-158 (187)
122 PRK15068 tRNA mo(5)U34 methylt 99.3 9.4E-11 2E-15 121.7 18.3 129 397-556 122-274 (322)
123 COG4106 Tam Trans-aconitate me 99.3 7.9E-12 1.7E-16 117.9 8.7 108 396-539 29-136 (257)
124 PRK00811 spermidine synthase; 99.3 1E-10 2.2E-15 119.4 17.2 136 396-556 75-219 (283)
125 TIGR00438 rrmJ cell division p 99.3 4E-11 8.7E-16 115.0 13.4 136 396-562 31-176 (188)
126 COG2230 Cfa Cyclopropane fatty 99.3 4.5E-11 9.7E-16 119.6 14.0 105 395-530 70-174 (283)
127 PF08704 GCD14: tRNA methyltra 99.3 5.2E-11 1.1E-15 118.0 14.4 130 395-556 38-171 (247)
128 TIGR03587 Pse_Me-ase pseudamin 99.3 2.4E-11 5.3E-16 117.9 11.3 107 359-479 2-114 (204)
129 PLN02585 magnesium protoporphy 99.3 1.2E-10 2.6E-15 120.0 16.8 107 366-479 109-221 (315)
130 PF10672 Methyltrans_SAM: S-ad 99.3 5.9E-11 1.3E-15 120.0 14.0 154 367-547 92-255 (286)
131 TIGR03840 TMPT_Se_Te thiopurin 99.3 5E-11 1.1E-15 116.4 12.9 143 384-553 21-184 (213)
132 COG2265 TrmA SAM-dependent met 99.3 1.1E-10 2.3E-15 125.0 16.5 151 367-551 260-415 (432)
133 PTZ00146 fibrillarin; Provisio 99.3 2.9E-10 6.2E-15 114.7 18.4 130 395-556 130-271 (293)
134 PRK06922 hypothetical protein; 99.3 4.8E-11 1E-15 131.1 13.4 120 397-533 418-538 (677)
135 TIGR02072 BioC biotin biosynth 99.2 1.1E-10 2.3E-15 115.6 14.6 116 383-532 20-135 (240)
136 smart00650 rADc Ribosomal RNA 99.2 5.7E-11 1.2E-15 112.0 11.7 78 396-482 12-89 (169)
137 TIGR02987 met_A_Alw26 type II 99.2 9.3E-11 2E-15 130.0 15.0 171 374-547 4-216 (524)
138 PF05401 NodS: Nodulation prot 99.2 2.9E-10 6.2E-15 107.3 15.5 140 397-569 43-194 (201)
139 COG2521 Predicted archaeal met 99.2 2.9E-11 6.2E-16 115.3 8.9 139 396-559 133-280 (287)
140 PRK05134 bifunctional 3-demeth 99.2 3.3E-10 7.2E-15 112.3 17.0 128 396-555 47-204 (233)
141 PLN02476 O-methyltransferase 99.2 1.2E-10 2.6E-15 117.2 13.9 120 380-531 103-227 (278)
142 PF02353 CMAS: Mycolic acid cy 99.2 1.2E-10 2.6E-15 117.9 13.9 114 387-531 51-165 (273)
143 PRK13943 protein-L-isoaspartat 99.2 1.7E-10 3.7E-15 119.2 14.8 103 396-533 79-181 (322)
144 PRK04457 spermidine synthase; 99.2 4.3E-10 9.3E-15 113.5 17.3 147 396-567 65-214 (262)
145 PF05958 tRNA_U5-meth_tr: tRNA 99.2 2.1E-10 4.6E-15 120.5 15.6 152 367-555 164-332 (352)
146 TIGR02716 C20_methyl_CrtF C-20 99.2 4E-10 8.6E-15 116.5 17.3 129 396-555 148-305 (306)
147 PRK05785 hypothetical protein; 99.2 4.5E-10 9.9E-15 110.9 16.9 142 385-568 40-223 (226)
148 PF03848 TehB: Tellurite resis 99.2 1.9E-10 4.2E-15 109.5 13.6 124 397-556 30-169 (192)
149 PRK14121 tRNA (guanine-N(7)-)- 99.2 4.2E-10 9E-15 118.0 17.3 128 397-547 122-251 (390)
150 PF08242 Methyltransf_12: Meth 99.2 2.5E-12 5.5E-17 109.8 0.5 98 402-528 1-99 (99)
151 PF13489 Methyltransf_23: Meth 99.2 1.9E-10 4E-15 106.6 12.8 116 396-553 21-160 (161)
152 PF01596 Methyltransf_3: O-met 99.2 1.6E-10 3.5E-15 111.8 12.4 119 381-531 31-154 (205)
153 TIGR02021 BchM-ChlM magnesium 99.2 4.5E-10 9.7E-15 110.4 15.7 133 397-561 55-211 (219)
154 PRK11705 cyclopropane fatty ac 99.2 2.6E-10 5.7E-15 121.0 14.8 101 396-531 166-266 (383)
155 PRK11088 rrmA 23S rRNA methylt 99.2 1.5E-10 3.3E-15 117.6 12.1 120 384-544 72-194 (272)
156 TIGR01983 UbiG ubiquinone bios 99.2 7E-10 1.5E-14 109.1 16.0 127 397-555 45-202 (224)
157 KOG3420|consensus 99.2 8.2E-11 1.8E-15 104.1 7.3 97 381-484 31-128 (185)
158 COG4122 Predicted O-methyltran 99.1 5E-10 1.1E-14 108.5 13.4 118 381-530 45-164 (219)
159 COG0116 Predicted N6-adenine-s 99.1 9.1E-10 2E-14 114.0 15.8 133 379-532 172-344 (381)
160 TIGR03438 probable methyltrans 99.1 1.4E-09 3.1E-14 112.1 16.6 135 374-533 38-178 (301)
161 PF02475 Met_10: Met-10+ like- 99.1 4.5E-10 9.8E-15 108.0 11.8 126 367-529 72-199 (200)
162 PRK13255 thiopurine S-methyltr 99.1 4.6E-10 1E-14 110.0 12.1 141 385-552 25-186 (218)
163 PF08003 Methyltransf_9: Prote 99.1 9.9E-09 2.2E-13 103.0 21.5 187 327-556 56-267 (315)
164 cd02440 AdoMet_MTases S-adenos 99.1 6.8E-10 1.5E-14 93.4 11.2 103 400-531 1-103 (107)
165 PRK07580 Mg-protoporphyrin IX 99.1 2.2E-09 4.7E-14 106.0 16.4 133 396-561 62-219 (230)
166 PRK01581 speE spermidine synth 99.1 3.5E-09 7.7E-14 109.6 18.4 178 369-568 119-312 (374)
167 PRK03612 spermidine synthase; 99.1 1.1E-09 2.3E-14 121.1 15.3 133 396-549 296-437 (521)
168 KOG1270|consensus 99.1 1.1E-10 2.4E-15 113.7 6.2 101 398-531 90-194 (282)
169 TIGR00417 speE spermidine synt 99.1 4E-09 8.7E-14 107.0 17.7 150 396-568 71-231 (270)
170 PLN02366 spermidine synthase 99.1 3E-09 6.4E-14 109.4 16.2 144 367-532 58-206 (308)
171 smart00138 MeTrc Methyltransfe 99.1 6E-10 1.3E-14 112.6 10.9 111 397-533 99-243 (264)
172 PRK11783 rlmL 23S rRNA m(2)G24 99.1 2.7E-09 5.9E-14 121.8 17.0 138 379-536 170-351 (702)
173 PLN03075 nicotianamine synthas 99.1 2.1E-09 4.5E-14 108.9 14.1 147 397-569 123-274 (296)
174 KOG1541|consensus 99.1 1.6E-09 3.4E-14 102.7 11.9 130 397-551 50-182 (270)
175 PLN02336 phosphoethanolamine N 99.1 1.3E-09 2.8E-14 119.6 13.3 125 397-552 37-178 (475)
176 PRK06202 hypothetical protein; 99.0 1.4E-09 3.1E-14 107.8 12.1 79 396-481 59-140 (232)
177 PRK04338 N(2),N(2)-dimethylgua 99.0 3.4E-09 7.4E-14 112.2 14.5 101 398-532 58-158 (382)
178 PLN02589 caffeoyl-CoA O-methyl 99.0 4.1E-09 8.9E-14 104.8 14.0 119 380-530 64-188 (247)
179 PRK11933 yebU rRNA (cytosine-C 99.0 8.6E-09 1.9E-13 111.6 17.4 144 395-548 111-262 (470)
180 KOG2187|consensus 99.0 2.2E-09 4.8E-14 113.5 12.0 159 354-545 333-504 (534)
181 TIGR02081 metW methionine bios 99.0 5E-09 1.1E-13 101.0 12.9 75 396-482 12-87 (194)
182 PTZ00338 dimethyladenosine tra 99.0 1.5E-09 3.2E-14 111.1 9.3 81 396-484 35-115 (294)
183 PRK00274 ksgA 16S ribosomal RN 99.0 1.9E-09 4.2E-14 109.5 10.1 78 396-483 41-118 (272)
184 PRK14896 ksgA 16S ribosomal RN 99.0 2.8E-09 6E-14 107.5 11.1 77 396-483 28-104 (258)
185 COG2520 Predicted methyltransf 99.0 9.2E-09 2E-13 106.0 14.3 144 367-549 159-313 (341)
186 PF09445 Methyltransf_15: RNA 99.0 1.5E-09 3.4E-14 100.5 7.6 78 400-482 2-81 (163)
187 PF07021 MetW: Methionine bios 98.9 1.4E-08 3E-13 95.8 13.5 70 396-477 12-82 (193)
188 TIGR00308 TRM1 tRNA(guanine-26 98.9 1.6E-08 3.4E-13 106.6 15.1 102 398-531 45-146 (374)
189 PRK13256 thiopurine S-methyltr 98.9 6.7E-09 1.5E-13 101.7 10.8 137 384-546 30-188 (226)
190 COG0286 HsdM Type I restrictio 98.9 1.3E-08 2.8E-13 111.4 13.5 167 374-546 166-346 (489)
191 COG4976 Predicted methyltransf 98.9 1.8E-09 3.9E-14 102.9 5.5 121 398-556 126-265 (287)
192 PF05724 TPMT: Thiopurine S-me 98.9 8.6E-09 1.9E-13 101.0 10.3 142 386-554 26-188 (218)
193 PF02390 Methyltransf_4: Putat 98.9 3.2E-08 7E-13 95.4 13.4 135 398-553 18-157 (195)
194 PLN02823 spermine synthase 98.8 7.4E-08 1.6E-12 100.2 16.2 140 396-556 102-250 (336)
195 KOG4300|consensus 98.8 1.3E-08 2.9E-13 95.7 9.1 109 398-536 77-187 (252)
196 PF10294 Methyltransf_16: Puta 98.8 4.1E-08 8.8E-13 92.9 12.1 127 381-534 22-158 (173)
197 KOG2899|consensus 98.8 2.2E-08 4.8E-13 96.4 8.7 47 397-444 58-104 (288)
198 COG0144 Sun tRNA and rRNA cyto 98.8 3.7E-07 8E-12 96.1 18.8 166 373-547 134-307 (355)
199 TIGR00755 ksgA dimethyladenosi 98.8 8.1E-08 1.8E-12 96.6 13.1 76 396-482 28-106 (253)
200 KOG2915|consensus 98.8 3.3E-07 7.2E-12 89.8 16.2 132 396-559 104-238 (314)
201 KOG2361|consensus 98.7 4.2E-08 9.1E-13 94.6 9.3 129 399-554 73-235 (264)
202 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.7 6.4E-07 1.4E-11 91.4 15.8 162 374-547 64-238 (283)
203 PF04816 DUF633: Family of unk 98.7 5.3E-07 1.1E-11 87.3 14.4 121 401-553 1-121 (205)
204 COG0220 Predicted S-adenosylme 98.6 3E-07 6.6E-12 90.3 12.4 115 399-535 50-167 (227)
205 PF05185 PRMT5: PRMT5 arginine 98.6 3.5E-07 7.6E-12 98.8 13.3 105 398-529 187-294 (448)
206 PF12147 Methyltransf_20: Puta 98.6 1.7E-06 3.6E-11 86.3 16.6 149 396-568 134-310 (311)
207 PRK04148 hypothetical protein; 98.6 2E-07 4.3E-12 83.5 9.0 81 386-479 4-87 (134)
208 COG3129 Predicted SAM-dependen 98.6 4E-07 8.7E-12 87.1 11.4 190 365-557 37-260 (292)
209 COG0030 KsgA Dimethyladenosine 98.6 1.9E-07 4.2E-12 92.7 9.2 81 396-484 29-109 (259)
210 PLN02232 ubiquinone biosynthes 98.6 4.5E-07 9.8E-12 84.7 11.0 115 426-566 1-157 (160)
211 KOG1663|consensus 98.6 7.9E-07 1.7E-11 85.6 12.6 119 381-531 59-182 (237)
212 PF03291 Pox_MCEL: mRNA cappin 98.6 7.2E-07 1.6E-11 92.7 13.0 115 397-534 62-188 (331)
213 KOG1499|consensus 98.5 2.8E-07 6.1E-12 94.0 9.4 74 397-476 60-133 (346)
214 COG0421 SpeE Spermidine syntha 98.5 2.3E-06 5E-11 86.8 16.0 113 397-533 76-191 (282)
215 PF01564 Spermine_synth: Sperm 98.5 1.6E-06 3.6E-11 86.6 14.8 147 383-553 63-216 (246)
216 KOG1661|consensus 98.5 9.5E-07 2.1E-11 83.6 11.7 108 395-534 80-195 (237)
217 PF06080 DUF938: Protein of un 98.5 2.9E-06 6.3E-11 81.3 14.8 144 397-568 25-203 (204)
218 PF01861 DUF43: Protein of unk 98.4 1.1E-05 2.4E-10 78.8 17.2 131 397-559 44-181 (243)
219 KOG2912|consensus 98.4 5.7E-06 1.2E-10 82.7 14.7 200 367-570 65-289 (419)
220 PF11599 AviRa: RRNA methyltra 98.4 4E-06 8.6E-11 79.7 13.0 136 379-530 32-212 (246)
221 PF02527 GidB: rRNA small subu 98.4 3.5E-06 7.6E-11 80.3 12.5 119 399-552 50-171 (184)
222 KOG2671|consensus 98.4 2.9E-07 6.2E-12 92.8 5.2 132 395-533 206-355 (421)
223 PF00891 Methyltransf_2: O-met 98.4 4.1E-06 8.9E-11 83.5 13.6 97 396-530 99-197 (241)
224 KOG0820|consensus 98.4 1.7E-06 3.7E-11 85.0 10.3 82 394-483 55-136 (315)
225 PRK00050 16S rRNA m(4)C1402 me 98.4 1.1E-06 2.3E-11 89.6 9.0 79 396-479 18-99 (296)
226 KOG2730|consensus 98.4 3.9E-07 8.5E-12 86.6 5.1 99 377-482 76-177 (263)
227 KOG1975|consensus 98.4 2.1E-06 4.5E-11 86.2 10.4 127 395-546 115-249 (389)
228 PF05148 Methyltransf_8: Hypot 98.4 3.3E-06 7.2E-11 80.6 11.3 124 384-560 61-187 (219)
229 PRK10611 chemotaxis methyltran 98.4 3.4E-06 7.3E-11 85.8 11.7 112 397-533 115-263 (287)
230 COG1352 CheR Methylase of chem 98.3 2.6E-06 5.7E-11 85.6 10.2 114 397-534 96-243 (268)
231 PRK10742 putative methyltransf 98.3 2.6E-06 5.6E-11 84.0 9.6 82 400-484 91-178 (250)
232 KOG3010|consensus 98.3 1E-06 2.3E-11 85.2 6.4 98 399-528 35-132 (261)
233 PF01739 CheR: CheR methyltran 98.3 3.4E-06 7.4E-11 81.2 10.1 125 384-533 13-176 (196)
234 KOG1500|consensus 98.3 3.8E-06 8.3E-11 84.3 10.0 121 397-548 177-304 (517)
235 PRK01544 bifunctional N5-gluta 98.3 8.9E-06 1.9E-10 89.7 13.9 135 397-552 347-484 (506)
236 PRK00536 speE spermidine synth 98.3 2.1E-05 4.5E-10 78.9 14.7 154 363-555 36-198 (262)
237 COG0357 GidB Predicted S-adeno 98.3 2E-05 4.3E-10 76.5 14.0 122 398-555 68-194 (215)
238 TIGR00478 tly hemolysin TlyA f 98.2 1E-05 2.2E-10 79.7 12.1 39 397-437 75-113 (228)
239 PF01728 FtsJ: FtsJ-like methy 98.2 6.6E-06 1.4E-10 78.3 9.5 142 397-568 23-179 (181)
240 COG3963 Phospholipid N-methylt 98.2 1.3E-05 2.9E-10 73.3 10.7 107 396-533 47-158 (194)
241 PF05891 Methyltransf_PK: AdoM 98.2 2.3E-05 5E-10 75.6 12.8 129 398-555 56-200 (218)
242 COG2384 Predicted SAM-dependen 98.2 2.7E-05 5.9E-10 74.8 13.0 125 396-552 15-139 (226)
243 COG0293 FtsJ 23S rRNA methylas 98.2 3E-05 6.6E-10 74.3 13.0 140 395-563 43-190 (205)
244 PF01269 Fibrillarin: Fibrilla 98.1 0.00024 5.2E-09 68.7 17.8 142 396-569 72-227 (229)
245 COG4262 Predicted spermidine s 98.1 6.8E-05 1.5E-09 76.5 14.2 181 366-567 255-449 (508)
246 PF05219 DREV: DREV methyltran 98.1 4.4E-05 9.6E-10 75.4 12.2 118 397-555 94-239 (265)
247 PF00398 RrnaAD: Ribosomal RNA 98.0 2.6E-05 5.6E-10 78.9 9.8 78 396-481 29-108 (262)
248 KOG3045|consensus 98.0 5.4E-05 1.2E-09 74.0 11.3 106 396-552 179-287 (325)
249 PF06962 rRNA_methylase: Putat 98.0 0.0001 2.2E-09 66.5 11.9 111 424-552 1-121 (140)
250 COG3897 Predicted methyltransf 97.8 3.5E-05 7.6E-10 72.5 6.3 103 397-535 79-181 (218)
251 COG4076 Predicted RNA methylas 97.8 3.7E-05 8E-10 71.6 6.3 70 398-476 33-102 (252)
252 PF07942 N2227: N2227-like pro 97.8 0.00045 9.7E-09 69.5 14.4 131 397-556 56-242 (270)
253 KOG2940|consensus 97.8 4.1E-05 9E-10 73.4 6.5 88 385-481 61-148 (325)
254 TIGR00497 hsdM type I restrict 97.8 0.00022 4.8E-09 78.8 13.0 154 374-534 195-357 (501)
255 PF13578 Methyltransf_24: Meth 97.8 3.3E-05 7.1E-10 66.6 4.7 100 402-530 1-103 (106)
256 KOG1122|consensus 97.7 0.00048 1E-08 71.9 12.8 163 395-563 239-407 (460)
257 PF08123 DOT1: Histone methyla 97.6 0.00044 9.5E-09 67.1 10.9 83 395-478 40-130 (205)
258 TIGR03439 methyl_EasF probable 97.6 0.0014 3E-08 67.9 15.1 136 374-533 51-198 (319)
259 PRK13699 putative methylase; P 97.6 0.00026 5.6E-09 70.0 9.1 90 453-552 2-92 (227)
260 PF02005 TRM: N2,N2-dimethylgu 97.6 0.00038 8.3E-09 73.8 10.8 106 397-532 49-154 (377)
261 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.6 0.0007 1.5E-08 67.7 11.7 137 397-556 56-239 (256)
262 TIGR01444 fkbM_fam methyltrans 97.6 0.00025 5.4E-09 64.4 7.7 59 400-462 1-59 (143)
263 PF13679 Methyltransf_32: Meth 97.5 0.0003 6.6E-09 64.1 7.7 79 396-476 24-105 (141)
264 cd00315 Cyt_C5_DNA_methylase C 97.5 0.002 4.4E-08 65.5 14.2 143 400-566 2-159 (275)
265 PF11968 DUF3321: Putative met 97.5 0.0011 2.3E-08 64.1 11.1 128 382-555 31-180 (219)
266 PRK11760 putative 23S rRNA C24 97.5 0.0045 9.8E-08 63.9 16.1 86 379-478 185-278 (357)
267 COG1867 TRM1 N2,N2-dimethylgua 97.5 0.00065 1.4E-08 70.1 10.0 102 398-532 53-154 (380)
268 KOG4589|consensus 97.5 0.0014 3.1E-08 61.3 11.1 136 396-560 68-212 (232)
269 TIGR00006 S-adenosyl-methyltra 97.4 0.00056 1.2E-08 70.1 9.4 86 388-478 10-100 (305)
270 COG1189 Predicted rRNA methyla 97.4 0.0035 7.5E-08 61.2 13.6 123 396-556 78-224 (245)
271 COG0500 SmtA SAM-dependent met 97.3 0.0035 7.6E-08 55.5 12.2 102 401-533 52-156 (257)
272 KOG3201|consensus 97.3 0.00033 7.2E-09 63.9 4.8 145 381-552 12-162 (201)
273 PF03141 Methyltransf_29: Puta 97.3 0.00062 1.4E-08 73.0 7.6 114 400-553 120-250 (506)
274 COG1889 NOP1 Fibrillarin-like 97.3 0.014 3E-07 55.6 15.4 127 396-555 75-213 (231)
275 PF09243 Rsm22: Mitochondrial 97.3 0.0059 1.3E-07 62.1 14.2 126 397-552 33-164 (274)
276 PRK11524 putative methyltransf 97.3 0.00074 1.6E-08 69.1 7.7 91 452-552 8-99 (284)
277 KOG2198|consensus 97.2 0.0044 9.6E-08 64.1 12.7 162 396-564 154-334 (375)
278 PF04445 SAM_MT: Putative SAM- 97.2 0.0014 3.1E-08 64.4 8.5 81 399-482 77-163 (234)
279 PF03059 NAS: Nicotianamine sy 97.2 0.0033 7.1E-08 63.6 11.1 146 397-569 120-271 (276)
280 KOG1709|consensus 97.1 0.0052 1.1E-07 58.8 11.0 109 395-534 99-208 (271)
281 PF07091 FmrO: Ribosomal RNA m 97.0 0.0032 6.8E-08 62.2 9.1 85 384-476 93-177 (251)
282 PF04672 Methyltransf_19: S-ad 97.0 0.013 2.9E-07 58.7 12.9 140 382-548 51-211 (267)
283 KOG3178|consensus 97.0 0.006 1.3E-07 62.9 10.8 96 398-530 178-273 (342)
284 PF10237 N6-adenineMlase: Prob 96.9 0.019 4.2E-07 53.5 12.5 136 381-560 10-148 (162)
285 PF01555 N6_N4_Mtase: DNA meth 96.9 0.0026 5.6E-08 62.1 7.1 54 384-440 178-231 (231)
286 PRK11524 putative methyltransf 96.8 0.0034 7.4E-08 64.2 7.8 58 384-444 195-252 (284)
287 COG1568 Predicted methyltransf 96.8 0.02 4.4E-07 56.8 12.5 130 397-558 152-290 (354)
288 KOG3115|consensus 96.7 0.012 2.5E-07 56.0 9.7 119 397-533 60-184 (249)
289 PRK01747 mnmC bifunctional tRN 96.6 0.011 2.3E-07 68.0 10.7 131 397-552 57-223 (662)
290 PRK13699 putative methylase; P 96.5 0.0086 1.9E-07 59.2 7.7 58 384-444 150-207 (227)
291 KOG3987|consensus 96.4 0.00067 1.5E-08 64.3 -0.3 41 397-440 112-152 (288)
292 COG0275 Predicted S-adenosylme 96.4 0.018 3.9E-07 58.2 9.4 79 395-477 21-103 (314)
293 PF07669 Eco57I: Eco57I restri 96.3 0.0052 1.1E-07 53.2 4.6 65 470-547 2-72 (106)
294 PF10354 DUF2431: Domain of un 96.3 0.034 7.3E-07 52.2 10.4 138 404-556 3-152 (166)
295 PF05430 Methyltransf_30: S-ad 96.3 0.018 3.9E-07 51.3 8.1 94 451-570 31-124 (124)
296 PF04989 CmcI: Cephalosporin h 96.2 0.0094 2E-07 57.5 6.1 122 397-548 32-181 (206)
297 KOG1269|consensus 96.1 0.016 3.4E-07 61.1 7.5 105 396-530 109-213 (364)
298 KOG1253|consensus 96.0 0.0058 1.3E-07 65.3 4.0 106 396-532 108-216 (525)
299 PF03141 Methyltransf_29: Puta 96.0 0.015 3.3E-07 62.6 7.0 137 400-569 368-506 (506)
300 KOG2793|consensus 96.0 0.091 2E-06 52.2 12.0 112 397-536 86-203 (248)
301 PF01795 Methyltransf_5: MraW 95.9 0.011 2.4E-07 60.6 5.3 78 395-477 18-100 (310)
302 KOG2798|consensus 95.9 0.082 1.8E-06 53.6 11.2 37 398-437 151-187 (369)
303 TIGR00675 dcm DNA-methyltransf 95.5 0.19 4.2E-06 52.2 12.7 142 401-566 1-156 (315)
304 KOG1331|consensus 95.4 0.025 5.3E-07 56.8 5.5 117 373-531 26-142 (293)
305 KOG2078|consensus 95.4 0.012 2.6E-07 61.8 3.3 89 368-464 223-312 (495)
306 COG4798 Predicted methyltransf 95.3 0.19 4.1E-06 47.7 10.7 136 396-552 47-201 (238)
307 PF01555 N6_N4_Mtase: DNA meth 95.3 0.023 5.1E-07 55.3 5.0 77 471-553 1-80 (231)
308 PHA01634 hypothetical protein 95.3 0.082 1.8E-06 46.6 7.6 47 397-445 28-74 (156)
309 KOG4058|consensus 95.3 0.05 1.1E-06 49.2 6.3 77 384-464 58-135 (199)
310 KOG2352|consensus 95.3 0.18 4E-06 54.3 11.7 110 399-530 50-159 (482)
311 PF00145 DNA_methylase: C-5 cy 94.8 0.046 1E-06 56.5 5.9 131 400-555 2-141 (335)
312 KOG1562|consensus 94.8 0.06 1.3E-06 54.2 6.2 114 396-531 120-235 (337)
313 COG1064 AdhP Zn-dependent alco 94.7 0.18 4E-06 52.4 9.8 90 395-530 164-257 (339)
314 KOG1596|consensus 94.3 0.2 4.4E-06 49.0 8.3 108 395-534 154-263 (317)
315 PRK10458 DNA cytosine methylas 94.3 0.23 4.9E-06 54.3 9.7 78 398-482 88-181 (467)
316 KOG1501|consensus 93.9 0.1 2.2E-06 55.1 5.8 55 398-456 67-121 (636)
317 KOG1099|consensus 93.9 0.25 5.4E-06 48.1 7.8 131 398-558 42-189 (294)
318 KOG0822|consensus 93.7 0.13 2.9E-06 55.5 6.3 104 398-529 368-475 (649)
319 KOG1227|consensus 93.6 0.044 9.6E-07 55.2 2.5 74 397-476 194-268 (351)
320 COG0270 Dcm Site-specific DNA 93.6 0.15 3.2E-06 53.3 6.6 147 398-567 3-164 (328)
321 PF07757 AdoMet_MTase: Predict 92.3 0.15 3.3E-06 43.7 3.5 32 397-431 58-89 (112)
322 KOG3350|consensus 92.1 3.6 7.8E-05 38.6 12.4 166 334-543 11-183 (217)
323 COG4301 Uncharacterized conser 91.9 4 8.7E-05 40.4 13.1 138 374-534 54-195 (321)
324 COG2961 ComJ Protein involved 91.7 3.3 7.2E-05 41.0 12.3 116 402-550 93-216 (279)
325 PF05711 TylF: Macrocin-O-meth 91.0 1.7 3.6E-05 43.5 9.9 136 397-560 74-242 (248)
326 PTZ00357 methyltransferase; Pr 89.9 1.2 2.5E-05 50.0 8.2 78 399-476 702-798 (1072)
327 COG0863 DNA modification methy 89.8 0.62 1.3E-05 47.6 6.0 99 453-553 17-120 (302)
328 PRK09424 pntA NAD(P) transhydr 89.7 2 4.4E-05 47.5 10.2 42 397-440 164-206 (509)
329 COG5459 Predicted rRNA methyla 89.7 0.78 1.7E-05 47.4 6.4 110 397-532 113-225 (484)
330 PF04378 RsmJ: Ribosomal RNA s 89.6 0.84 1.8E-05 45.5 6.4 117 402-551 62-186 (245)
331 COG1565 Uncharacterized conser 89.5 3.5 7.7E-05 43.1 11.0 49 396-444 76-131 (370)
332 PF06460 NSP13: Coronavirus NS 88.5 7.2 0.00016 38.9 11.8 118 396-546 60-184 (299)
333 COG3510 CmcI Cephalosporin hyd 87.7 2.5 5.4E-05 40.2 7.7 125 397-548 69-211 (237)
334 KOG2352|consensus 87.3 1 2.3E-05 48.6 5.7 111 397-530 295-414 (482)
335 PF06859 Bin3: Bicoid-interact 87.0 0.21 4.6E-06 43.1 0.3 58 509-566 21-106 (110)
336 KOG2651|consensus 86.9 1.9 4.1E-05 45.2 7.1 43 397-441 153-195 (476)
337 PRK15057 UDP-glucose 6-dehydro 86.9 11 0.00024 40.4 13.3 140 407-568 7-162 (388)
338 PF03686 UPF0146: Uncharacteri 86.4 1.7 3.6E-05 38.6 5.6 66 397-479 13-80 (127)
339 PF00107 ADH_zinc_N: Zinc-bind 86.0 0.88 1.9E-05 40.0 3.8 85 407-532 1-89 (130)
340 COG0863 DNA modification methy 86.0 2.6 5.7E-05 42.9 7.8 58 384-444 209-266 (302)
341 PF02086 MethyltransfD12: D12 84.9 1.4 3.1E-05 43.9 5.1 51 386-439 8-59 (260)
342 PF02254 TrkA_N: TrkA-N domain 84.9 5.9 0.00013 34.1 8.5 106 406-552 4-113 (116)
343 PRK10636 putative ABC transpor 84.2 3.1 6.8E-05 47.6 8.1 57 4-60 567-626 (638)
344 PF05063 MT-A70: MT-A70 ; Int 83.8 4.3 9.4E-05 38.3 7.6 74 471-554 1-75 (176)
345 KOG2360|consensus 83.7 2.5 5.5E-05 44.4 6.3 85 395-482 211-296 (413)
346 KOG3924|consensus 82.7 4.7 0.0001 42.6 7.8 84 394-478 189-280 (419)
347 COG1063 Tdh Threonine dehydrog 82.5 5.3 0.00011 42.1 8.5 45 397-442 168-213 (350)
348 PRK09880 L-idonate 5-dehydroge 82.5 8.9 0.00019 40.0 10.1 43 397-440 169-212 (343)
349 cd08283 FDH_like_1 Glutathione 81.7 4.3 9.2E-05 43.2 7.5 45 396-441 183-228 (386)
350 COG4889 Predicted helicase [Ge 80.8 6 0.00013 45.8 8.2 186 376-563 816-1056(1518)
351 PRK10884 SH3 domain-containing 80.4 16 0.00034 35.6 10.1 26 2-27 88-113 (206)
352 PRK15182 Vi polysaccharide bio 79.3 22 0.00048 38.6 12.0 144 398-567 6-174 (425)
353 PF03269 DUF268: Caenorhabditi 79.3 5.2 0.00011 37.1 6.0 130 398-556 2-145 (177)
354 PLN02353 probable UDP-glucose 79.2 13 0.00028 41.0 10.2 62 507-568 102-178 (473)
355 PF02636 Methyltransf_28: Puta 78.7 3.6 7.7E-05 41.2 5.3 47 398-444 19-72 (252)
356 cd08237 ribitol-5-phosphate_DH 77.6 14 0.00031 38.4 9.8 45 396-440 162-207 (341)
357 cd08254 hydroxyacyl_CoA_DH 6-h 77.2 20 0.00042 36.8 10.6 43 396-440 164-207 (338)
358 KOG2920|consensus 77.0 1.9 4E-05 43.6 2.7 54 380-435 95-152 (282)
359 PRK11147 ABC transporter ATPas 76.7 7 0.00015 44.7 7.6 45 4-48 572-617 (635)
360 COG0677 WecC UDP-N-acetyl-D-ma 75.0 7.1 0.00015 41.4 6.3 117 399-546 10-144 (436)
361 cd05188 MDR Medium chain reduc 74.9 15 0.00032 36.1 8.6 43 396-440 133-176 (271)
362 cd08230 glucose_DH Glucose deh 74.6 18 0.00039 37.8 9.6 42 397-440 172-217 (355)
363 PRK07533 enoyl-(acyl carrier p 74.5 18 0.00039 35.9 9.2 80 397-481 9-99 (258)
364 PRK08594 enoyl-(acyl carrier p 73.6 37 0.0008 33.7 11.2 82 397-481 6-98 (257)
365 KOG0024|consensus 73.2 7.3 0.00016 40.2 5.8 44 396-440 168-212 (354)
366 PF07279 DUF1442: Protein of u 73.2 84 0.0018 30.7 12.7 77 397-477 41-122 (218)
367 PF13561 adh_short_C2: Enoyl-( 72.8 6.7 0.00014 38.5 5.5 121 405-532 1-133 (241)
368 COG0338 Dam Site-specific DNA 72.1 30 0.00065 35.1 10.0 92 453-557 157-252 (274)
369 KOG0995|consensus 72.0 32 0.0007 38.0 10.6 94 4-99 232-327 (581)
370 PRK06079 enoyl-(acyl carrier p 71.9 18 0.00039 35.8 8.4 77 398-481 7-94 (252)
371 COG1004 Ugd Predicted UDP-gluc 71.7 69 0.0015 34.2 12.7 139 407-570 7-173 (414)
372 COG1743 Adenine-specific DNA m 71.5 9.5 0.00021 43.7 6.7 88 469-556 488-616 (875)
373 KOG1098|consensus 71.5 6.2 0.00013 43.9 5.1 37 396-432 43-79 (780)
374 KOG0804|consensus 71.4 45 0.00097 35.8 11.2 93 8-102 348-450 (493)
375 PRK08415 enoyl-(acyl carrier p 71.1 29 0.00063 34.9 9.8 79 398-481 5-94 (274)
376 PF08317 Spc7: Spc7 kinetochor 70.9 1.4E+02 0.003 31.1 15.2 121 3-150 180-300 (325)
377 TIGR02822 adh_fam_2 zinc-bindi 69.8 33 0.00071 35.5 10.1 43 396-440 164-207 (329)
378 PRK08213 gluconate 5-dehydroge 69.3 26 0.00056 34.5 8.9 79 397-480 11-99 (259)
379 PRK07523 gluconate 5-dehydroge 69.2 26 0.00057 34.4 8.9 80 397-481 9-98 (255)
380 COG1748 LYS9 Saccharopine dehy 69.2 33 0.00072 36.7 9.9 75 399-482 2-81 (389)
381 PRK07454 short chain dehydroge 69.1 27 0.00058 33.9 8.9 79 398-481 6-94 (241)
382 TIGR00027 mthyl_TIGR00027 meth 68.8 50 0.0011 33.2 10.8 62 397-461 81-142 (260)
383 TIGR01202 bchC 2-desacetyl-2-h 68.7 24 0.00053 36.1 8.8 42 397-439 144-186 (308)
384 PLN03154 putative allyl alcoho 68.5 23 0.0005 37.1 8.7 43 396-440 157-201 (348)
385 PRK06701 short chain dehydroge 67.9 38 0.00082 34.4 10.0 79 398-481 46-135 (290)
386 PRK06949 short chain dehydroge 67.7 31 0.00068 33.8 9.1 79 397-480 8-96 (258)
387 PRK08293 3-hydroxybutyryl-CoA 67.6 28 0.00061 35.4 8.9 43 400-443 5-47 (287)
388 PRK06172 short chain dehydroge 67.6 27 0.00059 34.2 8.6 79 398-481 7-95 (253)
389 PF14740 DUF4471: Domain of un 67.4 8.1 0.00018 39.5 4.8 38 517-554 239-287 (289)
390 PF05050 Methyltransf_21: Meth 67.2 11 0.00024 34.2 5.3 42 403-444 1-47 (167)
391 PRK09545 znuA high-affinity zi 66.2 1.3E+02 0.0028 31.1 13.5 56 25-101 144-199 (311)
392 PRK07984 enoyl-(acyl carrier p 66.0 73 0.0016 31.8 11.5 79 398-481 6-95 (262)
393 PRK07576 short chain dehydroge 65.8 33 0.00072 34.1 8.9 78 397-479 8-95 (264)
394 PRK08945 putative oxoacyl-(acy 65.8 25 0.00054 34.4 7.9 79 397-479 11-101 (247)
395 PRK10904 DNA adenine methylase 65.7 23 0.0005 35.9 7.7 86 452-551 157-242 (271)
396 COG5570 Uncharacterized small 65.6 34 0.00074 25.3 6.2 49 3-53 1-53 (57)
397 PRK05786 fabG 3-ketoacyl-(acyl 65.5 58 0.0012 31.4 10.4 76 398-479 5-90 (238)
398 PRK07814 short chain dehydroge 65.4 29 0.00063 34.4 8.4 79 397-480 9-97 (263)
399 PRK06940 short chain dehydroge 65.4 18 0.00038 36.4 6.9 76 400-481 4-87 (275)
400 PRK07666 fabG 3-ketoacyl-(acyl 64.4 34 0.00073 33.2 8.5 78 398-480 7-94 (239)
401 KOG4174|consensus 64.1 51 0.0011 33.0 9.2 144 397-552 56-213 (282)
402 PRK05599 hypothetical protein; 64.0 37 0.00079 33.4 8.7 78 400-481 2-88 (246)
403 TIGR00561 pntA NAD(P) transhyd 63.5 30 0.00066 38.4 8.6 42 397-440 163-205 (511)
404 KOG0971|consensus 63.4 88 0.0019 36.6 12.1 62 37-98 284-350 (1243)
405 PRK07326 short chain dehydroge 63.0 29 0.00064 33.5 7.8 76 398-479 6-91 (237)
406 PRK07806 short chain dehydroge 63.0 1.2E+02 0.0027 29.3 12.3 78 398-480 6-94 (248)
407 PRK08643 acetoin reductase; Va 62.9 76 0.0017 31.0 10.9 78 399-481 3-90 (256)
408 PRK09343 prefoldin subunit bet 62.9 57 0.0012 28.8 8.7 51 1-56 1-51 (121)
409 PRK07774 short chain dehydroge 62.8 39 0.00085 32.9 8.7 79 398-481 6-94 (250)
410 PRK08862 short chain dehydroge 62.6 57 0.0012 31.7 9.8 77 398-479 5-92 (227)
411 TIGR00571 dam DNA adenine meth 62.6 55 0.0012 33.0 9.8 86 452-551 155-240 (266)
412 PRK08217 fabG 3-ketoacyl-(acyl 62.5 40 0.00087 32.7 8.7 79 398-481 5-93 (253)
413 PRK11546 zraP zinc resistance 62.4 20 0.00043 32.7 5.7 37 11-49 69-105 (143)
414 PF03721 UDPG_MGDP_dh_N: UDP-g 62.2 61 0.0013 30.8 9.5 135 407-568 7-173 (185)
415 PRK07066 3-hydroxybutyryl-CoA 62.2 1.4E+02 0.0029 31.2 12.8 42 399-443 8-51 (321)
416 PRK07889 enoyl-(acyl carrier p 62.1 39 0.00083 33.5 8.6 77 398-481 7-96 (256)
417 KOG1760|consensus 62.1 91 0.002 27.5 9.4 70 28-97 15-105 (131)
418 PRK05867 short chain dehydroge 62.1 39 0.00086 33.1 8.6 80 397-481 8-97 (253)
419 PRK08159 enoyl-(acyl carrier p 62.1 88 0.0019 31.3 11.3 79 398-481 10-99 (272)
420 PRK06603 enoyl-(acyl carrier p 62.0 67 0.0015 31.8 10.3 79 398-481 8-97 (260)
421 TIGR03451 mycoS_dep_FDH mycoth 61.9 22 0.00047 37.3 7.0 43 396-440 175-219 (358)
422 cd08281 liver_ADH_like1 Zinc-d 61.2 23 0.00051 37.3 7.2 43 396-440 190-234 (371)
423 PRK05854 short chain dehydroge 61.1 88 0.0019 32.1 11.3 81 398-481 14-104 (313)
424 PF10458 Val_tRNA-synt_C: Valy 61.0 20 0.00042 28.0 4.9 56 4-61 8-64 (66)
425 PRK08265 short chain dehydroge 61.0 43 0.00092 33.2 8.7 76 398-481 6-91 (261)
426 cd08293 PTGR2 Prostaglandin re 60.4 30 0.00065 35.7 7.7 41 399-441 156-199 (345)
427 PRK07370 enoyl-(acyl carrier p 59.7 81 0.0018 31.2 10.4 79 398-481 6-98 (258)
428 cd08232 idonate-5-DH L-idonate 59.3 58 0.0012 33.5 9.6 42 397-440 165-208 (339)
429 PF03446 NAD_binding_2: NAD bi 59.1 28 0.0006 32.2 6.4 108 401-553 4-117 (163)
430 TIGR00634 recN DNA repair prot 58.8 3.1E+02 0.0067 30.9 18.2 101 19-145 289-394 (563)
431 TIGR01963 PHB_DH 3-hydroxybuty 58.4 59 0.0013 31.6 9.1 76 400-480 3-88 (255)
432 PRK12826 3-ketoacyl-(acyl-carr 58.3 61 0.0013 31.4 9.2 79 398-481 6-94 (251)
433 COG0497 RecN ATPase involved i 58.3 3.1E+02 0.0068 30.8 16.9 135 8-168 274-419 (557)
434 PRK06124 gluconate 5-dehydroge 58.3 52 0.0011 32.2 8.7 80 397-481 10-99 (256)
435 PF03514 GRAS: GRAS domain fam 57.7 98 0.0021 33.0 11.1 61 397-457 110-180 (374)
436 PRK07035 short chain dehydroge 57.6 56 0.0012 31.9 8.8 79 398-481 8-96 (252)
437 PRK07102 short chain dehydroge 57.4 50 0.0011 32.1 8.3 78 400-481 3-87 (243)
438 PRK09496 trkA potassium transp 57.2 54 0.0012 35.5 9.4 66 400-476 2-71 (453)
439 PF13710 ACT_5: ACT domain; PD 56.9 35 0.00076 26.3 5.6 36 133-168 7-42 (63)
440 PF03915 AIP3: Actin interacti 56.9 1.2E+02 0.0026 32.9 11.5 55 5-59 218-272 (424)
441 KOG1201|consensus 56.8 51 0.0011 33.8 8.2 76 397-480 37-124 (300)
442 PF05206 TRM13: Methyltransfer 56.8 23 0.00051 35.7 5.8 37 396-432 17-57 (259)
443 PRK07097 gluconate 5-dehydroge 56.5 59 0.0013 32.2 8.8 80 397-481 9-98 (265)
444 COG2933 Predicted SAM-dependen 56.3 52 0.0011 33.1 7.9 83 382-478 188-278 (358)
445 PLN02253 xanthoxin dehydrogena 56.3 42 0.00091 33.5 7.8 77 398-480 18-104 (280)
446 PRK07677 short chain dehydroge 56.2 50 0.0011 32.4 8.2 76 399-479 2-87 (252)
447 PF02153 PDH: Prephenate dehyd 55.9 33 0.00072 34.4 6.8 29 411-440 1-29 (258)
448 PRK12481 2-deoxy-D-gluconate 3 55.6 61 0.0013 31.9 8.7 78 397-481 7-94 (251)
449 PRK08251 short chain dehydroge 55.4 76 0.0016 30.8 9.3 80 399-481 3-92 (248)
450 TIGR00518 alaDH alanine dehydr 55.0 42 0.00091 35.7 7.7 42 397-440 166-208 (370)
451 cd01019 ZnuA Zinc binding prot 54.9 2.3E+02 0.0051 28.7 13.0 57 24-101 119-175 (286)
452 TIGR03545 conserved hypothetic 54.7 74 0.0016 35.8 9.8 19 121-139 287-305 (555)
453 PRK08339 short chain dehydroge 54.3 63 0.0014 32.1 8.6 79 398-480 8-95 (263)
454 COG1255 Uncharacterized protei 54.3 27 0.00059 30.5 4.9 62 398-476 14-76 (129)
455 cd08295 double_bond_reductase_ 54.0 67 0.0014 33.1 9.0 44 396-441 150-195 (338)
456 cd08239 THR_DH_like L-threonin 53.5 50 0.0011 34.0 8.0 43 396-440 162-206 (339)
457 PRK12384 sorbitol-6-phosphate 53.4 77 0.0017 31.1 9.0 79 399-481 3-92 (259)
458 COG4353 Uncharacterized conser 53.3 27 0.00058 32.2 4.9 52 509-560 70-134 (192)
459 PRK09260 3-hydroxybutyryl-CoA 53.2 95 0.0021 31.5 9.8 41 400-442 3-44 (288)
460 PRK07890 short chain dehydroge 53.2 66 0.0014 31.4 8.5 78 398-480 5-92 (258)
461 PRK05565 fabG 3-ketoacyl-(acyl 53.1 62 0.0013 31.2 8.2 78 399-481 6-94 (247)
462 PRK05650 short chain dehydroge 52.7 71 0.0015 31.7 8.7 77 400-481 2-88 (270)
463 PRK06139 short chain dehydroge 52.6 55 0.0012 34.1 8.1 78 398-480 7-94 (330)
464 PRK00578 prfB peptide chain re 52.5 1.6E+02 0.0034 31.3 11.3 24 1-24 1-24 (367)
465 PRK06125 short chain dehydroge 52.4 69 0.0015 31.5 8.5 80 398-481 7-92 (259)
466 KOG1209|consensus 52.0 50 0.0011 32.4 6.8 73 397-478 6-89 (289)
467 TIGR02825 B4_12hDH leukotriene 51.9 1.5E+02 0.0033 30.2 11.3 43 396-440 137-181 (325)
468 PF05869 Dam: DNA N-6-adenine- 51.6 31 0.00068 32.8 5.5 10 472-481 65-74 (181)
469 TIGR03206 benzo_BadH 2-hydroxy 51.4 79 0.0017 30.7 8.7 79 398-481 3-91 (250)
470 PRK09496 trkA potassium transp 51.3 21 0.00046 38.7 4.9 71 398-478 231-305 (453)
471 PF00106 adh_short: short chai 51.2 96 0.0021 27.9 8.7 78 400-482 2-92 (167)
472 PLN02586 probable cinnamyl alc 51.1 75 0.0016 33.3 8.9 38 396-435 182-220 (360)
473 COG0604 Qor NADPH:quinone redu 51.0 50 0.0011 34.4 7.4 97 396-532 141-241 (326)
474 PRK11152 ilvM acetolactate syn 50.7 45 0.00097 26.9 5.4 44 132-175 17-60 (76)
475 cd08245 CAD Cinnamyl alcohol d 50.7 1.2E+02 0.0027 30.8 10.3 42 396-439 161-203 (330)
476 PRK05876 short chain dehydroge 50.6 74 0.0016 31.9 8.5 79 398-481 6-94 (275)
477 PRK06505 enoyl-(acyl carrier p 50.5 1.4E+02 0.0029 29.9 10.4 78 398-480 7-95 (271)
478 PRK06935 2-deoxy-D-gluconate 3 50.5 81 0.0017 31.0 8.6 79 397-481 14-102 (258)
479 PRK08416 7-alpha-hydroxysteroi 50.3 2.3E+02 0.0049 27.8 11.9 79 397-479 7-96 (260)
480 PRK06720 hypothetical protein; 50.2 1.1E+02 0.0025 28.4 9.1 79 398-481 16-104 (169)
481 PRK11064 wecC UDP-N-acetyl-D-m 50.1 3.5E+02 0.0076 29.2 14.0 40 508-547 95-136 (415)
482 PRK10869 recombination and rep 50.0 1.8E+02 0.0039 32.8 12.1 66 30-95 293-363 (553)
483 COG1340 Uncharacterized archae 49.7 2.4E+02 0.0052 28.9 11.6 58 8-67 108-165 (294)
484 PRK06113 7-alpha-hydroxysteroi 49.6 84 0.0018 30.8 8.6 79 398-481 11-99 (255)
485 PRK09242 tropinone reductase; 49.4 99 0.0021 30.3 9.1 81 398-481 9-99 (257)
486 PF02737 3HCDH_N: 3-hydroxyacy 49.4 2.3E+02 0.005 26.6 11.5 100 401-533 2-115 (180)
487 cd05278 FDH_like Formaldehyde 49.2 59 0.0013 33.4 7.7 44 396-440 166-210 (347)
488 PRK08277 D-mannonate oxidoredu 49.2 87 0.0019 31.1 8.7 78 398-480 10-97 (278)
489 PRK07819 3-hydroxybutyryl-CoA 49.2 1.6E+02 0.0035 30.0 10.7 42 400-444 7-50 (286)
490 cd08294 leukotriene_B4_DH_like 49.1 1.2E+02 0.0027 30.7 10.0 43 396-440 142-186 (329)
491 TIGR00571 dam DNA adenine meth 48.8 28 0.00062 35.1 5.1 48 385-437 13-60 (266)
492 KOG0821|consensus 48.7 25 0.00054 34.3 4.3 60 397-462 50-109 (326)
493 PRK08324 short chain dehydroge 48.5 1.3E+02 0.0027 34.9 10.9 78 398-481 422-509 (681)
494 PRK07478 short chain dehydroge 48.4 97 0.0021 30.3 8.8 78 398-480 6-93 (254)
495 smart00806 AIP3 Actin interact 48.0 2E+02 0.0043 31.1 11.1 53 5-57 222-274 (426)
496 PF11899 DUF3419: Protein of u 47.9 58 0.0013 34.8 7.4 46 395-443 33-78 (380)
497 PRK05866 short chain dehydroge 47.9 1.1E+02 0.0024 30.9 9.4 78 398-480 40-127 (293)
498 COG1062 AdhC Zn-dependent alco 47.4 44 0.00095 35.0 6.0 46 395-441 183-229 (366)
499 PRK06128 oxidoreductase; Provi 47.0 1.4E+02 0.0031 30.2 10.0 78 398-480 55-144 (300)
500 PF06160 EzrA: Septation ring 47.0 1.4E+02 0.0031 33.6 10.8 94 5-108 349-442 (560)
No 1
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-102 Score=763.46 Aligned_cols=314 Identities=57% Similarity=0.864 Sum_probs=310.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhC---ChhHHHH
Q psy2395 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEMLN---DLEMRNF 77 (570)
Q Consensus 1 ~~~~~~~~l~~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~~---D~~~~~~ 77 (570)
|+++|+++|+++..||.+|+.+|++|++.+|++++++++||+++|+++++.|.+|++..++++++++|+. |+||++|
T Consensus 1 ~~~~~~~kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~em 80 (363)
T COG0216 1 MKPSLLEKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREM 80 (363)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999994 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCC
Q psy2395 78 ALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIG 157 (570)
Q Consensus 78 a~~e~~~~~~~~~~~~~~l~~~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~ 157 (570)
|++|+..++.++..++++|+.+|+|+||+|.+|||||||||+||+||++||.+||+||.+||+.+||++++++.++++.|
T Consensus 81 a~~Ei~~~~~~~~~le~~L~~lLlPkDpnd~knvilEIRagtGGdEAalFagDLfrMY~rYAe~kgWk~ei~s~se~~~G 160 (363)
T COG0216 81 AEEEIKELEAKIEELEEELKILLLPKDPNDDKNIILEIRAGTGGDEAALFAGDLFRMYSRYAESKGWKVEILSASESELG 160 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCeEEEEecCCCchHHHHHHHHHHHHHHHHHHhCCCEEEEeecCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEeccchhhhhhhhcCcceeEEeCCCCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCccc
Q psy2395 158 GYKEIIARIIGLNVYSKLKFESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHI 237 (570)
Q Consensus 158 g~~~~~~~~~g~~~~~~~~~e~G~hr~~r~~~~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~v 237 (570)
|||++++.|+|.+||+.||||+|||||||||.|+++||+|||+|||+|+|++++..++.|+++||+|+||||||+|||||
T Consensus 161 G~kEii~~I~G~gvys~LKfEsGvHRVQRVP~TEsqGRIHTStaTVaVlPE~ee~~ei~I~~~DlrIDt~RsSGaGGQhV 240 (363)
T COG0216 161 GYKEIIASISGKGVYSRLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEVEEVEEIEINPKDLRIDTFRSSGAGGQHV 240 (363)
T ss_pred CceEEEEEEeccchhhhhhhccCccceeccccccCCCceeecceeEEeccCCCcccccccChHHceeeeeecCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999998876799999999999999999999999
Q ss_pred ccccceEEEEecCCceEEEEeccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh
Q psy2395 238 NKTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI 314 (570)
Q Consensus 238 nk~~s~v~~~h~p~gi~~~~~~~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~ 314 (570)
|||+|||||||+||||+|.||++||||+||++||+.|++||++++.++++++.++.|++|+|+|+||++|||||||+
T Consensus 241 NtTdSAVRiTHlPTGIvV~cQderSQ~kNk~kAmkvL~ARl~~~~~~~~~~~~~~~RksqVGSGDRSErIRTYNfPQ 317 (363)
T COG0216 241 NTTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEASERKSQVGSGDRSERIRTYNFPQ 317 (363)
T ss_pred CccchhheeeecCCceEEEecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987
No 2
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=100.00 E-value=1.5e-86 Score=678.01 Aligned_cols=321 Identities=53% Similarity=0.817 Sum_probs=310.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh--CChhHHHHH
Q psy2395 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEML--NDLEMRNFA 78 (570)
Q Consensus 1 ~~~~~~~~l~~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~--~D~~~~~~a 78 (570)
|+|+|..+++++.+++.+|++.+++|+||+|++++++++++++.|+++++.|++|.+...+++++.+|+ +|+||+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~le~~~~~p~~w~d~~~~~~~~k~~~~l~~~v~~~~~~~~~~~~~~~~~el~~~~D~e~~~~a 80 (360)
T TIGR00019 1 MKPSLLEKLESLLERYEELEALLSDPEVISDQDKLRKLSKEYSQLEEIVDCYREYQQAQEDIKEAKEILEESDPEMREMA 80 (360)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999998 499999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCC
Q psy2395 79 LDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGG 158 (570)
Q Consensus 79 ~~e~~~~~~~~~~~~~~l~~~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g 158 (570)
++|+..+..++++++.+|..+++|++|+|.++|+|||+||+||+||++||++|++||.+||+++||++++++..+++.+|
T Consensus 81 ~~e~~~l~~~~~~~e~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g 160 (360)
T TIGR00019 81 KEELEELEEKIEELEEQLKVLLLPKDPNDEKNVILEIRAGTGGDEAAIFAGDLFRMYSRYAESKGWKVEILSANETELGG 160 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCeEEEEECCCCcHHHHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeccchhhhhhhhcCcceeEEeCCCCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccc
Q psy2395 159 YKEIIARIIGLNVYSKLKFESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHIN 238 (570)
Q Consensus 159 ~~~~~~~~~g~~~~~~~~~e~G~hr~~r~~~~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vn 238 (570)
+|+|++.|+|++||++|++|+|||||||+|||++++|+||||++|.|+|.+++.. +.|+++||+++|+|||||||||||
T Consensus 161 ~ksa~l~i~G~~ay~~lk~E~GvHrv~Rvp~~~s~~R~hTsfa~V~v~P~~~~~~-~~i~~~dl~~~~~RssG~GGQ~VN 239 (360)
T TIGR00019 161 YKEVIAEIKGDGVYSRLKFESGVHRVQRVPVTESQGRIHTSAATVAVMPELEEVE-VDINPADLRIDTFRSSGAGGQHVN 239 (360)
T ss_pred ceEEEEEEecccHHHHHhhcCeeEEEECCCCCCCCCCeecceeEEEEEcCCCccc-cccCcccEEEEEEECCCCCCCCcC
Confidence 9999999999999999999999999999999999999999999999999997754 899999999999999999999999
Q ss_pred cccceEEEEecCCceEEEEeccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh--hh
Q psy2395 239 KTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI--LL 316 (570)
Q Consensus 239 k~~s~v~~~h~p~gi~~~~~~~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~--LL 316 (570)
||+|||||+|+||||+|.||++|||++||+.|+++|+++|++...+++..+....|+.+++.++||++|||||||+ +-
T Consensus 240 kt~SaVrl~h~ptgi~V~~~~eRSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~Rs~~IRtY~~~~~rV~ 319 (360)
T TIGR00019 240 TTDSAVRITHLPTGIVVECQDERSQHKNKDKAMKVLRARLYEAEQEKQQAAQASTRKSQVGSGDRSERIRTYNFPQNRVT 319 (360)
T ss_pred ceeeeEEEEECCCcEEEEECCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceecccCCeEEEECCCCeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999975 33
Q ss_pred Hhhhcc
Q psy2395 317 KYVTRL 322 (570)
Q Consensus 317 ~~~l~~ 322 (570)
.|.+|.
T Consensus 320 DhRtg~ 325 (360)
T TIGR00019 320 DHRINL 325 (360)
T ss_pred eeccCC
Confidence 444443
No 3
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=100.00 E-value=4.4e-85 Score=668.24 Aligned_cols=312 Identities=56% Similarity=0.868 Sum_probs=305.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh---CChhHHHHH
Q psy2395 2 KHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEML---NDLEMRNFA 78 (570)
Q Consensus 2 ~~~~~~~l~~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~---~D~~~~~~a 78 (570)
.|.|+++++.+.+++.+|++.+++|+||+|+++++++.++++.|+++++.|+++....++++++++|+ +|++|++++
T Consensus 1 ~~~~~~~~e~~~~~~~~le~~~~~~~~w~d~~~~~~~~~e~~~L~~~v~~~~~~~~~~~~~~~~~~l~~~e~D~~~~~~~ 80 (359)
T PRK00591 1 KPSMLDKLEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEAKEMLEEESDPEMREMA 80 (359)
T ss_pred CchHHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999998 489999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCC
Q psy2395 79 LDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGG 158 (570)
Q Consensus 79 ~~e~~~~~~~~~~~~~~l~~~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g 158 (570)
++|+..+..++++++.+|..+++|++|+|.++|+|||+||+||+||++||++|++||.+||+++||++++++..+++.+|
T Consensus 81 ~~e~~~l~~~l~~~e~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g 160 (359)
T PRK00591 81 KEELKELEERLEELEEELKILLLPKDPNDDKNVILEIRAGTGGDEAALFAGDLFRMYSRYAERQGWKVEILSASEGELGG 160 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCeEEEEECCCChHHHHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeccchhhhhhhhcCcceeEEeCCCCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccc
Q psy2395 159 YKEIIARIIGLNVYSKLKFESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHIN 238 (570)
Q Consensus 159 ~~~~~~~~~g~~~~~~~~~e~G~hr~~r~~~~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vn 238 (570)
+++|++.|+|++||++|++|+|||||||+|+|++++|+||||++|.|+|.+++. ++.|+++||+++|+|||||||||||
T Consensus 161 ~ksa~l~i~G~~ay~~Lk~E~GvHrv~R~p~~~s~~R~~tsfa~V~v~P~~~~~-~~~i~~~dl~~~~~RssG~GGQ~VN 239 (359)
T PRK00591 161 YKEVIAEISGDGVYSKLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEAEEV-EVEINPKDLRIDTFRSSGAGGQHVN 239 (359)
T ss_pred eeEEEEEEecccHHHHHhhcCeeEEEEeeCCCCCCCceecceEEEEEEcCCCcc-ccccCcccEEEEEEECCCCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999875 4999999999999999999999999
Q ss_pred cccceEEEEecCCceEEEEeccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh
Q psy2395 239 KTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI 314 (570)
Q Consensus 239 k~~s~v~~~h~p~gi~~~~~~~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~ 314 (570)
||+|||||+|+||||+|.|+++|||++||+.|+++|+++|++.+.+++.++.+..|+.+++.++||++||||||++
T Consensus 240 kt~saVrl~H~ptGi~v~~~~eRSQ~~Nk~~Al~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtY~f~~ 315 (359)
T PRK00591 240 TTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEAATRKSQVGSGDRSERIRTYNFPQ 315 (359)
T ss_pred ceeeeEEEEECCCcEEEEECCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCeeeEECCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999976
No 4
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=100.00 E-value=1.3e-83 Score=658.62 Aligned_cols=312 Identities=39% Similarity=0.528 Sum_probs=294.4
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHH
Q psy2395 7 SKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEML---NDLEMRNFALDEIN 83 (570)
Q Consensus 7 ~~l~~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~---~D~~~~~~a~~e~~ 83 (570)
-+|+++.+|+.+|+..|++|+||+|++++++++++++.|+++++.|++|.+..+|++++.+|+ +|++|+++|.+|+.
T Consensus 23 ~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~l~el~~~e~D~e~~~~a~~e~~ 102 (364)
T TIGR00020 23 LDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSELLELAVEEDDEETFNELDAELK 102 (364)
T ss_pred CCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 368889999999999999999999999999999999999999999999999999999999998 48999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCCceEEE
Q psy2395 84 LAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEII 163 (570)
Q Consensus 84 ~~~~~~~~~~~~l~~~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 163 (570)
.+.+++++++ ...+|++|+|.++|+|||+||+||+||++||++|++||++||+++||++++++.++++.+|+++|+
T Consensus 103 ~l~~~l~~le----~~~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~evi~~~~~~~~g~ks~~ 178 (364)
T TIGR00020 103 ALEKKLAELE----LRTMLSGEYDANNAYLTIQAGAGGTEAQDWASMLYRMYLRWAERRGFKVEIIDYSEGEEAGIKSVT 178 (364)
T ss_pred HHHHHHHHHH----HHhccCCCCccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEE
Confidence 9999999998 446688999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccchhhhhhhhcCcceeEEeCCCCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccccce
Q psy2395 164 ARIIGLNVYSKLKFESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSA 243 (570)
Q Consensus 164 ~~~~g~~~~~~~~~e~G~hr~~r~~~~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~ 243 (570)
+.|+|++||++|++|+|||||||+|||+++||+||||++|.|+|.+++..++.|+++||+++++|||||||||||||+||
T Consensus 179 ~~i~G~~ay~~lk~E~GvHrv~rvs~~~~~~rrhts~a~V~vlP~~~~~~~~~i~~~d~~~~~~rssG~GGQ~VNkt~sa 258 (364)
T TIGR00020 179 ILIKGPYAYGYLKSEQGVHRLVRISPFDANGRRHTSFASVFVMPEVDDDIDIEIKPEDLRIDTYRASGAGGQHVNKTDSA 258 (364)
T ss_pred EEEeccCHHHHHhhccceEEEEecCCCCCCCCeEeeeEEEEEecCCCcccceecccccEEEEEeeCCCCCCccccccceE
Confidence 99999999999999999999999999999999999999999999996544589999999999999999999999999999
Q ss_pred EEEEecCCceEEEEeccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh---hhHhhh
Q psy2395 244 VRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI---LLKYVT 320 (570)
Q Consensus 244 v~~~h~p~gi~~~~~~~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~---LL~~~l 320 (570)
|||+|+||||+|.||++|||++||+.|+++|++||++.+.+++.++.+..|+++... +||++||||||++ +-.|..
T Consensus 259 Vri~H~ptgi~v~~q~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~-~rg~~IRtY~~~~~~rVtDhR~ 337 (364)
T TIGR00020 259 VRITHIPTGIVVQCQNDRSQHKNKDSAMKVLKAKLYELEMEKEQAEKDAKEGEKSEI-GWGSQIRSYVLHPYSMVKDLRT 337 (364)
T ss_pred EEEEECCCcEEEEECCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CccCCeEEEECCCCCccccccc
Confidence 999999999999999999999999999999999999999999998888888776655 6999999999944 556555
Q ss_pred ccC
Q psy2395 321 RLS 323 (570)
Q Consensus 321 ~~~ 323 (570)
+++
T Consensus 338 g~~ 340 (364)
T TIGR00020 338 GYE 340 (364)
T ss_pred CCe
Confidence 554
No 5
>PRK06746 peptide chain release factor 2; Provisional
Probab=100.00 E-value=1.1e-83 Score=645.47 Aligned_cols=296 Identities=34% Similarity=0.479 Sum_probs=281.5
Q ss_pred hcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2395 23 LTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEML---NDLEMRNFALDEINLAKKRIFDIELEIKKL 99 (570)
Q Consensus 23 l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~---~D~~~~~~a~~e~~~~~~~~~~~~~~l~~~ 99 (570)
|..|+||+|+++++++.||++.|+++++.|++|.+..+|++++.+|+ +|++|+++|.+|++.+..++++++ ..
T Consensus 1 ~~~~~fw~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~~d~e~~~~a~~e~~~l~~~l~~le----~~ 76 (326)
T PRK06746 1 MMGAGFWDDQQGAQAVINEANALKDMVGKFRQLDETFENLEITHELLKEEYDEDLHEELESEVKGLIQEMNEYE----LQ 76 (326)
T ss_pred CCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 56899999999999999999999999999999999999999999998 489999999999999999999998 67
Q ss_pred cCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCCceEEEEEEeccchhhhhhhhc
Q psy2395 100 ILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFES 179 (570)
Q Consensus 100 ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~e~ 179 (570)
++|++|+|.++|+|||+||+||+||++||++|++||++||+++||++++++..+++.+|+|+|++.|+|++||++|++|+
T Consensus 77 ~l~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~MY~r~a~~~g~~~evi~~~~~~~~g~ksa~l~i~G~~ay~~lk~E~ 156 (326)
T PRK06746 77 LLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEK 156 (326)
T ss_pred hccCCCCccCCeEEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEeCCCCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccccceEEEEecCCceEEEEec
Q psy2395 180 GVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQN 259 (570)
Q Consensus 180 G~hr~~r~~~~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~h~p~gi~~~~~~ 259 (570)
|||||||+|||+++||+||||++|.|+|.+++..++.|+++||+++|+|||||||||||||+|||||+|+||||+|.||+
T Consensus 157 GvHrv~Rvsp~~s~~rrhTsfa~V~v~P~~~~~~~i~i~~~dl~~~~~rssG~GGQ~vNkt~saVrl~h~ptgi~v~~q~ 236 (326)
T PRK06746 157 GVHRLVRISPFDSSGRRHTSFVSCEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQS 236 (326)
T ss_pred ceEEEEecCCCCCCCCeEeeEEEEEEecCcCCccccccChHHeEEEEEeCCCCCCCCccceeeEEEEEEeCCeEEEEECC
Confidence 99999999999999999999999999999965455999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh---hhHhhhccC
Q psy2395 260 DRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI---LLKYVTRLS 323 (570)
Q Consensus 260 ~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~---LL~~~l~~~ 323 (570)
+|||++||+.|+++|++||++.+.+++.++.+..|+++++. .||++||||||++ +-.|.++.+
T Consensus 237 ~RSQ~~Nk~~A~~~L~akL~~~~~~~~~~~~~~~r~~~~~~-~rg~~IRtYnf~p~~rVtDhR~~~~ 302 (326)
T PRK06746 237 ERSQIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEI-GWGSQIRSYVFHPYSLVKDHRTNTE 302 (326)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-ccCCCeEEEECCCCceeeeeecCce
Confidence 99999999999999999999999999999999999999876 5999999999933 455555544
No 6
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=100.00 E-value=3.6e-83 Score=657.01 Aligned_cols=311 Identities=37% Similarity=0.536 Sum_probs=293.4
Q ss_pred HHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHH
Q psy2395 8 KLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEML---NDLEMRNFALDEINL 84 (570)
Q Consensus 8 ~l~~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~---~D~~~~~~a~~e~~~ 84 (570)
+++.+.+|+.+|++.|++|++|+|++++++++++++.|+++++.|++|++..++++++.+|+ +|+||+++|++|+..
T Consensus 24 ~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~~l~~~~~e~~~~~ell~~e~D~el~~~a~~e~~~ 103 (367)
T PRK00578 24 DVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTLEELRQRLDDLEELLELAEEEDDEETLAEAEAELKA 103 (367)
T ss_pred CHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999998 489999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCCceEEEE
Q psy2395 85 AKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIA 164 (570)
Q Consensus 85 ~~~~~~~~~~~l~~~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 164 (570)
+..+++.++ ..+++++|+|.++|+|||+||+||+||++||++|++||.+||+.+||++++++.++++.+|+++|++
T Consensus 104 l~~~l~~le----~~~ll~~~~D~~~~~leI~aG~GG~Ea~lfa~~L~~mY~~~a~~~g~~~evi~~~~~~~gg~ks~~~ 179 (367)
T PRK00578 104 LEKKLAALE----LERLLSGEYDANNAILTIHAGAGGTEAQDWASMLLRMYLRWAERHGFKVEVLDYSEGEEAGIKSATF 179 (367)
T ss_pred HHHHHHHHH----HHHhcCCCcccCCeEEEEecCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCCeeEEEE
Confidence 999999998 3355689999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccchhhhhhhhcCcceeEEeCCCCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccccceE
Q psy2395 165 RIIGLNVYSKLKFESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAV 244 (570)
Q Consensus 165 ~~~g~~~~~~~~~e~G~hr~~r~~~~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v 244 (570)
.|+|++||++|++|+|||||||+|||+++||+||||++|+|+|.+++..++.|+++||+++++|||||||||||||+|||
T Consensus 180 ~i~G~~a~~~lk~E~GvHrvqrvs~~~~~~r~hts~~~V~vlP~~~~~~~~~i~~~dl~~~~~rssGpGGQ~vNkt~saV 259 (367)
T PRK00578 180 KIKGPYAYGYLKSETGVHRLVRISPFDSAGRRHTSFASVEVYPEVDDTIEIEINPKDLRIDTYRSSGAGGQHVNKTDSAV 259 (367)
T ss_pred EEeccCHHHHHhhccceEEEEecCCCCCCCceecceeeEEecCCCCCccccccChhhEEEEEeeCCCCCCCcccceeeEE
Confidence 99999999999999999999999999999999999999999999976555899999999999999999999999999999
Q ss_pred EEEecCCceEEEEeccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh---hhHhhhc
Q psy2395 245 RITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI---LLKYVTR 321 (570)
Q Consensus 245 ~~~h~p~gi~~~~~~~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~---LL~~~l~ 321 (570)
||+|+||||+|.||++|||++||+.|+++|+++|++.+.+++.++.+..|+.+ ...+||++||||||++ +-.|..|
T Consensus 260 rl~h~ptgi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~-~~~~rg~~IRtYn~~p~~rVtDhR~g 338 (367)
T PRK00578 260 RITHIPTGIVVQCQNERSQHQNKASAMKMLKAKLYELELEKRAAEKDALKGEK-KEIGWGSQIRSYVLHPYQMVKDLRTG 338 (367)
T ss_pred EEEECCCcEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccccccCCeEEEECCCCceeeeeccC
Confidence 99999999999999999999999999999999999999999999999988776 4567999999999933 4555555
Q ss_pred cC
Q psy2395 322 LS 323 (570)
Q Consensus 322 ~~ 323 (570)
++
T Consensus 339 ~~ 340 (367)
T PRK00578 339 YE 340 (367)
T ss_pred ce
Confidence 44
No 7
>PRK05589 peptide chain release factor 2; Provisional
Probab=100.00 E-value=9.4e-83 Score=640.88 Aligned_cols=295 Identities=36% Similarity=0.543 Sum_probs=277.5
Q ss_pred hcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh--CChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2395 23 LTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEML--NDLEMRNFALDEINLAKKRIFDIELEIKKLI 100 (570)
Q Consensus 23 l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~--~D~~~~~~a~~e~~~~~~~~~~~~~~l~~~l 100 (570)
+++|+||+|+++++++++|++.|+++++.|++|....+|++++.+|+ +|++|+++|.+|+..+++++++++ ..+
T Consensus 1 ~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~~l~~~~d~e~~~~a~~e~~~l~~~l~~~e----~~~ 76 (325)
T PRK05589 1 MQEPNFWNDIKEAQEITSEEKYLKDKLDKYNHLRNRIEDIEVLCEMMSEEDDEMKKEIISEVKNIKEEIDRFK----IET 76 (325)
T ss_pred CCCchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH----HHh
Confidence 57999999999999999999999999999999999999999999999 478899999999999999999988 788
Q ss_pred CCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCCceEEEEEEeccchhhhhhhhcC
Q psy2395 101 LPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESG 180 (570)
Q Consensus 101 l~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~e~G 180 (570)
+|++|+|.++|+|||+||+||+||++||++|++||.+||+++||++++++.++++.+|+|+|++.|+|++||++|++|+|
T Consensus 77 l~~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~mY~~~a~~~g~~~~vi~~~~~~~~g~ks~~~~i~G~~ay~~lk~E~G 156 (325)
T PRK05589 77 LLSGEYDRNNAILTLHSGVGGTDAQDWTEMLLRMYTRWAEKKGYKVEIIDLLEGDEAGIKSVTLKITGEFAYGYLKAEKG 156 (325)
T ss_pred cCCCCCcCCCeEEEEECCCCchHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEeCCCCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccccceEEEEecCCceEEEEecc
Q psy2395 181 VHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQND 260 (570)
Q Consensus 181 ~hr~~r~~~~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~h~p~gi~~~~~~~ 260 (570)
||||||+|||+++||+||||++|.|+|.+++..++.|+++||+++|+|||||||||||||+|||||+|+||||+|.||++
T Consensus 157 vHrv~r~s~~~~~~rr~ts~a~V~VlP~~~~~~~~~i~~~dl~~~~~rssG~GGQ~VNkt~saVrl~H~ptgi~v~~q~e 236 (325)
T PRK05589 157 IHRLVRISPFNANGKRQTSFASVEVLPELTDDQDIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNE 236 (325)
T ss_pred eEEEEEcCCCCCCCCeEeeeEEEEEecCcCccccccCCchheEEEEeeCCCCCCCcccceeeEEEEEECCCCEEEEECCc
Confidence 99999999999999999999999999999765459999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh---hhHhhhcc
Q psy2395 261 RSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI---LLKYVTRL 322 (570)
Q Consensus 261 rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~---LL~~~l~~ 322 (570)
|||++||+.|+++|++||++.+.++.+++.+..|+.+ ....||++||||||++ +-.+..+.
T Consensus 237 RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~-~~~~~g~~IRtY~~~p~~rVtDhR~g~ 300 (325)
T PRK05589 237 RSQHSNKETAMKMLKSKLVELKERAHKEKIEDLTGEL-KDMGWGSQIRSYVFHPYNLVKDHRTGV 300 (325)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccccccCCceeeECCCCceeeeeccCc
Confidence 9999999999999999999999999888888888654 3456999999999933 44444444
No 8
>PRK07342 peptide chain release factor 2; Provisional
Probab=100.00 E-value=1e-81 Score=634.47 Aligned_cols=297 Identities=35% Similarity=0.463 Sum_probs=275.4
Q ss_pred HhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2395 22 LLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEML---NDLEMRNFALDEINLAKKRIFDIELEIKK 98 (570)
Q Consensus 22 ~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~---~D~~~~~~a~~e~~~~~~~~~~~~~~l~~ 98 (570)
++++|+||+|+++++++.++++.|+++++.|++|....++++++.+|+ +|++|+++|.+|+..+.++++.++ +
T Consensus 2 ~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~l~el~~~e~D~el~~~a~~e~~~l~~~l~~~e----l 77 (339)
T PRK07342 2 KAEDPSLWNDAQEAQKLMRERQQLDDSINGINHLEQTLNDNIELIAMGEEEGDKSIVEDAEKTIRDLKDEIDRRQ----I 77 (339)
T ss_pred cccCcchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 468999999999999999999999999999999999999999999998 489999999999999999999866 4
Q ss_pred hcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCCceEEEEEEeccchhhhhhhh
Q psy2395 99 LILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFE 178 (570)
Q Consensus 99 ~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~e 178 (570)
..++.+|+|.++|+|||+||+||+||++||++|++||++||+++||++++++.++++.+|+|+|++.|+|++||++|++|
T Consensus 78 ~~lL~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ksa~l~i~G~~ay~~lk~E 157 (339)
T PRK07342 78 DALLSGEADANDTYLEVHAGAGGTESQDWASMLLRMYTRWAERQGRKVEVLEVHDGEEAGIKSATILVKGHNAYGWLKTE 157 (339)
T ss_pred HHHhCCccccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhc
Confidence 45556999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceeEEeCCCCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccccceEEEEecCCceEEEEe
Q psy2395 179 SGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQ 258 (570)
Q Consensus 179 ~G~hr~~r~~~~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~h~p~gi~~~~~ 258 (570)
+|||||||+|||+++||+||||++|.|+|.+++..++.|+++||+++++|||||||||||||+|||||+|+||||+|.||
T Consensus 158 ~GvHrv~rvsp~~~~~rrhTs~a~V~VlP~~~~~~~~~i~~~dl~~~~~RssG~GGQ~VNkt~saVrl~H~ptgi~v~~~ 237 (339)
T PRK07342 158 SGVHRLVRISPYDSNARRHTSFASIWVYPVIDDNIEVDVNESDVRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQCQ 237 (339)
T ss_pred cceeEEEecCCCCCCCCeEeEEEEEEEEcCCCcccccccCcccEEEEEEECCCCCCCCccceeeeEEEEEcCCcEEEEEC
Confidence 99999999999999999999999999999997654589999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchh-hh--hhHhhhccC
Q psy2395 259 NDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFET-NI--LLKYVTRLS 323 (570)
Q Consensus 259 ~~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~-~~--LL~~~l~~~ 323 (570)
++|||++||+.|+++|+++|++.+.+++..+.+..+...... .||++|||||| |. +-.+..+.+
T Consensus 238 ~eRSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~i-~~g~~IRtY~~~p~~rVtDhRtg~~ 304 (339)
T PRK07342 238 QERSQHKNRAKAWSMLRARLYEEELKKREEATNAAAASKTDI-GWGHQIRSYVLQPYQLVKDLRTGVE 304 (339)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-cccCCcCCccCCCCceeeeeccCce
Confidence 999999999999999999999999999888888766544433 49999999999 42 445545443
No 9
>PRK08787 peptide chain release factor 2; Provisional
Probab=100.00 E-value=1.9e-77 Score=595.37 Aligned_cols=265 Identities=35% Similarity=0.501 Sum_probs=251.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCccceEEEEEcCCCc
Q psy2395 45 LYPIVELYNNYKKINEDIITAKEML---NDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGG 121 (570)
Q Consensus 45 L~~~v~~~~~~~~~~~d~~~~~~l~---~D~~~~~~a~~e~~~~~~~~~~~~~~l~~~ll~~~~~d~~~~~lei~~g~Gg 121 (570)
|+..++.|+++....+|+.++.+|+ +|++|++++.+|+..+..++++++ ...++++|+|.++|+|||+||+||
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~l~el~~~~~d~e~~~~~~~e~~~l~~~~~~le----~~~lL~~~~D~~~a~leI~aG~GG 77 (313)
T PRK08787 2 LEKTVIGIADVLSGLADAGELLDLAESEQDEDTALAVIADLDKYQAHVEKLE----FQRMFSGQMDGANAFVDIQAGAGG 77 (313)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHhCCccccCCcEEEEECCCCc
Confidence 6789999999999999999999998 489999999999999999999998 456668999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCCceEEEEEEeccchhhhhhhhcCcceeEEeCCCCCCCcccccce
Q psy2395 122 DESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRVQRVPKTETQGRIHTSAC 201 (570)
Q Consensus 122 ~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~e~G~hr~~r~~~~~~~~~~~ts~~ 201 (570)
+||++||++|++||.+||+++||++++++..+++.+|+|+|++.|+|++||++|++|+|||||||+|||+++||+||||+
T Consensus 78 ~Ea~~~a~~LlrMY~r~A~~~g~~~evi~~~~g~~~Giksa~l~I~G~~ayg~lk~E~GvHRv~R~sp~~s~~rrhTsfa 157 (313)
T PRK08787 78 TEAQDWAEILLRMYLRWAESRGWKTELMEVSGGEVAGIKSATVRIEGEYAYGWLKTEIGVHRLVRKSPFDSDNRRHTSFT 157 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCceeeEEEEEEecccHHHHHhhccCeeEEEecCCCCCCCCEEeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccccceEEEEecCCceEEEEeccccHHHHHHHHHHHHHHHHHHH
Q psy2395 202 TVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDS 281 (570)
Q Consensus 202 ~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~h~p~gi~~~~~~~rsq~~n~~~a~~~l~~~l~~~ 281 (570)
+|.|+|.+++..++.|+++||+++|+|||||||||||||+|||||+|+||||+|.||++|||++||+.|+++|+++|++.
T Consensus 158 sV~V~P~~~~~~~i~i~~~dl~~~~~RssG~GGQ~VNkt~saVri~H~Ptgi~v~~q~eRSQ~~Nk~~A~~~L~~~L~~~ 237 (313)
T PRK08787 158 SVFVSPEVDDNIEIDINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQHQNRDNAMKMLAAKLYEL 237 (313)
T ss_pred EEEEecCcCcccccccChhHeEEEEEECCCCCCCCcCCEeeEEEEEECCCcEEEEECCcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999765559999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHhhhcccccCCCCccchhhh
Q psy2395 282 KLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI 314 (570)
Q Consensus 282 ~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~ 314 (570)
+.+++.++.+..|...... .||++||||||++
T Consensus 238 ~~e~~~~~~~~~~~~k~~i-~~g~qIRtY~f~~ 269 (313)
T PRK08787 238 EVQKRNAEKDALEATKSDI-GWGSQIRNYVLDQ 269 (313)
T ss_pred HHHHHHHHHHHHhhhhhhC-cccccccceeCCC
Confidence 9999998888877544433 4999999999976
No 10
>KOG2726|consensus
Probab=100.00 E-value=6.8e-75 Score=583.57 Aligned_cols=294 Identities=39% Similarity=0.629 Sum_probs=266.9
Q ss_pred HHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHHHHHHHHHH
Q psy2395 18 ELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEML---NDLEMRNFALDEINLAKKRIFDIEL 94 (570)
Q Consensus 18 ~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~---~D~~~~~~a~~e~~~~~~~~~~~~~ 94 (570)
..+..+.+-++|+|+. +|..++..+.+..++.+++..++.|. +|++|+++|.+|+..+..++....+
T Consensus 52 ~~~~~~~~~~~~~~~~----------~l~~~~~~l~~~~~~~~~~~~lk~l~~~~e~e~~~~~a~~E~~~~~~~i~~~~~ 121 (386)
T KOG2726|consen 52 VQEAASNDSDLWDDPA----------ELDEVLNALSDRMKLVRELKSLKSLIKEGEDEDMDELAEEEAEEISKEIERSLH 121 (386)
T ss_pred hHHHhhchhhhhhhhH----------HHHHHHHHHHHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888998875 24444555555555555554444444 6899999999999999999999999
Q ss_pred HHHHhcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCCceEEEEEEeccchhhh
Q psy2395 95 EIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSK 174 (570)
Q Consensus 95 ~l~~~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~ 174 (570)
+|+.+++|++++|..+|+|||+||+||+||++|+.+|++||.+||+.+||++++++..+++.+|+++|++.|+|.+||++
T Consensus 122 ~l~~~lLp~~~~D~~~~iiev~aGaGG~Ea~ift~el~~MY~~~a~~~~w~~~~l~~~~~~~~Gi~~At~~i~G~~ayg~ 201 (386)
T KOG2726|consen 122 ELELSLLPSDPYDAEACIIEVRAGAGGQEAQIFTMELVDMYQKYAERLGWKARVLEKAPGESGGIKSATLEIEGESAYGY 201 (386)
T ss_pred HHHHHhcCCCcccccCeEEEEeCCCCcHHHHHHHHHHHHHHHHHHHhcccceeehhcCCcccccceeeeeEecccchhhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCcceeEEeCCCCCCCcccccceeEEEecCC--CcccccccCCCCeEEEEeeccCCCCcccccccceEEEEecCCc
Q psy2395 175 LKFESGVHRVQRVPKTETQGRIHTSACTVAVIPEA--DEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTG 252 (570)
Q Consensus 175 ~~~e~G~hr~~r~~~~~~~~~~~ts~~~v~~~p~~--~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~h~p~g 252 (570)
|++|.|||||||+|+|++.||+|||+++|.|+|++ ++.. +.|+++||+++++|||||||||||||+|||||+|+|||
T Consensus 202 l~~E~GvHRv~r~p~~e~~gr~htstasV~ViP~~~~~~~~-~~~~~~dl~i~~~R~~G~GGQhvNktdsaVrl~HiPTG 280 (386)
T KOG2726|consen 202 LKFEAGVHRVQRVPSTETSGRRHTSTASVAVIPQPGRDEVD-VEIDEKDLRIETFRASGPGGQHVNKTDSAVRLTHIPTG 280 (386)
T ss_pred eeccCcccceeecCCcccccccccccceEEEeccCCCCccc-eecCchheeEEecccCCCCcccccccccceEEEeecCc
Confidence 99999999999999999999999999999999999 5554 89999999999999999999999999999999999999
Q ss_pred eEEEEeccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh--hhHhhhcc
Q psy2395 253 IVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI--LLKYVTRL 322 (570)
Q Consensus 253 i~~~~~~~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~--LL~~~l~~ 322 (570)
|+|+||++|||++||+.|+.+|++||+..+..+...+....|+.++++..|+++||||||++ +..+..+.
T Consensus 281 Ivv~cq~eRSq~~Nr~~A~~~L~akL~~~~~~~~~~~~~~~r~~qv~s~~rsekiRTy~~~q~rv~D~r~~~ 352 (386)
T KOG2726|consen 281 IVVECQEERSQHKNRALALKRLRAKLAVIYREEKSEEEKKKRKAQVGSLKRSEKIRTYNFKQDRVTDHRIGL 352 (386)
T ss_pred eEEEeecHHhHHhhHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHhhcccCchhceeecccCccchhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999965 45544443
No 11
>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.4e-65 Score=483.63 Aligned_cols=203 Identities=45% Similarity=0.649 Sum_probs=196.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCCceEEEEEEeccchhhhhhhhcCcceeEEeCCC
Q psy2395 111 IFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRVQRVPKT 190 (570)
Q Consensus 111 ~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~e~G~hr~~r~~~~ 190 (570)
|+|+|+||+||+|||+||.||++||++||+++||++|+++..+|+.+|+||++|.|+|++||++|+.|.||||++|+|||
T Consensus 1 ~~l~i~~g~gg~e~~dw~~~l~rmy~r~a~~~g~~~e~l~~~~g~~~g~ks~~~~~~g~~a~g~~~~e~g~hrlvr~Spf 80 (239)
T COG1186 1 AYLTIHAGAGGTEAQDWASMLLRMYTRWAERKGFKVEVLDTSDGEEAGIKSATLKIKGENAYGYLKTETGVHRLVRISPF 80 (239)
T ss_pred CEEEEeCCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeccCCcccccceEEEEEechHHHHHHHhhcceeEEEeecCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccccceEEEEecCCceEEEEeccccHHHHHHHH
Q psy2395 191 ETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHKNKAFA 270 (570)
Q Consensus 191 ~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~h~p~gi~~~~~~~rsq~~n~~~a 270 (570)
++.+|+||||++|.++|.+++..++.|+++||+++|+|||||||||||||+|||||||+||||+|.||.+|||++|++.|
T Consensus 81 ~~~~~R~tsf~~v~v~p~~~~~i~i~I~~~dl~idt~RASGaGGQhVNKt~SAVrlth~ptgivv~cq~eRSq~~n~~~a 160 (239)
T COG1186 81 DSNGRRHTSFASVEVFPELDISIEIEIPDDDLRIDTYRASGAGGQHVNKTDSAVRLTHLPTGIVVLCQNERSQHLNKALA 160 (239)
T ss_pred CcCcccccceeeeeecCCCCcccceecCccceEEEEEEcCCCCCCccccccccEEEEEcCCCCEecCHHHHHHHHHHHHH
Confidence 99999999999999999998666799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh
Q psy2395 271 LKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI 314 (570)
Q Consensus 271 ~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~ 314 (570)
+..|+.+|+..+.+++.++....+..+... .|++++|+|.+++
T Consensus 161 ~~~l~~kL~~~~~~~Rsqe~n~~~a~~k~i-~wg~qirsyv~~p 203 (239)
T COG1186 161 RKMLKGKLYILAQEKRSQEKNRERALKKLI-GWGNQIRSYVLDP 203 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHhccccCCCc
Confidence 999999999999999999999888877665 5999999999874
No 12
>TIGR03072 release_prfH putative peptide chain release factor H. Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon.
Probab=100.00 E-value=3.3e-62 Score=460.78 Aligned_cols=198 Identities=25% Similarity=0.368 Sum_probs=185.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCC-CCceEEEEEEeccchhhhhhhhcCcceeEEeCC
Q psy2395 111 IFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEI-GGYKEIIARIIGLNVYSKLKFESGVHRVQRVPK 189 (570)
Q Consensus 111 ~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~~~~e~G~hr~~r~~~ 189 (570)
++|||+||+||+||++||++||+||.+||+.+||++++++.++++. +|+++|++.|+|++||++|+.|.|+|+|+|.||
T Consensus 1 ~~leI~aG~GG~Ea~lfa~~L~~my~~~a~~~g~~~eii~~~~~~~~gg~ksa~~~i~G~~ay~~l~~~~G~h~~v~~sp 80 (200)
T TIGR03072 1 ILLQLSSAQGPAECCLAVAKALERLTREAAARGVRVEVLEQEPGEVPGTLRSALVSLDGEAAAALADRWEGTLLWICPSP 80 (200)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEEEccCHHHHhhcccceEEEEEcCC
Confidence 4899999999999999999999999999999999999999999987 569999999999999999999999999999999
Q ss_pred CCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccccceEEEEecCCceEEEEeccccHHHHHHH
Q psy2395 190 TETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHKNKAF 269 (570)
Q Consensus 190 ~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~h~p~gi~~~~~~~rsq~~n~~~ 269 (570)
+++.+++||||++|.|+|.. +.|+++||+++|+|||||||||||||+|||||+|+||||+|+||++|||++||+.
T Consensus 81 ~r~~~~R~ts~~~V~v~~~~-----~~i~~~dl~~~~~RssGpGGQ~vNkt~saVrl~h~ptgi~v~~~~~RSQ~~Nk~~ 155 (200)
T TIGR03072 81 YRPHHRRKNWFIGVQRFSAS-----EEATEDEIRFETLRSSGPGGQHVNKTESAVRATHLASGISVKVQSERSQHANKRL 155 (200)
T ss_pred CCCCCCeeEEEEEEEEecCc-----cccChhheEEEEEECCCCCcccccccceeEEEEECCCcEEEEECCccCHHHHHHH
Confidence 99999999999999999842 6799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh
Q psy2395 270 ALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI 314 (570)
Q Consensus 270 a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~ 314 (570)
|+++|+++|++.+.++.+ +....|+.++...+||++||||+++.
T Consensus 156 A~~~L~~~l~~~~~~~~~-~~~~~~r~~~~~~~Rg~~iRty~~~~ 199 (200)
T TIGR03072 156 ATLLLAVRLADLQQEQAA-ALRAERRTAHHQIERGNPVRVFKGEL 199 (200)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhccccccccCceEeeeCCc
Confidence 999999999999888765 44555555666778999999999863
No 13
>PRK08179 prfH peptide chain release factor-like protein; Reviewed
Probab=100.00 E-value=1.3e-61 Score=456.64 Aligned_cols=196 Identities=22% Similarity=0.345 Sum_probs=183.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCC-CCceEEEEEEeccchhhhhhhhcCcceeEEeCC
Q psy2395 111 IFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEI-GGYKEIIARIIGLNVYSKLKFESGVHRVQRVPK 189 (570)
Q Consensus 111 ~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~~~~e~G~hr~~r~~~ 189 (570)
++|||+||+||+||++||++|++||.+||+.+||++++++.++++. +|+|+|++.|+|++||++|+.|.|+|||++.||
T Consensus 2 ~~leI~aG~Gg~Ea~~fa~~L~~my~~~a~~~g~~~~ii~~~~~~~~gg~ksa~~~i~G~~a~~~l~~~~G~~~~V~~sp 81 (200)
T PRK08179 2 ILLQLSSAQGPAECCLAVAKALERLLKEAARQGVRVTVLETETGRYPDTLRSALVSLDGDNAEALAESWCGTIQWICPSP 81 (200)
T ss_pred EEEEEeCCCChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEEEccCHHHHhhcccCeeEEEecCC
Confidence 7999999999999999999999999999999999999999999998 569999999999999999999999999999999
Q ss_pred CCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccccceEEEEecCCceEEEEeccccHHHHHHH
Q psy2395 190 TETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHKNKAF 269 (570)
Q Consensus 190 ~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~h~p~gi~~~~~~~rsq~~n~~~ 269 (570)
+++.+++||||++|.|+|.. +.|+++||+++|+|||||||||||||+|||||+|+||||+|.||++|||++||+.
T Consensus 82 ~~~~~~R~~s~~~V~v~~~~-----~~i~~~dl~~~~~RssGpGGQ~VNkt~saVrl~h~ptgi~v~~~~~RSQ~~Nk~~ 156 (200)
T PRK08179 82 YRPHHGRKNWFVGIGRFSAD-----EEEQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRL 156 (200)
T ss_pred CCCCCCceEEEEEEEEeCCc-----CccCHHHeEEEEEEccCCcccccccccceEEEEEcCCcEEEEECCCCCHHHHHHH
Confidence 99999999999999999764 6899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchh
Q psy2395 270 ALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFET 312 (570)
Q Consensus 270 a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~ 312 (570)
|+++|+++|++.+.++...+ ...++.++...+||++||||..
T Consensus 157 A~~~L~~~L~~~~~~~~~~~-~~~~~~~~~~~~Rg~~IRt~~~ 198 (200)
T PRK08179 157 ARLLIAWKLEQQQQEQSAAL-KSQRRMFHHQIERGNPRRVFTG 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhccccccccCceEeeec
Confidence 99999999999988777655 4455555667789999999963
No 14
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=100.00 E-value=4.3e-42 Score=358.21 Aligned_cols=254 Identities=41% Similarity=0.717 Sum_probs=232.8
Q ss_pred chhhhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHH
Q psy2395 310 FETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDL 389 (570)
Q Consensus 310 y~~~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~ 389 (570)
.+..+++++++++++.+++.+.+.+++.++.+++.+++.||..|+|+|||+|.++|++.+|.++|++|+|||+|+.+++.
T Consensus 165 ~dA~~LL~~~l~~~r~~l~~~~~~~l~~~~~~~~~~~v~RR~~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeTE~LVe~ 244 (423)
T PRK14966 165 NEARMLLQYASEYTRVQLLTRGGEEMPDEVRQRADRLAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPETEHLVEA 244 (423)
T ss_pred HHHHHHHHHHHCcCHHHHhhCCcccCCHHHHHHHHHHHHHHHcCCCceeEeeeeeecCcEEEeCCCccCCCccHHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCC
Q psy2395 390 IVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKK 469 (570)
Q Consensus 390 ~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 469 (570)
++.... ++.+|||+|||||++++.+++..+ +.+|+|+|+|+.|++.|++|+..+ +.+++++++|+++......+
T Consensus 245 aL~~l~-~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~----g~rV~fi~gDl~e~~l~~~~ 318 (423)
T PRK14966 245 VLARLP-ENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADL----GARVEFAHGSWFDTDMPSEG 318 (423)
T ss_pred hhhccC-CCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHc----CCcEEEEEcchhccccccCC
Confidence 987543 456999999999999999998765 689999999999999999999863 45799999999764321235
Q ss_pred ceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCC
Q psy2395 470 LFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGF 549 (570)
Q Consensus 470 ~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf 549 (570)
+||+|+|||||++..+.....++++|||+.||+++.+|+++++.+++.+.++|+|||+++++++..|.+.+.+++.+.||
T Consensus 319 ~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf 398 (423)
T PRK14966 319 KWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGF 398 (423)
T ss_pred CccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCC
Confidence 79999999999988776667777889999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEecCCCCceEEEEEe
Q psy2395 550 SDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 550 ~~i~~~~D~~g~~R~~~~~~ 569 (570)
..+++++|++|++|++++++
T Consensus 399 ~~v~v~kDl~G~dR~v~~~~ 418 (423)
T PRK14966 399 SGVETLPDLAGLDRVTLGKY 418 (423)
T ss_pred cEEEEEEcCCCCcEEEEEEE
Confidence 99999999999999999986
No 15
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=100.00 E-value=8.5e-41 Score=340.87 Aligned_cols=255 Identities=38% Similarity=0.587 Sum_probs=231.0
Q ss_pred chhhhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHH
Q psy2395 310 FETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDL 389 (570)
Q Consensus 310 y~~~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~ 389 (570)
....+|+++++++++..++.+...+++.++.+++..++.+|..|+|++||+|.++|+++.|.+++++|+|||+|+.+++.
T Consensus 25 ~~a~~ll~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~pl~yi~g~~~f~g~~f~v~~~vliPr~ete~lv~~ 104 (284)
T TIGR00536 25 LEALLLLLHDLGRERDLLLAFLTEELTPDEKERIFRLVLRRVKGVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEK 104 (284)
T ss_pred HHHHHHHHHHHCcCHHHHhhccCCCCCHHHHHHHHHHHHHHHcCCCHHHHhCcceEcCeEEEECCCCcCCCCccHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC-CCC-CEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC
Q psy2395 390 IVKKTF-EKK-IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY 467 (570)
Q Consensus 390 ~~~~~~-~~~-~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~ 467 (570)
++.... ..+ .+|||+|||||++++.++...+ +.+|+|+|+|+.+++.|++|+..++ ...++.|+++|+++.++.
T Consensus 105 ~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~--~~~~v~~~~~d~~~~~~~- 180 (284)
T TIGR00536 105 ALASLISQNPILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQ--LEHRVEFIQSNLFEPLAG- 180 (284)
T ss_pred HHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhccCcC-
Confidence 876542 222 6999999999999999998875 5799999999999999999998753 233599999999875532
Q ss_pred CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHH-H
Q psy2395 468 KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLF-K 546 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~-~ 546 (570)
.+||+|++||||++..+....+.+..|||+.||++|.+|+++++.++..+.++|+|||++++++++.+.+.+.+++. .
T Consensus 181 -~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~ 259 (284)
T TIGR00536 181 -QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIK 259 (284)
T ss_pred -CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhc
Confidence 48999999999999887666667778999999999999999999999999999999999999999999999999998 4
Q ss_pred CCCeeEEEEecCCCCceEEEEEe
Q psy2395 547 YGFSDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 547 ~Gf~~i~~~~D~~g~~R~~~~~~ 569 (570)
.||..+.+++|++|++|++++++
T Consensus 260 ~~~~~~~~~~D~~g~~R~~~~~~ 282 (284)
T TIGR00536 260 FTWYDVENGRDLNGKERVVLGFY 282 (284)
T ss_pred CCCceeEEecCCCCCceEEEEEe
Confidence 78999999999999999999986
No 16
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-40 Score=335.23 Aligned_cols=252 Identities=37% Similarity=0.611 Sum_probs=228.6
Q ss_pred hhhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHHHH
Q psy2395 312 TNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIV 391 (570)
Q Consensus 312 ~~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~ 391 (570)
...++...++.++..+..+....++.++..++.+++.+|..+.|++||+|.++|+++.|.+++++++|||+|+.+++.++
T Consensus 25 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~P~~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l 104 (280)
T COG2890 25 AELLLLHLLGKPRDQLLAHPEAELSEEELERLRELLERRAEGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAAL 104 (280)
T ss_pred HHHHHHHHhCCCHHHHhhccccccCHHHHHHHHHHHHHHHCCCCHhHhhccCeecceeeeeCCCceecCCchHHHHHHHH
Confidence 35677778888999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred hhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCce
Q psy2395 392 KKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLF 471 (570)
Q Consensus 392 ~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f 471 (570)
........+|||+|||||++++.+++.++ .++|+|+|+|+.|++.|++|+..++. .++.++.+|+++.+. ++|
T Consensus 105 ~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l---~~~~~~~~dlf~~~~---~~f 177 (280)
T COG2890 105 ALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGL---VRVLVVQSDLFEPLR---GKF 177 (280)
T ss_pred HhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCC---ccEEEEeeecccccC---Cce
Confidence 33222222799999999999999999986 58999999999999999999998642 567788889988765 489
Q ss_pred eEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCC-Ce
Q psy2395 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYG-FS 550 (570)
Q Consensus 472 D~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~G-f~ 550 (570)
|+||+||||++.......+.++.|||..|++++.+|+++++.++..+.++|+|||+++++++.++.+.+.+++.+.| |.
T Consensus 178 DlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~ 257 (280)
T COG2890 178 DLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFE 257 (280)
T ss_pred eEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCce
Confidence 99999999999886667788889999999999999999999999999999999999999999999999999999999 88
Q ss_pred eEEEEecCCCCceEEEEEeC
Q psy2395 551 DIKSWRDLSGIERVTQGKIS 570 (570)
Q Consensus 551 ~i~~~~D~~g~~R~~~~~~~ 570 (570)
.+.+.+|++|.+|++.+++.
T Consensus 258 ~v~~~~d~~g~~rv~~~~~~ 277 (280)
T COG2890 258 IVETLKDLFGRDRVVLAKLR 277 (280)
T ss_pred EEEEEecCCCceEEEEEEec
Confidence 89999999999999999874
No 17
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=100.00 E-value=1.5e-40 Score=362.44 Aligned_cols=254 Identities=38% Similarity=0.605 Sum_probs=228.6
Q ss_pred chhhhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHH
Q psy2395 310 FETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDL 389 (570)
Q Consensus 310 y~~~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~ 389 (570)
....+|+++++++++..++.+.+.+++.++.+.+.++++||..|+|+|||+|.++|||++|.|+|+||||||+|+.|+++
T Consensus 26 ~~a~~Ll~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~rr~~~ePlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~ 105 (506)
T PRK01544 26 LEARILLQHVINKPIEYLLINLDEQLNEAEIEAFEKLLERRLKHEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDV 105 (506)
T ss_pred HHHHHHHHHHHCcCHHHHhhccCCCCCHHHHHHHHHHHHHHHcCCCHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC-------------------------CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 390 IVKKTF-------------------------EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 390 ~~~~~~-------------------------~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
++.... .++.+|||+|||||++++.++...+ +++|+|+|+|+.+++.|++|+..
T Consensus 106 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~ 184 (506)
T PRK01544 106 VFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIK 184 (506)
T ss_pred HHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHH
Confidence 876431 1246899999999999999998765 58999999999999999999987
Q ss_pred hcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcc-cCCCCccccccccccccCCChHHHHHHHHHHhhccc
Q psy2395 445 KLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIH-LNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV 523 (570)
Q Consensus 445 ~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~-~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk 523 (570)
++ ...++.++++|+++.++ .++||+|++||||++..... ....+..|||..||+++.+|+++|+.+++.+.++|+
T Consensus 185 ~~--l~~~v~~~~~D~~~~~~--~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~ 260 (506)
T PRK01544 185 YE--VTDRIQIIHSNWFENIE--KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLK 260 (506)
T ss_pred cC--CccceeeeecchhhhCc--CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhcc
Confidence 53 23469999999876553 36899999999999887654 344566799999999999999999999999999999
Q ss_pred cCeEEEEEEcCCCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEE
Q psy2395 524 KNGLLLIEHGYNQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGK 568 (570)
Q Consensus 524 pgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~ 568 (570)
|||+++++++..+.+.+.+++.+.||..+.+++|++|++|++++.
T Consensus 261 ~gG~l~lEig~~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~~ 305 (506)
T PRK01544 261 PNGKIILEIGFKQEEAVTQIFLDHGYNIESVYKDLQGHSRVILIS 305 (506)
T ss_pred CCCEEEEEECCchHHHHHHHHHhcCCCceEEEecCCCCceEEEec
Confidence 999999999999999999999999999999999999999999864
No 18
>KOG2904|consensus
Probab=100.00 E-value=4.4e-36 Score=288.78 Aligned_cols=256 Identities=26% Similarity=0.318 Sum_probs=212.4
Q ss_pred chhhhhhHhhhccCcceeeec--hhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHH
Q psy2395 310 FETNILLKYVTRLSDVELIIN--NEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLV 387 (570)
Q Consensus 310 y~~~~LL~~~l~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~ 387 (570)
.+++.+.+++++.. -+.+.. -+.||...+++.++.++.+|.++.|+|||+|.++|.++.+.+.|+||||||+|+.++
T Consensus 56 ~~~~~i~shvL~~K-f~si~ds~~~~pl~~~ql~~i~~~~~~R~~r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V 134 (328)
T KOG2904|consen 56 LSYKWIVSHVLPDK-FWSIEDSIVDDPLVILQLESIRWACLQRYKRMPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWV 134 (328)
T ss_pred hhhHHHHHhhhhhh-hccccchhhccccchhHHHHHHHHHHHHHhcCChhheeccCccCCceEEecCCeeecCccHHHHH
Confidence 45566777776655 222221 256788888999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCC----CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEE----Ecc
Q psy2395 388 DLIVKKTFE----KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFI----KSN 459 (570)
Q Consensus 388 ~~~~~~~~~----~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~----~~D 459 (570)
+++++.... ++..+||+|||||++++.++...+ .++|+|||.|+.|+.+|.+|++++. ...++.++ .+|
T Consensus 135 ~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~--l~g~i~v~~~~me~d 211 (328)
T KOG2904|consen 135 EAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLK--LSGRIEVIHNIMESD 211 (328)
T ss_pred HHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHh--hcCceEEEecccccc
Confidence 999886542 456899999999999999999887 6899999999999999999999874 33456655 667
Q ss_pred cccccccCCCceeEEEECCCCCCCCCccc-CCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc--CCC
Q psy2395 460 WYNNLQNYKKLFNIIVANPPYIPKGDIHL-NKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG--YNQ 536 (570)
Q Consensus 460 ~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~-~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~--~~~ 536 (570)
++...+...+++|+++|||||++.++... .+++..|||.+||+||.+|++++..++.-+.++|+|||.++++.. ...
T Consensus 212 ~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~ 291 (328)
T KOG2904|consen 212 ASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEH 291 (328)
T ss_pred cccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccC
Confidence 76655555689999999999999888664 455567999999999999999999999999999999999999887 445
Q ss_pred HHHHHHHHHH---CCCeeEEEEecCCCCceEEEEEe
Q psy2395 537 SNLVRKLLFK---YGFSDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 537 ~~~l~~ll~~---~Gf~~i~~~~D~~g~~R~~~~~~ 569 (570)
...+..++.. .-+..+.++.|..|.+||++...
T Consensus 292 ~~lv~~~m~s~~~d~~~~~~v~~Df~~~~Rfv~i~r 327 (328)
T KOG2904|consen 292 SYLVRIWMISLKDDSNGKAAVVSDFAGRPRFVIIHR 327 (328)
T ss_pred cHHHHHHHHhchhhccchhheeecccCCcceEEEEe
Confidence 5555555543 23566889999999999999865
No 19
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=100.00 E-value=6.4e-36 Score=304.26 Aligned_cols=237 Identities=29% Similarity=0.370 Sum_probs=210.1
Q ss_pred chhhhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHh-cCCCceeecCcccccCeeeeecCCccccchhHHHHHH
Q psy2395 310 FETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRI-LGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVD 388 (570)
Q Consensus 310 y~~~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~-~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~ 388 (570)
....+|+++++++++..++.+...+++.++.+.+.+++.||. .++|++||+|.++|+++.|.+++++|+|+|+++.++.
T Consensus 31 ~~a~~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~Pl~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~ 110 (284)
T TIGR03533 31 DEAVYLVLHALHLPLDILEPFLDARLTPSEKERILELIERRIEERIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIE 110 (284)
T ss_pred HHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHhCCCcHHHHcCCCeecCcEEEECCCCccCCCchHHHHH
Confidence 367889999999999999999999999999999999999998 6899999999999999999999999999999999888
Q ss_pred HHHhh-c-CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc
Q psy2395 389 LIVKK-T-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN 466 (570)
Q Consensus 389 ~~~~~-~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~ 466 (570)
..+.. . ..++.+|||+|||+|++++.+++..+ +.+|+|+|+|+.+++.|++|+..++ ...++.++++|+++.++
T Consensus 111 ~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~--~~~~i~~~~~D~~~~~~- 186 (284)
T TIGR03533 111 DGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHG--LEDRVTLIQSDLFAALP- 186 (284)
T ss_pred HHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhhccC-
Confidence 87653 3 23457999999999999999998875 5799999999999999999998753 23469999999977553
Q ss_pred CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHH
Q psy2395 467 YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFK 546 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~ 546 (570)
..+||+|++||||++.........++.|||..|++++.+|+++++.++..+.++|+|||+++++++..+ +.+.+++.+
T Consensus 187 -~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~ 264 (284)
T TIGR03533 187 -GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPD 264 (284)
T ss_pred -CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHh
Confidence 358999999999998876655555668999999999999999999999999999999999999999866 689999999
Q ss_pred CCCeeE
Q psy2395 547 YGFSDI 552 (570)
Q Consensus 547 ~Gf~~i 552 (570)
+||...
T Consensus 265 ~~~~~~ 270 (284)
T TIGR03533 265 VPFTWL 270 (284)
T ss_pred CCCcee
Confidence 998754
No 20
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=100.00 E-value=1.5e-35 Score=301.20 Aligned_cols=253 Identities=40% Similarity=0.726 Sum_probs=227.4
Q ss_pred hhhhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHHH
Q psy2395 311 ETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLI 390 (570)
Q Consensus 311 ~~~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~ 390 (570)
....+++++++.++..+..+...+++.++.+++.+++.+|..+.|++|++|..+||+..|.+++++|+|+|+|+.+++.+
T Consensus 21 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~g~~~f~~~~~~~~~~~lipr~~te~l~~~~ 100 (275)
T PRK09328 21 DAELLLAHVLGLSRTDLLLNPEEELTPEELERFRALVARRAAGEPLQYILGEAEFWGLDFKVSPGVLIPRPETEELVEWA 100 (275)
T ss_pred HHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHcCCCHHHHceeceEcCcEEEECCCceeCCCCcHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCC
Q psy2395 391 VKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKK 469 (570)
Q Consensus 391 ~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 469 (570)
..... .++.+|||+|||+|.+++.++...+ ..+|+|+|+|+.+++.|++|+... ...++.++++|+++... .+
T Consensus 101 ~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~---~~~~i~~~~~d~~~~~~--~~ 174 (275)
T PRK09328 101 LEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHG---LGARVEFLQGDWFEPLP--GG 174 (275)
T ss_pred HHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhC---CCCcEEEEEccccCcCC--CC
Confidence 75432 4567999999999999999998875 589999999999999999999721 34579999999976543 36
Q ss_pred ceeEEEECCCCCCCCCcccCCCCc-cccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCC
Q psy2395 470 LFNIIVANPPYIPKGDIHLNKGDL-RFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYG 548 (570)
Q Consensus 470 ~fD~Iv~NPPy~~~~~~~~~~~~~-~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~G 548 (570)
+||+|++||||++..........+ .|+|..+++++.+|++++..+++.+.++|+|||+++++++..+.+.+.+++.+.|
T Consensus 175 ~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~g 254 (275)
T PRK09328 175 RFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAG 254 (275)
T ss_pred ceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCC
Confidence 899999999999877665444444 5999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEecCCCCceEEEEEe
Q psy2395 549 FSDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 549 f~~i~~~~D~~g~~R~~~~~~ 569 (570)
|..+.+++|+.|.+|++++++
T Consensus 255 f~~v~~~~d~~~~~r~~~~~~ 275 (275)
T PRK09328 255 FADVETRKDLAGRDRVVLGRR 275 (275)
T ss_pred CceeEEecCCCCCceEEEEEC
Confidence 999999999999999999875
No 21
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=100.00 E-value=1.4e-35 Score=304.49 Aligned_cols=249 Identities=27% Similarity=0.343 Sum_probs=214.0
Q ss_pred chhhhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHh-cCCCceeecCcccccCeeeeecCCccccchhHHHHHH
Q psy2395 310 FETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRI-LGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVD 388 (570)
Q Consensus 310 y~~~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~-~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~ 388 (570)
+...+|+++++++++..++.+...+++.++.+++.+++.||. .|+|++||+|.++|+++.|.+++++|+|+|+++.++.
T Consensus 43 ~~a~~ll~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~rr~~~~~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~ 122 (307)
T PRK11805 43 DEAVQLVLHALHLPLDIPEPFLDARLTPSEKARILELIERRINERIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIE 122 (307)
T ss_pred HHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHHCCccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHH
Confidence 467889999999999999999999999999999999999998 6999999999999999999999999999999998888
Q ss_pred HHHhh-cCCC-CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc
Q psy2395 389 LIVKK-TFEK-KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN 466 (570)
Q Consensus 389 ~~~~~-~~~~-~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~ 466 (570)
.++.. .... +.+|||+|||+|++++.++...+ +.+|+|+|+|+.+++.|++|+..++ ...+++++++|+++.++
T Consensus 123 ~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~--l~~~i~~~~~D~~~~l~- 198 (307)
T PRK11805 123 DGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHG--LEDRVTLIESDLFAALP- 198 (307)
T ss_pred HHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhC--CCCcEEEEECchhhhCC-
Confidence 77653 2222 36899999999999999998875 5899999999999999999998753 23469999999977554
Q ss_pred CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHH
Q psy2395 467 YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFK 546 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~ 546 (570)
.++||+|++||||++......+..++.|||..|++++.+|+++++.+++.+.++|+|||+++++++..+. .+.+++..
T Consensus 199 -~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~~-~~~~~~~~ 276 (307)
T PRK11805 199 -GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSRV-HLEEAYPD 276 (307)
T ss_pred -CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcCHH-HHHHHHhh
Confidence 3589999999999988766555556679999999999999999999999999999999999999998765 58888988
Q ss_pred CCCeeEEEEecCCCCceEEE
Q psy2395 547 YGFSDIKSWRDLSGIERVTQ 566 (570)
Q Consensus 547 ~Gf~~i~~~~D~~g~~R~~~ 566 (570)
.||....+.. .+...+++
T Consensus 277 ~~~~~~~~~~--~~~~~~~~ 294 (307)
T PRK11805 277 VPFTWLEFEN--GGDGVFLL 294 (307)
T ss_pred CCCEEEEecC--CCceEEEE
Confidence 8887655533 34444443
No 22
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=100.00 E-value=1.4e-32 Score=274.94 Aligned_cols=219 Identities=28% Similarity=0.452 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHHHHhhcCC--CCCEEEEECCcccHHHHHHHH
Q psy2395 340 INILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTFE--KKIKLLEMGTGSGAIAIAIAI 417 (570)
Q Consensus 340 ~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~~--~~~~VLDlGcGtG~i~l~la~ 417 (570)
...+..+++||..++|+|||+|.++|++++|.++|++|+|+++|+.+++.++..... .+.+|||+|||+|.+++.+++
T Consensus 27 ~~~~~~~~~rr~~~~Pl~yi~g~~~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~ 106 (251)
T TIGR03704 27 PGELAAMVDRRVAGLPLEHVLGWAEFCGLRIAVDPGVFVPRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAA 106 (251)
T ss_pred HHHHHHHHHHHHcCCCHHHhcccCeEcCeEEEECCCCcCCCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999998875432 245899999999999999998
Q ss_pred hcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc-CCCceeEEEECCCCCCCCCcccCC-CCccc
Q psy2395 418 YSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN-YKKLFNIIVANPPYIPKGDIHLNK-GDLRF 495 (570)
Q Consensus 418 ~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~-~~~~fD~Iv~NPPy~~~~~~~~~~-~~~~~ 495 (570)
..+ +.+|+|+|+|+.+++.|++|+..+ + ++++++|+++.++. ..++||+|++||||++........ .+..|
T Consensus 107 ~~~-~~~v~~vDis~~al~~A~~N~~~~----~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ 179 (251)
T TIGR03704 107 ALD-GIELHAADIDPAAVRCARRNLADA----G--GTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDH 179 (251)
T ss_pred hCC-CCEEEEEECCHHHHHHHHHHHHHc----C--CEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhC
Confidence 765 579999999999999999999864 2 47899999765432 125799999999999877655433 44469
Q ss_pred cccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCee-EEEEecCCCCceEEEE
Q psy2395 496 EPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSD-IKSWRDLSGIERVTQG 567 (570)
Q Consensus 496 ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~-i~~~~D~~g~~R~~~~ 567 (570)
+|..++++|.+|++.++.++..+.++|+|||+++++++..+...+..++.++||.. +...+|+ ..-+++|
T Consensus 180 ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~~--~~~~~~~ 250 (251)
T TIGR03704 180 EPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEEL--YATVVIG 250 (251)
T ss_pred CCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcccc--cceeeec
Confidence 99999999999999999999999999999999999999999999999999999875 5556676 4445554
No 23
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=100.00 E-value=5.1e-32 Score=271.25 Aligned_cols=248 Identities=40% Similarity=0.672 Sum_probs=221.6
Q ss_pred hhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHHHHh
Q psy2395 313 NILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVK 392 (570)
Q Consensus 313 ~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~ 392 (570)
.+++++++++++..++.+....++.++.+.+..++.++..+.|++|++|..+|++..|.+++++++|+++++.+++.++.
T Consensus 3 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~l~ 82 (251)
T TIGR03534 3 ELLLAHVLGKDRTDLLLHPEKELTPEELARFEALLARRAKGEPVAYILGEREFYGLDFKVSPGVLIPRPDTEELVEAALE 82 (251)
T ss_pred HHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHcCCCHHHHcccceEeceEEEECCCcccCCCChHHHHHHHHH
Confidence 46888899999888888888889999999999999999999999999999999999999999999999999999999887
Q ss_pred hcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCcee
Q psy2395 393 KTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFN 472 (570)
Q Consensus 393 ~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD 472 (570)
.....+.+|||+|||+|.++..++...+ ..+++|+|+|+.+++.|++|+..++. .++.++++|+.+..+ .++||
T Consensus 83 ~~~~~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~d~~~~~~--~~~fD 156 (251)
T TIGR03534 83 RLKKGPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGL---DNVTFLQSDWFEPLP--GGKFD 156 (251)
T ss_pred hcccCCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECchhccCc--CCcee
Confidence 7655567999999999999999998875 57999999999999999999986421 259999999977543 37899
Q ss_pred EEEECCCCCCCCCcccCCCC-ccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCee
Q psy2395 473 IIVANPPYIPKGDIHLNKGD-LRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSD 551 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~-~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~ 551 (570)
+|++||||+........... ..|+|..+++++.+|+..+..+++.+.++|+|||+++++++..+.+.+.+++.++||..
T Consensus 157 ~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~ 236 (251)
T TIGR03534 157 LIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFAD 236 (251)
T ss_pred EEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCc
Confidence 99999999987765544444 45899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCceEEE
Q psy2395 552 IKSWRDLSGIERVTQ 566 (570)
Q Consensus 552 i~~~~D~~g~~R~~~ 566 (570)
+.+++|+.|.+|+++
T Consensus 237 v~~~~d~~~~~r~~~ 251 (251)
T TIGR03534 237 VETRKDLAGKDRVVL 251 (251)
T ss_pred eEEEeCCCCCcCeeC
Confidence 999999999999974
No 24
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors. Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y ....
Probab=99.97 E-value=1.1e-30 Score=229.04 Aligned_cols=109 Identities=43% Similarity=0.714 Sum_probs=103.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEE
Q psy2395 70 NDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEII 149 (570)
Q Consensus 70 ~D~~~~~~a~~e~~~~~~~~~~~~~~l~~~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~ 149 (570)
+|+||++++.+|+..+..+++.++.++...++|++++|.++|+|||+||+||+||++||++|++||++||+++||+++++
T Consensus 7 ~D~e~~~~~~~e~~~~~~~l~~l~~~l~~~ll~~~~~d~~~~ileI~aG~GG~EA~lfa~~L~~MY~~~a~~~gw~~~~l 86 (115)
T PF03462_consen 7 EDEEMRELAEEEIEQLEEELEELEKELLDSLLPSDPYDANNAILEIRAGAGGDEACLFAEELFRMYQRYAERRGWKVEVL 86 (115)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHSSTTTSEEEEEEEE-SSTHHHHHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCCCchHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccCCCCceEEEEEEeccchhhhhhhh
Q psy2395 150 SRSLSEIGGYKEIIARIIGLNVYSKLKFE 178 (570)
Q Consensus 150 ~~~~~~~~g~~~~~~~~~g~~~~~~~~~e 178 (570)
+.++++.+|+|+|++.|+|++||++||+|
T Consensus 87 ~~~~~~~~G~k~a~~~I~G~~aY~~Lk~E 115 (115)
T PF03462_consen 87 DYSPGEEGGIKSATLEISGEGAYGYLKFE 115 (115)
T ss_dssp EEEE-SSSSEEEEEEEEESTTHHHHHGGG
T ss_pred ecCCCCccceeEEEEEEEcCChHHhccCC
Confidence 99999999999999999999999999998
No 25
>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis []. At present two classes of RFs can be distinguished. Class I RFs bind to ribosomes that have encountered a stop codon at their decoding site and induce release of the nascent polypeptide. Class II RFs are GTP-binding proteins that interact with class I RFs and enhance class I RF activity. In prokaryotes there are two class I RFs that act in a codon specific manner []: RF-1 (gene prfA) mediates UAA and UAG-dependent termination while RF-2 (gene prfB) mediates UAA and UGA-dependent termination. RF-1 and RF-2 are structurally and evolutionary related proteins which have been shown to be part of a larger family [].; GO: 0003747 translation release factor activity, 0006415 translational termination; PDB: 2JY9_A 1ZBT_A 1GQE_A 3F1G_X 3F1E_X 1RQ0_C 4DH9_Y 2JVA_A 1J26_A 3D5A_X ....
Probab=99.96 E-value=1.7e-29 Score=220.41 Aligned_cols=100 Identities=38% Similarity=0.658 Sum_probs=93.3
Q ss_pred ccccCCCCeEEEEeeccCCCCcccccccceEEEEecCCceEEEEeccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy2395 214 DININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKM 293 (570)
Q Consensus 214 ~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~h~p~gi~~~~~~~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~ 293 (570)
++.|+++||+++|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.|+++|.++|..+..++........
T Consensus 6 ~~~i~~~dl~~~~~RssGpGGQ~VNk~~s~V~l~h~ptgi~v~~~~~Rsq~~Nr~~A~~~L~~~l~~~~~~~~~~~~~~~ 85 (113)
T PF00472_consen 6 EIDIPEKDLEISFSRSSGPGGQNVNKTNSKVRLRHIPTGIVVKCQESRSQHQNREDALEKLREKLDEAYREKRREKTREI 85 (113)
T ss_dssp SSCC-GGGEEEEEEESSSSSSCHHHSSSEEEEEEETTTTEEEEEESSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred ccccCHHHeEEEEEecCCCCCCcccccCCEEEEEEecccEEEEEcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999877777777788
Q ss_pred HHhhhcccccCCCCccchhh
Q psy2395 294 RRLLIGSVQKKSPLNIFETN 313 (570)
Q Consensus 294 r~~~~~~~~~~~~iR~y~~~ 313 (570)
++++....++++++|+|+++
T Consensus 86 ~~~~~~~~~~~~~iR~y~~~ 105 (113)
T PF00472_consen 86 RKSQVKRLERKKKIRTYNFP 105 (113)
T ss_dssp TTTSCCCSSTTSEEEEEETT
T ss_pred HHHHHhHHhhhcceecccCC
Confidence 88888878899999999984
No 26
>PLN02672 methionine S-methyltransferase
Probab=99.96 E-value=4.2e-28 Score=278.72 Aligned_cols=196 Identities=20% Similarity=0.213 Sum_probs=166.4
Q ss_pred cCcccccCeeeeecCCccccchhHHHHHHHHHhhcCC---CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHH
Q psy2395 360 IGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTFE---KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALK 436 (570)
Q Consensus 360 ~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~~---~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~ 436 (570)
.|.++||++.|.+.|++|+|||+|+.+++. +...+. ++.+|||+|||||++++.+++.++ ..+|+|+|+|+.|++
T Consensus 79 ~G~~~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~ 156 (1082)
T PLN02672 79 EGFRNRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVK 156 (1082)
T ss_pred CCeEEecCCceeeCCCcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHH
Confidence 488999999999999999999999999998 443221 246899999999999999999876 479999999999999
Q ss_pred HHHHHHHhhccc-------------CCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCc-cccc-----
Q psy2395 437 IAKKNAKKKLTK-------------YNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDL-RFEP----- 497 (570)
Q Consensus 437 ~A~~n~~~~~~~-------------~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~-~~ep----- 497 (570)
.|++|+..|+.. ...+++|+++|+++.+.....+||+||+||||++.++...+.+++ .|||
T Consensus 157 ~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~ 236 (1082)
T PLN02672 157 VAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLY 236 (1082)
T ss_pred HHHHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhcccccccc
Confidence 999999976321 113699999999876643223799999999999988876555555 3664
Q ss_pred ----cccccc---cCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHH-HHHHHCCCeeEEEEec
Q psy2395 498 ----INALTD---YSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVR-KLLFKYGFSDIKSWRD 557 (570)
Q Consensus 498 ----~~al~~---~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~-~ll~~~Gf~~i~~~~D 557 (570)
..||++ +.+|+++|++++..+.++|+|||++++++|..|++.+. +++.+.||..+.+|+.
T Consensus 237 ~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 237 SLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred ccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHHHCCCCeeEEeee
Confidence 789987 48999999999999999999999999999999999999 6999999999888864
No 27
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.85 E-value=3.2e-20 Score=175.21 Aligned_cols=140 Identities=29% Similarity=0.512 Sum_probs=114.2
Q ss_pred eeeeecCCccccc---hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 368 LVLNITSDVLIPR---PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 368 ~~~~v~~~~~~pr---~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
++|...|++|.|. +.|+.|++.+... ++.+|||+|||+|.+++.+++.++ ..+|+++|+|+.+++.|++|+..
T Consensus 2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~---~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~ 77 (170)
T PF05175_consen 2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH---KGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAER 77 (170)
T ss_dssp EEEEEETTSTTTTSHHHHHHHHHHHHHHH---TTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHH
T ss_pred EEEEECCCeeCCCCCCHHHHHHHHHHhhc---cCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHh
Confidence 4678899999855 5788888888664 567999999999999999999886 57899999999999999999998
Q ss_pred hcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcccc
Q psy2395 445 KLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVK 524 (570)
Q Consensus 445 ~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkp 524 (570)
|+. . +++++.+|+++..+ ..+||+|++|||+.. +..+|...++++++.+.++|+|
T Consensus 78 n~~--~-~v~~~~~d~~~~~~--~~~fD~Iv~NPP~~~--------------------~~~~~~~~~~~~i~~a~~~Lk~ 132 (170)
T PF05175_consen 78 NGL--E-NVEVVQSDLFEALP--DGKFDLIVSNPPFHA--------------------GGDDGLDLLRDFIEQARRYLKP 132 (170)
T ss_dssp TTC--T-TEEEEESSTTTTCC--TTCEEEEEE---SBT--------------------TSHCHHHHHHHHHHHHHHHEEE
T ss_pred cCc--c-cccccccccccccc--ccceeEEEEccchhc--------------------ccccchhhHHHHHHHHHHhccC
Confidence 632 1 29999999988665 479999999999653 2234677889999999999999
Q ss_pred CeEEEEEEcCCC
Q psy2395 525 NGLLLIEHGYNQ 536 (570)
Q Consensus 525 gG~l~~~~~~~~ 536 (570)
||.++++.....
T Consensus 133 ~G~l~lv~~~~~ 144 (170)
T PF05175_consen 133 GGRLFLVINSHL 144 (170)
T ss_dssp EEEEEEEEETTS
T ss_pred CCEEEEEeecCC
Confidence 999988776544
No 28
>PRK14967 putative methyltransferase; Provisional
Probab=99.84 E-value=9.1e-20 Score=179.72 Aligned_cols=177 Identities=24% Similarity=0.338 Sum_probs=143.1
Q ss_pred ccCeeeeecCCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 365 FYGLVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 365 f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
+-+..+.+.+++|.|..+++.+.+.+......++.+|||+|||+|.+++.+++.. ..+|+|+|+|+.+++.|++|+..
T Consensus 4 ~~~~~~~~~~g~~~p~~ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~--~~~v~~vD~s~~~l~~a~~n~~~ 81 (223)
T PRK14967 4 TPPDALLRAPGVYRPQEDTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAG--AGSVTAVDISRRAVRSARLNALL 81 (223)
T ss_pred CCCceeecCCCCcCCCCcHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHH
Confidence 3467788899999999999999888765444567899999999999999998753 35899999999999999999986
Q ss_pred hcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcccc
Q psy2395 445 KLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVK 524 (570)
Q Consensus 445 ~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkp 524 (570)
+ +.++.++++|+.+.++ .++||+|++||||++..... ...+.|..++.++.+|...+..+++.+.++|+|
T Consensus 82 ~----~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~ 151 (223)
T PRK14967 82 A----GVDVDVRRGDWARAVE--FRPFDVVVSNPPYVPAPPDA----PPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP 151 (223)
T ss_pred h----CCeeEEEECchhhhcc--CCCeeEEEECCCCCCCCccc----ccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC
Confidence 4 4468899999976443 36899999999998764321 123456667777888888899999999999999
Q ss_pred CeEEEEEEcC-CCHHHHHHHHHHCCCeeEE
Q psy2395 525 NGLLLIEHGY-NQSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 525 gG~l~~~~~~-~~~~~l~~ll~~~Gf~~i~ 553 (570)
||.+++..+. .+...+.+.+++.||....
T Consensus 152 gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 152 GGSLLLVQSELSGVERTLTRLSEAGLDAEV 181 (223)
T ss_pred CcEEEEEEecccCHHHHHHHHHHCCCCeEE
Confidence 9999987655 4677888889999986543
No 29
>PRK09256 hypothetical protein; Provisional
Probab=99.83 E-value=7.8e-21 Score=170.16 Aligned_cols=69 Identities=39% Similarity=0.580 Sum_probs=64.6
Q ss_pred cccCCCCeEEEEeeccCCCCcccccccceEEEEe------cC-----------------Cc-eEEEEeccccHHHHHHHH
Q psy2395 215 ININPADLRIDTYRASGAGGQHINKTDSAVRITH------IP-----------------TG-IVVQCQNDRSQHKNKAFA 270 (570)
Q Consensus 215 ~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~h------~p-----------------~g-i~~~~~~~rsq~~n~~~a 270 (570)
+.|+.++|++.|+|||||||||||||+|+|+|+| +| +| |+|.|+++|||++|++.|
T Consensus 8 ~~i~~~~l~~~~~RSSGPGGQ~VNKt~SkV~l~~~~~~~~lp~~~~~~l~~~~~~r~~~~g~l~i~~~~~RSQ~~Nr~~a 87 (138)
T PRK09256 8 LVIPENELEWRFIRASGPGGQNVNKVSTAVELRFDIAASSLPEFYKERLLALAGHRITKDGVIVIKAQEFRSQERNREDA 87 (138)
T ss_pred CccCHHHeEEEEEEcCCCCcccccccceeeEEEechhhccCCHHHHHHHHHHhcCcccCCCcEEEEECCcCCHHHHHHHH
Confidence 7899999999999999999999999999999995 77 35 999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2395 271 LKILLARIKDSKL 283 (570)
Q Consensus 271 ~~~l~~~l~~~~~ 283 (570)
+++|.++|.++..
T Consensus 88 l~kL~~~i~~~~~ 100 (138)
T PRK09256 88 LERLVALIREALK 100 (138)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999997664
No 30
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.82 E-value=9.1e-19 Score=166.66 Aligned_cols=165 Identities=24% Similarity=0.294 Sum_probs=128.9
Q ss_pred ccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEE
Q psy2395 376 VLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKF 455 (570)
Q Consensus 376 ~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~ 455 (570)
+|+|++++..+.+.+.. .++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++|+..+ +.++++
T Consensus 1 ~~~~~~d~~~l~~~l~~---~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~ 70 (179)
T TIGR00537 1 VYEPAEDSLLLEANLRE---LKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLN----NVGLDV 70 (179)
T ss_pred CCCCCccHHHHHHHHHh---cCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHc----CCceEE
Confidence 57899999777666532 245789999999999999999765 38999999999999999999863 456899
Q ss_pred EEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC
Q psy2395 456 IKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN 535 (570)
Q Consensus 456 ~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~ 535 (570)
+.+|+.+.. .++||+|++||||++.+...... .....++.++.+|...+..++..+.++|+|||.+++..+..
T Consensus 71 ~~~d~~~~~---~~~fD~Vi~n~p~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 71 VMTDLFKGV---RGKFDVILFNPPYLPLEDDLRRG----DWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred EEccccccc---CCcccEEEECCCCCCCcchhccc----chhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 999987643 25899999999998664321111 11133555667777888999999999999999998876554
Q ss_pred -CHHHHHHHHHHCCCeeEEEEec
Q psy2395 536 -QSNLVRKLLFKYGFSDIKSWRD 557 (570)
Q Consensus 536 -~~~~l~~ll~~~Gf~~i~~~~D 557 (570)
+...+.+.+.+.||....+..-
T Consensus 144 ~~~~~~~~~l~~~gf~~~~~~~~ 166 (179)
T TIGR00537 144 NGEPDTFDKLDERGFRYEIVAER 166 (179)
T ss_pred CChHHHHHHHHhCCCeEEEEEEe
Confidence 4888999999999987655543
No 31
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.82 E-value=2.6e-19 Score=175.25 Aligned_cols=175 Identities=22% Similarity=0.346 Sum_probs=136.4
Q ss_pred cCeeeeecCCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy2395 366 YGLVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKK 445 (570)
Q Consensus 366 ~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~ 445 (570)
....+..++.+|-+.-++-+|..++.. ....+|||+|||+|.+++.+|.+.+ .++|+|||+++++.+.|++|...|
T Consensus 16 ~~~~I~q~~~~~~~~~DaiLL~~~~~~---~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln 91 (248)
T COG4123 16 KQFFIIQDRCGFRYGTDAILLAAFAPV---PKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALN 91 (248)
T ss_pred cceEEEeCCCccccccHHHHHHhhccc---ccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhC
Confidence 345566678888888888888777632 3478999999999999999998865 489999999999999999999976
Q ss_pred cccCCCCEEEEEcccccccccCC-CceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcccc
Q psy2395 446 LTKYNIPIKFIKSNWYNNLQNYK-KLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVK 524 (570)
Q Consensus 446 ~~~~~~~v~~~~~D~~~~l~~~~-~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkp 524 (570)
. ...+++++++|+.+...... .+||+|+|||||+...... . -.|..+...+.. ...+..+++.+.++|||
T Consensus 92 ~--l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~-~-----~~~~~~~Ar~e~-~~~le~~i~~a~~~lk~ 162 (248)
T COG4123 92 P--LEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRL-N-----ENPLRAIARHEI-TLDLEDLIRAAAKLLKP 162 (248)
T ss_pred c--chhceeEehhhHHHhhhcccccccCEEEeCCCCCCCcccc-C-----cChhhhhhhhhh-cCCHHHHHHHHHHHccC
Confidence 3 56689999999976554333 4699999999999876541 1 112222222211 12468999999999999
Q ss_pred CeEEEEEEcCCCHHHHHHHHHHCCCeeEE
Q psy2395 525 NGLLLIEHGYNQSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 525 gG~l~~~~~~~~~~~l~~ll~~~Gf~~i~ 553 (570)
||.++++++.....++..++++.+|...+
T Consensus 163 ~G~l~~V~r~erl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 163 GGRLAFVHRPERLAEIIELLKSYNLEPKR 191 (248)
T ss_pred CCEEEEEecHHHHHHHHHHHHhcCCCceE
Confidence 99999999999999999999998887644
No 32
>KOG3191|consensus
Probab=99.80 E-value=1.6e-18 Score=158.39 Aligned_cols=185 Identities=24% Similarity=0.344 Sum_probs=153.5
Q ss_pred CccccchhHHHHHHHHHhhcC----CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCC
Q psy2395 375 DVLIPRPETELLVDLIVKKTF----EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYN 450 (570)
Q Consensus 375 ~~~~pr~~t~~l~~~~~~~~~----~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~ 450 (570)
++|-|..+|..|++.+..... ..+..++|||||||.++..|++...++....++||||.|++.+++.++.| +
T Consensus 17 dVYEPaEDTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n----~ 92 (209)
T KOG3191|consen 17 DVYEPAEDTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN----R 92 (209)
T ss_pred hccCccchhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc----C
Confidence 789999999999998865421 24678999999999999999987666788999999999999999999974 5
Q ss_pred CCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 451 IPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 451 ~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
..+..++.|+...+.. ++.|+++.||||.+.+....-. ..-..++.||.+|.+...+++..+...|.|.|++++
T Consensus 93 ~~~~~V~tdl~~~l~~--~~VDvLvfNPPYVpt~~~~i~~----~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Yl 166 (209)
T KOG3191|consen 93 VHIDVVRTDLLSGLRN--ESVDVLVFNPPYVPTSDEEIGD----EGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYL 166 (209)
T ss_pred CccceeehhHHhhhcc--CCccEEEECCCcCcCCcccchh----HHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEe
Confidence 6689999999988875 8999999999999987542211 111357789999999999999999999999999988
Q ss_pred EE-cCCCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEEe
Q psy2395 531 EH-GYNQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 531 ~~-~~~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~ 569 (570)
.. ..+..+++.++++..||.....+....|.+-..+-++
T Consensus 167 v~~~~N~p~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf 206 (209)
T KOG3191|consen 167 VALRANKPKEILKILEKKGYGVRIAMQRKAGGETLSILKF 206 (209)
T ss_pred eehhhcCHHHHHHHHhhcccceeEEEEEecCCceEEEEEE
Confidence 54 5577888999999999998888888888776665543
No 33
>PRK14968 putative methyltransferase; Provisional
Probab=99.78 E-value=2e-17 Score=158.11 Aligned_cols=182 Identities=26% Similarity=0.370 Sum_probs=141.1
Q ss_pred cCCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCC
Q psy2395 373 TSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIP 452 (570)
Q Consensus 373 ~~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~ 452 (570)
++++|+|++++..+++.+.. .++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.+++|+..++.. +..
T Consensus 2 ~~~~~~p~~~~~~l~~~~~~---~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~ 74 (188)
T PRK14968 2 NDEVYEPAEDSFLLAENAVD---KKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIR-NNG 74 (188)
T ss_pred CCcccCcchhHHHHHHhhhc---cCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCC-Ccc
Confidence 57899999999988887753 45679999999999999999976 379999999999999999999865321 112
Q ss_pred EEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 453 IKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 453 v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
+.++.+|+.+.+.. .+||+|++||||.+....... .-....++.++.++...+..+++.+.++|+|||.+++.+
T Consensus 75 ~~~~~~d~~~~~~~--~~~d~vi~n~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 75 VEVIRSDLFEPFRG--DKFDVILFNPPYLPTEEEEEW----DDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred eEEEeccccccccc--cCceEEEECCCcCCCCchhhh----hhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 88999998775542 489999999999864321111 001123455666677788999999999999999998877
Q ss_pred cC-CCHHHHHHHHHHCCCeeEEEEecCCCCceEEEE
Q psy2395 533 GY-NQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQG 567 (570)
Q Consensus 533 ~~-~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~ 567 (570)
+. ...+.+.+++.++||..+.+.......+++.+.
T Consensus 149 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~ 184 (188)
T PRK14968 149 SSLTGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVL 184 (188)
T ss_pred cccCCHHHHHHHHHHCCCeeeeeeecccCCceEEEE
Confidence 65 456789999999999988887777777766654
No 34
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.75 E-value=5.6e-17 Score=170.06 Aligned_cols=141 Identities=16% Similarity=0.285 Sum_probs=109.7
Q ss_pred CeeeeecCCccccc---hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 367 GLVLNITSDVLIPR---PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 367 ~~~~~v~~~~~~pr---~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~ 443 (570)
++.+...++||... ..|+.+++.+.. ..+.+|||+|||+|.+++.+++.+| ..+|+++|+|+.|++.|++|+.
T Consensus 198 ~~~~~~~~gVFs~~~LD~GtrllL~~lp~---~~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~ 273 (378)
T PRK15001 198 DWTIHNHANVFSRTGLDIGARFFMQHLPE---NLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVE 273 (378)
T ss_pred eEEEEecCCccCCCCcChHHHHHHHhCCc---ccCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHH
Confidence 56777789999876 457777766532 2346999999999999999999876 6899999999999999999998
Q ss_pred hhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccc
Q psy2395 444 KKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV 523 (570)
Q Consensus 444 ~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk 523 (570)
.|+.....+++++.+|+++... ..+||+|+|||||+..... ......+++..+.++|+
T Consensus 274 ~n~~~~~~~v~~~~~D~l~~~~--~~~fDlIlsNPPfh~~~~~--------------------~~~ia~~l~~~a~~~Lk 331 (378)
T PRK15001 274 TNMPEALDRCEFMINNALSGVE--PFRFNAVLCNPPFHQQHAL--------------------TDNVAWEMFHHARRCLK 331 (378)
T ss_pred HcCcccCceEEEEEccccccCC--CCCEEEEEECcCcccCccC--------------------CHHHHHHHHHHHHHhcc
Confidence 7632112368999999876553 2589999999999843210 11244689999999999
Q ss_pred cCeEEEEEEc
Q psy2395 524 KNGLLLIEHG 533 (570)
Q Consensus 524 pgG~l~~~~~ 533 (570)
|||.++++..
T Consensus 332 pGG~L~iV~n 341 (378)
T PRK15001 332 INGELYIVAN 341 (378)
T ss_pred cCCEEEEEEe
Confidence 9999999863
No 35
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.75 E-value=7.1e-17 Score=165.55 Aligned_cols=200 Identities=16% Similarity=0.185 Sum_probs=139.9
Q ss_pred ccCee-eeecCCccccc-hhHHHHHHHHHhhcC---------CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHH
Q psy2395 365 FYGLV-LNITSDVLIPR-PETELLVDLIVKKTF---------EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKF 433 (570)
Q Consensus 365 f~~~~-~~v~~~~~~pr-~~t~~l~~~~~~~~~---------~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~ 433 (570)
+||+. +.++++.++|. |..-..+.++.+.+. .++.++||||||+|++...++...+ +++++|+|||+.
T Consensus 71 ~ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~ 149 (321)
T PRK11727 71 FYGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQ 149 (321)
T ss_pred hcCCCcccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHH
Confidence 45666 36889999988 655556666555431 1457999999999999998887655 689999999999
Q ss_pred HHHHHHHHHHhh-cccCCCCEEEEE-c---ccccccccCCCceeEEEECCCCCCCCCcccCC------CCccccc-c--c
Q psy2395 434 ALKIAKKNAKKK-LTKYNIPIKFIK-S---NWYNNLQNYKKLFNIIVANPPYIPKGDIHLNK------GDLRFEP-I--N 499 (570)
Q Consensus 434 al~~A~~n~~~~-~~~~~~~v~~~~-~---D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~------~~~~~ep-~--~ 499 (570)
+++.|++|+..| + ...++.++. . +++..+....++||+|+|||||+......... ...++.+ . +
T Consensus 150 Al~~A~~Nv~~Np~--l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l 227 (321)
T PRK11727 150 ALASAQAIISANPG--LNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVL 227 (321)
T ss_pred HHHHHHHHHHhccC--CcCcEEEEEccchhhhhhcccccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCcccc
Confidence 999999999986 3 234677754 3 33333322246899999999999876542111 0011111 0 1
Q ss_pred -------cc--cccCCChHHHHHHHHHHhhccccCeEEEEEEc-CCCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEEe
Q psy2395 500 -------AL--TDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG-YNQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 500 -------al--~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~ 569 (570)
.+ .||+ ..++..+++++..+++..|++...++ ......+.+.|++.|...+.+..-.+|...-.+--|
T Consensus 228 ~f~g~~~EL~~~GGe--~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~~qG~~~~~~vaW 305 (321)
T PRK11727 228 NFGGQQAELWCEGGE--VAFIKRMIEESKAFAKQVLWFTSLVSKKENLPPLYRALKKVGAVEVKTIEMAQGQKQSRFIAW 305 (321)
T ss_pred CCcchhhheeeCCcE--eeeehHhhHHHHHHHhhCcEEEEEeeccCCHHHHHHHHHHcCCceEEEEEEeCCCeeeEEEEe
Confidence 11 1222 57889999999999999999877665 478899999999999988888877777653333334
No 36
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=9.2e-17 Score=160.41 Aligned_cols=137 Identities=23% Similarity=0.341 Sum_probs=108.7
Q ss_pred CeeeeecCCccccc---hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 367 GLVLNITSDVLIPR---PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 367 ~~~~~v~~~~~~pr---~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~ 443 (570)
+++|.-.|+||.-. .-|+.|++.+.. ..+.+|||+|||.|.+++.+++..| ..+++.+|+|..|++.|++|+.
T Consensus 128 ~~~~~t~pGVFS~~~lD~GS~lLl~~l~~---~~~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~ 203 (300)
T COG2813 128 ELTFKTLPGVFSRDKLDKGSRLLLETLPP---DLGGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLA 203 (300)
T ss_pred ceEEEeCCCCCcCCCcChHHHHHHHhCCc---cCCCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHH
Confidence 56677789999655 467777776633 2345999999999999999999987 6899999999999999999999
Q ss_pred hhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccc
Q psy2395 444 KKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV 523 (570)
Q Consensus 444 ~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk 523 (570)
.|+. .+..++.+|..+... ++||+|||||||+.... -....-.+++..+.++|+
T Consensus 204 ~N~~---~~~~v~~s~~~~~v~---~kfd~IisNPPfh~G~~--------------------v~~~~~~~~i~~A~~~L~ 257 (300)
T COG2813 204 ANGV---ENTEVWASNLYEPVE---GKFDLIISNPPFHAGKA--------------------VVHSLAQEIIAAAARHLK 257 (300)
T ss_pred HcCC---CccEEEEeccccccc---ccccEEEeCCCccCCcc--------------------hhHHHHHHHHHHHHHhhc
Confidence 8632 123788899877665 48999999999984321 112334699999999999
Q ss_pred cCeEEEEEEc
Q psy2395 524 KNGLLLIEHG 533 (570)
Q Consensus 524 pgG~l~~~~~ 533 (570)
+||.|+++..
T Consensus 258 ~gGeL~iVan 267 (300)
T COG2813 258 PGGELWIVAN 267 (300)
T ss_pred cCCEEEEEEc
Confidence 9999999775
No 37
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.72 E-value=8.3e-17 Score=176.28 Aligned_cols=187 Identities=17% Similarity=0.239 Sum_probs=147.5
Q ss_pred CcceeeechhhhchHHHHHHHHHHHHHHhcCCCcee----ecCcccccCeeeeecCCccccchhHHHHHHHHHhhcCCCC
Q psy2395 323 SDVELIINNEKKLHKQEINILNKLIQRRILGEPIAY----IIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTFEKK 398 (570)
Q Consensus 323 ~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~----i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~~~~ 398 (570)
..-.++.+...+++.++.+.+..++.+ ++| |+|+..||+..|.+.+++. +++.+++.+. ..++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~y~~~~i~~~~~f~g~~~~v~~~v~----~te~l~~~~~---~~~~ 267 (475)
T PLN02336 201 KNQNQICWLWQKVSSTNDKGFQRFLDN------VQYKSSGILRYERVFGEGFVSTGGLE----TTKEFVDKLD---LKPG 267 (475)
T ss_pred CCcceEEEEEEeecCCcchhHHHHhhh------hccccccHHHHHHHhCCCCCCCchHH----HHHHHHHhcC---CCCC
Confidence 344578888899998888888888876 788 9999999999999998877 6777777653 3467
Q ss_pred CEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECC
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANP 478 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NP 478 (570)
.+|||+|||+|.+++.++... +++|+|+|+|+.+++.|++|+.. ...+++|.++|+.+. +.++++||+|+++-
T Consensus 268 ~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~----~~~~v~~~~~d~~~~-~~~~~~fD~I~s~~ 340 (475)
T PLN02336 268 QKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIG----RKCSVEFEVADCTKK-TYPDNSFDVIYSRD 340 (475)
T ss_pred CEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhc----CCCceEEEEcCcccC-CCCCCCEEEEEECC
Confidence 799999999999999999875 47999999999999999998763 345799999998663 32346899999964
Q ss_pred CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC---------------------CCH
Q psy2395 479 PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY---------------------NQS 537 (570)
Q Consensus 479 Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~---------------------~~~ 537 (570)
.+.... ....+++++.+.|+|||.+++.... ...
T Consensus 341 ~l~h~~-------------------------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 395 (475)
T PLN02336 341 TILHIQ-------------------------DKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDV 395 (475)
T ss_pred cccccC-------------------------CHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCH
Confidence 432211 2368899999999999999875311 124
Q ss_pred HHHHHHHHHCCCeeEEE
Q psy2395 538 NLVRKLLFKYGFSDIKS 554 (570)
Q Consensus 538 ~~l~~ll~~~Gf~~i~~ 554 (570)
..+.+++.++||..+.+
T Consensus 396 ~~~~~~l~~aGF~~i~~ 412 (475)
T PLN02336 396 QAYGQMLKDAGFDDVIA 412 (475)
T ss_pred HHHHHHHHHCCCeeeee
Confidence 56788899999998744
No 38
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.69 E-value=1.2e-15 Score=165.27 Aligned_cols=198 Identities=14% Similarity=0.209 Sum_probs=141.5
Q ss_pred CcceeeechhhhchHHHHHHHHHHHHHH-------hcCCCceeecCc--------ccccCeeeeecCCccccc--hhHHH
Q psy2395 323 SDVELIINNEKKLHKQEINILNKLIQRR-------ILGEPIAYIIGK--------KEFYGLVLNITSDVLIPR--PETEL 385 (570)
Q Consensus 323 ~~~~~~~~~~~~l~~~~~~~~~~~~~~r-------~~~~p~~~i~g~--------~~f~~~~~~v~~~~~~pr--~~t~~ 385 (570)
++..+++.....++..+.+.+.++..++ ..+.|.+++.|. .+|++..|.++|+.|.+. ..++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g~~~~~~~~~~~~~g~~f~~~~~~F~q~n~~~~e~ 284 (443)
T PRK13168 205 NGTALVLRHLEPLSEADRAKLRAFAEQHGLQLYLQPKGPDLVHLLGPADAQLSYYLPEFGLRLAFSPRDFIQVNAQVNQK 284 (443)
T ss_pred CceEEEEEEcCCCChHHHHHHHHHhhcccEEEEEECCCCcceeecccccCCcceEEEcCCeEEEECCCCeEEcCHHHHHH
Confidence 3344444222344444445555554433 136788888885 257899999999999753 56888
Q ss_pred HHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc
Q psy2395 386 LVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL 464 (570)
Q Consensus 386 l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l 464 (570)
+++.++..+. .++.+|||+|||+|.+++.++... .+|+|+|+|+.|++.|++|+..++. .+++|+++|+.+.+
T Consensus 285 l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~---~~v~~~~~d~~~~l 358 (443)
T PRK13168 285 MVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGL---DNVTFYHANLEEDF 358 (443)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEEeChHHhh
Confidence 9888887654 456799999999999999999764 5899999999999999999987532 25999999997644
Q ss_pred c---cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHH
Q psy2395 465 Q---NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVR 541 (570)
Q Consensus 465 ~---~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~ 541 (570)
. ..+.+||+|++||||... ..+++.+.+ ++|++++++.+.+.....-.
T Consensus 359 ~~~~~~~~~fD~Vi~dPPr~g~----------------------------~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl 409 (443)
T PRK13168 359 TDQPWALGGFDKVLLDPPRAGA----------------------------AEVMQALAK-LGPKRIVYVSCNPATLARDA 409 (443)
T ss_pred hhhhhhcCCCCEEEECcCCcCh----------------------------HHHHHHHHh-cCCCeEEEEEeChHHhhccH
Confidence 2 123579999999998621 233343333 69999999988775555445
Q ss_pred HHHHHCCCeeEEEE
Q psy2395 542 KLLFKYGFSDIKSW 555 (570)
Q Consensus 542 ~ll~~~Gf~~i~~~ 555 (570)
..|.+.||+..++.
T Consensus 410 ~~L~~~gY~l~~i~ 423 (443)
T PRK13168 410 GVLVEAGYRLKRAG 423 (443)
T ss_pred HHHhhCCcEEEEEE
Confidence 56667899876544
No 39
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.68 E-value=1.8e-16 Score=139.54 Aligned_cols=115 Identities=21% Similarity=0.305 Sum_probs=89.4
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc-cCCCceeEEEE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ-NYKKLFNIIVA 476 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fD~Iv~ 476 (570)
+.+|||+|||+|.+++.+++.+ ..+++|+|++|.+++.|+.|+..++ ...+++++++|+.+... ...++||+|++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNG--LDDRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCT--TTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHcc--CCceEEEEECchhhchhhccCceeEEEEE
Confidence 3589999999999999999887 4799999999999999999998742 33469999999977552 23479999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
||||....... ......+..+++.+.++|+|||.+++.++
T Consensus 77 npP~~~~~~~~-----------------~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 77 NPPYGPRSGDK-----------------AALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp --STTSBTT---------------------GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCccccccc-----------------hhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99998542110 01112668999999999999999998775
No 40
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.68 E-value=1e-15 Score=147.48 Aligned_cols=150 Identities=17% Similarity=0.215 Sum_probs=110.7
Q ss_pred CCCceeecCcccccCeeeeecCCccccchhHHHHHHHHHhhcC--CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeC
Q psy2395 353 GEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTF--EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDI 430 (570)
Q Consensus 353 ~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~--~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDi 430 (570)
|.+.=+|+|.. |+|..+.+.++.- .||.++.+.+.++..+. .++.+|||+|||||.+++.++..+ ..+|+++|+
T Consensus 9 ~~~~mrIi~g~-~~g~~l~~~~~~~-~Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~ 84 (199)
T PRK10909 9 GSGQIRIIGGQ-WRGRKLPVPDSPG-LRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEM 84 (199)
T ss_pred CCCCEEEEeec-cCCCEeCCCCCCC-cCcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEEC
Confidence 44434677655 8999998866432 38888888777766542 356799999999999999755444 369999999
Q ss_pred CHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHH
Q psy2395 431 SKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSS 510 (570)
Q Consensus 431 s~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~ 510 (570)
++.+++.|++|++.++. .++.++++|+.+.+.....+||+|++||||... .
T Consensus 85 ~~~a~~~a~~Nl~~~~~---~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~g--------------------------~ 135 (199)
T PRK10909 85 DRAVAQQLIKNLATLKA---GNARVVNTNALSFLAQPGTPHNVVFVDPPFRKG--------------------------L 135 (199)
T ss_pred CHHHHHHHHHHHHHhCC---CcEEEEEchHHHHHhhcCCCceEEEECCCCCCC--------------------------h
Confidence 99999999999987531 269999999977654333579999999999631 2
Q ss_pred HHHHHHHHh--hccccCeEEEEEEcCC
Q psy2395 511 IKEIVKNAS--KYLVKNGLLLIEHGYN 535 (570)
Q Consensus 511 ~~~~l~~~~--~~LkpgG~l~~~~~~~ 535 (570)
+..+++.+. .+|+|+|++++++...
T Consensus 136 ~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 136 LEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred HHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 234444433 3589999999988653
No 41
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.67 E-value=2.4e-15 Score=156.71 Aligned_cols=137 Identities=24% Similarity=0.405 Sum_probs=108.7
Q ss_pred CeeeeecCCccccc---hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 367 GLVLNITSDVLIPR---PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 367 ~~~~~v~~~~~~pr---~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~ 443 (570)
++.+...|++|.+. +.|+.+++.+.. ....+|||+|||+|.+++.+++..+ ..+|+++|+|+.|++.|++|+.
T Consensus 166 ~l~i~~~pgvFs~~~lD~gt~lLl~~l~~---~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~ 241 (342)
T PRK09489 166 GLTVKTLPGVFSRDGLDVGSQLLLSTLTP---HTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLA 241 (342)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHhccc---cCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHH
Confidence 56788889999875 456777766532 2345899999999999999998875 5799999999999999999999
Q ss_pred hhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccc
Q psy2395 444 KKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV 523 (570)
Q Consensus 444 ~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk 523 (570)
.+ +....++.+|+++.. .++||+|++||||+... .........++..+.++|+
T Consensus 242 ~n----~l~~~~~~~D~~~~~---~~~fDlIvsNPPFH~g~--------------------~~~~~~~~~~i~~a~~~Lk 294 (342)
T PRK09489 242 AN----GLEGEVFASNVFSDI---KGRFDMIISNPPFHDGI--------------------QTSLDAAQTLIRGAVRHLN 294 (342)
T ss_pred Hc----CCCCEEEEccccccc---CCCccEEEECCCccCCc--------------------cccHHHHHHHHHHHHHhcC
Confidence 75 344678888886643 36899999999997421 1123466899999999999
Q ss_pred cCeEEEEEEcC
Q psy2395 524 KNGLLLIEHGY 534 (570)
Q Consensus 524 pgG~l~~~~~~ 534 (570)
|||.++++...
T Consensus 295 pgG~L~iVan~ 305 (342)
T PRK09489 295 SGGELRIVANA 305 (342)
T ss_pred cCCEEEEEEeC
Confidence 99999987654
No 42
>PHA03411 putative methyltransferase; Provisional
Probab=99.65 E-value=2.1e-15 Score=149.92 Aligned_cols=155 Identities=14% Similarity=0.191 Sum_probs=113.8
Q ss_pred CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCE
Q psy2395 374 SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPI 453 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v 453 (570)
...|+|......++ .. .....+|||+|||+|.+++.++...+ ..+|+|+|+|+.|++.|++|.. ++
T Consensus 46 G~FfTP~~i~~~f~---~~--~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~--------~v 111 (279)
T PHA03411 46 GAFFTPEGLAWDFT---ID--AHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLP--------EA 111 (279)
T ss_pred eeEcCCHHHHHHHH---hc--cccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCc--------CC
Confidence 44566765544332 11 22456999999999999999887653 4699999999999999988742 37
Q ss_pred EEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHH--HHHHHHHHhhccccCeEEEEE
Q psy2395 454 KFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSS--IKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 454 ~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~--~~~~l~~~~~~LkpgG~l~~~ 531 (570)
.++++|+.+... ..+||+|++||||+...... .....+..|+..|.+. +..++.....+|+|+|.+++.
T Consensus 112 ~~v~~D~~e~~~--~~kFDlIIsNPPF~~l~~~d-------~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 112 EWITSDVFEFES--NEKFDVVISNPPFGKINTTD-------TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred EEEECchhhhcc--cCCCcEEEEcCCccccCchh-------hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 899999977543 36899999999998643211 1222345566777766 478999999999999988775
Q ss_pred EcC-------CCHHHHHHHHHHCCCee
Q psy2395 532 HGY-------NQSNLVRKLLFKYGFSD 551 (570)
Q Consensus 532 ~~~-------~~~~~l~~ll~~~Gf~~ 551 (570)
... ....+..+++.++||..
T Consensus 183 yss~~~y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 183 YSGRPYYDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred EeccccccccCCHHHHHHHHHhcCcEe
Confidence 533 23678899999999863
No 43
>PHA03412 putative methyltransferase; Provisional
Probab=99.63 E-value=3.7e-15 Score=144.93 Aligned_cols=147 Identities=15% Similarity=0.251 Sum_probs=104.0
Q ss_pred CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcC--CCcEEEEEeCCHHHHHHHHHHHHhhcccCCC
Q psy2395 374 SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSK--NKIEIIATDISKFALKIAKKNAKKKLTKYNI 451 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~--~~~~V~gvDis~~al~~A~~n~~~~~~~~~~ 451 (570)
...|+|......++... ..+.+|||+|||||.+++.+++..+ +..+|+|+|+++.+++.|++|..
T Consensus 31 GqFfTP~~iAr~~~i~~-----~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-------- 97 (241)
T PHA03412 31 GAFFTPIGLARDFTIDA-----CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-------- 97 (241)
T ss_pred CccCCCHHHHHHHHHhc-----cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc--------
Confidence 44577877666554221 2367999999999999999987642 24689999999999999998864
Q ss_pred CEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccc-cccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 452 PIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINAL-TDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 452 ~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al-~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
++.++++|+.... .+++||+||+||||++... +. .+..+|..+...++..+.+++++|+. ++
T Consensus 98 ~~~~~~~D~~~~~--~~~~FDlIIsNPPY~~~~~--------------~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 98 EATWINADALTTE--FDTLFDMAISNPPFGKIKT--------------SDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred CCEEEEcchhccc--ccCCccEEEECCCCCCccc--------------cccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 2789999996532 2468999999999997431 11 12245778889999999996666664 43
Q ss_pred E---EcC-------------CCHHHHHHHHHHCCCe
Q psy2395 531 E---HGY-------------NQSNLVRKLLFKYGFS 550 (570)
Q Consensus 531 ~---~~~-------------~~~~~l~~ll~~~Gf~ 550 (570)
- .+. ..+.+..++.++.|+.
T Consensus 161 P~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (241)
T PHA03412 161 PQMSANFRYSGTHYFRQDESTTSSKCKKFLDETGLE 196 (241)
T ss_pred CcccccCcccCccceeeccCcccHHHHHHHHhcCee
Confidence 1 111 1245667777777653
No 44
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.62 E-value=2.7e-14 Score=136.35 Aligned_cols=139 Identities=14% Similarity=0.188 Sum_probs=111.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
+++.+|||+|||+|.+++.+++..+ +++|+|+|+|+.+++.|++|+..++ . .+++++++|+.+. .. .++||+|+
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~--l-~~i~~~~~d~~~~-~~-~~~fDlV~ 117 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELG--L-KNVTVVHGRAEEF-GQ-EEKFDVVT 117 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcC--C-CCEEEEeccHhhC-CC-CCCccEEE
Confidence 4578999999999999999998765 6899999999999999999998753 2 2499999999663 33 56899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEEEE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
+|. + ..+..+++.+.++|+|||.+++..+......+.++.+..|+...+.+
T Consensus 118 ~~~-~----------------------------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 118 SRA-V----------------------------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred Ecc-c----------------------------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeE
Confidence 962 0 12467889999999999999999999999999999999998854433
Q ss_pred ----ecCCCCceEEEEEe
Q psy2395 556 ----RDLSGIERVTQGKI 569 (570)
Q Consensus 556 ----~D~~g~~R~~~~~~ 569 (570)
..+.|-.-+++-++
T Consensus 169 ~~~~~~~~~~~~~~~~~~ 186 (187)
T PRK00107 169 ELTLPGLDGERHLVIIRK 186 (187)
T ss_pred EEecCCCCCcEEEEEEec
Confidence 34555556666543
No 45
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2.1e-14 Score=144.50 Aligned_cols=156 Identities=22% Similarity=0.287 Sum_probs=118.2
Q ss_pred CeeeeecCCccccc---hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 367 GLVLNITSDVLIPR---PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 367 ~~~~~v~~~~~~pr---~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~ 443 (570)
...+.++|+.=+-. |.|...++++-... .++.+|||+|||||.+++++++.+ ..+|+|+|+||.+++.|+.|+.
T Consensus 130 ~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~-~~g~~vlDvGcGSGILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~ 206 (300)
T COG2264 130 ELNIELDPGLAFGTGTHPTTSLCLEALEKLL-KKGKTVLDVGCGSGILAIAAAKLG--AKKVVGVDIDPQAVEAARENAR 206 (300)
T ss_pred ceEEEEccccccCCCCChhHHHHHHHHHHhh-cCCCEEEEecCChhHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHH
Confidence 34466666654433 78888888876653 478899999999999999999987 4689999999999999999999
Q ss_pred hhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccc
Q psy2395 444 KKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV 523 (570)
Q Consensus 444 ~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk 523 (570)
.|+... .++....+...... .++||+||+|-- .+.+..+...+.+.|+
T Consensus 207 ~N~v~~--~~~~~~~~~~~~~~--~~~~DvIVANIL----------------------------A~vl~~La~~~~~~lk 254 (300)
T COG2264 207 LNGVEL--LVQAKGFLLLEVPE--NGPFDVIVANIL----------------------------AEVLVELAPDIKRLLK 254 (300)
T ss_pred HcCCch--hhhcccccchhhcc--cCcccEEEehhh----------------------------HHHHHHHHHHHHHHcC
Confidence 864221 12233333322222 258999999841 1345788899999999
Q ss_pred cCeEEEE-EEcCCCHHHHHHHHHHCCCeeEEEEec
Q psy2395 524 KNGLLLI-EHGYNQSNLVRKLLFKYGFSDIKSWRD 557 (570)
Q Consensus 524 pgG~l~~-~~~~~~~~~l~~ll~~~Gf~~i~~~~D 557 (570)
|||++++ .+=.++.+.+.+.+.+.||..+.+...
T Consensus 255 pgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 255 PGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred CCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec
Confidence 9999988 344578899999999999999888776
No 46
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.61 E-value=9.1e-15 Score=152.51 Aligned_cols=135 Identities=14% Similarity=0.089 Sum_probs=104.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
+++.+|||+|||||.+++.++.. +.+++|+|+|+.|+..|+.|+..++. . ++.++++|+.+ ++...++||+|+
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~--~-~i~~~~~D~~~-l~~~~~~~D~Iv 253 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGI--E-DFFVKRGDATK-LPLSSESVDAIA 253 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCC--C-CCeEEecchhc-CCcccCCCCEEE
Confidence 56779999999999999988764 46899999999999999999987532 1 37899999976 343347899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEEEE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
+||||...... .+......+..++..+.+.|+|||++++.++... .+.++++++|| ++..+
T Consensus 254 ~dPPyg~~~~~----------------~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~--~~~~~~~~~g~-i~~~~ 314 (329)
T TIGR01177 254 TDPPYGRSTTA----------------AGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI--DLESLAEDAFR-VVKRF 314 (329)
T ss_pred ECCCCcCcccc----------------cCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC--CHHHHHhhcCc-chhee
Confidence 99999753211 0111224678999999999999999998887543 44567889999 76555
Q ss_pred e
Q psy2395 556 R 556 (570)
Q Consensus 556 ~ 556 (570)
.
T Consensus 315 ~ 315 (329)
T TIGR01177 315 E 315 (329)
T ss_pred e
Confidence 4
No 47
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.61 E-value=2.1e-14 Score=136.77 Aligned_cols=134 Identities=15% Similarity=0.233 Sum_probs=104.6
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|.+++.++...+ +.+|+|+|+|+.+++.+++|+..++ . .+++++++|+.+. . ..++||+|++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~--~-~~i~~i~~d~~~~-~-~~~~fD~I~s 115 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELG--L-NNVEIVNGRAEDF-Q-HEEQFDVITS 115 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhC--C-CCeEEEecchhhc-c-ccCCccEEEe
Confidence 478999999999999999987765 5799999999999999999998752 1 2599999999663 2 2478999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHH---CCCeeEE
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFK---YGFSDIK 553 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~---~Gf~~i~ 553 (570)
|. + ..+..+++.+.++|+|||.+++.++......+..+.++ .||..++
T Consensus 116 ~~-~----------------------------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~ 166 (181)
T TIGR00138 116 RA-L----------------------------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLE 166 (181)
T ss_pred hh-h----------------------------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEee
Confidence 74 1 12356778889999999999999988887777777666 6998876
Q ss_pred EEecCCCCceEEE
Q psy2395 554 SWRDLSGIERVTQ 566 (570)
Q Consensus 554 ~~~D~~g~~R~~~ 566 (570)
... ..+-+|-++
T Consensus 167 ~~~-~~~~~~~~~ 178 (181)
T TIGR00138 167 VPP-LTGPDRHLV 178 (181)
T ss_pred ccc-cCCCceEEE
Confidence 543 333355443
No 48
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.60 E-value=3.7e-14 Score=143.02 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=109.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||||.++..+++..++.++|+|+|+|+.|++.|+++..........+++++++|+.+ ++..+++||+|+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~-lp~~~~sfD~V~ 150 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD-LPFDDCYFDAIT 150 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc-CCCCCCCEeEEE
Confidence 4678999999999999999987754357999999999999999877542110123469999999854 455457899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-cC--------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-GY-------------------- 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~~-------------------- 534 (570)
++-.++..+ ....+++++.+.|||||.+++.. ..
T Consensus 151 ~~~~l~~~~-------------------------d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~ 205 (261)
T PLN02233 151 MGYGLRNVV-------------------------DRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVP 205 (261)
T ss_pred EecccccCC-------------------------CHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhH
Confidence 964332211 23678999999999999987632 11
Q ss_pred ---------------------CCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEE
Q psy2395 535 ---------------------NQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGK 568 (570)
Q Consensus 535 ---------------------~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~ 568 (570)
...+++.++++++||..+..+.-..|.-++.+|+
T Consensus 206 ~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 206 VATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred HHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 1345677899999999998776666777777765
No 49
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.60 E-value=1.5e-14 Score=164.58 Aligned_cols=145 Identities=16% Similarity=0.185 Sum_probs=112.8
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||||.+++.++..+ ..+|++||+|+.+++.|++|+..|+.. ..+++++++|+++.+....++||+||+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng~~-~~~v~~i~~D~~~~l~~~~~~fDlIil 614 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNGLS-GRQHRLIQADCLAWLKEAREQFDLIFI 614 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCC-ccceEEEEccHHHHHHHcCCCcCEEEE
Confidence 46799999999999999999764 357999999999999999999987421 136999999998766433468999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEEEEe
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
||||+...... .. ..++...|..++..+.++|+|||.+++.+...+.....+.+.+.|+....+..
T Consensus 615 DPP~f~~~~~~--~~------------~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 615 DPPTFSNSKRM--ED------------SFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEITA 680 (702)
T ss_pred CCCCCCCCCcc--ch------------hhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEec
Confidence 99998643110 00 01234567889999999999999999988777666668888889988765554
Q ss_pred cC
Q psy2395 557 DL 558 (570)
Q Consensus 557 D~ 558 (570)
..
T Consensus 681 ~~ 682 (702)
T PRK11783 681 KT 682 (702)
T ss_pred CC
Confidence 33
No 50
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.59 E-value=1.6e-14 Score=126.07 Aligned_cols=111 Identities=21% Similarity=0.372 Sum_probs=85.9
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
|+.+|||+|||+|.+++.+++..+ +.+|+|+|+||.+++.|++++... ....+++++++|+ .......++||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~i~~~~~d~-~~~~~~~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEE--GLSDRITFVQGDA-EFDPDFLEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHT--TTTTTEEEEESCC-HGGTTTSSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhc--CCCCCeEEEECcc-ccCcccCCCCCEEEE
Confidence 467999999999999999998654 689999999999999999999543 2456899999999 333333468999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
+. +.... +. +.+....+++.+.+.|+|||++++..
T Consensus 77 ~~-~~~~~----------------~~----~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SG-FTLHF----------------LL----PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CS-GSGGG----------------CC----HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-Ccccc----------------cc----chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 65 31000 00 11345788999999999999999864
No 51
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.59 E-value=7.7e-14 Score=138.11 Aligned_cols=145 Identities=13% Similarity=0.170 Sum_probs=112.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++..++..+|+|+|+|+.+++.|++++.... -.+++++++|+.+ .+...++||+|+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~-~~~~~~~fD~V~ 119 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG---LHNVELVHGNAME-LPFDDNSFDYVT 119 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC---CCceEEEEechhc-CCCCCCCccEEE
Confidence 467899999999999999999875446799999999999999999987531 2369999999865 333347899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-C-------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-N------------------- 535 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-~------------------- 535 (570)
++.++... ..+..+++++.+.|+|||++++.... .
T Consensus 120 ~~~~l~~~-------------------------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ 174 (231)
T TIGR02752 120 IGFGLRNV-------------------------PDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPL 174 (231)
T ss_pred EecccccC-------------------------CCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHH
Confidence 97543321 12367888999999999999864321 1
Q ss_pred -----------------------CHHHHHHHHHHCCCeeEEEEecCCCCceEEEEEe
Q psy2395 536 -----------------------QSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 536 -----------------------~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~ 569 (570)
..+++.++|+++||..+++..-..|....++|.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 175 FGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred hhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 1255788999999999988877778888888763
No 52
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.58 E-value=8.3e-15 Score=144.85 Aligned_cols=106 Identities=18% Similarity=0.258 Sum_probs=74.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||||.++..+++...+..+|+|+|+|+.|++.|++.+...+ ..+++++++|+.+ ++..+++||+|+
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~---~~~i~~v~~da~~-lp~~d~sfD~v~ 121 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG---LQNIEFVQGDAED-LPFPDNSFDAVT 121 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE-BTTB---S-TT-EEEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC---CCCeeEEEcCHHH-hcCCCCceeEEE
Confidence 467899999999999999999876556899999999999999999988632 2379999999955 666678999999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
+---+.. +......++++.++|||||.+++
T Consensus 122 ~~fglrn-------------------------~~d~~~~l~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 122 CSFGLRN-------------------------FPDRERALREMYRVLKPGGRLVI 151 (233)
T ss_dssp EES-GGG--------------------------SSHHHHHHHHHHHEEEEEEEEE
T ss_pred HHhhHHh-------------------------hCCHHHHHHHHHHHcCCCeEEEE
Confidence 8321110 11347889999999999999875
No 53
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=5.8e-14 Score=137.77 Aligned_cols=143 Identities=22% Similarity=0.315 Sum_probs=108.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||||.+++.+++..+ .++|+|+|+|+.|++.|++.+...+ ..+++|+++|+. .+|.++.+||+|.
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~---~~~i~fv~~dAe-~LPf~D~sFD~vt 124 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKG---VQNVEFVVGDAE-NLPFPDNSFDAVT 124 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccC---ccceEEEEechh-hCCCCCCccCEEE
Confidence 3689999999999999999999887 6899999999999999999988632 123999999994 5778789999999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE-EEcCCC------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI-EHGYNQ------------------ 536 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~-~~~~~~------------------ 536 (570)
+.--.. ....+...+++++|+|||||++++ ++....
T Consensus 125 ~~fglr-------------------------nv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P 179 (238)
T COG2226 125 ISFGLR-------------------------NVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLP 179 (238)
T ss_pred eeehhh-------------------------cCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhh
Confidence 842211 112468999999999999998865 432211
Q ss_pred -------------------------HHHHHHHHHHCCCeeEEEEecCCCCceEEEEE
Q psy2395 537 -------------------------SNLVRKLLFKYGFSDIKSWRDLSGIERVTQGK 568 (570)
Q Consensus 537 -------------------------~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~ 568 (570)
.+.+.+.+.+.||..+....-..|.--+.+|.
T Consensus 180 ~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~ 236 (238)
T COG2226 180 LIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGY 236 (238)
T ss_pred hhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEe
Confidence 25677778888998887444445554444443
No 54
>KOG3429|consensus
Probab=99.57 E-value=3.1e-15 Score=133.37 Aligned_cols=69 Identities=38% Similarity=0.532 Sum_probs=62.2
Q ss_pred cccCCCCeEEEEeeccCCCCcccccccceEEEE-------ecC-----------------Cc-eEEEEeccccHHHHHHH
Q psy2395 215 ININPADLRIDTYRASGAGGQHINKTDSAVRIT-------HIP-----------------TG-IVVQCQNDRSQHKNKAF 269 (570)
Q Consensus 215 ~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~-------h~p-----------------~g-i~~~~~~~rsq~~n~~~ 269 (570)
-.||.+.+.+.|.||||||||||||++|+|.++ +|| .| |++.++.+|||+.|.++
T Consensus 35 g~ipld~~~i~y~RSSGPGGQNVNKvNTKv~vrf~vs~a~Wipe~~R~~~~~~~~~rink~gelvI~Sd~TRsq~~NiaD 114 (172)
T KOG3429|consen 35 GKIPLDQLEISYSRSSGPGGQNVNKVNTKVEVRFKVSNAEWIPEFLRNKLLTTEKNRINKDGELVIYSDKTRSQHKNIAD 114 (172)
T ss_pred CCCchhheEEEEeecCCCCCcccccccceEEEEEecchhhhccHHHHHHHHHHHHHhhccCccEEEecchhHHhhccHHH
Confidence 468888999999999999999999999999998 355 24 99999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy2395 270 ALKILLARIKDSKL 283 (570)
Q Consensus 270 a~~~l~~~l~~~~~ 283 (570)
|+++|++.|++.+.
T Consensus 115 cleKlr~~I~~~~~ 128 (172)
T KOG3429|consen 115 CLEKLRDIIRAAEQ 128 (172)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999997654
No 55
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.8e-13 Score=127.19 Aligned_cols=145 Identities=19% Similarity=0.286 Sum_probs=104.4
Q ss_pred ccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEE
Q psy2395 376 VLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKF 455 (570)
Q Consensus 376 ~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~ 455 (570)
+.+|.+.+..++..+.....-.+.+|+|+|||||.+++.++..++ .+|+|+|+++++++.++.|+.+ +..++.|
T Consensus 24 Y~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~----l~g~v~f 97 (198)
T COG2263 24 YRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEE----LLGDVEF 97 (198)
T ss_pred cCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHh----hCCceEE
Confidence 345667666666555432223567899999999999999998874 7999999999999999999997 4667999
Q ss_pred EEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC
Q psy2395 456 IKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN 535 (570)
Q Consensus 456 ~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~ 535 (570)
+++|+.+. ..+||.+++||||..... + ....++...++.+ -.++-.+...
T Consensus 98 ~~~dv~~~----~~~~dtvimNPPFG~~~r------------------h-aDr~Fl~~Ale~s-------~vVYsiH~a~ 147 (198)
T COG2263 98 VVADVSDF----RGKFDTVIMNPPFGSQRR------------------H-ADRPFLLKALEIS-------DVVYSIHKAG 147 (198)
T ss_pred EEcchhhc----CCccceEEECCCCccccc------------------c-CCHHHHHHHHHhh-------heEEEeeccc
Confidence 99999542 368999999999974310 0 1123444444432 2344455566
Q ss_pred CHHHHHHHHHHCCCeeEEEEe
Q psy2395 536 QSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 536 ~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
..+-+.+.....|+.....+.
T Consensus 148 ~~~f~~~~~~~~G~~v~~~~~ 168 (198)
T COG2263 148 SRDFVEKFAADLGGTVTHIER 168 (198)
T ss_pred cHHHHHHHHHhcCCeEEEEEE
Confidence 777788888899988765543
No 56
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.56 E-value=2e-13 Score=148.07 Aligned_cols=168 Identities=20% Similarity=0.260 Sum_probs=115.9
Q ss_pred CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCE
Q psy2395 374 SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPI 453 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v 453 (570)
.+.+++...+..++..++. ..++.+|||+|||+|..++.++....+..+|+|+|+++.+++.+++|+..++. .++
T Consensus 229 ~G~~~~qd~~s~lv~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~---~~v 303 (444)
T PRK14902 229 DGLITIQDESSMLVAPALD--PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL---TNI 303 (444)
T ss_pred CceEEEEChHHHHHHHHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeE
Confidence 4555566555555554443 34677999999999999999998763357999999999999999999987532 249
Q ss_pred EEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCCh----HHHHHHHHHHhhccccCeEEE
Q psy2395 454 KFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGL----SSIKEIVKNASKYLVKNGLLL 529 (570)
Q Consensus 454 ~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl----~~~~~~l~~~~~~LkpgG~l~ 529 (570)
.++++|+.+......++||+|++|||+..... ..+.|...+.....++ .....++..+.++|+|||.++
T Consensus 304 ~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~-------~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lv 376 (444)
T PRK14902 304 ETKALDARKVHEKFAEKFDKILVDAPCSGLGV-------IRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILV 376 (444)
T ss_pred EEEeCCcccccchhcccCCEEEEcCCCCCCee-------eccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 99999997643222368999999999764322 1233433333322222 234678999999999999998
Q ss_pred EEEcC----CCHHHHHHHHHHCC-CeeEE
Q psy2395 530 IEHGY----NQSNLVRKLLFKYG-FSDIK 553 (570)
Q Consensus 530 ~~~~~----~~~~~l~~ll~~~G-f~~i~ 553 (570)
+.+.. .+...+..++++++ |..+.
T Consensus 377 ystcs~~~~Ene~vv~~~l~~~~~~~~~~ 405 (444)
T PRK14902 377 YSTCTIEKEENEEVIEAFLEEHPEFELVP 405 (444)
T ss_pred EEcCCCChhhhHHHHHHHHHhCCCcEEec
Confidence 75432 23445566677653 66544
No 57
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.56 E-value=1.5e-13 Score=131.76 Aligned_cols=125 Identities=18% Similarity=0.217 Sum_probs=100.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.+++.+++.++ +.+|+|+|+|+.+++.|++|+..++. .+++++++|+...+ .++||+|+
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~---~~i~~~~~d~~~~~---~~~~D~v~ 102 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGC---GNIDIIPGEAPIEL---PGKADAIF 102 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCC---CCeEEEecCchhhc---CcCCCEEE
Confidence 4677999999999999999998875 58999999999999999999987521 35899999984332 35799999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-cCCCHHHHHHHHHHCCCeeEEE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-GYNQSNLVRKLLFKYGFSDIKS 554 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~l~~ll~~~Gf~~i~~ 554 (570)
++... ..+..+++.+.+.|+|||++++.. ...+...+.+++.+.||..+++
T Consensus 103 ~~~~~----------------------------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 103 IGGSG----------------------------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred ECCCc----------------------------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceE
Confidence 95321 123677888999999999998864 5677788899999999987654
Q ss_pred E
Q psy2395 555 W 555 (570)
Q Consensus 555 ~ 555 (570)
.
T Consensus 155 ~ 155 (187)
T PRK08287 155 V 155 (187)
T ss_pred E
Confidence 3
No 58
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.56 E-value=3.1e-13 Score=145.76 Aligned_cols=182 Identities=13% Similarity=0.122 Sum_probs=123.7
Q ss_pred CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCE
Q psy2395 374 SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPI 453 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v 453 (570)
.+.+.....+..++-.++. ..++.+|||+|||+|..++.++...+ +.+|+|+|+|+.+++.+++|+..+ +.++
T Consensus 223 ~G~~~iQd~~s~~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~----g~~~ 295 (427)
T PRK10901 223 EGWVSVQDAAAQLAATLLA--PQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRL----GLKA 295 (427)
T ss_pred CceEEEECHHHHHHHHHcC--CCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHc----CCCe
Confidence 3444444444444333332 34678999999999999999998875 379999999999999999999874 4457
Q ss_pred EEEEccccccccc-CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCC----hHHHHHHHHHHhhccccCeEE
Q psy2395 454 KFIKSNWYNNLQN-YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNG----LSSIKEIVKNASKYLVKNGLL 528 (570)
Q Consensus 454 ~~~~~D~~~~l~~-~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~g----l~~~~~~l~~~~~~LkpgG~l 528 (570)
+++++|+.+.... ..++||.|++|||+....... ..|...+...... ......++..+.++|+|||++
T Consensus 296 ~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~-------~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~l 368 (427)
T PRK10901 296 TVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIR-------RHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTL 368 (427)
T ss_pred EEEEcCcccchhhcccCCCCEEEECCCCCcccccc-------cCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 8999999653221 136799999999987543221 1222221111111 134568999999999999999
Q ss_pred EEEEc----CCCHHHHHHHHHHC-CCeeE----------EEEecCCCCceEEEEEe
Q psy2395 529 LIEHG----YNQSNLVRKLLFKY-GFSDI----------KSWRDLSGIERVTQGKI 569 (570)
Q Consensus 529 ~~~~~----~~~~~~l~~ll~~~-Gf~~i----------~~~~D~~g~~R~~~~~~ 569 (570)
++.+. ..+...+..+++++ +|..+ .++++..+.+-|+++++
T Consensus 369 vystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l 424 (427)
T PRK10901 369 LYATCSILPEENEQQIKAFLARHPDAELLDTGTPQQPGRQLLPGEEDGDGFFYALL 424 (427)
T ss_pred EEEeCCCChhhCHHHHHHHHHhCCCCEEecCCCCCCCceEECCCCCCCCCeEEEEE
Confidence 88653 34556677777765 46533 34566667788888764
No 59
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.56 E-value=1.6e-13 Score=139.47 Aligned_cols=160 Identities=24% Similarity=0.321 Sum_probs=115.8
Q ss_pred eeeeecCCccccc---hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 368 LVLNITSDVLIPR---PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 368 ~~~~v~~~~~~pr---~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
..+.++|+.-+=. |.|...++++... ..++.+|||+|||||.++++.++.+ ..+|+|+|++|.+++.|++|+..
T Consensus 130 ~~I~idPg~AFGTG~H~TT~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klG--A~~v~a~DiDp~Av~~a~~N~~~ 206 (295)
T PF06325_consen 130 IVIEIDPGMAFGTGHHPTTRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLG--AKKVVAIDIDPLAVEAARENAEL 206 (295)
T ss_dssp EEEEESTTSSS-SSHCHHHHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTT--BSEEEEEESSCHHHHHHHHHHHH
T ss_pred EEEEECCCCcccCCCCHHHHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHH
Confidence 4566777644433 7888888887665 4567899999999999999999887 46899999999999999999998
Q ss_pred hcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcccc
Q psy2395 445 KLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVK 524 (570)
Q Consensus 445 ~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkp 524 (570)
|+. ..++.+. .. .... .++||+|++|-- .+.+..++..+.++|+|
T Consensus 207 N~~--~~~~~v~--~~-~~~~--~~~~dlvvANI~----------------------------~~vL~~l~~~~~~~l~~ 251 (295)
T PF06325_consen 207 NGV--EDRIEVS--LS-EDLV--EGKFDLVVANIL----------------------------ADVLLELAPDIASLLKP 251 (295)
T ss_dssp TT---TTCEEES--CT-SCTC--CS-EEEEEEES-----------------------------HHHHHHHHHHCHHHEEE
T ss_pred cCC--CeeEEEE--Ee-cccc--cccCCEEEECCC----------------------------HHHHHHHHHHHHHhhCC
Confidence 753 3345442 11 1112 378999999852 13457788888999999
Q ss_pred CeEEEE-EEcCCCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEE
Q psy2395 525 NGLLLI-EHGYNQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGK 568 (570)
Q Consensus 525 gG~l~~-~~~~~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~ 568 (570)
||++++ .+-..+.+.+.+.+++ ||..++...+ |.--.+.++
T Consensus 252 ~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~--~~W~~l~~~ 293 (295)
T PF06325_consen 252 GGYLILSGILEEQEDEVIEAYKQ-GFELVEEREE--GEWVALVFK 293 (295)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEE--TTEEEEEEE
T ss_pred CCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEE--CCEEEEEEE
Confidence 999988 3456788889999976 9998766543 444444443
No 60
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.56 E-value=1.6e-13 Score=128.12 Aligned_cols=147 Identities=18% Similarity=0.174 Sum_probs=113.2
Q ss_pred eecCCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCC
Q psy2395 371 NITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYN 450 (570)
Q Consensus 371 ~v~~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~ 450 (570)
..++++-+..++-+.+.-..+. +.++.++||+|||||.+++.++..+| ..+|||+|-++++++..++|+.+.+ -
T Consensus 10 ~~~~~~p~TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg---~ 83 (187)
T COG2242 10 ERDEGGPMTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFG---V 83 (187)
T ss_pred ccCCCCCCcHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhC---C
Confidence 3344444444555555443333 46788999999999999999997665 7999999999999999999999853 3
Q ss_pred CCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 451 IPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 451 ~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
.++.++.+|+.+.++... +||.||.. |. ..+..+++.+..+|+|||++++
T Consensus 84 ~n~~vv~g~Ap~~L~~~~-~~daiFIG--------------------------Gg---~~i~~ile~~~~~l~~ggrlV~ 133 (187)
T COG2242 84 DNLEVVEGDAPEALPDLP-SPDAIFIG--------------------------GG---GNIEEILEAAWERLKPGGRLVA 133 (187)
T ss_pred CcEEEEeccchHhhcCCC-CCCEEEEC--------------------------CC---CCHHHHHHHHHHHcCcCCeEEE
Confidence 469999999988777543 79999883 22 3457899999999999999998
Q ss_pred EE-cCCCHHHHHHHHHHCCC-eeEE
Q psy2395 531 EH-GYNQSNLVRKLLFKYGF-SDIK 553 (570)
Q Consensus 531 ~~-~~~~~~~l~~ll~~~Gf-~~i~ 553 (570)
-. .........+.+++.|| +.++
T Consensus 134 naitlE~~~~a~~~~~~~g~~ei~~ 158 (187)
T COG2242 134 NAITLETLAKALEALEQLGGREIVQ 158 (187)
T ss_pred EeecHHHHHHHHHHHHHcCCceEEE
Confidence 43 45667778888999999 4443
No 61
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.54 E-value=4.5e-13 Score=134.41 Aligned_cols=147 Identities=22% Similarity=0.282 Sum_probs=107.8
Q ss_pred eeeecCCccccc---hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy2395 369 VLNITSDVLIPR---PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKK 445 (570)
Q Consensus 369 ~~~v~~~~~~pr---~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~ 445 (570)
.+.++|+.-... +.|..+++.+... ..++.+|||+|||+|.+++.+++.+. .+|+|+|+|+.+++.|++|+..+
T Consensus 89 ~i~i~p~~afgtg~h~tt~~~l~~l~~~-~~~~~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~~ 165 (250)
T PRK00517 89 NIELDPGMAFGTGTHPTTRLCLEALEKL-VLPGKTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAELN 165 (250)
T ss_pred EEEECCCCccCCCCCHHHHHHHHHHHhh-cCCCCEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHc
Confidence 345555533322 5677777766543 34678999999999999998887653 47999999999999999999875
Q ss_pred cccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccC
Q psy2395 446 LTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKN 525 (570)
Q Consensus 446 ~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkpg 525 (570)
+. ...+.+..+| .+||+|++|... +.+..+++.+.++|+||
T Consensus 166 ~~--~~~~~~~~~~---------~~fD~Vvani~~----------------------------~~~~~l~~~~~~~Lkpg 206 (250)
T PRK00517 166 GV--ELNVYLPQGD---------LKADVIVANILA----------------------------NPLLELAPDLARLLKPG 206 (250)
T ss_pred CC--CceEEEccCC---------CCcCEEEEcCcH----------------------------HHHHHHHHHHHHhcCCC
Confidence 31 1223333332 269999998521 24567888999999999
Q ss_pred eEEEEE-EcCCCHHHHHHHHHHCCCeeEEEEec
Q psy2395 526 GLLLIE-HGYNQSNLVRKLLFKYGFSDIKSWRD 557 (570)
Q Consensus 526 G~l~~~-~~~~~~~~l~~ll~~~Gf~~i~~~~D 557 (570)
|++++. +...+.+.+.+.+.+.||..+....+
T Consensus 207 G~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~ 239 (250)
T PRK00517 207 GRLILSGILEEQADEVLEAYEEAGFTLDEVLER 239 (250)
T ss_pred cEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEe
Confidence 999885 34567788899999999998876653
No 62
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.53 E-value=2.7e-13 Score=143.92 Aligned_cols=154 Identities=20% Similarity=0.308 Sum_probs=108.2
Q ss_pred CeeeeecC------CccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 367 GLVLNITS------DVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 367 ~~~~~v~~------~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
|..|.++. +.|....+++.++..+ .++.+|||+|||||.+++.++..+ ..+|+++|+|+.+++.|++
T Consensus 189 g~~f~vdl~~g~ktG~flDqr~~R~~~~~~-----~~g~rVLDlfsgtG~~~l~aa~~g--a~~V~~VD~s~~al~~a~~ 261 (396)
T PRK15128 189 GMKLLVDIQGGHKTGYYLDQRDSRLATRRY-----VENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQ 261 (396)
T ss_pred CEEEEEecccccccCcChhhHHHHHHHHHh-----cCCCeEEEeccCCCHHHHHHHhCC--CCEEEEEECCHHHHHHHHH
Confidence 66777653 3454444455444433 246799999999999998877543 4699999999999999999
Q ss_pred HHHhhcccCC-CCEEEEEccccccccc---CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHH
Q psy2395 441 NAKKKLTKYN-IPIKFIKSNWYNNLQN---YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVK 516 (570)
Q Consensus 441 n~~~~~~~~~-~~v~~~~~D~~~~l~~---~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~ 516 (570)
|+..|+ .+ .+++++++|+++.+.. ..++||+||+||||+..... ++. .+...|..++.
T Consensus 262 N~~~Ng--l~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~-------------~l~---~~~~~y~~l~~ 323 (396)
T PRK15128 262 NVELNK--LDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKS-------------QLM---GACRGYKDINM 323 (396)
T ss_pred HHHHcC--CCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChH-------------HHH---HHHHHHHHHHH
Confidence 999864 22 3689999999886532 13589999999999754311 111 12345788889
Q ss_pred HHhhccccCeEEEEEEc--CCCHHHHHHHHH
Q psy2395 517 NASKYLVKNGLLLIEHG--YNQSNLVRKLLF 545 (570)
Q Consensus 517 ~~~~~LkpgG~l~~~~~--~~~~~~l~~ll~ 545 (570)
.+.++|+|||.+++... .-..+.+.+.+.
T Consensus 324 ~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~ 354 (396)
T PRK15128 324 LAIQLLNPGGILLTFSCSGLMTSDLFQKIIA 354 (396)
T ss_pred HHHHHcCCCeEEEEEeCCCcCCHHHHHHHHH
Confidence 99999999999886433 233444444443
No 63
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.53 E-value=3.2e-13 Score=139.93 Aligned_cols=149 Identities=18% Similarity=0.168 Sum_probs=110.5
Q ss_pred CCccccchhHHHHHHHHHhhc--CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCC
Q psy2395 374 SDVLIPRPETELLVDLIVKKT--FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNI 451 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~--~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~ 451 (570)
...+.|.+.++.+.+.++... ..++.+|||+|||+|.++..+++..+ ..+|+|+|+|+.+++.|+++... .
T Consensus 88 D~~~~~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~------~ 160 (340)
T PLN02490 88 DHIINPGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL------K 160 (340)
T ss_pred CCCeecCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc------c
Confidence 334456666676666555532 23567999999999999999988764 47999999999999999988642 2
Q ss_pred CEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 452 PIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 452 ~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
+++++.+|+.+ ++..+++||+|+++..+.... ....+++++.+.|+|||.+++.
T Consensus 161 ~i~~i~gD~e~-lp~~~~sFDvVIs~~~L~~~~-------------------------d~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 161 ECKIIEGDAED-LPFPTDYADRYVSAGSIEYWP-------------------------DPQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred CCeEEeccHHh-CCCCCCceeEEEEcChhhhCC-------------------------CHHHHHHHHHHhcCCCcEEEEE
Confidence 47889999855 343347899999976543211 1256889999999999998764
Q ss_pred Ec-----------------CCCHHHHHHHHHHCCCeeEEEE
Q psy2395 532 HG-----------------YNQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 532 ~~-----------------~~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
.+ ....+++.++++++||..+++.
T Consensus 215 ~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~ 255 (340)
T PLN02490 215 GPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLK 255 (340)
T ss_pred EecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEE
Confidence 21 1245778899999999998764
No 64
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.52 E-value=1.3e-13 Score=127.49 Aligned_cols=109 Identities=28% Similarity=0.423 Sum_probs=86.9
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc-CCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN-YKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~-~~~~fD~Iv 475 (570)
++.+|||+|||+|.++..++....++.+++|+|+|+.+++.|+++++.++ .. +++|+++|+.+ ++. ..++||+|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~--~~-ni~~~~~d~~~-l~~~~~~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG--LD-NIEFIQGDIED-LPQELEEKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT--ST-TEEEEESBTTC-GCGCSSTTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc--cc-ccceEEeehhc-cccccCCCeeEEE
Confidence 56799999999999999999543336899999999999999999998742 22 69999999988 542 126899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
+++++... .....+++.+.+.|+++|.+++....
T Consensus 79 ~~~~l~~~-------------------------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHF-------------------------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGT-------------------------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhc-------------------------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 98776322 13467899999999999999886654
No 65
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.52 E-value=1.7e-13 Score=137.90 Aligned_cols=133 Identities=19% Similarity=0.203 Sum_probs=99.8
Q ss_pred HhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCc
Q psy2395 391 VKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKL 470 (570)
Q Consensus 391 ~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~ 470 (570)
+..+..++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++...+ ...+++++++|+.+..+...++
T Consensus 38 l~~l~~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g--~~~~v~~~~~d~~~l~~~~~~~ 112 (255)
T PRK11036 38 LAELPPRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKG--VSDNMQFIHCAAQDIAQHLETP 112 (255)
T ss_pred HHhcCCCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC--CccceEEEEcCHHHHhhhcCCC
Confidence 33334566799999999999999999753 689999999999999999987642 2346899999996643333478
Q ss_pred eeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC----------------
Q psy2395 471 FNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY---------------- 534 (570)
Q Consensus 471 fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~---------------- 534 (570)
||+|+++..+... .....+++.+.++|+|||++++.+..
T Consensus 113 fD~V~~~~vl~~~-------------------------~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~ 167 (255)
T PRK11036 113 VDLILFHAVLEWV-------------------------ADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDY 167 (255)
T ss_pred CCEEEehhHHHhh-------------------------CCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHH
Confidence 9999997543211 11257888999999999999764311
Q ss_pred ------------------CCHHHHHHHHHHCCCeeEE
Q psy2395 535 ------------------NQSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 535 ------------------~~~~~l~~ll~~~Gf~~i~ 553 (570)
...+.+.++++++||..+.
T Consensus 168 ~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~ 204 (255)
T PRK11036 168 VQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQIMG 204 (255)
T ss_pred HHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeEee
Confidence 1246788999999998763
No 66
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.52 E-value=3.7e-13 Score=137.70 Aligned_cols=152 Identities=20% Similarity=0.245 Sum_probs=112.5
Q ss_pred eeeeecCCccccc---hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 368 LVLNITSDVLIPR---PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 368 ~~~~v~~~~~~pr---~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
..+.++|+.-+.. |.|....+++... ..++.+|||+|||+|.+++.+++.+ ..+|+|+|+|+.+++.|++|+..
T Consensus 128 ~~i~ldpg~aFgtG~h~tt~l~l~~l~~~-~~~g~~VLDvGcGsG~lai~aa~~g--~~~V~avDid~~al~~a~~n~~~ 204 (288)
T TIGR00406 128 LIIMLDPGLAFGTGTHPTTSLCLEWLEDL-DLKDKNVIDVGCGSGILSIAALKLG--AAKVVGIDIDPLAVESARKNAEL 204 (288)
T ss_pred EEEEECCCCcccCCCCHHHHHHHHHHHhh-cCCCCEEEEeCCChhHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHH
Confidence 4566677765433 5666666655443 3467899999999999999988764 36899999999999999999987
Q ss_pred hcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcccc
Q psy2395 445 KLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVK 524 (570)
Q Consensus 445 ~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkp 524 (570)
++ ...++.+..+|... ...++||+|++|+.. ..+..++..+.+.|+|
T Consensus 205 n~--~~~~~~~~~~~~~~---~~~~~fDlVvan~~~----------------------------~~l~~ll~~~~~~Lkp 251 (288)
T TIGR00406 205 NQ--VSDRLQVKLIYLEQ---PIEGKADVIVANILA----------------------------EVIKELYPQFSRLVKP 251 (288)
T ss_pred cC--CCcceEEEeccccc---ccCCCceEEEEecCH----------------------------HHHHHHHHHHHHHcCC
Confidence 53 23356777776422 123689999998631 2346788899999999
Q ss_pred CeEEEE-EEcCCCHHHHHHHHHHCCCeeEEEEe
Q psy2395 525 NGLLLI-EHGYNQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 525 gG~l~~-~~~~~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
||++++ .+...+...+.+.+.+. |..+++..
T Consensus 252 gG~li~sgi~~~~~~~v~~~~~~~-f~~~~~~~ 283 (288)
T TIGR00406 252 GGWLILSGILETQAQSVCDAYEQG-FTVVEIRQ 283 (288)
T ss_pred CcEEEEEeCcHhHHHHHHHHHHcc-CceeeEec
Confidence 999987 44567788888888876 88776544
No 67
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.52 E-value=3e-13 Score=131.62 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=106.5
Q ss_pred hhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHHHHh
Q psy2395 313 NILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVK 392 (570)
Q Consensus 313 ~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~ 392 (570)
+.++.++..++|+.|++.......+ .+..+.+..+..+..| .++..+++
T Consensus 18 ~~v~~a~~~vpR~~fv~~~~~~~ay----------------------------~d~~~~~~~~~~~~~p---~~~~~~~~ 66 (205)
T PRK13944 18 ERVKKAMLSVPREEFVMPEYRMMAY----------------------------EDRPLPLFAGATISAP---HMVAMMCE 66 (205)
T ss_pred HHHHHHHHhCCHhHcCChhHHhcCc----------------------------cCCCcccCCCCEechH---HHHHHHHH
Confidence 5688899999999998743322211 1122222222222222 22333333
Q ss_pred hc-CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCce
Q psy2395 393 KT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLF 471 (570)
Q Consensus 393 ~~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f 471 (570)
.+ ..++.+|||+|||+|+++..+++..+...+|+|+|+++.+++.|++|+..++ ...+++++.+|+.+.++. ..+|
T Consensus 67 ~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~--~~~~v~~~~~d~~~~~~~-~~~f 143 (205)
T PRK13944 67 LIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG--YWGVVEVYHGDGKRGLEK-HAPF 143 (205)
T ss_pred hcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEECCcccCCcc-CCCc
Confidence 32 2467899999999999999999876445799999999999999999998642 223589999999765543 4689
Q ss_pred eEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 472 D~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
|+|+++.+.. .+.+.+.+.|+|||++++.++.
T Consensus 144 D~Ii~~~~~~-------------------------------~~~~~l~~~L~~gG~lvi~~~~ 175 (205)
T PRK13944 144 DAIIVTAAAS-------------------------------TIPSALVRQLKDGGVLVIPVEE 175 (205)
T ss_pred cEEEEccCcc-------------------------------hhhHHHHHhcCcCcEEEEEEcC
Confidence 9999975421 1223566789999999886654
No 68
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.52 E-value=4e-13 Score=142.34 Aligned_cols=154 Identities=14% Similarity=0.069 Sum_probs=112.4
Q ss_pred ccCeeeeecCCccccc--hhHHHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 365 FYGLVLNITSDVLIPR--PETELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 365 f~~~~~~v~~~~~~pr--~~t~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
+.+..|.++|+.|.+. ...+.+...+...+. .++.+|||+|||+|.+++.++.. +.+|+|+|+|+.+++.|++|
T Consensus 198 ~~g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N 274 (374)
T TIGR02085 198 FNDVPLVIRPQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQS 274 (374)
T ss_pred ECCEEEEECCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHH
Confidence 4567889999999876 455666666655432 24579999999999999999954 36899999999999999999
Q ss_pred HHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhc
Q psy2395 442 AKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKY 521 (570)
Q Consensus 442 ~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~ 521 (570)
++.++. .+++|+++|+.+.+.....+||+|++||||-.. ...+++.+. .
T Consensus 275 ~~~~~~---~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~---------------------------~~~~l~~l~-~ 323 (374)
T TIGR02085 275 AQMLGL---DNLSFAALDSAKFATAQMSAPELVLVNPPRRGI---------------------------GKELCDYLS-Q 323 (374)
T ss_pred HHHcCC---CcEEEEECCHHHHHHhcCCCCCEEEECCCCCCC---------------------------cHHHHHHHH-h
Confidence 987532 269999999966543222469999999997411 133444443 3
Q ss_pred cccCeEEEEEEcCCCHHHHHHHHHHCCCeeEEE
Q psy2395 522 LVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKS 554 (570)
Q Consensus 522 LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~ 554 (570)
++|++++++++.+.....-...| .||+...+
T Consensus 324 ~~p~~ivyvsc~p~TlaRDl~~L--~gy~l~~~ 354 (374)
T TIGR02085 324 MAPKFILYSSCNAQTMAKDIAEL--SGYQIERV 354 (374)
T ss_pred cCCCeEEEEEeCHHHHHHHHHHh--cCceEEEE
Confidence 79999999998765544444445 68876544
No 69
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.50 E-value=6.2e-13 Score=143.89 Aligned_cols=155 Identities=13% Similarity=0.180 Sum_probs=116.3
Q ss_pred cCeeeeecCCccccc--hhHHHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHH
Q psy2395 366 YGLVLNITSDVLIPR--PETELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNA 442 (570)
Q Consensus 366 ~~~~~~v~~~~~~pr--~~t~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~ 442 (570)
.+..|.++++.|.+. ..++.+++.+..... .++.+|||+|||+|.+++.+++.. .+|+|+|+|+.+++.|++|+
T Consensus 258 ~~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~ 334 (431)
T TIGR00479 258 GDLSFSLSARDFFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNA 334 (431)
T ss_pred CCEEEEECCCceeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHH
Confidence 478899999999865 466777777766543 455799999999999999999764 58999999999999999999
Q ss_pred HhhcccCCCCEEEEEccccccccc---CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHh
Q psy2395 443 KKKLTKYNIPIKFIKSNWYNNLQN---YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNAS 519 (570)
Q Consensus 443 ~~~~~~~~~~v~~~~~D~~~~l~~---~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~ 519 (570)
..++. .+++|+.+|+.+.++. ...+||+|++|||+... ...+++.+.
T Consensus 335 ~~~~~---~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~---------------------------~~~~l~~l~ 384 (431)
T TIGR00479 335 ELNGI---ANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKGC---------------------------AAEVLRTII 384 (431)
T ss_pred HHhCC---CceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCCC---------------------------CHHHHHHHH
Confidence 87532 3699999999664332 13579999999996411 134444433
Q ss_pred hccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEEE
Q psy2395 520 KYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKS 554 (570)
Q Consensus 520 ~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~ 554 (570)
.++|++.+++.+.+.....-...|.+.||....+
T Consensus 385 -~l~~~~ivyvsc~p~tlard~~~l~~~gy~~~~~ 418 (431)
T TIGR00479 385 -ELKPERIVYVSCNPATLARDLEFLCKEGYGITWV 418 (431)
T ss_pred -hcCCCEEEEEcCCHHHHHHHHHHHHHCCeeEEEE
Confidence 3889998888776655555566677788876544
No 70
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.50 E-value=7.7e-13 Score=128.01 Aligned_cols=125 Identities=22% Similarity=0.283 Sum_probs=99.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.+++.+++..++..+|+++|+++.+++.|++|+..++ ...++.++.+|+.+.++...+.||+|+
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g--~~~~v~~~~~d~~~~l~~~~~~~D~V~ 116 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG--VLNNIVLIKGEAPEILFTINEKFDRIF 116 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC--CCCCeEEEEechhhhHhhcCCCCCEEE
Confidence 567899999999999999998765445799999999999999999998752 134689999998765444346899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-cCCCHHHHHHHHHHCCCe
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-GYNQSNLVRKLLFKYGFS 550 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~l~~ll~~~Gf~ 550 (570)
++.. ...+..+++.+.+.|+|||.+++.. ...+...+...+++.||.
T Consensus 117 ~~~~----------------------------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 117 IGGG----------------------------SEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFN 164 (198)
T ss_pred ECCC----------------------------cccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCC
Confidence 9642 1134678889999999999998744 345667888889999984
No 71
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.49 E-value=1.3e-12 Score=132.09 Aligned_cols=161 Identities=19% Similarity=0.205 Sum_probs=108.5
Q ss_pred CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCE
Q psy2395 374 SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPI 453 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v 453 (570)
.+.+.+...+..++..++. +.++.+|||+|||+|..++.++....+...|+|+|+++.+++.+++|+..++. .++
T Consensus 50 ~G~~~~qd~~s~~~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~---~~v 124 (264)
T TIGR00446 50 SGLYYIQEASSMIPPLALE--PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV---LNV 124 (264)
T ss_pred CCeEEEECHHHHHHHHHhC--CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC---CcE
Confidence 3444455445555544443 35678999999999999999988765456999999999999999999997532 258
Q ss_pred EEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCCh----HHHHHHHHHHhhccccCeEEE
Q psy2395 454 KFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGL----SSIKEIVKNASKYLVKNGLLL 529 (570)
Q Consensus 454 ~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl----~~~~~~l~~~~~~LkpgG~l~ 529 (570)
.++++|+... ....++||+|++|||+..... ++..|...+......+ .....++..+.++|+|||+++
T Consensus 125 ~~~~~D~~~~-~~~~~~fD~Vl~D~Pcsg~G~-------~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lv 196 (264)
T TIGR00446 125 AVTNFDGRVF-GAAVPKFDAILLDAPCSGEGV-------IRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLV 196 (264)
T ss_pred EEecCCHHHh-hhhccCCCEEEEcCCCCCCcc-------cccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 9999998543 222357999999999864332 2233332221111111 234679999999999999998
Q ss_pred EEEcCCC----HHHHHHHHHHC
Q psy2395 530 IEHGYNQ----SNLVRKLLFKY 547 (570)
Q Consensus 530 ~~~~~~~----~~~l~~ll~~~ 547 (570)
+.+..-. ...+..+++.+
T Consensus 197 Ystcs~~~~Ene~vv~~~l~~~ 218 (264)
T TIGR00446 197 YSTCSLEPEENEAVVDYLLEKR 218 (264)
T ss_pred EEeCCCChHHHHHHHHHHHHhC
Confidence 8654322 33445555553
No 72
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.49 E-value=4.9e-13 Score=129.77 Aligned_cols=136 Identities=14% Similarity=0.086 Sum_probs=100.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc--cCCCceeE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ--NYKKLFNI 473 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~--~~~~~fD~ 473 (570)
.++.+|||+|||+|.++..+++..+ ..+|+|+|+|+.+++.|++++..++ -.++.++++|+.+.++ ..+++||+
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~---~~~v~~~~~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEG---LTNLRLLCGDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcC---CCCEEEEecCHHHHHHHHcCccccce
Confidence 3567999999999999999998775 5799999999999999999998642 1369999999833333 23468999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-CCHHHHHHHHHHCCCeeE
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-NQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~l~~ll~~~Gf~~i 552 (570)
|++|.|....... .......+..+++.+.++|+|||.+++.+.. .....+.+.+.+.|+...
T Consensus 115 V~~~~~~p~~~~~-----------------~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 115 IYLNFPDPWPKKR-----------------HHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred EEEECCCCCCCcc-----------------ccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc
Confidence 9998542111000 0000112468899999999999999987654 456678888999998643
No 73
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.49 E-value=9.2e-13 Score=136.59 Aligned_cols=155 Identities=15% Similarity=0.128 Sum_probs=110.6
Q ss_pred ccCeeeeecCCccccc--hhHHHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 365 FYGLVLNITSDVLIPR--PETELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 365 f~~~~~~v~~~~~~pr--~~t~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
+.+..|.+.++.|.+. ..++.+++.+..++. .++.+|||+|||+|.+++.++.. +.+|+|+|+|+.+++.|++|
T Consensus 138 ~~~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n 214 (315)
T PRK03522 138 FNGVPLFIRPQSFFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQS 214 (315)
T ss_pred ECCEEEEECCCeeeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHH
Confidence 3467788899999876 345667666655532 24679999999999999999974 36899999999999999999
Q ss_pred HHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhc
Q psy2395 442 AKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKY 521 (570)
Q Consensus 442 ~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~ 521 (570)
+..++. .+++|+++|+.+......++||+|++|||+.-.. ..+++.+ ..
T Consensus 215 ~~~~~l---~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G~~---------------------------~~~~~~l-~~ 263 (315)
T PRK03522 215 AAELGL---TNVQFQALDSTQFATAQGEVPDLVLVNPPRRGIG---------------------------KELCDYL-SQ 263 (315)
T ss_pred HHHcCC---CceEEEEcCHHHHHHhcCCCCeEEEECCCCCCcc---------------------------HHHHHHH-HH
Confidence 987532 3699999999764432335799999999953110 2222222 23
Q ss_pred cccCeEEEEEEcCCCHHHHHHHHHHCCCeeEEEE
Q psy2395 522 LVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 522 LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
+.|++.+++.+.+.....-.+.| .||...++.
T Consensus 264 ~~~~~ivyvsc~p~t~~rd~~~l--~~y~~~~~~ 295 (315)
T PRK03522 264 MAPRFILYSSCNAQTMAKDLAHL--PGYRIERVQ 295 (315)
T ss_pred cCCCeEEEEECCcccchhHHhhc--cCcEEEEEE
Confidence 67889889888765544333444 588765543
No 74
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.49 E-value=6e-13 Score=130.43 Aligned_cols=104 Identities=18% Similarity=0.159 Sum_probs=82.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|+++..+++..+...+|+|+|+++.+++.|++|+..++ -.+++++++|+.+.... ..+||+|+
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g---~~~v~~~~~d~~~~~~~-~~~fD~Ii 151 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG---LDNVIVIVGDGTQGWEP-LAPYDRIY 151 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC---CCCeEEEECCcccCCcc-cCCCCEEE
Confidence 567899999999999999999886545689999999999999999998753 13699999999765432 36899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
++++.. .+...+.+.|+|||++++.++.
T Consensus 152 ~~~~~~-------------------------------~~~~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 152 VTAAGP-------------------------------KIPEALIDQLKEGGILVMPVGE 179 (215)
T ss_pred EcCCcc-------------------------------cccHHHHHhcCcCcEEEEEEcC
Confidence 986421 1123456689999999987654
No 75
>PLN02244 tocopherol O-methyltransferase
Probab=99.49 E-value=1.2e-12 Score=137.08 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=99.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++.+ +++|+|+|+|+.+++.|++++..++ ...+++|+++|+.+ ++..+++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g--~~~~v~~~~~D~~~-~~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQG--LSDKVSFQVADALN-QPFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEcCccc-CCCCCCCccEEE
Confidence 356799999999999999999876 4799999999999999999987642 23469999999865 444457999999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC---------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------------------- 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------------------- 534 (570)
++-.+... .....+++++.++|+|||.+++....
T Consensus 192 s~~~~~h~-------------------------~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~ 246 (340)
T PLN02244 192 SMESGEHM-------------------------PDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDK 246 (340)
T ss_pred ECCchhcc-------------------------CCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHH
Confidence 96432211 12367889999999999999874310
Q ss_pred ----------CCHHHHHHHHHHCCCeeEEEE
Q psy2395 535 ----------NQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 535 ----------~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
...+.+.++++++||..+++.
T Consensus 247 i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~ 277 (340)
T PLN02244 247 ICAAYYLPAWCSTSDYVKLAESLGLQDIKTE 277 (340)
T ss_pred HHhhccCCCCCCHHHHHHHHHHCCCCeeEee
Confidence 024567788999999988653
No 76
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.48 E-value=1.3e-12 Score=141.76 Aligned_cols=166 Identities=16% Similarity=0.139 Sum_probs=114.6
Q ss_pred ecCCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCC
Q psy2395 372 ITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNI 451 (570)
Q Consensus 372 v~~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~ 451 (570)
+.++.+.....+..++..++. ..++.+|||+|||+|..+..++.......+|+|+|+|+.+++.+++|+..++. .
T Consensus 227 ~~~G~~~vqd~~s~l~~~~l~--~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---~ 301 (445)
T PRK14904 227 LKLGLVSVQNPTQALACLLLN--PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI---T 301 (445)
T ss_pred HhCcEEEEeCHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC---C
Confidence 346666666555555544443 34678999999999999999987654457999999999999999999987532 2
Q ss_pred CEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCCh----HHHHHHHHHHhhccccCeE
Q psy2395 452 PIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGL----SSIKEIVKNASKYLVKNGL 527 (570)
Q Consensus 452 ~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl----~~~~~~l~~~~~~LkpgG~ 527 (570)
+++++++|+.+..+ ..+||+|++|||+....... ..|...+......+ .....++..+.++|+|||+
T Consensus 302 ~v~~~~~Da~~~~~--~~~fD~Vl~D~Pcsg~g~~~-------r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~ 372 (445)
T PRK14904 302 IIETIEGDARSFSP--EEQPDAILLDAPCTGTGVLG-------RRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGV 372 (445)
T ss_pred eEEEEeCccccccc--CCCCCEEEEcCCCCCcchhh-------cCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 58999999966432 36899999999986543221 12222111111111 2345799999999999999
Q ss_pred EEEEEcC----CCHHHHHHHHHHC-CCee
Q psy2395 528 LLIEHGY----NQSNLVRKLLFKY-GFSD 551 (570)
Q Consensus 528 l~~~~~~----~~~~~l~~ll~~~-Gf~~ 551 (570)
+++.+.. .+...+..+++.+ +|..
T Consensus 373 lvystcs~~~~Ene~~v~~~l~~~~~~~~ 401 (445)
T PRK14904 373 LVYATCSIEPEENELQIEAFLQRHPEFSA 401 (445)
T ss_pred EEEEeCCCChhhHHHHHHHHHHhCCCCEE
Confidence 9986643 3445567777766 4654
No 77
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.47 E-value=7.3e-13 Score=127.76 Aligned_cols=143 Identities=17% Similarity=0.157 Sum_probs=104.6
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc--cCCCceeEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ--NYKKLFNII 474 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~--~~~~~fD~I 474 (570)
.+.+|||+|||+|.++..+++..+ ..+|+|+|+++.+++.|++++...+ . .++.++++|+.+... ..++.||.|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~--l-~ni~~i~~d~~~~~~~~~~~~~~d~v 91 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLG--L-KNLHVLCGDANELLDKFFPDGSLSKV 91 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhC--C-CCEEEEccCHHHHHHhhCCCCceeEE
Confidence 456999999999999999999876 6899999999999999999988642 1 269999999976432 123589999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC-CHHHHHHHHHHCC-CeeE
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN-QSNLVRKLLFKYG-FSDI 552 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~l~~ll~~~G-f~~i 552 (570)
++|+|-..... ++.++.. ....+++.+.++|+|||.+++.+... ....+.+.+...+ |..+
T Consensus 92 ~~~~pdpw~k~--------~h~~~r~---------~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 92 FLNFPDPWPKK--------RHNKRRI---------TQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENT 154 (194)
T ss_pred EEECCCcCCCC--------Ccccccc---------CCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEec
Confidence 99965211110 1111110 12678999999999999999887654 3666777777776 8776
Q ss_pred EEEecCCC
Q psy2395 553 KSWRDLSG 560 (570)
Q Consensus 553 ~~~~D~~g 560 (570)
....|+.+
T Consensus 155 ~~~~~~~~ 162 (194)
T TIGR00091 155 SKSTDLNN 162 (194)
T ss_pred ccccccCC
Confidence 65555544
No 78
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=99.47 E-value=2.1e-12 Score=130.37 Aligned_cols=202 Identities=21% Similarity=0.254 Sum_probs=108.6
Q ss_pred ccCeee-eecCCccccc-hhHHHHHHHHHhhcCC------CCCEEEEECCcccHHH-HHHHHhcCCCcEEEEEeCCHHHH
Q psy2395 365 FYGLVL-NITSDVLIPR-PETELLVDLIVKKTFE------KKIKLLEMGTGSGAIA-IAIAIYSKNKIEIIATDISKFAL 435 (570)
Q Consensus 365 f~~~~~-~v~~~~~~pr-~~t~~l~~~~~~~~~~------~~~~VLDlGcGtG~i~-l~la~~~~~~~~V~gvDis~~al 435 (570)
+|++.+ .++++.++|. |..-..+.++.+.+.. ...++||||||..++- +..++.+ +++++|+||++.++
T Consensus 62 dfgl~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl 139 (299)
T PF05971_consen 62 DFGLDVWDIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSL 139 (299)
T ss_dssp HH--------TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHH
T ss_pred hcCCccccCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHH
Confidence 346655 7889999999 5555566666554431 2468999999998884 4445554 69999999999999
Q ss_pred HHHHHHHHhh-cccCCCCEEEEEc----ccccccccCCCceeEEEECCCCCCCCCcccCCCCcc-----------ccccc
Q psy2395 436 KIAKKNAKKK-LTKYNIPIKFIKS----NWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLR-----------FEPIN 499 (570)
Q Consensus 436 ~~A~~n~~~~-~~~~~~~v~~~~~----D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~-----------~ep~~ 499 (570)
+.|++|+..| . +..+|+++.. +++..+....+.||+.+|||||+...+........+ -.|..
T Consensus 140 ~~A~~nv~~N~~--L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~ 217 (299)
T PF05971_consen 140 ESARENVERNPN--LESRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKL 217 (299)
T ss_dssp HHHHHHHHHT-T---TTTEEEEE--ST-SSTTTSTT--S-EEEEEE-----SS---------------------------
T ss_pred HHHHHHHHhccc--cccceEEEEcCCccccchhhhcccceeeEEecCCccccChhhhcccccccccccccccccccCccc
Confidence 9999999986 4 3446777654 345545444468999999999998765432211111 14555
Q ss_pred cccccCC-------ChHHHHHHHHHHhhccccCeEEEEEEc-CCCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEEeC
Q psy2395 500 ALTDYSN-------GLSSIKEIVKNASKYLVKNGLLLIEHG-YNQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGKIS 570 (570)
Q Consensus 500 al~~~~~-------gl~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~~ 570 (570)
++.|... ...|+.++++++..+=..-.|+---+| ......+.+.|++.|-..+.+..-.+|...-.+--||
T Consensus 218 ~~~G~~~El~~~GGEv~FV~rMI~ES~~~~~~v~WfTsmvgKkssL~~l~~~L~~~~~~~~~~~e~~QG~t~rw~lAWs 296 (299)
T PF05971_consen 218 NFTGQSNELWCEGGEVAFVKRMIKESLQLKDQVRWFTSMVGKKSSLKPLKKELKKLGATNYKVTEMCQGQTKRWILAWS 296 (299)
T ss_dssp -----TTTTHHHHTHHHHHHHHHHHHHHHGGGEEEEEEEESSGGGHHHHHHHHHHTT-SEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCCcceEEcCCccHHHHHHHHHHHHHhCCCcEEEeecccCcccHHHHHHHHHhcCCceEEEEEccCCceEEEEEEEe
Confidence 5544322 357899999998866544444433444 4678899999999998887777766777655554453
No 79
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.47 E-value=9.4e-13 Score=128.74 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=104.9
Q ss_pred hhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHH-HHHHHHH
Q psy2395 313 NILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETE-LLVDLIV 391 (570)
Q Consensus 313 ~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~-~l~~~~~ 391 (570)
+.++.++..++|+.|++.......+. ..|+ .++.+..+..|... .+++.+
T Consensus 22 ~~v~~a~~~v~R~~fvp~~~~~~ay~--------------d~~~--------------~~~~g~~~~~p~~~~~~~~~l- 72 (212)
T PRK13942 22 KKVIDALLKVPRHLFVPEYLEEYAYV--------------DTPL--------------EIGYGQTISAIHMVAIMCELL- 72 (212)
T ss_pred HHHHHHHHcCCHhhcCCchhhhcCcC--------------CCCc--------------cCCCCCEeCcHHHHHHHHHHc-
Confidence 56888899999999986433222111 1222 22223223333222 222222
Q ss_pred hhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCce
Q psy2395 392 KKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLF 471 (570)
Q Consensus 392 ~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f 471 (570)
...++.+|||+|||||+++..+++......+|+|+|+++.+++.|++|+..++ -.+++++++|+...... ..+|
T Consensus 73 --~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g---~~~v~~~~gd~~~~~~~-~~~f 146 (212)
T PRK13942 73 --DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG---YDNVEVIVGDGTLGYEE-NAPY 146 (212)
T ss_pred --CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEECCcccCCCc-CCCc
Confidence 23567899999999999999999876445799999999999999999998642 23699999998765432 3689
Q ss_pred eEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 472 D~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
|+|+++-.. ..+...+.+.|+|||++++..+.
T Consensus 147 D~I~~~~~~-------------------------------~~~~~~l~~~LkpgG~lvi~~~~ 178 (212)
T PRK13942 147 DRIYVTAAG-------------------------------PDIPKPLIEQLKDGGIMVIPVGS 178 (212)
T ss_pred CEEEECCCc-------------------------------ccchHHHHHhhCCCcEEEEEEcC
Confidence 999985211 11223455689999999987654
No 80
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.46 E-value=2.6e-12 Score=138.96 Aligned_cols=165 Identities=17% Similarity=0.185 Sum_probs=116.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---cCCCce
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---NYKKLF 471 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---~~~~~f 471 (570)
..++.+|||+|||+|..+..++....+.++|+|+|+++.+++.+++|+..++. .++.++++|+.+... ...++|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~---~~v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL---KSIKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC---CeEEEEeCChhhcccccccccccC
Confidence 34678999999999999999998764457999999999999999999997532 258999999865431 223689
Q ss_pred eEEEECCCCCCCCCcccCCCCccccccccccccCCC----hHHHHHHHHHHhhccccCeEEEEEEcC----CCHHHHHHH
Q psy2395 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNG----LSSIKEIVKNASKYLVKNGLLLIEHGY----NQSNLVRKL 543 (570)
Q Consensus 472 D~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~g----l~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~l~~l 543 (570)
|.|++|||....... +..|...+...... ......++..+.++|||||++++.+.. .+...+..+
T Consensus 327 D~Vl~DaPCSg~G~~-------~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~ 399 (434)
T PRK14901 327 DRILLDAPCSGLGTL-------HRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQF 399 (434)
T ss_pred CEEEEeCCCCccccc-------ccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHH
Confidence 999999996533221 12222111111111 123468999999999999999875432 445667778
Q ss_pred HHHC-CCeeEE----EEecCCCCceEEEEEe
Q psy2395 544 LFKY-GFSDIK----SWRDLSGIERVTQGKI 569 (570)
Q Consensus 544 l~~~-Gf~~i~----~~~D~~g~~R~~~~~~ 569 (570)
++++ +|.... ++++..|.+-|+++++
T Consensus 400 l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l 430 (434)
T PRK14901 400 LARHPDWKLEPPKQKIWPHRQDGDGFFMAVL 430 (434)
T ss_pred HHhCCCcEecCCCCccCCCCCCCCcEEEEEE
Confidence 8876 576442 5666678888988874
No 81
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.46 E-value=1.4e-12 Score=131.71 Aligned_cols=150 Identities=19% Similarity=0.243 Sum_probs=107.5
Q ss_pred ecCCccccc--hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccC
Q psy2395 372 ITSDVLIPR--PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKY 449 (570)
Q Consensus 372 v~~~~~~pr--~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~ 449 (570)
++.+.+.|. +.+..++..+ ...++.+|||+|||+|..+..++... +++|+|+|+|+.+++.|+++...
T Consensus 28 ~g~~~~~~gg~~~~~~~l~~l---~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~----- 97 (263)
T PTZ00098 28 FGEDYISSGGIEATTKILSDI---ELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD----- 97 (263)
T ss_pred hCCCCCCCCchHHHHHHHHhC---CCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc-----
Confidence 345555555 3344444432 23567899999999999999998754 47999999999999999988752
Q ss_pred CCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEE
Q psy2395 450 NIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLL 529 (570)
Q Consensus 450 ~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~ 529 (570)
..++.+.++|+.+ .+.++++||+|+++..+... +......+++++.++|+|||.++
T Consensus 98 ~~~i~~~~~D~~~-~~~~~~~FD~V~s~~~l~h~-----------------------~~~d~~~~l~~i~r~LkPGG~lv 153 (263)
T PTZ00098 98 KNKIEFEANDILK-KDFPENTFDMIYSRDAILHL-----------------------SYADKKKLFEKCYKWLKPNGILL 153 (263)
T ss_pred CCceEEEECCccc-CCCCCCCeEEEEEhhhHHhC-----------------------CHHHHHHHHHHHHHHcCCCcEEE
Confidence 3469999999864 33334789999996432211 01234689999999999999998
Q ss_pred EEEcC----------------------CCHHHHHHHHHHCCCeeEEEE
Q psy2395 530 IEHGY----------------------NQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 530 ~~~~~----------------------~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
+.... .....+.++++++||..+...
T Consensus 154 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 201 (263)
T PTZ00098 154 ITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAK 201 (263)
T ss_pred EEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEE
Confidence 74310 123567888899999988654
No 82
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.45 E-value=2e-12 Score=131.35 Aligned_cols=132 Identities=21% Similarity=0.211 Sum_probs=100.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|..++.+++......+|+|+|+++.+++.|++|...++ -.+++++.+|+.+ ++..+++||+|+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g---~~~v~~~~~d~~~-l~~~~~~fD~Vi 151 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG---YTNVEFRLGEIEA-LPVADNSVDVII 151 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC---CCCEEEEEcchhh-CCCCCCceeEEE
Confidence 467899999999999988877765445689999999999999999987642 1368999999854 443346899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-----------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH----------------------- 532 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~----------------------- 532 (570)
+|..+.... ....+++++.++|+|||++++.-
T Consensus 152 ~~~v~~~~~-------------------------d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (272)
T PRK11873 152 SNCVINLSP-------------------------DKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVA 206 (272)
T ss_pred EcCcccCCC-------------------------CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhcccc
Confidence 986443211 12578899999999999998731
Q ss_pred cCCCHHHHHHHHHHCCCeeEEEEe
Q psy2395 533 GYNQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 533 ~~~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
+......+.+++.++||..+.+..
T Consensus 207 ~~~~~~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 207 GALQEEEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred CCCCHHHHHHHHHHCCCCceEEEe
Confidence 112345788899999999876643
No 83
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.44 E-value=8.6e-12 Score=134.62 Aligned_cols=183 Identities=15% Similarity=0.133 Sum_probs=120.4
Q ss_pred CCccccc-hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCC
Q psy2395 374 SDVLIPR-PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIP 452 (570)
Q Consensus 374 ~~~~~pr-~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~ 452 (570)
.|.+... ..+..++..+ . +.++.+|||+|||+|..+..++...+ .++|+|+|+++.+++.+++|+++++. ...
T Consensus 217 ~G~~~~Qd~~s~~~~~~L-~--~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~--~~~ 290 (426)
T TIGR00563 217 EGWVTVQDASAQWVATWL-A--PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGL--TIK 290 (426)
T ss_pred CCeEEEECHHHHHHHHHh-C--CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCC--CeE
Confidence 4444444 3343333333 2 35678999999999999999998775 57999999999999999999997532 223
Q ss_pred EEEEEcccccccc-cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCC----ChHHHHHHHHHHhhccccCeE
Q psy2395 453 IKFIKSNWYNNLQ-NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSN----GLSSIKEIVKNASKYLVKNGL 527 (570)
Q Consensus 453 v~~~~~D~~~~l~-~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~----gl~~~~~~l~~~~~~LkpgG~ 527 (570)
+.+..+|...... ...++||.|++|||+........ .|...+..... -......++..+.++|+|||.
T Consensus 291 v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~-------~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~ 363 (426)
T TIGR00563 291 AETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRR-------HPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGT 363 (426)
T ss_pred EEEeccccccccccccccccCEEEEcCCCCCCccccc-------CcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 5557777754221 12367999999999876543321 22221111111 123457899999999999999
Q ss_pred EEEEEcC----CCHHHHHHHHHHCC-Cee-------------EEEEecCCCCceEEEEEe
Q psy2395 528 LLIEHGY----NQSNLVRKLLFKYG-FSD-------------IKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 528 l~~~~~~----~~~~~l~~ll~~~G-f~~-------------i~~~~D~~g~~R~~~~~~ 569 (570)
+++.+.. .+...+..++.+++ |.. ++++++..+.+-++++++
T Consensus 364 lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l 423 (426)
T TIGR00563 364 LVYATCSVLPEENSEQIKAFLQEHPDFPFEKTGTPEQVRDGGLQILPHAEEGDGFFYAKL 423 (426)
T ss_pred EEEEeCCCChhhCHHHHHHHHHhCCCCeeccCCCccccCCCcEEECCCCCCCCCeEEEEE
Confidence 9886533 45666777777763 432 234555556677777764
No 84
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.44 E-value=3.2e-12 Score=113.14 Aligned_cols=105 Identities=18% Similarity=0.208 Sum_probs=83.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++..+ ..+|+|+|+|+.+++.|++|+..++ ..+++++.+|+.........+||+|+
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~v~ 93 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFG---VSNIVIVEGDAPEALEDSLPEPDRVF 93 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhC---CCceEEEeccccccChhhcCCCCEEE
Confidence 4567999999999999999998875 4799999999999999999998642 22588999987543333236899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
+..+. ..+..+++.+.+.|+|||++++.+
T Consensus 94 ~~~~~----------------------------~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 94 IGGSG----------------------------GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ECCcc----------------------------hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 95321 134688999999999999998753
No 85
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.44 E-value=3e-12 Score=137.95 Aligned_cols=170 Identities=22% Similarity=0.292 Sum_probs=112.6
Q ss_pred CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCE
Q psy2395 374 SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPI 453 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v 453 (570)
.|.+.....+..++..++. +.++.+|||+|||+|..+..++....+..+|+|+|+|+.+++.+++|+.+.+. .++
T Consensus 216 ~G~~~~Qd~~s~~~~~~l~--~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~---~~v 290 (431)
T PRK14903 216 DGLATVQGESSQIVPLLME--LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL---SSI 290 (431)
T ss_pred CCeEEEECHHHHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CeE
Confidence 3334333333344433332 35678999999999999999998764467999999999999999999987531 248
Q ss_pred EEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCCh-HHHHHHHHHHhhccccCeEEEEEE
Q psy2395 454 KFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGL-SSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 454 ~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl-~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
.+.++|+........++||.|++|||+.........+....+.+...+ .++ ....+++..+.++|+|||.+++.+
T Consensus 291 ~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~----~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 291 EIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDF----KKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred EEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHH----HHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999999865322224689999999999765433222222111111100 111 245789999999999999998866
Q ss_pred cC----CCHHHHHHHHHHC-CCeeE
Q psy2395 533 GY----NQSNLVRKLLFKY-GFSDI 552 (570)
Q Consensus 533 ~~----~~~~~l~~ll~~~-Gf~~i 552 (570)
.. .+...+..++.++ +|..+
T Consensus 367 Cs~~~eEne~vv~~fl~~~~~~~~~ 391 (431)
T PRK14903 367 CTVTKEENTEVVKRFVYEQKDAEVI 391 (431)
T ss_pred CCCChhhCHHHHHHHHHhCCCcEEe
Confidence 44 3445566666654 46543
No 86
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.43 E-value=3.1e-12 Score=121.60 Aligned_cols=153 Identities=22% Similarity=0.223 Sum_probs=99.7
Q ss_pred cchhHHHHHHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcCCCc--------EEEEEeCCHHHHHHHHHHHHhhcccC
Q psy2395 379 PRPETELLVDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKI--------EIIATDISKFALKIAKKNAKKKLTKY 449 (570)
Q Consensus 379 pr~~t~~l~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~--------~V~gvDis~~al~~A~~n~~~~~~~~ 449 (570)
|.+-.+.+...++... ..++..|||..||||.+.+..+....... +++|+|+++.+++.|+.|+...+ .
T Consensus 9 ~a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag--~ 86 (179)
T PF01170_consen 9 PAPLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG--V 86 (179)
T ss_dssp STSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---
T ss_pred CCCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc--c
Confidence 3333444444444432 24677999999999999999987765322 38999999999999999998753 3
Q ss_pred CCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEE
Q psy2395 450 NIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLL 529 (570)
Q Consensus 450 ~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~ 529 (570)
...+.+.+.|+.+. +...+++|+||+||||...-.. ..+...+|..+++.+.+.|++ +.++
T Consensus 87 ~~~i~~~~~D~~~l-~~~~~~~d~IvtnPPyG~r~~~-----------------~~~~~~ly~~~~~~~~~~l~~-~~v~ 147 (179)
T PF01170_consen 87 EDYIDFIQWDAREL-PLPDGSVDAIVTNPPYGRRLGS-----------------KKDLEKLYRQFLRELKRVLKP-RAVF 147 (179)
T ss_dssp CGGEEEEE--GGGG-GGTTSBSCEEEEE--STTSHCH-----------------HHHHHHHHHHHHHHHHCHSTT-CEEE
T ss_pred CCceEEEecchhhc-ccccCCCCEEEECcchhhhccC-----------------HHHHHHHHHHHHHHHHHHCCC-CEEE
Confidence 44699999999663 3345799999999999853210 111246889999999999999 4455
Q ss_pred EEEcCCCHHHHHHHHHHCCCeeEEEE
Q psy2395 530 IEHGYNQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 530 ~~~~~~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
+..+.... .+.+...++.....+
T Consensus 148 l~~~~~~~---~~~~~~~~~~~~~~~ 170 (179)
T PF01170_consen 148 LTTSNREL---EKALGLKGWRKRKLY 170 (179)
T ss_dssp EEESCCCH---HHHHTSTTSEEEEEE
T ss_pred EEECCHHH---HHHhcchhhceEEEE
Confidence 55554443 455666677665544
No 87
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.43 E-value=7.8e-13 Score=125.92 Aligned_cols=142 Identities=24% Similarity=0.359 Sum_probs=97.9
Q ss_pred cccCeeeeecCCccccchhHHHHHHHHHhhcC---CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 364 EFYGLVLNITSDVLIPRPETELLVDLIVKKTF---EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 364 ~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~---~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.|.|..+...++ ..-||.+..+-+.+...+. -.+.++||++||||.+++.++.++ ..+|+.||.|+.++...++
T Consensus 7 ~~kgr~l~~p~~-~~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~ 83 (183)
T PF03602_consen 7 KYKGRKLKTPKG-DNTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKK 83 (183)
T ss_dssp TTTT-EEE-TT---TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHH
T ss_pred ecCCCEecCCCC-CCcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHH
Confidence 455677766554 4456776666666555433 258899999999999999988877 4799999999999999999
Q ss_pred HHHhhcccCCCCEEEEEcccccccccC---CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHH
Q psy2395 441 NAKKKLTKYNIPIKFIKSNWYNNLQNY---KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKN 517 (570)
Q Consensus 441 n~~~~~~~~~~~v~~~~~D~~~~l~~~---~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~ 517 (570)
|++..+ ...++.++++|+...+... ..+||+|++||||.... .+..+++.
T Consensus 84 N~~~l~--~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~-------------------------~~~~~l~~ 136 (183)
T PF03602_consen 84 NLEKLG--LEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGL-------------------------YYEELLEL 136 (183)
T ss_dssp HHHHHT---GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCH-------------------------HHHHHHHH
T ss_pred HHHHhC--CCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccch-------------------------HHHHHHHH
Confidence 999753 2336899999987665432 47899999999997321 13555655
Q ss_pred Hh--hccccCeEEEEEEcCC
Q psy2395 518 AS--KYLVKNGLLLIEHGYN 535 (570)
Q Consensus 518 ~~--~~LkpgG~l~~~~~~~ 535 (570)
+. .+|+++|++++++...
T Consensus 137 l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 137 LAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHTTSEEEEEEEEEEEETT
T ss_pred HHHCCCCCCCEEEEEEecCC
Confidence 54 7899999999999664
No 88
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.6e-12 Score=123.96 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=110.7
Q ss_pred hhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHHHHh
Q psy2395 313 NILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVK 392 (570)
Q Consensus 313 ~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~ 392 (570)
+.++.++..+||+.|+......+.+.|.. .|+ ..+..+..|.....+-.++
T Consensus 18 ~~v~~A~~~vPRe~FVp~~~~~~AY~d~~------------lpi----------------~~gqtis~P~~vA~m~~~L- 68 (209)
T COG2518 18 ERVLKAFLAVPRELFVPAAYKHLAYEDRA------------LPI----------------GCGQTISAPHMVARMLQLL- 68 (209)
T ss_pred HHHHHHHHhCCHHhccCchhhcccccCCc------------ccC----------------CCCceecCcHHHHHHHHHh-
Confidence 67899999999999987655544443322 222 3444454443333222222
Q ss_pred hcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCcee
Q psy2395 393 KTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFN 472 (570)
Q Consensus 393 ~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD 472 (570)
...++.+|||||||||+.+..||+.. .+|+++|+.++..+.|++|+...+. .+|.++++|....++. ..+||
T Consensus 69 -~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~---~nV~v~~gDG~~G~~~-~aPyD 140 (209)
T COG2518 69 -ELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGY---ENVTVRHGDGSKGWPE-EAPYD 140 (209)
T ss_pred -CCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCC---CceEEEECCcccCCCC-CCCcC
Confidence 24678999999999999999999886 3999999999999999999997532 1499999999887765 47999
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
.|+.+--.- +..+.++ +.|++||++++-++.
T Consensus 141 ~I~Vtaaa~---------------------------~vP~~Ll----~QL~~gGrlv~PvG~ 171 (209)
T COG2518 141 RIIVTAAAP---------------------------EVPEALL----DQLKPGGRLVIPVGS 171 (209)
T ss_pred EEEEeeccC---------------------------CCCHHHH----HhcccCCEEEEEEcc
Confidence 999852110 0113344 489999999998884
No 89
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.42 E-value=1.9e-12 Score=126.16 Aligned_cols=138 Identities=12% Similarity=0.205 Sum_probs=96.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc-------ccCC
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL-------QNYK 468 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l-------~~~~ 468 (570)
+++.+|||+|||+|.++..+++......+|+|||+++ + . ...++.++++|+.+.. ....
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------D-----PIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------c-----CCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 5678999999999999999998764457999999998 1 1 1124889999997631 1224
Q ss_pred CceeEEEECC-CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-cCCCHHHHHHHHHH
Q psy2395 469 KLFNIIVANP-PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-GYNQSNLVRKLLFK 546 (570)
Q Consensus 469 ~~fD~Iv~NP-Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~l~~ll~~ 546 (570)
++||+|++|+ |+...... ..+ + ........+++.+.++|+|||.+++.+ .......+...++
T Consensus 116 ~~~D~V~S~~~~~~~g~~~------~d~-~--------~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~- 179 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPA------VDI-P--------RAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIR- 179 (209)
T ss_pred CCCCEEecCCCCccCCChH------HHH-H--------HHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHH-
Confidence 6899999996 44321100 000 0 001224678999999999999999844 4455555544443
Q ss_pred CCCeeEEEEecCCCCce
Q psy2395 547 YGFSDIKSWRDLSGIER 563 (570)
Q Consensus 547 ~Gf~~i~~~~D~~g~~R 563 (570)
..|..+++++|.++++|
T Consensus 180 ~~f~~v~~~Kp~ssr~~ 196 (209)
T PRK11188 180 SLFTKVKVRKPDSSRAR 196 (209)
T ss_pred hCceEEEEECCcccccc
Confidence 37999999999998875
No 90
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.42 E-value=4.2e-12 Score=133.91 Aligned_cols=151 Identities=19% Similarity=0.144 Sum_probs=109.6
Q ss_pred eeeeecCCccccc--hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy2395 368 LVLNITSDVLIPR--PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKK 445 (570)
Q Consensus 368 ~~~~v~~~~~~pr--~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~ 445 (570)
..|.++|+.|.+. ..++.|++++.......+.+|||+|||+|.+++.+++.. .+|+|||+|+.|++.|++|+..|
T Consensus 175 ~~~~~~~~sF~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~ 251 (362)
T PRK05031 175 FIYRQVENSFTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAAN 251 (362)
T ss_pred EEEEeCCCCeeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHh
Confidence 5778888888776 468888888877653334579999999999999999764 48999999999999999999875
Q ss_pred cccCCCCEEEEEcccccccccC---------------CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHH
Q psy2395 446 LTKYNIPIKFIKSNWYNNLQNY---------------KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSS 510 (570)
Q Consensus 446 ~~~~~~~v~~~~~D~~~~l~~~---------------~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~ 510 (570)
+. .+++|+.+|+.+.+... ..+||+|+.|||+.- .
T Consensus 252 ~~---~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G---------------------------~ 301 (362)
T PRK05031 252 GI---DNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAG---------------------------L 301 (362)
T ss_pred CC---CcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCC---------------------------C
Confidence 32 26999999997654321 125899999999731 1
Q ss_pred HHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEEEE
Q psy2395 511 IKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 511 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
...+++.+.+ +++++++++.+.....-...|.+ ||+..++.
T Consensus 302 ~~~~l~~l~~---~~~ivyvSC~p~tlarDl~~L~~-gY~l~~v~ 342 (362)
T PRK05031 302 DDETLKLVQA---YERILYISCNPETLCENLETLSQ-THKVERFA 342 (362)
T ss_pred cHHHHHHHHc---cCCEEEEEeCHHHHHHHHHHHcC-CcEEEEEE
Confidence 1444544433 68889998877543333334444 88765443
No 91
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.41 E-value=3.3e-12 Score=128.52 Aligned_cols=99 Identities=14% Similarity=0.127 Sum_probs=79.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++...+ +.+|+|+|+|+.|++.|+++ +++++++|+.+. . ..++||+|+
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~-~-~~~~fD~v~ 94 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER----------GVDARTGDVRDW-K-PKPDTDVVV 94 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc----------CCcEEEcChhhC-C-CCCCceEEE
Confidence 4678999999999999999998875 57999999999999999652 267899998653 2 247899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
+|..++..+ ....+++++.+.|+|||.+++.+
T Consensus 95 ~~~~l~~~~-------------------------d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 95 SNAALQWVP-------------------------EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EehhhhhCC-------------------------CHHHHHHHHHHhCCCCcEEEEEc
Confidence 987654321 12678889999999999998754
No 92
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.41 E-value=2.3e-12 Score=131.25 Aligned_cols=155 Identities=20% Similarity=0.211 Sum_probs=113.6
Q ss_pred cCCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCC
Q psy2395 373 TSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIP 452 (570)
Q Consensus 373 ~~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~ 452 (570)
.|+.+-| ..++.++..+. ..++..|||..||||.+.+.+...+ ++++|+|++..|+.-|+.|++..+ -..
T Consensus 177 ~p~s~~P-~lAR~mVNLa~---v~~G~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~Nl~~y~---i~~ 246 (347)
T COG1041 177 RPGSMDP-RLARAMVNLAR---VKRGELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKINLEYYG---IED 246 (347)
T ss_pred CcCCcCH-HHHHHHHHHhc---cccCCEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhhhhhhhC---cCc
Confidence 4555544 34555555542 3578899999999999999998654 799999999999999999999742 123
Q ss_pred EEEEEc-ccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 453 IKFIKS-NWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 453 v~~~~~-D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
..+..+ |+.. ++..+.+||.|+++|||....... +..-.+.|.++++.+.+.|++||+++|.
T Consensus 247 ~~~~~~~Da~~-lpl~~~~vdaIatDPPYGrst~~~----------------~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 247 YPVLKVLDATN-LPLRDNSVDAIATDPPYGRSTKIK----------------GEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred eeEEEeccccc-CCCCCCccceEEecCCCCcccccc----------------cccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 555555 8854 444335699999999998654221 1111357899999999999999999998
Q ss_pred EcCCCHHHHHHHHHHCCCeeEEEEecC
Q psy2395 532 HGYNQSNLVRKLLFKYGFSDIKSWRDL 558 (570)
Q Consensus 532 ~~~~~~~~l~~ll~~~Gf~~i~~~~D~ 558 (570)
.+... ...+.+.||.++..+...
T Consensus 310 ~p~~~----~~~~~~~~f~v~~~~~~~ 332 (347)
T COG1041 310 APRDP----RHELEELGFKVLGRFTMR 332 (347)
T ss_pred cCCcc----hhhHhhcCceEEEEEEEe
Confidence 87333 334567899998877765
No 93
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.41 E-value=3.1e-12 Score=122.65 Aligned_cols=141 Identities=16% Similarity=0.176 Sum_probs=100.7
Q ss_pred cccCeeeeecCCccccchhHHHHHHHHHhhcC--CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 364 EFYGLVLNITSDVLIPRPETELLVDLIVKKTF--EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 364 ~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~--~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
.+.+..+...++.. .||.+..+.+.+...+. -.+.+|||+|||||.+++.++.++. .+|++||+++.+++.+++|
T Consensus 15 ~~kg~~l~~p~~~~-~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N 91 (189)
T TIGR00095 15 WRGGRLLKLPPGGS-TRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKEN 91 (189)
T ss_pred hhCCcccCCCCCCC-CCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHH
Confidence 44566666655544 45666666655554432 2577999999999999999998763 5899999999999999999
Q ss_pred HHhhcccCCCCEEEEEcccccccccC---CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHH
Q psy2395 442 AKKKLTKYNIPIKFIKSNWYNNLQNY---KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNA 518 (570)
Q Consensus 442 ~~~~~~~~~~~v~~~~~D~~~~l~~~---~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~ 518 (570)
+..++ ...+++++++|+++.+... ...||+|+.+|||... .+..+++.+
T Consensus 92 ~~~~~--~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~--------------------------~~~~~l~~l 143 (189)
T TIGR00095 92 LALLK--SGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNG--------------------------ALQALLELC 143 (189)
T ss_pred HHHhC--CcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCC--------------------------cHHHHHHHH
Confidence 99863 2336899999997654321 1248999999999632 112222222
Q ss_pred --hhccccCeEEEEEEcCC
Q psy2395 519 --SKYLVKNGLLLIEHGYN 535 (570)
Q Consensus 519 --~~~LkpgG~l~~~~~~~ 535 (570)
..+|+++|.+++++...
T Consensus 144 ~~~~~l~~~~iiv~E~~~~ 162 (189)
T TIGR00095 144 ENNWILEDTVLIVVEEDRE 162 (189)
T ss_pred HHCCCCCCCeEEEEEecCC
Confidence 35799999999988653
No 94
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.41 E-value=5.5e-12 Score=125.67 Aligned_cols=109 Identities=14% Similarity=0.184 Sum_probs=83.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSK-NKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
..++.+|||+|||+|.++..+++.+. ++++|+|+|+|+.|++.|++++...+ ...+++++++|+.+. +. ..+|+
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~--~~~~v~~~~~d~~~~-~~--~~~d~ 125 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH--SEIPVEILCNDIRHV-EI--KNASM 125 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEECChhhC-CC--CCCCE
Confidence 35677999999999999999988642 36899999999999999999987531 234689999999653 32 45899
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
|+++-..+... ......+++++.+.|+|||.+++.
T Consensus 126 v~~~~~l~~~~-----------------------~~~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 126 VILNFTLQFLP-----------------------PEDRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred EeeecchhhCC-----------------------HHHHHHHHHHHHHhcCCCeEEEEe
Confidence 99864322110 113467899999999999999875
No 95
>PRK04266 fibrillarin; Provisional
Probab=99.40 E-value=1.8e-11 Score=120.44 Aligned_cols=140 Identities=16% Similarity=0.163 Sum_probs=100.7
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc--ccCCCcee
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL--QNYKKLFN 472 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l--~~~~~~fD 472 (570)
..++.+|||+|||+|.++..++...+ ..+|+|+|+++.|++.+.+++.. ..++.++.+|+..+. ....++||
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~-----~~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEE-----RKNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhh-----cCCcEEEECCCCCcchhhhccccCC
Confidence 35778999999999999999998875 56999999999999988888764 245889999986531 11235799
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC------C----HHHHHH
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN------Q----SNLVRK 542 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~------~----~~~l~~ 542 (570)
+|+++.+. | .....+++.+.++|||||.+++.++.. . .+...+
T Consensus 144 ~i~~d~~~----------------p-----------~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~ 196 (226)
T PRK04266 144 VIYQDVAQ----------------P-----------NQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIR 196 (226)
T ss_pred EEEECCCC----------------h-----------hHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHH
Confidence 99986431 0 112456889999999999999853321 1 223568
Q ss_pred HHHHCCCeeEEEEecCCCC---ceEEEEE
Q psy2395 543 LLFKYGFSDIKSWRDLSGI---ERVTQGK 568 (570)
Q Consensus 543 ll~~~Gf~~i~~~~D~~g~---~R~~~~~ 568 (570)
.+.++||+.++.. |+... .-.++++
T Consensus 197 ~l~~aGF~~i~~~-~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 197 KLEEGGFEILEVV-DLEPYHKDHAAVVAR 224 (226)
T ss_pred HHHHcCCeEEEEE-cCCCCcCCeEEEEEE
Confidence 8999999988655 34333 4455554
No 96
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.40 E-value=1.8e-11 Score=125.95 Aligned_cols=185 Identities=18% Similarity=0.167 Sum_probs=121.0
Q ss_pred eechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhH-HHHHHHHHhhc-CCCCCEEEEEC
Q psy2395 328 IINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPET-ELLVDLIVKKT-FEKKIKLLEMG 405 (570)
Q Consensus 328 ~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t-~~l~~~~~~~~-~~~~~~VLDlG 405 (570)
-+....+++..+.+.+...+.+.. |..+ | +| .+ .++.+|.... ......++..+ ..++.+|||+|
T Consensus 63 ~~~~~~~~~~~~~~~l~~~l~~l~---p~~~--~--~~-----~l-~~~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvG 129 (314)
T TIGR00452 63 CNDKSNPLSAGQIKRILEEIMALM---PWRK--G--PF-----EL-SGIKIDSEWRSDIKWDRVLPHLSPLKGRTILDVG 129 (314)
T ss_pred ccCCCCCCCHHHHHHHHHHHHhcC---CCCC--C--Cc-----cc-ccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEec
Confidence 345667788888888887765432 2221 1 11 11 2445555432 33334444433 24578999999
Q ss_pred CcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCC
Q psy2395 406 TGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGD 485 (570)
Q Consensus 406 cGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~ 485 (570)
||+|.++..++..++ ..|+|+|.|+.++..++...... ....++.+..+++.+ ++. ..+||+|+|+--++...
T Consensus 130 CG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~--~~~~~v~~~~~~ie~-lp~-~~~FD~V~s~gvL~H~~- 202 (314)
T TIGR00452 130 CGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLL--DNDKRAILEPLGIEQ-LHE-LYAFDTVFSMGVLYHRK- 202 (314)
T ss_pred cCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHh--ccCCCeEEEECCHHH-CCC-CCCcCEEEEcchhhccC-
Confidence 999999999887653 48999999999998754432211 123468888888744 332 25899999974322111
Q ss_pred cccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE----cCC--------------------CHHHHH
Q psy2395 486 IHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH----GYN--------------------QSNLVR 541 (570)
Q Consensus 486 ~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~----~~~--------------------~~~~l~ 541 (570)
....++.++++.|+|||.++++. +.. ....+.
T Consensus 203 ------------------------dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~ 258 (314)
T TIGR00452 203 ------------------------SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALK 258 (314)
T ss_pred ------------------------CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHH
Confidence 23578899999999999999752 110 245678
Q ss_pred HHHHHCCCeeEEEEe
Q psy2395 542 KLLFKYGFSDIKSWR 556 (570)
Q Consensus 542 ~ll~~~Gf~~i~~~~ 556 (570)
.+++++||+.+++..
T Consensus 259 ~~L~~aGF~~V~i~~ 273 (314)
T TIGR00452 259 NWLEKVGFENFRILD 273 (314)
T ss_pred HHHHHCCCeEEEEEe
Confidence 899999999987653
No 97
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.40 E-value=3.1e-12 Score=132.07 Aligned_cols=128 Identities=15% Similarity=0.198 Sum_probs=97.2
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|.++..+++. +++|+|||+++.+++.|+.++.... ...++.++++|+.+ ++..+++||+|++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~--~~~~i~~~~~dae~-l~~~~~~FD~Vi~ 204 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDP--VTSTIEYLCTTAEK-LADEGRKFDAVLS 204 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcC--cccceeEEecCHHH-hhhccCCCCEEEE
Confidence 4569999999999999999864 4799999999999999998876421 22369999999854 3433478999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC----------------------
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY---------------------- 534 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~---------------------- 534 (570)
.-.+.. +.....+++.+.++|||||.+++.+..
T Consensus 205 ~~vLeH-------------------------v~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~ 259 (322)
T PLN02396 205 LEVIEH-------------------------VANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPK 259 (322)
T ss_pred hhHHHh-------------------------cCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCC
Confidence 432111 112367899999999999999875421
Q ss_pred --------CCHHHHHHHHHHCCCeeEEEE
Q psy2395 535 --------NQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 535 --------~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
...+++..+++++||..+.+.
T Consensus 260 gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 260 GTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred CCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 125788999999999987763
No 98
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.39 E-value=5.2e-12 Score=122.11 Aligned_cols=127 Identities=15% Similarity=0.153 Sum_probs=93.2
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|++++..++ -.++++.++|+.+. +. .++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~---~~~v~~~~~d~~~~-~~-~~~fD~I~~ 101 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAEN---LDNLHTAVVDLNNL-TF-DGEYDFILS 101 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcC---CCcceEEecChhhC-Cc-CCCcCEEEE
Confidence 4679999999999999999975 3699999999999999999987642 12488999998653 22 367999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE--cC------------CCHHHHHH
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH--GY------------NQSNLVRK 542 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~--~~------------~~~~~l~~ 542 (570)
+..++..+ .+....+++.+.+.|+|||.+++.. .. ...+++.+
T Consensus 102 ~~~~~~~~-----------------------~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~ 158 (197)
T PRK11207 102 TVVLMFLE-----------------------AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRR 158 (197)
T ss_pred ecchhhCC-----------------------HHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHH
Confidence 76532110 1235789999999999999965432 10 12455677
Q ss_pred HHHHCCCeeEEEEe
Q psy2395 543 LLFKYGFSDIKSWR 556 (570)
Q Consensus 543 ll~~~Gf~~i~~~~ 556 (570)
++. ||..+....
T Consensus 159 ~~~--~~~~~~~~~ 170 (197)
T PRK11207 159 YYE--GWEMVKYNE 170 (197)
T ss_pred HhC--CCeEEEeeC
Confidence 775 898876643
No 99
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.39 E-value=1.3e-12 Score=126.21 Aligned_cols=106 Identities=16% Similarity=0.311 Sum_probs=84.3
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||-|.++..+|+.+ +.|+|+|+++.+++.|+..+.. .+..+.+.+..+.+ +....++||+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e----~gv~i~y~~~~~ed-l~~~~~~FDvV~c 130 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALE----SGVNIDYRQATVED-LASAGGQFDVVTC 130 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhh----ccccccchhhhHHH-HHhcCCCccEEEE
Confidence 67899999999999999999875 7999999999999999999987 35557788887755 3333479999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN 535 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~ 535 (570)
.- ++.|- .....++..+.+++||||.+++.+...
T Consensus 131 mE-------------VlEHv------------~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 131 ME-------------VLEHV------------PDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred hh-------------HHHcc------------CCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 42 22221 133679999999999999999876543
No 100
>KOG1540|consensus
Probab=99.38 E-value=5.1e-12 Score=122.01 Aligned_cols=141 Identities=21% Similarity=0.291 Sum_probs=101.5
Q ss_pred HHHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcCC-----CcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcc
Q psy2395 386 LVDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKN-----KIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459 (570)
Q Consensus 386 l~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~~-----~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D 459 (570)
+-+..+..+ +.++.++||+|||||-++..+.+.... ..+|+.+||||.|++.+++.+.+..+....++.|+++|
T Consensus 88 WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~d 167 (296)
T KOG1540|consen 88 WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGD 167 (296)
T ss_pred HHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCC
Confidence 334443333 346789999999999999999887642 27999999999999999999976433333459999999
Q ss_pred cccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE-EEcCCCHH
Q psy2395 460 WYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI-EHGYNQSN 538 (570)
Q Consensus 460 ~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~ 538 (570)
+ +.++.++.+||...+-- . -.....+.+.+++++|+|||||++++ +++....+
T Consensus 168 A-E~LpFdd~s~D~yTiaf--G-----------------------IRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~ 221 (296)
T KOG1540|consen 168 A-EDLPFDDDSFDAYTIAF--G-----------------------IRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENE 221 (296)
T ss_pred c-ccCCCCCCcceeEEEec--c-----------------------eecCCCHHHHHHHHHHhcCCCcEEEEEEccccccH
Confidence 9 44777778999988721 1 01122458999999999999999864 66655555
Q ss_pred HHHHHHHHCCCeeE
Q psy2395 539 LVRKLLFKYGFSDI 552 (570)
Q Consensus 539 ~l~~ll~~~Gf~~i 552 (570)
.+..+....-|.++
T Consensus 222 ~l~~fy~~ysf~Vl 235 (296)
T KOG1540|consen 222 PLKWFYDQYSFDVL 235 (296)
T ss_pred HHHHHHHhhhhhhh
Confidence 55555555445544
No 101
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.38 E-value=1.2e-11 Score=119.40 Aligned_cols=126 Identities=17% Similarity=0.231 Sum_probs=92.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.+++.+++..+ +.+|+|+|+|+.+++.|++|+..++. .+++++.+|+.+.+......+|.++
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~---~~v~~~~~d~~~~~~~~~~~~d~v~ 114 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGV---KNVEVIEGSAPECLAQLAPAPDRVC 114 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC---CCeEEEECchHHHHhhCCCCCCEEE
Confidence 4678999999999999999987765 57999999999999999999987531 3589999998653332223456665
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC-CHHHHHHHHHHC---CCee
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN-QSNLVRKLLFKY---GFSD 551 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~l~~ll~~~---Gf~~ 551 (570)
.+.. ..+..+++.+.+.|+|||.+++..... ....+.+.+.+. ++..
T Consensus 115 ~~~~-----------------------------~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (196)
T PRK07402 115 IEGG-----------------------------RPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEV 165 (196)
T ss_pred EECC-----------------------------cCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceE
Confidence 5210 123678899999999999998876543 334456666654 5566
Q ss_pred EEE
Q psy2395 552 IKS 554 (570)
Q Consensus 552 i~~ 554 (570)
+++
T Consensus 166 ~~~ 168 (196)
T PRK07402 166 VQA 168 (196)
T ss_pred EEE
Confidence 554
No 102
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.38 E-value=6.7e-12 Score=121.86 Aligned_cols=157 Identities=15% Similarity=0.116 Sum_probs=105.6
Q ss_pred hhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHHHHh
Q psy2395 313 NILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVK 392 (570)
Q Consensus 313 ~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~ 392 (570)
+.+++++..++|+.|++......++. +..+.++.+..+..|.....+-.++.
T Consensus 18 ~~v~~A~~~VpR~~Fvp~~~~~~aY~----------------------------d~~l~i~~~~~is~P~~~a~~l~~L~ 69 (209)
T PF01135_consen 18 PRVLDAFRAVPREDFVPPAFRDLAYE----------------------------DRPLPIGCGQTISAPSMVARMLEALD 69 (209)
T ss_dssp HHHHHHHHHS-GGGCSSCGGGGGTTS----------------------------SS-EEEETTEEE--HHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHhCchhhhcCCCC----------------------------CCCeeecceeechHHHHHHHHHHHHh
Confidence 56888999999999987644433332 33333344555555543332222222
Q ss_pred hcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCcee
Q psy2395 393 KTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFN 472 (570)
Q Consensus 393 ~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD 472 (570)
.+++.+|||+|||||+.+..++....+...|+++|+++..++.|++|+...+ -.++.++++|....++. ..+||
T Consensus 70 --l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~---~~nv~~~~gdg~~g~~~-~apfD 143 (209)
T PF01135_consen 70 --LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG---IDNVEVVVGDGSEGWPE-EAPFD 143 (209)
T ss_dssp --C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT---THSEEEEES-GGGTTGG-G-SEE
T ss_pred --cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc---cCceeEEEcchhhcccc-CCCcC
Confidence 4678999999999999999999887555689999999999999999999753 22699999999877654 46899
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
.|+++...-. .... ..+.|++||++++.++.
T Consensus 144 ~I~v~~a~~~---------------------------ip~~----l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 144 RIIVTAAVPE---------------------------IPEA----LLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp EEEESSBBSS-----------------------------HH----HHHTEEEEEEEEEEESS
T ss_pred EEEEeeccch---------------------------HHHH----HHHhcCCCcEEEEEEcc
Confidence 9999643210 1133 44489999999987764
No 103
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.38 E-value=2.8e-11 Score=119.86 Aligned_cols=146 Identities=18% Similarity=0.223 Sum_probs=110.7
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|.++..++..++...+++++|+++.+++.+++++..++ ...++.++.+|+.+. +...++||+|++
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~-~~~~~~~D~I~~ 127 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG--LSGNVEFVQGDAEAL-PFPDNSFDAVTI 127 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc--cccCeEEEecccccC-CCCCCCccEEEE
Confidence 56799999999999999999887535899999999999999999986531 234689999998653 233468999998
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE-EcC--C------------------
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE-HGY--N------------------ 535 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~-~~~--~------------------ 535 (570)
+--.... .....++..+.+.|+|||.+++. ... .
T Consensus 128 ~~~l~~~-------------------------~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (239)
T PRK00216 128 AFGLRNV-------------------------PDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLI 182 (239)
T ss_pred ecccccC-------------------------CCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHH
Confidence 5322111 12367888999999999998763 211 1
Q ss_pred ----------------------CHHHHHHHHHHCCCeeEEEEecCCCCceEEEEEeC
Q psy2395 536 ----------------------QSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGKIS 570 (570)
Q Consensus 536 ----------------------~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~~ 570 (570)
....+..++.++||..+.+.....|.--+++|+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 239 (239)
T PRK00216 183 GKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYKP 239 (239)
T ss_pred HHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEecC
Confidence 12457788999999999999888888888888753
No 104
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.37 E-value=3.6e-12 Score=122.99 Aligned_cols=125 Identities=14% Similarity=0.184 Sum_probs=91.9
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|.+++.+++. +.+|+|+|+|+.|++.+++++..+ +.++.+..+|+.. .+. .++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~-~~~-~~~fD~I~~ 100 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARE----NLPLRTDAYDINA-AAL-NEDYDFIFS 100 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHh----CCCceeEeccchh-ccc-cCCCCEEEE
Confidence 4679999999999999999975 369999999999999999988753 3457788888743 222 357999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-------cC-------CCHHHHHH
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-------GY-------NQSNLVRK 542 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-------~~-------~~~~~l~~ 542 (570)
+.+|+..+ ......+++.+.++|+|||++++.. +. ....++.+
T Consensus 101 ~~~~~~~~-----------------------~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~ 157 (195)
T TIGR00477 101 TVVFMFLQ-----------------------AGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQ 157 (195)
T ss_pred ecccccCC-----------------------HHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHH
Confidence 88765321 1244688999999999999965532 10 12456666
Q ss_pred HHHHCCCeeEEEE
Q psy2395 543 LLFKYGFSDIKSW 555 (570)
Q Consensus 543 ll~~~Gf~~i~~~ 555 (570)
++. +|.++...
T Consensus 158 ~f~--~~~~~~~~ 168 (195)
T TIGR00477 158 YYA--DWELLKYN 168 (195)
T ss_pred HhC--CCeEEEee
Confidence 665 57776544
No 105
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.36 E-value=5.6e-12 Score=126.25 Aligned_cols=109 Identities=15% Similarity=0.186 Sum_probs=84.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
..++.+|||+|||+|..+..+++.. .++++|+|+|+|+.|++.|++++..++ ...+++++++|+.+. +. ..+|+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~--~~~~v~~~~~d~~~~-~~--~~~D~ 128 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVIEGDIRDI-AI--ENASM 128 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEeCChhhC-CC--CCCCE
Confidence 4567899999999999999988742 236899999999999999999997642 234699999998653 32 45999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
|++|..++..+ .+....+++++++.|+|||.+++.
T Consensus 129 vv~~~~l~~l~-----------------------~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 129 VVLNFTLQFLE-----------------------PSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred EehhhHHHhCC-----------------------HHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99986543211 012367899999999999999874
No 106
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=5.7e-12 Score=122.76 Aligned_cols=128 Identities=19% Similarity=0.245 Sum_probs=107.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
..++.+|+|.|+|||.++.+||+...+..+|+.+|+.++.++.|++|++..+ ...++++..+|+.+.... ..||+|
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~--l~d~v~~~~~Dv~~~~~~--~~vDav 167 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG--LGDRVTLKLGDVREGIDE--EDVDAV 167 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc--cccceEEEeccccccccc--cccCEE
Confidence 3578999999999999999999866556899999999999999999999863 444599999999876654 489999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-CCHHHHHHHHHHCCCeeEE
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-NQSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~l~~ll~~~Gf~~i~ 553 (570)
+.+.| +| -.+++.+.+.|+|||.+++..|. +|...+.+.|++.||..++
T Consensus 168 ~LDmp----------------~P--------------W~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 168 FLDLP----------------DP--------------WNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIE 217 (256)
T ss_pred EEcCC----------------Ch--------------HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchh
Confidence 99865 12 46788889999999999988775 7889999999999998876
Q ss_pred EEe
Q psy2395 554 SWR 556 (570)
Q Consensus 554 ~~~ 556 (570)
.+.
T Consensus 218 ~~E 220 (256)
T COG2519 218 AVE 220 (256)
T ss_pred hhe
Confidence 554
No 107
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.35 E-value=7.2e-12 Score=126.19 Aligned_cols=102 Identities=17% Similarity=0.185 Sum_probs=82.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++...+ +.+|+|+|+|+.+++.|+++.. ++.++.+|+.+..+ ..+||+|+
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~~--------~~~~~~~d~~~~~~--~~~fD~v~ 98 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRLP--------DCQFVEADIASWQP--PQALDLIF 98 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhCC--------CCeEEECchhccCC--CCCccEEE
Confidence 4578999999999999999998875 5799999999999999987743 37899999865432 36899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
+|..+.... ....+++.+.+.|+|||.+++.++
T Consensus 99 ~~~~l~~~~-------------------------d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 99 ANASLQWLP-------------------------DHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred EccChhhCC-------------------------CHHHHHHHHHHhcCCCcEEEEECC
Confidence 987654221 236788999999999999988654
No 108
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.35 E-value=4.7e-11 Score=116.98 Aligned_cols=143 Identities=20% Similarity=0.283 Sum_probs=109.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++.++...+++|+|+++.+++.++++.. ...++.++.+|+.+. +...++||+|+
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~-~~~~~~~D~i~ 111 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-----LPLNIEFIQADAEAL-PFEDNSFDAVT 111 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-----cCCCceEEecchhcC-CCCCCcEEEEE
Confidence 367899999999999999999887533689999999999999998875 234688999999663 33346899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE---cC------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH---GY------------------ 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~---~~------------------ 534 (570)
++-.+... .....+++.+.+.|+|||++++.. +.
T Consensus 112 ~~~~~~~~-------------------------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
T TIGR01934 112 IAFGLRNV-------------------------TDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPS 166 (223)
T ss_pred EeeeeCCc-------------------------ccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhh
Confidence 85332211 124678899999999999987632 11
Q ss_pred ----------------------CCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEEe
Q psy2395 535 ----------------------NQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 535 ----------------------~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~ 569 (570)
...+.+..++.++||..+.+.+...|...+++|+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 167 IGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred hhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 02345788899999999999988888888888863
No 109
>PRK08317 hypothetical protein; Provisional
Probab=99.35 E-value=3.7e-11 Score=118.74 Aligned_cols=142 Identities=15% Similarity=0.148 Sum_probs=101.5
Q ss_pred HHHHHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc
Q psy2395 384 ELLVDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN 462 (570)
Q Consensus 384 ~~l~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~ 462 (570)
..+.+.++... ..++.+|||+|||+|.++..++....+..+++|+|+|+.+++.|+++... ...++.+..+|+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~----~~~~~~~~~~d~~~ 80 (241)
T PRK08317 5 RRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG----LGPNVEFVRGDADG 80 (241)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC----CCCceEEEeccccc
Confidence 33444444432 24678999999999999999998763357999999999999999998432 34568999999854
Q ss_pred ccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC-------
Q psy2395 463 NLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN------- 535 (570)
Q Consensus 463 ~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~------- 535 (570)
.+...++||+|+++-.+... .....+++.+.+.|+|||++++..+..
T Consensus 81 -~~~~~~~~D~v~~~~~~~~~-------------------------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~ 134 (241)
T PRK08317 81 -LPFPDGSFDAVRSDRVLQHL-------------------------EDPARALAEIARVLRPGGRVVVLDTDWDTLVWHS 134 (241)
T ss_pred -CCCCCCCceEEEEechhhcc-------------------------CCHHHHHHHHHHHhcCCcEEEEEecCCCceeecC
Confidence 23334789999996443211 123678889999999999998754210
Q ss_pred ---------------------CHHHHHHHHHHCCCeeEEEE
Q psy2395 536 ---------------------QSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 536 ---------------------~~~~l~~ll~~~Gf~~i~~~ 555 (570)
....+.+++.++||..+.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 175 (241)
T PRK08317 135 GDRALMRKILNFWSDHFADPWLGRRLPGLFREAGLTDIEVE 175 (241)
T ss_pred CChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCCCceeEE
Confidence 02356778889999876543
No 110
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.35 E-value=1.4e-11 Score=129.38 Aligned_cols=119 Identities=20% Similarity=0.284 Sum_probs=95.6
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCC---CceeEE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYK---KLFNII 474 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~---~~fD~I 474 (570)
+.+|||++|-||.+++.+|..+ ..+|++||+|..+++.|++|+..|+. ...++.|+++|+++.+.... .+||+|
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gG--A~~vt~VD~S~~al~~a~~N~~LNg~-~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGG--ASEVTSVDLSKRALEWARENAELNGL-DGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcC--CCceEEEeccHHHHHHHHHHHHhcCC-CccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 8899999999999999999765 35999999999999999999998753 23458999999998776443 489999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN 535 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~ 535 (570)
|.|||-+...... ..+....|..++..+.++|+|||.+++.....
T Consensus 295 ilDPPsF~r~k~~----------------~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 295 ILDPPSFARSKKQ----------------EFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred EECCcccccCccc----------------chhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 9999955432110 01334678899999999999999998866543
No 111
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.34 E-value=1.4e-11 Score=121.25 Aligned_cols=128 Identities=13% Similarity=0.150 Sum_probs=97.5
Q ss_pred CEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECC
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANP 478 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NP 478 (570)
.+|||+|||+|..+..+++.++ +.+|+|+|+|+.+++.|++++...+ ...+++++.+|+.+. +. .++||+|+++-
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~g--l~~~i~~~~~d~~~~-~~-~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALG--LQGRIRIFYRDSAKD-PF-PDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC--CCcceEEEecccccC-CC-CCCCCEeehHH
Confidence 3799999999999999998875 5799999999999999999987642 344689999998554 22 36899999843
Q ss_pred CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC----------------CCHHHHHH
Q psy2395 479 PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY----------------NQSNLVRK 542 (570)
Q Consensus 479 Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~----------------~~~~~l~~ 542 (570)
.+... .....+++.+.++|+|||++++.... .....+.+
T Consensus 76 ~l~~~-------------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 130 (224)
T smart00828 76 VIHHI-------------------------KDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAE 130 (224)
T ss_pred HHHhC-------------------------CCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHH
Confidence 22111 12368899999999999999874321 12456788
Q ss_pred HHHHCCCeeEEEEe
Q psy2395 543 LLFKYGFSDIKSWR 556 (570)
Q Consensus 543 ll~~~Gf~~i~~~~ 556 (570)
++.+.||..++...
T Consensus 131 ~l~~~Gf~~~~~~~ 144 (224)
T smart00828 131 LLARNNLRVVEGVD 144 (224)
T ss_pred HHHHCCCeEEEeEE
Confidence 99999999876553
No 112
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.34 E-value=5.7e-12 Score=105.77 Aligned_cols=95 Identities=24% Similarity=0.340 Sum_probs=74.4
Q ss_pred EEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCC
Q psy2395 402 LEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYI 481 (570)
Q Consensus 402 LDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~ 481 (570)
||+|||+|..+..+++. + +.+|+|+|+|+.+++.++++... ..+.+.++|+.+ ++.++++||+|+++--+.
T Consensus 1 LdiG~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~~~~~~~~------~~~~~~~~d~~~-l~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G-GASVTGIDISEEMLEQARKRLKN------EGVSFRQGDAED-LPFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T-TCEEEEEES-HHHHHHHHHHTTT------STEEEEESBTTS-SSS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHhcccc------cCchheeehHHh-Ccccccccccccccccee
Confidence 79999999999999988 2 58999999999999999998763 246699999865 466678999999953322
Q ss_pred CCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 482 PKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 482 ~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
. ++....+++++.+.|||||++++
T Consensus 72 ~-------------------------~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 H-------------------------LEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp G-------------------------SSHHHHHHHHHHHHEEEEEEEEE
T ss_pred e-------------------------ccCHHHHHHHHHHHcCcCeEEeC
Confidence 1 12458999999999999999985
No 113
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.34 E-value=1.2e-11 Score=124.13 Aligned_cols=99 Identities=15% Similarity=0.185 Sum_probs=78.7
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++... ..++++|+.+ ++..+++||+|++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~~--------~~~~~~d~~~-~~~~~~~fD~V~s 109 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDAA--------DHYLAGDIES-LPLATATFDLAWS 109 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCCC--------CCEEEcCccc-CcCCCCcEEEEEE
Confidence 4679999999999999988764 46899999999999999887531 4688999854 4444578999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
|.++.... ....++.++.++|+|||.+++..
T Consensus 110 ~~~l~~~~-------------------------d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 110 NLAVQWCG-------------------------NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred CchhhhcC-------------------------CHHHHHHHHHHHcCCCeEEEEEe
Confidence 87654221 23678899999999999998864
No 114
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.34 E-value=1.3e-11 Score=122.34 Aligned_cols=117 Identities=21% Similarity=0.261 Sum_probs=90.8
Q ss_pred HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc
Q psy2395 383 TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN 462 (570)
Q Consensus 383 t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~ 462 (570)
+..++..+... .++.+|||+|||+|+.++.++...+.+.+|+++|+++++++.|++|+..++ ...+++++.+|+.+
T Consensus 56 ~g~~L~~l~~~--~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g--l~~~i~~~~gda~~ 131 (234)
T PLN02781 56 EGLFLSMLVKI--MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG--VDHKINFIQSDALS 131 (234)
T ss_pred HHHHHHHHHHH--hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEccHHH
Confidence 33344444443 256799999999999999998876656899999999999999999999864 34579999999987
Q ss_pred ccccC-----CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 463 NLQNY-----KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 463 ~l~~~-----~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
.++.. .++||+|+.|.+- ..|..+++.+.++|+|||.+++.
T Consensus 132 ~L~~l~~~~~~~~fD~VfiDa~k----------------------------~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 132 ALDQLLNNDPKPEFDFAFVDADK----------------------------PNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred HHHHHHhCCCCCCCCEEEECCCH----------------------------HHHHHHHHHHHHhcCCCeEEEEE
Confidence 65421 3689999997431 24567788889999999998863
No 115
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=99.33 E-value=1e-11 Score=128.60 Aligned_cols=165 Identities=24% Similarity=0.292 Sum_probs=101.8
Q ss_pred CccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhc------CCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy2395 375 DVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYS------KNKIEIIATDISKFALKIAKKNAKKKLTK 448 (570)
Q Consensus 375 ~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~------~~~~~V~gvDis~~al~~A~~n~~~~~~~ 448 (570)
.+|+|+..+..|+.++. ..++.+|+|.+||+|.+.+.+.+.. ....+++|+|+++.++.+|+.|+..++..
T Consensus 27 ~~~TP~~i~~l~~~~~~---~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 27 QFYTPREIVDLMVKLLN---PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID 103 (311)
T ss_dssp GC---HHHHHHHHHHHT---T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH
T ss_pred eeehHHHHHHHHHhhhh---ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc
Confidence 35789888888888872 3456689999999999999887642 12579999999999999999998754321
Q ss_pred CCCCEEEEEcccccccccC-CCceeEEEECCCCCCCCCcc-cCCCCccccccccccccCCChHHHHHHHHHHhhccccCe
Q psy2395 449 YNIPIKFIKSNWYNNLQNY-KKLFNIIVANPPYIPKGDIH-LNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNG 526 (570)
Q Consensus 449 ~~~~v~~~~~D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~-~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG 526 (570)
.....+..+|.+...... ..+||+|++||||....... ......+|... .......+ ..++..+.+.|++||
T Consensus 104 -~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~Fi~~~l~~Lk~~G 177 (311)
T PF02384_consen 104 -NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKY---FPPKSNAE--YAFIEHALSLLKPGG 177 (311)
T ss_dssp -CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTC---SSSTTEHH--HHHHHHHHHTEEEEE
T ss_pred -cccccccccccccccccccccccccccCCCCcccccccccccccccccccc---CCCccchh--hhhHHHHHhhccccc
Confidence 123568899987644332 36899999999998762211 11111122111 11111222 347888889999999
Q ss_pred EEEEEEcCC------CHHHHHHHHHHCC
Q psy2395 527 LLLIEHGYN------QSNLVRKLLFKYG 548 (570)
Q Consensus 527 ~l~~~~~~~------~~~~l~~ll~~~G 548 (570)
.+.++++.. ....+++.|.+.+
T Consensus 178 ~~~~Ilp~~~L~~~~~~~~iR~~ll~~~ 205 (311)
T PF02384_consen 178 RAAIILPNGFLFSSSSEKKIRKYLLENG 205 (311)
T ss_dssp EEEEEEEHHHHHGSTHHHHHHHHHHHHE
T ss_pred ceeEEecchhhhccchHHHHHHHHHhhc
Confidence 998877642 2356777776544
No 116
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.33 E-value=2.5e-11 Score=124.28 Aligned_cols=125 Identities=19% Similarity=0.232 Sum_probs=93.3
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|..++.++.. +.+|+|+|+|+.+++.+++++..+ +.++++...|+..... +++||+|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~----~l~v~~~~~D~~~~~~--~~~fD~I~~ 190 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKE----NLNIRTGLYDINSASI--QEEYDFILS 190 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHc----CCceEEEEechhcccc--cCCccEEEE
Confidence 3459999999999999999975 369999999999999999998863 4468888999855322 478999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--------------CCHHHHHH
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------------NQSNLVRK 542 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------------~~~~~l~~ 542 (570)
+..++..+ .+....+++.+.++|+|||++++.... ....++.+
T Consensus 191 ~~vl~~l~-----------------------~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~ 247 (287)
T PRK12335 191 TVVLMFLN-----------------------RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKD 247 (287)
T ss_pred cchhhhCC-----------------------HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHH
Confidence 76543111 124578899999999999997654311 12456777
Q ss_pred HHHHCCCeeEEEE
Q psy2395 543 LLFKYGFSDIKSW 555 (570)
Q Consensus 543 ll~~~Gf~~i~~~ 555 (570)
++. +|.++...
T Consensus 248 ~~~--~~~i~~~~ 258 (287)
T PRK12335 248 YYQ--DWEIVKYN 258 (287)
T ss_pred HhC--CCEEEEEe
Confidence 775 48877653
No 117
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.32 E-value=4e-12 Score=109.14 Aligned_cols=98 Identities=20% Similarity=0.358 Sum_probs=73.9
Q ss_pred EEEECCcccHHHHHHHHhcCC--CcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEEC-
Q psy2395 401 LLEMGTGSGAIAIAIAIYSKN--KIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVAN- 477 (570)
Q Consensus 401 VLDlGcGtG~i~l~la~~~~~--~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~N- 477 (570)
|||+|||+|..+..++..++. ..+++|+|+|+.|++.++++... .+.+++|+++|+.+ ++...++||+|++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~----~~~~~~~~~~D~~~-l~~~~~~~D~v~~~~ 75 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE----DGPKVRFVQADARD-LPFSDGKFDLVVCSG 75 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH----TTTTSEEEESCTTC-HHHHSSSEEEEEE-T
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh----cCCceEEEECCHhH-CcccCCCeeEEEEcC
Confidence 799999999999999987622 37999999999999999999875 34479999999966 55445799999993
Q ss_pred CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCe
Q psy2395 478 PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNG 526 (570)
Q Consensus 478 PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG 526 (570)
..+... .-+....+++.+.++|+|||
T Consensus 76 ~~~~~~-----------------------~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 76 LSLHHL-----------------------SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TGGGGS-----------------------SHHHHHHHHHHHHHTEEEEE
T ss_pred CccCCC-----------------------CHHHHHHHHHHHHHHhCCCC
Confidence 211100 11356889999999999998
No 118
>KOG1271|consensus
Probab=99.31 E-value=3e-11 Score=110.98 Aligned_cols=154 Identities=16% Similarity=0.256 Sum_probs=108.0
Q ss_pred hHHHHHHHHHhhcC----C-CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEE
Q psy2395 382 ETELLVDLIVKKTF----E-KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFI 456 (570)
Q Consensus 382 ~t~~l~~~~~~~~~----~-~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~ 456 (570)
..+.+++|+..... . ...+|||+|||+|.+...|++.+- ....+|||.|+.++++|+..+++.+ ....|+|.
T Consensus 47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~--~~n~I~f~ 123 (227)
T KOG1271|consen 47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDG--FSNEIRFQ 123 (227)
T ss_pred HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcC--CCcceeEE
Confidence 34567777766532 2 334999999999999999998875 3569999999999999988887643 33349999
Q ss_pred EcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC
Q psy2395 457 KSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ 536 (570)
Q Consensus 457 ~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 536 (570)
+.|++++ ....++||+|+--..|-... +.+ + +..+. ....+..+.+.|+|||++++...+..
T Consensus 124 q~DI~~~-~~~~~qfdlvlDKGT~DAis---Ls~-d-----------~~~~r--~~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 124 QLDITDP-DFLSGQFDLVLDKGTLDAIS---LSP-D-----------GPVGR--LVVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred EeeccCC-cccccceeEEeecCceeeee---cCC-C-----------Ccccc--eeeehhhHhhccCCCcEEEEEecCcc
Confidence 9999886 33347899988643332100 000 0 00110 02234455678999999999888888
Q ss_pred HHHHHHHHHHCCCeeEEEEe
Q psy2395 537 SNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 537 ~~~l~~ll~~~Gf~~i~~~~ 556 (570)
..++.+.+...||......+
T Consensus 186 ~dELv~~f~~~~f~~~~tvp 205 (227)
T KOG1271|consen 186 KDELVEEFENFNFEYLSTVP 205 (227)
T ss_pred HHHHHHHHhcCCeEEEEeec
Confidence 89999999998888765554
No 119
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.31 E-value=5.2e-11 Score=125.18 Aligned_cols=151 Identities=17% Similarity=0.139 Sum_probs=106.9
Q ss_pred eeeeecCCccccc--hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy2395 368 LVLNITSDVLIPR--PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKK 445 (570)
Q Consensus 368 ~~~~v~~~~~~pr--~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~ 445 (570)
..|.++++.|.+. ..++.|++++.+.....+.+|||+|||+|.+++.+++.. .+|+|+|+++.|++.|++|+..|
T Consensus 166 ~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~ 242 (353)
T TIGR02143 166 FIYRQVENSFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAAN 242 (353)
T ss_pred EEEEECCCCcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHc
Confidence 5788888888754 356788888877653233579999999999999999765 48999999999999999999975
Q ss_pred cccCCCCEEEEEcccccccccC---------C------CceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHH
Q psy2395 446 LTKYNIPIKFIKSNWYNNLQNY---------K------KLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSS 510 (570)
Q Consensus 446 ~~~~~~~v~~~~~D~~~~l~~~---------~------~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~ 510 (570)
+. .+++|+++|+.+.+... . ..||+|+.|||.. | .
T Consensus 243 ~~---~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~-------------------------G--~ 292 (353)
T TIGR02143 243 NI---DNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRA-------------------------G--L 292 (353)
T ss_pred CC---CcEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCC-------------------------C--C
Confidence 32 25999999997654320 1 2389999999942 1 1
Q ss_pred HHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEEEE
Q psy2395 511 IKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 511 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
...+++.+. +|++++|+++.+.....-...|.+ ||+..++.
T Consensus 293 ~~~~l~~l~---~~~~ivYvsC~p~tlaRDl~~L~~-~Y~l~~v~ 333 (353)
T TIGR02143 293 DPDTCKLVQ---AYERILYISCNPETLKANLEQLSE-THRVERFA 333 (353)
T ss_pred cHHHHHHHH---cCCcEEEEEcCHHHHHHHHHHHhc-CcEEEEEE
Confidence 134444443 378999998877554433344443 47664443
No 120
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.31 E-value=8.9e-11 Score=114.79 Aligned_cols=100 Identities=21% Similarity=0.211 Sum_probs=78.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|+++..+++.. .+|+++|+++.+++.|++|+..++ -.++++..+|+.+.++. .++||+|+
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~-~~~fD~I~ 149 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLG---LHNVSVRHGDGWKGWPA-YAPFDRIL 149 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCC---CCceEEEECCcccCCCc-CCCcCEEE
Confidence 467899999999999999888764 389999999999999999998742 12499999998765442 36899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
++.+.. .+.+.+.+.|+|||.+++.++
T Consensus 150 ~~~~~~-------------------------------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 150 VTAAAP-------------------------------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EccCch-------------------------------hhhHHHHHhcCCCcEEEEEEc
Confidence 975321 122345678999999998776
No 121
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.30 E-value=5.1e-11 Score=112.01 Aligned_cols=144 Identities=18% Similarity=0.313 Sum_probs=105.5
Q ss_pred cccCeeeeecCCccccchhHHHHHHHHHhhcCC---CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 364 EFYGLVLNITSDVLIPRPETELLVDLIVKKTFE---KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 364 ~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~~---~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.|.|..+.+.++ -.-||.+..+-+.+...+.+ .+.++||+++|||.+++..+.++ ...++.||.|..++...++
T Consensus 8 ~~kgr~L~~p~~-~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~ 84 (187)
T COG0742 8 KYKGRKLKTPDG-PGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKE 84 (187)
T ss_pred cccCCcccCCCC-CCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHH
Confidence 455666666554 33567777777776665432 57899999999999999999887 5799999999999999999
Q ss_pred HHHhhcccCCCCEEEEEcccccccccCCC--ceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHH--
Q psy2395 441 NAKKKLTKYNIPIKFIKSNWYNNLQNYKK--LFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVK-- 516 (570)
Q Consensus 441 n~~~~~~~~~~~v~~~~~D~~~~l~~~~~--~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~-- 516 (570)
|++.. +...++.++..|+...+..... +||+|+.||||... +-.....+.
T Consensus 85 N~~~l--~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~------------------------l~~~~~~~~~~ 138 (187)
T COG0742 85 NLKAL--GLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKG------------------------LLDKELALLLL 138 (187)
T ss_pred HHHHh--CCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccc------------------------hhhHHHHHHHH
Confidence 99863 2335799999999865544444 49999999999721 110011111
Q ss_pred HHhhccccCeEEEEEEcCCC
Q psy2395 517 NASKYLVKNGLLLIEHGYNQ 536 (570)
Q Consensus 517 ~~~~~LkpgG~l~~~~~~~~ 536 (570)
.-...|+|+|.++++.....
T Consensus 139 ~~~~~L~~~~~iv~E~~~~~ 158 (187)
T COG0742 139 EENGWLKPGALIVVEHDKDV 158 (187)
T ss_pred HhcCCcCCCcEEEEEeCCCc
Confidence 23567999999999987653
No 122
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.30 E-value=9.4e-11 Score=121.71 Aligned_cols=129 Identities=18% Similarity=0.173 Sum_probs=94.7
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
.+.+|||+|||+|.++..++..++ ..|+|+|.|+.++..++...... ....++.++.+|+.+ ++. .++||+|+|
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~--~~~~~i~~~~~d~e~-lp~-~~~FD~V~s 195 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLL--GNDQRAHLLPLGIEQ-LPA-LKAFDTVFS 195 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhc--CCCCCeEEEeCCHHH-CCC-cCCcCEEEE
Confidence 567999999999999999998763 47999999999987655433321 123469999999854 443 578999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE---cC-------------------
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH---GY------------------- 534 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~---~~------------------- 534 (570)
+--.+.. .....+++.+++.|+|||.++++. ..
T Consensus 196 ~~vl~H~-------------------------~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~ 250 (322)
T PRK15068 196 MGVLYHR-------------------------RSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVY 250 (322)
T ss_pred CChhhcc-------------------------CCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccce
Confidence 5321111 123678899999999999998752 10
Q ss_pred --CCHHHHHHHHHHCCCeeEEEEe
Q psy2395 535 --NQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 535 --~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
.....+..+|.++||+.+++..
T Consensus 251 ~lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 251 FIPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred eCCCHHHHHHHHHHcCCceEEEEe
Confidence 0245688999999999987763
No 123
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.29 E-value=7.9e-12 Score=117.93 Aligned_cols=108 Identities=17% Similarity=0.155 Sum_probs=87.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
....+|.|+|||+|+.+..|++++| .+.|+|+|-|++|++.|+.... +++|..+|+.+..+ ..++|+++
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rlp--------~~~f~~aDl~~w~p--~~~~dllf 97 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRLP--------DATFEEADLRTWKP--EQPTDLLF 97 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhCC--------CCceecccHhhcCC--CCccchhh
Confidence 4677999999999999999999997 7999999999999999965543 48999999966444 36899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHH
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNL 539 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 539 (570)
+|..+..-+ .+..++......|.|||.+.+.++.+..+.
T Consensus 98 aNAvlqWlp-------------------------dH~~ll~rL~~~L~Pgg~LAVQmPdN~dep 136 (257)
T COG4106 98 ANAVLQWLP-------------------------DHPELLPRLVSQLAPGGVLAVQMPDNLDEP 136 (257)
T ss_pred hhhhhhhcc-------------------------ccHHHHHHHHHhhCCCceEEEECCCccCch
Confidence 997554221 225677777789999999999998765443
No 124
>PRK00811 spermidine synthase; Provisional
Probab=99.28 E-value=1e-10 Score=119.37 Aligned_cols=136 Identities=16% Similarity=0.315 Sum_probs=96.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhccc--CCCCEEEEEcccccccccCCCceeE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTK--YNIPIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~--~~~~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
+++.+||++|||+|.++..+++.. ...+|++||+|+.+++.|++++...... .+.+++++.+|+...+....++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 456799999999999999998753 2468999999999999999988643111 2457999999998766544578999
Q ss_pred EEECC--CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--CCHHHHH---HHHHH
Q psy2395 474 IVANP--PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--NQSNLVR---KLLFK 546 (570)
Q Consensus 474 Iv~NP--Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~l~---~ll~~ 546 (570)
|++|. |+.+.. .+ .-..+++.+.+.|+|||.+++..+. .....+. +.+++
T Consensus 154 Ii~D~~dp~~~~~----------------------~l-~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~ 210 (283)
T PRK00811 154 IIVDSTDPVGPAE----------------------GL-FTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKE 210 (283)
T ss_pred EEECCCCCCCchh----------------------hh-hHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 99984 432110 00 2367888899999999999885432 2333333 33444
Q ss_pred CCCeeEEEEe
Q psy2395 547 YGFSDIKSWR 556 (570)
Q Consensus 547 ~Gf~~i~~~~ 556 (570)
. |..+..+.
T Consensus 211 ~-F~~v~~~~ 219 (283)
T PRK00811 211 V-FPIVRPYQ 219 (283)
T ss_pred H-CCCEEEEE
Confidence 3 66665554
No 125
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.28 E-value=4e-11 Score=115.00 Aligned_cols=136 Identities=14% Similarity=0.160 Sum_probs=94.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc-------ccCC
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL-------QNYK 468 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l-------~~~~ 468 (570)
.++.+|||+|||+|.++..++.......+|+|+|+|+.+ . ..++.++++|+.+.. ....
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~------~~~i~~~~~d~~~~~~~~~l~~~~~~ 96 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P------IENVDFIRGDFTDEEVLNKIRERVGD 96 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c------CCCceEEEeeCCChhHHHHHHHHhCC
Confidence 567899999999999999998876445789999999964 1 123778888886521 1123
Q ss_pred CceeEEEECCC--CCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc-CCCHHHHHHHHH
Q psy2395 469 KLFNIIVANPP--YIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG-YNQSNLVRKLLF 545 (570)
Q Consensus 469 ~~fD~Iv~NPP--y~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~l~~ll~ 545 (570)
++||+|++|++ +...... ......+....++..+.++|+|||.+++++. ......+...++
T Consensus 97 ~~~D~V~~~~~~~~~g~~~~----------------~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~ 160 (188)
T TIGR00438 97 DKVDVVMSDAAPNISGYWDI----------------DHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELR 160 (188)
T ss_pred CCccEEEcCCCCCCCCCccc----------------cHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHH
Confidence 57999999852 2111000 0000112346889999999999999998653 345556666665
Q ss_pred HCCCeeEEEEecCCCCc
Q psy2395 546 KYGFSDIKSWRDLSGIE 562 (570)
Q Consensus 546 ~~Gf~~i~~~~D~~g~~ 562 (570)
. +|..+.+.+|+.|++
T Consensus 161 ~-~~~~~~~~~~~~~~~ 176 (188)
T TIGR00438 161 K-LFEKVKVTKPQASRK 176 (188)
T ss_pred h-hhceEEEeCCCCCCc
Confidence 5 488899999998876
No 126
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.28 E-value=4.5e-11 Score=119.60 Aligned_cols=105 Identities=19% Similarity=0.283 Sum_probs=86.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
.+++.+|||||||.|.+++.+|+.+ +.+|+|+++|+++.+.+++.+...+ ...+++++..|..+. .++||.|
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~g--l~~~v~v~l~d~rd~----~e~fDrI 141 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARG--LEDNVEVRLQDYRDF----EEPFDRI 141 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcC--CCcccEEEecccccc----cccccee
Confidence 4789999999999999999999987 6899999999999999999988754 445799999998543 2569999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
||=--|- .-|.+.+..+++.+.++|+|||.+++
T Consensus 142 vSvgmfE-----------------------hvg~~~~~~ff~~~~~~L~~~G~~ll 174 (283)
T COG2230 142 VSVGMFE-----------------------HVGKENYDDFFKKVYALLKPGGRMLL 174 (283)
T ss_pred eehhhHH-----------------------HhCcccHHHHHHHHHhhcCCCceEEE
Confidence 9922111 11335678999999999999999876
No 127
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.28 E-value=5.2e-11 Score=118.05 Aligned_cols=130 Identities=19% Similarity=0.260 Sum_probs=100.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc-ccc-cCCCcee
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN-NLQ-NYKKLFN 472 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~-~l~-~~~~~fD 472 (570)
..++.+|||.|+|||.++.+|++...+..+|+.+|+.++.++.|++|++.++ ...++++.+.|+.+ ... .....||
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g--l~~~v~~~~~Dv~~~g~~~~~~~~~D 115 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG--LDDNVTVHHRDVCEEGFDEELESDFD 115 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT--CCTTEEEEES-GGCG--STT-TTSEE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC--CCCCceeEecceecccccccccCccc
Confidence 3689999999999999999999877667899999999999999999999864 44579999999964 231 1236799
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcc-ccCeEEEEEEcC-CCHHHHHHHHHHCCCe
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYL-VKNGLLLIEHGY-NQSNLVRKLLFKYGFS 550 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~L-kpgG~l~~~~~~-~~~~~l~~ll~~~Gf~ 550 (570)
.|+.|.| +|+ ..+..+.+.| ++||++++-.|. +|...+.+.|++.||.
T Consensus 116 avfLDlp----------------~Pw--------------~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~ 165 (247)
T PF08704_consen 116 AVFLDLP----------------DPW--------------EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFT 165 (247)
T ss_dssp EEEEESS----------------SGG--------------GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEE
T ss_pred EEEEeCC----------------CHH--------------HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCe
Confidence 9999876 232 3455677789 899999887765 7888889999999999
Q ss_pred eEEEEe
Q psy2395 551 DIKSWR 556 (570)
Q Consensus 551 ~i~~~~ 556 (570)
.++++.
T Consensus 166 ~i~~~E 171 (247)
T PF08704_consen 166 DIETVE 171 (247)
T ss_dssp EEEEEE
T ss_pred eeEEEE
Confidence 887654
No 128
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.27 E-value=2.4e-11 Score=117.95 Aligned_cols=107 Identities=18% Similarity=0.277 Sum_probs=76.1
Q ss_pred ecCcccccCeeeeecCCccccchhHHHHHHHHHhh------cCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCH
Q psy2395 359 IIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKK------TFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISK 432 (570)
Q Consensus 359 i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~------~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~ 432 (570)
+++...||+-.| ...+++|..++.++...+.. ..+++.+|||+|||+|.++..++...+ +.+++|+|+|+
T Consensus 2 ~~~~~~fw~~~~---g~~~~~rn~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~ 77 (204)
T TIGR03587 2 KTEQEQFWAGEF---GKEYIDRNSRQSLVAAKLAMFARALNRLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINE 77 (204)
T ss_pred cchHHHHhcCcc---cchhhhccccHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCH
Confidence 456667787766 22366665444332222211 124567999999999999999988754 57999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCC
Q psy2395 433 FALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPP 479 (570)
Q Consensus 433 ~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPP 479 (570)
.|++.|+++.. ++.+.++|+.+ +..+++||+|+++-.
T Consensus 78 ~~l~~A~~~~~--------~~~~~~~d~~~--~~~~~sfD~V~~~~v 114 (204)
T TIGR03587 78 YAVEKAKAYLP--------NINIIQGSLFD--PFKDNFFDLVLTKGV 114 (204)
T ss_pred HHHHHHHhhCC--------CCcEEEeeccC--CCCCCCEEEEEECCh
Confidence 99999987643 26688899876 333579999999754
No 129
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.27 E-value=1.2e-10 Score=120.04 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=76.3
Q ss_pred cCeeeeecCCccccchhHHHHHHHHHhhcC----CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 366 YGLVLNITSDVLIPRPETELLVDLIVKKTF----EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 366 ~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~----~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
|+....++...+.+++..+.+++.++..+. .++.+|||+|||+|.+++.+++. +.+|+|+|+|+.|++.|+++
T Consensus 109 y~~~d~v~~~~l~~~~~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~ 185 (315)
T PLN02585 109 YGETDEVNKVQLDIRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERR 185 (315)
T ss_pred cCCccccCceeeecccChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHH
Confidence 344444455566666666655555554432 24679999999999999999975 36899999999999999999
Q ss_pred HHhhccc--CCCCEEEEEcccccccccCCCceeEEEECCC
Q psy2395 442 AKKKLTK--YNIPIKFIKSNWYNNLQNYKKLFNIIVANPP 479 (570)
Q Consensus 442 ~~~~~~~--~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPP 479 (570)
+...+.. ...++.|..+|+.+ + +++||+|+|.-.
T Consensus 186 ~~~~~~~~~~~~~~~f~~~Dl~~-l---~~~fD~Vv~~~v 221 (315)
T PLN02585 186 AKEALAALPPEVLPKFEANDLES-L---SGKYDTVTCLDV 221 (315)
T ss_pred HHhcccccccccceEEEEcchhh-c---CCCcCEEEEcCE
Confidence 8753110 12357899999743 2 368999998643
No 130
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.26 E-value=5.9e-11 Score=120.01 Aligned_cols=154 Identities=23% Similarity=0.323 Sum_probs=101.9
Q ss_pred Ceeeeec------CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 367 GLVLNIT------SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 367 ~~~~~v~------~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
|..|.++ .|.|.-..+++.++... ..+.+|||++|-||.+++.++..+ ..+|++||.|..+++.|++
T Consensus 92 gl~f~v~l~~gqktGlFlDqR~nR~~v~~~-----~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~ 164 (286)
T PF10672_consen 92 GLKFRVDLTDGQKTGLFLDQRENRKWVRKY-----AKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKE 164 (286)
T ss_dssp TEEEEEESSSSSSTSS-GGGHHHHHHHHHH-----CTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHH
T ss_pred CEEEEEEcCCCCcceEcHHHHhhHHHHHHH-----cCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHH
Confidence 4555544 55565555566555443 246799999999999999988654 4589999999999999999
Q ss_pred HHHhhcccCCCCEEEEEccccccccc--CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHH
Q psy2395 441 NAKKKLTKYNIPIKFIKSNWYNNLQN--YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNA 518 (570)
Q Consensus 441 n~~~~~~~~~~~v~~~~~D~~~~l~~--~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~ 518 (570)
|+..|+.. ..+++|+++|+++.+.. ..++||+||+|||-+..... .+ ...|..++..+
T Consensus 165 N~~lNg~~-~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~-------------~~------~~~y~~L~~~a 224 (286)
T PF10672_consen 165 NAALNGLD-LDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKF-------------DL------ERDYKKLLRRA 224 (286)
T ss_dssp HHHHTT-C-CTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTC-------------EH------HHHHHHHHHHH
T ss_pred HHHHcCCC-ccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHH-------------HH------HHHHHHHHHHH
Confidence 99987532 24699999999886542 23689999999995432210 00 13578899999
Q ss_pred hhccccCeEEEEEEcCC--CHHHHHHHHHHC
Q psy2395 519 SKYLVKNGLLLIEHGYN--QSNLVRKLLFKY 547 (570)
Q Consensus 519 ~~~LkpgG~l~~~~~~~--~~~~l~~ll~~~ 547 (570)
.++|+|||.+++..... ..+.+.+.+.+.
T Consensus 225 ~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~ 255 (286)
T PF10672_consen 225 MKLLKPGGLLLTCSCSHHISPDFLLEAVAEA 255 (286)
T ss_dssp HHTEEEEEEEEEEE--TTS-HHHHHHHHHHH
T ss_pred HHhcCCCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 99999999987755332 234455555543
No 131
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.26 E-value=5e-11 Score=116.45 Aligned_cols=143 Identities=10% Similarity=-0.013 Sum_probs=91.4
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhc---------ccCCCCEE
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKL---------TKYNIPIK 454 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~---------~~~~~~v~ 454 (570)
..+++++.....+++.+|||+|||.|..++.||.+ +.+|+|+|+|+.+++.+........ .....+++
T Consensus 21 ~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 97 (213)
T TIGR03840 21 PLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIE 97 (213)
T ss_pred HHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceE
Confidence 34444443322235679999999999999999965 4799999999999998643221100 00134699
Q ss_pred EEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-c
Q psy2395 455 FIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-G 533 (570)
Q Consensus 455 ~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~ 533 (570)
++++|+++......++||.|+-.--++..+ .+....+++.+.+.|+|||++++++ .
T Consensus 98 ~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~-----------------------~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 98 IFCGDFFALTAADLGPVDAVYDRAALIALP-----------------------EEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred EEEccCCCCCcccCCCcCEEEechhhccCC-----------------------HHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 999999875432235799988743332110 1234678999999999999765532 1
Q ss_pred C-----------CCHHHHHHHHHHCCCeeEE
Q psy2395 534 Y-----------NQSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 534 ~-----------~~~~~l~~ll~~~Gf~~i~ 553 (570)
. -...++.+++.. +|.+..
T Consensus 155 ~~~~~~~gpp~~~~~~eL~~~f~~-~~~i~~ 184 (213)
T TIGR03840 155 YDQSEMAGPPFSVSPAEVEALYGG-HYEIEL 184 (213)
T ss_pred cCCCCCCCcCCCCCHHHHHHHhcC-CceEEE
Confidence 1 124567776653 455433
No 132
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.1e-10 Score=124.97 Aligned_cols=151 Identities=17% Similarity=0.206 Sum_probs=118.5
Q ss_pred CeeeeecCCccccc--hhHHHHHHHHHhhcCC-CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 367 GLVLNITSDVLIPR--PETELLVDLIVKKTFE-KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 367 ~~~~~v~~~~~~pr--~~t~~l~~~~~~~~~~-~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~ 443 (570)
+..|.++++.|++. ..++.|+++++++... ++.++||+.||.|.+++.+|+. ..+|+|+|+++++++.|++|++
T Consensus 260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~ 336 (432)
T COG2265 260 GVSFQISPRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAA 336 (432)
T ss_pred ceEEEeCCCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHH
Confidence 57788888777766 5788999999888653 5679999999999999999955 4699999999999999999999
Q ss_pred hhcccCCCCEEEEEcccccccccCC--CceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhc
Q psy2395 444 KKLTKYNIPIKFIKSNWYNNLQNYK--KLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKY 521 (570)
Q Consensus 444 ~~~~~~~~~v~~~~~D~~~~l~~~~--~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~ 521 (570)
.|+ ..+++|..+|+.+...... ..||.||.|||=- |++ ..+++.+. .
T Consensus 337 ~n~---i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~-------------------------G~~--~~~lk~l~-~ 385 (432)
T COG2265 337 ANG---IDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRA-------------------------GAD--REVLKQLA-K 385 (432)
T ss_pred HcC---CCcEEEEeCCHHHHhhhccccCCCCEEEECCCCC-------------------------CCC--HHHHHHHH-h
Confidence 863 2349999999977655432 4799999999832 222 34444444 4
Q ss_pred cccCeEEEEEEcCCCHHHHHHHHHHCCCee
Q psy2395 522 LVKNGLLLIEHGYNQSNLVRKLLFKYGFSD 551 (570)
Q Consensus 522 LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~ 551 (570)
++|..++++.+.+.....-...|.+.||.+
T Consensus 386 ~~p~~IvYVSCNP~TlaRDl~~L~~~gy~i 415 (432)
T COG2265 386 LKPKRIVYVSCNPATLARDLAILASTGYEI 415 (432)
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHhCCeEE
Confidence 788899999888777776777788888864
No 133
>PTZ00146 fibrillarin; Provisional
Probab=99.26 E-value=2.9e-10 Score=114.67 Aligned_cols=130 Identities=19% Similarity=0.185 Sum_probs=92.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc--ccCCCcee
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL--QNYKKLFN 472 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l--~~~~~~fD 472 (570)
..++.+|||+|||+|.++..++....+...|+|+|+++.+++.....+.. ..++.++.+|+.... ..+.++||
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----r~NI~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----RPNIVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCCEEEECCccChhhhhcccCCCC
Confidence 35778999999999999999998864456899999999877555444432 235889999986532 11235799
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC------CHHHH----HH
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN------QSNLV----RK 542 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~------~~~~l----~~ 542 (570)
+|+++-.. | +..+.++.++.++|||||.|++.+... ..+.+ .+
T Consensus 205 vV~~Dva~----------------p-----------dq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~ 257 (293)
T PTZ00146 205 VIFADVAQ----------------P-----------DQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQ 257 (293)
T ss_pred EEEEeCCC----------------c-----------chHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHH
Confidence 99997531 0 123556678899999999999854321 12222 47
Q ss_pred HHHHCCCeeEEEEe
Q psy2395 543 LLFKYGFSDIKSWR 556 (570)
Q Consensus 543 ll~~~Gf~~i~~~~ 556 (570)
.|++.||..++...
T Consensus 258 ~L~~~GF~~~e~v~ 271 (293)
T PTZ00146 258 KLKKEGLKPKEQLT 271 (293)
T ss_pred HHHHcCCceEEEEe
Confidence 78999999877653
No 134
>PRK06922 hypothetical protein; Provisional
Probab=99.25 E-value=4.8e-11 Score=131.08 Aligned_cols=120 Identities=20% Similarity=0.187 Sum_probs=89.2
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc-cCCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ-NYKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fD~Iv 475 (570)
++.+|||+|||+|.++..++...+ +.+|+|+|+|+.|++.|+++... .+.++.++++|+.+... ..+++||+|+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~----~g~~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQN----EGRSWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhh----cCCCeEEEEcchHhCccccCCCCEEEEE
Confidence 467999999999999999988775 68999999999999999998764 34568899999865221 2347899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
+|++++.-.. |-| ..+...+......+++++.+.|||||.+++..+
T Consensus 493 sn~vLH~L~s---------yIp---~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 493 YSSILHELFS---------YIE---YEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EchHHHhhhh---------hcc---cccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9987652110 000 001111234668999999999999999988643
No 135
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.25 E-value=1.1e-10 Score=115.56 Aligned_cols=116 Identities=23% Similarity=0.261 Sum_probs=86.2
Q ss_pred HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc
Q psy2395 383 TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN 462 (570)
Q Consensus 383 t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~ 462 (570)
...+++.+.......+.+|||+|||+|.++..++..++ ..+++|+|+++.++..++.+.. .++.++.+|+.+
T Consensus 20 ~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~~ 91 (240)
T TIGR02072 20 AKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-------ENVQFICGDAEK 91 (240)
T ss_pred HHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-------CCCeEEecchhh
Confidence 34444444332223457999999999999999998876 5789999999999999987653 257899999865
Q ss_pred ccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 463 NLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 463 ~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
. +..+++||+|+++-.+.... ....++..+.+.|+|||.+++..
T Consensus 92 ~-~~~~~~fD~vi~~~~l~~~~-------------------------~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 92 L-PLEDSSFDLIVSNLALQWCD-------------------------DLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred C-CCCCCceeEEEEhhhhhhcc-------------------------CHHHHHHHHHHHcCCCcEEEEEe
Confidence 3 33357899999975433211 23678899999999999998854
No 136
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.24 E-value=5.7e-11 Score=111.98 Aligned_cols=78 Identities=18% Similarity=0.138 Sum_probs=64.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++... .+|+|+|+|+.+++.+++|+.. ..+++++++|+.+... .+..||.|+
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~-----~~~v~ii~~D~~~~~~-~~~~~d~vi 82 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAA-----ADNLTVIHGDALKFDL-PKLQPYKVV 82 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhcc-----CCCEEEEECchhcCCc-cccCCCEEE
Confidence 456799999999999999999763 6899999999999999999853 3468999999976432 234699999
Q ss_pred ECCCCCC
Q psy2395 476 ANPPYIP 482 (570)
Q Consensus 476 ~NPPy~~ 482 (570)
+||||..
T Consensus 83 ~n~Py~~ 89 (169)
T smart00650 83 GNLPYNI 89 (169)
T ss_pred ECCCccc
Confidence 9999973
No 137
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=99.24 E-value=9.3e-11 Score=130.01 Aligned_cols=171 Identities=21% Similarity=0.288 Sum_probs=108.7
Q ss_pred CCccccchhHHHHHHHHHhhcC----CCCCEEEEECCcccHHHHHHHHhcCC-------CcEEEEEeCCHHHHHHHHHHH
Q psy2395 374 SDVLIPRPETELLVDLIVKKTF----EKKIKLLEMGTGSGAIAIAIAIYSKN-------KIEIIATDISKFALKIAKKNA 442 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~----~~~~~VLDlGcGtG~i~l~la~~~~~-------~~~V~gvDis~~al~~A~~n~ 442 (570)
..+|+|...++.|++.+..... ..+.+|||+|||+|.+.+.++...+. ...++|+|+++.++..|+.|+
T Consensus 4 GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 4 GTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 3568899999999998865322 13569999999999999999876521 257899999999999999998
Q ss_pred HhhcccCCCCEEEEEccccccc----ccCCCceeEEEECCCCCCCCCcc-cCC----CCc-cc--------------ccc
Q psy2395 443 KKKLTKYNIPIKFIKSNWYNNL----QNYKKLFNIIVANPPYIPKGDIH-LNK----GDL-RF--------------EPI 498 (570)
Q Consensus 443 ~~~~~~~~~~v~~~~~D~~~~l----~~~~~~fD~Iv~NPPy~~~~~~~-~~~----~~~-~~--------------ep~ 498 (570)
...+ ...+.+.++|..... ....+.||+||+||||....... ... ... .| -+.
T Consensus 84 ~~~~---~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (524)
T TIGR02987 84 GEFA---LLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPY 160 (524)
T ss_pred hhcC---CCCceeeecccccccccccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcch
Confidence 7632 223556666654321 11125899999999998643211 000 000 00 000
Q ss_pred cc-ccccCCChHHHHHH-HHHHhhccccCeEEEEEEcC-----CCHHHHHHHHHHC
Q psy2395 499 NA-LTDYSNGLSSIKEI-VKNASKYLVKNGLLLIEHGY-----NQSNLVRKLLFKY 547 (570)
Q Consensus 499 ~a-l~~~~~gl~~~~~~-l~~~~~~LkpgG~l~~~~~~-----~~~~~l~~ll~~~ 547 (570)
.. .....+....|..+ ++.+.++|++||++.+++|. .....+++.+.+.
T Consensus 161 ~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G~~~~I~P~s~l~~~~~~~lR~~ll~~ 216 (524)
T TIGR02987 161 SDPIRKYAGVGTEYSRVFEEISLEIANKNGYVSIISPASWLGDKTGENLREYIFNN 216 (524)
T ss_pred hhhhcccCCcccHHHHHHHHHHHHhcCCCCEEEEEEChHHhcCccHHHHHHHHHhC
Confidence 00 00001111245554 46789999999999998876 2345677766553
No 138
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.23 E-value=2.9e-10 Score=107.27 Aligned_cols=140 Identities=18% Similarity=0.235 Sum_probs=95.3
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
.-.++||+|||.|.++..||.++ .+++++|+|+.+++.|++.... ..+|+|.++|+.+..+ .++||+||.
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~-----~~~V~~~~~dvp~~~P--~~~FDLIV~ 112 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG-----LPHVEWIQADVPEFWP--EGRFDLIVL 112 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT-----SS-EEEEEE
T ss_pred ccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC-----CCCeEEEECcCCCCCC--CCCeeEEEE
Confidence 34689999999999999999775 5899999999999999999873 3469999999977654 489999998
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC----------CHHHHHHHHHH
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN----------QSNLVRKLLFK 546 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~----------~~~~l~~ll~~ 546 (570)
.- +..| -+..+.++.++..+...|+|||.+++.+..+ -.+.+.++|.+
T Consensus 113 SE-------------VlYY---------L~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~ 170 (201)
T PF05401_consen 113 SE-------------VLYY---------LDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQE 170 (201)
T ss_dssp ES--------------GGG---------SSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHH
T ss_pred eh-------------HhHc---------CCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHH
Confidence 31 1111 1223456788999999999999999865321 24667777776
Q ss_pred CCCeeEEEEe--cCCCCceEEEEEe
Q psy2395 547 YGFSDIKSWR--DLSGIERVTQGKI 569 (570)
Q Consensus 547 ~Gf~~i~~~~--D~~g~~R~~~~~~ 569 (570)
. +..|+... .-.-.+-++++++
T Consensus 171 ~-~~~~~~~~~~~~~~~~~~~~~~~ 194 (201)
T PF05401_consen 171 H-LTEVERVECRGGSPNEDCLLARF 194 (201)
T ss_dssp H-SEEEEEEEEE-SSTTSEEEEEEE
T ss_pred H-hhheeEEEEcCCCCCCceEeeee
Confidence 4 66655432 3344456666664
No 139
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.23 E-value=2.9e-11 Score=115.28 Aligned_cols=139 Identities=23% Similarity=0.328 Sum_probs=108.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCC-CceeEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYK-KLFNII 474 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~-~~fD~I 474 (570)
+.+.+|||.|+|-|+.++..++++ ..+|+.+|.||..+++|+-|-...++ ....+.++.||+.+....++ .+||+|
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rG--A~~VitvEkdp~VLeLa~lNPwSr~l-~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERG--AIHVITVEKDPNVLELAKLNPWSREL-FEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcC--CcEEEEEeeCCCeEEeeccCCCCccc-cccccEEecccHHHHHhcCCccccceE
Confidence 468899999999999999999876 35999999999999999999764322 22368999999988776554 679999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC--------CHHHHHHHHHH
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN--------QSNLVRKLLFK 546 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~--------~~~~l~~ll~~ 546 (570)
+-+||-++.. +. -.-..|..++++.|+|||.++..+|.. -...+.+.|++
T Consensus 210 iHDPPRfS~A------------------ge----LYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~ 267 (287)
T COG2521 210 IHDPPRFSLA------------------GE----LYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRR 267 (287)
T ss_pred eeCCCccchh------------------hh----HhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHh
Confidence 9999965322 11 012467778888999999999877642 35678899999
Q ss_pred CCCeeEEEEecCC
Q psy2395 547 YGFSDIKSWRDLS 559 (570)
Q Consensus 547 ~Gf~~i~~~~D~~ 559 (570)
.||..++..+...
T Consensus 268 vGF~~v~~~~~~~ 280 (287)
T COG2521 268 VGFEVVKKVREAL 280 (287)
T ss_pred cCceeeeeehhcc
Confidence 9999887765443
No 140
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.23 E-value=3.3e-10 Score=112.30 Aligned_cols=128 Identities=13% Similarity=0.168 Sum_probs=96.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++.. .+++++|+++.+++.|++++.. .+.++.+..+|+.+......++||+|+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~~fD~Ii 119 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALE----SGLKIDYRQTTAEELAAEHPGQFDVVT 119 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHH----cCCceEEEecCHHHhhhhcCCCccEEE
Confidence 357799999999999999888653 6899999999999999999875 234678888888554322347899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC---------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------------------- 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------------------- 534 (570)
++..+.... ....+++.+.+.|+|||.+++....
T Consensus 120 ~~~~l~~~~-------------------------~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (233)
T PRK05134 120 CMEMLEHVP-------------------------DPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLP 174 (233)
T ss_pred EhhHhhccC-------------------------CHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcC
Confidence 964332111 2257788999999999999876421
Q ss_pred ---------CCHHHHHHHHHHCCCeeEEEE
Q psy2395 535 ---------NQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 535 ---------~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
...+++.+++.++||..+...
T Consensus 175 ~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 175 KGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred cccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 123568889999999988664
No 141
>PLN02476 O-methyltransferase
Probab=99.23 E-value=1.2e-10 Score=117.23 Aligned_cols=120 Identities=12% Similarity=0.189 Sum_probs=96.6
Q ss_pred chhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcc
Q psy2395 380 RPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459 (570)
Q Consensus 380 r~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D 459 (570)
.|+...+...+... .++.+|||+|||+|+.++.+|...+++.+|+++|.++++++.|++|+++.+ ...+++++.||
T Consensus 103 ~~~~g~lL~~L~~~--~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG--l~~~I~li~Gd 178 (278)
T PLN02476 103 SPDQAQLLAMLVQI--LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG--VSHKVNVKHGL 178 (278)
T ss_pred CHHHHHHHHHHHHh--cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcC
Confidence 45666666666554 356799999999999999999876656789999999999999999999864 34579999999
Q ss_pred cccccccC-----CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 460 WYNNLQNY-----KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 460 ~~~~l~~~-----~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
+.+.++.. .++||+||.+++- ..|..+++.+.++|+|||.+++.
T Consensus 179 A~e~L~~l~~~~~~~~FD~VFIDa~K----------------------------~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 179 AAESLKSMIQNGEGSSYDFAFVDADK----------------------------RMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred HHHHHHHHHhcccCCCCCEEEECCCH----------------------------HHHHHHHHHHHHhcCCCcEEEEe
Confidence 98866532 2589999997641 25678888889999999999873
No 142
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.23 E-value=1.2e-10 Score=117.92 Aligned_cols=114 Identities=18% Similarity=0.283 Sum_probs=80.7
Q ss_pred HHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc
Q psy2395 387 VDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ 465 (570)
Q Consensus 387 ~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~ 465 (570)
++.+.+.+ .+++.+|||||||.|.+++.+|+.+ +++|+|+.+|++..+.|++.+...+ ...++++...|..+ ++
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~g--l~~~v~v~~~D~~~-~~ 125 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAG--LEDRVEVRLQDYRD-LP 125 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCST--SSSTEEEEES-GGG---
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEeeccc-cC
Confidence 34444432 3688999999999999999999987 5899999999999999999998753 34579999999854 32
Q ss_pred cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 466 NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 466 ~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
.+||.|++--.+ ..-|...+..+++.+.++|+|||.+++.
T Consensus 126 ---~~fD~IvSi~~~-----------------------Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 126 ---GKFDRIVSIEMF-----------------------EHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp ----S-SEEEEESEG-----------------------GGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred ---CCCCEEEEEech-----------------------hhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 489999992110 0113346789999999999999999863
No 143
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.22 E-value=1.7e-10 Score=119.15 Aligned_cols=103 Identities=18% Similarity=0.279 Sum_probs=78.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++..+....|+|+|+++.+++.|++|+..++ -.++.++++|+.+.... ..+||+|+
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g---~~nV~~i~gD~~~~~~~-~~~fD~Ii 154 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG---IENVIFVCGDGYYGVPE-FAPYDVIF 154 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEeCChhhcccc-cCCccEEE
Confidence 467899999999999999999876433579999999999999999998742 23589999998665433 25799999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
++... ..+...+.+.|+|||.+++..+
T Consensus 155 ~~~g~-------------------------------~~ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 155 VTVGV-------------------------------DEVPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred ECCch-------------------------------HHhHHHHHHhcCCCCEEEEEeC
Confidence 95210 1222345568999999888654
No 144
>PRK04457 spermidine synthase; Provisional
Probab=99.21 E-value=4.3e-10 Score=113.47 Aligned_cols=147 Identities=13% Similarity=0.182 Sum_probs=100.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
+++.+|||+|||+|.++..+++..+ ..+|+++|+||.+++.|++++... ....+++++.+|+.+.+....++||+|+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~--~~~~rv~v~~~Da~~~l~~~~~~yD~I~ 141 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELP--ENGERFEVIEADGAEYIAVHRHSTDVIL 141 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCC--CCCCceEEEECCHHHHHHhCCCCCCEEE
Confidence 4567999999999999999998875 689999999999999999998642 1235799999999776654446899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC--HHHHHHHHHHCCCee-E
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ--SNLVRKLLFKYGFSD-I 552 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~l~~ll~~~Gf~~-i 552 (570)
+|. |.... . | .. -....+++.+.+.|+|||++++...... ...+.+.+++. |.. +
T Consensus 142 ~D~-~~~~~-~----------~--------~~-l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~-F~~~~ 199 (262)
T PRK04457 142 VDG-FDGEG-I----------I--------DA-LCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESS-FEGRV 199 (262)
T ss_pred EeC-CCCCC-C----------c--------cc-cCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHh-cCCcE
Confidence 984 22110 0 0 00 0136889999999999999988543222 23344445443 542 2
Q ss_pred EEEecCCCCceEEEE
Q psy2395 553 KSWRDLSGIERVTQG 567 (570)
Q Consensus 553 ~~~~D~~g~~R~~~~ 567 (570)
-..+-..+...++++
T Consensus 200 ~~~~~~~~~N~v~~a 214 (262)
T PRK04457 200 LELPAESHGNVAVFA 214 (262)
T ss_pred EEEecCCCccEEEEE
Confidence 233322333455555
No 145
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.21 E-value=2.1e-10 Score=120.50 Aligned_cols=152 Identities=19% Similarity=0.250 Sum_probs=96.7
Q ss_pred CeeeeecCCccccc--hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 367 GLVLNITSDVLIPR--PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 367 ~~~~~v~~~~~~pr--~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
+..|.++|+.|++. ..++.|++++++++...+..|||++||+|.+++.+|..+ .+|+|||+++.|++.|++|+..
T Consensus 164 ~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~ 240 (352)
T PF05958_consen 164 GLSFRISPGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKL 240 (352)
T ss_dssp TEEEEEETTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHH
T ss_pred ceEEEECCCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHH
Confidence 56788889988877 678899999998876545589999999999999999654 6899999999999999999998
Q ss_pred hcccCCCCEEEEEcccccccc---------------cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChH
Q psy2395 445 KLTKYNIPIKFIKSNWYNNLQ---------------NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLS 509 (570)
Q Consensus 445 ~~~~~~~~v~~~~~D~~~~l~---------------~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~ 509 (570)
|+. .+++|+.+++.+... .....+|+|+.|||=- |++
T Consensus 241 N~i---~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~-------------------------G~~ 292 (352)
T PF05958_consen 241 NGI---DNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRA-------------------------GLD 292 (352)
T ss_dssp TT-----SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT--------------------------SC
T ss_pred cCC---CcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCC-------------------------Cch
Confidence 632 359999887643211 0113689999999832 222
Q ss_pred HHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEEEE
Q psy2395 510 SIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 510 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
..+++.+.+ +.-++|+.+.+.....-...|.+ ||+..++.
T Consensus 293 --~~~~~~~~~---~~~ivYvSCnP~tlaRDl~~L~~-~y~~~~v~ 332 (352)
T PF05958_consen 293 --EKVIELIKK---LKRIVYVSCNPATLARDLKILKE-GYKLEKVQ 332 (352)
T ss_dssp --HHHHHHHHH---SSEEEEEES-HHHHHHHHHHHHC-CEEEEEEE
T ss_pred --HHHHHHHhc---CCeEEEEECCHHHHHHHHHHHhh-cCEEEEEE
Confidence 233433332 34456666655444433444544 88875543
No 146
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.21 E-value=4e-10 Score=116.51 Aligned_cols=129 Identities=17% Similarity=0.194 Sum_probs=95.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.+..+|||+|||+|.+++.+++.+| +.+++++|. |.+++.|++|+...+ ...+++++.+|+++.. . ..+|+|+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~g--l~~rv~~~~~d~~~~~-~--~~~D~v~ 220 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKG--VADRMRGIAVDIYKES-Y--PEADAVL 220 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCC--ccceEEEEecCccCCC-C--CCCCEEE
Confidence 4567999999999999999999986 589999997 899999999998753 3447999999997632 2 2479887
Q ss_pred EC-CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE-E--cC-C---------------
Q psy2395 476 AN-PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE-H--GY-N--------------- 535 (570)
Q Consensus 476 ~N-PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~-~--~~-~--------------- 535 (570)
+. -.+. .+.+....+++++++.|+|||++++. + +. .
T Consensus 221 ~~~~lh~------------------------~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~ 276 (306)
T TIGR02716 221 FCRILYS------------------------ANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAG 276 (306)
T ss_pred eEhhhhc------------------------CChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcc
Confidence 62 1111 01123467899999999999999763 2 11 1
Q ss_pred ---------CHHHHHHHHHHCCCeeEEEE
Q psy2395 536 ---------QSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 536 ---------~~~~l~~ll~~~Gf~~i~~~ 555 (570)
..+++.++|.++||+.+++.
T Consensus 277 ~~~~~~~~~~~~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 277 MPFSVLGFKEQARYKEILESLGYKDVTMV 305 (306)
T ss_pred cccccccCCCHHHHHHHHHHcCCCeeEec
Confidence 12467888889999887654
No 147
>PRK05785 hypothetical protein; Provisional
Probab=99.21 E-value=4.5e-10 Score=110.88 Aligned_cols=142 Identities=18% Similarity=0.216 Sum_probs=96.2
Q ss_pred HHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc
Q psy2395 385 LLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL 464 (570)
Q Consensus 385 ~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l 464 (570)
.++..+.... .++.+|||+|||||.++..+++.. +.+|+|+|+|+.|++.|+... .++++|+.+ +
T Consensus 40 ~~~~~l~~~~-~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~-----------~~~~~d~~~-l 104 (226)
T PRK05785 40 ELVKTILKYC-GRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD-----------DKVVGSFEA-L 104 (226)
T ss_pred HHHHHHHHhc-CCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc-----------ceEEechhh-C
Confidence 4444444332 246799999999999999999775 369999999999999987531 256788854 5
Q ss_pred ccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC--------
Q psy2395 465 QNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ-------- 536 (570)
Q Consensus 465 ~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~-------- 536 (570)
+..+++||+|+++...... ......++++.++|||.+ .+++++...
T Consensus 105 p~~d~sfD~v~~~~~l~~~-------------------------~d~~~~l~e~~RvLkp~~-~ile~~~p~~~~~~~~~ 158 (226)
T PRK05785 105 PFRDKSFDVVMSSFALHAS-------------------------DNIEKVIAEFTRVSRKQV-GFIAMGKPDNVIKRKYL 158 (226)
T ss_pred CCCCCCEEEEEecChhhcc-------------------------CCHHHHHHHHHHHhcCce-EEEEeCCCCcHHHHHHH
Confidence 6556899999996533211 123678888888888842 233432211
Q ss_pred ----------------------------------HHHHHHHHHHCCCeeEEEEecCCCCceEEEEE
Q psy2395 537 ----------------------------------SNLVRKLLFKYGFSDIKSWRDLSGIERVTQGK 568 (570)
Q Consensus 537 ----------------------------------~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~ 568 (570)
.+++.++++++| ..++...-..|.--+.+|+
T Consensus 159 ~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~ 223 (226)
T PRK05785 159 SFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKVYEERGLGLVYFVVGS 223 (226)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceEEEEccccEEEEEEEe
Confidence 256777777763 5566666666666666654
No 148
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.21 E-value=1.9e-10 Score=109.50 Aligned_cols=124 Identities=20% Similarity=0.229 Sum_probs=88.0
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.++||+|||.|..++.||+.+ ..|+|+|+|+.+++.+++.+.. .+.+++..+.|+.+... ++.||+|++
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~a~~----~~l~i~~~~~Dl~~~~~--~~~yD~I~s 100 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRLAEE----EGLDIRTRVADLNDFDF--PEEYDFIVS 100 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHH----TT-TEEEEE-BGCCBS---TTTEEEEEE
T ss_pred CCCcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHhh----cCceeEEEEecchhccc--cCCcCEEEE
Confidence 56799999999999999999775 7999999999999999888876 45679999999966433 368999998
Q ss_pred CC--CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--------------CCHHHH
Q psy2395 477 NP--PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------------NQSNLV 540 (570)
Q Consensus 477 NP--Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------------~~~~~l 540 (570)
.- .|.+. +....+++.+...++|||+++++.-. ....++
T Consensus 101 t~v~~fL~~-------------------------~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL 155 (192)
T PF03848_consen 101 TVVFMFLQR-------------------------ELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGEL 155 (192)
T ss_dssp ESSGGGS-G-------------------------GGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHH
T ss_pred EEEeccCCH-------------------------HHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHH
Confidence 31 12211 24478899999999999998874311 012455
Q ss_pred HHHHHHCCCeeEEEEe
Q psy2395 541 RKLLFKYGFSDIKSWR 556 (570)
Q Consensus 541 ~~ll~~~Gf~~i~~~~ 556 (570)
..++. +|.+++.-.
T Consensus 156 ~~~y~--dW~il~y~E 169 (192)
T PF03848_consen 156 REYYA--DWEILKYNE 169 (192)
T ss_dssp HHHTT--TSEEEEEEE
T ss_pred HHHhC--CCeEEEEEc
Confidence 55554 688765433
No 149
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.21 E-value=4.2e-10 Score=118.00 Aligned_cols=128 Identities=16% Similarity=0.090 Sum_probs=94.4
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc-cCCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ-NYKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fD~Iv 475 (570)
.+..+||||||+|.+++.+|+..| ...++|+|+++.+++.|.+++..++ -.++.++++|+...+. ..++++|.|+
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~g---L~NV~~i~~DA~~ll~~~~~~s~D~I~ 197 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLN---LKNLLIINYDARLLLELLPSNSVEKIF 197 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcC---CCcEEEEECCHHHhhhhCCCCceeEEE
Confidence 456899999999999999999886 6899999999999999999998743 2359999999854321 2247999999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-CCHHHHHHHHHHC
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-NQSNLVRKLLFKY 547 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~l~~ll~~~ 547 (570)
+|.|.-..... | ..+ ....++..+.++|+|||.+.+.+.. .......+.+.+.
T Consensus 198 lnFPdPW~Kkr--------H---RRl--------v~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~ 251 (390)
T PRK14121 198 VHFPVPWDKKP--------H---RRV--------ISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKL 251 (390)
T ss_pred EeCCCCccccc--------h---hhc--------cHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhC
Confidence 99763211110 1 001 2378999999999999999986654 3344445555555
No 150
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.20 E-value=2.5e-12 Score=109.80 Aligned_cols=98 Identities=19% Similarity=0.261 Sum_probs=61.2
Q ss_pred EEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC-CCceeEEEECCCC
Q psy2395 402 LEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY-KKLFNIIVANPPY 480 (570)
Q Consensus 402 LDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~-~~~fD~Iv~NPPy 480 (570)
||+|||+|.++..++...+ ..+++|+|+|+.|++.|++++.... .........+..+..... .++||+|+++-.+
T Consensus 1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELG---NDNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcC---CcceeEEEeecCChhhcccccccceehhhhhH
Confidence 7999999999999998875 6899999999999999988887632 223334443333322211 2589999996433
Q ss_pred CCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEE
Q psy2395 481 IPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLL 528 (570)
Q Consensus 481 ~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l 528 (570)
+.. .....+++.+.++|+|||+|
T Consensus 77 ~~l-------------------------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHL-------------------------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S---------------------------S-HHHHHHHHTTT-TSS-EE
T ss_pred hhh-------------------------hhHHHHHHHHHHHcCCCCCC
Confidence 211 24578999999999999986
No 151
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.20 E-value=1.9e-10 Score=106.56 Aligned_cols=116 Identities=23% Similarity=0.347 Sum_probs=83.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++..+ .+++|+|+++.+++. . . +.....+... ...++++||+|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~---~~~~g~D~~~~~~~~------~----~---~~~~~~~~~~-~~~~~~~fD~i~ 83 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRG---FEVTGVDISPQMIEK------R----N---VVFDNFDAQD-PPFPDGSFDLII 83 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTT---SEEEEEESSHHHHHH------T----T---SEEEEEECHT-HHCHSSSEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHhh------h----h---hhhhhhhhhh-hhccccchhhHh
Confidence 567899999999999999997654 599999999999988 1 1 2222222212 222347999999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC-------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ------------------- 536 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~------------------- 536 (570)
++--+.. +.....+++.+.++|+|||++++..+...
T Consensus 84 ~~~~l~~-------------------------~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (161)
T PF13489_consen 84 CNDVLEH-------------------------LPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGH 138 (161)
T ss_dssp EESSGGG-------------------------SSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTT
T ss_pred hHHHHhh-------------------------cccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCce
Confidence 9632211 11357899999999999999998765421
Q ss_pred -----HHHHHHHHHHCCCeeEE
Q psy2395 537 -----SNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 537 -----~~~l~~ll~~~Gf~~i~ 553 (570)
...+..+++++||++++
T Consensus 139 ~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 139 VHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp TEEBBHHHHHHHHHHTTEEEEE
T ss_pred eccCCHHHHHHHHHHCCCEEEE
Confidence 36788888889988764
No 152
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.19 E-value=1.6e-10 Score=111.85 Aligned_cols=119 Identities=23% Similarity=0.309 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccc
Q psy2395 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNW 460 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~ 460 (570)
++...++..+.... ++.+||+||||+|+-++.+|+..+++++|+.+|++++..+.|+++++..+ ...+|+++.+|+
T Consensus 31 ~~~g~lL~~l~~~~--~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag--~~~~I~~~~gda 106 (205)
T PF01596_consen 31 PETGQLLQMLVRLT--RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG--LDDRIEVIEGDA 106 (205)
T ss_dssp HHHHHHHHHHHHHH--T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT--GGGGEEEEES-H
T ss_pred HHHHHHHHHHHHhc--CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC--CCCcEEEEEecc
Confidence 44445555555433 56799999999999999999988778999999999999999999999864 345799999999
Q ss_pred ccccccC-----CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 461 YNNLQNY-----KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 461 ~~~l~~~-----~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
.+.++.. .++||+|+.+-. -..|..+++.+.++|+|||.+++.
T Consensus 107 ~~~l~~l~~~~~~~~fD~VFiDa~----------------------------K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 107 LEVLPELANDGEEGQFDFVFIDAD----------------------------KRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHHHHHHHTTTTTSEEEEEEEST----------------------------GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred HhhHHHHHhccCCCceeEEEEccc----------------------------ccchhhHHHHHhhhccCCeEEEEc
Confidence 8755421 257999999531 135677888888999999999874
No 153
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.19 E-value=4.5e-10 Score=110.38 Aligned_cols=133 Identities=17% Similarity=0.205 Sum_probs=94.1
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|.++..++.. +.+|+|+|+|+.++..|++++..++ ...++.|.++|+.+. + ++||+|++
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~~-~---~~fD~ii~ 125 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRD--VAGNVEFEVNDLLSL-C---GEFDIVVC 125 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECChhhC-C---CCcCEEEE
Confidence 5789999999999999999865 3689999999999999999987531 123699999998553 2 68999998
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC----------------------
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY---------------------- 534 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~---------------------- 534 (570)
.-.+... .......++..+.+.+++++.+.+....
T Consensus 126 ~~~l~~~-----------------------~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (219)
T TIGR02021 126 MDVLIHY-----------------------PASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSA 182 (219)
T ss_pred hhHHHhC-----------------------CHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccce
Confidence 4221110 0112356677777777766655542110
Q ss_pred --CCHHHHHHHHHHCCCeeEEEEecCCCC
Q psy2395 535 --NQSNLVRKLLFKYGFSDIKSWRDLSGI 561 (570)
Q Consensus 535 --~~~~~l~~ll~~~Gf~~i~~~~D~~g~ 561 (570)
...+.+.++++++||.++.......|.
T Consensus 183 ~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~ 211 (219)
T TIGR02021 183 YLHPMTDLERALGELGWKIVREGLVSTGF 211 (219)
T ss_pred EEecHHHHHHHHHHcCceeeeeecccccc
Confidence 134678889999999998776555443
No 154
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.19 E-value=2.6e-10 Score=121.02 Aligned_cols=101 Identities=19% Similarity=0.332 Sum_probs=81.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++.. +++|+|+|+|+.+++.|++++.. ..+++..+|+.+. .++||+|+
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~------l~v~~~~~D~~~l----~~~fD~Iv 233 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAG------LPVEIRLQDYRDL----NGQFDRIV 233 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcc------CeEEEEECchhhc----CCCCCEEE
Confidence 567899999999999999999775 47999999999999999998752 2488888887542 36899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
++..+... |...+..+++.+.++|+|||.+++.
T Consensus 234 s~~~~ehv-----------------------g~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 234 SVGMFEHV-----------------------GPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred EeCchhhC-----------------------ChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 97644311 1234578899999999999999874
No 155
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.18 E-value=1.5e-10 Score=117.60 Aligned_cols=120 Identities=20% Similarity=0.271 Sum_probs=83.8
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCC--CcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccc
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKN--KIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWY 461 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~--~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~ 461 (570)
+.+...+.........+|||+|||+|.++..++...+. ...|+|+|+|+.|++.|+++.. ++.|.++|+.
T Consensus 72 ~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~--------~~~~~~~d~~ 143 (272)
T PRK11088 72 DAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP--------QVTFCVASSH 143 (272)
T ss_pred HHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC--------CCeEEEeecc
Confidence 34444444433445578999999999999999876542 2479999999999999976532 3789999986
Q ss_pred cccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-CCHHHH
Q psy2395 462 NNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-NQSNLV 540 (570)
Q Consensus 462 ~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~l 540 (570)
+ ++..+++||+|+++- . | ..++++.+.|+|||++++..+. ....++
T Consensus 144 ~-lp~~~~sfD~I~~~~--~---------------~---------------~~~~e~~rvLkpgG~li~~~p~~~~l~el 190 (272)
T PRK11088 144 R-LPFADQSLDAIIRIY--A---------------P---------------CKAEELARVVKPGGIVITVTPGPRHLFEL 190 (272)
T ss_pred c-CCCcCCceeEEEEec--C---------------C---------------CCHHHHHhhccCCCEEEEEeCCCcchHHH
Confidence 5 444457999999841 1 0 1235677899999999887654 334444
Q ss_pred HHHH
Q psy2395 541 RKLL 544 (570)
Q Consensus 541 ~~ll 544 (570)
+..+
T Consensus 191 ~~~~ 194 (272)
T PRK11088 191 KGLI 194 (272)
T ss_pred HHHh
Confidence 4443
No 156
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.17 E-value=7e-10 Score=109.13 Aligned_cols=127 Identities=16% Similarity=0.234 Sum_probs=95.6
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCC-CEEEEEcccccccccCCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNI-PIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~-~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.+.+|||+|||+|.++..+++.. .+++|+|+++.+++.+++++..+ +. ++.+..+|+.+......++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKD----PLLKIEYRCTSVEDLAEKGAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHc----CCCceEEEeCCHHHhhcCCCCCccEEE
Confidence 46799999999999999988654 47999999999999999998753 33 588999998654332236899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC--------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN-------------------- 535 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~-------------------- 535 (570)
++..+... .....++..+.+.|+|||.+++.....
T Consensus 118 ~~~~l~~~-------------------------~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (224)
T TIGR01983 118 CMEVLEHV-------------------------PDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVP 172 (224)
T ss_pred ehhHHHhC-------------------------CCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCC
Confidence 96432211 123678889999999999988754211
Q ss_pred ----------CHHHHHHHHHHCCCeeEEEE
Q psy2395 536 ----------QSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 536 ----------~~~~l~~ll~~~Gf~~i~~~ 555 (570)
....+.+++.+.||+.+++.
T Consensus 173 ~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 173 KGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred CCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 23467889999999987654
No 157
>KOG3420|consensus
Probab=99.15 E-value=8.2e-11 Score=104.11 Aligned_cols=97 Identities=23% Similarity=0.359 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcc
Q psy2395 381 PETELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D 459 (570)
..+..|+..+-.-.. -.+++++|+|||+|.+++..+... ...|+|+||+|++++.+.+|+.. ...++.++++|
T Consensus 31 ~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~--~e~vlGfDIdpeALEIf~rNaeE----fEvqidlLqcd 104 (185)
T KOG3420|consen 31 HIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPK--NESVLGFDIDPEALEIFTRNAEE----FEVQIDLLQCD 104 (185)
T ss_pred HHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCC--CceEEeeecCHHHHHHHhhchHH----hhhhhheeeee
Confidence 344555555544322 367899999999999997776543 56899999999999999999987 57778999999
Q ss_pred cccccccCCCceeEEEECCCCCCCC
Q psy2395 460 WYNNLQNYKKLFNIIVANPPYIPKG 484 (570)
Q Consensus 460 ~~~~l~~~~~~fD~Iv~NPPy~~~~ 484 (570)
+.+.... .+.||.++.||||....
T Consensus 105 ildle~~-~g~fDtaviNppFGTk~ 128 (185)
T KOG3420|consen 105 ILDLELK-GGIFDTAVINPPFGTKK 128 (185)
T ss_pred ccchhcc-CCeEeeEEecCCCCccc
Confidence 9775443 47899999999998653
No 158
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.15 E-value=5e-10 Score=108.55 Aligned_cols=118 Identities=19% Similarity=0.291 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEE-cc
Q psy2395 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIK-SN 459 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~-~D 459 (570)
|++-.++..++... ++.+||++|++.|+-++.+|...+.+.+++.+|+++++.+.|++|+++.+ ...++.++. +|
T Consensus 45 ~e~g~~L~~L~~~~--~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag--~~~~i~~~~~gd 120 (219)
T COG4122 45 PETGALLRLLARLS--GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG--VDDRIELLLGGD 120 (219)
T ss_pred hhHHHHHHHHHHhc--CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC--CcceEEEEecCc
Confidence 67777777776643 67899999999999999999988767899999999999999999999864 344588888 69
Q ss_pred ccccccc-CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 460 WYNNLQN-YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 460 ~~~~l~~-~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
+.+.+.. ..++||+||.+- ....|..+++.+.++|+|||.+++
T Consensus 121 al~~l~~~~~~~fDliFIDa----------------------------dK~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 121 ALDVLSRLLDGSFDLVFIDA----------------------------DKADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred HHHHHHhccCCCccEEEEeC----------------------------ChhhCHHHHHHHHHHhCCCcEEEE
Confidence 8877663 458999999952 113567889999999999999987
No 159
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.14 E-value=9.1e-10 Score=113.98 Aligned_cols=133 Identities=22% Similarity=0.255 Sum_probs=96.6
Q ss_pred cchhHHHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCC-------------------------------Cc---
Q psy2395 379 PRPETELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKN-------------------------------KI--- 423 (570)
Q Consensus 379 pr~~t~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~-------------------------------~~--- 423 (570)
|.|..+.|...++.... .++..++|.-||||.+++..|...++ .+
T Consensus 172 ~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~ 251 (381)
T COG0116 172 PAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRG 251 (381)
T ss_pred CCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhc
Confidence 34556777666665422 34568999999999999999977631 01
Q ss_pred ----EEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccc
Q psy2395 424 ----EIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPIN 499 (570)
Q Consensus 424 ----~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~ 499 (570)
.++|+|+|+.+++.|+.|+...| ....|+|.++|+...-+.. +.+|+|||||||...-
T Consensus 252 ~~~~~~~G~Did~r~i~~Ak~NA~~AG--v~d~I~f~~~d~~~l~~~~-~~~gvvI~NPPYGeRl--------------- 313 (381)
T COG0116 252 KELPIIYGSDIDPRHIEGAKANARAAG--VGDLIEFKQADATDLKEPL-EEYGVVISNPPYGERL--------------- 313 (381)
T ss_pred CccceEEEecCCHHHHHHHHHHHHhcC--CCceEEEEEcchhhCCCCC-CcCCEEEeCCCcchhc---------------
Confidence 37899999999999999999754 4456999999996533322 6899999999998431
Q ss_pred cccccCCCh-HHHHHHHHHHhhccccCeEEEEEE
Q psy2395 500 ALTDYSNGL-SSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 500 al~~~~~gl-~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
+..... .+|..|.+.+.+.++.-+..++..
T Consensus 314 ---g~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 314 ---GSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred ---CChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 111122 378888888888887777776654
No 160
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.13 E-value=1.4e-09 Score=112.06 Aligned_cols=135 Identities=16% Similarity=0.080 Sum_probs=89.9
Q ss_pred CCccccchhHHHHHHHHHhh--cCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCC
Q psy2395 374 SDVLIPRPETELLVDLIVKK--TFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNI 451 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~--~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~ 451 (570)
|.++-.|.+...+...+... ..+++.+|||+|||||..+..++..++...+|+|+|+|++|++.|++++.... ...
T Consensus 38 peYy~tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~--p~~ 115 (301)
T TIGR03438 38 PEYYPTRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY--PQL 115 (301)
T ss_pred CccccHHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC--CCc
Confidence 44443445555555444322 12456799999999999999999876434789999999999999999886521 245
Q ss_pred CEEEEEcccccccccCCC----ceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeE
Q psy2395 452 PIKFIKSNWYNNLQNYKK----LFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGL 527 (570)
Q Consensus 452 ~v~~~~~D~~~~l~~~~~----~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~ 527 (570)
++.++++|+.+....... ...++++..++... ..+....+++.+.+.|+|||.
T Consensus 116 ~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~-----------------------~~~e~~~~L~~i~~~L~pgG~ 172 (301)
T TIGR03438 116 EVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNF-----------------------TPEEAVAFLRRIRQLLGPGGG 172 (301)
T ss_pred eEEEEEEcccchhhhhcccccCCeEEEEecccccCC-----------------------CHHHHHHHHHHHHHhcCCCCE
Confidence 688899999765432211 22233332221110 113456899999999999999
Q ss_pred EEEEEc
Q psy2395 528 LLIEHG 533 (570)
Q Consensus 528 l~~~~~ 533 (570)
+++.+.
T Consensus 173 ~lig~d 178 (301)
T TIGR03438 173 LLIGVD 178 (301)
T ss_pred EEEecc
Confidence 998653
No 161
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.12 E-value=4.5e-10 Score=108.04 Aligned_cols=126 Identities=22% Similarity=0.278 Sum_probs=84.0
Q ss_pred Ceeeeec--CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 367 GLVLNIT--SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 367 ~~~~~v~--~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
|..|.++ .-+|.|+-.+|.. .+.. ...++..|+|++||.|.+++.+|+..+ ...|+|+|++|.+++..++|++.
T Consensus 72 G~~f~~D~~kvyfs~rl~~Er~--Ri~~-~v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~l 147 (200)
T PF02475_consen 72 GIRFKVDLSKVYFSPRLSTERR--RIAN-LVKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRL 147 (200)
T ss_dssp TEEEEEETTTS---GGGHHHHH--HHHT-C--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHH
T ss_pred CEEEEEccceEEEccccHHHHH--HHHh-cCCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHH
Confidence 4555444 5567787555542 1222 235688999999999999999998654 57999999999999999999998
Q ss_pred hcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcccc
Q psy2395 445 KLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVK 524 (570)
Q Consensus 445 ~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkp 524 (570)
|. ...++.++++|+.+..+ ...||.|++|.|... ..++..+..++++
T Consensus 148 Nk--v~~~i~~~~~D~~~~~~--~~~~drvim~lp~~~-----------------------------~~fl~~~~~~~~~ 194 (200)
T PF02475_consen 148 NK--VENRIEVINGDAREFLP--EGKFDRVIMNLPESS-----------------------------LEFLDAALSLLKE 194 (200)
T ss_dssp TT---TTTEEEEES-GGG-----TT-EEEEEE--TSSG-----------------------------GGGHHHHHHHEEE
T ss_pred cC--CCCeEEEEcCCHHHhcC--ccccCEEEECChHHH-----------------------------HHHHHHHHHHhcC
Confidence 74 34569999999977665 478999999987531 2456667778999
Q ss_pred CeEEE
Q psy2395 525 NGLLL 529 (570)
Q Consensus 525 gG~l~ 529 (570)
||++-
T Consensus 195 ~g~ih 199 (200)
T PF02475_consen 195 GGIIH 199 (200)
T ss_dssp EEEEE
T ss_pred CcEEE
Confidence 99874
No 162
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.12 E-value=4.6e-10 Score=110.05 Aligned_cols=141 Identities=11% Similarity=-0.005 Sum_probs=89.2
Q ss_pred HHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhc---------ccCCCCEEE
Q psy2395 385 LLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKL---------TKYNIPIKF 455 (570)
Q Consensus 385 ~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~---------~~~~~~v~~ 455 (570)
.+++++.....+++.+|||+|||.|..++.||.. +.+|+|||+|+.+++.+........ .....++++
T Consensus 25 ~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~ 101 (218)
T PRK13255 25 LLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITI 101 (218)
T ss_pred HHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEE
Confidence 3444433222345679999999999999999965 4799999999999998743111000 001346899
Q ss_pred EEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE-E--
Q psy2395 456 IKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE-H-- 532 (570)
Q Consensus 456 ~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~-~-- 532 (570)
.++|+++..+...+.||+|+----++.. ..+.-..+++.+.++|+|||.+++. .
T Consensus 102 ~~~D~~~l~~~~~~~fd~v~D~~~~~~l-----------------------~~~~R~~~~~~l~~lL~pgG~~~l~~~~~ 158 (218)
T PRK13255 102 YCGDFFALTAADLADVDAVYDRAALIAL-----------------------PEEMRERYVQQLAALLPAGCRGLLVTLDY 158 (218)
T ss_pred EECcccCCCcccCCCeeEEEehHhHhhC-----------------------CHHHHHHHHHHHHHHcCCCCeEEEEEEEe
Confidence 9999987543323579999852211100 0123467889999999999964432 1
Q ss_pred cC---------CCHHHHHHHHHHCCCeeE
Q psy2395 533 GY---------NQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 533 ~~---------~~~~~l~~ll~~~Gf~~i 552 (570)
+. -..+++.+++.. +|.+.
T Consensus 159 ~~~~~~gPp~~~~~~el~~~~~~-~~~i~ 186 (218)
T PRK13255 159 PQEELAGPPFSVSDEEVEALYAG-CFEIE 186 (218)
T ss_pred CCccCCCCCCCCCHHHHHHHhcC-CceEE
Confidence 11 125667777753 25544
No 163
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.12 E-value=9.9e-09 Score=102.98 Aligned_cols=187 Identities=17% Similarity=0.206 Sum_probs=112.5
Q ss_pred eeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHHHHhhc-CCCCCEEEEEC
Q psy2395 327 LIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKT-FEKKIKLLEMG 405 (570)
Q Consensus 327 ~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~-~~~~~~VLDlG 405 (570)
+.+.....++..+.+.++..+... .|... |-..++|.. ++..-- +..--+.+...+ .-.+.+|||||
T Consensus 56 v~i~~~~~l~~~~~~~l~~~l~~l---~PWRK--GPf~l~gi~--IDtEWr-----Sd~KW~rl~p~l~~L~gk~VLDIG 123 (315)
T PF08003_consen 56 VTIGSASDLSAEQRQQLEQLLKAL---MPWRK--GPFSLFGIH--IDTEWR-----SDWKWDRLLPHLPDLKGKRVLDIG 123 (315)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHhh---CCccc--CCcccCCEe--eccccc-----ccchHHHHHhhhCCcCCCEEEEec
Confidence 455666778888888877776543 22211 111122222 221110 111112232322 22678999999
Q ss_pred CcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCC
Q psy2395 406 TGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGD 485 (570)
Q Consensus 406 cGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~ 485 (570)
||+|+.+..++..++ ..|+|+|-++..+...+--.... +....+.++ ....+.++. .+.||+|+|---+++..
T Consensus 124 C~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~l--g~~~~~~~l-plgvE~Lp~-~~~FDtVF~MGVLYHrr- 196 (315)
T PF08003_consen 124 CNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFL--GQDPPVFEL-PLGVEDLPN-LGAFDTVFSMGVLYHRR- 196 (315)
T ss_pred CCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHh--CCCccEEEc-Ccchhhccc-cCCcCEEEEeeehhccC-
Confidence 999999999998874 68999999887766544322221 122223333 223344554 47899999954322111
Q ss_pred cccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE----cCC--------------------CHHHHH
Q psy2395 486 IHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH----GYN--------------------QSNLVR 541 (570)
Q Consensus 486 ~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~----~~~--------------------~~~~l~ 541 (570)
..-..+..+...|++||.+++++ |.. ....+.
T Consensus 197 ------------------------~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~ 252 (315)
T PF08003_consen 197 ------------------------SPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALK 252 (315)
T ss_pred ------------------------CHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHH
Confidence 12466778888999999999854 111 257899
Q ss_pred HHHHHCCCeeEEEEe
Q psy2395 542 KLLFKYGFSDIKSWR 556 (570)
Q Consensus 542 ~ll~~~Gf~~i~~~~ 556 (570)
.+|+++||..+++..
T Consensus 253 ~wl~r~gF~~v~~v~ 267 (315)
T PF08003_consen 253 NWLERAGFKDVRCVD 267 (315)
T ss_pred HHHHHcCCceEEEec
Confidence 999999999998764
No 164
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.11 E-value=6.8e-10 Score=93.35 Aligned_cols=103 Identities=24% Similarity=0.462 Sum_probs=80.8
Q ss_pred EEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCC
Q psy2395 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPP 479 (570)
Q Consensus 400 ~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPP 479 (570)
+|+|+|||+|.++..++. . ...+++++|+++.++..++++.... ...++.++.+|+.+.......+||+|++|+|
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAAL---LADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhcc---cccceEEEEcChhhhccccCCceEEEEEccc
Confidence 489999999999999987 2 3579999999999999998644331 2346899999997755323468999999998
Q ss_pred CCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 480 YIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 480 y~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
+... ......+++.+.+.|+|||.+++.
T Consensus 76 ~~~~------------------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHL------------------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeeh------------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 7531 124578889999999999999875
No 165
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.11 E-value=2.2e-09 Score=106.00 Aligned_cols=133 Identities=19% Similarity=0.268 Sum_probs=91.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++...+ ...++.+..+|+ .. ..++||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~-~~---~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAG--LAGNITFEVGDL-ES---LLGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC--CccCcEEEEcCc-hh---ccCCcCEEE
Confidence 356799999999999999998764 579999999999999999987532 223689999995 22 236899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC---------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------------------- 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------------------- 534 (570)
++-.++..+ ......++..+.+.+++++.+.+ .+.
T Consensus 133 ~~~~l~~~~-----------------------~~~~~~~l~~l~~~~~~~~~i~~-~~~~~~~~~~~~l~~~~~~~~~~~ 188 (230)
T PRK07580 133 CLDVLIHYP-----------------------QEDAARMLAHLASLTRGSLIFTF-APYTPLLALLHWIGGLFPGPSRTT 188 (230)
T ss_pred EcchhhcCC-----------------------HHHHHHHHHHHHhhcCCeEEEEE-CCccHHHHHHHHhccccCCccCCC
Confidence 964432111 01235566666665554443332 111
Q ss_pred ----CCHHHHHHHHHHCCCeeEEEEecCCCC
Q psy2395 535 ----NQSNLVRKLLFKYGFSDIKSWRDLSGI 561 (570)
Q Consensus 535 ----~~~~~l~~ll~~~Gf~~i~~~~D~~g~ 561 (570)
.....+.+++..+||+.+.+.....|.
T Consensus 189 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~ 219 (230)
T PRK07580 189 RIYPHREKGIRRALAAAGFKVVRTERISSGF 219 (230)
T ss_pred CccccCHHHHHHHHHHCCCceEeeeeccchh
Confidence 123568889999999988776655443
No 166
>PRK01581 speE spermidine synthase; Validated
Probab=99.11 E-value=3.5e-09 Score=109.57 Aligned_cols=178 Identities=12% Similarity=0.152 Sum_probs=113.2
Q ss_pred eeeecCCccccchh----HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHH--
Q psy2395 369 VLNITSDVLIPRPE----TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNA-- 442 (570)
Q Consensus 369 ~~~v~~~~~~pr~~----t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~-- 442 (570)
.+.++....+...+ .+.++.-.+.. ...+.+||++|||+|..+..+++.. +..+|++||+|+++++.|+...
T Consensus 119 ~L~LDG~~Q~se~DE~iYHE~Lvhp~m~~-h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L 196 (374)
T PRK01581 119 RLYLDKQLQFSSVDEQIYHEALVHPIMSK-VIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPEL 196 (374)
T ss_pred EEEECCeeccccccHHHHHHHHHHHHHHh-CCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhcccc
Confidence 46666555444433 33444433222 2456799999999999888887654 3579999999999999999631
Q ss_pred H-hhccc-CCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhh
Q psy2395 443 K-KKLTK-YNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASK 520 (570)
Q Consensus 443 ~-~~~~~-~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~ 520 (570)
. .+... .+.+++++.+|+.+.+....++||+|++|+|-.... .. . .-.-..+++.+.+
T Consensus 197 ~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~-----~~--------------~-~LyT~EFy~~~~~ 256 (374)
T PRK01581 197 VSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATE-----LL--------------S-TLYTSELFARIAT 256 (374)
T ss_pred chhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCCcccc-----ch--------------h-hhhHHHHHHHHHH
Confidence 1 01001 245799999999887765557899999997531100 00 0 0112678899999
Q ss_pred ccccCeEEEEEEcCC--CH---HHHHHHHHHCCCeeEEEE---ecCCCCceEEEEE
Q psy2395 521 YLVKNGLLLIEHGYN--QS---NLVRKLLFKYGFSDIKSW---RDLSGIERVTQGK 568 (570)
Q Consensus 521 ~LkpgG~l~~~~~~~--~~---~~l~~ll~~~Gf~~i~~~---~D~~g~~R~~~~~ 568 (570)
.|+|||++++..+.. .. ..+.+.+++.|+...... +-+.+..-+++|.
T Consensus 257 ~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as 312 (374)
T PRK01581 257 FLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAA 312 (374)
T ss_pred hcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEe
Confidence 999999988754321 11 235667788887654322 2334434555554
No 167
>PRK03612 spermidine synthase; Provisional
Probab=99.10 E-value=1.1e-09 Score=121.07 Aligned_cols=133 Identities=15% Similarity=0.233 Sum_probs=95.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh---hc-ccCCCCEEEEEcccccccccCCCce
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK---KL-TKYNIPIKFIKSNWYNNLQNYKKLF 471 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~---~~-~~~~~~v~~~~~D~~~~l~~~~~~f 471 (570)
+++.+|||+|||+|..+..+++. +...+|+++|+|+++++.|++|... +. .-.+.+++++.+|+.+.+....++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 45679999999999999998865 3236999999999999999995321 10 0123479999999987665445789
Q ss_pred eEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--CC---HHHHHHHHHH
Q psy2395 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--NQ---SNLVRKLLFK 546 (570)
Q Consensus 472 D~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--~~---~~~l~~ll~~ 546 (570)
|+|++|+|....+.. ..-+..++++.+.+.|+|||.+++..+. .. ...+.+.+++
T Consensus 375 DvIi~D~~~~~~~~~--------------------~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~ 434 (521)
T PRK03612 375 DVIIVDLPDPSNPAL--------------------GKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEA 434 (521)
T ss_pred CEEEEeCCCCCCcch--------------------hccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHH
Confidence 999999874321100 0012257888899999999999885532 22 3456777888
Q ss_pred CCC
Q psy2395 547 YGF 549 (570)
Q Consensus 547 ~Gf 549 (570)
.||
T Consensus 435 ~gf 437 (521)
T PRK03612 435 AGL 437 (521)
T ss_pred cCC
Confidence 899
No 168
>KOG1270|consensus
Probab=99.10 E-value=1.1e-10 Score=113.72 Aligned_cols=101 Identities=20% Similarity=0.314 Sum_probs=74.6
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCC----CEEEEEcccccccccCCCceeE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNI----PIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~----~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
+.+|||+|||+|.++..||+.+ +.|+|||+++.+++.|++..... -.... ++++.+.|+.. .. ++||.
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~d-P~~~~~~~y~l~~~~~~~E~-~~---~~fDa 161 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMD-PVLEGAIAYRLEYEDTDVEG-LT---GKFDA 161 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcC-chhccccceeeehhhcchhh-cc---cccce
Confidence 4689999999999999999775 79999999999999999995432 11112 35566666633 22 56999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
|+|---+. .......++..+.+.|+|||.+++.
T Consensus 162 Vvcsevle-------------------------HV~dp~~~l~~l~~~lkP~G~lfit 194 (282)
T KOG1270|consen 162 VVCSEVLE-------------------------HVKDPQEFLNCLSALLKPNGRLFIT 194 (282)
T ss_pred eeeHHHHH-------------------------HHhCHHHHHHHHHHHhCCCCceEee
Confidence 99932111 1123478888999999999999974
No 169
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.09 E-value=4e-09 Score=107.03 Aligned_cols=150 Identities=16% Similarity=0.187 Sum_probs=100.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcc-cCCCCEEEEEcccccccccCCCceeEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT-KYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~-~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
+.+.+||++|||+|.++..+++..+ ..+++++|+|+.+++.|++++..... ....+++++.+|..+.+....++||+|
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 3456999999999999988887643 46899999999999999998764311 123468899999877665445789999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--CCHHHHHH---HHHHCCC
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--NQSNLVRK---LLFKYGF 549 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~l~~---ll~~~Gf 549 (570)
++|++...... ..+ ....+++.+.+.|+|||.+++..+. .....+.. .+.+. |
T Consensus 150 i~D~~~~~~~~--------------------~~l-~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~-F 207 (270)
T TIGR00417 150 IVDSTDPVGPA--------------------ETL-FTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEA-F 207 (270)
T ss_pred EEeCCCCCCcc--------------------cch-hHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHH-C
Confidence 99876421110 000 2367888899999999999886432 23333333 34343 6
Q ss_pred eeEEEEec----C-CCCceEEEEE
Q psy2395 550 SDIKSWRD----L-SGIERVTQGK 568 (570)
Q Consensus 550 ~~i~~~~D----~-~g~~R~~~~~ 568 (570)
..+..+.- + .|..-+++|.
T Consensus 208 ~~v~~~~~~vp~~~~g~~~~~~as 231 (270)
T TIGR00417 208 PITEYYTANIPTYPSGLWTFTIGS 231 (270)
T ss_pred CCeEEEEEEcCccccchhEEEEEE
Confidence 66654432 1 2444555554
No 170
>PLN02366 spermidine synthase
Probab=99.08 E-value=3e-09 Score=109.41 Aligned_cols=144 Identities=16% Similarity=0.195 Sum_probs=96.3
Q ss_pred CeeeeecCCccccchhHHHHHHHHHhh---cCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 367 GLVLNITSDVLIPRPETELLVDLIVKK---TFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 367 ~~~~~v~~~~~~pr~~t~~l~~~~~~~---~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~ 443 (570)
|..+.++.......++.....+.+... ..+++.+||++|||.|.++..+++. +...+|+.||+++.+++.|++.+.
T Consensus 58 g~~L~lDg~~q~~~~de~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~ 136 (308)
T PLN02366 58 GKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFP 136 (308)
T ss_pred ceEEEECCEeeecCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhh
Confidence 556666555444333322222222211 1246789999999999999999876 335689999999999999999876
Q ss_pred hhccc-CCCCEEEEEcccccccccC-CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhc
Q psy2395 444 KKLTK-YNIPIKFIKSNWYNNLQNY-KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKY 521 (570)
Q Consensus 444 ~~~~~-~~~~v~~~~~D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~ 521 (570)
..... .+.+++++.+|+...+... .++||+|+++.+-... | ...-+...+++.+.+.
T Consensus 137 ~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~-------------~--------~~~L~t~ef~~~~~~~ 195 (308)
T PLN02366 137 DLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVG-------------P--------AQELFEKPFFESVARA 195 (308)
T ss_pred hhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCCCC-------------c--------hhhhhHHHHHHHHHHh
Confidence 42111 2447999999987765432 4689999997531100 0 0001236788999999
Q ss_pred cccCeEEEEEE
Q psy2395 522 LVKNGLLLIEH 532 (570)
Q Consensus 522 LkpgG~l~~~~ 532 (570)
|+|||.++...
T Consensus 196 L~pgGvlv~q~ 206 (308)
T PLN02366 196 LRPGGVVCTQA 206 (308)
T ss_pred cCCCcEEEECc
Confidence 99999997643
No 171
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.08 E-value=6e-10 Score=112.56 Aligned_cols=111 Identities=20% Similarity=0.345 Sum_probs=78.7
Q ss_pred CCCEEEEECCcccH----HHHHHHHhcCC----CcEEEEEeCCHHHHHHHHHHHHhh----cc-----------------
Q psy2395 397 KKIKLLEMGTGSGA----IAIAIAIYSKN----KIEIIATDISKFALKIAKKNAKKK----LT----------------- 447 (570)
Q Consensus 397 ~~~~VLDlGcGtG~----i~l~la~~~~~----~~~V~gvDis~~al~~A~~n~~~~----~~----------------- 447 (570)
++.+|||+|||||. +++.++..++. +.+|+|+|+|+.|++.|++.+... ..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 56666655431 478999999999999999864210 00
Q ss_pred ---cCCCCEEEEEcccccccccCCCceeEEEECCC--CCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcc
Q psy2395 448 ---KYNIPIKFIKSNWYNNLQNYKKLFNIIVANPP--YIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYL 522 (570)
Q Consensus 448 ---~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPP--y~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~L 522 (570)
....+|.|.++|+.+... +.++||+|+|.-- |++. .....+++.+.+.|
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~crnvl~yf~~-------------------------~~~~~~l~~l~~~L 232 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESP-PLGDFDLIFCRNVLIYFDE-------------------------PTQRKLLNRFAEAL 232 (264)
T ss_pred EChHHhCcCEEeeccCCCCCC-ccCCCCEEEechhHHhCCH-------------------------HHHHHHHHHHHHHh
Confidence 011258999999977433 3478999999422 2210 23468999999999
Q ss_pred ccCeEEEEEEc
Q psy2395 523 VKNGLLLIEHG 533 (570)
Q Consensus 523 kpgG~l~~~~~ 533 (570)
+|||++++...
T Consensus 233 ~pGG~L~lg~~ 243 (264)
T smart00138 233 KPGGYLFLGHS 243 (264)
T ss_pred CCCeEEEEECc
Confidence 99999998543
No 172
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.07 E-value=2.7e-09 Score=121.84 Aligned_cols=138 Identities=18% Similarity=0.167 Sum_probs=93.6
Q ss_pred cchhHHHHHHHHHhhcC--CCCCEEEEECCcccHHHHHHHHhcC------------------------------------
Q psy2395 379 PRPETELLVDLIVKKTF--EKKIKLLEMGTGSGAIAIAIAIYSK------------------------------------ 420 (570)
Q Consensus 379 pr~~t~~l~~~~~~~~~--~~~~~VLDlGcGtG~i~l~la~~~~------------------------------------ 420 (570)
|.|..+.+...++.... .++..++|++||||.+.+..|....
T Consensus 170 ~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~ 249 (702)
T PRK11783 170 EAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERAR 249 (702)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHh
Confidence 44555666666655421 3567999999999999998876311
Q ss_pred -----CCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC-CCceeEEEECCCCCCCCCcccCCCCcc
Q psy2395 421 -----NKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY-KKLFNIIVANPPYIPKGDIHLNKGDLR 494 (570)
Q Consensus 421 -----~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~~~~~~~~ 494 (570)
...+++|+|+++.+++.|+.|+..++ ....+.|.++|+.+..... .++||+|++||||...-..
T Consensus 250 ~~~~~~~~~i~G~Did~~av~~A~~N~~~~g--~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~-------- 319 (702)
T PRK11783 250 AGLAELPSKFYGSDIDPRVIQAARKNARRAG--VAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGE-------- 319 (702)
T ss_pred hcccccCceEEEEECCHHHHHHHHHHHHHcC--CCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCc--------
Confidence 01369999999999999999999864 3346899999997643221 2579999999999853210
Q ss_pred ccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC
Q psy2395 495 FEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ 536 (570)
Q Consensus 495 ~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 536 (570)
..+-..+|..+-+.. +...+|+.+++.++...
T Consensus 320 ---------~~~l~~lY~~lg~~l-k~~~~g~~~~llt~~~~ 351 (702)
T PRK11783 320 ---------EPALIALYSQLGRRL-KQQFGGWNAALFSSSPE 351 (702)
T ss_pred ---------hHHHHHHHHHHHHHH-HHhCCCCeEEEEeCCHH
Confidence 001123455544433 33448988888777643
No 173
>PLN03075 nicotianamine synthase; Provisional
Probab=99.06 E-value=2.1e-09 Score=108.91 Aligned_cols=147 Identities=12% Similarity=0.165 Sum_probs=96.3
Q ss_pred CCCEEEEECCcccHH-HHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAI-AIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i-~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
++.+|+|+|||.|.+ ++.++....++++++|+|+|+++++.|++++... .+...+++|..+|+.+.... .+.||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~-~gL~~rV~F~~~Da~~~~~~-l~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD-PDLSKRMFFHTADVMDVTES-LKEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc-cCccCCcEEEECchhhcccc-cCCcCEEE
Confidence 678999999997744 4444433334689999999999999999999541 12345799999999774322 36899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHH---HHHHHHCCCeeE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLV---RKLLFKYGFSDI 552 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l---~~ll~~~Gf~~i 552 (570)
++ -.+..+ .....++++.+.+.|+|||.+++..+.+...-+ ...-.-.||...
T Consensus 201 ~~-ALi~~d-----------------------k~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~ 256 (296)
T PLN03075 201 LA-ALVGMD-----------------------KEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVL 256 (296)
T ss_pred Ee-cccccc-----------------------cccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEE
Confidence 95 211100 023578999999999999999987643321111 000112389886
Q ss_pred EEEecCCC-CceEEEEEe
Q psy2395 553 KSWRDLSG-IERVTQGKI 569 (570)
Q Consensus 553 ~~~~D~~g-~~R~~~~~~ 569 (570)
.++.-... ..-++++|+
T Consensus 257 ~~~~P~~~v~Nsvi~~r~ 274 (296)
T PLN03075 257 SVFHPTDEVINSVIIARK 274 (296)
T ss_pred EEECCCCCceeeEEEEEe
Confidence 65544333 334555553
No 174
>KOG1541|consensus
Probab=99.05 E-value=1.6e-09 Score=102.72 Aligned_cols=130 Identities=16% Similarity=0.149 Sum_probs=90.7
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
.+.-|||||||||..+..+... +...+|+||||.|++.|.+.-- .-.++.+|+-+.+++..+.||.+|+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e~--------egdlil~DMG~GlpfrpGtFDg~IS 118 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVEREL--------EGDLILCDMGEGLPFRPGTFDGVIS 118 (270)
T ss_pred CCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhhh--------hcCeeeeecCCCCCCCCCccceEEE
Confidence 4668999999999998888743 4689999999999999987221 1358889998889888899999988
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCH---HHHHHHHHHCCCee
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQS---NLVRKLLFKYGFSD 551 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~l~~ll~~~Gf~~ 551 (570)
=. .-.+........+.| ..-+..|+...+.+|++|+..++.+-+.+. +.+..-...+||.-
T Consensus 119 IS----AvQWLcnA~~s~~~P----------~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~G 182 (270)
T KOG1541|consen 119 IS----AVQWLCNADKSLHVP----------KKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGG 182 (270)
T ss_pred ee----eeeeecccCccccCh----------HHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCC
Confidence 21 100100111111222 234567888899999999999997755444 44445555678763
No 175
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.05 E-value=1.3e-09 Score=119.56 Aligned_cols=125 Identities=16% Similarity=0.209 Sum_probs=91.6
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc-cccCCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN-LQNYKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~-l~~~~~~fD~Iv 475 (570)
++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.++.... ...++.++++|+... ++.+.++||+|+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~fD~I~ 108 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESING-----HYKNVKFMCADVTSPDLNISDGSVDLIF 108 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhc-----cCCceEEEEecccccccCCCCCCEEEEe
Confidence 45699999999999999999764 589999999999988765322 234689999998642 333347899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-cC---------------CCHHH
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-GY---------------NQSNL 539 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~~---------------~~~~~ 539 (570)
++.++.... -+....+++.+.+.|+|||++++.- .. .....
T Consensus 109 ~~~~l~~l~-----------------------~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 165 (475)
T PLN02336 109 SNWLLMYLS-----------------------DKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRF 165 (475)
T ss_pred hhhhHHhCC-----------------------HHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHH
Confidence 987654221 0134788999999999999998731 10 12456
Q ss_pred HHHHHHHCCCeeE
Q psy2395 540 VRKLLFKYGFSDI 552 (570)
Q Consensus 540 l~~ll~~~Gf~~i 552 (570)
..+++.++||...
T Consensus 166 ~~~~f~~~~~~~~ 178 (475)
T PLN02336 166 YTKVFKECHTRDE 178 (475)
T ss_pred HHHHHHHheeccC
Confidence 6778888887643
No 176
>PRK06202 hypothetical protein; Provisional
Probab=99.05 E-value=1.4e-09 Score=107.75 Aligned_cols=79 Identities=23% Similarity=0.394 Sum_probs=57.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHhc---CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCcee
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYS---KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFN 472 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~---~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD 472 (570)
.++.+|||+|||+|.++..++... ..+.+|+|+|+|+.|++.|+++... . ++.+.+++... ++..+++||
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~----~--~~~~~~~~~~~-l~~~~~~fD 131 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR----P--GVTFRQAVSDE-LVAEGERFD 131 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc----C--CCeEEEEeccc-ccccCCCcc
Confidence 356799999999999999887642 1246999999999999999887643 2 24455554422 222347899
Q ss_pred EEEECCCCC
Q psy2395 473 IIVANPPYI 481 (570)
Q Consensus 473 ~Iv~NPPy~ 481 (570)
+|++|..++
T Consensus 132 ~V~~~~~lh 140 (232)
T PRK06202 132 VVTSNHFLH 140 (232)
T ss_pred EEEECCeee
Confidence 999986554
No 177
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.02 E-value=3.4e-09 Score=112.24 Aligned_cols=101 Identities=19% Similarity=0.219 Sum_probs=80.0
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEEC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVAN 477 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~N 477 (570)
+.+|||++||+|.+++.++...+ ..+|+++|+|+.+++.+++|++.|+. .++.++++|+...+.. ..+||+|++|
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~---~~~~v~~~Da~~~l~~-~~~fD~V~lD 132 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGL---ENEKVFNKDANALLHE-ERKFDVVDID 132 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC---CceEEEhhhHHHHHhh-cCCCCEEEEC
Confidence 46899999999999999998764 35899999999999999999998632 2477999998665432 3579999999
Q ss_pred CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 478 PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 478 PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
|| .. ...++..+...+++||++++..
T Consensus 133 P~-Gs----------------------------~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 133 PF-GS----------------------------PAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred CC-CC----------------------------cHHHHHHHHHHhcCCCEEEEEe
Confidence 86 21 1356666667789999999853
No 178
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.02 E-value=4.1e-09 Score=104.82 Aligned_cols=119 Identities=15% Similarity=0.181 Sum_probs=93.9
Q ss_pred chhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcc
Q psy2395 380 RPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459 (570)
Q Consensus 380 r~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D 459 (570)
.|++..++..++... ++.+||++||++|+-++.+|...+++++|+++|++++..+.|++|+...+ ...+|+++.||
T Consensus 64 ~~~~g~lL~~l~~~~--~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag--~~~~I~~~~G~ 139 (247)
T PLN02589 64 SADEGQFLNMLLKLI--NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG--VAHKIDFREGP 139 (247)
T ss_pred CHHHHHHHHHHHHHh--CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--CCCceEEEecc
Confidence 355555555555532 56799999999999999999877667899999999999999999999754 34579999999
Q ss_pred cccccccC------CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 460 WYNNLQNY------KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 460 ~~~~l~~~------~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
+.+.++.. .++||+|+.+-- -..|...++.+.++|+|||.+++
T Consensus 140 a~e~L~~l~~~~~~~~~fD~iFiDad----------------------------K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 140 ALPVLDQMIEDGKYHGTFDFIFVDAD----------------------------KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred HHHHHHHHHhccccCCcccEEEecCC----------------------------HHHhHHHHHHHHHhcCCCeEEEE
Confidence 98866542 258999999521 13456777888889999999887
No 179
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.02 E-value=8.6e-09 Score=111.58 Aligned_cols=144 Identities=16% Similarity=0.154 Sum_probs=99.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
+.++.+|||+|||.|.=+..+|....+...|+++|+++..++..++|+.+.+. .++.+...|...........||.|
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~---~nv~v~~~D~~~~~~~~~~~fD~I 187 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV---SNVALTHFDGRVFGAALPETFDAI 187 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCchhhhhhhchhhcCeE
Confidence 35788999999999999999998776567999999999999999999998532 247888888754322334679999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCC----ChHHHHHHHHHHhhccccCeEEEEEEcC----CCHHHHHHHHHH
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSN----GLSSIKEIVKNASKYLVKNGLLLIEHGY----NQSNLVRKLLFK 546 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~----gl~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~l~~ll~~ 546 (570)
+.|+|-.-..-.. ..|.....-... -...-.+++..+.++|||||++++.+.. .+...+..++++
T Consensus 188 LvDaPCSG~G~~r-------k~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~ 260 (470)
T PRK11933 188 LLDAPCSGEGTVR-------KDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKET 260 (470)
T ss_pred EEcCCCCCCcccc-------cCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 9999965333221 122211111101 1123468999999999999999886543 223344555665
Q ss_pred CC
Q psy2395 547 YG 548 (570)
Q Consensus 547 ~G 548 (570)
++
T Consensus 261 ~~ 262 (470)
T PRK11933 261 YP 262 (470)
T ss_pred CC
Confidence 53
No 180
>KOG2187|consensus
Probab=99.01 E-value=2.2e-09 Score=113.52 Aligned_cols=159 Identities=21% Similarity=0.276 Sum_probs=112.1
Q ss_pred CCceeecCc----ccccCeeeeecCCccccc--hhHHHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEE
Q psy2395 354 EPIAYIIGK----KEFYGLVLNITSDVLIPR--PETELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEII 426 (570)
Q Consensus 354 ~p~~~i~g~----~~f~~~~~~v~~~~~~pr--~~t~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~ 426 (570)
.|++++.|. -.+.|++|.++|+.|.+. ...+.+...+-++.. +.+..++|++||||.+++++|+.. .+|+
T Consensus 333 ~~~~l~~~~~~I~E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~---~~Vi 409 (534)
T KOG2187|consen 333 KPLQLVGGDPYITESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVI 409 (534)
T ss_pred CCeEEEccccEEEeecCCeEEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc---ccee
Confidence 566665554 356799999999999988 677788777776643 456789999999999999999654 6899
Q ss_pred EEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCC----Ccee-EEEECCCCCCCCCcccCCCCccccccccc
Q psy2395 427 ATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYK----KLFN-IIVANPPYIPKGDIHLNKGDLRFEPINAL 501 (570)
Q Consensus 427 gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~----~~fD-~Iv~NPPy~~~~~~~~~~~~~~~ep~~al 501 (570)
||+++|++++.|+.|+..|+. .+++|++|-+.+..+... ++=+ +++.|||-.
T Consensus 410 GvEi~~~aV~dA~~nA~~Ngi---sNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~-------------------- 466 (534)
T KOG2187|consen 410 GVEISPDAVEDAEKNAQINGI---SNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRK-------------------- 466 (534)
T ss_pred eeecChhhcchhhhcchhcCc---cceeeeecchhhccchhcccCCCCCceEEEECCCcc--------------------
Confidence 999999999999999998632 369999995444332211 2345 778888732
Q ss_pred cccCCChHHHHHHHHHHhhccccCeEEEEEEcCC-CHHHHHHHHH
Q psy2395 502 TDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN-QSNLVRKLLF 545 (570)
Q Consensus 502 ~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~l~~ll~ 545 (570)
|+ ...+++....+-.+--.+++.+... ....+..++.
T Consensus 467 -----Gl--h~~~ik~l~~~~~~~rlvyvSCn~~t~ar~v~~lc~ 504 (534)
T KOG2187|consen 467 -----GL--HMKVIKALRAYKNPRRLVYVSCNPHTAARNVIDLCS 504 (534)
T ss_pred -----cc--cHHHHHHHHhccCccceEEEEcCHHHhhhhHHHhhc
Confidence 22 2455665555555666666665432 3445555554
No 181
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.99 E-value=5e-09 Score=100.97 Aligned_cols=75 Identities=12% Similarity=0.221 Sum_probs=57.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc-cCCCceeEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ-NYKKLFNII 474 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fD~I 474 (570)
+++.+|||+|||+|.++..++... ...++|+|+++.+++.|+.+ +++++++|+.+.++ ..+++||+|
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~----------~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR----------GVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc----------CCeEEEEEhhhcccccCCCCcCEE
Confidence 356799999999999999887654 46789999999999888531 25788888865332 334689999
Q ss_pred EECCCCCC
Q psy2395 475 VANPPYIP 482 (570)
Q Consensus 475 v~NPPy~~ 482 (570)
++|.++..
T Consensus 80 i~~~~l~~ 87 (194)
T TIGR02081 80 ILSQTLQA 87 (194)
T ss_pred EEhhHhHc
Confidence 99977543
No 182
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.98 E-value=1.5e-09 Score=111.08 Aligned_cols=81 Identities=21% Similarity=0.311 Sum_probs=66.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++... .+|+|+|+|+.+++.+++++..++ ...+++++++|+.+... ..||+|+
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~--~~~~v~ii~~Dal~~~~---~~~d~Vv 106 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSP--LASKLEVIEGDALKTEF---PYFDVCV 106 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcC--CCCcEEEEECCHhhhcc---cccCEEE
Confidence 467899999999999999998764 579999999999999999987531 23469999999976322 4699999
Q ss_pred ECCCCCCCC
Q psy2395 476 ANPPYIPKG 484 (570)
Q Consensus 476 ~NPPy~~~~ 484 (570)
+|+||.-..
T Consensus 107 aNlPY~Ist 115 (294)
T PTZ00338 107 ANVPYQISS 115 (294)
T ss_pred ecCCcccCc
Confidence 999997543
No 183
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.98 E-value=1.9e-09 Score=109.47 Aligned_cols=78 Identities=19% Similarity=0.196 Sum_probs=63.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.+++++. ..+++++++|+.+. +..+-.+|.||
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~------~~~v~~i~~D~~~~-~~~~~~~~~vv 110 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFA------EDNLTIIEGDALKV-DLSELQPLKVV 110 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhc------cCceEEEEChhhcC-CHHHcCcceEE
Confidence 467799999999999999999875 389999999999999998764 24699999999763 22111159999
Q ss_pred ECCCCCCC
Q psy2395 476 ANPPYIPK 483 (570)
Q Consensus 476 ~NPPy~~~ 483 (570)
+||||...
T Consensus 111 ~NlPY~is 118 (272)
T PRK00274 111 ANLPYNIT 118 (272)
T ss_pred EeCCccch
Confidence 99999754
No 184
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.98 E-value=2.8e-09 Score=107.46 Aligned_cols=77 Identities=19% Similarity=0.278 Sum_probs=64.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.+++++.. ..+++++++|+.+. +. ..||.|+
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~-----~~~v~ii~~D~~~~-~~--~~~d~Vv 96 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIA-----AGNVEIIEGDALKV-DL--PEFNKVV 96 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhcc-----CCCEEEEEeccccC-Cc--hhceEEE
Confidence 457899999999999999999774 5899999999999999988753 34699999999763 22 3589999
Q ss_pred ECCCCCCC
Q psy2395 476 ANPPYIPK 483 (570)
Q Consensus 476 ~NPPy~~~ 483 (570)
+||||...
T Consensus 97 ~NlPy~i~ 104 (258)
T PRK14896 97 SNLPYQIS 104 (258)
T ss_pred EcCCcccC
Confidence 99999754
No 185
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.96 E-value=9.2e-09 Score=105.98 Aligned_cols=144 Identities=20% Similarity=0.245 Sum_probs=105.8
Q ss_pred Ceeeeec--CCccccchhHHH--HHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHH
Q psy2395 367 GLVLNIT--SDVLIPRPETEL--LVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNA 442 (570)
Q Consensus 367 ~~~~~v~--~~~~~pr~~t~~--l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~ 442 (570)
|..|.++ .-+|.|+-.++. +.++. .++.+|+|+.||.|.+++.+|+.+. .+|+|+|+||.+++..++|+
T Consensus 159 G~~f~vD~~Kv~Fsprl~~ER~Rva~~v-----~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi 231 (341)
T COG2520 159 GCRFKVDVAKVYFSPRLSTERARVAELV-----KEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENI 231 (341)
T ss_pred CEEEEEchHHeEECCCchHHHHHHHhhh-----cCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHH
Confidence 4555555 567888865553 33322 3588999999999999999998874 45999999999999999999
Q ss_pred HhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcc
Q psy2395 443 KKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYL 522 (570)
Q Consensus 443 ~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~L 522 (570)
+.|+ ....+..++||+.+..+.. +.||-|++|-|... ..++..+.+.+
T Consensus 232 ~LN~--v~~~v~~i~gD~rev~~~~-~~aDrIim~~p~~a-----------------------------~~fl~~A~~~~ 279 (341)
T COG2520 232 RLNK--VEGRVEPILGDAREVAPEL-GVADRIIMGLPKSA-----------------------------HEFLPLALELL 279 (341)
T ss_pred HhcC--ccceeeEEeccHHHhhhcc-ccCCEEEeCCCCcc-----------------------------hhhHHHHHHHh
Confidence 9874 3445999999997765532 68999999876421 45667777889
Q ss_pred ccCeEEEE-EEcCC-C-----HHHHHHHHHHCCC
Q psy2395 523 VKNGLLLI-EHGYN-Q-----SNLVRKLLFKYGF 549 (570)
Q Consensus 523 kpgG~l~~-~~~~~-~-----~~~l~~ll~~~Gf 549 (570)
++||++-+ ++... . ...+.....+.|+
T Consensus 280 k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~ 313 (341)
T COG2520 280 KDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGY 313 (341)
T ss_pred hcCcEEEEEeccchhhcccchHHHHHHHHhhccC
Confidence 99999865 33322 2 3556666666664
No 186
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.96 E-value=1.5e-09 Score=100.48 Aligned_cols=78 Identities=28% Similarity=0.359 Sum_probs=58.2
Q ss_pred EEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCC-Cc-eeEEEEC
Q psy2395 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYK-KL-FNIIVAN 477 (570)
Q Consensus 400 ~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~-~~-fD~Iv~N 477 (570)
.|+|++||.|..++.+|+.+ .+|+|+|++|..++.|+.|++-.| ...++.|+++|+++.+.... .. ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYG--v~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYG--VADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT---GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 69999999999999999886 489999999999999999999753 24479999999988665432 22 8999999
Q ss_pred CCCCC
Q psy2395 478 PPYIP 482 (570)
Q Consensus 478 PPy~~ 482 (570)
|||.-
T Consensus 77 PPWGG 81 (163)
T PF09445_consen 77 PPWGG 81 (163)
T ss_dssp --BSS
T ss_pred CCCCC
Confidence 99974
No 187
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.94 E-value=1.4e-08 Score=95.79 Aligned_cols=70 Identities=13% Similarity=0.248 Sum_probs=58.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc-cCCCceeEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ-NYKKLFNII 474 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fD~I 474 (570)
+++.+|||+|||.|.+...|...- +.+++|+|++++.+..+.++ .+.++++|+.+.+. .++++||.|
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~r----------Gv~Viq~Dld~gL~~f~d~sFD~V 79 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVAR----------GVSVIQGDLDEGLADFPDQSFDYV 79 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHc----------CCCEEECCHHHhHhhCCCCCccEE
Confidence 578999999999999998888753 68999999999998776543 26799999988775 445899999
Q ss_pred EEC
Q psy2395 475 VAN 477 (570)
Q Consensus 475 v~N 477 (570)
|++
T Consensus 80 Ils 82 (193)
T PF07021_consen 80 ILS 82 (193)
T ss_pred ehH
Confidence 984
No 188
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.93 E-value=1.6e-08 Score=106.64 Aligned_cols=102 Identities=25% Similarity=0.269 Sum_probs=82.4
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEEC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVAN 477 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~N 477 (570)
+.+|||+.||||..++.++.+.+...+|+++|+|+.+++.+++|++.|+. .++.++++|+...+.....+||+|+.|
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~---~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV---ENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 35899999999999999998743246899999999999999999997631 258999999977665434679999999
Q ss_pred CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 478 PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 478 PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
| |... ..++..+.+.+++||++++.
T Consensus 122 P-fGs~----------------------------~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 122 P-FGTP----------------------------APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C-CCCc----------------------------HHHHHHHHHhcccCCEEEEE
Confidence 9 4311 35677777789999999986
No 189
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.91 E-value=6.7e-09 Score=101.71 Aligned_cols=137 Identities=15% Similarity=0.059 Sum_probs=90.5
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh-------h--cccCCCCEE
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK-------K--LTKYNIPIK 454 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~-------~--~~~~~~~v~ 454 (570)
..|++++......++.+||++|||.|..+..||..+ .+|+|+|+|+.+++.+.+.... + ....+.+++
T Consensus 30 p~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G---~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 106 (226)
T PRK13256 30 EFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKG---VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE 106 (226)
T ss_pred HHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCC---CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence 445555544333456799999999999999999764 6899999999999998652110 0 001234699
Q ss_pred EEEcccccccc--cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 455 FIKSNWYNNLQ--NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 455 ~~~~D~~~~l~--~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
++++|+++..+ ...++||+|+----|+. ++ -+.-.+.++.+.+.|+|||.+++.+
T Consensus 107 ~~~gD~f~l~~~~~~~~~fD~VyDra~~~A------lp-----------------p~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 107 IYVADIFNLPKIANNLPVFDIWYDRGAYIA------LP-----------------NDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred EEEccCcCCCccccccCCcCeeeeehhHhc------CC-----------------HHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 99999988532 22257999875222211 01 1234678888999999999987643
Q ss_pred -cCC----------CHHHHHHHHHH
Q psy2395 533 -GYN----------QSNLVRKLLFK 546 (570)
Q Consensus 533 -~~~----------~~~~l~~ll~~ 546 (570)
... ..+++.+++..
T Consensus 164 ~~~~~~~~GPPf~v~~~e~~~lf~~ 188 (226)
T PRK13256 164 MEHDKKSQTPPYSVTQAELIKNFSA 188 (226)
T ss_pred EecCCCCCCCCCcCCHHHHHHhccC
Confidence 111 24567777754
No 190
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.90 E-value=1.3e-08 Score=111.39 Aligned_cols=167 Identities=21% Similarity=0.225 Sum_probs=109.8
Q ss_pred CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCC---CcEEEEEeCCHHHHHHHHHHHHhhcccCC
Q psy2395 374 SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKN---KIEIIATDISKFALKIAKKNAKKKLTKYN 450 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~---~~~V~gvDis~~al~~A~~n~~~~~~~~~ 450 (570)
..+|+|+..+++|++.+.. .+..+|+|.+||||.+.+..++.... ...++|.|+++....+|+.|+-.++...
T Consensus 166 GEfyTP~~v~~liv~~l~~---~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~- 241 (489)
T COG0286 166 GEFYTPREVSELIVELLDP---EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG- 241 (489)
T ss_pred CccCChHHHHHHHHHHcCC---CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-
Confidence 4568999999999988753 34569999999999998887765531 2679999999999999999998764321
Q ss_pred CCEEEEEccccccccc----CCCceeEEEECCCCCCCCCcccCCCCccccccccccc-cCCChHHHHHHHHHHhhccccC
Q psy2395 451 IPIKFIKSNWYNNLQN----YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTD-YSNGLSSIKEIVKNASKYLVKN 525 (570)
Q Consensus 451 ~~v~~~~~D~~~~l~~----~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~-~~~gl~~~~~~l~~~~~~Lkpg 525 (570)
.+....+|-+..... ..++||+|++||||....+......... ..+....+ ....-.....+++.+...|+||
T Consensus 242 -~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~ 319 (489)
T COG0286 242 -DANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQ-DERFFFYGVFPTKNSADLAFLQHILYKLKPG 319 (489)
T ss_pred -cccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccc-cccccccCCCCCCCchHHHHHHHHHHhcCCC
Confidence 456677776543322 2267999999999974443322111111 11111111 1111122367788888899999
Q ss_pred eEEEEEEcCC------CHHHHHHHHHH
Q psy2395 526 GLLLIEHGYN------QSNLVRKLLFK 546 (570)
Q Consensus 526 G~l~~~~~~~------~~~~l~~ll~~ 546 (570)
|+..++++.+ ....+++.+.+
T Consensus 320 g~aaivl~~gvlfr~~~e~~IR~~l~~ 346 (489)
T COG0286 320 GRAAIVLPDGVLFRGGAEKDIRKDLLE 346 (489)
T ss_pred ceEEEEecCCcCcCCCchHHHHHHHHh
Confidence 9877766542 34556666655
No 191
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.89 E-value=1.8e-09 Score=102.85 Aligned_cols=121 Identities=22% Similarity=0.281 Sum_probs=88.0
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc-cCCCceeEEEE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ-NYKKLFNIIVA 476 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fD~Iv~ 476 (570)
=.++||+|||||..+..+-.+. .+++|||||..|++.|.+.-- --++.++|+...++ ..+++||+|++
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg~--------YD~L~~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKGL--------YDTLYVAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred cceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhccc--------hHHHHHHHHHHHhhhccCCcccchhh
Confidence 4689999999999999987554 579999999999999975421 12344555543333 22478999998
Q ss_pred C--CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc--C-C-------------CHH
Q psy2395 477 N--PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG--Y-N-------------QSN 538 (570)
Q Consensus 477 N--PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~--~-~-------------~~~ 538 (570)
- .||. ..+..++..+...|+|||.|.|.+- . + ...
T Consensus 195 aDVl~Yl---------------------------G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~ 247 (287)
T COG4976 195 ADVLPYL---------------------------GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSES 247 (287)
T ss_pred hhHHHhh---------------------------cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchH
Confidence 3 4444 2346788889999999999998541 1 1 135
Q ss_pred HHHHHHHHCCCeeEEEEe
Q psy2395 539 LVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 539 ~l~~ll~~~Gf~~i~~~~ 556 (570)
.++..+...||.+|.+.+
T Consensus 248 YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 248 YVRALLAASGLEVIAIED 265 (287)
T ss_pred HHHHHHHhcCceEEEeec
Confidence 688899999999987654
No 192
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.88 E-value=8.6e-09 Score=100.96 Aligned_cols=142 Identities=17% Similarity=0.143 Sum_probs=90.9
Q ss_pred HHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH-HHHhhc--------ccCCCCEEEE
Q psy2395 386 LVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK-NAKKKL--------TKYNIPIKFI 456 (570)
Q Consensus 386 l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~-n~~~~~--------~~~~~~v~~~ 456 (570)
|++++......++.+||.+|||.|.....||..+ .+|+|+|+|+.|++.|.+ |..... .....+|+++
T Consensus 26 L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~ 102 (218)
T PF05724_consen 26 LVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIY 102 (218)
T ss_dssp HHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEE
T ss_pred HHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEE
Confidence 3344333233566799999999999999999764 799999999999999843 221000 0012358999
Q ss_pred EcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE-EcC-
Q psy2395 457 KSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE-HGY- 534 (570)
Q Consensus 457 ~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~-~~~- 534 (570)
++|+++..+...++||+|+=---+.. +++ +.-.+..+.+.++|+|||.+++. +-+
T Consensus 103 ~gDfF~l~~~~~g~fD~iyDr~~l~A------lpp-----------------~~R~~Ya~~l~~ll~p~g~~lLi~l~~~ 159 (218)
T PF05724_consen 103 CGDFFELPPEDVGKFDLIYDRTFLCA------LPP-----------------EMRERYAQQLASLLKPGGRGLLITLEYP 159 (218)
T ss_dssp ES-TTTGGGSCHHSEEEEEECSSTTT------S-G-----------------GGHHHHHHHHHHCEEEEEEEEEEEEES-
T ss_pred EcccccCChhhcCCceEEEEeccccc------CCH-----------------HHHHHHHHHHHHHhCCCCcEEEEEEEcC
Confidence 99999854433358999997332221 111 23367888899999999994432 211
Q ss_pred ----------CCHHHHHHHHHHCCCeeEEE
Q psy2395 535 ----------NQSNLVRKLLFKYGFSDIKS 554 (570)
Q Consensus 535 ----------~~~~~l~~ll~~~Gf~~i~~ 554 (570)
-..+++.+++. .+|.+...
T Consensus 160 ~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l 188 (218)
T PF05724_consen 160 QGEMEGPPFSVTEEEVRELFG-PGFEIEEL 188 (218)
T ss_dssp CSCSSSSS----HHHHHHHHT-TTEEEEEE
T ss_pred CcCCCCcCCCCCHHHHHHHhc-CCcEEEEE
Confidence 12467777776 67776443
No 193
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.87 E-value=3.2e-08 Score=95.36 Aligned_cols=135 Identities=21% Similarity=0.244 Sum_probs=94.0
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc--cCCCceeEEE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ--NYKKLFNIIV 475 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~--~~~~~fD~Iv 475 (570)
...+||||||.|.+.+.+|...| +..++|+|++...+..|...+... .-.++.++++|+...+. ..++++|.|.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~---~l~Nv~~~~~da~~~l~~~~~~~~v~~i~ 93 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKR---GLKNVRFLRGDARELLRRLFPPGSVDRIY 93 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHH---TTSSEEEEES-CTTHHHHHSTTTSEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhh---cccceEEEEccHHHHHhhcccCCchheEE
Confidence 34899999999999999999987 799999999999999999988875 33479999999976443 1237999999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC-CHHHHHHHHHHC--CCeeE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN-QSNLVRKLLFKY--GFSDI 552 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~l~~ll~~~--Gf~~i 552 (570)
.|-| .+.+. .+|.. ..+ .-..++..+.+.|+|||.+.+.+... ....+.+.+... +|..+
T Consensus 94 i~FP---DPWpK-----~rH~k-rRl--------~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 94 INFP---DPWPK-----KRHHK-RRL--------VNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp EES--------S-----GGGGG-GST--------TSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred EeCC---CCCcc-----cchhh-hhc--------CCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 9854 11110 01100 011 12678889999999999999877553 356667777773 67665
Q ss_pred E
Q psy2395 553 K 553 (570)
Q Consensus 553 ~ 553 (570)
.
T Consensus 157 ~ 157 (195)
T PF02390_consen 157 E 157 (195)
T ss_dssp -
T ss_pred c
Confidence 3
No 194
>PLN02823 spermine synthase
Probab=98.84 E-value=7.4e-08 Score=100.15 Aligned_cols=140 Identities=15% Similarity=0.250 Sum_probs=95.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhccc-CCCCEEEEEcccccccccCCCceeEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTK-YNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~-~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
+.+.+||.+|+|.|..+..+++..+ ..+|+.||+++..++.|++++..+... .+.+++++.+|+...+....++||+|
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 3567999999999999998887543 468999999999999999998643211 24579999999988776555789999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHH-HHhhccccCeEEEEEEcC----CCHHH---HHHHHHH
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVK-NASKYLVKNGLLLIEHGY----NQSNL---VRKLLFK 546 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~-~~~~~LkpgG~l~~~~~~----~~~~~---l~~ll~~ 546 (570)
+++.+- +... .|-..| +-..+++ .+.+.|+|||++++..+. ...+. +.+.+.+
T Consensus 181 i~D~~d-p~~~----------~~~~~L--------yt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~ 241 (336)
T PLN02823 181 IGDLAD-PVEG----------GPCYQL--------YTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQ 241 (336)
T ss_pred EecCCC-cccc----------Ccchhh--------ccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHH
Confidence 998531 1000 000001 1246776 788999999999876543 12333 3333443
Q ss_pred CCCeeEEEEe
Q psy2395 547 YGFSDIKSWR 556 (570)
Q Consensus 547 ~Gf~~i~~~~ 556 (570)
-|..+..+.
T Consensus 242 -vF~~v~~y~ 250 (336)
T PLN02823 242 -VFKYVVPYT 250 (336)
T ss_pred -hCCCEEEEE
Confidence 366665554
No 195
>KOG4300|consensus
Probab=98.83 E-value=1.3e-08 Score=95.66 Aligned_cols=109 Identities=21% Similarity=0.249 Sum_probs=79.6
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEE-EEEcccccccccCCCceeEEEE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIK-FIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~-~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
...||++|||||..--..- . .+..+|+++|-++.|-+.|.+.+..+ ...++. |+.++..+.....++++|.||+
T Consensus 77 K~~vLEvgcGtG~Nfkfy~-~-~p~~svt~lDpn~~mee~~~ks~~E~---k~~~~~~fvva~ge~l~~l~d~s~DtVV~ 151 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYP-W-KPINSVTCLDPNEKMEEIADKSAAEK---KPLQVERFVVADGENLPQLADGSYDTVVC 151 (252)
T ss_pred ccceEEecccCCCCccccc-C-CCCceEEEeCCcHHHHHHHHHHHhhc---cCcceEEEEeechhcCcccccCCeeeEEE
Confidence 4578999999998754432 1 14789999999999999999998874 334566 8999985533244689999998
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE-EEcCCC
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI-EHGYNQ 536 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~-~~~~~~ 536 (570)
-. .|... +...+.+++..++|+|||++++ +++..+
T Consensus 152 Tl---------------------vLCSv----e~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 152 TL---------------------VLCSV----EDPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred EE---------------------EEecc----CCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 32 11221 2347889999999999999876 665443
No 196
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.82 E-value=4.1e-08 Score=92.92 Aligned_cols=127 Identities=20% Similarity=0.366 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHhhc-------CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCE
Q psy2395 381 PETELLVDLIVKKT-------FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPI 453 (570)
Q Consensus 381 ~~t~~l~~~~~~~~-------~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v 453 (570)
|.+..|..++.... ..++.+|||+|||+|..++.++.... ..+|+.+|.++ .+...+.|+..|+.....++
T Consensus 22 ~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v 99 (173)
T PF10294_consen 22 PAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGSLLDGRV 99 (173)
T ss_dssp -HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT--------
T ss_pred chHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccccccccc
Confidence 55566666666531 23678999999999999999998842 57999999999 99999999998642234568
Q ss_pred EEEEccccccc--c-cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 454 KFIKSNWYNNL--Q-NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 454 ~~~~~D~~~~l--~-~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
.+..-||-+.. . ....+||+|++. ++-|.+ +.+..++..+.++|+++|.+++
T Consensus 100 ~v~~L~Wg~~~~~~~~~~~~~D~Ilas--------------Dv~Y~~-----------~~~~~L~~tl~~ll~~~~~vl~ 154 (173)
T PF10294_consen 100 SVRPLDWGDELDSDLLEPHSFDVILAS--------------DVLYDE-----------ELFEPLVRTLKRLLKPNGKVLL 154 (173)
T ss_dssp EEEE--TTS-HHHHHHS-SSBSEEEEE--------------S--S-G-----------GGHHHHHHHHHHHBTT-TTEEE
T ss_pred cCcEEEecCcccccccccccCCEEEEe--------------cccchH-----------HHHHHHHHHHHHHhCCCCEEEE
Confidence 88888885533 1 112589999982 122222 3567888889999999999777
Q ss_pred EEcC
Q psy2395 531 EHGY 534 (570)
Q Consensus 531 ~~~~ 534 (570)
....
T Consensus 155 ~~~~ 158 (173)
T PF10294_consen 155 AYKR 158 (173)
T ss_dssp EEE-
T ss_pred EeCE
Confidence 6654
No 197
>KOG2899|consensus
Probab=98.77 E-value=2.2e-08 Score=96.36 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=42.5
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
.+..+|||||-+|.+++.+|+.+. ...|.|+||++..+..|++|++.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccc
Confidence 467899999999999999999875 46899999999999999999864
No 198
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=3.7e-07 Score=96.06 Aligned_cols=166 Identities=19% Similarity=0.219 Sum_probs=111.3
Q ss_pred cCCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCC-CcEEEEEeCCHHHHHHHHHHHHhhcccCCC
Q psy2395 373 TSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKN-KIEIIATDISKFALKIAKKNAKKKLTKYNI 451 (570)
Q Consensus 373 ~~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~-~~~V~gvDis~~al~~A~~n~~~~~~~~~~ 451 (570)
..|.+++...+..+...++. +.++.+|||+|++.|.=+..+|....+ +..|+++|+|+.-+...+.|+++.|. .
T Consensus 134 ~~G~~~vQd~sS~l~a~~L~--p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~---~ 208 (355)
T COG0144 134 AEGLIYVQDEASQLPALVLD--PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV---R 208 (355)
T ss_pred hceEEEEcCHHHHHHHHHcC--CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC---C
Confidence 45566666666666555543 467899999999999999999987753 35679999999999999999998532 2
Q ss_pred CEEEEEcccccccc--cCCCceeEEEECCCCCCCCCcccCCCCc-cccccccccccCCChHHHHHHHHHHhhccccCeEE
Q psy2395 452 PIKFIKSNWYNNLQ--NYKKLFNIIVANPPYIPKGDIHLNKGDL-RFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLL 528 (570)
Q Consensus 452 ~v~~~~~D~~~~l~--~~~~~fD~Iv~NPPy~~~~~~~~~~~~~-~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l 528 (570)
++.+.+.|...... ...++||.|+.++|-.........+... ...|.- + ..-.....+++..+.++|||||.+
T Consensus 209 nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~-i---~~l~~lQ~~iL~~a~~~lk~GG~L 284 (355)
T COG0144 209 NVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPED-I---AELAKLQKEILAAALKLLKPGGVL 284 (355)
T ss_pred ceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHH-H---HHHHHHHHHHHHHHHHhcCCCCEE
Confidence 37788877643221 1113699999999965544332222221 111110 0 001134568999999999999999
Q ss_pred EEEEcC----CCHHHHHHHHHHC
Q psy2395 529 LIEHGY----NQSNLVRKLLFKY 547 (570)
Q Consensus 529 ~~~~~~----~~~~~l~~ll~~~ 547 (570)
++.+.. .+...+..++.+.
T Consensus 285 VYSTCS~~~eENE~vV~~~L~~~ 307 (355)
T COG0144 285 VYSTCSLTPEENEEVVERFLERH 307 (355)
T ss_pred EEEccCCchhcCHHHHHHHHHhC
Confidence 886533 4555666777665
No 199
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.77 E-value=8.1e-08 Score=96.57 Aligned_cols=76 Identities=21% Similarity=0.206 Sum_probs=62.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCcee---
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFN--- 472 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD--- 472 (570)
.++.+|||+|||+|.++..+++.+ ..|+++|+|+.+++.++.++.. ..+++++++|+.+... ..||
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~~D~~~~~~---~~~d~~~ 96 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL-----YERLEVIEGDALKVDL---PDFPKQL 96 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc-----CCcEEEEECchhcCCh---hHcCCcc
Confidence 467799999999999999999876 3699999999999999988742 3468999999966332 2466
Q ss_pred EEEECCCCCC
Q psy2395 473 IIVANPPYIP 482 (570)
Q Consensus 473 ~Iv~NPPy~~ 482 (570)
+|++|+||..
T Consensus 97 ~vvsNlPy~i 106 (253)
T TIGR00755 97 KVVSNLPYNI 106 (253)
T ss_pred eEEEcCChhh
Confidence 9999999874
No 200
>KOG2915|consensus
Probab=98.75 E-value=3.3e-07 Score=89.79 Aligned_cols=132 Identities=19% Similarity=0.146 Sum_probs=102.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc-ccCCCceeEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL-QNYKKLFNII 474 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l-~~~~~~fD~I 474 (570)
.++.+|++-|+|||.++.++++...+..+++.+|......+.|++.++..+ .+.++++..-|+...- ......+|.|
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg--i~~~vt~~hrDVc~~GF~~ks~~aDaV 181 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG--IGDNVTVTHRDVCGSGFLIKSLKADAV 181 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC--CCcceEEEEeecccCCccccccccceE
Confidence 688999999999999999999988777899999999999999999999865 5667999999985522 2114689999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--CCHHHHHHHHHHCCCeeE
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--NQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~l~~ll~~~Gf~~i 552 (570)
+.+.|- | -..+..++++||.+|.-++.+.+ .|.....+.|.++||..+
T Consensus 182 FLDlPa----------------P--------------w~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i 231 (314)
T KOG2915|consen 182 FLDLPA----------------P--------------WEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEI 231 (314)
T ss_pred EEcCCC----------------h--------------hhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceE
Confidence 998662 1 12334555578877754444433 667777888899999999
Q ss_pred EEEecCC
Q psy2395 553 KSWRDLS 559 (570)
Q Consensus 553 ~~~~D~~ 559 (570)
....++.
T Consensus 232 ~~vEv~~ 238 (314)
T KOG2915|consen 232 ETVEVLL 238 (314)
T ss_pred EEEEeeh
Confidence 9888776
No 201
>KOG2361|consensus
Probab=98.73 E-value=4.2e-08 Score=94.64 Aligned_cols=129 Identities=21% Similarity=0.258 Sum_probs=92.5
Q ss_pred CEEEEECCcccHHHHHHHHhcCC-CcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc---ccCCCceeEE
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYSKN-KIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL---QNYKKLFNII 474 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~~~-~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l---~~~~~~fD~I 474 (570)
.+||++|||.|+....+.+..+. +..|++.|.||.|++..++|... ...++.-.+.|+...- +...+++|+|
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~----~e~~~~afv~Dlt~~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY----DESRVEAFVWDLTSPSLKEPPEEGSVDII 148 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc----chhhhcccceeccchhccCCCCcCccceE
Confidence 48999999999999999877641 37999999999999999999874 2345666667765432 1223789988
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE-EcCC------------------
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE-HGYN------------------ 535 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~-~~~~------------------ 535 (570)
++---.. | -+-+-+...++++.++|||||.+++- .|..
T Consensus 149 t~IFvLS------------------A-----i~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfY 205 (264)
T KOG2361|consen 149 TLIFVLS------------------A-----IHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFY 205 (264)
T ss_pred EEEEEEe------------------c-----cChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceE
Confidence 7721100 0 11235678999999999999999862 1211
Q ss_pred -----------CHHHHHHHHHHCCCeeEEE
Q psy2395 536 -----------QSNLVRKLLFKYGFSDIKS 554 (570)
Q Consensus 536 -----------~~~~l~~ll~~~Gf~~i~~ 554 (570)
..+.+.+++.++||..++.
T Consensus 206 VRgDGT~~YfF~~eeL~~~f~~agf~~~~~ 235 (264)
T KOG2361|consen 206 VRGDGTRAYFFTEEELDELFTKAGFEEVQL 235 (264)
T ss_pred EccCCceeeeccHHHHHHHHHhcccchhcc
Confidence 1478899999999986543
No 202
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.65 E-value=6.4e-07 Score=91.44 Aligned_cols=162 Identities=23% Similarity=0.252 Sum_probs=110.9
Q ss_pred CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCE
Q psy2395 374 SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPI 453 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v 453 (570)
.+.+.....+..++-.++. +.++..|||+|+|.|.=+..++........|++.|+++.-+...+.|+++.+ ..++
T Consensus 64 ~G~~~vQd~sS~l~~~~L~--~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g---~~~v 138 (283)
T PF01189_consen 64 NGLFYVQDESSQLVALALD--PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG---VFNV 138 (283)
T ss_dssp TTSEEEHHHHHHHHHHHHT--TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----SSE
T ss_pred CCcEEeccccccccccccc--ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC---CceE
Confidence 4555555555555544443 4577899999999999999999887657899999999999999999999853 2357
Q ss_pred EEEEcccccccccC-CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCC----hHHHHHHHHHHhhcc----cc
Q psy2395 454 KFIKSNWYNNLQNY-KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNG----LSSIKEIVKNASKYL----VK 524 (570)
Q Consensus 454 ~~~~~D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~g----l~~~~~~l~~~~~~L----kp 524 (570)
.+...|.....+.. ...||.|+.++|-....... ..|..-+...... ...-.+++..+.+++ +|
T Consensus 139 ~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~-------r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~ 211 (283)
T PF01189_consen 139 IVINADARKLDPKKPESKFDRVLVDAPCSGLGTIR-------RNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP 211 (283)
T ss_dssp EEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTT-------TCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE
T ss_pred EEEeeccccccccccccccchhhcCCCccchhhhh-------hccchhhcccccccchHHHHHHHHHHHHHHhhcccccC
Confidence 78878886653322 24699999999965433221 1222111111111 133468999999999 99
Q ss_pred CeEEEEEE----cCCCHHHHHHHHHHC
Q psy2395 525 NGLLLIEH----GYNQSNLVRKLLFKY 547 (570)
Q Consensus 525 gG~l~~~~----~~~~~~~l~~ll~~~ 547 (570)
||++++.+ +..+...+..+++++
T Consensus 212 gG~lvYsTCS~~~eENE~vV~~fl~~~ 238 (283)
T PF01189_consen 212 GGRLVYSTCSLSPEENEEVVEKFLKRH 238 (283)
T ss_dssp EEEEEEEESHHHGGGTHHHHHHHHHHS
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhC
Confidence 99998866 335566667777765
No 203
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.65 E-value=5.3e-07 Score=87.35 Aligned_cols=121 Identities=25% Similarity=0.257 Sum_probs=90.2
Q ss_pred EEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCC
Q psy2395 401 LLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPY 480 (570)
Q Consensus 401 VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy 480 (570)
|+|+||--|++++.|.+.+. ..+++++|+++..++.|+.|+..++ +..+++++.+|.++.+.. .+..|.|+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~--l~~~i~~rlgdGL~~l~~-~e~~d~ivI---- 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYG--LEDRIEVRLGDGLEVLKP-GEDVDTIVI---- 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT---TTTEEEEE-SGGGG--G-GG---EEEE----
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcC--CcccEEEEECCcccccCC-CCCCCEEEE----
Confidence 68999999999999998875 5689999999999999999999864 455799999999887764 223788877
Q ss_pred CCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEE
Q psy2395 481 IPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 481 ~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~ 553 (570)
| | -|-..+.++++.....+.....|++ .|..+...++++|.++||..+.
T Consensus 73 -------------------A---G-MGG~lI~~ILe~~~~~~~~~~~lIL-qP~~~~~~LR~~L~~~gf~I~~ 121 (205)
T PF04816_consen 73 -------------------A---G-MGGELIIEILEAGPEKLSSAKRLIL-QPNTHAYELRRWLYENGFEIID 121 (205)
T ss_dssp -------------------E---E-E-HHHHHHHHHHTGGGGTT--EEEE-EESS-HHHHHHHHHHTTEEEEE
T ss_pred -------------------e---c-CCHHHHHHHHHhhHHHhccCCeEEE-eCCCChHHHHHHHHHCCCEEEE
Confidence 1 1 1335788999998888776656554 6778999999999999998764
No 204
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.64 E-value=3e-07 Score=90.26 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=88.5
Q ss_pred CEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCC-CEEEEEcccccccccC--CCceeEEE
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNI-PIKFIKSNWYNNLQNY--KKLFNIIV 475 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~-~v~~~~~D~~~~l~~~--~~~fD~Iv 475 (570)
..+||||||.|.+.+.+|+..| ...++|||+....+..|.+.+.+ .+. ++.++++|+...+... +++.|-|.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~----~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKE----LGLKNLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHH----cCCCcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 5899999999999999999987 68999999999999999999887 456 8999999997755432 35999999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN 535 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~ 535 (570)
.|-| .++. -.+|.-+. -....+++.+.+.|+|||.+.+.+...
T Consensus 125 i~FP---DPWp-----KkRH~KRR---------l~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 125 INFP---DPWP-----KKRHHKRR---------LTQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred EECC---CCCC-----Cccccccc---------cCCHHHHHHHHHHccCCCEEEEEecCH
Confidence 9854 1111 01111110 123688999999999999999877553
No 205
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.62 E-value=3.5e-07 Score=98.78 Aligned_cols=105 Identities=14% Similarity=0.221 Sum_probs=73.1
Q ss_pred CCEEEEECCcccHHHHHHHHhc---CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS---KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~---~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
+..|+|+|||+|.++...++.+ ....+|+|||.|+.|+...+..+..++ .+.+|+++++|+.+.... .++|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~--w~~~V~vi~~d~r~v~lp--ekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG--WGDKVTVIHGDMREVELP--EKVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT--TTTTEEEEES-TTTSCHS--S-EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC--CCCeEEEEeCcccCCCCC--CceeEE
Confidence 4689999999999987776543 124699999999999988877655543 456799999999764432 699999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEE
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLL 529 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~ 529 (570)
||-. +..+|.. +.....+..+.++|||||+++
T Consensus 263 VSEl--------------------LGsfg~n---El~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 263 VSEL--------------------LGSFGDN---ELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EE-----------------------BTTBTT---TSHHHHHHHGGGGEEEEEEEE
T ss_pred EEec--------------------cCCcccc---ccCHHHHHHHHhhcCCCCEEe
Confidence 9921 1112211 234567888899999999876
No 206
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.61 E-value=1.7e-06 Score=86.32 Aligned_cols=149 Identities=13% Similarity=0.159 Sum_probs=110.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCC-CcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc--ccCCCcee
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKN-KIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL--QNYKKLFN 472 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~-~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l--~~~~~~fD 472 (570)
..+.+||||+||.|...+-.....+. ...|...|.|+..++..++-++.++ +..-++|.++|+++.. .......+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g--L~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG--LEDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC--CccceEEEecCCCCHhHhhccCCCCC
Confidence 36789999999999998887776653 3689999999999999999998754 3334699999998752 22234578
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC----------------
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ---------------- 536 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------- 536 (570)
+++..--|-- | ..-+.+...+..+...+.|||++++..-+++
T Consensus 212 l~iVsGL~El-------------------F---~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g 269 (311)
T PF12147_consen 212 LAIVSGLYEL-------------------F---PDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDG 269 (311)
T ss_pred EEEEecchhh-------------------C---CcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCC
Confidence 7777433211 1 1124567788889999999999987542221
Q ss_pred ---------HHHHHHHHHHCCCeeEEEEecCCCCceEEEEE
Q psy2395 537 ---------SNLVRKLLFKYGFSDIKSWRDLSGIERVTQGK 568 (570)
Q Consensus 537 ---------~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~ 568 (570)
..++.+++..+||..+..+-|-.|+=-|.+|+
T Consensus 270 ~~WvMRrRsq~EmD~Lv~~aGF~K~~q~ID~~GIFTVSlA~ 310 (311)
T PF12147_consen 270 KAWVMRRRSQAEMDQLVEAAGFEKIDQRIDEWGIFTVSLAR 310 (311)
T ss_pred CceEEEecCHHHHHHHHHHcCCchhhheeccCCceEEEeec
Confidence 35678888899999998888999986666664
No 207
>PRK04148 hypothetical protein; Provisional
Probab=98.60 E-value=2e-07 Score=83.47 Aligned_cols=81 Identities=23% Similarity=0.326 Sum_probs=61.0
Q ss_pred HHHHHHhhcC-CCCCEEEEECCcccH-HHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc
Q psy2395 386 LVDLIVKKTF-EKKIKLLEMGTGSGA-IAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN 463 (570)
Q Consensus 386 l~~~~~~~~~-~~~~~VLDlGcGtG~-i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~ 463 (570)
+.+++..... .++.+|+|+|||+|. ++..|++. +..|+|+|+++.+++.|+.+. ++++.+|++++
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~~----------~~~v~dDlf~p 70 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKLG----------LNAFVDDLFNP 70 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHhC----------CeEEECcCCCC
Confidence 3344444332 245789999999996 88888865 479999999999998887652 57999999986
Q ss_pred cccCCCceeEEEE-CCC
Q psy2395 464 LQNYKKLFNIIVA-NPP 479 (570)
Q Consensus 464 l~~~~~~fD~Iv~-NPP 479 (570)
....-..+|+|.+ +||
T Consensus 71 ~~~~y~~a~liysirpp 87 (134)
T PRK04148 71 NLEIYKNAKLIYSIRPP 87 (134)
T ss_pred CHHHHhcCCEEEEeCCC
Confidence 5544468999998 465
No 208
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.60 E-value=4e-07 Score=87.07 Aligned_cols=190 Identities=16% Similarity=0.239 Sum_probs=115.8
Q ss_pred ccCee-eeecCCccccc-hhHHHHHHHHHhhcC-------CCCCEEEEECCcccHHHHHHH-HhcCCCcEEEEEeCCHHH
Q psy2395 365 FYGLV-LNITSDVLIPR-PETELLVDLIVKKTF-------EKKIKLLEMGTGSGAIAIAIA-IYSKNKIEIIATDISKFA 434 (570)
Q Consensus 365 f~~~~-~~v~~~~~~pr-~~t~~l~~~~~~~~~-------~~~~~VLDlGcGtG~i~l~la-~~~~~~~~V~gvDis~~a 434 (570)
||+.+ +.++++.+.|. |.....+..+.+.+. .+..++||||+|.-|+=-.+- +++ +++.+|.|||+.+
T Consensus 37 fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eY--gwrfvGseid~~s 114 (292)
T COG3129 37 FYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEY--GWRFVGSEIDSQS 114 (292)
T ss_pred hcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceee--cceeecCccCHHH
Confidence 55655 77888999887 655555555554432 356789999999998855554 333 6899999999999
Q ss_pred HHHHHHHHHhhcccCCCCEEEEEc-c---cccccccCCCceeEEEECCCCCCCCCcccCCCC-----c--cccccccc--
Q psy2395 435 LKIAKKNAKKKLTKYNIPIKFIKS-N---WYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGD-----L--RFEPINAL-- 501 (570)
Q Consensus 435 l~~A~~n~~~~~~~~~~~v~~~~~-D---~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~-----~--~~ep~~al-- 501 (570)
++.|+.++..|-. +...+.+... | ++..+....+.||+++|||||+........... + .-.|...+
T Consensus 115 l~sA~~ii~~N~~-l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s~~da~~gsqrk~~nl~g~l~~~~~~~~ 193 (292)
T COG3129 115 LSSAKAIISANPG-LERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDSAADARAGSQRKRRNLGGELGPTNKLDA 193 (292)
T ss_pred HHHHHHHHHcCcc-hhhheeEEeccCccccccccccccceeeeEecCCCcchhHHHHHhcccCCcccccccccccccchh
Confidence 9999999987610 1223444432 2 334444445789999999999875332111000 0 00011111
Q ss_pred --cccC--------CChHHHHHHHHHHhhccccCeEEE-EEEcCCCHHHHHHHHHHCCCeeEEEEec
Q psy2395 502 --TDYS--------NGLSSIKEIVKNASKYLVKNGLLL-IEHGYNQSNLVRKLLFKYGFSDIKSWRD 557 (570)
Q Consensus 502 --~~~~--------~gl~~~~~~l~~~~~~LkpgG~l~-~~~~~~~~~~l~~ll~~~Gf~~i~~~~D 557 (570)
+|+. ....++..++.++..+-+.-=||. ++.+..+.+.+.+.+...|-..+....-
T Consensus 194 lnfggq~qelwCegGe~afi~~mv~es~afakqv~WfttLisk~snlp~l~~~l~~~ga~~v~~~em 260 (292)
T COG3129 194 LNFGGQQQELWCEGGEVAFIKKMVEESRAFAKQVFWFTTLISKGSNLPPLYRALTDVGAVKVVKKEM 260 (292)
T ss_pred hhccCCceEEEecCcchhhHHHHHHHHHHHhhheehheeecCCcCCCHHHHHHHHHhcceeeeehhh
Confidence 1111 123567777777775555443432 2335567788888888888766654443
No 209
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=1.9e-07 Score=92.70 Aligned_cols=81 Identities=19% Similarity=0.148 Sum_probs=65.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++..|||||+|.|.++..|++.+ .+|+++|+|+.++...++... ...+++++.+|+++.....-..++.||
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~-----~~~n~~vi~~DaLk~d~~~l~~~~~vV 100 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA-----PYDNLTVINGDALKFDFPSLAQPYKVV 100 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc-----cccceEEEeCchhcCcchhhcCCCEEE
Confidence 457899999999999999999875 579999999999999988875 245799999999774321001689999
Q ss_pred ECCCCCCCC
Q psy2395 476 ANPPYIPKG 484 (570)
Q Consensus 476 ~NPPy~~~~ 484 (570)
+|.||.-+.
T Consensus 101 aNlPY~Iss 109 (259)
T COG0030 101 ANLPYNISS 109 (259)
T ss_pred EcCCCcccH
Confidence 999997543
No 210
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.57 E-value=4.5e-07 Score=84.66 Aligned_cols=115 Identities=15% Similarity=0.093 Sum_probs=78.9
Q ss_pred EEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccC
Q psy2395 426 IATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYS 505 (570)
Q Consensus 426 ~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~ 505 (570)
+|+|+|+.|++.|+++..........+++|+++|+.+ ++..+++||+|+++--....
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~v~~~~~l~~~---------------------- 57 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAID-LPFDDCEFDAVTMGYGLRNV---------------------- 57 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhh-CCCCCCCeeEEEecchhhcC----------------------
Confidence 4899999999999877653111112369999999955 55556789999995321110
Q ss_pred CChHHHHHHHHHHhhccccCeEEEEE-EcCC-----------------------------------------CHHHHHHH
Q psy2395 506 NGLSSIKEIVKNASKYLVKNGLLLIE-HGYN-----------------------------------------QSNLVRKL 543 (570)
Q Consensus 506 ~gl~~~~~~l~~~~~~LkpgG~l~~~-~~~~-----------------------------------------~~~~l~~l 543 (570)
.....+++++.++|||||.+++. +... ..+++.++
T Consensus 58 ---~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~l 134 (160)
T PLN02232 58 ---VDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETL 134 (160)
T ss_pred ---CCHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHH
Confidence 12368899999999999999753 2211 13567888
Q ss_pred HHHCCCeeEEEEecCCCCceEEE
Q psy2395 544 LFKYGFSDIKSWRDLSGIERVTQ 566 (570)
Q Consensus 544 l~~~Gf~~i~~~~D~~g~~R~~~ 566 (570)
|+++||+.+..+.-..|.-.+.+
T Consensus 135 l~~aGF~~~~~~~~~~g~~~~~~ 157 (160)
T PLN02232 135 ALEAGFSSACHYEISGGFMGNLV 157 (160)
T ss_pred HHHcCCCcceEEECcchHhHeeE
Confidence 99999999876665555544433
No 211
>KOG1663|consensus
Probab=98.57 E-value=7.9e-07 Score=85.64 Aligned_cols=119 Identities=17% Similarity=0.286 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccc
Q psy2395 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNW 460 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~ 460 (570)
|+--.++..+++.. .++++||+|.=||+-++.+|...|.+++|+++|+++.+.+++.+-.+..+ ....|+++++++
T Consensus 59 ~d~g~fl~~li~~~--~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag--v~~KI~~i~g~a 134 (237)
T KOG1663|consen 59 PDKGQFLQMLIRLL--NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG--VDHKITFIEGPA 134 (237)
T ss_pred hHHHHHHHHHHHHh--CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc--ccceeeeeecch
Confidence 33444555555543 56799999999999999999999989999999999999999988877643 344799999999
Q ss_pred ccccccC-----CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 461 YNNLQNY-----KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 461 ~~~l~~~-----~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
.+.+... .+.||++|.+- ..+.|...++++.++|++||.+++.
T Consensus 135 ~esLd~l~~~~~~~tfDfaFvDa----------------------------dK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 135 LESLDELLADGESGTFDFAFVDA----------------------------DKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred hhhHHHHHhcCCCCceeEEEEcc----------------------------chHHHHHHHHHHHhhcccccEEEEe
Confidence 7765421 36899999842 1234567888888899999999873
No 212
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.55 E-value=7.2e-07 Score=92.71 Aligned_cols=115 Identities=16% Similarity=0.247 Sum_probs=77.5
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcc-------cCCCCEEEEEcccccc-----c
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT-------KYNIPIKFIKSNWYNN-----L 464 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~-------~~~~~v~~~~~D~~~~-----l 464 (570)
++.+|||+|||-|....-+.... -..++|+||++.+++.|++....... .......|+.+|.+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 67899999999999888777654 47999999999999999998832110 0123477899998753 1
Q ss_pred ccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 465 QNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 465 ~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
.....+||+|-|-...+- ++ ...+..+.++..+...|+|||+++..++.
T Consensus 140 ~~~~~~FDvVScQFalHY-----------------~F----ese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHY-----------------AF----ESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp SSTTS-EEEEEEES-GGG-----------------GG----SSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cccCCCcceeehHHHHHH-----------------hc----CCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 221258999998432210 11 12245688999999999999999987764
No 213
>KOG1499|consensus
Probab=98.54 E-value=2.8e-07 Score=93.98 Aligned_cols=74 Identities=24% Similarity=0.278 Sum_probs=62.1
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
+++.|||+|||||.+++..|+.+ ..+|+|||.|.-+ +.|++.+..|+ ....+++++|.+.+. ..+.++.|+|++
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia-~~a~~iv~~N~--~~~ii~vi~gkvEdi-~LP~eKVDiIvS 133 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIA-DFARKIVKDNG--LEDVITVIKGKVEDI-ELPVEKVDIIVS 133 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHHH-HHHHHHHHhcC--ccceEEEeecceEEE-ecCccceeEEee
Confidence 57899999999999999999998 4799999998766 99999998864 444699999998664 222479999999
No 214
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.54 E-value=2.3e-06 Score=86.76 Aligned_cols=113 Identities=18% Similarity=0.299 Sum_probs=88.5
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhccc-CCCCEEEEEcccccccccCCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTK-YNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~-~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.+.+||-+|-|.|..+..+++..+ ..+++.|||++..++.|++.+...... .+.++.++.+|..+.+.....+||+|+
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 346999999999999999998865 579999999999999999988754211 246899999999988876556899999
Q ss_pred EC--CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 476 AN--PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 476 ~N--PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
+| .|-.+. .+| +-..|++.+.+.|+++|+++...+
T Consensus 155 ~D~tdp~gp~---------------~~L--------ft~eFy~~~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 155 VDSTDPVGPA---------------EAL--------FTEEFYEGCRRALKEDGIFVAQAG 191 (282)
T ss_pred EcCCCCCCcc---------------ccc--------CCHHHHHHHHHhcCCCcEEEEecC
Confidence 97 221111 122 226888999999999999988643
No 215
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.54 E-value=1.6e-06 Score=86.60 Aligned_cols=147 Identities=19% Similarity=0.283 Sum_probs=98.1
Q ss_pred HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhccc-CCCCEEEEEcccc
Q psy2395 383 TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTK-YNIPIKFIKSNWY 461 (570)
Q Consensus 383 t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~-~~~~v~~~~~D~~ 461 (570)
.+.|+...+.. .+++.+||=||-|.|..+..+.+..+ ..+|+.||+++..++.|++.+...... .+.+++++.+|..
T Consensus 63 ~e~l~h~~~~~-~~~p~~VLiiGgG~G~~~~ell~~~~-~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~ 140 (246)
T PF01564_consen 63 HEMLVHPPLLL-HPNPKRVLIIGGGDGGTARELLKHPP-VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGR 140 (246)
T ss_dssp HHHHHHHHHHH-SSST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHH
T ss_pred HHHHhhhHhhc-CCCcCceEEEcCCChhhhhhhhhcCC-cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhH
Confidence 34454444332 24678999999999999999986643 479999999999999999987653211 3457999999998
Q ss_pred cccccCCC-ceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE--cCCCHH
Q psy2395 462 NNLQNYKK-LFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH--GYNQSN 538 (570)
Q Consensus 462 ~~l~~~~~-~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~ 538 (570)
..+....+ +||+|+.+.+- +.. |...+ +-..+++.+.+.|+|+|.+++-. +..+..
T Consensus 141 ~~l~~~~~~~yDvIi~D~~d-p~~------------~~~~l--------~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~ 199 (246)
T PF01564_consen 141 KFLKETQEEKYDVIIVDLTD-PDG------------PAPNL--------FTREFYQLCKRRLKPDGVLVLQAGSPFLHPE 199 (246)
T ss_dssp HHHHTSSST-EEEEEEESSS-TTS------------CGGGG--------SSHHHHHHHHHHEEEEEEEEEEEEETTTTHH
T ss_pred HHHHhccCCcccEEEEeCCC-CCC------------Ccccc--------cCHHHHHHHHhhcCCCcEEEEEccCcccchH
Confidence 87766556 89999997642 111 00011 22688899999999999998854 344444
Q ss_pred HH---HHHHHHCCCeeEE
Q psy2395 539 LV---RKLLFKYGFSDIK 553 (570)
Q Consensus 539 ~l---~~ll~~~Gf~~i~ 553 (570)
.+ .+.+++. |..+.
T Consensus 200 ~~~~i~~tl~~~-F~~v~ 216 (246)
T PF01564_consen 200 LFKSILKTLRSV-FPQVK 216 (246)
T ss_dssp HHHHHHHHHHTT-SSEEE
T ss_pred HHHHHHHHHHHh-CCceE
Confidence 43 3444444 44443
No 216
>KOG1661|consensus
Probab=98.53 E-value=9.5e-07 Score=83.62 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=78.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcc------cC-CCCEEEEEccccccccc
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLT------KY-NIPIKFIKSNWYNNLQN 466 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~------~~-~~~v~~~~~D~~~~l~~ 466 (570)
..++.++||+|+|||+++..+++.. ..+..++|||.-++.++.+++|+..... .. ..++.++.||.....+.
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 3578999999999999999998654 3344459999999999999999986420 01 12588999999776554
Q ss_pred CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 467 YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
..+||.|.+-. ...++.+...+.|++||.+++-.+.
T Consensus 160 -~a~YDaIhvGA-------------------------------aa~~~pq~l~dqL~~gGrllip~~~ 195 (237)
T KOG1661|consen 160 -QAPYDAIHVGA-------------------------------AASELPQELLDQLKPGGRLLIPVGQ 195 (237)
T ss_pred -cCCcceEEEcc-------------------------------CccccHHHHHHhhccCCeEEEeecc
Confidence 46899999821 0123344455589999999886654
No 217
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.51 E-value=2.9e-06 Score=81.29 Aligned_cols=144 Identities=15% Similarity=0.120 Sum_probs=98.4
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc-ccc------CCC
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN-LQN------YKK 469 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~-l~~------~~~ 469 (570)
.+.+|||||||||.-+..+|..+| ..+-.-.|.++..+.-.+..+...+..+ . ..-+.-|+... .+. ...
T Consensus 25 ~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~N-v-~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 25 SGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPN-V-RPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred cCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcc-c-CCCeEeecCCCCCccccccccCCC
Confidence 333699999999999999999997 5888899999999877666665432211 1 12233444332 111 235
Q ss_pred ceeEEEE-CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC-------------
Q psy2395 470 LFNIIVA-NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN------------- 535 (570)
Q Consensus 470 ~fD~Iv~-NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~------------- 535 (570)
+||+|++ |.-.+ ........+++.+.+.|++||.|++.-|+.
T Consensus 102 ~~D~i~~~N~lHI------------------------~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~F 157 (204)
T PF06080_consen 102 SFDAIFCINMLHI------------------------SPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAF 157 (204)
T ss_pred CcceeeehhHHHh------------------------cCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHH
Confidence 8999998 22111 123456889999999999999988743331
Q ss_pred --------------CHHHHHHHHHHCCCeeEEEEecCCCCceEEEEE
Q psy2395 536 --------------QSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGK 568 (570)
Q Consensus 536 --------------~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~ 568 (570)
..+.+.++..++|+...+.+ ++....++++-+
T Consensus 158 D~sLr~rdp~~GiRD~e~v~~lA~~~GL~l~~~~-~MPANN~~Lvfr 203 (204)
T PF06080_consen 158 DASLRSRDPEWGIRDIEDVEALAAAHGLELEEDI-DMPANNLLLVFR 203 (204)
T ss_pred HHHHhcCCCCcCccCHHHHHHHHHHCCCccCccc-ccCCCCeEEEEe
Confidence 14678888899999865444 677777877755
No 218
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.45 E-value=1.1e-05 Score=78.82 Aligned_cols=131 Identities=18% Similarity=0.342 Sum_probs=82.8
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc-CCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN-YKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~-~~~~fD~Iv 475 (570)
.+.+||=+|=+- .+++++|..+. ..+|+-+||++..++..++.+... +.+++.+..|+..++|. ..++||+++
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~----gl~i~~~~~DlR~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGL-PKRITVVDIDERLLDFINRVAEEE----GLPIEAVHYDLRDPLPEELRGKFDVFF 117 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHH----T--EEEE---TTS---TTTSS-BSEEE
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHc----CCceEEEEecccccCCHHHhcCCCEEE
Confidence 577899888432 45666665554 479999999999999999999874 55699999999998874 248999999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCe-EEEEEEcCCC--H---HHHHHHHHHCCC
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNG-LLLIEHGYNQ--S---NLVRKLLFKYGF 549 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG-~l~~~~~~~~--~---~~l~~ll~~~Gf 549 (570)
+||||-. +-+.-|+......||..| ..++.++... . ..+++.+.+.||
T Consensus 118 TDPPyT~--------------------------~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl 171 (243)
T PF01861_consen 118 TDPPYTP--------------------------EGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGL 171 (243)
T ss_dssp E---SSH--------------------------HHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--
T ss_pred eCCCCCH--------------------------HHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCc
Confidence 9999963 345778888888998766 6677776544 2 367888889999
Q ss_pred eeEEEEecCC
Q psy2395 550 SDIKSWRDLS 559 (570)
Q Consensus 550 ~~i~~~~D~~ 559 (570)
.+..++++++
T Consensus 172 ~i~dii~~Fn 181 (243)
T PF01861_consen 172 VITDIIPDFN 181 (243)
T ss_dssp EEEEEEEEEE
T ss_pred CHHHHHhhhc
Confidence 9888877653
No 219
>KOG2912|consensus
Probab=98.42 E-value=5.7e-06 Score=82.66 Aligned_cols=200 Identities=20% Similarity=0.214 Sum_probs=124.1
Q ss_pred CeeeeecCCccccc-hhHHHHHHHHHhhcC---CCCCE---EEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy2395 367 GLVLNITSDVLIPR-PETELLVDLIVKKTF---EKKIK---LLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAK 439 (570)
Q Consensus 367 ~~~~~v~~~~~~pr-~~t~~l~~~~~~~~~---~~~~~---VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~ 439 (570)
++...++++.++|+ |..-..+.++-+.+. ....+ =+|||+|+-++--.+..... ++...|+|++...+..|+
T Consensus 65 gl~veiP~grLcPtVPnR~nYihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~-n~~f~~teidd~s~~~a~ 143 (419)
T KOG2912|consen 65 GLSVEIPLGRLCPTVPNRLNYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQN-NWYFLATEIDDMSFNYAK 143 (419)
T ss_pred CceEecCccccCCCCccchhhHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhc-cceeeeeeccccccchhh
Confidence 56677789999999 555555555554432 12222 48999999888655543322 588999999999999999
Q ss_pred HHHHhhcccCCCCEEEEEcccccc-----ccc-CCCceeEEEECCCCCCCCCcccCCCC---ccccccccccccCC----
Q psy2395 440 KNAKKKLTKYNIPIKFIKSNWYNN-----LQN-YKKLFNIIVANPPYIPKGDIHLNKGD---LRFEPINALTDYSN---- 506 (570)
Q Consensus 440 ~n~~~~~~~~~~~v~~~~~D~~~~-----l~~-~~~~fD~Iv~NPPy~~~~~~~~~~~~---~~~ep~~al~~~~~---- 506 (570)
.|...|+ +...+.+++....+. ... .+.-||++.|||||+......-..+. .+--|+.+.+|+..
T Consensus 144 snV~qn~--lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNPPFfe~~~Ea~~n~~~s~~rtpp~~vc~gg~~e~v~ 221 (419)
T KOG2912|consen 144 SNVEQNN--LSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNPPFFENQLEAKGNNSRSPRRTPPSSVCTGGSQEFVS 221 (419)
T ss_pred ccccccc--cccceeeEEecchhhcchhhhccCccceeeEEecCCchhhchhhhccccccCCCCCCcccccccchhHHHh
Confidence 9999864 333455554422111 111 12459999999999976332211111 12345555555432
Q ss_pred ---ChHHHHHHHHHHhhccccCeEEE-EEEcC-CCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEEeC
Q psy2395 507 ---GLSSIKEIVKNASKYLVKNGLLL-IEHGY-NQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGKIS 570 (570)
Q Consensus 507 ---gl~~~~~~l~~~~~~LkpgG~l~-~~~~~-~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~~ 570 (570)
..++..+++..... |+.+=..+ ..+|- .....+..-|.+.|-..+.+..--.|...-+..-||
T Consensus 222 eggev~fvnRiitds~~-lr~~IrwYT~MlGKKsslk~l~~kL~e~gv~kv~itel~qGkTkRW~LaWS 289 (419)
T KOG2912|consen 222 EGGEVSFVNRIITDSFV-LRKRIRWYTCMLGKKSSLKPLISKLREQGVTKVKITELVQGKTKRWGLAWS 289 (419)
T ss_pred hccHHHHHHHHHHHHHH-hhhcceEEeeecccccccHHHHHHHHHcCCceEEEEEeeccccceeeEEee
Confidence 23455566655442 23332222 23332 456778888999998888888888888876666665
No 220
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=98.42 E-value=4e-06 Score=79.74 Aligned_cols=136 Identities=13% Similarity=0.187 Sum_probs=79.3
Q ss_pred cchhHHHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHHHhh-----------
Q psy2395 379 PRPETELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSK-NKIEIIATDISKFALKIAKKNAKKK----------- 445 (570)
Q Consensus 379 pr~~t~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~----------- 445 (570)
|..-+..+.+..+..+. ..+.+++|.|||+|++...+....+ .-..|+|.|||++++++|++|+...
T Consensus 32 PVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~e 111 (246)
T PF11599_consen 32 PVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREE 111 (246)
T ss_dssp -HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHH
Confidence 44444555566655543 4567999999999999877765432 1257999999999999999997521
Q ss_pred ----------------------------cccCCCCEEEEEcccccccc----cCCCceeEEEECCCCCCCCCcccCCCCc
Q psy2395 446 ----------------------------LTKYNIPIKFIKSNWYNNLQ----NYKKLFNIIVANPPYIPKGDIHLNKGDL 493 (570)
Q Consensus 446 ----------------------------~~~~~~~v~~~~~D~~~~l~----~~~~~fD~Iv~NPPy~~~~~~~~~~~~~ 493 (570)
..+......+.+.|++++.. ......|+|+++.||....+|.
T Consensus 112 L~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~------ 185 (246)
T PF11599_consen 112 LRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQ------ 185 (246)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTT------
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCccccccc------
Confidence 00011246788999987432 1123479999999998765441
Q ss_pred cccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 494 RFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 494 ~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
++.+-+-...++..+...|-+++++.+
T Consensus 186 ----------g~~~~~p~~~ml~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 186 ----------GEGSGGPVAQMLNSLAPVLPERSVVAV 212 (246)
T ss_dssp ----------S---HHHHHHHHHHHHCCS-TT-EEEE
T ss_pred ----------CCCCCCcHHHHHHHHHhhCCCCcEEEE
Confidence 112334568999999999954555554
No 221
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.40 E-value=3.5e-06 Score=80.25 Aligned_cols=119 Identities=18% Similarity=0.315 Sum_probs=87.6
Q ss_pred CEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECC
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANP 478 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NP 478 (570)
.+++|+|+|.|.-++.+|-..| ..+++.+|.+..-+...+.-+...++ .+++++++.+.+ .....+||+|++-
T Consensus 50 ~~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L---~nv~v~~~R~E~--~~~~~~fd~v~aR- 122 (184)
T PF02527_consen 50 KKVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGL---SNVEVINGRAEE--PEYRESFDVVTAR- 122 (184)
T ss_dssp SEEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT----SSEEEEES-HHH--TTTTT-EEEEEEE-
T ss_pred ceEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCC---CCEEEEEeeecc--cccCCCccEEEee-
Confidence 3899999999999999998886 68999999999998888887776432 259999999966 2334789999991
Q ss_pred CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHH---HHHCCCeeE
Q psy2395 479 PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKL---LFKYGFSDI 552 (570)
Q Consensus 479 Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~l---l~~~Gf~~i 552 (570)
|+ ..+..+++.+..+|++||.+++.-|....+++.+. +...|....
T Consensus 123 ---------------------Av-------~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~ 171 (184)
T PF02527_consen 123 ---------------------AV-------APLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVL 171 (184)
T ss_dssp ---------------------SS-------SSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEE
T ss_pred ---------------------hh-------cCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEe
Confidence 11 23468888999999999999998887766655443 444555543
No 222
>KOG2671|consensus
Probab=98.40 E-value=2.9e-07 Score=92.81 Aligned_cols=132 Identities=20% Similarity=0.229 Sum_probs=89.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHH-------HHHHHHHhhcccCCCCEEEEEcccccccccC
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALK-------IAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY 467 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~-------~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~ 467 (570)
..+++.|.|...|||.+.++.|+.+ +.|+|.||+-.++. ..+.|+++.+. ...-+.++.+|...+....
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FG---a~viGtDIDyr~vragrg~~~si~aNFkQYg~-~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFG---AYVIGTDIDYRTVRAGRGEDESIKANFKQYGS-SSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhc---ceeeccccchheeecccCCCcchhHhHHHhCC-cchhhheeeecccCcchhh
Confidence 4688999999999999999999764 78999999999887 23456655421 1113778899987654433
Q ss_pred CCceeEEEECCCCCCCCCcccC--CCCcc---------ccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 468 KKLFNIIVANPPYIPKGDIHLN--KGDLR---------FEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~~~~~~~~~--~~~~~---------~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
...||.|||+|||.-....... ...++ |=|... ...-.+.+..++.-+.+.|..||++++-.+
T Consensus 282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~---~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTE---QYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccc---hhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 5789999999999865432211 00011 111110 001125567899999999999999987554
No 223
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.40 E-value=4.1e-06 Score=83.50 Aligned_cols=97 Identities=22% Similarity=0.304 Sum_probs=74.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.+..+|+|+|+|+|.++..+++.+| +.+++..|. |..++.+++ ..+++++.+|+++.++ . +|+++
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~~~~---------~~rv~~~~gd~f~~~P---~-~D~~~ 163 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDL-PEVIEQAKE---------ADRVEFVPGDFFDPLP---V-ADVYL 163 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE--HHHHCCHHH---------TTTEEEEES-TTTCCS---S-ESEEE
T ss_pred cCccEEEeccCcchHHHHHHHHHCC-CCcceeecc-Hhhhhcccc---------ccccccccccHHhhhc---c-cccee
Confidence 3556899999999999999999997 689999999 999998887 2369999999986544 3 99999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccC--eEEEE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKN--GLLLI 530 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkpg--G~l~~ 530 (570)
..--.+ .-+-+....++++++..|+|| |.+++
T Consensus 164 l~~vLh-----------------------~~~d~~~~~iL~~~~~al~pg~~g~llI 197 (241)
T PF00891_consen 164 LRHVLH-----------------------DWSDEDCVKILRNAAAALKPGKDGRLLI 197 (241)
T ss_dssp EESSGG-----------------------GS-HHHHHHHHHHHHHHSEECTTEEEEE
T ss_pred eehhhh-----------------------hcchHHHHHHHHHHHHHhCCCCCCeEEE
Confidence 831111 111245578999999999999 99877
No 224
>KOG0820|consensus
Probab=98.40 E-value=1.7e-06 Score=84.95 Aligned_cols=82 Identities=17% Similarity=0.281 Sum_probs=66.8
Q ss_pred cCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeE
Q psy2395 394 TFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 394 ~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
..+++..||++|-|||+++..|...+ .+|+|+|+||.|+....+..+- .......+++.||++.... ..||.
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~g--tp~~~kLqV~~gD~lK~d~---P~fd~ 126 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQG--TPKSGKLQVLHGDFLKTDL---PRFDG 126 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcC--CCccceeeEEecccccCCC---cccce
Confidence 34678899999999999999999765 6999999999999998888762 2233569999999977432 46999
Q ss_pred EEECCCCCCC
Q psy2395 474 IVANPPYIPK 483 (570)
Q Consensus 474 Iv~NPPy~~~ 483 (570)
+|+|.||--+
T Consensus 127 cVsNlPyqIS 136 (315)
T KOG0820|consen 127 CVSNLPYQIS 136 (315)
T ss_pred eeccCCcccc
Confidence 9999998544
No 225
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.38 E-value=1.1e-06 Score=89.65 Aligned_cols=79 Identities=19% Similarity=0.070 Sum_probs=64.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCC---Ccee
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYK---KLFN 472 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~---~~fD 472 (570)
.++..++|.+||.|..+..+++.+++.++|+|+|.|+.|++.|++++.. ..+++++++|+.+...... .++|
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----~~ri~~i~~~f~~l~~~l~~~~~~vD 92 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----FGRFTLVHGNFSNLKEVLAEGLGKVD 92 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----CCcEEEEeCCHHHHHHHHHcCCCccC
Confidence 4677999999999999999999876568999999999999999988752 3469999999976432222 2799
Q ss_pred EEEECCC
Q psy2395 473 IIVANPP 479 (570)
Q Consensus 473 ~Iv~NPP 479 (570)
.|++|.-
T Consensus 93 gIl~DLG 99 (296)
T PRK00050 93 GILLDLG 99 (296)
T ss_pred EEEECCC
Confidence 9999754
No 226
>KOG2730|consensus
Probab=98.37 E-value=3.9e-07 Score=86.63 Aligned_cols=99 Identities=20% Similarity=0.266 Sum_probs=78.7
Q ss_pred cccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEE
Q psy2395 377 LIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFI 456 (570)
Q Consensus 377 ~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~ 456 (570)
.+|.++.+.+...+.... ....|+|..||.|.-++..|..+ ..|++||+||.-+..|+.|++-.|. ..+|+|+
T Consensus 76 vTpe~ia~~iA~~v~~~~--~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI--~~rItFI 148 (263)
T KOG2730|consen 76 VTPEKIAEHIANRVVACM--NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGV--PDRITFI 148 (263)
T ss_pred eccHHHHHHHHHHHHHhc--CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecC--CceeEEE
Confidence 357777777777766543 45689999999999999999776 4799999999999999999997653 3389999
Q ss_pred Eccccccccc---CCCceeEEEECCCCCC
Q psy2395 457 KSNWYNNLQN---YKKLFNIIVANPPYIP 482 (570)
Q Consensus 457 ~~D~~~~l~~---~~~~fD~Iv~NPPy~~ 482 (570)
+||+++.... ....+|+|+..||+.-
T Consensus 149 ~GD~ld~~~~lq~~K~~~~~vf~sppwgg 177 (263)
T KOG2730|consen 149 CGDFLDLASKLKADKIKYDCVFLSPPWGG 177 (263)
T ss_pred echHHHHHHHHhhhhheeeeeecCCCCCC
Confidence 9999774332 2246889999999864
No 227
>KOG1975|consensus
Probab=98.37 E-value=2.1e-06 Score=86.18 Aligned_cols=127 Identities=20% Similarity=0.270 Sum_probs=88.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcc---cCCCCEEEEEcccccc-----ccc
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT---KYNIPIKFIKSNWYNN-----LQN 466 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~---~~~~~v~~~~~D~~~~-----l~~ 466 (570)
.+++..++|+|||-|.-++-.-+.+ -..++|+||..-.++.|++..+.... .+...+.|+.+|.+.. ++.
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred hccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 3567789999999999998887665 36899999999999999987664311 1223588999998653 222
Q ss_pred CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHH
Q psy2395 467 YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFK 546 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~ 546 (570)
.+.+||+|-|-..++- ++ ...+..+.++.++.++|+|||+++-.+|. ...+..-++.
T Consensus 193 ~dp~fDivScQF~~HY-----------------aF----etee~ar~~l~Nva~~LkpGG~FIgTiPd--sd~Ii~rlr~ 249 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHY-----------------AF----ETEESARIALRNVAKCLKPGGVFIGTIPD--SDVIIKRLRA 249 (389)
T ss_pred CCCCcceeeeeeeEee-----------------ee----ccHHHHHHHHHHHHhhcCCCcEEEEecCc--HHHHHHHHHh
Confidence 2344999988543321 11 11234578999999999999999877664 3444444443
No 228
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.37 E-value=3.3e-06 Score=80.58 Aligned_cols=124 Identities=20% Similarity=0.298 Sum_probs=75.9
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN 463 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~ 463 (570)
..+++++.. .++...|.|+|||.+.++..+. ...+|+..|+-.. +-.+..+|+ ..
T Consensus 61 d~iI~~l~~--~~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLva~------------------n~~Vtacdi-a~ 115 (219)
T PF05148_consen 61 DVIIEWLKK--RPKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLVAP------------------NPRVTACDI-AN 115 (219)
T ss_dssp HHHHHHHCT--S-TTS-EEEES-TT-HHHHH------S---EEEEESS-S------------------STTEEES-T-TS
T ss_pred HHHHHHHHh--cCCCEEEEECCCchHHHHHhcc----cCceEEEeeccCC------------------CCCEEEecC-cc
Confidence 455566543 2345799999999999986653 2468999998432 123677898 44
Q ss_pred cccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE-EE--cCCCHHHH
Q psy2395 464 LQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI-EH--GYNQSNLV 540 (570)
Q Consensus 464 l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~-~~--~~~~~~~l 540 (570)
+|..++++|++|+... |-|. .+..++.++.|+|||||.+++ |+ .......+
T Consensus 116 vPL~~~svDv~VfcLS---------------------LMGT-----n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F 169 (219)
T PF05148_consen 116 VPLEDESVDVAVFCLS---------------------LMGT-----NWPDFIREANRVLKPGGILKIAEVKSRFENVKQF 169 (219)
T ss_dssp -S--TT-EEEEEEES------------------------SS------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHH
T ss_pred CcCCCCceeEEEEEhh---------------------hhCC-----CcHHHHHHHHheeccCcEEEEEEecccCcCHHHH
Confidence 5655689999998543 2222 467899999999999999987 55 34677888
Q ss_pred HHHHHHCCCeeEEEEecCCC
Q psy2395 541 RKLLFKYGFSDIKSWRDLSG 560 (570)
Q Consensus 541 ~~ll~~~Gf~~i~~~~D~~g 560 (570)
.+.+...||.... +|..+
T Consensus 170 ~~~~~~~GF~~~~--~d~~n 187 (219)
T PF05148_consen 170 IKALKKLGFKLKS--KDESN 187 (219)
T ss_dssp HHHHHCTTEEEEE--EE--S
T ss_pred HHHHHHCCCeEEe--cccCC
Confidence 8999999998764 45443
No 229
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.35 E-value=3.4e-06 Score=85.83 Aligned_cols=112 Identities=17% Similarity=0.238 Sum_probs=76.1
Q ss_pred CCCEEEEECCcccHHHHH----HHHhcC---CCcEEEEEeCCHHHHHHHHHHHHh--------------hcc-----c--
Q psy2395 397 KKIKLLEMGTGSGAIAIA----IAIYSK---NKIEIIATDISKFALKIAKKNAKK--------------KLT-----K-- 448 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~----la~~~~---~~~~V~gvDis~~al~~A~~n~~~--------------~~~-----~-- 448 (570)
...+||..||+||-=+.. +....+ ...+|+|+|||+.+++.|++.... ... .
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 347999999999964433 333221 146899999999999999976311 000 0
Q ss_pred -------CCCCEEEEEcccccccccCCCceeEEEEC--CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHh
Q psy2395 449 -------YNIPIKFIKSNWYNNLQNYKKLFNIIVAN--PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNAS 519 (570)
Q Consensus 449 -------~~~~v~~~~~D~~~~l~~~~~~fD~Iv~N--PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~ 519 (570)
....|+|.+.|+.+......+.||+|+|. ..|+.. +....+++.+.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~-------------------------~~~~~vl~~l~ 249 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDK-------------------------TTQERILRRFV 249 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCH-------------------------HHHHHHHHHHH
Confidence 11248899999977322224789999993 223211 24578999999
Q ss_pred hccccCeEEEEEEc
Q psy2395 520 KYLVKNGLLLIEHG 533 (570)
Q Consensus 520 ~~LkpgG~l~~~~~ 533 (570)
+.|+|||+|++...
T Consensus 250 ~~L~pgG~L~lG~s 263 (287)
T PRK10611 250 PLLKPDGLLFAGHS 263 (287)
T ss_pred HHhCCCcEEEEeCc
Confidence 99999999887654
No 230
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.33 E-value=2.6e-06 Score=85.55 Aligned_cols=114 Identities=19% Similarity=0.319 Sum_probs=78.3
Q ss_pred CCCEEEEECCcccH----HHHHHHHhcC----CCcEEEEEeCCHHHHHHHHHHHHh---------------hcc--cCC-
Q psy2395 397 KKIKLLEMGTGSGA----IAIAIAIYSK----NKIEIIATDISKFALKIAKKNAKK---------------KLT--KYN- 450 (570)
Q Consensus 397 ~~~~VLDlGcGtG~----i~l~la~~~~----~~~~V~gvDis~~al~~A~~n~~~---------------~~~--~~~- 450 (570)
...+||-+||+||- +++.+...++ ...+|+|+|||..+++.|+.-... ... ..+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 36799999999994 5555555553 258999999999999999853211 000 001
Q ss_pred --------CCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcc
Q psy2395 451 --------IPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYL 522 (570)
Q Consensus 451 --------~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~L 522 (570)
..|.|...|+++..+ ..+.||+|+| .+++-| +. -..-.+++...+..|
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfC-------------RNVLIY------Fd----~~~q~~il~~f~~~L 231 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFC-------------RNVLIY------FD----EETQERILRRFADSL 231 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc-ccCCCCEEEE-------------cceEEe------eC----HHHHHHHHHHHHHHh
Confidence 237888888877554 3578999999 222211 00 124478999999999
Q ss_pred ccCeEEEEEEcC
Q psy2395 523 VKNGLLLIEHGY 534 (570)
Q Consensus 523 kpgG~l~~~~~~ 534 (570)
+|||+|++....
T Consensus 232 ~~gG~LflG~sE 243 (268)
T COG1352 232 KPGGLLFLGHSE 243 (268)
T ss_pred CCCCEEEEccCc
Confidence 999999985543
No 231
>PRK10742 putative methyltransferase; Provisional
Probab=98.32 E-value=2.6e-06 Score=83.96 Aligned_cols=82 Identities=10% Similarity=0.147 Sum_probs=67.3
Q ss_pred EEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcc----cC--CCCEEEEEcccccccccCCCceeE
Q psy2395 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT----KY--NIPIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 400 ~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~----~~--~~~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
+|||+.+|+|..++.++..+ ++|+++|-||.+....+.|+..... .. ..+++++++|..+.+......||+
T Consensus 91 ~VLD~TAGlG~Da~~las~G---~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDV 167 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (250)
T ss_pred EEEECCCCccHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcE
Confidence 89999999999999999764 6799999999999999999886310 01 136899999998877654468999
Q ss_pred EEECCCCCCCC
Q psy2395 474 IVANPPYIPKG 484 (570)
Q Consensus 474 Iv~NPPy~~~~ 484 (570)
|+.+|||-...
T Consensus 168 VYlDPMfp~~~ 178 (250)
T PRK10742 168 VYLDPMFPHKQ 178 (250)
T ss_pred EEECCCCCCCc
Confidence 99999997643
No 232
>KOG3010|consensus
Probab=98.31 E-value=1e-06 Score=85.20 Aligned_cols=98 Identities=29% Similarity=0.323 Sum_probs=67.8
Q ss_pred CEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECC
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANP 478 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NP 478 (570)
..++|+|||+|.-++.+|..+ .+|+|+|+|+.||+.|++...... ......+...+..+.+ ..+++.|+|++--
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y--~~t~~~ms~~~~v~L~-g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTY--CHTPSTMSSDEMVDLL-GGEESVDLITAAQ 108 (261)
T ss_pred ceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCccc--ccCCcccccccccccc-CCCcceeeehhhh
Confidence 389999999998888888765 479999999999999987654210 1112344444443322 2257999999832
Q ss_pred CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEE
Q psy2395 479 PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLL 528 (570)
Q Consensus 479 Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l 528 (570)
.++ +-...++++.++++||+.|-+
T Consensus 109 a~H--------------------------WFdle~fy~~~~rvLRk~Gg~ 132 (261)
T KOG3010|consen 109 AVH--------------------------WFDLERFYKEAYRVLRKDGGL 132 (261)
T ss_pred hHH--------------------------hhchHHHHHHHHHHcCCCCCE
Confidence 221 113478999999999988733
No 233
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.31 E-value=3.4e-06 Score=81.18 Aligned_cols=125 Identities=20% Similarity=0.312 Sum_probs=71.5
Q ss_pred HHHHHHHHhh-c----CCCCCEEEEECCcccHHHHHH----HHhc----CCCcEEEEEeCCHHHHHHHHHHHH-------
Q psy2395 384 ELLVDLIVKK-T----FEKKIKLLEMGTGSGAIAIAI----AIYS----KNKIEIIATDISKFALKIAKKNAK------- 443 (570)
Q Consensus 384 ~~l~~~~~~~-~----~~~~~~VLDlGcGtG~i~l~l----a~~~----~~~~~V~gvDis~~al~~A~~n~~------- 443 (570)
+.+.+.++.. + ..++.+||..||+||-=+..+ .... +...+|+|+|||+.+++.|++-.-
T Consensus 13 ~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~ 92 (196)
T PF01739_consen 13 EALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRG 92 (196)
T ss_dssp HHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTT
T ss_pred HHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhh
Confidence 4555555532 1 125679999999999654333 3311 114799999999999999985321
Q ss_pred -------hhc-ccC----------CCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCcc-cccccccccc
Q psy2395 444 -------KKL-TKY----------NIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLR-FEPINALTDY 504 (570)
Q Consensus 444 -------~~~-~~~----------~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~-~ep~~al~~~ 504 (570)
+.. ... ...|.|.+.|+.+ .....+.||+|+|. +++- |.+
T Consensus 93 ~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CR-------------NVlIYF~~------- 151 (196)
T PF01739_consen 93 LPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCR-------------NVLIYFDP------- 151 (196)
T ss_dssp S-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE--------------SSGGGS-H-------
T ss_pred hHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEec-------------CEEEEeCH-------
Confidence 111 000 1258999999988 22234789999992 2221 111
Q ss_pred CCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 505 SNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 505 ~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
+....+++.+.+.|+|||+|++...
T Consensus 152 ----~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 152 ----ETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp ----HHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred ----HHHHHHHHHHHHHcCCCCEEEEecC
Confidence 3457899999999999999998543
No 234
>KOG1500|consensus
Probab=98.28 E-value=3.8e-06 Score=84.35 Aligned_cols=121 Identities=19% Similarity=0.280 Sum_probs=83.2
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
.+..|||+|||+|.++...|..+ ..+|++||.| +|.+.|++.+..| ....++.++.|-+.+. . .+++.|+||+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS-~MAqyA~~Lv~~N--~~~~rItVI~GKiEdi-e-LPEk~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEAS-EMAQYARKLVASN--NLADRITVIPGKIEDI-E-LPEKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC--cceEEEEehh-HHHHHHHHHHhcC--CccceEEEccCccccc-c-CchhccEEEe
Confidence 46789999999999999999887 4799999986 6789999988765 2456899999998653 2 2378999999
Q ss_pred CCC-CCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc------CCCHHHHHHHHHHCC
Q psy2395 477 NPP-YIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG------YNQSNLVRKLLFKYG 548 (570)
Q Consensus 477 NPP-y~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~------~~~~~~l~~ll~~~G 548 (570)
.|- |.-.. +. .++. .-.+.++|+|+|.++=.+| +.......+.+.++.
T Consensus 250 EPMG~mL~N--------------------ER---MLEs-Yl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAn 304 (517)
T KOG1500|consen 250 EPMGYMLVN--------------------ER---MLES-YLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKAN 304 (517)
T ss_pred ccchhhhhh--------------------HH---HHHH-HHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhh
Confidence 763 21100 00 1122 2235689999999875443 333444455555444
No 235
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.28 E-value=8.9e-06 Score=89.69 Aligned_cols=135 Identities=20% Similarity=0.109 Sum_probs=93.7
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc-cCCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ-NYKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fD~Iv 475 (570)
.+..+||||||.|.+.+.+|...| ...++|+|++...+..|.+.+...+ -.++.++++|+..... .+++++|.|+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~---l~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQN---ITNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcC---CCeEEEEcCCHHHHHHhcCcccccEEE
Confidence 456899999999999999999987 6899999999999988887776532 2358888888732221 2237899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC-HHHHHHHHHHCC-CeeE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ-SNLVRKLLFKYG-FSDI 552 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~l~~ll~~~G-f~~i 552 (570)
.|-| .+++. .+|.-+ .+ ....+++...+.|+|||.+.+.+.... .......+.+.+ |..+
T Consensus 423 i~FP---DPWpK-----krh~kr-Rl--------~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~~~ 484 (506)
T PRK01544 423 ILFP---DPWIK-----NKQKKK-RI--------FNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFEII 484 (506)
T ss_pred EECC---CCCCC-----CCCccc-cc--------cCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeEec
Confidence 9854 22111 011100 11 226788899999999999998765433 444566666665 6654
No 236
>PRK00536 speE spermidine synthase; Provisional
Probab=98.26 E-value=2.1e-05 Score=78.91 Aligned_cols=154 Identities=12% Similarity=0.034 Sum_probs=98.9
Q ss_pred ccccCeeeeecCCccccchh----HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHH
Q psy2395 363 KEFYGLVLNITSDVLIPRPE----TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIA 438 (570)
Q Consensus 363 ~~f~~~~~~v~~~~~~pr~~----t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A 438 (570)
...+|.-+.++ ++.....+ .|.|+.-.+-. -+.+.+||=+|.|-|..+..+++. + .+|+.||||+..++.+
T Consensus 36 s~~fGr~LvLD-~~~~te~dEfiYHEmLvHppl~~-h~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~ 110 (262)
T PRK00536 36 SKDFGEIAMLN-KQLLFKNFLHIESELLAHMGGCT-KKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSF 110 (262)
T ss_pred ccccccEEEEe-eeeeecchhhhHHHHHHHHHHhh-CCCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHH
Confidence 34557777777 55532221 23333333321 256789999999999999999976 3 3999999999999999
Q ss_pred HHHHHhhccc-CCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHH
Q psy2395 439 KKNAKKKLTK-YNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKN 517 (570)
Q Consensus 439 ~~n~~~~~~~-~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~ 517 (570)
++.+...... .+.+++++.. + .....++||+||.+..|- ..+++.
T Consensus 111 k~~lP~~~~~~~DpRv~l~~~-~---~~~~~~~fDVIIvDs~~~------------------------------~~fy~~ 156 (262)
T PRK00536 111 ISFFPHFHEVKNNKNFTHAKQ-L---LDLDIKKYDLIICLQEPD------------------------------IHKIDG 156 (262)
T ss_pred HHHCHHHHHhhcCCCEEEeeh-h---hhccCCcCCEEEEcCCCC------------------------------hHHHHH
Confidence 9965543211 3446777752 2 111126899999974321 355677
Q ss_pred HhhccccCeEEEEEE--cCCCHHHHHHHHHH--CCCeeEEEE
Q psy2395 518 ASKYLVKNGLLLIEH--GYNQSNLVRKLLFK--YGFSDIKSW 555 (570)
Q Consensus 518 ~~~~LkpgG~l~~~~--~~~~~~~l~~ll~~--~Gf~~i~~~ 555 (570)
+.+.|+|||.++... +..+.+.+..+.+. ..|..+..+
T Consensus 157 ~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y 198 (262)
T PRK00536 157 LKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPF 198 (262)
T ss_pred HHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEEE
Confidence 888999999999844 33444444444332 268766544
No 237
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.25 E-value=2e-05 Score=76.51 Aligned_cols=122 Identities=16% Similarity=0.236 Sum_probs=92.7
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCC-CEEEEEcccccccccCCCc-eeEEE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNI-PIKFIKSNWYNNLQNYKKL-FNIIV 475 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~-~v~~~~~D~~~~l~~~~~~-fD~Iv 475 (570)
+.+++|||+|.|.-++.+|-..| ..+|+-+|....-+...+.-.... +. +++++++.+.+.... .. ||+|.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL----~L~nv~i~~~RaE~~~~~--~~~~D~vt 140 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKEL----GLENVEIVHGRAEEFGQE--KKQYDVVT 140 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHh----CCCCeEEehhhHhhcccc--cccCcEEE
Confidence 58999999999999999997776 578999999999888888877763 44 499999999664432 23 99999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE---EcCCCHHHHHHHHHHCCCeeE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE---HGYNQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~---~~~~~~~~l~~ll~~~Gf~~i 552 (570)
+- | +..+..+++-+..++++||.+++. -+.+...+....+...|+...
T Consensus 141 sR----------------------A-------va~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~ 191 (215)
T COG0357 141 SR----------------------A-------VASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVE 191 (215)
T ss_pred ee----------------------h-------ccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEE
Confidence 91 1 224567888888999999987543 344556667777777787776
Q ss_pred EEE
Q psy2395 553 KSW 555 (570)
Q Consensus 553 ~~~ 555 (570)
.+.
T Consensus 192 ~~~ 194 (215)
T COG0357 192 KVF 194 (215)
T ss_pred EEE
Confidence 544
No 238
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.25 E-value=1e-05 Score=79.72 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=34.4
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHH
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKI 437 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~ 437 (570)
++.+|||+|||||.++..+++.+ ..+|+|+|+++.++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHH
Confidence 56799999999999999999875 4689999999988865
No 239
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.20 E-value=6.6e-06 Score=78.27 Aligned_cols=142 Identities=16% Similarity=0.198 Sum_probs=85.9
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc---------ccC
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL---------QNY 467 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l---------~~~ 467 (570)
++.+|||+||++|.++..+++......+|+|+|+.+. . ....+.++++|+.+.. ...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~-----~~~~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------D-----PLQNVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------G-----S-TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------c-----cccceeeeecccchhhHHHhhhhhcccc
Confidence 4589999999999999999987633589999999887 1 1123666677765421 111
Q ss_pred CCceeEEEECC-CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-cCCCHHHHHHHHH
Q psy2395 468 KKLFNIIVANP-PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-GYNQSNLVRKLLF 545 (570)
Q Consensus 468 ~~~fD~Iv~NP-Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~l~~ll~ 545 (570)
..+||+|++|- |..... ... + ...........+..+..+|+|||.+++-+ .......+...++
T Consensus 89 ~~~~dlv~~D~~~~~~g~-~~~-------d-------~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~ 153 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGD-RNI-------D-------EFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLK 153 (181)
T ss_dssp TCSESEEEE-------SS-HHS-------S-------HHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHH
T ss_pred ccCcceeccccccCCCCc-hhh-------H-------HHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHH
Confidence 25899999984 221111 000 0 00112344555666778899999888744 3222246777666
Q ss_pred HCCCeeEEEEecCC----CCceEEEEE
Q psy2395 546 KYGFSDIKSWRDLS----GIERVTQGK 568 (570)
Q Consensus 546 ~~Gf~~i~~~~D~~----g~~R~~~~~ 568 (570)
. .|..+.+++... +.+++++++
T Consensus 154 ~-~F~~v~~~Kp~~sr~~s~E~Ylv~~ 179 (181)
T PF01728_consen 154 R-CFSKVKIVKPPSSRSESSEEYLVCR 179 (181)
T ss_dssp H-HHHHEEEEE-TTSBTTCBEEEEESE
T ss_pred h-CCeEEEEEECcCCCCCccEEEEEEc
Confidence 5 688888887553 555666653
No 240
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.20 E-value=1.3e-05 Score=73.27 Aligned_cols=107 Identities=18% Similarity=0.234 Sum_probs=80.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc----ccCCCce
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL----QNYKKLF 471 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l----~~~~~~f 471 (570)
..+.-||++|.|||.++-++..++-....++++|.|++.+....+... .+.++.||+++.. ......|
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p--------~~~ii~gda~~l~~~l~e~~gq~~ 118 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP--------GVNIINGDAFDLRTTLGEHKGQFF 118 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC--------CccccccchhhHHHHHhhcCCCee
Confidence 567799999999999999998877556789999999999988776543 2669999987633 1223579
Q ss_pred eEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE-EEc
Q psy2395 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI-EHG 533 (570)
Q Consensus 472 D~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~-~~~ 533 (570)
|.|||--|+...+ +..--++++.+...|..||-++- ..+
T Consensus 119 D~viS~lPll~~P-----------------------~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 119 DSVISGLPLLNFP-----------------------MHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eeEEeccccccCc-----------------------HHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 9999988765322 11225788888889999998764 344
No 241
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.19 E-value=2.3e-05 Score=75.57 Aligned_cols=129 Identities=15% Similarity=0.117 Sum_probs=85.5
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEEC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVAN 477 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~N 477 (570)
..+.||.|||.|.++-.+.... ..+|..||.++..++.|++.+... ...-.++++.-+.+..|. ..+||+|++.
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~---~~~v~~~~~~gLQ~f~P~-~~~YDlIW~Q 129 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKD---NPRVGEFYCVGLQDFTPE-EGKYDLIWIQ 129 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCG---GCCEEEEEES-GGG-----TT-EEEEEEE
T ss_pred cceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhccc---CCCcceEEecCHhhccCC-CCcEeEEEeh
Confidence 4689999999999998765433 358999999999999999876531 122367787777554443 4699999993
Q ss_pred CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE---EEcCC-------------CHHHHH
Q psy2395 478 PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI---EHGYN-------------QSNLVR 541 (570)
Q Consensus 478 PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~---~~~~~-------------~~~~l~ 541 (570)
= . .++ =--+.+-.+++.+...|+|+|++++ ....+ ..+.++
T Consensus 130 W---------------------~-lgh-LTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~ 186 (218)
T PF05891_consen 130 W---------------------C-LGH-LTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFR 186 (218)
T ss_dssp S-----------------------GGG-S-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHH
T ss_pred H---------------------h-hcc-CCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHH
Confidence 0 0 000 0113567899999999999999987 11111 247889
Q ss_pred HHHHHCCCeeEEEE
Q psy2395 542 KLLFKYGFSDIKSW 555 (570)
Q Consensus 542 ~ll~~~Gf~~i~~~ 555 (570)
++++++|+..+...
T Consensus 187 ~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 187 ELFKQAGLRLVKEE 200 (218)
T ss_dssp HHHHHCT-EEEEEE
T ss_pred HHHHHcCCEEEEec
Confidence 99999999988644
No 242
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.18 E-value=2.7e-05 Score=74.75 Aligned_cols=125 Identities=16% Similarity=0.172 Sum_probs=100.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
+.+.+++|+||--|+++..|.+..+ ...++++|+++..++.|.+|+.+++ +..++++.++|.+..+.. +..+|+|+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~--l~~~i~vr~~dgl~~l~~-~d~~d~iv 90 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNN--LSERIDVRLGDGLAVLEL-EDEIDVIV 90 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcC--CcceEEEeccCCccccCc-cCCcCEEE
Confidence 3455699999999999999998875 6899999999999999999999863 455799999999776654 34788888
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i 552 (570)
. .|- |-..+..++++....|+.--.+++ -|..+...+++++..++|..+
T Consensus 91 I--------------------------AGM-GG~lI~~ILee~~~~l~~~~rlIL-QPn~~~~~LR~~L~~~~~~I~ 139 (226)
T COG2384 91 I--------------------------AGM-GGTLIREILEEGKEKLKGVERLIL-QPNIHTYELREWLSANSYEIK 139 (226)
T ss_pred E--------------------------eCC-cHHHHHHHHHHhhhhhcCcceEEE-CCCCCHHHHHHHHHhCCceee
Confidence 7 121 224788999999988876544443 578899999999999999865
No 243
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=3e-05 Score=74.31 Aligned_cols=140 Identities=14% Similarity=0.157 Sum_probs=93.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc------cC-
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ------NY- 467 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~------~~- 467 (570)
..++.+|+||||-.|..+..+++....+..|+|+|+.|-. .-..|.++++|++.... ..
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~--------------~~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK--------------PIPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc--------------cCCCceEEeeeccCccHHHHHHHHcC
Confidence 4678999999999999999999887656679999998753 22348999999976321 11
Q ss_pred CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE-EEcCCCHHHHHHHHHH
Q psy2395 468 KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI-EHGYNQSNLVRKLLFK 546 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~l~~ll~~ 546 (570)
..++|+|+|++-=-..... .+ .+..-+..-...+..+..+|+|||.+++ .+-....+.+...+++
T Consensus 109 ~~~~DvV~sD~ap~~~g~~-----~~---------Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~ 174 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNR-----SV---------DHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRR 174 (205)
T ss_pred CCCcceEEecCCCCcCCCc-----cc---------cHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHH
Confidence 1357999997421000000 00 0001123345677778889999999987 4444555666666655
Q ss_pred CCCeeEEEEecCCCCce
Q psy2395 547 YGFSDIKSWRDLSGIER 563 (570)
Q Consensus 547 ~Gf~~i~~~~D~~g~~R 563 (570)
.|..+++.+-.+.+.+
T Consensus 175 -~F~~v~~~KP~aSR~~ 190 (205)
T COG0293 175 -LFRKVKIFKPKASRKR 190 (205)
T ss_pred -hhceeEEecCccccCC
Confidence 5888888887666543
No 244
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.11 E-value=0.00024 Score=68.70 Aligned_cols=142 Identities=18% Similarity=0.157 Sum_probs=94.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC--CCceeE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY--KKLFNI 473 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fD~ 473 (570)
.++.+||-+|+.+|.....++.-..+...|+|||.||......-.-++. ..|+-.+.+|+..+.... -+.+|+
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-----R~NIiPIl~DAr~P~~Y~~lv~~VDv 146 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-----RPNIIPILEDARHPEKYRMLVEMVDV 146 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-----STTEEEEES-TTSGGGGTTTS--EEE
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-----CCceeeeeccCCChHHhhcccccccE
Confidence 5788999999999999988887765568999999999776655544443 346888999997654332 268999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC------CCH----HHHHHH
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY------NQS----NLVRKL 543 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~------~~~----~~l~~l 543 (570)
|++|-.- | +-.+-++.++..+||+||.+++.+.. ... ....+.
T Consensus 147 I~~DVaQ----------------p-----------~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~ 199 (229)
T PF01269_consen 147 IFQDVAQ----------------P-----------DQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKK 199 (229)
T ss_dssp EEEE-SS----------------T-----------THHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHH
T ss_pred EEecCCC----------------h-----------HHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHH
Confidence 9996321 0 13366778888999999999886632 122 234556
Q ss_pred HHHCCCeeEEEEe--cCCCCceEEEEEe
Q psy2395 544 LFKYGFSDIKSWR--DLSGIERVTQGKI 569 (570)
Q Consensus 544 l~~~Gf~~i~~~~--D~~g~~R~~~~~~ 569 (570)
|++.||..++... .+...--+++|++
T Consensus 200 L~~~~~~~~e~i~LePy~~dH~~vv~~y 227 (229)
T PF01269_consen 200 LKEEGFKPLEQITLEPYERDHAMVVGRY 227 (229)
T ss_dssp HHCTTCEEEEEEE-TTTSTTEEEEEEEE
T ss_pred HHHcCCChheEeccCCCCCCcEEEEEEe
Confidence 7777999876553 2222234566654
No 245
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.08 E-value=6.8e-05 Score=76.49 Aligned_cols=181 Identities=12% Similarity=0.149 Sum_probs=115.5
Q ss_pred cCeeeeecCCccccchhHHHHHHHHHh-hc--CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHH
Q psy2395 366 YGLVLNITSDVLIPRPETELLVDLIVK-KT--FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNA 442 (570)
Q Consensus 366 ~~~~~~v~~~~~~pr~~t~~l~~~~~~-~~--~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~ 442 (570)
.+++++.+.+......+.....+.++- .. .+...+||-+|-|-|--+..+.+. |+-.+|+-||++|.|++.+++|.
T Consensus 255 ~d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~ 333 (508)
T COG4262 255 DDLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHAT 333 (508)
T ss_pred CceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhh
Confidence 456777776655444333333333221 11 134568999999999888888755 55679999999999999999664
Q ss_pred Hh---hccc-CCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHH
Q psy2395 443 KK---KLTK-YNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNA 518 (570)
Q Consensus 443 ~~---~~~~-~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~ 518 (570)
-. |... .+.+++++..|+++.+....+.||+||.+.|=-..+. .+.- .-.+|...+
T Consensus 334 vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps----------------~~rl----YS~eFY~ll 393 (508)
T COG4262 334 VLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPS----------------IGRL----YSVEFYRLL 393 (508)
T ss_pred HhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcc----------------hhhh----hhHHHHHHH
Confidence 22 2111 2347999999999988766679999999865221111 1110 113566667
Q ss_pred hhccccCeEEEEEEcCC--CH---HHHHHHHHHCCCeeEE--EEecCCCCceEEEE
Q psy2395 519 SKYLVKNGLLLIEHGYN--QS---NLVRKLLFKYGFSDIK--SWRDLSGIERVTQG 567 (570)
Q Consensus 519 ~~~LkpgG~l~~~~~~~--~~---~~l~~ll~~~Gf~~i~--~~~D~~g~~R~~~~ 567 (570)
.+.|+++|.+++..+.. .. -.+..-++++||...- ++-.-.|..-+++|
T Consensus 394 ~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~ 449 (508)
T COG4262 394 SRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEWGFILA 449 (508)
T ss_pred HHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEecCcccccceeec
Confidence 78999999999866542 22 2356678899987643 23333555555554
No 246
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.06 E-value=4.4e-05 Score=75.38 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=77.8
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
...++||||+|.|.++..++..+ .+|+++|+|+.|....++. + .+++..|- +...+.+||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~k--------g--~~vl~~~~---w~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSKK--------G--FTVLDIDD---WQQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHhC--------C--CeEEehhh---hhccCCceEEEee
Confidence 45689999999999999999776 4799999999996544321 1 23332221 2222368999998
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE--E--------cC--CC--------
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE--H--------GY--NQ-------- 536 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~--~--------~~--~~-------- 536 (570)
- ++ |+. .+....+++.+++.|+|+|++++. . +. .+
T Consensus 158 L-------------Nv--------LDR----c~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~ 212 (265)
T PF05219_consen 158 L-------------NV--------LDR----CDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPV 212 (265)
T ss_pred h-------------hh--------hhc----cCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCC
Confidence 1 11 111 122367888999999999998762 2 22 11
Q ss_pred --------HHHHHHHHHHCCCeeEEEE
Q psy2395 537 --------SNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 537 --------~~~l~~ll~~~Gf~~i~~~ 555 (570)
...+.+.++.+||+.....
T Consensus 213 ~g~~~E~~v~~l~~v~~p~GF~v~~~t 239 (265)
T PF05219_consen 213 KGATFEEQVSSLVNVFEPAGFEVERWT 239 (265)
T ss_pred CCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 2334477888999976543
No 247
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.01 E-value=2.6e-05 Score=78.85 Aligned_cols=78 Identities=23% Similarity=0.259 Sum_probs=63.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC--CCceeE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY--KKLFNI 473 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fD~ 473 (570)
.++..|||+|+|+|.++..|+..+ .+++++|+++.+++..++... ...+++++.+|+++..... ......
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~-----~~~~~~vi~~D~l~~~~~~~~~~~~~~ 100 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA-----SNPNVEVINGDFLKWDLYDLLKNQPLL 100 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT-----TCSSEEEEES-TTTSCGGGHCSSSEEE
T ss_pred CCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh-----hcccceeeecchhccccHHhhcCCceE
Confidence 467899999999999999999876 589999999999999988765 2557999999998743321 246789
Q ss_pred EEECCCCC
Q psy2395 474 IVANPPYI 481 (570)
Q Consensus 474 Iv~NPPy~ 481 (570)
|++|.||.
T Consensus 101 vv~NlPy~ 108 (262)
T PF00398_consen 101 VVGNLPYN 108 (262)
T ss_dssp EEEEETGT
T ss_pred EEEEeccc
Confidence 99999985
No 248
>KOG3045|consensus
Probab=98.01 E-value=5.4e-05 Score=73.95 Aligned_cols=106 Identities=21% Similarity=0.325 Sum_probs=78.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
+....|.|+|||-+-++.. . ..+|+..|+- ..+-.++.+|+.+ +|..+++.|++|
T Consensus 179 ~~~~vIaD~GCGEakiA~~---~---~~kV~SfDL~------------------a~~~~V~~cDm~~-vPl~d~svDvaV 233 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIASS---E---RHKVHSFDLV------------------AVNERVIACDMRN-VPLEDESVDVAV 233 (325)
T ss_pred cCceEEEecccchhhhhhc---c---ccceeeeeee------------------cCCCceeeccccC-CcCccCcccEEE
Confidence 4567899999999988761 1 2479999973 1224578889866 666678999999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE-EE--cCCCHHHHHHHHHHCCCeeE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI-EH--GYNQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~-~~--~~~~~~~l~~ll~~~Gf~~i 552 (570)
+..... | ..+..|+.++.++|++||.+++ ++ .+.....+.+.+...||...
T Consensus 234 ~CLSLM---------------------g-----tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~ 287 (325)
T KOG3045|consen 234 FCLSLM---------------------G-----TNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVK 287 (325)
T ss_pred eeHhhh---------------------c-----ccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeee
Confidence 854322 2 2467899999999999999988 44 34566778888999999864
No 249
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.98 E-value=0.0001 Score=66.48 Aligned_cols=111 Identities=18% Similarity=0.227 Sum_probs=72.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCC-ceeEEEECCCCCCCCCcccCCCCcccccccccc
Q psy2395 424 EIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKK-LFNIIVANPPYIPKGDIHLNKGDLRFEPINALT 502 (570)
Q Consensus 424 ~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~-~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~ 502 (570)
+|+|+||.++|++.+++.+...+ ...+++++..+=.......+. ++|+++.|.-|.|..+......
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~--~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~----------- 67 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG--LEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTK----------- 67 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT---GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB-------------
T ss_pred CEEEEECHHHHHHHHHHHHHhcC--CCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcC-----------
Confidence 59999999999999999998753 233799998876443333334 8999999999998765422111
Q ss_pred ccCCChHHHHHHHHHHhhccccCeEEEEEE--cCCC----HHHHHHHHHHC---CCeeE
Q psy2395 503 DYSNGLSSIKEIVKNASKYLVKNGLLLIEH--GYNQ----SNLVRKLLFKY---GFSDI 552 (570)
Q Consensus 503 ~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~--~~~~----~~~l~~ll~~~---Gf~~i 552 (570)
.+.--..++.+.+.|+|||.+.+.+ |... .+.+.+++... .|.++
T Consensus 68 -----~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~ 121 (140)
T PF06962_consen 68 -----PETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVL 121 (140)
T ss_dssp -----HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEE
T ss_pred -----cHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEE
Confidence 1234567888888999999998755 3332 34566666653 46654
No 250
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.83 E-value=3.5e-05 Score=72.47 Aligned_cols=103 Identities=20% Similarity=0.390 Sum_probs=77.7
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
.+++|||+|+|+|..++..++.+ ...|++.|++|.....++.|+..| +..+.+...|..- . +..||+|+.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~an----gv~i~~~~~d~~g--~--~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAAN----GVSILFTHADLIG--S--PPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhc----cceeEEeeccccC--C--CcceeEEEe
Confidence 57899999999999999999887 478999999999999999999974 6678999999854 2 367999998
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN 535 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~ 535 (570)
.--| |++ ....+++. ....|+..|..+++..+.
T Consensus 149 gDlf--------------y~~-----------~~a~~l~~-~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 149 GDLF--------------YNH-----------TEADRLIP-WKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred ecee--------------cCc-----------hHHHHHHH-HHHHHHhCCCEEEEeCCC
Confidence 3222 211 23356666 666777777766654443
No 251
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.82 E-value=3.7e-05 Score=71.59 Aligned_cols=70 Identities=13% Similarity=0.213 Sum_probs=58.3
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
.+.+.|+|+|||.++...|+.. -+|++++.+|.-...|++|+..+ ...+++++.+|+.+.. . ...|+|+|
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~---g~~n~evv~gDA~~y~-f--e~ADvvic 102 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVP---GDVNWEVVVGDARDYD-F--ENADVVIC 102 (252)
T ss_pred hhceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCC---CCcceEEEeccccccc-c--cccceeHH
Confidence 3689999999999999988764 58999999999999999998653 3447999999996532 2 56899998
No 252
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.81 E-value=0.00045 Score=69.50 Aligned_cols=131 Identities=20% Similarity=0.257 Sum_probs=86.6
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhc------------------------------
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKL------------------------------ 446 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~------------------------------ 446 (570)
.+.+||-.|||.|.++..+|..+ ..+.|.|.|--|+-...--+....
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G---~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLG---YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhcc---ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 45799999999999999999774 689999999999755543221000
Q ss_pred -------ccCCCCEEEEEcccccccccC--CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHH
Q psy2395 447 -------TKYNIPIKFIKSNWYNNLQNY--KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKN 517 (570)
Q Consensus 447 -------~~~~~~v~~~~~D~~~~l~~~--~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~ 517 (570)
.....++....||+.+..... .++||+|++. |+- |-...+-+.++.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~--FFI-----------------------DTA~Ni~~Yi~t 187 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC--FFI-----------------------DTAENIIEYIET 187 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE--EEe-----------------------echHHHHHHHHH
Confidence 000113455566665543332 2567777764 221 122356788899
Q ss_pred HhhccccCeEEEEEEcC------C-----------CHHHHHHHHHHCCCeeEEEEe
Q psy2395 518 ASKYLVKNGLLLIEHGY------N-----------QSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 518 ~~~~LkpgG~l~~~~~~------~-----------~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
+.++||||| +++-+|+ . ..+++..++...||.++....
T Consensus 188 I~~lLkpgG-~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 188 IEHLLKPGG-YWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred HHHHhccCC-EEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 999999999 5554433 1 247899999999999875443
No 253
>KOG2940|consensus
Probab=97.80 E-value=4.1e-05 Score=73.40 Aligned_cols=88 Identities=14% Similarity=0.123 Sum_probs=63.1
Q ss_pred HHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc
Q psy2395 385 LLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL 464 (570)
Q Consensus 385 ~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l 464 (570)
.+.+.+... .+....++|||||-|++...+..++ -.+++-+|.|-.|++.++.--. .+..+..+.+|- +.+
T Consensus 61 rlaDrvfD~-kk~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qd-----p~i~~~~~v~DE-E~L 131 (325)
T KOG2940|consen 61 RLADRVFDC-KKSFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQD-----PSIETSYFVGDE-EFL 131 (325)
T ss_pred HHHHHHHHH-hhhCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCC-----CceEEEEEecch-hcc
Confidence 344444332 2334589999999999999988765 4689999999999998875422 344577788885 556
Q ss_pred ccCCCceeEEEECCCCC
Q psy2395 465 QNYKKLFNIIVANPPYI 481 (570)
Q Consensus 465 ~~~~~~fD~Iv~NPPy~ 481 (570)
+..+.+||+|++....+
T Consensus 132 df~ens~DLiisSlslH 148 (325)
T KOG2940|consen 132 DFKENSVDLIISSLSLH 148 (325)
T ss_pred cccccchhhhhhhhhhh
Confidence 66568999999965433
No 254
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=97.78 E-value=0.00022 Score=78.81 Aligned_cols=154 Identities=14% Similarity=0.144 Sum_probs=90.9
Q ss_pred CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhc---CCCcEEEEEeCCHHHHHHHHHHHHhhcccCC
Q psy2395 374 SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYS---KNKIEIIATDISKFALKIAKKNAKKKLTKYN 450 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~---~~~~~V~gvDis~~al~~A~~n~~~~~~~~~ 450 (570)
..+++|+.....+++.+.. ...+...|.|++||||.+.+...+.. .....++|.++.+.+...|+.|+..++. .+
T Consensus 195 g~~~Tp~~Iv~l~~~~~~~-~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~-~~ 272 (501)
T TIGR00497 195 GEFFTPQDISELLARIAIG-KKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI-DY 272 (501)
T ss_pred ceeeCcHHHHHHHHHHhcc-CCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC-Cc
Confidence 4467788888877765432 12345689999999999987655432 1125699999999999999999765431 11
Q ss_pred CCEEEEEccccccccc-CCCceeEEEECCCCCCCCCcccCCCCccccccccccc-----cCCChHHHHHHHHHHhhcccc
Q psy2395 451 IPIKFIKSNWYNNLQN-YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTD-----YSNGLSSIKEIVKNASKYLVK 524 (570)
Q Consensus 451 ~~v~~~~~D~~~~l~~-~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~-----~~~gl~~~~~~l~~~~~~Lkp 524 (570)
.......+|-+..... ...+||+|++||||...-.....++.. ..+.....+ ...| ..++..+...|++
T Consensus 273 ~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~-~~d~~~~~~~l~~~~~~~----~afi~h~~~~L~~ 347 (501)
T TIGR00497 273 ANFNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLV-SDVRFKDAGTLAPNSKAD----LAFVLHALYVLGQ 347 (501)
T ss_pred cccCcccCCcCCCccccccccCCEEeecCCcccccccccccccc-cccchhcccCCCCCchhh----HHHHHHHHHhcCC
Confidence 2233444554432111 125799999999996421111111110 001100011 1223 3556666678999
Q ss_pred CeEEEEEEcC
Q psy2395 525 NGLLLIEHGY 534 (570)
Q Consensus 525 gG~l~~~~~~ 534 (570)
||...++.+.
T Consensus 348 gG~~aiI~~~ 357 (501)
T TIGR00497 348 EGTAAIVCFP 357 (501)
T ss_pred CCeEEEEecC
Confidence 9998776543
No 255
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.75 E-value=3.3e-05 Score=66.61 Aligned_cols=100 Identities=19% Similarity=0.194 Sum_probs=43.7
Q ss_pred EEECCcccHHHHHHHHhcCCCc--EEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCC-CceeEEEECC
Q psy2395 402 LEMGTGSGAIAIAIAIYSKNKI--EIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYK-KLFNIIVANP 478 (570)
Q Consensus 402 LDlGcGtG~i~l~la~~~~~~~--~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~-~~fD~Iv~NP 478 (570)
||+||..|..++.+++..++.. +++++|..+. .+.++++++.. ....+++++.+|..+.++... ++||+|+.+-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~--~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA--GLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS-------------G--GG-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc--CCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 6899999999998887654433 7999999996 33334444322 134469999999977655443 7899999964
Q ss_pred CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 479 PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 479 Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
+. -......-++.+.+.|+|||.+++
T Consensus 78 ~H--------------------------~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 78 DH--------------------------SYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp -----------------------------HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CC--------------------------CHHHHHHHHHHHHHHcCCCeEEEE
Confidence 21 113456778888999999998876
No 256
>KOG1122|consensus
Probab=97.70 E-value=0.00048 Score=71.92 Aligned_cols=163 Identities=17% Similarity=0.149 Sum_probs=103.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc-ccCCCceeE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL-QNYKKLFNI 473 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l-~~~~~~fD~ 473 (570)
+.++.+|||+|+-.|.=+..+|........|+|.|.+..-+...+.|+.+.|. .+..+...|..+.. ....++||-
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv---~ntiv~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV---TNTIVSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC---CceEEEccCcccccccccCcccce
Confidence 45789999999999998888887666678999999999999999999998531 13555666664321 122348999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc----CCCHHHHHHHHHHC-C
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG----YNQSNLVRKLLFKY-G 548 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~----~~~~~~l~~ll~~~-G 548 (570)
|+.+.|-.-..-....+.+...+-...+. .-...-++++..+..++++||+|++.+. ..+...+.-+|++. .
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~---~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~ 392 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDIL---RYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRPE 392 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHH---HhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCCc
Confidence 99998865422221111111100000000 0012446899999999999999988543 24444455556665 4
Q ss_pred CeeEEEEecCCCCce
Q psy2395 549 FSDIKSWRDLSGIER 563 (570)
Q Consensus 549 f~~i~~~~D~~g~~R 563 (570)
++.+....++.+--|
T Consensus 393 ~kL~p~~~~iG~~G~ 407 (460)
T KOG1122|consen 393 VKLVPTGLDIGGEGR 407 (460)
T ss_pred eEeccccccCCCCCc
Confidence 555555555544443
No 257
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.63 E-value=0.00044 Score=67.12 Aligned_cols=83 Identities=11% Similarity=0.147 Sum_probs=51.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhc-----c-cCCCCEEEEEcccccccc--c
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKL-----T-KYNIPIKFIKSNWYNNLQ--N 466 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~-----~-~~~~~v~~~~~D~~~~l~--~ 466 (570)
..++..++|||||.|...+.+|...+ ..+.+|||+.+...+.|+.+..... . ....++.+..+|+.+... .
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~ 118 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKD 118 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhh
Confidence 35678999999999999988887764 4569999999999998886554321 0 112368899999876421 1
Q ss_pred CCCceeEEEECC
Q psy2395 467 YKKLFNIIVANP 478 (570)
Q Consensus 467 ~~~~fD~Iv~NP 478 (570)
.-...|+|++|-
T Consensus 119 ~~s~AdvVf~Nn 130 (205)
T PF08123_consen 119 IWSDADVVFVNN 130 (205)
T ss_dssp HGHC-SEEEE--
T ss_pred hhcCCCEEEEec
Confidence 013579999973
No 258
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.62 E-value=0.0014 Score=67.92 Aligned_cols=136 Identities=13% Similarity=0.099 Sum_probs=84.3
Q ss_pred CCccccchhHHHHHHHHHhh--cCCCCCEEEEECCcccHHHHHHHHhcC---CCcEEEEEeCCHHHHHHHHHHHH-hhcc
Q psy2395 374 SDVLIPRPETELLVDLIVKK--TFEKKIKLLEMGTGSGAIAIAIAIYSK---NKIEIIATDISKFALKIAKKNAK-KKLT 447 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~--~~~~~~~VLDlGcGtG~i~l~la~~~~---~~~~V~gvDis~~al~~A~~n~~-~~~~ 447 (570)
|.++-.|.+...|-...... ..+++..++|+|||+|.=+..|..... ...+.+++|||.++++.+..++. ..
T Consensus 51 pEYYptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-- 128 (319)
T TIGR03439 51 PEYYLTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-- 128 (319)
T ss_pred CccCChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc--
Confidence 55554456666665443322 224566899999999987666554331 13679999999999999999987 31
Q ss_pred cCCCCEEEEEcccccccccC-----CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhh-c
Q psy2395 448 KYNIPIKFIKSNWYNNLQNY-----KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASK-Y 521 (570)
Q Consensus 448 ~~~~~v~~~~~D~~~~l~~~-----~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~-~ 521 (570)
-....+.-+++|..+.+... .....+++. | .... -.|+| .....+++.+.+ .
T Consensus 129 ~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~f-l----GSsi------GNf~~-----------~ea~~fL~~~~~~~ 186 (319)
T TIGR03439 129 FSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILW-L----GSSI------GNFSR-----------PEAAAFLAGFLATA 186 (319)
T ss_pred CCCeEEEEEEecHHHHHhhcccccccCCccEEEE-e----Cccc------cCCCH-----------HHHHHHHHHHHHhh
Confidence 02234666899987654321 122344443 0 0000 01222 334678888888 9
Q ss_pred cccCeEEEEEEc
Q psy2395 522 LVKNGLLLIEHG 533 (570)
Q Consensus 522 LkpgG~l~~~~~ 533 (570)
|+|||.|++.+.
T Consensus 187 l~~~d~lLiG~D 198 (319)
T TIGR03439 187 LSPSDSFLIGLD 198 (319)
T ss_pred CCCCCEEEEecC
Confidence 999999988653
No 259
>PRK13699 putative methylase; Provisional
Probab=97.60 E-value=0.00026 Score=69.95 Aligned_cols=90 Identities=17% Similarity=0.224 Sum_probs=62.2
Q ss_pred EEEEEccccccccc-CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 453 IKFIKSNWYNNLQN-YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 453 v~~~~~D~~~~l~~-~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
.+++++|+.+.+.. +++++|+||++|||....... .... ..+.+..+.+..++.++.++|||||.+++-
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~-~~~~---------~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDR-QGRT---------IAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccC-CCcc---------cccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 35788999876533 348999999999996311000 0000 011223356788999999999999999877
Q ss_pred EcCCCHHHHHHHHHHCCCeeE
Q psy2395 532 HGYNQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 532 ~~~~~~~~l~~ll~~~Gf~~i 552 (570)
++..+...+...+.+.||...
T Consensus 72 ~~~~~~~~~~~al~~~GF~l~ 92 (227)
T PRK13699 72 YGWNRVDRFMAAWKNAGFSVV 92 (227)
T ss_pred eccccHHHHHHHHHHCCCEEe
Confidence 777767777888899999754
No 260
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.60 E-value=0.00038 Score=73.77 Aligned_cols=106 Identities=22% Similarity=0.218 Sum_probs=78.0
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
.+.+|||.-+|||.=++-.+++.+...+|++-|+|+.+++..++|++.|+...+ .+.+.+.|+...+......||+|=.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~-~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDE-RIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGC-CEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCc-eEEEehhhHHHHhhhccccCCEEEe
Confidence 356999999999999999999965457999999999999999999998753322 5899999986555333478999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
|| |. ....|+..+.+.++.||.+.+..
T Consensus 128 DP-fG----------------------------Sp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 DP-FG----------------------------SPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ---SS------------------------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-CC----------------------------CccHhHHHHHHHhhcCCEEEEec
Confidence 86 32 22577888888999999998854
No 261
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.57 E-value=0.0007 Score=67.70 Aligned_cols=137 Identities=19% Similarity=0.189 Sum_probs=84.6
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhc--------------ccCC-----------C
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKL--------------TKYN-----------I 451 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~--------------~~~~-----------~ 451 (570)
++.++||+|||.-...+.-|... ..+|+..|..+.-.+..++-++.-+ .+.. .
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~--f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW--FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT--EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh--hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 46689999999866544334332 3589999999988876665544210 0000 0
Q ss_pred CE-EEEEcccccccccC-----CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccC
Q psy2395 452 PI-KFIKSNWYNNLQNY-----KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKN 525 (570)
Q Consensus 452 ~v-~~~~~D~~~~l~~~-----~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkpg 525 (570)
.| .++.+|+.+.-+.. +.+||+|++-. .|-.-....+.|...++++.++||||
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~f---------------------cLE~a~~d~~~y~~al~ni~~lLkpG 192 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSF---------------------CLESACKDLDEYRRALRNISSLLKPG 192 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEES---------------------SHHHH-SSHHHHHHHHHHHHTTEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhH---------------------HHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 13 36778886643321 13599888821 11122234678999999999999999
Q ss_pred eEEEEEE---------cC-------CCHHHHHHHHHHCCCeeEEEEe
Q psy2395 526 GLLLIEH---------GY-------NQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 526 G~l~~~~---------~~-------~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
|.|++.. |. -+.+.+++.++++||.+....+
T Consensus 193 G~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 193 GHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp EEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred cEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEeccc
Confidence 9998732 11 1367889999999998877664
No 262
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.56 E-value=0.00025 Score=64.41 Aligned_cols=59 Identities=15% Similarity=0.153 Sum_probs=49.5
Q ss_pred EEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc
Q psy2395 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN 462 (570)
Q Consensus 400 ~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~ 462 (570)
.+||+|||.|.++..+++.++ .++|+++|.+|.+++.+++|+..|+. .++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~---~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNL---PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCC---CcEEEEEeeeeC
Confidence 489999999999999998875 56999999999999999999987532 248888877643
No 263
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.52 E-value=0.0003 Score=64.14 Aligned_cols=79 Identities=19% Similarity=0.342 Sum_probs=55.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHhc---CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCcee
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYS---KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFN 472 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~---~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD 472 (570)
.+...|+|+|||.|+++..++..+ .++.+|+|||.++..++.|.+..+........++.+..++...... ....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS--SDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc--cCCCe
Confidence 456799999999999999999822 1368999999999999999988876432222356666666543221 23455
Q ss_pred EEEE
Q psy2395 473 IIVA 476 (570)
Q Consensus 473 ~Iv~ 476 (570)
+++.
T Consensus 102 ~~vg 105 (141)
T PF13679_consen 102 ILVG 105 (141)
T ss_pred EEEE
Confidence 5554
No 264
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.49 E-value=0.002 Score=65.54 Aligned_cols=143 Identities=16% Similarity=0.130 Sum_probs=88.0
Q ss_pred EEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC-CCceeEEEECC
Q psy2395 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY-KKLFNIIVANP 478 (570)
Q Consensus 400 ~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~-~~~fD~Iv~NP 478 (570)
+++|++||.|.++..+...+ ...|+++|+++.+++..+.|... .++++|+.+..... ...+|+++..|
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~---------~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPN---------KLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCC---------CCccCccccCchhhcCCCCCEEEeCC
Confidence 68999999999998887665 34689999999999999888752 15667776543321 35799999999
Q ss_pred CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--------CCHHHHHHHHHHCCCe
Q psy2395 479 PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------NQSNLVRKLLFKYGFS 550 (570)
Q Consensus 479 Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------~~~~~l~~ll~~~Gf~ 550 (570)
|.-..+....... ..+++ -..+..+++.+. .++|. ++++|--. .....+...|++.||.
T Consensus 71 PCq~fS~ag~~~~--~~d~r---------~~L~~~~~~~i~-~~~P~-~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~ 137 (275)
T cd00315 71 PCQPFSIAGKRKG--FEDTR---------GTLFFEIIRILK-EKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYN 137 (275)
T ss_pred CChhhhHHhhcCC--CCCch---------HHHHHHHHHHHH-hcCCC-EEEEEcCcchhccCchHHHHHHHHHHHhCCcE
Confidence 9754332110000 00111 123444554333 45665 45554311 1235567778889998
Q ss_pred eEEEEec------CCCCceEEE
Q psy2395 551 DIKSWRD------LSGIERVTQ 566 (570)
Q Consensus 551 ~i~~~~D------~~g~~R~~~ 566 (570)
.....-+ -+.+.|+++
T Consensus 138 ~~~~~l~a~~~GvPQ~R~R~~~ 159 (275)
T cd00315 138 VYWKLLNASDYGVPQNRERVFI 159 (275)
T ss_pred EEEEEEEHHHcCCCCCCcEEEE
Confidence 6443333 356778764
No 265
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.49 E-value=0.0011 Score=64.06 Aligned_cols=128 Identities=20% Similarity=0.342 Sum_probs=87.2
Q ss_pred hHHHHHHHHHhhcCC-----CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEE
Q psy2395 382 ETELLVDLIVKKTFE-----KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFI 456 (570)
Q Consensus 382 ~t~~l~~~~~~~~~~-----~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~ 456 (570)
.+..+++|+...... ...++||+||=+....+.-.. -..|+.||+++.- -.+.
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~----~fdvt~IDLns~~------------------~~I~ 88 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSG----WFDVTRIDLNSQH------------------PGIL 88 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCcccccC----ceeeEEeecCCCC------------------CCce
Confidence 456778888765432 236999999986665544332 2469999997621 2367
Q ss_pred Ecccccc-ccc-CCCceeEEEECC--CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeE-----
Q psy2395 457 KSNWYNN-LQN-YKKLFNIIVANP--PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGL----- 527 (570)
Q Consensus 457 ~~D~~~~-l~~-~~~~fD~Iv~NP--Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~----- 527 (570)
+.|+++- ++. ..++||+|++.. -|+|.+ ..--+++..+.++|+|+|.
T Consensus 89 qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p------------------------~~RG~Ml~r~~~fL~~~g~~~~~~ 144 (219)
T PF11968_consen 89 QQDFMERPLPKNESEKFDVISLSLVLNFVPDP------------------------KQRGEMLRRAHKFLKPPGLSLFPS 144 (219)
T ss_pred eeccccCCCCCCcccceeEEEEEEEEeeCCCH------------------------HHHHHHHHHHHHHhCCCCccCcce
Confidence 7777763 331 247899999852 233322 1124688899999999999
Q ss_pred EEEEEcCC--------CHHHHHHHHHHCCCeeEEEE
Q psy2395 528 LLIEHGYN--------QSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 528 l~~~~~~~--------~~~~l~~ll~~~Gf~~i~~~ 555 (570)
++++.|.. ..+.+..+|...||..++..
T Consensus 145 LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 145 LFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred EEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEE
Confidence 88877652 35778999999999987653
No 266
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.46 E-value=0.0045 Score=63.93 Aligned_cols=86 Identities=12% Similarity=0.178 Sum_probs=61.4
Q ss_pred cchhHHHHHHHHHhhc--------CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCC
Q psy2395 379 PRPETELLVDLIVKKT--------FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYN 450 (570)
Q Consensus 379 pr~~t~~l~~~~~~~~--------~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~ 450 (570)
|...+..|.+.+.... ..++.++||+||++|.++..+++.+ ++|+|||..+-. . .+. ..
T Consensus 185 pSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g~l~----~-~L~-----~~ 251 (357)
T PRK11760 185 PSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNGPMA----Q-SLM-----DT 251 (357)
T ss_pred CChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcC---CEEEEEechhcC----H-hhh-----CC
Confidence 4445556655544332 2467899999999999999999764 599999966522 1 122 34
Q ss_pred CCEEEEEcccccccccCCCceeEEEECC
Q psy2395 451 IPIKFIKSNWYNNLQNYKKLFNIIVANP 478 (570)
Q Consensus 451 ~~v~~~~~D~~~~l~~~~~~fD~Iv~NP 478 (570)
.+|..+.+|.+...+. .+++|+++|+-
T Consensus 252 ~~V~h~~~d~fr~~p~-~~~vDwvVcDm 278 (357)
T PRK11760 252 GQVEHLRADGFKFRPP-RKNVDWLVCDM 278 (357)
T ss_pred CCEEEEeccCcccCCC-CCCCCEEEEec
Confidence 5799999998876653 47899999963
No 267
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.00065 Score=70.13 Aligned_cols=102 Identities=19% Similarity=0.308 Sum_probs=80.6
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEEC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVAN 477 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~N 477 (570)
+.+|+|.-+|||.=++-.|.+.+ ..+|+.-|+||.+++.+++|+..| .+.+...+..|+...+......||+|=.+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N---~~~~~~v~n~DAN~lm~~~~~~fd~IDiD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLN---SGEDAEVINKDANALLHELHRAFDVIDID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhc---CcccceeecchHHHHHHhcCCCccEEecC
Confidence 67999999999999999999876 349999999999999999999985 24456677788866555444789999887
Q ss_pred CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 478 PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 478 PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
| |.+ ...|+..+.+.++.||++.+..
T Consensus 129 P-FGS----------------------------PaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 129 P-FGS----------------------------PAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred C-CCC----------------------------CchHHHHHHHHhhcCCEEEEEe
Confidence 5 332 1356677777888899998743
No 268
>KOG4589|consensus
Probab=97.46 E-value=0.0014 Score=61.28 Aligned_cols=136 Identities=10% Similarity=0.100 Sum_probs=85.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEc-ccccccc-------cC
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKS-NWYNNLQ-------NY 467 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~-D~~~~l~-------~~ 467 (570)
.++.+|||+||-.|..+....+...++..|.|||+-+-. .-..+.++++ |+.++.. .+
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~--------------p~~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE--------------PPEGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc--------------CCCCcccccccccCCHHHHHHHHHhCC
Confidence 578899999999999999988887567899999985321 1112556666 6654311 12
Q ss_pred CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-cCCCHHHHHHHHHH
Q psy2395 468 KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-GYNQSNLVRKLLFK 546 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~l~~ll~~ 546 (570)
+.+.|+|+++.--...... ...|+ ..++.-..++-.+...++|+|.+++-+ ..++...+++.|.+
T Consensus 134 ~r~VdvVlSDMapnaTGvr-----~~Dh~---------~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~ 199 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVR-----IRDHY---------RSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQA 199 (232)
T ss_pred CCcccEEEeccCCCCcCcc-----hhhHH---------HHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHH
Confidence 3689999997321111100 00010 112233345566778899999998854 34555666666665
Q ss_pred CCCeeEEEEecCCC
Q psy2395 547 YGFSDIKSWRDLSG 560 (570)
Q Consensus 547 ~Gf~~i~~~~D~~g 560 (570)
-|+.|+..+.-+.
T Consensus 200 -~f~~Vk~vKP~As 212 (232)
T KOG4589|consen 200 -VFTNVKKVKPDAS 212 (232)
T ss_pred -HhhhcEeeCCccc
Confidence 4888877765444
No 269
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.45 E-value=0.00056 Score=70.06 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=66.0
Q ss_pred HHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc-
Q psy2395 388 DLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ- 465 (570)
Q Consensus 388 ~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~- 465 (570)
+.++..+. .++..++|.-||.|..+..++...+ .++|+|+|.|+.+++.|++++.. ...++.++++++.+...
T Consensus 10 ~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~----~~~R~~~i~~nF~~l~~~ 84 (305)
T TIGR00006 10 DEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSD----FEGRVVLIHDNFANFFEH 84 (305)
T ss_pred HHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhh----cCCcEEEEeCCHHHHHHH
Confidence 33444332 4677999999999999999998875 48999999999999999998864 35579999999865322
Q ss_pred --c-CCCceeEEEECC
Q psy2395 466 --N-YKKLFNIIVANP 478 (570)
Q Consensus 466 --~-~~~~fD~Iv~NP 478 (570)
. ...++|.|+.|.
T Consensus 85 l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 85 LDELLVTKIDGILVDL 100 (305)
T ss_pred HHhcCCCcccEEEEec
Confidence 1 114699999853
No 270
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.0035 Score=61.22 Aligned_cols=123 Identities=17% Similarity=0.197 Sum_probs=85.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEE-EEEcccccccc-cCCCceeE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIK-FIKSNWYNNLQ-NYKKLFNI 473 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~-~~~~D~~~~l~-~~~~~fD~ 473 (570)
.++..+||+|+.||.++-.+.+.+ ..+|+|+|..-..+..--++ +.++. +...|+....+ ...+..|+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~kLR~--------d~rV~~~E~tN~r~l~~~~~~~~~d~ 147 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWKLRN--------DPRVIVLERTNVRYLTPEDFTEKPDL 147 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHhHhc--------CCcEEEEecCChhhCCHHHcccCCCe
Confidence 578899999999999999999886 47999999988777654332 33443 34455533211 12257899
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC------CC-----------
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY------NQ----------- 536 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~------~~----------- 536 (570)
|+++-.|+ ....++..+..+++|+|.++.-+.+ ..
T Consensus 148 ~v~DvSFI----------------------------SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~ 199 (245)
T COG1189 148 IVIDVSFI----------------------------SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPK 199 (245)
T ss_pred EEEEeehh----------------------------hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcc
Confidence 99987776 3467788888889998887653311 11
Q ss_pred -----HHHHHHHHHHCCCeeEEEEe
Q psy2395 537 -----SNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 537 -----~~~l~~ll~~~Gf~~i~~~~ 556 (570)
...+.+++.+.||....+..
T Consensus 200 ~~~~v~~~i~~~~~~~g~~~~gl~~ 224 (245)
T COG1189 200 LHAEVLSKIENFAKELGFQVKGLIK 224 (245)
T ss_pred hHHHHHHHHHHHHhhcCcEEeeeEc
Confidence 24677788888999876554
No 271
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.33 E-value=0.0035 Score=55.47 Aligned_cols=102 Identities=17% Similarity=0.277 Sum_probs=66.8
Q ss_pred EEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCC-EEEEEcccccc-cccCC-CceeEEEEC
Q psy2395 401 LLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIP-IKFIKSNWYNN-LQNYK-KLFNIIVAN 477 (570)
Q Consensus 401 VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~-v~~~~~D~~~~-l~~~~-~~fD~Iv~N 477 (570)
++|+|||+|... .++........++|+|+++.++..++..... .... +.+..+|.... .+... ..||++.+.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG----AGLGLVDFVVADALGGVLPFEDSASFDLVISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh----cCCCceEEEEeccccCCCCCCCCCceeEEeee
Confidence 999999999976 3333332124899999999999995554431 0111 67888887652 34322 379999443
Q ss_pred CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 478 PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 478 PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
..+... . ....+..+.+.|+|+|.+++...
T Consensus 127 ~~~~~~-------------------------~-~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 127 LVLHLL-------------------------P-PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred eehhcC-------------------------C-HHHHHHHHHHhcCCCcEEEEEec
Confidence 221100 0 36788888899999999887554
No 272
>KOG3201|consensus
Probab=97.28 E-value=0.00033 Score=63.86 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHhhcC-CCCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEc
Q psy2395 381 PETELLVDLIVKKTF-EKKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKS 458 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~-~~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~ 458 (570)
|..+.+.-.++.... -.+.+||++|.| +|.-++.+|...+ ...|..+|-++++++..++....|-.....++..+.-
T Consensus 12 pseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw 90 (201)
T KOG3201|consen 12 PSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRW 90 (201)
T ss_pred ccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccceehhhHH
Confidence 555666555554321 145789999999 6666777777765 5899999999999998887765531111123333333
Q ss_pred cccccc-ccCCCceeEEEECC-CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--
Q psy2395 459 NWYNNL-QNYKKLFNIIVANP-PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-- 534 (570)
Q Consensus 459 D~~~~l-~~~~~~fD~Iv~NP-Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-- 534 (570)
++.... ......||.|++-- -|+ -++...++..+..+|+|.|..++..|.
T Consensus 91 ~~~~aqsq~eq~tFDiIlaADClFf--------------------------dE~h~sLvdtIk~lL~p~g~Al~fsPRRg 144 (201)
T KOG3201|consen 91 LIWGAQSQQEQHTFDIILAADCLFF--------------------------DEHHESLVDTIKSLLRPSGRALLFSPRRG 144 (201)
T ss_pred HHhhhHHHHhhCcccEEEeccchhH--------------------------HHHHHHHHHHHHHHhCcccceeEecCccc
Confidence 332211 11225899999821 111 135578899999999999996554432
Q ss_pred CCHHHHHHHHHHCCCeeE
Q psy2395 535 NQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 535 ~~~~~l~~ll~~~Gf~~i 552 (570)
.....+.+.....||.+.
T Consensus 145 ~sL~kF~de~~~~gf~v~ 162 (201)
T KOG3201|consen 145 QSLQKFLDEVGTVGFTVC 162 (201)
T ss_pred chHHHHHHHHHhceeEEE
Confidence 234555566667788754
No 273
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.28 E-value=0.00062 Score=72.96 Aligned_cols=114 Identities=13% Similarity=0.238 Sum_probs=66.9
Q ss_pred EEEEECCcccHHHHHHHHhcCCCcEEEEE---eCCHHHHHHHHHHHHhhcccCCCCEEEEEccc-ccccccCCCceeEEE
Q psy2395 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIAT---DISKFALKIAKKNAKKKLTKYNIPIKFIKSNW-YNNLQNYKKLFNIIV 475 (570)
Q Consensus 400 ~VLDlGcGtG~i~l~la~~~~~~~~V~gv---Dis~~al~~A~~n~~~~~~~~~~~v~~~~~D~-~~~l~~~~~~fD~Iv 475 (570)
.+||+|||+|.++..|..+. ..+..+ |..+..++.|.+. +.. -+.+-+ ..-++.+...||+|-
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~---V~t~s~a~~d~~~~qvqfaleR--------Gvp--a~~~~~~s~rLPfp~~~fDmvH 186 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERN---VTTMSFAPNDEHEAQVQFALER--------GVP--AMIGVLGSQRLPFPSNAFDMVH 186 (506)
T ss_pred EEEeccceeehhHHHHhhCC---ceEEEcccccCCchhhhhhhhc--------Ccc--hhhhhhccccccCCccchhhhh
Confidence 68999999999999998543 333222 4444555555432 111 111111 234677778999998
Q ss_pred EC---CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC----------HHHHHH
Q psy2395 476 AN---PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ----------SNLVRK 542 (570)
Q Consensus 476 ~N---PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------~~~l~~ 542 (570)
|- -|++.. +| .++-++.|+|+|||++++.-++-. -..+.+
T Consensus 187 csrc~i~W~~~----------------------~g-----~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~ 239 (506)
T PF03141_consen 187 CSRCLIPWHPN----------------------DG-----FLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMED 239 (506)
T ss_pred cccccccchhc----------------------cc-----ceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHH
Confidence 83 222211 12 255578899999999998665422 123455
Q ss_pred HHHHCCCeeEE
Q psy2395 543 LLFKYGFSDIK 553 (570)
Q Consensus 543 ll~~~Gf~~i~ 553 (570)
+.++..|+.+.
T Consensus 240 l~~~lCW~~va 250 (506)
T PF03141_consen 240 LAKSLCWKKVA 250 (506)
T ss_pred HHHHHHHHHhe
Confidence 55555555443
No 274
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.014 Score=55.59 Aligned_cols=127 Identities=18% Similarity=0.158 Sum_probs=89.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc--CCCceeE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN--YKKLFNI 473 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~--~~~~fD~ 473 (570)
+++.+||=+|+-+|.....++.-.+ ...|+|||.||......-.-+.. ..++-.+.+|+..+... .-+..|+
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~-----R~Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK-----RPNIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh-----CCCceeeecccCCcHHhhhhcccccE
Confidence 5788999999999999988887765 57899999999887666555543 34578888998665432 1267999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC------CHH----HHHHH
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN------QSN----LVRKL 543 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~------~~~----~l~~l 543 (570)
|+.+-.- | +-.+-+..++..+|++||.+++.+... .++ ...+.
T Consensus 149 iy~DVAQ----------------p-----------~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~k 201 (231)
T COG1889 149 IYQDVAQ----------------P-----------NQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEK 201 (231)
T ss_pred EEEecCC----------------c-----------hHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHH
Confidence 9985210 0 123567788899999999887755321 222 23345
Q ss_pred HHHCCCeeEEEE
Q psy2395 544 LFKYGFSDIKSW 555 (570)
Q Consensus 544 l~~~Gf~~i~~~ 555 (570)
|.+.||..++..
T Consensus 202 L~~~~f~i~e~~ 213 (231)
T COG1889 202 LEEGGFEILEVV 213 (231)
T ss_pred HHhcCceeeEEe
Confidence 667788877654
No 275
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.26 E-value=0.0059 Score=62.11 Aligned_cols=126 Identities=18% Similarity=0.143 Sum_probs=73.9
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc-ccccCCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN-NLQNYKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~-~l~~~~~~fD~Iv 475 (570)
.+.+|||+|||+|.-+.++...++.-.+++++|.|+.|++.++.-+... ..........+... ..+. .+.|+|+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~--~~~DLvi 107 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG---PNNRNAEWRRVLYRDFLPF--PPDDLVI 107 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc---cccccchhhhhhhcccccC--CCCcEEE
Confidence 4679999999999877777666554568999999999999999877642 11111111111211 1111 3349999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE-EEcCCC----HHHHHHHHHHCCCe
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI-EHGYNQ----SNLVRKLLFKYGFS 550 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~-~~~~~~----~~~l~~ll~~~Gf~ 550 (570)
+.--...- .+ .....+++.++..+.+ .+++ |-|... ...+++.|.+.|+.
T Consensus 108 ~s~~L~EL----------------------~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~ 162 (274)
T PF09243_consen 108 ASYVLNEL----------------------PS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAH 162 (274)
T ss_pred EehhhhcC----------------------Cc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCc
Confidence 83111100 01 2335677777777665 4443 433332 34566667667776
Q ss_pred eE
Q psy2395 551 DI 552 (570)
Q Consensus 551 ~i 552 (570)
++
T Consensus 163 v~ 164 (274)
T PF09243_consen 163 VV 164 (274)
T ss_pred eE
Confidence 54
No 276
>PRK11524 putative methyltransferase; Provisional
Probab=97.25 E-value=0.00074 Score=69.12 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=57.8
Q ss_pred CEEEEEccccccccc-CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 452 PIKFIKSNWYNNLQN-YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 452 ~v~~~~~D~~~~l~~-~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
...++++|+.+.+.. .+++||+|++||||............ . ...+-.+.+..++..+.++|||||.+++
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~--------~-~~~~~~~~l~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEA--------W-KEDLFIDWLYEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCccccccccccccc--------c-cHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 357899999875432 24789999999999742211000000 0 0111224467899999999999999998
Q ss_pred EEcCCCHHHHHHHHHHCCCeeE
Q psy2395 531 EHGYNQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 531 ~~~~~~~~~l~~ll~~~Gf~~i 552 (570)
.++......+ .++.+.||...
T Consensus 79 ~~~~~~~~~~-~~~~~~~f~~~ 99 (284)
T PRK11524 79 MNSTENMPFI-DLYCRKLFTIK 99 (284)
T ss_pred EcCchhhhHH-HHHHhcCcceE
Confidence 7766555543 44556677543
No 277
>KOG2198|consensus
Probab=97.22 E-value=0.0044 Score=64.11 Aligned_cols=162 Identities=16% Similarity=0.190 Sum_probs=100.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcC---CCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc--c------
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSK---NKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN--L------ 464 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~---~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~--l------ 464 (570)
.++.+|||+|+-.|.=++.+..... ....|++-|+++.-+.....-+... ....+.+...|+... .
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l---~~~~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL---PSPNLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc---CCcceeeecccceeccccccccCc
Confidence 6889999999999998887776542 1238999999999988887766432 233344444443211 1
Q ss_pred ccCCCceeEEEECCCCCCCCCcccCCCCccccc-cccccccCCChH-HHHHHHHHHhhccccCeEEEEEEcC----CCHH
Q psy2395 465 QNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEP-INALTDYSNGLS-SIKEIVKNASKYLVKNGLLLIEHGY----NQSN 538 (570)
Q Consensus 465 ~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep-~~al~~~~~gl~-~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~ 538 (570)
......||-|+++-|-............. .+ +... ..-++. .--.++....+.||+||.++..+.. .+..
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~--~~~w~~~--~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEa 306 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIW--KEGWKTQ--RALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEA 306 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHh--hhhhhhh--hccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHH
Confidence 11125799999998854432211111111 11 1100 012332 3357899999999999999986532 4455
Q ss_pred HHHHHHHHCC--CeeEEEEecCCCCceE
Q psy2395 539 LVRKLLFKYG--FSDIKSWRDLSGIERV 564 (570)
Q Consensus 539 ~l~~ll~~~G--f~~i~~~~D~~g~~R~ 564 (570)
-+.++++..| +..+.+..++.+.-|+
T Consensus 307 VV~~~L~~~~~~~~lv~~~~~lp~l~r~ 334 (375)
T KOG2198|consen 307 VVQEALQKVGGAVELVDVSGDLPGLKRM 334 (375)
T ss_pred HHHHHHHHhcCcccceeeccccccceec
Confidence 5677777654 6667777777666554
No 278
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.19 E-value=0.0014 Score=64.35 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=50.2
Q ss_pred CEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCC------CCEEEEEcccccccccCCCcee
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYN------IPIKFIKSNWYNNLQNYKKLFN 472 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~------~~v~~~~~D~~~~l~~~~~~fD 472 (570)
.+|||.-||-|.-++.+|..+ ++|+++|-||-...+.+.-+........ .+++++.+|..+.+.....+||
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G---~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~D 153 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLG---CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFD 153 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--S
T ss_pred CEEEECCCcchHHHHHHHccC---CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCC
Confidence 489999999999999999653 6899999999776666644433211122 2699999999887775458999
Q ss_pred EEEECCCCCC
Q psy2395 473 IIVANPPYIP 482 (570)
Q Consensus 473 ~Iv~NPPy~~ 482 (570)
+|.++|-|-.
T Consensus 154 VVY~DPMFp~ 163 (234)
T PF04445_consen 154 VVYFDPMFPE 163 (234)
T ss_dssp EEEE--S---
T ss_pred EEEECCCCCC
Confidence 9999998854
No 279
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.17 E-value=0.0033 Score=63.55 Aligned_cols=146 Identities=15% Similarity=0.176 Sum_probs=74.1
Q ss_pred CCCEEEEECCcccHH-HHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAI-AIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i-~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.+.+|+=||||.=-+ ++.+++....+..|+++|+|+++++.|++-.... .+++.++.|+++|..+.... -..||+|+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~-~~L~~~m~f~~~d~~~~~~d-l~~~DvV~ 197 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASD-LGLSKRMSFITADVLDVTYD-LKEYDVVF 197 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----HH-SSEEEEES-GGGG-GG-----SEEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhc-ccccCCeEEEecchhccccc-cccCCEEE
Confidence 346999999995544 5555544333578999999999999999877621 12466799999998654322 25799998
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCH----HHHHHHHHHCCCee
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQS----NLVRKLLFKYGFSD 551 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~----~~l~~ll~~~Gf~~ 551 (570)
.. |+.|.... .-.+++..+.+.++||..+++-...+-. +.+ +-..-.||..
T Consensus 198 lA----------------------alVg~~~e--~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~v-d~~~l~gf~~ 252 (276)
T PF03059_consen 198 LA----------------------ALVGMDAE--PKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPVV-DPEDLRGFEV 252 (276)
T ss_dssp E-----------------------TT-S------SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS-----TGGGTTEEE
T ss_pred Eh----------------------hhcccccc--hHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCCC-ChHHCCCeEE
Confidence 82 23331111 1268999999999999999885433211 111 1001128988
Q ss_pred EEEEecC-CCCceEEEEEe
Q psy2395 552 IKSWRDL-SGIERVTQGKI 569 (570)
Q Consensus 552 i~~~~D~-~g~~R~~~~~~ 569 (570)
..+..-. .=.+-++++|+
T Consensus 253 ~~~~hP~~~ViNSvv~~rk 271 (276)
T PF03059_consen 253 LAVVHPTDEVINSVVFARK 271 (276)
T ss_dssp EEEE---TT---EEEEE--
T ss_pred EEEECCCCCceeEEEEEEe
Confidence 6555433 23446666654
No 280
>KOG1709|consensus
Probab=97.10 E-value=0.0052 Score=58.84 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=79.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC-CCceeE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY-KKLFNI 473 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~-~~~fD~ 473 (570)
..++.+||.+|-|-|.+...+-.. ++ .+=+-+|.+|+.++..+.+... ...+|-++.|-+.+.++.. ++.||-
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~gw~----ek~nViil~g~WeDvl~~L~d~~FDG 172 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDWGWR----EKENVIILEGRWEDVLNTLPDKHFDG 172 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhcccc----cccceEEEecchHhhhccccccCcce
Confidence 357889999999999988877654 43 4556789999999999988764 3456888888776554432 367999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
|+-+. |. .-.+.+..+.+.+.++|||+|.+-+.-+.
T Consensus 173 I~yDT-y~------------------------e~yEdl~~~hqh~~rLLkP~gv~SyfNg~ 208 (271)
T KOG1709|consen 173 IYYDT-YS------------------------ELYEDLRHFHQHVVRLLKPEGVFSYFNGL 208 (271)
T ss_pred eEeec-hh------------------------hHHHHHHHHHHHHhhhcCCCceEEEecCc
Confidence 99852 10 11245677888899999999999765443
No 281
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.02 E-value=0.0032 Score=62.22 Aligned_cols=85 Identities=13% Similarity=0.147 Sum_probs=61.2
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN 463 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~ 463 (570)
+.+.+.+.... +.+.+|+|||||.--+++.+....+ +..++|+|||..+++....-+.. .+.+..+...|+...
T Consensus 93 d~fY~~if~~~-~~p~sVlDigCGlNPlalp~~~~~~-~a~Y~a~DID~~~ve~l~~~l~~----l~~~~~~~v~Dl~~~ 166 (251)
T PF07091_consen 93 DEFYDEIFGRI-PPPDSVLDIGCGLNPLALPWMPEAP-GATYIAYDIDSQLVEFLNAFLAV----LGVPHDARVRDLLSD 166 (251)
T ss_dssp HHHHHHHCCCS----SEEEEET-TTCHHHHHTTTSST-T-EEEEEESBHHHHHHHHHHHHH----TT-CEEEEEE-TTTS
T ss_pred HHHHHHHHhcC-CCCchhhhhhccCCceehhhcccCC-CcEEEEEeCCHHHHHHHHHHHHh----hCCCcceeEeeeecc
Confidence 44455554432 3478999999999999998875544 68999999999999999988776 566788888899776
Q ss_pred cccCCCceeEEEE
Q psy2395 464 LQNYKKLFNIIVA 476 (570)
Q Consensus 464 l~~~~~~fD~Iv~ 476 (570)
.+. ...|+.+.
T Consensus 167 ~~~--~~~DlaLl 177 (251)
T PF07091_consen 167 PPK--EPADLALL 177 (251)
T ss_dssp HTT--SEESEEEE
T ss_pred CCC--CCcchhhH
Confidence 443 67898887
No 282
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.95 E-value=0.013 Score=58.67 Aligned_cols=140 Identities=12% Similarity=0.175 Sum_probs=75.6
Q ss_pred hHHHHHHHHHhhcCCC-C-CEEEEECCcc--cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEE
Q psy2395 382 ETELLVDLIVKKTFEK-K-IKLLEMGTGS--GAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIK 457 (570)
Q Consensus 382 ~t~~l~~~~~~~~~~~-~-~~VLDlGcGt--G~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~ 457 (570)
.++.++..+...+... + ..+||||||- -...-.+|+...+.++|+=||++|-.+..++..+..+ ......+++
T Consensus 51 ~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~---~~g~t~~v~ 127 (267)
T PF04672_consen 51 ANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN---PRGRTAYVQ 127 (267)
T ss_dssp HHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT----TTSEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC---CCccEEEEe
Confidence 3444445555544333 3 3699999993 2334555655555899999999999999999888742 112489999
Q ss_pred cccccccccC-----------CCceeEEEEC-CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccC
Q psy2395 458 SNWYNNLQNY-----------KKLFNIIVAN-PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKN 525 (570)
Q Consensus 458 ~D~~~~l~~~-----------~~~fD~Iv~N-PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkpg 525 (570)
+|+.++-.-. +.+.=+++.. .+|++. -+....++....+.|.||
T Consensus 128 aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D------------------------~~dp~~iv~~l~d~lapG 183 (267)
T PF04672_consen 128 ADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPD------------------------DDDPAGIVARLRDALAPG 183 (267)
T ss_dssp --TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-C------------------------GCTHHHHHHHHHCCS-TT
T ss_pred CCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCC------------------------ccCHHHHHHHHHHhCCCC
Confidence 9997642111 1222233221 112211 123478899999999999
Q ss_pred eEEEEEEcCC--CH---HHHHHHHHHCC
Q psy2395 526 GLLLIEHGYN--QS---NLVRKLLFKYG 548 (570)
Q Consensus 526 G~l~~~~~~~--~~---~~l~~ll~~~G 548 (570)
.++++.+... .. ..+...+.+.|
T Consensus 184 S~L~ish~t~d~~p~~~~~~~~~~~~~~ 211 (267)
T PF04672_consen 184 SYLAISHATDDGAPERAEALEAVYAQAG 211 (267)
T ss_dssp -EEEEEEEB-TTSHHHHHHHHHHHHHCC
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHcCC
Confidence 9999976432 22 33555555544
No 283
>KOG3178|consensus
Probab=96.95 E-value=0.006 Score=62.85 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=74.6
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEEC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVAN 477 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~N 477 (570)
-...+|+|.|.|.++-.+...+| +|-+++.+...+-.+..+.. ..|..+-+|.+...| +-|+|++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~~P----~~daI~m- 242 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQDTP----KGDAIWM- 242 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-------CCcceecccccccCC----CcCeEEE-
Confidence 46899999999999999988765 58999999988888877763 128889999988754 3568887
Q ss_pred CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 478 PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 478 PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
.+.-+.-.-+...+|++++++.|+|||.+++
T Consensus 243 ----------------------kWiLhdwtDedcvkiLknC~~sL~~~GkIiv 273 (342)
T KOG3178|consen 243 ----------------------KWILHDWTDEDCVKILKNCKKSLPPGGKIIV 273 (342)
T ss_pred ----------------------EeecccCChHHHHHHHHHHHHhCCCCCEEEE
Confidence 1222223345668999999999999999887
No 284
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=96.87 E-value=0.019 Score=53.47 Aligned_cols=136 Identities=15% Similarity=0.244 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccc
Q psy2395 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNW 460 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~ 460 (570)
.....|++.+... ..+..+|+=|||=|-...+.-. . ....+++..|+|...-.. +.+ .|+.-|.
T Consensus 10 ~T~~~l~~~l~~~-~~~~~~iaclstPsl~~~l~~~-~-~~~~~~~Lle~D~RF~~~------------~~~-~F~fyD~ 73 (162)
T PF10237_consen 10 ETAEFLARELLDG-ALDDTRIACLSTPSLYEALKKE-S-KPRIQSFLLEYDRRFEQF------------GGD-EFVFYDY 73 (162)
T ss_pred HHHHHHHHHHHHh-cCCCCEEEEEeCcHHHHHHHhh-c-CCCccEEEEeecchHHhc------------CCc-ceEECCC
Confidence 3455666666553 2356799999998877766541 2 225789999999876321 222 3555555
Q ss_pred cccccc---CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCH
Q psy2395 461 YNNLQN---YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQS 537 (570)
Q Consensus 461 ~~~l~~---~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 537 (570)
..+... ..++||+||++|||... +........+..++++++.+++.+|....
T Consensus 74 ~~p~~~~~~l~~~~d~vv~DPPFl~~-------------------------ec~~k~a~ti~~L~k~~~kii~~Tg~~~~ 128 (162)
T PF10237_consen 74 NEPEELPEELKGKFDVVVIDPPFLSE-------------------------ECLTKTAETIRLLLKPGGKIILCTGEEME 128 (162)
T ss_pred CChhhhhhhcCCCceEEEECCCCCCH-------------------------HHHHHHHHHHHHHhCccceEEEecHHHHH
Confidence 443221 23799999999999643 24456666667777889999999988888
Q ss_pred HHHHHHHHHCCCeeEEEEecCCC
Q psy2395 538 NLVRKLLFKYGFSDIKSWRDLSG 560 (570)
Q Consensus 538 ~~l~~ll~~~Gf~~i~~~~D~~g 560 (570)
+.+.+++ |++.........+
T Consensus 129 ~~~~~ll---~~~~~~f~p~h~~ 148 (162)
T PF10237_consen 129 ELIKKLL---GLRMCDFQPEHPN 148 (162)
T ss_pred HHHHHHh---CeeEEeEEecccc
Confidence 8888877 7777666655443
No 285
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.87 E-value=0.0026 Score=62.10 Aligned_cols=54 Identities=26% Similarity=0.260 Sum_probs=41.9
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
..|++.++.....++..|||.+||||..++++.+.+ .+.+|+|+++..++.|++
T Consensus 178 ~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~---R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELG---RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhhhccceeeehhhhccChHHHHHHHcC---CeEEEEeCCHHHHHHhcC
Confidence 556666666556788999999999999999887664 579999999999999975
No 286
>PRK11524 putative methyltransferase; Provisional
Probab=96.82 E-value=0.0034 Score=64.21 Aligned_cols=58 Identities=16% Similarity=0.102 Sum_probs=48.9
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
..|++.++.....+++.|||.+||||..++++.+.+ -+.+|+|++++.++.|++.+..
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lg---R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASG---RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcC---CCEEEEeCCHHHHHHHHHHHHh
Confidence 566666666656789999999999999999887665 4799999999999999998763
No 287
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.80 E-value=0.02 Score=56.83 Aligned_cols=130 Identities=18% Similarity=0.267 Sum_probs=93.0
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCC-CEEEEEccccccccc-CCCceeEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNI-PIKFIKSNWYNNLQN-YKKLFNII 474 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~-~v~~~~~D~~~~l~~-~~~~fD~I 474 (570)
.+..|+-+| ---..+++++..+- ..+|.-+||++..+....+-++.. +. ++..+.-|+.+++|. ...+||+.
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~m-pk~iaVvDIDERli~fi~k~aee~----g~~~ie~~~~Dlr~plpe~~~~kFDvf 225 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGM-PKRIAVVDIDERLIKFIEKVAEEL----GYNNIEAFVFDLRNPLPEDLKRKFDVF 225 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCC-CceEEEEechHHHHHHHHHHHHHh----CccchhheeehhcccChHHHHhhCCee
Confidence 466799988 55556677665543 368999999999999999999874 44 388999999887764 23789999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccC---eEEEEEEcCCCH---HHHHH-HHHHC
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKN---GLLLIEHGYNQS---NLVRK-LLFKY 547 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkpg---G~l~~~~~~~~~---~~l~~-ll~~~ 547 (570)
+.+||+-- ..++.|+......||.- |++.+....... .++++ +..+.
T Consensus 226 iTDPpeTi--------------------------~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~ 279 (354)
T COG1568 226 ITDPPETI--------------------------KALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEM 279 (354)
T ss_pred ecCchhhH--------------------------HHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhc
Confidence 99999752 24567777777778766 777765554443 34566 56678
Q ss_pred CCeeEEEEecC
Q psy2395 548 GFSDIKSWRDL 558 (570)
Q Consensus 548 Gf~~i~~~~D~ 558 (570)
||.+..+.+++
T Consensus 280 gvVITdiirnF 290 (354)
T COG1568 280 GVVITDIIRNF 290 (354)
T ss_pred CeeeHhhhhhh
Confidence 88765555443
No 288
>KOG3115|consensus
Probab=96.71 E-value=0.012 Score=56.01 Aligned_cols=119 Identities=15% Similarity=0.171 Sum_probs=74.8
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcc----cCCCCEEEEEcccccccccCC--Cc
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT----KYNIPIKFIKSNWYNNLQNYK--KL 470 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~----~~~~~v~~~~~D~~~~l~~~~--~~ 470 (570)
....+.|||||-|.+.+.|+-.+| ..-+.|.||-....+..+..+..... +.-.++.+...+++..++..- +.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgq 138 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQ 138 (249)
T ss_pred ccceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcc
Confidence 345799999999999999998887 68899999999999988888775421 112247788888776665321 22
Q ss_pred eeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 471 FNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 471 fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
.+-++. ..++.+.-.. .+ .+.-.-..++.+..-+|++||.++..+.
T Consensus 139 Lskmff-----~fpdpHfk~~--kh----------k~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 139 LSKMFF-----LFPDPHFKAR--KH----------KWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred ccccee-----ecCChhHhhh--hc----------cceeechhHHHHHHhhhhcCceEEEEee
Confidence 222221 1111110000 00 0001124567777789999999987654
No 289
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.61 E-value=0.011 Score=67.98 Aligned_cols=131 Identities=12% Similarity=0.117 Sum_probs=85.4
Q ss_pred CCCEEEEECCcccHHHHHHHHhc-------CC----CcEEEEEeCCHH---HHHHHH-----------HHHHh-----hc
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS-------KN----KIEIIATDISKF---ALKIAK-----------KNAKK-----KL 446 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~-------~~----~~~V~gvDis~~---al~~A~-----------~n~~~-----~~ 446 (570)
..-+|+|+|-|+|...+...+.+ ++ ..+++++|..|- -+..+. ..... .+
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 45799999999999877666443 11 358999998662 222221 11111 00
Q ss_pred c------cCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhh
Q psy2395 447 T------KYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASK 520 (570)
Q Consensus 447 ~------~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~ 520 (570)
. .....+++..||+.+.++.....||+|+.++ |.|...+ .+ .-..++..+.+
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~-FsP~~np-----------~~----------W~~~~~~~l~~ 194 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDG-FAPAKNP-----------DM----------WSPNLFNALAR 194 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCC-CCCccCh-----------hh----------ccHHHHHHHHH
Confidence 0 0112466888999877765556799999985 2222211 00 11678889999
Q ss_pred ccccCeEEEEEEcCCCHHHHHHHHHHCCCeeE
Q psy2395 521 YLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 521 ~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i 552 (570)
+++|||.+. .+.....+++-|..+||.+-
T Consensus 195 ~~~~~~~~~---t~t~a~~vr~~l~~~GF~v~ 223 (662)
T PRK01747 195 LARPGATLA---TFTSAGFVRRGLQEAGFTVR 223 (662)
T ss_pred HhCCCCEEE---EeehHHHHHHHHHHcCCeee
Confidence 999999886 34577889999999999754
No 290
>PRK13699 putative methylase; Provisional
Probab=96.47 E-value=0.0086 Score=59.19 Aligned_cols=58 Identities=10% Similarity=0.096 Sum_probs=47.5
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
..|++.++.....++..|||..||||..+++..+.+ .+.+|+|+++...+.|.+.+..
T Consensus 150 ~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~---r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 150 VTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSG---RRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcC---CCEEEEecCHHHHHHHHHHHHH
Confidence 455566665545678899999999999999887654 4799999999999999988875
No 291
>KOG3987|consensus
Probab=96.44 E-value=0.00067 Score=64.30 Aligned_cols=41 Identities=32% Similarity=0.434 Sum_probs=34.7
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.+.++||+|+|.|-++..++-.+ .+|+|.|.|..|....++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKK 152 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhh
Confidence 46799999999999999998554 479999999999877654
No 292
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.39 E-value=0.018 Score=58.22 Aligned_cols=79 Identities=18% Similarity=0.165 Sum_probs=64.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---cC-CCc
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---NY-KKL 470 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---~~-~~~ 470 (570)
+.++...+|.--|-|..+..+...++...+++|+|-||.+++.|++.+.. ++.++.++++++.+... .. .++
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~----~~~r~~~v~~~F~~l~~~l~~~~i~~ 96 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE----FDGRVTLVHGNFANLAEALKELGIGK 96 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc----cCCcEEEEeCcHHHHHHHHHhcCCCc
Confidence 45678999999999999999999887678899999999999999999875 56789999998754221 11 257
Q ss_pred eeEEEEC
Q psy2395 471 FNIIVAN 477 (570)
Q Consensus 471 fD~Iv~N 477 (570)
+|.|+.+
T Consensus 97 vDGiL~D 103 (314)
T COG0275 97 VDGILLD 103 (314)
T ss_pred eeEEEEe
Confidence 8888774
No 293
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=96.33 E-value=0.0052 Score=53.15 Aligned_cols=65 Identities=22% Similarity=0.357 Sum_probs=43.6
Q ss_pred ceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC------CHHHHHHH
Q psy2395 470 LFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN------QSNLVRKL 543 (570)
Q Consensus 470 ~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~------~~~~l~~l 543 (570)
+||+||.||||........... ......+.|.-|++.+.++| +|.+.+++|.. ....+++.
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~-----------~~~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~ 68 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKK-----------KKKKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKF 68 (106)
T ss_pred CcCEEEECCCChhhccccchhh-----------cccccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHH
Confidence 5999999999986543211100 00114567889999999888 99998887652 34566777
Q ss_pred HHHC
Q psy2395 544 LFKY 547 (570)
Q Consensus 544 l~~~ 547 (570)
+...
T Consensus 69 l~~~ 72 (106)
T PF07669_consen 69 LLNN 72 (106)
T ss_pred HhcC
Confidence 6543
No 294
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=96.33 E-value=0.034 Score=52.17 Aligned_cols=138 Identities=17% Similarity=0.186 Sum_probs=80.4
Q ss_pred ECCcccHHHHHHHHhcCCCcEEEEEeCCH--HHHHH---HHHHHHhhcccCCCCEEE-EEccccccccc---CCCceeEE
Q psy2395 404 MGTGSGAIAIAIAIYSKNKIEIIATDISK--FALKI---AKKNAKKKLTKYNIPIKF-IKSNWYNNLQN---YKKLFNII 474 (570)
Q Consensus 404 lGcGtG~i~l~la~~~~~~~~V~gvDis~--~al~~---A~~n~~~~~~~~~~~v~~-~~~D~~~~l~~---~~~~fD~I 474 (570)
+|=|.=.++.+|++......+++|+-.+. +..+. +..|+... ....+.+ ..-|+.+.... ...+||.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L---~~~g~~V~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEEL---RELGVTVLHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHH---hhcCCccccCCCCCcccccccccCCcCCEE
Confidence 44455556677777654345666655444 33332 33555542 1112332 33455442222 23789999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCH---HHHHHHHHHCCCee
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQS---NLVRKLLFKYGFSD 551 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~l~~ll~~~Gf~~ 551 (570)
+.|-|......... ...++ ..-.++..|+..+..+|+++|.+.+.+...+. =.+.++..+.||..
T Consensus 80 iFNFPH~G~~~~~~-~~~i~-----------~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l 147 (166)
T PF10354_consen 80 IFNFPHVGGGSEDG-KRNIR-----------LNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVL 147 (166)
T ss_pred EEeCCCCCCCccch-hHHHH-----------HHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEE
Confidence 99998764110000 00000 01246789999999999999999997755443 35778888899988
Q ss_pred EEEEe
Q psy2395 552 IKSWR 556 (570)
Q Consensus 552 i~~~~ 556 (570)
++..+
T Consensus 148 ~~~~~ 152 (166)
T PF10354_consen 148 VRKVP 152 (166)
T ss_pred EEEec
Confidence 76653
No 295
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=96.32 E-value=0.018 Score=51.28 Aligned_cols=94 Identities=14% Similarity=0.187 Sum_probs=62.9
Q ss_pred CCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 451 IPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 451 ~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
..+++..||+.+.++.....||+|+.++ |.|..... + .-..+++.+.++++|||.+.
T Consensus 31 v~L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPe-----------l----------Ws~e~~~~l~~~~~~~~~l~- 87 (124)
T PF05430_consen 31 VTLTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPE-----------L----------WSEELFKKLARLSKPGGTLA- 87 (124)
T ss_dssp EEEEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGG-----------G----------SSHHHHHHHHHHEEEEEEEE-
T ss_pred EEEEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcc-----------c----------CCHHHHHHHHHHhCCCcEEE-
Confidence 3578899999887776668999999985 44433221 0 01578888999999999875
Q ss_pred EEcCCCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEEeC
Q psy2395 531 EHGYNQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGKIS 570 (570)
Q Consensus 531 ~~~~~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~~ 570 (570)
.+.....+++.|.++||.+ +..+-..++.-+++|.++
T Consensus 88 --Tys~a~~Vr~~L~~aGF~v-~~~~g~g~Kr~~~~a~~~ 124 (124)
T PF05430_consen 88 --TYSSAGAVRRALQQAGFEV-EKVPGFGRKREMLRAVKP 124 (124)
T ss_dssp --ES--BHHHHHHHHHCTEEE-EEEE-STTSSEEEEEEC-
T ss_pred --EeechHHHHHHHHHcCCEE-EEcCCCCCcchheEEEcC
Confidence 3455677999999999985 566677777777777653
No 296
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.22 E-value=0.0094 Score=57.47 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=62.2
Q ss_pred CCCEEEEECCcccHHHHHHHHh---cCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc-----C-
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIY---SKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN-----Y- 467 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~---~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~-----~- 467 (570)
++..|+++|.=.|.-++.+|.. ....++|+||||+............ ....+|++++||..+.... .
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~h----p~~~rI~~i~Gds~d~~~~~~v~~~~ 107 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESH----PMSPRITFIQGDSIDPEIVDQVRELA 107 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG--------TTEEEEES-SSSTHHHHTSGSS-
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhc----cccCceEEEECCCCCHHHHHHHHHhh
Confidence 5789999999999888877643 2236899999997655433322211 1345799999998653211 0
Q ss_pred -CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE--------------
Q psy2395 468 -KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-------------- 532 (570)
Q Consensus 468 -~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-------------- 532 (570)
.....+|+.+-- .-.+.....++....++++|++++++-
T Consensus 108 ~~~~~vlVilDs~--------------------------H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~ 161 (206)
T PF04989_consen 108 SPPHPVLVILDSS--------------------------HTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDR 161 (206)
T ss_dssp ---SSEEEEESS------------------------------SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS-----
T ss_pred ccCCceEEEECCC--------------------------ccHHHHHHHHHHhCccCCCCCEEEEEecccccccccccccc
Confidence 122335554321 111233455666778999999998741
Q ss_pred ----cCCCHHHHHHHHHHCC
Q psy2395 533 ----GYNQSNLVRKLLFKYG 548 (570)
Q Consensus 533 ----~~~~~~~l~~ll~~~G 548 (570)
|.+....+.++|.++.
T Consensus 162 ~w~~g~~p~~av~~fL~~~~ 181 (206)
T PF04989_consen 162 PWGPGNNPKTAVKEFLAEHP 181 (206)
T ss_dssp --------HHHHHHHHHTTT
T ss_pred chhhhhHHHHHHHHHHHHCC
Confidence 1234567888888765
No 297
>KOG1269|consensus
Probab=96.07 E-value=0.016 Score=61.09 Aligned_cols=105 Identities=19% Similarity=0.276 Sum_probs=74.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++..++|+|||.|.....++... .+.++|+|+++..+..+......... .....++.+|+... +..+..||.+-
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l--~~k~~~~~~~~~~~-~fedn~fd~v~ 183 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYL--DNKCNFVVADFGKM-PFEDNTFDGVR 183 (364)
T ss_pred cccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHh--hhhcceehhhhhcC-CCCccccCcEE
Confidence 356689999999999999998765 57899999999888887765554322 22344577887654 33357899988
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
+. ....|.| ....+++++++.++|||.++.
T Consensus 184 ~l-------------d~~~~~~------------~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 184 FL-------------EVVCHAP------------DLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred EE-------------eecccCC------------cHHHHHHHHhcccCCCceEEe
Confidence 72 1111222 346778888889999999875
No 298
>KOG1253|consensus
Probab=96.03 E-value=0.0058 Score=65.29 Aligned_cols=106 Identities=19% Similarity=0.234 Sum_probs=82.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---cCCCcee
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---NYKKLFN 472 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---~~~~~fD 472 (570)
.++.+|||.-|+||.-++..|++.+...+|++.|.++.+++..++|++.|+ ....+....+|+....- .....||
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~--v~~ive~~~~DA~~lM~~~~~~~~~FD 185 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG--VEDIVEPHHSDANVLMYEHPMVAKFFD 185 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC--chhhcccccchHHHHHHhccccccccc
Confidence 457799999999999999999998877789999999999999999999752 23347777788743221 1126899
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
+|=.+| |... ..|+..+.+.++.||.+.+..
T Consensus 186 vIDLDP-yGs~----------------------------s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 186 VIDLDP-YGSP----------------------------SPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred eEecCC-CCCc----------------------------cHHHHHHHHHhhcCCEEEEEe
Confidence 999875 4422 356777777899999998854
No 299
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.01 E-value=0.015 Score=62.64 Aligned_cols=137 Identities=12% Similarity=0.220 Sum_probs=86.6
Q ss_pred EEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCC
Q psy2395 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPP 479 (570)
Q Consensus 400 ~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPP 479 (570)
.|+|..+|.|.++.+|...--=-.+|+-+ ..+..+... ...| .--..-|+.+.++..+..||+|-++--
T Consensus 368 NVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vI----ydRG------LIG~yhDWCE~fsTYPRTYDLlHA~~l 436 (506)
T PF03141_consen 368 NVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVI----YDRG------LIGVYHDWCEAFSTYPRTYDLLHADGL 436 (506)
T ss_pred eeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhh----hhcc------cchhccchhhccCCCCcchhheehhhh
Confidence 69999999999999997431000122222 122222211 1111 112344677777666789999999754
Q ss_pred CCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEEEEecC-
Q psy2395 480 YIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKSWRDL- 558 (570)
Q Consensus 480 y~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~~~D~- 558 (570)
|... ...-.+..++-++-|.|+|+|++++--...-..+++.++....|.......+-
T Consensus 437 fs~~----------------------~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g 494 (506)
T PF03141_consen 437 FSLY----------------------KDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDG 494 (506)
T ss_pred hhhh----------------------cccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCC
Confidence 3211 11123578888999999999999987666778889999999888764332222
Q ss_pred -CCCceEEEEEe
Q psy2395 559 -SGIERVTQGKI 569 (570)
Q Consensus 559 -~g~~R~~~~~~ 569 (570)
.+.++++++++
T Consensus 495 ~~~~EkiL~~~K 506 (506)
T PF03141_consen 495 PDGPEKILICQK 506 (506)
T ss_pred CCCCceEEEEEC
Confidence 34788888864
No 300
>KOG2793|consensus
Probab=95.99 E-value=0.091 Score=52.24 Aligned_cols=112 Identities=26% Similarity=0.373 Sum_probs=66.4
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcc---cCCCCEEEEEcccccccc--cCCCc-
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT---KYNIPIKFIKSNWYNNLQ--NYKKL- 470 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~---~~~~~v~~~~~D~~~~l~--~~~~~- 470 (570)
...+||++|+|||..++.+|... .++|.-.|+.. .+...+.|...+.. ..+..+.+..-++-+... .....
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~ 162 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNP 162 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh--cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCc
Confidence 35689999999999999998866 47898888744 44444444333211 122244444444433221 11133
Q ss_pred eeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC
Q psy2395 471 FNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ 536 (570)
Q Consensus 471 fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 536 (570)
||+|++-=++ |+|+ .+..++..+..+|..+|.+++.+.-..
T Consensus 163 ~DlilasDvv--------------y~~~-----------~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 163 FDLILASDVV--------------YEEE-----------SFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred ccEEEEeeee--------------ecCC-----------cchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 8999873222 2221 235666677778888887777665443
No 301
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.91 E-value=0.011 Score=60.64 Aligned_cols=78 Identities=24% Similarity=0.201 Sum_probs=56.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc---cccC--CC
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN---LQNY--KK 469 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~---l~~~--~~ 469 (570)
..++..++|.-.|.|..+..++...++ ++++|+|.||.+++.|++++.. ...++.++.+++.+. +... ..
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~----~~~r~~~~~~~F~~l~~~l~~~~~~~ 92 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKK----FDDRFIFIHGNFSNLDEYLKELNGIN 92 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCC----CCTTEEEEES-GGGHHHHHHHTTTTS
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhh----ccceEEEEeccHHHHHHHHHHccCCC
Confidence 356779999999999999999998875 9999999999999999988764 466899999998552 1211 25
Q ss_pred ceeEEEEC
Q psy2395 470 LFNIIVAN 477 (570)
Q Consensus 470 ~fD~Iv~N 477 (570)
++|.|+.+
T Consensus 93 ~~dgiL~D 100 (310)
T PF01795_consen 93 KVDGILFD 100 (310)
T ss_dssp -EEEEEEE
T ss_pred ccCEEEEc
Confidence 79999984
No 302
>KOG2798|consensus
Probab=95.89 E-value=0.082 Score=53.64 Aligned_cols=37 Identities=30% Similarity=0.412 Sum_probs=29.6
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHH
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKI 437 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~ 437 (570)
+.+||-.|||.|.++..||..+. .+-|-|.|--|+-.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~ 187 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLIC 187 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHHH
Confidence 56899999999999999998864 46666777766543
No 303
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.48 E-value=0.19 Score=52.17 Aligned_cols=142 Identities=18% Similarity=0.149 Sum_probs=82.0
Q ss_pred EEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCC
Q psy2395 401 LLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPY 480 (570)
Q Consensus 401 VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy 480 (570)
|+|++||.|.+++.+...+ ---+.++|+++.+++.-+.|... .++.+|+.+.....-..+|+++.-||-
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~~---------~~~~~Di~~~~~~~~~~~dvl~gg~PC 69 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFGN---------KVPFGDITKISPSDIPDFDILLGGFPC 69 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCCC---------CCCccChhhhhhhhCCCcCEEEecCCC
Confidence 6899999999999987654 23467899999999998888641 345677755332112468999999985
Q ss_pred CCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--------CCHHHHHHHHHHCCCeeE
Q psy2395 481 IPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------NQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 481 ~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------~~~~~l~~ll~~~Gf~~i 552 (570)
-..+...... . ..+++. ..+..+++.+ +.++|. ++++|--. .....+...|+..||...
T Consensus 70 q~fS~ag~~~-~-~~d~r~---------~L~~~~~r~i-~~~~P~-~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~ 136 (315)
T TIGR00675 70 QPFSIAGKRK-G-FEDTRG---------TLFFEIVRIL-KEKKPK-FFLLENVKGLVSHDKGRTFKVIIETLEELGYKVY 136 (315)
T ss_pred cccchhcccC-C-CCCchh---------hHHHHHHHHH-hhcCCC-EEEeeccHHHHhcccchHHHHHHHHHHhCCCEEE
Confidence 4322110000 0 001111 1233444333 346775 44554211 124556777888999763
Q ss_pred EEEe---c---CCCCceEEE
Q psy2395 553 KSWR---D---LSGIERVTQ 566 (570)
Q Consensus 553 ~~~~---D---~~g~~R~~~ 566 (570)
...- | -+.++|+++
T Consensus 137 ~~~l~a~dyGvPQ~R~R~f~ 156 (315)
T TIGR00675 137 YKVLNAKDFGVPQNRERIYI 156 (315)
T ss_pred EEEEcHHHCCCCCCccEEEE
Confidence 3222 2 256677754
No 304
>KOG1331|consensus
Probab=95.42 E-value=0.025 Score=56.75 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=76.4
Q ss_pred cCCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCC
Q psy2395 373 TSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIP 452 (570)
Q Consensus 373 ~~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~ 452 (570)
++..+.|-|....+++.. +.+..++|+|||.|-....- | .+.++|.|++...+..|++.- .
T Consensus 26 s~tr~~~Wp~v~qfl~~~-----~~gsv~~d~gCGngky~~~~----p-~~~~ig~D~c~~l~~~ak~~~---------~ 86 (293)
T KOG1331|consen 26 SATRAAPWPMVRQFLDSQ-----PTGSVGLDVGCGNGKYLGVN----P-LCLIIGCDLCTGLLGGAKRSG---------G 86 (293)
T ss_pred cccccCccHHHHHHHhcc-----CCcceeeecccCCcccCcCC----C-cceeeecchhhhhccccccCC---------C
Confidence 555666666666555443 34789999999999654321 3 468999999999988876421 1
Q ss_pred EEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 453 IKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 453 v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
.....+|+.+ ++....+||.+++-.- ..+-.--.--..++++..+.|+|||...+.
T Consensus 87 ~~~~~ad~l~-~p~~~~s~d~~lsiav----------------------ihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 87 DNVCRADALK-LPFREESFDAALSIAV----------------------IHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred ceeehhhhhc-CCCCCCccccchhhhh----------------------hhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 2577788866 4444578999887211 000000112257889999999999987653
No 305
>KOG2078|consensus
Probab=95.41 E-value=0.012 Score=61.79 Aligned_cols=89 Identities=17% Similarity=0.174 Sum_probs=66.0
Q ss_pred eeeeecCCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy2395 368 LVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT 447 (570)
Q Consensus 368 ~~~~v~~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~ 447 (570)
..+.++..++-+|-.++. +.+.. ..+++..|.|++||.|-+++.+++.+ ++|++-|.+|+++++.+.|+..|-
T Consensus 223 Fk~DfskVYWnsRL~~Eh--erlsg-~fk~gevv~D~FaGvGPfa~Pa~kK~---crV~aNDLNpesik~Lk~ni~lNk- 295 (495)
T KOG2078|consen 223 FKFDFSKVYWNSRLSHEH--ERLSG-LFKPGEVVCDVFAGVGPFALPAAKKG---CRVYANDLNPESIKWLKANIKLNK- 295 (495)
T ss_pred EEEecceEEeeccchhHH--HHHhh-ccCCcchhhhhhcCcCccccchhhcC---cEEEecCCCHHHHHHHHHhccccc-
Confidence 445556667777644432 11222 35678899999999999999999654 899999999999999999998752
Q ss_pred cCCC-CEEEEEccccccc
Q psy2395 448 KYNI-PIKFIKSNWYNNL 464 (570)
Q Consensus 448 ~~~~-~v~~~~~D~~~~l 464 (570)
... ++..+..|+...+
T Consensus 296 -v~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 296 -VDPSAIEIFNMDAKDFL 312 (495)
T ss_pred -cchhheeeecccHHHHh
Confidence 222 4888888886655
No 306
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.34 E-value=0.19 Score=47.72 Aligned_cols=136 Identities=13% Similarity=0.066 Sum_probs=80.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHH----HHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCce
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKF----ALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLF 471 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~----al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f 471 (570)
+++.+|+|+-.|.|+++..++....+...|+++=-.+. .....+.+..... ....+++.+-.+..... .....
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e-~~~aN~e~~~~~~~A~~--~pq~~ 123 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE-PVYANVEVIGKPLVALG--APQKL 123 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh-hhhhhhhhhCCcccccC--CCCcc
Confidence 57889999999999999999876655668887643322 1111222221100 01113455555554433 23578
Q ss_pred eEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc-C--------------CC
Q psy2395 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG-Y--------------NQ 536 (570)
Q Consensus 472 D~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~-~--------------~~ 536 (570)
|+++.|--|+... ...+. -....++...+++.|||||.+.++-. . -.
T Consensus 124 d~~~~~~~yhdmh--------------~k~i~----~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~ 185 (238)
T COG4798 124 DLVPTAQNYHDMH--------------NKNIH----PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRID 185 (238)
T ss_pred cccccchhhhhhh--------------ccccC----cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccC
Confidence 8888776665321 11111 12346788888899999999877431 1 12
Q ss_pred HHHHHHHHHHCCCeeE
Q psy2395 537 SNLVRKLLFKYGFSDI 552 (570)
Q Consensus 537 ~~~l~~ll~~~Gf~~i 552 (570)
...+.......||...
T Consensus 186 ~a~V~a~veaaGFkl~ 201 (238)
T COG4798 186 PAVVIAEVEAAGFKLE 201 (238)
T ss_pred hHHHHHHHHhhcceee
Confidence 3556777778898754
No 307
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.32 E-value=0.023 Score=55.26 Aligned_cols=77 Identities=19% Similarity=0.266 Sum_probs=42.8
Q ss_pred eeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHH--HHHHHHHHCC
Q psy2395 471 FNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSN--LVRKLLFKYG 548 (570)
Q Consensus 471 fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~--~l~~ll~~~G 548 (570)
.|+|+++|||....... ....+.. .....+-++.+..++.++.++|+|||.+++-++..... ....++...|
T Consensus 1 VdliitDPPY~~~~~~~---~~~~~~~---~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g 74 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYN---NYFDYGD---NKNHEEYLEWMEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFG 74 (231)
T ss_dssp EEEEEE---TSSSCS--------CSCH---CCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHT
T ss_pred CCEEEECCCCCCCCCcc---hhhhccC---CCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhh
Confidence 59999999998654310 0000000 00011224567889999999999999999988876655 3444455557
Q ss_pred -CeeEE
Q psy2395 549 -FSDIK 553 (570)
Q Consensus 549 -f~~i~ 553 (570)
|....
T Consensus 75 ~~~~~~ 80 (231)
T PF01555_consen 75 GFFLRN 80 (231)
T ss_dssp T-EEEE
T ss_pred hhheec
Confidence 76543
No 308
>PHA01634 hypothetical protein
Probab=95.31 E-value=0.082 Score=46.63 Aligned_cols=47 Identities=9% Similarity=0.005 Sum_probs=42.8
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKK 445 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~ 445 (570)
.+.+|+|+|++.|.-++.++..+ ...|++++.++...+..++|++.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhh
Confidence 57899999999999999999887 469999999999999999999863
No 309
>KOG4058|consensus
Probab=95.26 E-value=0.05 Score=49.16 Aligned_cols=77 Identities=16% Similarity=0.234 Sum_probs=58.5
Q ss_pred HHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc
Q psy2395 384 ELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN 462 (570)
Q Consensus 384 ~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~ 462 (570)
-.-++.++..+. .+..+.+|+|+|-|.+-+..++.+ -...+|+|++|-.+.+++-.+.+.+ ...+..|..-|+++
T Consensus 58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g--~~k~trf~RkdlwK 133 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAG--CAKSTRFRRKDLWK 133 (199)
T ss_pred HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHh--cccchhhhhhhhhh
Confidence 333444555544 345799999999999999999876 2468999999999999998887653 45568888888876
Q ss_pred cc
Q psy2395 463 NL 464 (570)
Q Consensus 463 ~l 464 (570)
..
T Consensus 134 ~d 135 (199)
T KOG4058|consen 134 VD 135 (199)
T ss_pred cc
Confidence 43
No 310
>KOG2352|consensus
Probab=95.25 E-value=0.18 Score=54.25 Aligned_cols=110 Identities=16% Similarity=0.259 Sum_probs=73.9
Q ss_pred CEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECC
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANP 478 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NP 478 (570)
.+++-+|||.--+...+-+-+ -..|+.+|+|+-+++.....-.. ......+...|+.. +...+++||+|+.-+
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~~----~~~~~~~~~~d~~~-l~fedESFdiVIdkG 122 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNAK----ERPEMQMVEMDMDQ-LVFEDESFDIVIDKG 122 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhcccc----CCcceEEEEecchh-ccCCCcceeEEEecC
Confidence 389999999999988887665 35799999999999877543211 23347889999854 444568999999843
Q ss_pred CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 479 PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 479 Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
-... .+++..++.. .......+.++.+.|++||+.+.
T Consensus 123 tlDa-----------l~~de~a~~~----~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 123 TLDA-----------LFEDEDALLN----TAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred cccc-----------ccCCchhhhh----hHHhhHHHhhHHHHhccCCEEEE
Confidence 2210 0111111110 02445677888999999999754
No 311
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.84 E-value=0.046 Score=56.51 Aligned_cols=131 Identities=15% Similarity=0.083 Sum_probs=77.0
Q ss_pred EEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCC-ceeEEEECC
Q psy2395 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKK-LFNIIVANP 478 (570)
Q Consensus 400 ~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~-~fD~Iv~NP 478 (570)
+++|++||.|.+.+.+...+ --.+.++|+++.+++.-+.|.. ....+|+.+.....-. .+|+++.-|
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~----------~~~~~Di~~~~~~~l~~~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP----------EVICGDITEIDPSDLPKDVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT----------EEEESHGGGCHHHHHHHT-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc----------ccccccccccccccccccceEEEecc
Confidence 78999999999999998766 3468999999999999888863 5788888664321102 599999999
Q ss_pred CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-cC-C------CHHHHHHHHHHCCCe
Q psy2395 479 PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-GY-N------QSNLVRKLLFKYGFS 550 (570)
Q Consensus 479 Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~~-~------~~~~l~~ll~~~Gf~ 550 (570)
|--+.+.... . ....+. .+ .++..+++.+. .++|.- +++|- +. . ....+.+.|.+.||.
T Consensus 70 PCQ~fS~ag~---~------~~~~d~-r~-~L~~~~~~~v~-~~~Pk~-~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~ 136 (335)
T PF00145_consen 70 PCQGFSIAGK---R------KGFDDP-RN-SLFFEFLRIVK-ELKPKY-FLLENVPGLLSSKNGEVFKEILEELEELGYN 136 (335)
T ss_dssp --TTTSTTST---H------HCCCCH-TT-SHHHHHHHHHH-HHS-SE-EEEEEEGGGGTGGGHHHHHHHHHHHHHTTEE
T ss_pred CCceEecccc---c------cccccc-cc-hhhHHHHHHHh-hccceE-EEecccceeecccccccccccccccccccee
Confidence 8543221100 0 000000 11 23445555443 467854 55543 21 1 146677788889987
Q ss_pred eEEEE
Q psy2395 551 DIKSW 555 (570)
Q Consensus 551 ~i~~~ 555 (570)
+....
T Consensus 137 v~~~v 141 (335)
T PF00145_consen 137 VQWRV 141 (335)
T ss_dssp EEEEE
T ss_pred ehhcc
Confidence 64433
No 312
>KOG1562|consensus
Probab=94.83 E-value=0.06 Score=54.19 Aligned_cols=114 Identities=17% Similarity=0.236 Sum_probs=83.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccC-CCCEEEEEcccccccccC-CCceeE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKY-NIPIKFIKSNWYNNLQNY-KKLFNI 473 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~-~~~v~~~~~D~~~~l~~~-~~~fD~ 473 (570)
.+++++|-+|-|-|......+++ +.-..+.-+|++...++..++.......+. +.++.+..||.+..+... .++||+
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 46779999999999998888766 445679999999999999998877642222 347999999988766544 479999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
|+.+- +++ + -|-. --+.+.++..+.+.||++|+++..
T Consensus 199 ii~ds-----sdp-----v---gpa~--------~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 199 IITDS-----SDP-----V---GPAC--------ALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred EEEec-----CCc-----c---chHH--------HHHHHHHHHHHHHhhCCCcEEEEe
Confidence 99842 110 0 0101 124567888899999999998764
No 313
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.73 E-value=0.18 Score=52.43 Aligned_cols=90 Identities=22% Similarity=0.277 Sum_probs=62.2
Q ss_pred CCCCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEE---cccccccccCCCc
Q psy2395 395 FEKKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIK---SNWYNNLQNYKKL 470 (570)
Q Consensus 395 ~~~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~---~D~~~~l~~~~~~ 470 (570)
..++.+|+=.|+| .|.+++.+|+.. +++|+++|.+++-++.|++--.. .++. .|..+.+. +.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~lGAd---------~~i~~~~~~~~~~~~---~~ 229 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKLGAD---------HVINSSDSDALEAVK---EI 229 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHhCCc---------EEEEcCCchhhHHhH---hh
Confidence 3567888888877 667888888866 48999999999999999876331 2333 23322222 34
Q ss_pred eeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 471 FNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 471 fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
||+|+..-| ..-+..+.+.|+++|.+++
T Consensus 230 ~d~ii~tv~--------------------------------~~~~~~~l~~l~~~G~~v~ 257 (339)
T COG1064 230 ADAIIDTVG--------------------------------PATLEPSLKALRRGGTLVL 257 (339)
T ss_pred CcEEEECCC--------------------------------hhhHHHHHHHHhcCCEEEE
Confidence 999998432 1234456668999999876
No 314
>KOG1596|consensus
Probab=94.32 E-value=0.2 Score=48.97 Aligned_cols=108 Identities=17% Similarity=0.123 Sum_probs=72.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc--CCCcee
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN--YKKLFN 472 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~--~~~~fD 472 (570)
.+++.+||=||+++|..-...+.-..+..-||+||.|+.+=...-.-++ ...+|-.+.-|+..+-.. .-.-.|
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk-----kRtNiiPIiEDArhP~KYRmlVgmVD 228 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK-----KRTNIIPIIEDARHPAKYRMLVGMVD 228 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh-----ccCCceeeeccCCCchheeeeeeeEE
Confidence 3678999999999998877766555456789999999865443322222 233577777888553221 114689
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
+|+++-|-- +..+.+.-++..+|++||.+++.+..
T Consensus 229 vIFaDvaqp---------------------------dq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 229 VIFADVAQP---------------------------DQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred EEeccCCCc---------------------------hhhhhhhhhhhhhhccCCeEEEEEec
Confidence 999974311 12244555788899999999986643
No 315
>PRK10458 DNA cytosine methylase; Provisional
Probab=94.29 E-value=0.23 Score=54.31 Aligned_cols=78 Identities=13% Similarity=0.159 Sum_probs=53.6
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc------------
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ------------ 465 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~------------ 465 (570)
..+++|++||.|.+.+.+-..+ .-.|.++|+++.+.+.-+.|... ......+.+|+.+...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG--~~~v~a~Eid~~A~~TY~~N~~~-----~p~~~~~~~DI~~i~~~~~~~~~~~~~~ 160 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIG--GQCVFTSEWNKHAVRTYKANWYC-----DPATHRFNEDIRDITLSHKEGVSDEEAA 160 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcC--CEEEEEEechHHHHHHHHHHcCC-----CCccceeccChhhCccccccccchhhhh
Confidence 4699999999999999987654 34678999999999888888531 1123344555543211
Q ss_pred ----cCCCceeEEEECCCCCC
Q psy2395 466 ----NYKKLFNIIVANPPYIP 482 (570)
Q Consensus 466 ----~~~~~fD~Iv~NPPy~~ 482 (570)
.....+|+++.-||--+
T Consensus 161 ~~~~~~~p~~DvL~gGpPCQ~ 181 (467)
T PRK10458 161 EHIRQHIPDHDVLLAGFPCQP 181 (467)
T ss_pred hhhhccCCCCCEEEEcCCCCc
Confidence 00135899999998544
No 316
>KOG1501|consensus
Probab=93.92 E-value=0.1 Score=55.08 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=45.1
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFI 456 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~ 456 (570)
..-|||+|+|||.+++.+++.+. -.|+|+|.-..|.+.|++-..+|+ ...+++++
T Consensus 67 kv~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~kng--~SdkI~vI 121 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHKNG--MSDKINVI 121 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhcCC--Cccceeee
Confidence 34699999999999999998874 479999999999999999998875 23344444
No 317
>KOG1099|consensus
Probab=93.86 E-value=0.25 Score=48.07 Aligned_cols=131 Identities=11% Similarity=0.173 Sum_probs=76.0
Q ss_pred CCEEEEECCcccHHHHHHHHhcCC--------CcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc------
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKN--------KIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN------ 463 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~--------~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~------ 463 (570)
-.+++|+|+-.|.++..|++..-. ...|++||+.+-+ .-..|..+++|+...
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------------PI~GV~qlq~DIT~~stae~I 107 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------------PIEGVIQLQGDITSASTAEAI 107 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------------ccCceEEeecccCCHhHHHHH
Confidence 458999999999999999876411 1239999997643 122377889998653
Q ss_pred cccCC-CceeEEEECC-CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE-EEcCCCHHHH
Q psy2395 464 LQNYK-KLFNIIVANP-PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI-EHGYNQSNLV 540 (570)
Q Consensus 464 l~~~~-~~fD~Iv~NP-Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~l 540 (570)
+..+. ++.|+|||+. |=+.. .|.+.+-+ ....+...+.-+..+|+|||.|+- ++.......+
T Consensus 108 i~hfggekAdlVvcDGAPDvTG--lHd~DEy~-------------Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslL 172 (294)
T KOG1099|consen 108 IEHFGGEKADLVVCDGAPDVTG--LHDLDEYV-------------QAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLL 172 (294)
T ss_pred HHHhCCCCccEEEeCCCCCccc--cccHHHHH-------------HHHHHHHHHHHHhheecCCCeeehhhhccCchHHH
Confidence 22223 5899999973 21100 00000000 012344566667789999999976 3334444434
Q ss_pred HHHHHHCCCeeEEEEecC
Q psy2395 541 RKLLFKYGFSDIKSWRDL 558 (570)
Q Consensus 541 ~~ll~~~Gf~~i~~~~D~ 558 (570)
..-|+.. |..+.+.+-.
T Consensus 173 ysql~~f-f~kv~~~KPr 189 (294)
T KOG1099|consen 173 YSQLRKF-FKKVTCAKPR 189 (294)
T ss_pred HHHHHHH-hhceeeecCC
Confidence 3333332 4444444433
No 318
>KOG0822|consensus
Probab=93.68 E-value=0.13 Score=55.50 Aligned_cols=104 Identities=19% Similarity=0.251 Sum_probs=70.3
Q ss_pred CCEEEEECCcccHHHHHH---HHhcCCCcEEEEEeCCHHHHHHHHH-HHHhhcccCCCCEEEEEcccccccccCCCceeE
Q psy2395 398 KIKLLEMGTGSGAIAIAI---AIYSKNKIEIIATDISKFALKIAKK-NAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~l---a~~~~~~~~V~gvDis~~al~~A~~-n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
...|+-+|+|-|-+.-.. |.......++++||.+|.|+-..+. |... -+.+|+++.+|+.+.. .+..+.|+
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~----W~~~Vtii~~DMR~w~-ap~eq~DI 442 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFEC----WDNRVTIISSDMRKWN-APREQADI 442 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhh----hcCeeEEEeccccccC-Cchhhccc
Confidence 447899999999885443 3444446889999999999876543 4433 3557999999996643 32478999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEE
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLL 529 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~ 529 (570)
+|+- |.|.-+.-+.-.+.+..+.++|||+|+.+
T Consensus 443 ~VSE-----------------------LLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 443 IVSE-----------------------LLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred hHHH-----------------------hhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 9982 11111111222567778888999998664
No 319
>KOG1227|consensus
Probab=93.64 E-value=0.044 Score=55.17 Aligned_cols=74 Identities=8% Similarity=0.104 Sum_probs=53.8
Q ss_pred CCCEEEEECCcccHHHH-HHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAIAI-AIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l-~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.+..|+|+.+|-|++++ .+...+ ...|+|+|.+|.+++..++|++.|. ...+..+..||-... .+....|-|.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~ag--Ak~V~A~EwNp~svEaLrR~~~~N~--V~~r~~i~~gd~R~~--~~~~~AdrVn 267 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAG--AKTVFACEWNPWSVEALRRNAEANN--VMDRCRITEGDNRNP--KPRLRADRVN 267 (351)
T ss_pred ccchhhhhhcccceEEeehhhccC--ccEEEEEecCHHHHHHHHHHHHhcc--hHHHHHhhhcccccc--Cccccchhee
Confidence 45789999999999999 555544 5789999999999999999999862 122455566665432 2235666665
Q ss_pred E
Q psy2395 476 A 476 (570)
Q Consensus 476 ~ 476 (570)
.
T Consensus 268 L 268 (351)
T KOG1227|consen 268 L 268 (351)
T ss_pred e
Confidence 5
No 320
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.63 E-value=0.15 Score=53.34 Aligned_cols=147 Identities=18% Similarity=0.178 Sum_probs=87.9
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC-CC-ceeEEE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY-KK-LFNIIV 475 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~-~~-~fD~Iv 475 (570)
..+++|++||.|.+.+.+...+ ---+.++|+++.+++.-+.|... ..+...|+.+..... .. .+|+|+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~--------~~~~~~di~~~~~~~~~~~~~Dvli 72 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPH--------GDIILGDIKELDGEALRKSDVDVLI 72 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCC--------CceeechHhhcChhhccccCCCEEE
Confidence 4589999999999998888765 24678999999999998888752 346667775433221 12 799999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-------CCHHHHHHHHHHCC
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-------NQSNLVRKLLFKYG 548 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-------~~~~~l~~ll~~~G 548 (570)
.-||--+.+..- .....-+|+..| +..+++ +...++| -++++|--. ...+.+.+.|++.|
T Consensus 73 gGpPCQ~FS~aG--~r~~~~D~R~~L---------~~~~~r-~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~G 139 (328)
T COG0270 73 GGPPCQDFSIAG--KRRGYDDPRGSL---------FLEFIR-LIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELG 139 (328)
T ss_pred eCCCCcchhhcC--cccCCcCcccee---------eHHHHH-HHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcC
Confidence 999854322110 000011222222 122222 3336777 555664211 24567888899999
Q ss_pred CeeE-EEE--ecC---CCCceEEEE
Q psy2395 549 FSDI-KSW--RDL---SGIERVTQG 567 (570)
Q Consensus 549 f~~i-~~~--~D~---~g~~R~~~~ 567 (570)
|..- .+. .|+ +.+.|+++-
T Consensus 140 Y~~~~~ilna~dyGvPQ~ReRvfii 164 (328)
T COG0270 140 YGVEFNILNAADYGVPQSRERVFIV 164 (328)
T ss_pred CcchHheeeHHhcCCCCCccEEEEE
Confidence 9621 122 222 556676653
No 321
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=92.33 E-value=0.15 Score=43.75 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=26.3
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCC
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDIS 431 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis 431 (570)
+....+|+|||+|.+.-.|...+ ..-+|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EG---y~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEG---YPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCC---CCccccccc
Confidence 45689999999999998888765 567899964
No 322
>KOG3350|consensus
Probab=92.14 E-value=3.6 Score=38.58 Aligned_cols=166 Identities=14% Similarity=0.126 Sum_probs=88.6
Q ss_pred hchHHHHHHHHHHHHHHhcC----CCceeecCcccccCeeeeecCCccccchhHHHHHHHHHhhcCCCCCEEEEECCccc
Q psy2395 334 KLHKQEINILNKLIQRRILG----EPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSG 409 (570)
Q Consensus 334 ~l~~~~~~~~~~~~~~r~~~----~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG 409 (570)
.|+...++.++.+...+.+. .+..++.+ -.+..+..+.- +..+..++.+++..+.. ...+.+|.-+.|-|=
T Consensus 11 ~LsA~aLAaL~eF~aEq~k~~e~~~~~~~~i~---~~~eDwQlsqf-wy~~eta~~La~e~v~~-s~e~~rIacvS~Psl 85 (217)
T KOG3350|consen 11 QLSADALAALNEFLAEQQKRIEEEENQSDIIE---KIGEDWQLSQF-WYSDETARKLAAERVEA-SGEGSRIACVSCPSL 85 (217)
T ss_pred ccCHHHHHHHHHHHHHHHhhhhccCchhhhhh---hcccchhhhhh-hcCHHHHHHHHHHHHhh-cccCceEEEEeCchH
Confidence 46777788888887776543 22222222 11222222221 11223445555555443 235567888888775
Q ss_pred HHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC---CCceeEEEECCCCCCCCCc
Q psy2395 410 AIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY---KKLFNIIVANPPYIPKGDI 486 (570)
Q Consensus 410 ~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~---~~~fD~Iv~NPPy~~~~~~ 486 (570)
++-.-.-....+.-+|+-.+.+...-.. + -+|+.-|...++..+ ...||+||++|||...+
T Consensus 86 y~y~k~re~~~~~~~v~lfEfDkRFe~y------------g--~eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~e-- 149 (217)
T KOG3350|consen 86 YVYQKKREIEIPHDQVYLFEFDKRFELY------------G--TEFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEE-- 149 (217)
T ss_pred HhhhhhhhccCCceeEEEEEehhhHHhc------------c--ceeEEeccCCCCCCHHHHHhcccEEEeCCccccch--
Confidence 5221111111125688998887654222 2 345656654443322 26899999999998532
Q ss_pred ccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHH
Q psy2395 487 HLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKL 543 (570)
Q Consensus 487 ~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~l 543 (570)
.+.+--..+..+++++-.+++.+|.--.+.+.++
T Consensus 150 -----------------------Cl~Kts~tik~L~r~~~kvilCtGeimee~~s~~ 183 (217)
T KOG3350|consen 150 -----------------------CLAKTSETIKRLQRNQKKVILCTGEIMEEWASAL 183 (217)
T ss_pred -----------------------hhhhhHHHHHHHhcCCceEEEechhHhHHHHHHH
Confidence 2234444555667777778777765444433333
No 323
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=91.93 E-value=4 Score=40.42 Aligned_cols=138 Identities=10% Similarity=0.116 Sum_probs=82.8
Q ss_pred CCccccchhHHHHHHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcC---CCcEEEEEeCCHHHHHHHHHHHHhhcccC
Q psy2395 374 SDVLIPRPETELLVDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSK---NKIEIIATDISKFALKIAKKNAKKKLTKY 449 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~---~~~~V~gvDis~~al~~A~~n~~~~~~~~ 449 (570)
|.++-.|.++..+...+.+.. ...+...+|+|+|+..-+..|...+. ...+.+.+|+|...+....+-+... -.
T Consensus 54 PEYYpTRtEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~--y~ 131 (321)
T COG4301 54 PEYYPTRTEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILRE--YP 131 (321)
T ss_pred ccccCchhHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHh--CC
Confidence 555655667766655544331 23467899999999877766654432 1368999999999887655544332 14
Q ss_pred CCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEE
Q psy2395 450 NIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLL 529 (570)
Q Consensus 450 ~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~ 529 (570)
+..+.-+++|....+..+.+.---+++=| .+.. -.+.| +.-..|+..+...|.||-++.
T Consensus 132 ~l~v~~l~~~~~~~La~~~~~~~Rl~~fl----GStl------GN~tp-----------~e~~~Fl~~l~~a~~pGd~~L 190 (321)
T COG4301 132 GLEVNALCGDYELALAELPRGGRRLFVFL----GSTL------GNLTP-----------GECAVFLTQLRGALRPGDYFL 190 (321)
T ss_pred CCeEeehhhhHHHHHhcccCCCeEEEEEe----cccc------cCCCh-----------HHHHHHHHHHHhcCCCcceEE
Confidence 55678888998665543322112222200 0000 00111 223578888999999999999
Q ss_pred EEEcC
Q psy2395 530 IEHGY 534 (570)
Q Consensus 530 ~~~~~ 534 (570)
+.+..
T Consensus 191 lGvDl 195 (321)
T COG4301 191 LGVDL 195 (321)
T ss_pred Eeccc
Confidence 86644
No 324
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=91.66 E-value=3.3 Score=40.98 Aligned_cols=116 Identities=14% Similarity=0.195 Sum_probs=80.8
Q ss_pred EEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---cCCCceeEEEECC
Q psy2395 402 LEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---NYKKLFNIIVANP 478 (570)
Q Consensus 402 LDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---~~~~~fD~Iv~NP 478 (570)
|...|||=-++..+.+. .-++.++|+.|+=....+.|+. .+.++.+.++|-+..+. .+.++=-+|+.+|
T Consensus 93 l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~-----~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDP 164 (279)
T COG2961 93 LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFA-----GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDP 164 (279)
T ss_pred cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhC-----CCcceEEEecCcHHHHhhhCCCCCcceEEEeCC
Confidence 89999999988888754 3589999999999999999987 36689999999876432 2235678999999
Q ss_pred CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccc--cCeEEEEEEcCCCHHHH---HHHHHHCCCe
Q psy2395 479 PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV--KNGLLLIEHGYNQSNLV---RKLLFKYGFS 550 (570)
Q Consensus 479 Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~~~l---~~ll~~~Gf~ 550 (570)
||-..+ .|..+++...+.++ ++|...+=.|--+...+ .+-++..|..
T Consensus 165 PfE~~~-------------------------eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~~~~i~ 216 (279)
T COG2961 165 PFELKD-------------------------EYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRALEALGIR 216 (279)
T ss_pred Cccccc-------------------------HHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHHhhcCcc
Confidence 996433 34555555444444 56776665555444444 4445556664
No 325
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=90.95 E-value=1.7 Score=43.51 Aligned_cols=136 Identities=15% Similarity=0.175 Sum_probs=72.8
Q ss_pred CCCEEEEECCcccHHHHHHHHhc----CCCcEEEEEeCCH--------------------------HHHHHHHHHHHhhc
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS----KNKIEIIATDISK--------------------------FALKIAKKNAKKKL 446 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~----~~~~~V~gvDis~--------------------------~al~~A~~n~~~~~ 446 (570)
-+..|+|+||--|..++.++... ..+.++++.|-=. ..++..+.|+...+
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 35689999999998776654321 1245788888411 13444444544322
Q ss_pred ccCCCCEEEEEcccccccccC-CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccC
Q psy2395 447 TKYNIPIKFIKSNWYNNLQNY-KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKN 525 (570)
Q Consensus 447 ~~~~~~v~~~~~D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkpg 525 (570)
. ...++.++.|.+.+.++.. ..++-++..+- |-.+.....++.++..|.||
T Consensus 154 l-~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~---------------------------DlYesT~~aLe~lyprl~~G 205 (248)
T PF05711_consen 154 L-LDDNVRFVKGWFPDTLPDAPIERIALLHLDC---------------------------DLYESTKDALEFLYPRLSPG 205 (248)
T ss_dssp T-SSTTEEEEES-HHHHCCC-TT--EEEEEE------------------------------SHHHHHHHHHHHGGGEEEE
T ss_pred C-CcccEEEECCcchhhhccCCCccEEEEEEec---------------------------cchHHHHHHHHHHHhhcCCC
Confidence 1 2347999999997766532 13344433321 22345678899999999999
Q ss_pred eEEEEEE-cC-CCHHHHHHHHHHCCCeeEEEEecCCC
Q psy2395 526 GLLLIEH-GY-NQSNLVRKLLFKYGFSDIKSWRDLSG 560 (570)
Q Consensus 526 G~l~~~~-~~-~~~~~l~~ll~~~Gf~~i~~~~D~~g 560 (570)
|++++.- +. .....+.+++.+.|...--..-|..|
T Consensus 206 GiIi~DDY~~~gcr~AvdeF~~~~gi~~~l~~id~~~ 242 (248)
T PF05711_consen 206 GIIIFDDYGHPGCRKAVDEFRAEHGITDPLHPIDWTG 242 (248)
T ss_dssp EEEEESSTTTHHHHHHHHHHHHHTT--S--EE-SSS-
T ss_pred eEEEEeCCCChHHHHHHHHHHHHcCCCCccEEecCce
Confidence 9998732 22 22456777888888765323334443
No 326
>PTZ00357 methyltransferase; Provisional
Probab=89.89 E-value=1.2 Score=50.04 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=49.6
Q ss_pred CEEEEECCcccHHHHH---HHHhcCCCcEEEEEeCCHHHHHHHHHHHH---hhcc---cCCCCEEEEEccccccccc---
Q psy2395 399 IKLLEMGTGSGAIAIA---IAIYSKNKIEIIATDISKFALKIAKKNAK---KKLT---KYNIPIKFIKSNWYNNLQN--- 466 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~---la~~~~~~~~V~gvDis~~al~~A~~n~~---~~~~---~~~~~v~~~~~D~~~~l~~--- 466 (570)
..|+-+|+|-|-+--. .++...-..+|++||.||.++.....+.. .... ..+..|+++.+|+.+....
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 3689999999987433 33333335789999999776655544432 1110 0144699999999664221
Q ss_pred -------CCCceeEEEE
Q psy2395 467 -------YKKLFNIIVA 476 (570)
Q Consensus 467 -------~~~~fD~Iv~ 476 (570)
.-+++|+||+
T Consensus 782 ~s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS 798 (1072)
T ss_pred ccccccccccccceehH
Confidence 0137899998
No 327
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=89.81 E-value=0.62 Score=47.61 Aligned_cols=99 Identities=16% Similarity=0.173 Sum_probs=62.8
Q ss_pred EEEEEcccccccccC-CCceeEEEECCCCCCCCCcccCCCCccccccccccc---cCCChHH-HHHHHHHHhhccccCeE
Q psy2395 453 IKFIKSNWYNNLQNY-KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTD---YSNGLSS-IKEIVKNASKYLVKNGL 527 (570)
Q Consensus 453 v~~~~~D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~---~~~gl~~-~~~~l~~~~~~LkpgG~ 527 (570)
..++++|+++.+... +.++|+|+++|||..............+.. +..+ ...-..+ ....+.+..+.|+++|.
T Consensus 17 ~~i~~~d~~~~l~~~~~~svDli~tdppy~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~rvl~~~~~ 94 (302)
T COG0863 17 SKIYKGDCLEILKSLPENSVDLIFTDPPYNNVKAGRKLGFLKRWLD--AWDGWDSRGIYLKFILLQWLAEQKRVLKPGGS 94 (302)
T ss_pred hheecchHHHHHhhccccceeEEEcCCCccccccccccccccccch--hhhhhhhHHHHHHHHHHHHHHHhhheecCCCE
Confidence 568888887655432 359999999999976533110000000000 0000 0001123 46778888999999999
Q ss_pred EEEEEcCCCHHHHHHHHHHCCCeeEE
Q psy2395 528 LLIEHGYNQSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 528 l~~~~~~~~~~~l~~ll~~~Gf~~i~ 553 (570)
+++..+......+...+++.||....
T Consensus 95 ~~v~~~~~~~~~~~~~~~~~gf~~~~ 120 (302)
T COG0863 95 LYVIDPFSNLARIEDIAKKLGFEILG 120 (302)
T ss_pred EEEECCchhhhHHHHHHHhCCCeEee
Confidence 99988887888888888889987643
No 328
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=89.75 E-value=2 Score=47.50 Aligned_cols=42 Identities=24% Similarity=0.180 Sum_probs=35.7
Q ss_pred CCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 397 KKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 397 ~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
++.+|+=+||| .|..++..|+.. ++.|+++|.+++.++.++.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 57899999999 577777778776 4689999999999998876
No 329
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=89.74 E-value=0.78 Score=47.41 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=62.4
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC--CCceeEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY--KKLFNII 474 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fD~I 474 (570)
.+.+|||+|.|.|.-+.++-..+|.-..++-++.||..-++...-.... ......+..+|+....... ...|+++
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv---~t~~td~r~s~vt~dRl~lp~ad~ytl~ 189 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV---STEKTDWRASDVTEDRLSLPAADLYTLA 189 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc---ccccCCCCCCccchhccCCCccceeehh
Confidence 4568999999999887777666664446777888886655554333311 1112233444443221111 2457766
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChH-HHHHHHHHHhhccccCeEEEEEE
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLS-SIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~-~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
+.---.. ++|.+ -+...++..+..+.|||.++++-
T Consensus 190 i~~~eLl-----------------------~d~~ek~i~~~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 190 IVLDELL-----------------------PDGNEKPIQVNIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred hhhhhhc-----------------------cccCcchHHHHHHHHHHhccCCCeEEEEe
Confidence 5510000 01111 13457888889999999987744
No 330
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=89.57 E-value=0.84 Score=45.46 Aligned_cols=117 Identities=19% Similarity=0.265 Sum_probs=64.3
Q ss_pred EEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---cCCCceeEEEECC
Q psy2395 402 LEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---NYKKLFNIIVANP 478 (570)
Q Consensus 402 LDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---~~~~~fD~Iv~NP 478 (570)
+....||=.++..+.+. .-+.+.+|+.|.-.+..+.|+.. ..++.+...|.++.+. .+..+=-+|+.+|
T Consensus 62 l~~YPGSP~ia~~llR~---qDrl~l~ELHp~d~~~L~~~~~~-----~~~v~v~~~DG~~~l~allPP~~rRglVLIDP 133 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE---QDRLVLFELHPQDFEALKKNFRR-----DRRVRVHHRDGYEGLKALLPPPERRGLVLIDP 133 (245)
T ss_dssp --EEE-HHHHHHHHS-T---TSEEEEE--SHHHHHHHTTS--T-----TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE--
T ss_pred cCcCCCCHHHHHHhCCc---cceEEEEecCchHHHHHHHHhcc-----CCccEEEeCchhhhhhhhCCCCCCCeEEEECC
Confidence 77888888888877754 35899999999999999888863 4579999999987532 2235667999999
Q ss_pred CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccc--cCeEEEEEEcCCC---HHHHHHHHHHCCCee
Q psy2395 479 PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV--KNGLLLIEHGYNQ---SNLVRKLLFKYGFSD 551 (570)
Q Consensus 479 Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~---~~~l~~ll~~~Gf~~ 551 (570)
||-... .|.+++..+.+.++ +.|.+++=.|.-. ...+.+.+.+.|...
T Consensus 134 pYE~~~-------------------------dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~~~~~~~ 186 (245)
T PF04378_consen 134 PYEQKD-------------------------DYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALKALGIKK 186 (245)
T ss_dssp ---STT-------------------------HHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHH-SSE
T ss_pred CCCCch-------------------------HHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHHhcCCCC
Confidence 996433 34455544444444 5777665444333 344555555556543
No 331
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=89.47 E-value=3.5 Score=43.13 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=39.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHhc----C---CCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYS----K---NKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~----~---~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
+.+..++++|.|+|.++.-+++.. | ...+++-||.|++..+.-+++++.
T Consensus 76 p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 76 PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 345689999999999988776543 1 257899999999999988888874
No 332
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=88.55 E-value=7.2 Score=38.95 Aligned_cols=118 Identities=13% Similarity=0.169 Sum_probs=62.6
Q ss_pred CCCCEEEEECCcccH----HHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCce
Q psy2395 396 EKKIKLLEMGTGSGA----IAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLF 471 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~----i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f 471 (570)
+.+.+||-+|+|+-- -+..|.+.+|.++.++-.|+.+-. ...-..+.+|.....+ +.+|
T Consensus 60 P~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v---------------SDa~~~~~~Dc~t~~~--~~k~ 122 (299)
T PF06460_consen 60 PHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV---------------SDADQSIVGDCRTYMP--PDKF 122 (299)
T ss_dssp -TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B----------------SSSEEEES-GGGEEE--SS-E
T ss_pred ccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc---------------cccCCceeccccccCC--CCcc
Confidence 467899999999632 244555667778888888886532 1123467788866544 3799
Q ss_pred eEEEECCCCCCCCCcccCCCCccccccccccccC--CChHHHHHHHHHHhhccccCeEEEEEEc-CCCHHHHHHHHHH
Q psy2395 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYS--NGLSSIKEIVKNASKYLVKNGLLLIEHG-YNQSNLVRKLLFK 546 (570)
Q Consensus 472 D~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~--~gl~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~l~~ll~~ 546 (570)
|+||++. | +++.--..++ ..-.++.-+..-+...|+-||.+++-+. .....++.+++..
T Consensus 123 DlIiSDm-Y---------------d~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~Lyel~~~ 184 (299)
T PF06460_consen 123 DLIISDM-Y---------------DGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSWNAQLYELMGY 184 (299)
T ss_dssp EEEEE--------------------TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS--HHHHHHHTT
T ss_pred cEEEEec-c---------------cccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccccHHHHHHHhh
Confidence 9999974 2 1111111111 1123455566667789999999998554 3446777777754
No 333
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=87.66 E-value=2.5 Score=40.24 Aligned_cols=125 Identities=18% Similarity=0.215 Sum_probs=73.1
Q ss_pred CCCEEEEECCcccHHHHHHHH---hcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAI---YSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~---~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
++..|+++|.--|.-++..|. .+.+..+|+++|||-..+.-+... ..+|.|+.|+-.++... .+.+.
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--------~p~i~f~egss~dpai~--eqi~~ 138 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--------VPDILFIEGSSTDPAIA--EQIRR 138 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--------CCCeEEEeCCCCCHHHH--HHHHH
Confidence 567999999988887777664 233357999999998776544322 23599999987653211 11111
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE---------------cCCCHH
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH---------------GYNQSN 538 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~---------------~~~~~~ 538 (570)
.-.-+| +..++-......+..-.-++....+|.-|-+++++- +.+..+
T Consensus 139 ~~~~y~-----------------kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP~~ 201 (237)
T COG3510 139 LKNEYP-----------------KIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGGGPYE 201 (237)
T ss_pred HhcCCC-----------------cEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCCcccchhcCCChHH
Confidence 101010 111111112223444455666667788888888743 223356
Q ss_pred HHHHHHHHCC
Q psy2395 539 LVRKLLFKYG 548 (570)
Q Consensus 539 ~l~~ll~~~G 548 (570)
.+..++++.+
T Consensus 202 AVe~ylr~~p 211 (237)
T COG3510 202 AVEAYLREFP 211 (237)
T ss_pred HHHHHHHhCC
Confidence 7888888765
No 334
>KOG2352|consensus
Probab=87.28 E-value=1 Score=48.62 Aligned_cols=111 Identities=15% Similarity=0.129 Sum_probs=74.4
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc------CCCc
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN------YKKL 470 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~------~~~~ 470 (570)
.+..+|-+|-|+|.+...+....+ ...+++|+++|.+++.|+.+.... ...+..+...|....+.. .+..
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~---q~~r~~V~i~dGl~~~~~~~k~~~~~~~ 370 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFM---QSDRNKVHIADGLDFLQRTAKSQQEDIC 370 (482)
T ss_pred ccCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchh---hhhhhhhhHhhchHHHHHHhhccccccC
Confidence 456788999999999988877765 589999999999999999997642 222344555555443221 2357
Q ss_pred eeEEEEC---CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 471 FNIIVAN---PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 471 fD~Iv~N---PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
||+++.+ ++ . ......+++ -.-..++..+...|.|.|.+++
T Consensus 371 ~dvl~~dvds~d-~--~g~~~pp~~----------------fva~~~l~~~k~~l~p~g~f~i 414 (482)
T KOG2352|consen 371 PDVLMVDVDSKD-S--HGMQCPPPA----------------FVAQVALQPVKMILPPRGMFII 414 (482)
T ss_pred CcEEEEECCCCC-c--ccCcCCchH----------------HHHHHHHHHHhhccCccceEEE
Confidence 9999984 22 1 000001111 1235788888999999999987
No 335
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=86.97 E-value=0.21 Score=43.06 Aligned_cols=58 Identities=19% Similarity=0.339 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhccccCeEEEEEEcCCC----------------------HHHHHHHHHH--CCCeeEEEEec----CCC
Q psy2395 509 SSIKEIVKNASKYLVKNGLLLIEHGYNQ----------------------SNLVRKLLFK--YGFSDIKSWRD----LSG 560 (570)
Q Consensus 509 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------------------~~~l~~ll~~--~Gf~~i~~~~D----~~g 560 (570)
+-+..+++.++..|+|||.+++|--+.. .+.+..+|.+ .||..++...- ..|
T Consensus 21 ~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~~~evGF~~~e~~~~~~~~~~g 100 (110)
T PF06859_consen 21 EGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLLEPEVGFSSVEELGVPENSSKG 100 (110)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHTSTTT---EEEEE---------
T ss_pred HHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHHhcccceEEEEEcccCCCCCCC
Confidence 4458999999999999999999863321 2345666665 58887664443 245
Q ss_pred CceEEE
Q psy2395 561 IERVTQ 566 (570)
Q Consensus 561 ~~R~~~ 566 (570)
.+|-+.
T Consensus 101 F~RpI~ 106 (110)
T PF06859_consen 101 FDRPIY 106 (110)
T ss_dssp ----EE
T ss_pred CCCcEE
Confidence 666543
No 336
>KOG2651|consensus
Probab=86.93 E-value=1.9 Score=45.18 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=36.7
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
+-..|+|+|.|-|+++..++-.+ +..|+|||-|..+.+.|++-
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHHH
Confidence 44589999999999999999776 68999999998887777654
No 337
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=86.92 E-value=11 Score=40.40 Aligned_cols=140 Identities=14% Similarity=0.161 Sum_probs=74.7
Q ss_pred cccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhc---cc---CCCCEEEEE-cccccccccCCCceeEEEECCC
Q psy2395 407 GSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKL---TK---YNIPIKFIK-SNWYNNLQNYKKLFNIIVANPP 479 (570)
Q Consensus 407 GtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~---~~---~~~~v~~~~-~D~~~~l~~~~~~fD~Iv~NPP 479 (570)
|.|+++..+|..+..+.+|+++|++++.++.++....... +. ......+.. .|..+.. ...|+|+..-|
T Consensus 7 GlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~----~~ad~vii~Vp 82 (388)
T PRK15057 7 GTGYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAY----RDADYVIIATP 82 (388)
T ss_pred CCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhh----cCCCEEEEeCC
Confidence 6666666665443335789999999999988765321100 00 000111211 1111111 34688887643
Q ss_pred CCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE--EcCCCHHHHHHHHHHCC--CeeE---
Q psy2395 480 YIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE--HGYNQSNLVRKLLFKYG--FSDI--- 552 (570)
Q Consensus 480 y~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~--~~~~~~~~l~~ll~~~G--f~~i--- 552 (570)
--... ..+.-.+..+...++.+.+ +++|..++.. +++...+.+.+.+.+.| |..-
T Consensus 83 t~~~~-----------------k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~~PE~l~ 144 (388)
T PRK15057 83 TDYDP-----------------KTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIFSPEFLR 144 (388)
T ss_pred CCCcc-----------------CCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEECccccc
Confidence 21000 0011123456677777776 6777666553 45677788877776644 2221
Q ss_pred --EEEecCCCCceEEEEE
Q psy2395 553 --KSWRDLSGIERVTQGK 568 (570)
Q Consensus 553 --~~~~D~~g~~R~~~~~ 568 (570)
....|+...+|+++|-
T Consensus 145 ~G~a~~d~~~p~rvv~G~ 162 (388)
T PRK15057 145 EGKALYDNLHPSRIVIGE 162 (388)
T ss_pred CCcccccccCCCEEEEEc
Confidence 3455666777988873
No 338
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=86.36 E-value=1.7 Score=38.61 Aligned_cols=66 Identities=24% Similarity=0.331 Sum_probs=35.1
Q ss_pred CCCEEEEECCcccHH-HHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAI-AIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i-~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
+..+|+++|-|.=.- +..|... +..|+++|+++. ++. ..+.++..|++++....-...|+|.
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~---G~dV~~tDi~~~-------~a~-------~g~~~v~DDif~P~l~iY~~a~lIY 75 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER---GFDVIATDINPR-------KAP-------EGVNFVVDDIFNPNLEIYEGADLIY 75 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH---S-EEEEE-SS-S------------------STTEE---SSS--HHHHTTEEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHc---CCcEEEEECccc-------ccc-------cCcceeeecccCCCHHHhcCCcEEE
Confidence 345999999996544 4445544 379999999998 222 1266899999885432225799999
Q ss_pred E-CCC
Q psy2395 476 A-NPP 479 (570)
Q Consensus 476 ~-NPP 479 (570)
+ +||
T Consensus 76 SiRPP 80 (127)
T PF03686_consen 76 SIRPP 80 (127)
T ss_dssp EES--
T ss_pred EeCCC
Confidence 8 665
No 339
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=86.02 E-value=0.88 Score=40.03 Aligned_cols=85 Identities=20% Similarity=0.264 Sum_probs=55.8
Q ss_pred cccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEE--cccccccccC--CCceeEEEECCCCCC
Q psy2395 407 GSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIK--SNWYNNLQNY--KKLFNIIVANPPYIP 482 (570)
Q Consensus 407 GtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~--~D~~~~l~~~--~~~fD~Iv~NPPy~~ 482 (570)
|.|.+++.+|+.. +++|+++|.++.-++.+++.- ....+-. .|+.+.+... ...+|+|+-..+.
T Consensus 1 ~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~~~~~G--------a~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~-- 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAM--GAKVIATDRSEEKLELAKELG--------ADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS-- 68 (130)
T ss_dssp HHHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHTT--------ESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS--
T ss_pred ChHHHHHHHHHHc--CCEEEEEECCHHHHHHHHhhc--------ccccccccccccccccccccccccceEEEEecCc--
Confidence 5688999999887 489999999999998887532 1111111 1222222111 1479999874320
Q ss_pred CCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 483 KGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 483 ~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
...++.+..+|+++|.+++.-
T Consensus 69 -----------------------------~~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 69 -----------------------------GDTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp -----------------------------HHHHHHHHHHEEEEEEEEEES
T ss_pred -----------------------------HHHHHHHHHHhccCCEEEEEE
Confidence 356777788999999998743
No 340
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=85.95 E-value=2.6 Score=42.92 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=46.5
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
..+....+.....++..|||..+|+|..+++....+ ...+|+|+++..++.+.+.+..
T Consensus 209 ~~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~---r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 209 LALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLG---RRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred HHHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcC---CceEEEecCHHHHHHHHHHHHh
Confidence 444455544444678899999999999998877654 5799999999999999998875
No 341
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=84.91 E-value=1.4 Score=43.92 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=34.9
Q ss_pred HHHHHHhhcCC-CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy2395 386 LVDLIVKKTFE-KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAK 439 (570)
Q Consensus 386 l~~~~~~~~~~-~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~ 439 (570)
++.++...++. +..+++|+.||+|.++..+... ..+|+.-|+++..+...+
T Consensus 8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~---~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQP---GKRVIINDINPDLINFWK 59 (260)
T ss_dssp GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC------SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHcCCCCCCEEEEEecchhHHHHHhccc---ccceeeeechHHHHHHHH
Confidence 44556665554 6789999999999999988652 468999999997766555
No 342
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=84.91 E-value=5.9 Score=34.06 Aligned_cols=106 Identities=13% Similarity=0.095 Sum_probs=62.6
Q ss_pred CcccHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc--ccCC-CceeEEEECCCCC
Q psy2395 406 TGSGAIAIAIAIYSKNK-IEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL--QNYK-KLFNIIVANPPYI 481 (570)
Q Consensus 406 cGtG~i~l~la~~~~~~-~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l--~~~~-~~fD~Iv~NPPy~ 481 (570)
||.|.++..+++..... ..|+.+|.+++.++.++.. + +.++.||..+.. .... ...|.|++-.+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~--~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------G--VEVIYGDATDPEVLERAGIEKADAVVILTD-- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------T--SEEEES-TTSHHHHHHTTGGCESEEEEESS--
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------c--cccccccchhhhHHhhcCccccCEEEEccC--
Confidence 67778888887654323 4899999999997776532 2 679999997642 2111 57888877321
Q ss_pred CCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeE
Q psy2395 482 PKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 482 ~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i 552 (570)
-+.....+....+-+.|...++...... ...+.|++.|...+
T Consensus 72 --------------------------~d~~n~~~~~~~r~~~~~~~ii~~~~~~---~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 72 --------------------------DDEENLLIALLARELNPDIRIIARVNDP---ENAELLRQAGADHV 113 (116)
T ss_dssp --------------------------SHHHHHHHHHHHHHHTTTSEEEEEESSH---HHHHHHHHTT-SEE
T ss_pred --------------------------CHHHHHHHHHHHHHHCCCCeEEEEECCH---HHHHHHHHCCcCEE
Confidence 0111223333445567777777665432 23556677777644
No 343
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=84.16 E-value=3.1 Score=47.59 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCccccCCH--HHHHHHHHHHhhhhhHHH-HHHHHHHHHH
Q psy2395 4 LMLSKLEKFSKRLKELDFLLTQKEVHNNI--KDYCKKVREHSFLYPIVE-LYNNYKKINE 60 (570)
Q Consensus 4 ~~~~~l~~~~~r~~~l~~~l~~p~~w~d~--~~~~~l~ke~~~L~~~v~-~~~~~~~~~~ 60 (570)
.+...+++++++.++|+..|.+|++++|. +++.++.+++..++..++ .|.+|..+.+
T Consensus 567 ~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~ 626 (638)
T PRK10636 567 RLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQE 626 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999988664 378888888877775443 3444444443
No 344
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=83.81 E-value=4.3 Score=38.26 Aligned_cols=74 Identities=20% Similarity=0.347 Sum_probs=43.0
Q ss_pred eeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHH-HHHHHHCCC
Q psy2395 471 FNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLV-RKLLFKYGF 549 (570)
Q Consensus 471 fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l-~~ll~~~Gf 549 (570)
||+|++|||+........-.....|.. -..+.+..+ -+.+++.++|.+++=+........ .++|..-||
T Consensus 1 fdvI~~DPPW~~~~~~~~~~~~~~Y~t--------m~~~~i~~L--pv~~l~~~~~~lflWvTn~~~~~~~~~l~~~WGf 70 (176)
T PF05063_consen 1 FDVIYADPPWPNKSASRKGGAEAHYPT--------MSLDEIKSL--PVPQLAAPGALLFLWVTNSQLPEAKLELFPAWGF 70 (176)
T ss_pred CCEEEEeCCCCCcCcccccccccCCCc--------cCHHHHHhC--CHHHhCCCCcEEEEEeccchhhHHHHHHHHhCCC
Confidence 899999999865432111001111111 011122222 255677888898885656665666 899999999
Q ss_pred eeEEE
Q psy2395 550 SDIKS 554 (570)
Q Consensus 550 ~~i~~ 554 (570)
+.+..
T Consensus 71 ~~~~~ 75 (176)
T PF05063_consen 71 EYVTE 75 (176)
T ss_pred EEEEE
Confidence 87653
No 345
>KOG2360|consensus
Probab=83.72 E-value=2.5 Score=44.36 Aligned_cols=85 Identities=13% Similarity=0.099 Sum_probs=63.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCC-CceeE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYK-KLFNI 473 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~-~~fD~ 473 (570)
++++.+|+|.||-.|.-+.-+|....+..+++|+|.++...+..+.-+...+ ...+....+|+.....+++ ...-.
T Consensus 211 p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag---~~~~~~~~~df~~t~~~~~~~~v~~ 287 (413)
T KOG2360|consen 211 PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAG---VSIVESVEGDFLNTATPEKFRDVTY 287 (413)
T ss_pred CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcC---CCccccccccccCCCCcccccceeE
Confidence 3567899999999999999888766657899999999999998888777532 2236677899876421111 45778
Q ss_pred EEECCCCCC
Q psy2395 474 IVANPPYIP 482 (570)
Q Consensus 474 Iv~NPPy~~ 482 (570)
|+++|+-..
T Consensus 288 iL~DpscSg 296 (413)
T KOG2360|consen 288 ILVDPSCSG 296 (413)
T ss_pred EEeCCCCCC
Confidence 999998643
No 346
>KOG3924|consensus
Probab=82.66 E-value=4.7 Score=42.57 Aligned_cols=84 Identities=15% Similarity=0.204 Sum_probs=58.3
Q ss_pred cCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhc------ccCCCCEEEEEccccccc--c
Q psy2395 394 TFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKL------TKYNIPIKFIKSNWYNNL--Q 465 (570)
Q Consensus 394 ~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~------~~~~~~v~~~~~D~~~~l--~ 465 (570)
...+.+...|+|.|.|.....+|..+. ...-+|+++.+..-+.|..|...+- ......+..+++++...- .
T Consensus 189 ~~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~ 267 (419)
T KOG3924|consen 189 KLGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVT 267 (419)
T ss_pred ccCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHH
Confidence 346778999999999999888886653 4567899998888777776654320 011224888999886532 1
Q ss_pred cCCCceeEEEECC
Q psy2395 466 NYKKLFNIIVANP 478 (570)
Q Consensus 466 ~~~~~fD~Iv~NP 478 (570)
......++|++|-
T Consensus 268 eI~~eatvi~vNN 280 (419)
T KOG3924|consen 268 EIQTEATVIFVNN 280 (419)
T ss_pred HHhhcceEEEEec
Confidence 2235689999863
No 347
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=82.50 E-value=5.3 Score=42.09 Aligned_cols=45 Identities=29% Similarity=0.324 Sum_probs=37.0
Q ss_pred CCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHH
Q psy2395 397 KKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNA 442 (570)
Q Consensus 397 ~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~ 442 (570)
++.+|+=+||| .|.+++.+++... ..+|+++|.++.-++.|++..
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~ 213 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAG 213 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhC
Confidence 34489999999 5777777887764 589999999999999998743
No 348
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=82.47 E-value=8.9 Score=39.96 Aligned_cols=43 Identities=23% Similarity=0.394 Sum_probs=31.4
Q ss_pred CCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 397 KKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 397 ~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
++.+||=.||| .|.+++.+|+... ..+|+++|.+++.++.|++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH
Confidence 56788888875 4555666676652 2379999999999888865
No 349
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=81.74 E-value=4.3 Score=43.22 Aligned_cols=45 Identities=22% Similarity=0.193 Sum_probs=36.9
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 396 EKKIKLLEMGTGS-GAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 396 ~~~~~VLDlGcGt-G~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
.++.+||..|||+ |.+++.+|+... ..+|+++|.+++.++.+++.
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc
Confidence 4577999999988 888888988763 23699999999998888764
No 350
>COG4889 Predicted helicase [General function prediction only]
Probab=80.75 E-value=6 Score=45.84 Aligned_cols=186 Identities=21% Similarity=0.246 Sum_probs=0.0
Q ss_pred ccccchhHHHHHHHHHhhcC--------CCCCEEEEECCcccHHHHHHHHhc--------CCCcEEEEEeCCHHHHHHHH
Q psy2395 376 VLIPRPETELLVDLIVKKTF--------EKKIKLLEMGTGSGAIAIAIAIYS--------KNKIEIIATDISKFALKIAK 439 (570)
Q Consensus 376 ~~~pr~~t~~l~~~~~~~~~--------~~~~~VLDlGcGtG~i~l~la~~~--------~~~~~V~gvDis~~al~~A~ 439 (570)
+|+|-..-..++...-..+. ..+..|||..+|||.+...+.... .-.....+.||---+.-+|.
T Consensus 816 VyTPiEVVDFIlra~d~vlkkHFg~~l~d~~vhilDpFtGTGtFi~RlL~alIs~edl~rKf~~eLhA~eIvLLsYYIAa 895 (1518)
T COG4889 816 VYTPIEVVDFILRATDDVLKKHFGTDLNDQSVHILDPFTGTGTFIVRLLSALISDEDLKRKFQKELHAFEIVLLSYYIAA 895 (1518)
T ss_pred eecchhHhhHHHHhcchHHHHHhCCCcccCCeeeecCCCCccHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHHHH
Q ss_pred HHHHhhcccCCCCEEEEEcccccc----------------------cccCCCceeEEEECCCCCCCCCcc-cCCCCcccc
Q psy2395 440 KNAKKKLTKYNIPIKFIKSNWYNN----------------------LQNYKKLFNIIVANPPYIPKGDIH-LNKGDLRFE 496 (570)
Q Consensus 440 ~n~~~~~~~~~~~v~~~~~D~~~~----------------------l~~~~~~fD~Iv~NPPy~~~~~~~-~~~~~~~~e 496 (570)
-|+............-+.+=++.. .....-+.-+|+.||||....... .....+.|.
T Consensus 896 iNIe~t~~~~~gd~~~F~giaLtDtf~~~Eed~~d~~~f~~n~erlkrq~~ipI~VIiGNPPYS~gqks~ndnn~nl~yp 975 (1518)
T COG4889 896 INIEQTAQNRDGDLKNFKGIALTDTFDYLEEDTLDGDIFGYNNERLKRQKEIPIRVIIGNPPYSAGQKSENDNNQNLSYP 975 (1518)
T ss_pred hhHHHHhhhhcCCcccCCCceecchhhhhccccccccccCccHHHHHhhcCCceEEEeCCCCCcccccCcCccccccccc
Q ss_pred ccccccccCCCh-----------HHHHHHHHHHhhccccCeEEEEEEcC-----CCHHHHHHHHHHCCCeeEEEEecCCC
Q psy2395 497 PINALTDYSNGL-----------SSIKEIVKNASKYLVKNGLLLIEHGY-----NQSNLVRKLLFKYGFSDIKSWRDLSG 560 (570)
Q Consensus 497 p~~al~~~~~gl-----------~~~~~~l~~~~~~LkpgG~l~~~~~~-----~~~~~l~~ll~~~Gf~~i~~~~D~~g 560 (570)
-.-...-..-+- +.|-+.++-+.+.++.+|.+-|++.. ..+..++.-+.+ .|+.+.++ .+-|
T Consensus 976 kLd~rv~~sy~k~STA~nknsl~Dsyira~RwasDri~d~GVigFV~NggfIDgnsaDG~R~sla~-dfs~iYvl-NLrG 1053 (1518)
T COG4889 976 KLDKRVYESYGKNSTATNKNSLRDSYIRAIRWASDRIKDNGVIGFVVNGGFIDGNSADGFRKSLAQ-DFSHIYVL-NLRG 1053 (1518)
T ss_pred hHHHHHHHHHhccchhhcccchHHHHHHHHHHHhhhcccCceEEEEecCceecCccchHHHHHHHH-HhhhheEE-eccC
Q ss_pred Cce
Q psy2395 561 IER 563 (570)
Q Consensus 561 ~~R 563 (570)
..|
T Consensus 1054 n~R 1056 (1518)
T COG4889 1054 NQR 1056 (1518)
T ss_pred Ccc
No 351
>PRK10884 SH3 domain-containing protein; Provisional
Probab=80.40 E-value=16 Score=35.56 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=21.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcCcc
Q psy2395 2 KHLMLSKLEKFSKRLKELDFLLTQKE 27 (570)
Q Consensus 2 ~~~~~~~l~~~~~r~~~l~~~l~~p~ 27 (570)
.|++...++++++++++++.++.+-+
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999998888743
No 352
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=79.34 E-value=22 Score=38.58 Aligned_cols=144 Identities=16% Similarity=0.223 Sum_probs=75.3
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhc------ccCCCCEEEEEcccccccccCCCce
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKL------TKYNIPIKFIKSNWYNNLQNYKKLF 471 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~------~~~~~~v~~~~~D~~~~l~~~~~~f 471 (570)
+.+|-=+ |.|++++.+|..+..+.+|+|+|+++..++..++...... +....+..+ ..+. +.. ...
T Consensus 6 ~mkI~vI--GlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~-t~~~-~~~----~~a 77 (425)
T PRK15182 6 EVKIAII--GLGYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKF-TSEI-EKI----KEC 77 (425)
T ss_pred CCeEEEE--CcCcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeE-EeCH-HHH----cCC
Confidence 3456555 6677888777665446799999999999887662221000 000001111 1221 111 357
Q ss_pred eEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE--cCCCHHH-HHHHHHH-C
Q psy2395 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH--GYNQSNL-VRKLLFK-Y 547 (570)
Q Consensus 472 D~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~-l~~ll~~-~ 547 (570)
|+++..-|--... .+...+..+....+.+...|++|..++... ++...+. +..++.+ .
T Consensus 78 dvvii~Vptp~~~------------------~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~ 139 (425)
T PRK15182 78 NFYIITVPTPINT------------------YKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMS 139 (425)
T ss_pred CEEEEEcCCCCCC------------------CCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhcc
Confidence 8888753311000 011123344555667778898887776643 4444543 4455554 2
Q ss_pred CCeeE---------------EEEecCCCCceEEEE
Q psy2395 548 GFSDI---------------KSWRDLSGIERVTQG 567 (570)
Q Consensus 548 Gf~~i---------------~~~~D~~g~~R~~~~ 567 (570)
|.... ....++...+|+++|
T Consensus 140 g~~~~~~~~~~~~PE~v~~G~a~~~~~~~~riv~G 174 (425)
T PRK15182 140 GMTFNQDFYVGYSPERINPGDKKHRLTNIKKITSG 174 (425)
T ss_pred CCCcCCCeeEeeCCCcCCCCcccccccCCCeEEEC
Confidence 43211 124566777788776
No 353
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=79.32 E-value=5.2 Score=37.11 Aligned_cols=130 Identities=15% Similarity=0.224 Sum_probs=67.3
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCC-EEEEEcccccccccCCCceeEEEE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIP-IKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~-v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
+++++-+|+..=.+-+.....+ .++|+.||.++--++. . ...+ .++...|+........++||++.|
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~G--A~~iltveyn~L~i~~--~--------~~dr~ssi~p~df~~~~~~y~~~fD~~as 69 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHG--AAKILTVEYNKLEIQE--E--------FRDRLSSILPVDFAKNWQKYAGSFDFAAS 69 (177)
T ss_pred CceEEEEecCCchhhHHHHHcC--CceEEEEeecccccCc--c--------cccccccccHHHHHHHHHHhhccchhhhe
Confidence 4566777776555544444443 4689999987522211 0 1111 223344544444333478999887
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCC---ChHHHHHHHHHHhhccccCeEEEEEEcCCCH----------HHHHHH
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSN---GLSSIKEIVKNASKYLVKNGLLLIEHGYNQS----------NLVRKL 543 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~---gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~----------~~l~~l 543 (570)
--..- +..|....| .... .+.+..+..+||+||.+++.+|.... ..++-.
T Consensus 70 ~~siE----------------h~GLGRYGDPidp~Gd-l~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~ 132 (177)
T PF03269_consen 70 FSSIE----------------HFGLGRYGDPIDPIGD-LRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLA 132 (177)
T ss_pred echhc----------------cccccccCCCCCcccc-HHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHH
Confidence 22110 011111111 1112 35566788899999999998765431 112222
Q ss_pred HHHCCCeeEEEEe
Q psy2395 544 LFKYGFSDIKSWR 556 (570)
Q Consensus 544 l~~~Gf~~i~~~~ 556 (570)
+-=.||..+..+.
T Consensus 133 mm~~gfe~i~tfs 145 (177)
T PF03269_consen 133 MMFYGFEWIDTFS 145 (177)
T ss_pred HHhCCcEEEeeec
Confidence 2235888877654
No 354
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=79.18 E-value=13 Score=41.00 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=43.0
Q ss_pred ChHHHHHHHHHHhhccccCeEEEEE--EcCCCHHHHHHHHHHC--C--CeeE---------EEEecCCCCceEEEEE
Q psy2395 507 GLSSIKEIVKNASKYLVKNGLLLIE--HGYNQSNLVRKLLFKY--G--FSDI---------KSWRDLSGIERVTQGK 568 (570)
Q Consensus 507 gl~~~~~~l~~~~~~LkpgG~l~~~--~~~~~~~~l~~ll~~~--G--f~~i---------~~~~D~~g~~R~~~~~ 568 (570)
.+..+...++.+.++|++|-.++++ ++....+.+...+.+. | |... ....|+...+|+++|-
T Consensus 102 Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PErl~~G~a~~d~~~p~riViG~ 178 (473)
T PLN02353 102 DLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIEDLFKPDRVLIGG 178 (473)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCCccCCCCcccccCCCCEEEEcc
Confidence 3567788999999999887766664 3566667777777653 3 4332 3456888889998763
No 355
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=78.66 E-value=3.6 Score=41.20 Aligned_cols=47 Identities=21% Similarity=0.456 Sum_probs=36.5
Q ss_pred CCEEEEECCcccHHHHHHHHhcCC-------CcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKN-------KIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~-------~~~V~gvDis~~al~~A~~n~~~ 444 (570)
+.+|+|+|+|+|.++.-++..... ..+++-||+||.+.+.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 479999999999999988765431 35899999999999888888754
No 356
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=77.55 E-value=14 Score=38.43 Aligned_cols=45 Identities=11% Similarity=0.059 Sum_probs=30.9
Q ss_pred CCCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.++.+||=+||| .|.+++.+++......+|+++|.++.-++.|+.
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 457899999976 333444555542114689999999988888764
No 357
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=77.23 E-value=20 Score=36.75 Aligned_cols=43 Identities=33% Similarity=0.387 Sum_probs=33.4
Q ss_pred CCCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.++.+||..||| .|..++.+|+.. +.+|++++.++...+.++.
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH
Confidence 456788888876 477788888776 5789999999988877754
No 358
>KOG2920|consensus
Probab=77.01 E-value=1.9 Score=43.62 Aligned_cols=54 Identities=15% Similarity=0.141 Sum_probs=39.7
Q ss_pred chhHHHHHHHHHhh----cCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHH
Q psy2395 380 RPETELLVDLIVKK----TFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFAL 435 (570)
Q Consensus 380 r~~t~~l~~~~~~~----~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al 435 (570)
..-+..++..+... ..-.+++|||+|||+|.-++.+...+ ...+...|.|.+.+
T Consensus 95 wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~--~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 95 WECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKG--AVSVHFQDFNAEVL 152 (282)
T ss_pred eecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhc--cceeeeEecchhhe
Confidence 34445555555433 22367899999999999999988765 37899999998887
No 359
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=76.67 E-value=7 Score=44.73 Aligned_cols=45 Identities=9% Similarity=0.057 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCccccCCHH-HHHHHHHHHhhhhhH
Q psy2395 4 LMLSKLEKFSKRLKELDFLLTQKEVHNNIK-DYCKKVREHSFLYPI 48 (570)
Q Consensus 4 ~~~~~l~~~~~r~~~l~~~l~~p~~w~d~~-~~~~l~ke~~~L~~~ 48 (570)
.+...+++++++.++|++.|.+|++++|.. ++.++.+++..++..
T Consensus 572 ~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (635)
T PRK11147 572 QLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQE 617 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999987766 888888888777744
No 360
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=74.98 E-value=7.1 Score=41.42 Aligned_cols=117 Identities=17% Similarity=0.241 Sum_probs=66.1
Q ss_pred CEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccc------------ccccc
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNW------------YNNLQ 465 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~------------~~~l~ 465 (570)
.+|-=+ |-|++++.+|-.+ ..+.+|+|+||++..++....-- ..+..-+. +....
T Consensus 10 ~~I~Vi--GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~----------~~i~e~~~~~~v~~~v~~g~lraTt 77 (436)
T COG0677 10 ATIGVI--GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGE----------SYIEEPDLDEVVKEAVESGKLRATT 77 (436)
T ss_pred eEEEEE--ccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCc----------ceeecCcHHHHHHHHHhcCCceEec
Confidence 344444 5677777776543 22578999999999887654211 11111111 11111
Q ss_pred cC--CCceeEEEEC-CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE--cCCCHHHH
Q psy2395 466 NY--KKLFNIIVAN-PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH--GYNQSNLV 540 (570)
Q Consensus 466 ~~--~~~fD~Iv~N-PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~l 540 (570)
.+ -...|+++.. |-.... ..+| .+.+.....+.+..+|++|-.++++. +++..+++
T Consensus 78 d~~~l~~~dv~iI~VPTPl~~----------~~~p---------Dls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v 138 (436)
T COG0677 78 DPEELKECDVFIICVPTPLKK----------YREP---------DLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEV 138 (436)
T ss_pred ChhhcccCCEEEEEecCCcCC----------CCCC---------ChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHH
Confidence 10 0256766554 322111 1233 35677889999999999999999965 45556666
Q ss_pred HHHHHH
Q psy2395 541 RKLLFK 546 (570)
Q Consensus 541 ~~ll~~ 546 (570)
...+.+
T Consensus 139 ~~plle 144 (436)
T COG0677 139 VKPLLE 144 (436)
T ss_pred HHHHHh
Confidence 555444
No 361
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=74.91 E-value=15 Score=36.06 Aligned_cols=43 Identities=30% Similarity=0.404 Sum_probs=33.1
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMGTGS-GAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlGcGt-G~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.++.+||..|+|+ |..++.+++.. +.+|++++.++...+.++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH
Confidence 4678999999986 66666677665 4799999999887777643
No 362
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=74.59 E-value=18 Score=37.83 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=30.5
Q ss_pred CCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeC---CHHHHHHHHH
Q psy2395 397 KKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDI---SKFALKIAKK 440 (570)
Q Consensus 397 ~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDi---s~~al~~A~~ 440 (570)
++.+||=+||| .|.+++.+|+.. +++|++++. ++.-++.+++
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~~ 217 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVEE 217 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHH
Confidence 56788888886 366677777765 468999987 6777776653
No 363
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.49 E-value=18 Score=35.91 Aligned_cols=80 Identities=13% Similarity=0.039 Sum_probs=49.2
Q ss_pred CCCEEEEECCcc-cHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc---------c
Q psy2395 397 KKIKLLEMGTGS-GAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL---------Q 465 (570)
Q Consensus 397 ~~~~VLDlGcGt-G~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l---------~ 465 (570)
.+..+|-.|+++ +.++..+++.+ ..+++|+.++.++...+.+.+.... .+ .+.++..|+.+.. .
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~----~~-~~~~~~~D~~~~~~v~~~~~~~~ 83 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEE----LD-APIFLPLDVREPGQLEAVFARIA 83 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHh----hc-cceEEecCcCCHHHHHHHHHHHH
Confidence 356889999887 37777777554 2357899889886554433333322 11 2456778875421 1
Q ss_pred cCCCceeEEEECCCCC
Q psy2395 466 NYKKLFNIIVANPPYI 481 (570)
Q Consensus 466 ~~~~~fD~Iv~NPPy~ 481 (570)
...++.|++|.|.-+.
T Consensus 84 ~~~g~ld~lv~nAg~~ 99 (258)
T PRK07533 84 EEWGRLDFLLHSIAFA 99 (258)
T ss_pred HHcCCCCEEEEcCccC
Confidence 1115789999997554
No 364
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.59 E-value=37 Score=33.68 Aligned_cols=82 Identities=11% Similarity=0.033 Sum_probs=48.6
Q ss_pred CCCEEEEECCcc-cHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------
Q psy2395 397 KKIKLLEMGTGS-GAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ--------- 465 (570)
Q Consensus 397 ~~~~VLDlGcGt-G~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~--------- 465 (570)
.+..+|=.|+++ +.++..+++.+ ..+++|+.++.+....+..++-.... .+.++.++..|+.+...
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~ 82 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTL---EGQESLLLPCDVTSDEEITACFETIK 82 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHc---CCCceEEEecCCCCHHHHHHHHHHHH
Confidence 356889899873 77777777654 23578888875432222222222211 12357788889865311
Q ss_pred cCCCceeEEEECCCCC
Q psy2395 466 NYKKLFNIIVANPPYI 481 (570)
Q Consensus 466 ~~~~~fD~Iv~NPPy~ 481 (570)
..-+++|++|.|..+.
T Consensus 83 ~~~g~ld~lv~nag~~ 98 (257)
T PRK08594 83 EEVGVIHGVAHCIAFA 98 (257)
T ss_pred HhCCCccEEEECcccC
Confidence 1126799999997654
No 365
>KOG0024|consensus
Probab=73.17 E-value=7.3 Score=40.24 Aligned_cols=44 Identities=30% Similarity=0.401 Sum_probs=38.5
Q ss_pred CCCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
+.+.+||=+|+| .|..+...|+... ..+|+.+|+++..++.|++
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK 212 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH
Confidence 578899999999 5777778887765 6899999999999999998
No 366
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=73.16 E-value=84 Score=30.72 Aligned_cols=77 Identities=17% Similarity=0.122 Sum_probs=48.8
Q ss_pred CCCEEEEECCcccH----HHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc-ccccCCCce
Q psy2395 397 KKIKLLEMGTGSGA----IAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN-NLQNYKKLF 471 (570)
Q Consensus 397 ~~~~VLDlGcGtG~----i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~-~l~~~~~~f 471 (570)
+...+++.+|+.|. ++++.|.+.. +.+++.|--++..+...++.+...+ ....++|+.++..+ .++.. ...
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~T-gGR~vCIvp~~~~~~~~~~~l~~~~--~~~~vEfvvg~~~e~~~~~~-~~i 116 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQT-GGRHVCIVPDEQSLSEYKKALGEAG--LSDVVEFVVGEAPEEVMPGL-KGI 116 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhc-CCeEEEEcCChhhHHHHHHHHhhcc--ccccceEEecCCHHHHHhhc-cCC
Confidence 45678999766443 3333343322 5789999988888777777776432 22347999998533 33332 468
Q ss_pred eEEEEC
Q psy2395 472 NIIVAN 477 (570)
Q Consensus 472 D~Iv~N 477 (570)
|+++.+
T Consensus 117 DF~vVD 122 (218)
T PF07279_consen 117 DFVVVD 122 (218)
T ss_pred CEEEEe
Confidence 888874
No 367
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=72.80 E-value=6.7 Score=38.49 Aligned_cols=121 Identities=21% Similarity=0.237 Sum_probs=63.5
Q ss_pred CCc-ccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc----------ccCCCcee
Q psy2395 405 GTG-SGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL----------QNYKKLFN 472 (570)
Q Consensus 405 GcG-tG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l----------~~~~~~fD 472 (570)
|+| ++.++..+|+.+ ..+++|+.++.+++.++.+-..+... .+ ..++..|+.+.. ....+++|
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~---~~--~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD 75 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKE---YG--AEVIQCDLSDEESVEALFDEAVERFGGRID 75 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHH---TT--SEEEESCTTSHHHHHHHHHHHHHHHCSSES
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHH---cC--CceEeecCcchHHHHHHHHHHHhhcCCCeE
Confidence 566 455666666543 23689999999999875555444432 23 336889985421 11126899
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
++|.|..+.+.........+...+-... .....+-....+.+.+..+++++|.+++..
T Consensus 76 ~lV~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~gsii~is 133 (241)
T PF13561_consen 76 ILVNNAGISPPSNVEKPLLDLSEEDWDK--TFDINVFSPFLLAQAALPLMKKGGSIINIS 133 (241)
T ss_dssp EEEEEEESCTGGGTSSSGGGSHHHHHHH--HHHHHTHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEecccccccccCCCChHhCCHHHHHH--HHHHHHHHHHHHHHHHHHHHhhCCCccccc
Confidence 9999865543311000000000000000 000011123456666666888899887753
No 368
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=72.12 E-value=30 Score=35.14 Aligned_cols=92 Identities=14% Similarity=0.229 Sum_probs=49.0
Q ss_pred EEEEEcccccccccCCCce-eEEEECCCCCCCCCcccCCCCcccccccccccc-CCChHHHHHHHHHHhhcc-ccCeEEE
Q psy2395 453 IKFIKSNWYNNLQNYKKLF-NIIVANPPYIPKGDIHLNKGDLRFEPINALTDY-SNGLSSIKEIVKNASKYL-VKNGLLL 529 (570)
Q Consensus 453 v~~~~~D~~~~l~~~~~~f-D~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~-~~gl~~~~~~l~~~~~~L-kpgG~l~ 529 (570)
+++.++|+.+.+... .+= |+|.++|||.+....... ..| ++ .-.......+++ +..-| ...|..+
T Consensus 157 ~~i~~~df~~v~~~a-~~~~dfvY~DPPY~~~s~t~~f---~~Y-------~~~~f~~~~~~~La~-~~~~l~~~~~i~~ 224 (274)
T COG0338 157 ATIENGDFEEVLADA-DSGDDFVYCDPPYLPLSATSNF---TAY-------GGNGFTEDQHLRLAE-VLKELEGKRGISV 224 (274)
T ss_pred CeEEcCCHHHHHhhc-cCCCcEEEeCCCCCcccccccc---ccc-------cCCCCChHHHHHHHH-HHHhccccceEEE
Confidence 889999997766532 344 899999999975421000 000 11 112233344444 44455 5566555
Q ss_pred EEEcCCCHHHHHHHHHHCC-CeeEEEEec
Q psy2395 530 IEHGYNQSNLVRKLLFKYG-FSDIKSWRD 557 (570)
Q Consensus 530 ~~~~~~~~~~l~~ll~~~G-f~~i~~~~D 557 (570)
+... ...+...++.+... +..+...+.
T Consensus 225 ~~sn-~~~~~~~~ly~~~~q~~~~~akr~ 252 (274)
T COG0338 225 LDSN-SDTEETRELYKQFAQIGLVKAKRS 252 (274)
T ss_pred ecCc-cchHHHHHHHHhhhhheeeeeeee
Confidence 5443 35555566654433 444444443
No 369
>KOG0995|consensus
Probab=71.99 E-value=32 Score=38.04 Aligned_cols=94 Identities=15% Similarity=0.090 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHh-hC-ChhHHHHHHHH
Q psy2395 4 LMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEM-LN-DLEMRNFALDE 81 (570)
Q Consensus 4 ~~~~~l~~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l-~~-D~~~~~~a~~e 81 (570)
.+...++.+++.-.+|+++++ ..-.++.+-..+-++++.|+.-+..|+.|....+.-....+= ++ =.+-.+.-++|
T Consensus 232 ~i~~~ie~l~~~n~~l~e~i~--e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE 309 (581)
T KOG0995|consen 232 SIANEIEDLKKTNRELEEMIN--EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEE 309 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888889998888 455677888888889999999999999887766554432221 11 01123445566
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy2395 82 INLAKKRIFDIELEIKKL 99 (570)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~ 99 (570)
++.++.+.+.|...+...
T Consensus 310 ~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 310 IEKLQKENDELKKQIELQ 327 (581)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 666666666666655544
No 370
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.88 E-value=18 Score=35.76 Aligned_cols=77 Identities=17% Similarity=0.067 Sum_probs=47.7
Q ss_pred CCEEEEECCcc-cHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------c
Q psy2395 398 KIKLLEMGTGS-GAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------N 466 (570)
Q Consensus 398 ~~~VLDlGcGt-G~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~ 466 (570)
+..+|-.|.++ +.++..+++.+ ..+++|+.++.+....+.+++. ....+.++..|+.+... .
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~-------~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKL-------VDEEDLLVECDVASDESIERAFATIKE 79 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhh-------ccCceeEEeCCCCCHHHHHHHHHHHHH
Confidence 56788888774 56777776554 2367899888774332222221 12247788899865311 1
Q ss_pred CCCceeEEEECCCCC
Q psy2395 467 YKKLFNIIVANPPYI 481 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~ 481 (570)
.-+++|++|.|..+.
T Consensus 80 ~~g~iD~lv~nAg~~ 94 (252)
T PRK06079 80 RVGKIDGIVHAIAYA 94 (252)
T ss_pred HhCCCCEEEEccccc
Confidence 115799999997654
No 371
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=71.67 E-value=69 Score=34.24 Aligned_cols=139 Identities=17% Similarity=0.230 Sum_probs=77.3
Q ss_pred cccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHh--------hcc--cCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 407 GSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKK--------KLT--KYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 407 GtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~--------~~~--~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
|+|+.++..+..+ ..+..|+++|+++.-++..+....- ... ....++.| ..|..... ...|+++
T Consensus 7 GtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~f-Ttd~~~a~----~~adv~f 81 (414)
T COG1004 7 GTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRF-TTDYEEAV----KDADVVF 81 (414)
T ss_pred CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEE-EcCHHHHH----hcCCEEE
Confidence 5566654433211 1136899999999988877643210 000 00111222 22332222 2356666
Q ss_pred EC--CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE--EEcCCCHHHHHHHHHHCC---
Q psy2395 476 AN--PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI--EHGYNQSNLVRKLLFKYG--- 548 (570)
Q Consensus 476 ~N--PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~--~~~~~~~~~l~~ll~~~G--- 548 (570)
.- -||-+ .|...+.......+.+...++..-.++. .+|.+..+.+++.+....
T Consensus 82 IavgTP~~~--------------------dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~ 141 (414)
T COG1004 82 IAVGTPPDE--------------------DGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK 141 (414)
T ss_pred EEcCCCCCC--------------------CCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC
Confidence 53 23322 1222355677788888888887754444 457788888887776543
Q ss_pred -CeeE---------EEEecCCCCceEEEEEeC
Q psy2395 549 -FSDI---------KSWRDLSGIERVTQGKIS 570 (570)
Q Consensus 549 -f~~i---------~~~~D~~g~~R~~~~~~~ 570 (570)
|.++ ....|...-+|+|+|..|
T Consensus 142 ~f~v~~NPEFLREG~Av~D~~~PdRIViG~~~ 173 (414)
T COG1004 142 DFEVASNPEFLREGSAVYDFLYPDRIVIGVRS 173 (414)
T ss_pred CceEecChHHhcCcchhhhccCCCeEEEccCC
Confidence 4333 345688888999998643
No 372
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=71.53 E-value=9.5 Score=43.69 Aligned_cols=88 Identities=16% Similarity=0.204 Sum_probs=0.0
Q ss_pred CceeEEEECCCCCCCCCcccC------------------------------CCCccccccccccccCC-------ChHHH
Q psy2395 469 KLFNIIVANPPYIPKGDIHLN------------------------------KGDLRFEPINALTDYSN-------GLSSI 511 (570)
Q Consensus 469 ~~fD~Iv~NPPy~~~~~~~~~------------------------------~~~~~~ep~~al~~~~~-------gl~~~ 511 (570)
++||+|+.+|||...-....+ .+.+..-+..-..++.+ =...+
T Consensus 488 ekfd~IVtDPPY~DdVpY~elsDffYvWlkr~l~~i~~~~~e~~~~w~~f~~~ev~~~~~~~~~~~~~~E~a~~~fe~l~ 567 (875)
T COG1743 488 EKFDVIVTDPPYYDDVPYAELSDFFYVWLKRILGRIGGKWLEIATQWQEFAKDEVSTNEGRFVGGGGRKEGAVEEFENLF 567 (875)
T ss_pred ccCceeecCCCcccCCCcccccceeeeehHhhhhhccccccchhhHhHHHhhcccccCcccccCCCcchhHHHHHHHHHH
Q ss_pred HHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHH----CCCeeEEEEe
Q psy2395 512 KEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFK----YGFSDIKSWR 556 (570)
Q Consensus 512 ~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~----~Gf~~i~~~~ 556 (570)
.++++.+..+|+++|.++..+.+.+.+.-..++.. +||.+...++
T Consensus 568 ~~a~~~~rEll~ddg~lv~y~ahk~~eaW~tlveA~~Rragl~iTr~~p 616 (875)
T COG1743 568 REAFQAVRELLKDDGRLVTYYAHKAPEAWITLVEAGWRRAGLQITRAWP 616 (875)
T ss_pred HHHHHHHHHhcCCCCeEEEEEeccCccchHHHHHHHhhhcCceeecccc
No 373
>KOG1098|consensus
Probab=71.53 E-value=6.2 Score=43.93 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=33.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCH
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISK 432 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~ 432 (570)
.+...|||+||-.|.+....++..|.+.-|+|||+-|
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 5677899999999999999999888888999999966
No 374
>KOG0804|consensus
Probab=71.44 E-value=45 Score=35.83 Aligned_cols=93 Identities=14% Similarity=0.151 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHhcC-ccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh-CC--------hhHHHH
Q psy2395 8 KLEKFSKRLKELDFLLTQ-KEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEML-ND--------LEMRNF 77 (570)
Q Consensus 8 ~l~~~~~r~~~l~~~l~~-p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~-~D--------~~~~~~ 77 (570)
.|+..++.|+.+-++... .+--+|...++++.- ..+...-+.++++.+.+++.+|+-.++ ++ .++.+-
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e--~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~ 425 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVE--RKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEER 425 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 455555555554444433 222234454444432 234555556666666777777776666 22 234444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Q psy2395 78 ALDEINLAKKRIFDIELEIKKLILP 102 (570)
Q Consensus 78 a~~e~~~~~~~~~~~~~~l~~~ll~ 102 (570)
..+.+.+...++.+|+++|..+++.
T Consensus 426 ~~~~~~s~d~~I~dLqEQlrDlmf~ 450 (493)
T KOG0804|consen 426 EKEALGSKDEKITDLQEQLRDLMFF 450 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhee
Confidence 5555666778888888888777664
No 375
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.08 E-value=29 Score=34.94 Aligned_cols=79 Identities=16% Similarity=0.080 Sum_probs=47.2
Q ss_pred CCEEEEECCcc-cHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------c
Q psy2395 398 KIKLLEMGTGS-GAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------N 466 (570)
Q Consensus 398 ~~~VLDlGcGt-G~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~ 466 (570)
+..+|=.|+++ +.++..+++.+ ..+++|+.++.+....+.+...... .+.. .++..|+.+... .
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~----~~~~-~~~~~Dv~d~~~v~~~~~~i~~ 79 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQE----LGSD-YVYELDVSKPEHFKSLAESLKK 79 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHh----cCCc-eEEEecCCCHHHHHHHHHHHHH
Confidence 56788888863 56777666543 2357899999886433333333222 1222 467788865311 1
Q ss_pred CCCceeEEEECCCCC
Q psy2395 467 YKKLFNIIVANPPYI 481 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~ 481 (570)
..+++|++|.|..+.
T Consensus 80 ~~g~iDilVnnAG~~ 94 (274)
T PRK08415 80 DLGKIDFIVHSVAFA 94 (274)
T ss_pred HcCCCCEEEECCccC
Confidence 126799999997654
No 376
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=70.89 E-value=1.4e+02 Score=31.14 Aligned_cols=121 Identities=14% Similarity=0.044 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Q psy2395 3 HLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEMLNDLEMRNFALDEI 82 (570)
Q Consensus 3 ~~~~~~l~~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~~D~~~~~~a~~e~ 82 (570)
|.+..+.+.+..++..|.+....++. -|+.+...+..+++.+...++..++ .+.+++.=.+-+. .+ .+...++.
T Consensus 180 ~~l~~~~~~L~~e~~~Lk~~~~e~~~-~D~~eL~~lr~eL~~~~~~i~~~k~---~l~el~~el~~l~-~~-i~~~~~~k 253 (325)
T PF08317_consen 180 PKLRERKAELEEELENLKQLVEEIES-CDQEELEALRQELAEQKEEIEAKKK---ELAELQEELEELE-EK-IEELEEQK 253 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh-cCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HH-HHHHHHHH
Confidence 44566666666666666666665554 3677777766666665555553222 2222221111111 11 23344455
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEE
Q psy2395 83 NLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIIS 150 (570)
Q Consensus 83 ~~~~~~~~~~~~~l~~~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~ 150 (570)
..+..++.+++..+... .|-+. .=+..|-..|...-...||++.-+.
T Consensus 254 ~~l~~eI~e~~~~~~~~-------------------r~~t~--~Ev~~Lk~~~~~Le~~~gw~~~~~~ 300 (325)
T PF08317_consen 254 QELLAEIAEAEKIREEC-------------------RGWTR--SEVKRLKAKVDALEKLTGWKIVSIS 300 (325)
T ss_pred HHHHHHHHHHHHHHHHh-------------------cCCCH--HHHHHHHHHHHHHHHHHCcEEEEEe
Confidence 55555555555333211 11111 1256788888889999999998876
No 377
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=69.83 E-value=33 Score=35.55 Aligned_cols=43 Identities=16% Similarity=0.107 Sum_probs=32.1
Q ss_pred CCCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.++.+||=.|+| .|.+++.+|+.. +++|++++.+++-++.|++
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALA 207 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH
Confidence 467789988875 444556667665 5689999999998877765
No 378
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=69.26 E-value=26 Score=34.53 Aligned_cols=79 Identities=16% Similarity=0.138 Sum_probs=54.2
Q ss_pred CCCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc---------
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN--------- 466 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~--------- 466 (570)
.+.++|=.| |+|.++..+++.+ ..+++|+.++-++..++.+...+.. .+.++.++.+|+.+....
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~----~~~~~~~~~~Dl~d~~~i~~~~~~~~~ 85 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEA----LGIDALWIAADVADEADIERLAEETLE 85 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh----cCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 356788888 6777888877654 2357899999998877766655543 344678899998653111
Q ss_pred CCCceeEEEECCCC
Q psy2395 467 YKKLFNIIVANPPY 480 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy 480 (570)
..+++|.||.|...
T Consensus 86 ~~~~id~vi~~ag~ 99 (259)
T PRK08213 86 RFGHVDILVNNAGA 99 (259)
T ss_pred HhCCCCEEEECCCC
Confidence 01468999998764
No 379
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=69.22 E-value=26 Score=34.39 Aligned_cols=80 Identities=18% Similarity=0.101 Sum_probs=53.8
Q ss_pred CCCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------c
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------N 466 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~ 466 (570)
.+.+||=.| |+|.++..+++.+ ..+++|++++-++..++.....+.. .+.++.++.+|+.+... .
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKG----QGLSAHALAFDVTDHDAVRAAIDAFEA 83 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh----cCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 356888888 5777888777644 2367999999998877665555543 23457888899865211 1
Q ss_pred CCCceeEEEECCCCC
Q psy2395 467 YKKLFNIIVANPPYI 481 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~ 481 (570)
.-++.|++|.|....
T Consensus 84 ~~~~~d~li~~ag~~ 98 (255)
T PRK07523 84 EIGPIDILVNNAGMQ 98 (255)
T ss_pred hcCCCCEEEECCCCC
Confidence 114689999987543
No 380
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=69.16 E-value=33 Score=36.66 Aligned_cols=75 Identities=17% Similarity=0.242 Sum_probs=48.9
Q ss_pred CEEEEECCcccHHHHHHHHhcC--CCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc--cCCCceeEE
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYSK--NKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ--NYKKLFNII 474 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~~--~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~--~~~~~fD~I 474 (570)
.+||=||| |.++...|..+. ...+|+..|-+++.++.+..+.. .+++..+-|+.+.-. ..-..+|+|
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-------~~v~~~~vD~~d~~al~~li~~~d~V 72 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-------GKVEALQVDAADVDALVALIKDFDLV 72 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-------ccceeEEecccChHHHHHHHhcCCEE
Confidence 46889999 556555554321 13699999999998888776643 257888888865311 111456998
Q ss_pred EEC-CCCCC
Q psy2395 475 VAN-PPYIP 482 (570)
Q Consensus 475 v~N-PPy~~ 482 (570)
|+- |||+.
T Consensus 73 In~~p~~~~ 81 (389)
T COG1748 73 INAAPPFVD 81 (389)
T ss_pred EEeCCchhh
Confidence 886 55543
No 381
>PRK07454 short chain dehydrogenase; Provisional
Probab=69.14 E-value=27 Score=33.94 Aligned_cols=79 Identities=15% Similarity=0.057 Sum_probs=51.8
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc---------C
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN---------Y 467 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~---------~ 467 (570)
..++|=.|+ +|.++..+++.+ ..+.+|++++.++.........+.. .+.++.++.+|+.+.... .
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRS----TGVKAAAYSIDLSNPEAIAPGIAELLEQ 80 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----CCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 457788884 677777777544 2357999999998766555444432 244688899998653210 0
Q ss_pred CCceeEEEECCCCC
Q psy2395 468 KKLFNIIVANPPYI 481 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~ 481 (570)
.++.|++|.|..+.
T Consensus 81 ~~~id~lv~~ag~~ 94 (241)
T PRK07454 81 FGCPDVLINNAGMA 94 (241)
T ss_pred cCCCCEEEECCCcc
Confidence 14689999987554
No 382
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=68.79 E-value=50 Score=33.24 Aligned_cols=62 Identities=10% Similarity=0.053 Sum_probs=38.3
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccc
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWY 461 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~ 461 (570)
....|+.+|||-=.-+..+. .+.+.+++=+|. |+.++.-++.+...+.....+.+++..|+.
T Consensus 81 g~~qvV~LGaGlDTr~~Rl~--~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~ 142 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRLP--WPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLR 142 (260)
T ss_pred CCcEEEEeCCccccHHHhcC--CCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCch
Confidence 34579999999776665553 122356666664 556666666665432223346888888886
No 383
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=68.72 E-value=24 Score=36.09 Aligned_cols=42 Identities=14% Similarity=0.029 Sum_probs=28.4
Q ss_pred CCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy2395 397 KKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAK 439 (570)
Q Consensus 397 ~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~ 439 (570)
++.++|=+||| .|.+++.+|+... ...|+++|.++..++.|.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~ 186 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGAT 186 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhh
Confidence 35578877876 4666677777653 234778899888776664
No 384
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=68.53 E-value=23 Score=37.08 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=34.0
Q ss_pred CCCCEEEEECC--cccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMGT--GSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlGc--GtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.++.+||=.|+ |.|.+++.+|+.. +++|++++.+++-.+.++.
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~ 201 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKN 201 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH
Confidence 46788988887 4777888888876 5789999999887777653
No 385
>PRK06701 short chain dehydrogenase; Provisional
Probab=67.90 E-value=38 Score=34.36 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=46.8
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHH-HHHHHHHHHHhhcccCCCCEEEEEcccccccc---------c
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKF-ALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------N 466 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~-al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~ 466 (570)
+.++|-.|+ +|.++..+++.+ ..+++|+.++.++. .++.....+.. .+.++.++.+|+.+... .
T Consensus 46 ~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 46 GKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEK----EGVKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHh----cCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 467887775 555666666543 23578999888753 23333333332 24468889999865211 0
Q ss_pred CCCceeEEEECCCCC
Q psy2395 467 YKKLFNIIVANPPYI 481 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~ 481 (570)
..+++|+||.|..+.
T Consensus 121 ~~~~iD~lI~~Ag~~ 135 (290)
T PRK06701 121 ELGRLDILVNNAAFQ 135 (290)
T ss_pred HcCCCCEEEECCccc
Confidence 014689999987543
No 386
>PRK06949 short chain dehydrogenase; Provisional
Probab=67.69 E-value=31 Score=33.78 Aligned_cols=79 Identities=11% Similarity=0.055 Sum_probs=52.7
Q ss_pred CCCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------c
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------N 466 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~ 466 (570)
.+.+||=.| |+|.++..+++.+ ..+++|++++.+++.++.....+.. ...++.++.+|+.+... .
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEA----EGGAAHVVSLDVTDYQSIKAAVAHAET 82 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----cCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 356788888 6677777777554 2357899999998887666555543 23457888889854211 0
Q ss_pred CCCceeEEEECCCC
Q psy2395 467 YKKLFNIIVANPPY 480 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy 480 (570)
..+++|+|+.|...
T Consensus 83 ~~~~~d~li~~ag~ 96 (258)
T PRK06949 83 EAGTIDILVNNSGV 96 (258)
T ss_pred hcCCCCEEEECCCC
Confidence 11468999998654
No 387
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=67.61 E-value=28 Score=35.38 Aligned_cols=43 Identities=26% Similarity=0.232 Sum_probs=28.7
Q ss_pred EEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 400 ~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~ 443 (570)
+|.=+|+|+-..+++..... .+.+|+.+|.+++.++.++.++.
T Consensus 5 kIaViGaG~mG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~~~ 47 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAF-HGFDVTIYDISDEALEKAKERIA 47 (287)
T ss_pred EEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHH
Confidence 57777887544333332221 24689999999999998877643
No 388
>PRK06172 short chain dehydrogenase; Provisional
Probab=67.56 E-value=27 Score=34.21 Aligned_cols=79 Identities=10% Similarity=0.022 Sum_probs=52.9
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------cC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------NY 467 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~~ 467 (570)
+.++|=.|+ +|.++..+++.+ ..+++|+.++-+++.++.+...+.. .+.++.++.+|+.+... ..
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIRE----AGGEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh----cCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467888886 556666666543 2357899999998877766665543 34468899999865311 00
Q ss_pred CCceeEEEECCCCC
Q psy2395 468 KKLFNIIVANPPYI 481 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~ 481 (570)
.+++|+||.|..+.
T Consensus 82 ~g~id~li~~ag~~ 95 (253)
T PRK06172 82 YGRLDYAFNNAGIE 95 (253)
T ss_pred hCCCCEEEECCCCC
Confidence 14689999987653
No 389
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=67.44 E-value=8.1 Score=39.47 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=29.2
Q ss_pred HHhhccccCeEEEEEEcCC-----------CHHHHHHHHHHCCCeeEEE
Q psy2395 517 NASKYLVKNGLLLIEHGYN-----------QSNLVRKLLFKYGFSDIKS 554 (570)
Q Consensus 517 ~~~~~LkpgG~l~~~~~~~-----------~~~~l~~ll~~~Gf~~i~~ 554 (570)
.+..+++|+|.|++|..-. -...+.+++..+||+.+..
T Consensus 239 ~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~~~ 287 (289)
T PF14740_consen 239 ELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPVTN 287 (289)
T ss_pred HHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCccccc
Confidence 5667899999999988531 1467888999999987643
No 390
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=67.20 E-value=11 Score=34.20 Aligned_cols=42 Identities=12% Similarity=0.084 Sum_probs=27.2
Q ss_pred EECCccc--HHHHHHH-HhcCCCcEEEEEeCCHHHHHHHHHH--HHh
Q psy2395 403 EMGTGSG--AIAIAIA-IYSKNKIEIIATDISKFALKIAKKN--AKK 444 (570)
Q Consensus 403 DlGcGtG--~i~l~la-~~~~~~~~V~gvDis~~al~~A~~n--~~~ 444 (570)
|+|++.| .....++ +...+..+|+++|.+|..++..+.| +..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l 47 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLAL 47 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHh
Confidence 8999999 5555543 2233368999999999999999999 554
No 391
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=66.18 E-value=1.3e+02 Score=31.12 Aligned_cols=56 Identities=2% Similarity=-0.139 Sum_probs=36.2
Q ss_pred CccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy2395 25 QKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLIL 101 (570)
Q Consensus 25 ~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~~D~~~~~~a~~e~~~~~~~~~~~~~~l~~~ll 101 (570)
||.+|-||..++.+.+.+ .+.+.+ -||+-.+..++-.+...++++.+.+++...+-
T Consensus 144 dPHiWldp~~~~~~a~~I------~~~L~~---------------~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~l~ 199 (311)
T PRK09545 144 NMHIWLSPEIARATAVAI------HDKLVE---------------LMPQSKAKLDANLKDFEAQLAQTDKQIGNQLA 199 (311)
T ss_pred CCcccCCHHHHHHHHHHH------HHHHHH---------------hChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 899999999988775532 111111 26666666666677777777777766665443
No 392
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=65.98 E-value=73 Score=31.77 Aligned_cols=79 Identities=15% Similarity=0.021 Sum_probs=46.3
Q ss_pred CCEEEEECCcc-cHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc---------cc
Q psy2395 398 KIKLLEMGTGS-GAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL---------QN 466 (570)
Q Consensus 398 ~~~VLDlGcGt-G~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l---------~~ 466 (570)
+..+|=.|+|+ +.++.++++.+ ..+++|+.++.+....+.+..-... ...+.++..|+.+.. ..
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~v~~~~~~~~~ 80 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQ-----LGSDIVLPCDVAEDASIDAMFAELGK 80 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhc-----cCCceEeecCCCCHHHHHHHHHHHHh
Confidence 45788888876 36666665543 2357888888774322333222221 123567788886521 11
Q ss_pred CCCceeEEEECCCCC
Q psy2395 467 YKKLFNIIVANPPYI 481 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~ 481 (570)
.-+++|++|.|..+.
T Consensus 81 ~~g~iD~linnAg~~ 95 (262)
T PRK07984 81 VWPKFDGFVHSIGFA 95 (262)
T ss_pred hcCCCCEEEECCccC
Confidence 125799999997654
No 393
>PRK07576 short chain dehydrogenase; Provisional
Probab=65.80 E-value=33 Score=34.07 Aligned_cols=78 Identities=10% Similarity=0.092 Sum_probs=49.8
Q ss_pred CCCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------c
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------N 466 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~ 466 (570)
++.++|-.| |+|.++..+++.+ ..+++|++++.+++.+......+.. ...++.++..|+.+... .
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~Dv~~~~~i~~~~~~~~~ 82 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQ----AGPEGLGVSADVRDYAAVEAAFAQIAD 82 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH----hCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 355777777 5667777766543 2357899999998776655444432 23356788888864211 0
Q ss_pred CCCceeEEEECCC
Q psy2395 467 YKKLFNIIVANPP 479 (570)
Q Consensus 467 ~~~~fD~Iv~NPP 479 (570)
..+++|++|.|..
T Consensus 83 ~~~~iD~vi~~ag 95 (264)
T PRK07576 83 EFGPIDVLVSGAA 95 (264)
T ss_pred HcCCCCEEEECCC
Confidence 1146899999864
No 394
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=65.76 E-value=25 Score=34.41 Aligned_cols=79 Identities=11% Similarity=0.079 Sum_probs=50.3
Q ss_pred CCCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc-----------c
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN-----------L 464 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~-----------l 464 (570)
++.+||=.| |+|.++..+++.+ ..+++|+++|.++..+......+... ...++.++.+|+... +
T Consensus 11 ~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (247)
T PRK08945 11 KDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAA---GGPQPAIIPLDLLTATPQNYQQLADTI 86 (247)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhc---CCCCceEEEecccCCCHHHHHHHHHHH
Confidence 456888888 5677777776544 22579999999987776655555432 223567777777421 1
Q ss_pred ccCCCceeEEEECCC
Q psy2395 465 QNYKKLFNIIVANPP 479 (570)
Q Consensus 465 ~~~~~~fD~Iv~NPP 479 (570)
....+++|.||.|..
T Consensus 87 ~~~~~~id~vi~~Ag 101 (247)
T PRK08945 87 EEQFGRLDGVLHNAG 101 (247)
T ss_pred HHHhCCCCEEEECCc
Confidence 111157899999854
No 395
>PRK10904 DNA adenine methylase; Provisional
Probab=65.68 E-value=23 Score=35.90 Aligned_cols=86 Identities=14% Similarity=0.158 Sum_probs=48.2
Q ss_pred CEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 452 PIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 452 ~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
++++.+.|+.+.+... .+=|+|.++|||......... ..| ....-+.+...++.+.+..+-..||.+++.
T Consensus 157 ~v~i~~~Df~~~i~~~-~~~~fvYlDPPY~~~~~~~~f---~~y------~~~~f~~~dh~~La~~l~~l~~~~~k~ilS 226 (271)
T PRK10904 157 NAFFYCESYADSMARA-DKGSVVYCDPPYAPLSATANF---TAY------HTNSFSLEQQAHLAEIAEGLVERHIPVLIS 226 (271)
T ss_pred CCEEEECCHHHHHhhc-CCCcEEEECCCCCCCCCCCCC---cCc------ccCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3788999997765432 356899999999753211000 000 011122344555555544433456676654
Q ss_pred EcCCCHHHHHHHHHHCCCee
Q psy2395 532 HGYNQSNLVRKLLFKYGFSD 551 (570)
Q Consensus 532 ~~~~~~~~l~~ll~~~Gf~~ 551 (570)
....+.++++.. +|..
T Consensus 227 --~~d~~~i~elY~--~~~i 242 (271)
T PRK10904 227 --NHDTMLTREWYQ--RAKL 242 (271)
T ss_pred --eCCCHHHHHHHc--CCcE
Confidence 345677888885 4544
No 396
>COG5570 Uncharacterized small protein [Function unknown]
Probab=65.58 E-value=34 Score=25.29 Aligned_cols=49 Identities=14% Similarity=0.064 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHHHHH----hcCccccCCHHHHHHHHHHHhhhhhHHHHHH
Q psy2395 3 HLMLSKLEKFSKRLKELDFL----LTQKEVHNNIKDYCKKVREHSFLYPIVELYN 53 (570)
Q Consensus 3 ~~~~~~l~~~~~r~~~l~~~----l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~ 53 (570)
+++.+.|..+++++..|+.+ |..|.. |......+-++.-.|+.-++.++
T Consensus 1 Maieshl~eL~kkHg~le~ei~ea~n~Ps~--dd~~i~eLKRrKL~lKeeIEkLk 53 (57)
T COG5570 1 MAIESHLAELEKKHGNLEREIQEAMNSPSS--DDLAIRELKRRKLRLKEEIEKLK 53 (57)
T ss_pred CcHHHHHHHHHHhhchHHHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHHh
Confidence 46788899999998766655 566765 66667777777777776666544
No 397
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.52 E-value=58 Score=31.41 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=49.0
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------cC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------NY 467 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~~ 467 (570)
+.+||-.|++ |.++..+++.+ ..+++|++++-++..+..+...... ..++.++.+|+.+... ..
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK-----YGNIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----cCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 4688888875 66666666543 2367999999998876655444332 1257888999865311 00
Q ss_pred CCceeEEEECCC
Q psy2395 468 KKLFNIIVANPP 479 (570)
Q Consensus 468 ~~~fD~Iv~NPP 479 (570)
-+.+|.++.|..
T Consensus 79 ~~~id~ii~~ag 90 (238)
T PRK05786 79 LNAIDGLVVTVG 90 (238)
T ss_pred hCCCCEEEEcCC
Confidence 145799988764
No 398
>PRK07814 short chain dehydrogenase; Provisional
Probab=65.41 E-value=29 Score=34.38 Aligned_cols=79 Identities=10% Similarity=0.081 Sum_probs=52.1
Q ss_pred CCCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc---------
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN--------- 466 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~--------- 466 (570)
++.++|=.| |+|.++..+++.+ ..+++|++++.+++.++.....+.. .+.++.++..|+.+....
T Consensus 9 ~~~~vlItG-asggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (263)
T PRK07814 9 DDQVAVVTG-AGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRA----AGRRAHVVAADLAHPEATAGLAGQAVE 83 (263)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 356788888 4667777776543 2367999999998776655554442 234588888998653211
Q ss_pred CCCceeEEEECCCC
Q psy2395 467 YKKLFNIIVANPPY 480 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy 480 (570)
.-+++|+||.|.-+
T Consensus 84 ~~~~id~vi~~Ag~ 97 (263)
T PRK07814 84 AFGRLDIVVNNVGG 97 (263)
T ss_pred HcCCCCEEEECCCC
Confidence 01468999998654
No 399
>PRK06940 short chain dehydrogenase; Provisional
Probab=65.37 E-value=18 Score=36.44 Aligned_cols=76 Identities=14% Similarity=0.111 Sum_probs=50.4
Q ss_pred EEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc--------cCCCce
Q psy2395 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ--------NYKKLF 471 (570)
Q Consensus 400 ~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~--------~~~~~f 471 (570)
.+|=-|+ |.++..+++.+..+.+|+.+|.++..++.+...+.. .+.++.++.+|+.+... ...+++
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~----~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLRE----AGFDVSTQEVDVSSRESVKALAATAQTLGPV 77 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHh----cCCeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence 4555554 568888887765578999999998776655444432 23467888889855211 001579
Q ss_pred eEEEECCCCC
Q psy2395 472 NIIVANPPYI 481 (570)
Q Consensus 472 D~Iv~NPPy~ 481 (570)
|++|.|..+.
T Consensus 78 d~li~nAG~~ 87 (275)
T PRK06940 78 TGLVHTAGVS 87 (275)
T ss_pred CEEEECCCcC
Confidence 9999997643
No 400
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.36 E-value=34 Score=33.20 Aligned_cols=78 Identities=17% Similarity=0.186 Sum_probs=51.4
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------cC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------NY 467 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~~ 467 (570)
+.++|-.| |+|.++..+++.+ ..+.+|+.++.++...+.....+.. .+.++.++.+|+.+... ..
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEA----YGVKVVIATADVSDYEEVTAAIEQLKNE 81 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH----hCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45778888 4778888777543 2357999999998766554444432 24468889999855321 00
Q ss_pred CCceeEEEECCCC
Q psy2395 468 KKLFNIIVANPPY 480 (570)
Q Consensus 468 ~~~fD~Iv~NPPy 480 (570)
.+..|+||.|...
T Consensus 82 ~~~id~vi~~ag~ 94 (239)
T PRK07666 82 LGSIDILINNAGI 94 (239)
T ss_pred cCCccEEEEcCcc
Confidence 1468999998654
No 401
>KOG4174|consensus
Probab=64.09 E-value=51 Score=32.98 Aligned_cols=144 Identities=18% Similarity=0.132 Sum_probs=78.0
Q ss_pred CCCEEEEECCcccHHHHHHHHhcC-CCcEEEEEeCCHHHH------HHHHHHHHhhcccCCCCEEEEEcccccccc---c
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSK-NKIEIIATDISKFAL------KIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---N 466 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~-~~~~V~gvDis~~al------~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---~ 466 (570)
+..+||.+|=|-=.++..++..+. ....++++.++..-. ..|+.|+.... .++. .-+...|+...-. .
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk-~lG~-~I~h~Vdv~sl~~~~~~ 133 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALK-RLGG-TILHGVDVTSLKFHADL 133 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHH-HcCC-ceEecccceeEEecccc
Confidence 456899999888888888887653 334566665554442 23445544321 0121 1122223322111 1
Q ss_pred CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccc-cCeEEEEEEc---CCCHHHHHH
Q psy2395 467 YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV-KNGLLLIEHG---YNQSNLVRK 542 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk-pgG~l~~~~~---~~~~~~l~~ 542 (570)
--++||-||.|.|+--.... +|.....+. -.-...+.|++.+..+|+ ..|.+.+... +...-.+..
T Consensus 134 ~~~~~d~IiFNFPH~G~g~~--------~e~d~~~i~--~~qkL~rgFle~akemL~~edGeI~itlk~t~P~~~W~ik~ 203 (282)
T KOG4174|consen 134 RLQRYDNIIFNFPHSGKGIK--------FEQDRNIIP--LHQKLFRGFLESAKEMLKDEDGEIHITLKTTYPFNPWNIKF 203 (282)
T ss_pred cccccceEEEcCCCCCCCcc--------cccchHHHH--HHHHHHHHHHHHHHHHHHhcCCcEEEEeccCCCCchhhhhH
Confidence 12689999999886432210 010000000 011356789999999999 8899887442 223344555
Q ss_pred HHHHCCCeeE
Q psy2395 543 LLFKYGFSDI 552 (570)
Q Consensus 543 ll~~~Gf~~i 552 (570)
+.++.|++.+
T Consensus 204 Lak~~gl~L~ 213 (282)
T KOG4174|consen 204 LAKEFGLTLL 213 (282)
T ss_pred hhhhccccch
Confidence 6666676654
No 402
>PRK05599 hypothetical protein; Provisional
Probab=64.02 E-value=37 Score=33.40 Aligned_cols=78 Identities=13% Similarity=0.060 Sum_probs=51.3
Q ss_pred EEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc---------ccCCCc
Q psy2395 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL---------QNYKKL 470 (570)
Q Consensus 400 ~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l---------~~~~~~ 470 (570)
.+|=.|+++ .++..+++.+..+.+|+.++-+++.++.+.+.+... ....+.++..|+.+.. ....++
T Consensus 2 ~vlItGas~-GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 77 (246)
T PRK05599 2 SILILGGTS-DIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQR---GATSVHVLSFDAQDLDTHRELVKQTQELAGE 77 (246)
T ss_pred eEEEEeCcc-HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc---cCCceEEEEcccCCHHHHHHHHHHHHHhcCC
Confidence 466667654 567777765545789999999888877666555532 1224778888886531 111257
Q ss_pred eeEEEECCCCC
Q psy2395 471 FNIIVANPPYI 481 (570)
Q Consensus 471 fD~Iv~NPPy~ 481 (570)
.|++|.|+-+.
T Consensus 78 id~lv~nag~~ 88 (246)
T PRK05599 78 ISLAVVAFGIL 88 (246)
T ss_pred CCEEEEecCcC
Confidence 99999987654
No 403
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=63.55 E-value=30 Score=38.37 Aligned_cols=42 Identities=24% Similarity=0.172 Sum_probs=32.6
Q ss_pred CCCEEEEECCcc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 397 KKIKLLEMGTGS-GAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 397 ~~~~VLDlGcGt-G~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
++.+|+=+|||. |..++.+++.. ++.|+++|.++..++.++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 467999999984 55566666665 4689999999998877765
No 404
>KOG0971|consensus
Probab=63.45 E-value=88 Score=36.64 Aligned_cols=62 Identities=24% Similarity=0.237 Sum_probs=42.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhC-ChhHHH----HHHHHHHHHHHHHHHHHHHHHH
Q psy2395 37 KKVREHSFLYPIVELYNNYKKINEDIITAKEMLN-DLEMRN----FALDEINLAKKRIFDIELEIKK 98 (570)
Q Consensus 37 ~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~~-D~~~~~----~a~~e~~~~~~~~~~~~~~l~~ 98 (570)
.|.+...+.+...+.-++++....|..+..||+. |.||.+ -+..|++.+++++++++.+|+.
T Consensus 284 el~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEI 350 (1243)
T KOG0971|consen 284 ELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEI 350 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666777777888888888888888884 766543 2445566677777777766663
No 405
>PRK07326 short chain dehydrogenase; Provisional
Probab=63.03 E-value=29 Score=33.49 Aligned_cols=76 Identities=17% Similarity=0.100 Sum_probs=50.1
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc---------C
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN---------Y 467 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~---------~ 467 (570)
+.+||-.| |+|.++..+++.+ ..+.+|++++.++.........+.. ..++.++.+|+.+.... .
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNN-----KGNVLGLAADVRDEADVQRAVDAIVAA 79 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhc-----cCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45788888 5777877777544 2357899999998776655544432 14588899998643110 0
Q ss_pred CCceeEEEECCC
Q psy2395 468 KKLFNIIVANPP 479 (570)
Q Consensus 468 ~~~fD~Iv~NPP 479 (570)
.+.+|+||.+..
T Consensus 80 ~~~~d~vi~~ag 91 (237)
T PRK07326 80 FGGLDVLIANAG 91 (237)
T ss_pred cCCCCEEEECCC
Confidence 136899998753
No 406
>PRK07806 short chain dehydrogenase; Provisional
Probab=63.03 E-value=1.2e+02 Score=29.31 Aligned_cols=78 Identities=10% Similarity=-0.035 Sum_probs=45.9
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHH-HHHHHHHHHHhhcccCCCCEEEEEccccccccc---------
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKF-ALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN--------- 466 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~-al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~--------- 466 (570)
+.++|-.|+ +|.++..+++.+ ..+.+|++++.+.. ..+.....+.. .+.++.++.+|+.+....
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEA----AGGRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHh----cCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 467888885 455776666543 23578988877542 33333332322 234578889998653210
Q ss_pred CCCceeEEEECCCC
Q psy2395 467 YKKLFNIIVANPPY 480 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy 480 (570)
.-+.+|++|.|...
T Consensus 81 ~~~~~d~vi~~ag~ 94 (248)
T PRK07806 81 EFGGLDALVLNASG 94 (248)
T ss_pred hCCCCcEEEECCCC
Confidence 01368999998754
No 407
>PRK08643 acetoin reductase; Validated
Probab=62.93 E-value=76 Score=31.03 Aligned_cols=78 Identities=18% Similarity=0.116 Sum_probs=50.8
Q ss_pred CEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------cCC
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------NYK 468 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~~~ 468 (570)
.++|=.| |+|.++..+++.+ ..+++|+.++.++..++.+...+.. .+.++.++.+|+.+... ...
T Consensus 3 k~~lItG-as~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (256)
T PRK08643 3 KVALVTG-AGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSK----DGGKAIAVKADVSDRDQVFAAVRQVVDTF 77 (256)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----cCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3566566 5566777666543 2357999999998877766665543 23457888999865321 111
Q ss_pred CceeEEEECCCCC
Q psy2395 469 KLFNIIVANPPYI 481 (570)
Q Consensus 469 ~~fD~Iv~NPPy~ 481 (570)
++.|++|.|..+.
T Consensus 78 ~~id~vi~~ag~~ 90 (256)
T PRK08643 78 GDLNVVVNNAGVA 90 (256)
T ss_pred CCCCEEEECCCCC
Confidence 4689999997654
No 408
>PRK09343 prefoldin subunit beta; Provisional
Probab=62.87 E-value=57 Score=28.77 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=30.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy2395 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYK 56 (570)
Q Consensus 1 ~~~~~~~~l~~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~ 56 (570)
|.+.|...++....+|..+...+..- ...-+.+..++++.+-..+.++.+.
T Consensus 1 ~~~~~~~~~q~~~~~~q~lq~~l~~~-----~~q~~~le~q~~e~~~~~~EL~~L~ 51 (121)
T PRK09343 1 MAENIPPEVQAQLAQLQQLQQQLERL-----LQQKSQIDLELREINKALEELEKLP 51 (121)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 66678888888888888888777642 1233344444445555554444443
No 409
>PRK07774 short chain dehydrogenase; Provisional
Probab=62.76 E-value=39 Score=32.89 Aligned_cols=79 Identities=13% Similarity=0.047 Sum_probs=51.2
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc---------C
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN---------Y 467 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~---------~ 467 (570)
+.++|=.| |+|.++..+++.+ ..+.+|++++-++.........+.. ...++.++..|+.+.... .
T Consensus 6 ~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (250)
T PRK07774 6 DKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVA----DGGTAIAVQVDVSDPDSAKAMADATVSA 80 (250)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----cCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45677777 6677887777644 2357999999988766555444432 233577888998653210 0
Q ss_pred CCceeEEEECCCCC
Q psy2395 468 KKLFNIIVANPPYI 481 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~ 481 (570)
.+++|+||.|..+.
T Consensus 81 ~~~id~vi~~ag~~ 94 (250)
T PRK07774 81 FGGIDYLVNNAAIY 94 (250)
T ss_pred hCCCCEEEECCCCc
Confidence 14689999987654
No 410
>PRK08862 short chain dehydrogenase; Provisional
Probab=62.62 E-value=57 Score=31.74 Aligned_cols=77 Identities=14% Similarity=0.044 Sum_probs=49.8
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------cC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------NY 467 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~~ 467 (570)
+..+|=.|+++|. +..+++.+ ..+.+|+.++.++..++.+.+.+.. .+..+..+..|+.+... ..
T Consensus 5 ~k~~lVtGas~GI-G~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (227)
T PRK08862 5 SSIILITSAGSVL-GRTISCHFARLGATLILCDQDQSALKDTYEQCSA----LTDNVYSFQLKDFSQESIRHLFDAIEQQ 79 (227)
T ss_pred CeEEEEECCccHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh----cCCCeEEEEccCCCHHHHHHHHHHHHHH
Confidence 4678888888764 44444332 2357899999999888777665553 23456677777654211 00
Q ss_pred CC-ceeEEEECCC
Q psy2395 468 KK-LFNIIVANPP 479 (570)
Q Consensus 468 ~~-~fD~Iv~NPP 479 (570)
-+ .+|++|.|..
T Consensus 80 ~g~~iD~li~nag 92 (227)
T PRK08862 80 FNRAPDVLVNNWT 92 (227)
T ss_pred hCCCCCEEEECCc
Confidence 14 7999999974
No 411
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=62.61 E-value=55 Score=33.01 Aligned_cols=86 Identities=15% Similarity=0.206 Sum_probs=47.0
Q ss_pred CEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 452 PIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 452 ~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
++++.++|+.+.+.. ...=|+|.+||||......... ..| ....-+.+.+.++++.+..+=.+|+.+++.
T Consensus 155 ~v~i~~~Df~~~i~~-~~~~dfvYlDPPY~~~~~~~~f---~~y------~~~~f~~~dh~~L~~~l~~l~~~~~~~~lS 224 (266)
T TIGR00571 155 NTTFLCGSFEKILAM-VDDDSFVYCDPPYLPLSATYNF---TGY------HTNGFDEDEQKRLANFCKSLDERGIKFLLS 224 (266)
T ss_pred CCEEEECCHHHHHhh-cCCCCEEEECCCCCCCCCCCCc---cCc------cCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 488999999776543 2345799999999753211000 000 011123345566666555432245555543
Q ss_pred EcCCCHHHHHHHHHHCCCee
Q psy2395 532 HGYNQSNLVRKLLFKYGFSD 551 (570)
Q Consensus 532 ~~~~~~~~l~~ll~~~Gf~~ 551 (570)
. ...+.+.+++. +|..
T Consensus 225 ~--~~~~~i~ely~--~~~~ 240 (266)
T TIGR00571 225 N--SDSSFTRELYQ--GFNV 240 (266)
T ss_pred e--CCCHHHHHHhc--CCeE
Confidence 3 35567788885 5544
No 412
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.53 E-value=40 Score=32.74 Aligned_cols=79 Identities=13% Similarity=0.126 Sum_probs=51.5
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------cC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------NY 467 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~~ 467 (570)
+.++|=.|+ +|.++..+++.+ ..+.+|+.+|.++..++.+...+.. .+.++.++..|+.+... ..
T Consensus 5 ~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (253)
T PRK08217 5 DKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGA----LGTEVRGYAANVTDEEDVEATFAQIAED 79 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----cCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 567887775 566666666533 2357899999998777666555543 24467888899754211 00
Q ss_pred CCceeEEEECCCCC
Q psy2395 468 KKLFNIIVANPPYI 481 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~ 481 (570)
.+++|+||.|..+.
T Consensus 80 ~~~id~vi~~ag~~ 93 (253)
T PRK08217 80 FGQLNGLINNAGIL 93 (253)
T ss_pred cCCCCEEEECCCcc
Confidence 14689999997643
No 413
>PRK11546 zraP zinc resistance protein; Provisional
Probab=62.38 E-value=20 Score=32.67 Aligned_cols=37 Identities=16% Similarity=0.127 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHH
Q psy2395 11 KFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIV 49 (570)
Q Consensus 11 ~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v 49 (570)
++..+..||+.+++.+.. |++++.++.+|++.|...+
T Consensus 69 qL~aKr~ELnALl~~~~p--D~~kI~aL~kEI~~Lr~kL 105 (143)
T PRK11546 69 QLVSKRYEYNALLTANPP--DSSKINAVAKEMENLRQSL 105 (143)
T ss_pred HHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHHH
Confidence 345566788888988875 9999999999988888743
No 414
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=62.24 E-value=61 Score=30.79 Aligned_cols=135 Identities=19% Similarity=0.235 Sum_probs=70.0
Q ss_pred cccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHH------------HhhcccCCCCEEEEEcccccccccCCCceeE
Q psy2395 407 GSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNA------------KKKLTKYNIPIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 407 GtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~------------~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
|.|++++.+|..+ ..+.+|+|+|++++-++..++-. .++. ...++.+ ..|..+.. ...|+
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~--~~~~l~~-t~~~~~ai----~~adv 79 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENV--SAGRLRA-TTDIEEAI----KDADV 79 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHH--HTTSEEE-ESEHHHHH----HH-SE
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhcccc--ccccchh-hhhhhhhh----hccce
Confidence 5555555544322 12479999999999877655321 1100 0112222 12332212 24677
Q ss_pred EEECC--CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE--EcCCCHH-HHHHHHHHCC
Q psy2395 474 IVANP--PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE--HGYNQSN-LVRKLLFKYG 548 (570)
Q Consensus 474 Iv~NP--Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~--~~~~~~~-~l~~ll~~~G 548 (570)
++..- |+.. .+...+..+...++.+...|+++-.++++ ++.+..+ .+..++++.+
T Consensus 80 ~~I~VpTP~~~--------------------~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 80 VFICVPTPSDE--------------------DGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp EEE----EBET--------------------TTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred EEEecCCCccc--------------------cCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence 77642 3322 11223567788999999999998887774 3555555 5667777654
Q ss_pred -----CeeEE---------EEecCCCCceEEEEE
Q psy2395 549 -----FSDIK---------SWRDLSGIERVTQGK 568 (570)
Q Consensus 549 -----f~~i~---------~~~D~~g~~R~~~~~ 568 (570)
|.... .+.|+...+|+++|.
T Consensus 140 ~~~~~f~la~~PErl~~G~a~~d~~~~~rvV~G~ 173 (185)
T PF03721_consen 140 GKKEDFHLAYSPERLREGRAIEDFRNPPRVVGGC 173 (185)
T ss_dssp CTTTCEEEEE------TTSHHHHHHSSSEEEEEE
T ss_pred ccccCCeEEECCCccCCCCcchhccCCCEEEEeC
Confidence 23221 124556677777764
No 415
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=62.21 E-value=1.4e+02 Score=31.21 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=28.3
Q ss_pred CEEEEECCcccH--HHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 399 IKLLEMGTGSGA--IAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 399 ~~VLDlGcGtG~--i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~ 443 (570)
.+|.=||+|+=. ++..++.. +.+|+..|.+++.++.++..+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a---G~~V~l~D~~~~~~~~~~~~i~ 51 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH---GLDVVAWDPAPGAEAALRANVA 51 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHHHHHHH
Confidence 467788887433 23333322 5899999999999887766543
No 416
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=62.12 E-value=39 Score=33.50 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=48.1
Q ss_pred CCEEEEECCc-ccHHHHHHHHhc-CCCcEEEEEeCCH--HHHHHHHHHHHhhcccCCCCEEEEEcccccccc--------
Q psy2395 398 KIKLLEMGTG-SGAIAIAIAIYS-KNKIEIIATDISK--FALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ-------- 465 (570)
Q Consensus 398 ~~~VLDlGcG-tG~i~l~la~~~-~~~~~V~gvDis~--~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~-------- 465 (570)
+.++|=.|+| ++.++..+++.+ ..+++|+.++.+. +.++...... ..++.++..|+.+...
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~i~~~~~~~ 79 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL-------PEPAPVLELDVTNEEHLASLADRV 79 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc-------CCCCcEEeCCCCCHHHHHHHHHHH
Confidence 4688888985 677888777644 2357899888764 3333222211 2246678888865311
Q ss_pred -cCCCceeEEEECCCCC
Q psy2395 466 -NYKKLFNIIVANPPYI 481 (570)
Q Consensus 466 -~~~~~fD~Iv~NPPy~ 481 (570)
...+++|++|.|.-+.
T Consensus 80 ~~~~g~iD~li~nAG~~ 96 (256)
T PRK07889 80 REHVDGLDGVVHSIGFA 96 (256)
T ss_pred HHHcCCCcEEEEccccc
Confidence 1126799999997654
No 417
>KOG1760|consensus
Probab=62.11 E-value=91 Score=27.51 Aligned_cols=70 Identities=16% Similarity=0.141 Sum_probs=44.8
Q ss_pred ccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH---hhC-C-----------------hhHHHHHHHHHHHHH
Q psy2395 28 VHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKE---MLN-D-----------------LEMRNFALDEINLAK 86 (570)
Q Consensus 28 ~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~---l~~-D-----------------~~~~~~a~~e~~~~~ 86 (570)
.|-|+.+..+.++-+++...+-.-.+..+..+++++++.. |++ | +.+.+++++.-+.+.
T Consensus 15 t~EDQq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~ 94 (131)
T KOG1760|consen 15 TFEDQQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLE 94 (131)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHH
Confidence 4778877777777777776666667777777777776655 332 2 234555666666666
Q ss_pred HHHHHHHHHHH
Q psy2395 87 KRIFDIELEIK 97 (570)
Q Consensus 87 ~~~~~~~~~l~ 97 (570)
++++.++.++.
T Consensus 95 k~i~~les~~e 105 (131)
T KOG1760|consen 95 KEIEELESELE 105 (131)
T ss_pred HHHHHHHHHHH
Confidence 66666665543
No 418
>PRK05867 short chain dehydrogenase; Provisional
Probab=62.11 E-value=39 Score=33.12 Aligned_cols=80 Identities=14% Similarity=0.042 Sum_probs=52.2
Q ss_pred CCCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------c
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------N 466 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~ 466 (570)
.+.++|=.|+++ .++..+++.+ ..+.+|+.++.+++.++.....+.. .+.++.++.+|+.+... .
T Consensus 8 ~~k~vlVtGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (253)
T PRK05867 8 HGKRALITGAST-GIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGT----SGGKVVPVCCDVSQHQQVTSMLDQVTA 82 (253)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh----cCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 356788888754 4555555433 2357899999998877766555543 23457788899865311 0
Q ss_pred CCCceeEEEECCCCC
Q psy2395 467 YKKLFNIIVANPPYI 481 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~ 481 (570)
..+++|++|.|..+.
T Consensus 83 ~~g~id~lv~~ag~~ 97 (253)
T PRK05867 83 ELGGIDIAVCNAGII 97 (253)
T ss_pred HhCCCCEEEECCCCC
Confidence 115799999997654
No 419
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=62.08 E-value=88 Score=31.31 Aligned_cols=79 Identities=14% Similarity=0.032 Sum_probs=47.2
Q ss_pred CCEEEEECCc-ccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc---------cc
Q psy2395 398 KIKLLEMGTG-SGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL---------QN 466 (570)
Q Consensus 398 ~~~VLDlGcG-tG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l---------~~ 466 (570)
+..+|=.|++ ++.++..+++.+ ..+++|+.++.++...+.+++.... .+ .+.++..|+.+.. ..
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~----~~-~~~~~~~Dl~~~~~v~~~~~~~~~ 84 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAE----LG-AFVAGHCDVTDEASIDAVFETLEK 84 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHh----cC-CceEEecCCCCHHHHHHHHHHHHH
Confidence 4578888886 467877777654 2367888876654333333333332 12 2456788885421 11
Q ss_pred CCCceeEEEECCCCC
Q psy2395 467 YKKLFNIIVANPPYI 481 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~ 481 (570)
..++.|++|.|..+.
T Consensus 85 ~~g~iD~lv~nAG~~ 99 (272)
T PRK08159 85 KWGKLDFVVHAIGFS 99 (272)
T ss_pred hcCCCcEEEECCccc
Confidence 125799999997654
No 420
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=61.99 E-value=67 Score=31.82 Aligned_cols=79 Identities=20% Similarity=0.092 Sum_probs=44.4
Q ss_pred CCEEEEECCccc-HHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------c
Q psy2395 398 KIKLLEMGTGSG-AIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------N 466 (570)
Q Consensus 398 ~~~VLDlGcGtG-~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~ 466 (570)
+..+|=.|+++| .++..+++.+ ..+++|+.++.++...+.+++.... .+. ..++..|+.+... .
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~----~g~-~~~~~~Dv~~~~~v~~~~~~~~~ 82 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEE----IGC-NFVSELDVTNPKSISNLFDDIKE 82 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHh----cCC-ceEEEccCCCHHHHHHHHHHHHH
Confidence 457788888764 4555554433 2357898888775433333333222 121 2356788865311 1
Q ss_pred CCCceeEEEECCCCC
Q psy2395 467 YKKLFNIIVANPPYI 481 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~ 481 (570)
.-+++|++|.|..+.
T Consensus 83 ~~g~iDilVnnag~~ 97 (260)
T PRK06603 83 KWGSFDFLLHGMAFA 97 (260)
T ss_pred HcCCccEEEEccccC
Confidence 126799999987653
No 421
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=61.91 E-value=22 Score=37.28 Aligned_cols=43 Identities=33% Similarity=0.389 Sum_probs=31.5
Q ss_pred CCCCEEEEECCc-ccHHHHHHHHhcCCCc-EEEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMGTG-SGAIAIAIAIYSKNKI-EIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlGcG-tG~i~l~la~~~~~~~-~V~gvDis~~al~~A~~ 440 (570)
.++.+||=.||| .|..++.+|+.. ++ +|+++|.++.-++.+++
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~--G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALA--GASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH
Confidence 467788888875 355566667665 45 59999999998888854
No 422
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=61.24 E-value=23 Score=37.26 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=31.0
Q ss_pred CCCCEEEEECCc-ccHHHHHHHHhcCCCc-EEEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMGTG-SGAIAIAIAIYSKNKI-EIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlGcG-tG~i~l~la~~~~~~~-~V~gvDis~~al~~A~~ 440 (570)
.++.+||=.|+| .|.+++.+|+.. ++ +|+++|.++.-++.+++
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAA--GASQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHH
Confidence 456788888875 355556666655 45 69999999998888864
No 423
>PRK05854 short chain dehydrogenase; Provisional
Probab=61.11 E-value=88 Score=32.10 Aligned_cols=81 Identities=7% Similarity=0.063 Sum_probs=51.7
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------cC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------NY 467 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~~ 467 (570)
+.+++=.|++ |.++..+++.+ ..+++|+.+.-+++..+.+...+... ..+.++.++..|+.+... ..
T Consensus 14 gk~~lITGas-~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~--~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 14 GKRAVVTGAS-DGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTA--VPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh--CCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 5577777765 45666666543 23579999999888776665555432 123368899999865211 11
Q ss_pred CCceeEEEECCCCC
Q psy2395 468 KKLFNIIVANPPYI 481 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~ 481 (570)
.++.|++|.|....
T Consensus 91 ~~~iD~li~nAG~~ 104 (313)
T PRK05854 91 GRPIHLLINNAGVM 104 (313)
T ss_pred CCCccEEEECCccc
Confidence 25799999997543
No 424
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=61.04 E-value=20 Score=27.98 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCccccC-CHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy2395 4 LMLSKLEKFSKRLKELDFLLTQKEVHN-NIKDYCKKVREHSFLYPIVELYNNYKKINED 61 (570)
Q Consensus 4 ~~~~~l~~~~~r~~~l~~~l~~p~~w~-d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d 61 (570)
.+...++.+.+.+..++..|++|+|.. -|. .-+.++...|...-..+..+...+..
T Consensus 8 rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~--eVve~er~kl~~~~~~~~~l~~~l~~ 64 (66)
T PF10458_consen 8 RLEKELEKLEKEIERLEKKLSNENFVEKAPE--EVVEKEREKLEELEEELEKLEEALEQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSTTHHHHS-C--CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccccccCCH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 477889999999999999999999852 222 22344555555555555555544443
No 425
>PRK08265 short chain dehydrogenase; Provisional
Probab=60.97 E-value=43 Score=33.19 Aligned_cols=76 Identities=13% Similarity=0.041 Sum_probs=47.5
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------cC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------NY 467 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~~ 467 (570)
+.++|=.|+ +|.++..+++.+ ..+++|+.+|.++..++..... .+.++.++.+|+.+... ..
T Consensus 6 ~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 6 GKVAIVTGG-ATLIGAAVARALVAAGARVAIVDIDADNGAAVAAS-------LGERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------hCCeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 457777774 555766666543 2357999999987654433222 13357888999865311 00
Q ss_pred CCceeEEEECCCCC
Q psy2395 468 KKLFNIIVANPPYI 481 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~ 481 (570)
.++.|++|.|..+.
T Consensus 78 ~g~id~lv~~ag~~ 91 (261)
T PRK08265 78 FGRVDILVNLACTY 91 (261)
T ss_pred hCCCCEEEECCCCC
Confidence 14689999997653
No 426
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=60.44 E-value=30 Score=35.70 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=31.5
Q ss_pred CEEEEECC--cccHHHHHHHHhcCCCc-EEEEEeCCHHHHHHHHHH
Q psy2395 399 IKLLEMGT--GSGAIAIAIAIYSKNKI-EIIATDISKFALKIAKKN 441 (570)
Q Consensus 399 ~~VLDlGc--GtG~i~l~la~~~~~~~-~V~gvDis~~al~~A~~n 441 (570)
.+||=.|+ |.|..++.+|+.. ++ +|++++.+++-.+.+++.
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~ 199 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSE 199 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHh
Confidence 68888875 5777788888776 46 799999998877776653
No 427
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=59.66 E-value=81 Score=31.19 Aligned_cols=79 Identities=19% Similarity=0.118 Sum_probs=46.4
Q ss_pred CCEEEEECCc-ccHHHHHHHHhc-CCCcEEEEEeCCHHH---HHHHHHHHHhhcccCCCCEEEEEcccccccc-------
Q psy2395 398 KIKLLEMGTG-SGAIAIAIAIYS-KNKIEIIATDISKFA---LKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ------- 465 (570)
Q Consensus 398 ~~~VLDlGcG-tG~i~l~la~~~-~~~~~V~gvDis~~a---l~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~------- 465 (570)
+..+|=.|++ ++.++..+++.+ ..+++|+.++.+.+. .+.+.+ +.. ...++.++..|+.+...
T Consensus 6 ~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~Dl~d~~~v~~~~~~ 80 (258)
T PRK07370 6 GKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRE-LTE----PLNPSLFLPCDVQDDAQIEETFET 80 (258)
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHH-HHh----ccCcceEeecCcCCHHHHHHHHHH
Confidence 5678889985 677888887654 235788777654321 111222 111 11235677888854211
Q ss_pred --cCCCceeEEEECCCCC
Q psy2395 466 --NYKKLFNIIVANPPYI 481 (570)
Q Consensus 466 --~~~~~fD~Iv~NPPy~ 481 (570)
...+++|++|.|..+.
T Consensus 81 ~~~~~g~iD~lv~nag~~ 98 (258)
T PRK07370 81 IKQKWGKLDILVHCLAFA 98 (258)
T ss_pred HHHHcCCCCEEEEccccc
Confidence 1125799999997654
No 428
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=59.32 E-value=58 Score=33.47 Aligned_cols=42 Identities=33% Similarity=0.514 Sum_probs=31.4
Q ss_pred CCCEEEEECCcc-cHHHHHHHHhcCCCc-EEEEEeCCHHHHHHHHH
Q psy2395 397 KKIKLLEMGTGS-GAIAIAIAIYSKNKI-EIIATDISKFALKIAKK 440 (570)
Q Consensus 397 ~~~~VLDlGcGt-G~i~l~la~~~~~~~-~V~gvDis~~al~~A~~ 440 (570)
++.+||-.|||. |..++.+++.. +. +|++++.++...+.+++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~--G~~~v~~~~~s~~~~~~~~~ 208 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA--GAAEIVATDLADAPLAVARA 208 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH
Confidence 567888888875 66777777765 45 79999999888776543
No 429
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=59.06 E-value=28 Score=32.17 Aligned_cols=108 Identities=13% Similarity=0.089 Sum_probs=56.4
Q ss_pred EEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCC
Q psy2395 401 LLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPP 479 (570)
Q Consensus 401 VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPP 479 (570)
|-=||+ |.++..+++.+ ..+..|++.|.+++.++..... + +.. ..+..+.. ...|+|++.-|
T Consensus 4 Ig~IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~--------g--~~~-~~s~~e~~----~~~dvvi~~v~ 66 (163)
T PF03446_consen 4 IGFIGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA--------G--AEV-ADSPAEAA----EQADVVILCVP 66 (163)
T ss_dssp EEEE----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT--------T--EEE-ESSHHHHH----HHBSEEEE-SS
T ss_pred EEEEch--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh--------h--hhh-hhhhhhHh----hcccceEeecc
Confidence 334555 56666666543 2357999999999776654422 1 222 22332222 34699998533
Q ss_pred CCCCCCcccCCCCccccccccccccCCChHHHHHHHHH--HhhccccCeEEEEEEcCC---CHHHHHHHHHHCCCeeEE
Q psy2395 480 YIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKN--ASKYLVKNGLLLIEHGYN---QSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 480 y~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~--~~~~LkpgG~l~~~~~~~---~~~~l~~ll~~~Gf~~i~ 553 (570)
- -...+.++.. +...|++|.. ++.++.. ....+.+.+...|...+.
T Consensus 67 ~---------------------------~~~v~~v~~~~~i~~~l~~g~i-iid~sT~~p~~~~~~~~~~~~~g~~~vd 117 (163)
T PF03446_consen 67 D---------------------------DDAVEAVLFGENILAGLRPGKI-IIDMSTISPETSRELAERLAAKGVRYVD 117 (163)
T ss_dssp S---------------------------HHHHHHHHHCTTHGGGS-TTEE-EEE-SS--HHHHHHHHHHHHHTTEEEEE
T ss_pred c---------------------------chhhhhhhhhhHHhhccccceE-EEecCCcchhhhhhhhhhhhhccceeee
Confidence 1 0233555555 5666766554 4555443 345566667777865543
No 430
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=58.83 E-value=3.1e+02 Score=30.92 Aligned_cols=101 Identities=11% Similarity=0.034 Sum_probs=54.0
Q ss_pred HHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHhh----CChhHHHHHHHHHHHHHHHHHHHH
Q psy2395 19 LDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYN-NYKKINEDIITAKEML----NDLEMRNFALDEINLAKKRIFDIE 93 (570)
Q Consensus 19 l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~-~~~~~~~d~~~~~~l~----~D~~~~~~a~~e~~~~~~~~~~~~ 93 (570)
|...+++-++ ||.+...+..++..+......|. .+......++++..-+ +..+-.+.++++++.+.+++.++-
T Consensus 289 l~~~~~~l~~--dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a 366 (563)
T TIGR00634 289 LQNYLDELEF--DPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAA 366 (563)
T ss_pred HHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333343344 99999999999888888777775 2222222233222222 233334445555555555555443
Q ss_pred HHHHHhcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCE
Q psy2395 94 LEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWK 145 (570)
Q Consensus 94 ~~l~~~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~ 145 (570)
.+|-... ..+|..|......+....|+.
T Consensus 367 ~~Ls~~R------------------------~~~a~~l~~~v~~~l~~L~m~ 394 (563)
T TIGR00634 367 VALSLIR------------------------RKAAERLAKRVEQELKALAME 394 (563)
T ss_pred HHHHHHH------------------------HHHHHHHHHHHHHHHHhCCCC
Confidence 3332111 245666666666776665543
No 431
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=58.40 E-value=59 Score=31.64 Aligned_cols=76 Identities=17% Similarity=0.192 Sum_probs=49.4
Q ss_pred EEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc---------ccCCC
Q psy2395 400 KLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL---------QNYKK 469 (570)
Q Consensus 400 ~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l---------~~~~~ 469 (570)
++|=.| |+|.++..+++.+ ..+.+|++++.++...+.+...... .+.++.++.+|+.+.. .....
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATD----AGGSVIYLVADVTKEDEIADMIAAAAAEFG 77 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----cCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 455555 6777888877553 2357899999988766555544432 2346888999986532 11124
Q ss_pred ceeEEEECCCC
Q psy2395 470 LFNIIVANPPY 480 (570)
Q Consensus 470 ~fD~Iv~NPPy 480 (570)
..|+||.|.-+
T Consensus 78 ~~d~vi~~a~~ 88 (255)
T TIGR01963 78 GLDILVNNAGI 88 (255)
T ss_pred CCCEEEECCCC
Confidence 68999998644
No 432
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=58.33 E-value=61 Score=31.39 Aligned_cols=79 Identities=18% Similarity=0.104 Sum_probs=51.2
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------cC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------NY 467 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~~ 467 (570)
+.+||=.| |+|.++..+++.+ ..+++|++++-++..+..+...+.. ...++.++.+|+.+... ..
T Consensus 6 ~~~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12826 6 GRVALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEA----AGGKARARQVDVRDRAALKAAVAAGVED 80 (251)
T ss_pred CCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----cCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45787666 4677777776543 2257899999998766655554443 23458899999865311 00
Q ss_pred CCceeEEEECCCCC
Q psy2395 468 KKLFNIIVANPPYI 481 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~ 481 (570)
.+++|+|+.++.+.
T Consensus 81 ~~~~d~vi~~ag~~ 94 (251)
T PRK12826 81 FGRLDILVANAGIF 94 (251)
T ss_pred hCCCCEEEECCCCC
Confidence 13689999987654
No 433
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=58.31 E-value=3.1e+02 Score=30.81 Aligned_cols=135 Identities=16% Similarity=0.098 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHhh----CChhHHHHHHHHH
Q psy2395 8 KLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNN-YKKINEDIITAKEML----NDLEMRNFALDEI 82 (570)
Q Consensus 8 ~l~~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~-~~~~~~d~~~~~~l~----~D~~~~~~a~~e~ 82 (570)
-+-.+.+=..+|+..+.+-+| ||.+..++..++..|..+...|.. .....+..+.+.+-+ +..+-.+.++.++
T Consensus 274 a~~~l~ea~~el~~~~~~le~--Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~ 351 (557)
T COG0497 274 ALYELEEASEELRAYLDELEF--DPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEV 351 (557)
T ss_pred HHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 444555556677777888777 999999999999999888888766 444444444333333 2223244455555
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHH-----HhcCCEEEEEEeccc-CC
Q psy2395 83 NLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFS-----ERNYWKFEIISRSLS-EI 156 (570)
Q Consensus 83 ~~~~~~~~~~~~~l~~~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~-----~~~~~~~~~~~~~~~-~~ 156 (570)
..+..++.+.-++|-... +.+|..|-.-..... ++-.|.+++-..... ..
T Consensus 352 ~~l~~~~~~~A~~Ls~~R------------------------~~~A~~L~~~v~~eL~~L~Me~a~F~ve~~~~~~~~t~ 407 (557)
T COG0497 352 KKLKAELLEAAEALSAIR------------------------KKAAKELEKEVTAELKALAMEKARFTVELKPLEESPTA 407 (557)
T ss_pred HHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCc
Confidence 555555554433332111 123333333333322 334566665543321 34
Q ss_pred CCceEEEEEEec
Q psy2395 157 GGYKEIIARIIG 168 (570)
Q Consensus 157 ~g~~~~~~~~~g 168 (570)
.|+-.|.|.|+.
T Consensus 408 ~G~d~VeF~ist 419 (557)
T COG0497 408 DGADKVEFLIST 419 (557)
T ss_pred CCcceEEEEEeC
Confidence 588899988864
No 434
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=58.28 E-value=52 Score=32.23 Aligned_cols=80 Identities=11% Similarity=0.035 Sum_probs=52.8
Q ss_pred CCCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------c
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------N 466 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~ 466 (570)
.+.++|=.|+ +|.++..+++.+ ..+++|+.++.+++.+......+.. .+.++.++.+|+.+... .
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRA----AGGAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHh----cCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 4567887774 566777666543 2367999999998777665555543 34458889999865311 1
Q ss_pred CCCceeEEEECCCCC
Q psy2395 467 YKKLFNIIVANPPYI 481 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~ 481 (570)
.-+++|.+|.|..+.
T Consensus 85 ~~~~id~vi~~ag~~ 99 (256)
T PRK06124 85 EHGRLDILVNNVGAR 99 (256)
T ss_pred hcCCCCEEEECCCCC
Confidence 114689999987653
No 435
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=57.74 E-value=98 Score=32.96 Aligned_cols=61 Identities=13% Similarity=0.245 Sum_probs=43.7
Q ss_pred CCCEEEEECCcccHHHHHHHHh------cCCCcEEEEEeC----CHHHHHHHHHHHHhhcccCCCCEEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIY------SKNKIEIIATDI----SKFALKIAKKNAKKKLTKYNIPIKFIK 457 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~------~~~~~~V~gvDi----s~~al~~A~~n~~~~~~~~~~~v~~~~ 457 (570)
+...|+|+|.|.|.--..|.+. +|+..+||||+. +...++.+.+++.......+...+|..
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~ 180 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHP 180 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEe
Confidence 5668999999999865555432 245689999999 888898888887654333455555544
No 436
>PRK07035 short chain dehydrogenase; Provisional
Probab=57.65 E-value=56 Score=31.90 Aligned_cols=79 Identities=14% Similarity=0.022 Sum_probs=49.8
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------cC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------NY 467 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~~ 467 (570)
+.++|=.|+++ .++..+++.+ ..+++|++++.++..++...+.+.. .+.++.++..|+.+... ..
T Consensus 8 ~k~vlItGas~-gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (252)
T PRK07035 8 GKIALVTGASR-GIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVA----AGGKAEALACHIGEMEQIDALFAHIRER 82 (252)
T ss_pred CCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45677777664 4555555433 2357999999998877666555543 23457788888854311 00
Q ss_pred CCceeEEEECCCCC
Q psy2395 468 KKLFNIIVANPPYI 481 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~ 481 (570)
-+++|+++.|..+.
T Consensus 83 ~~~id~li~~ag~~ 96 (252)
T PRK07035 83 HGRLDILVNNAAAN 96 (252)
T ss_pred cCCCCEEEECCCcC
Confidence 14689999987654
No 437
>PRK07102 short chain dehydrogenase; Provisional
Probab=57.43 E-value=50 Score=32.14 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=50.5
Q ss_pred EEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc------cCCCcee
Q psy2395 400 KLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ------NYKKLFN 472 (570)
Q Consensus 400 ~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~------~~~~~fD 472 (570)
+++-.| |+|.++..+++.+ ..+.+|++++.++...+....++... .+.++.++.+|+.+... .....+|
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRAR---GAVAVSTHELDILDTASHAAFLDSLPALPD 78 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh---cCCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence 577667 5577777766544 23578999999987766554444331 23468899999865321 1113579
Q ss_pred EEEECCCCC
Q psy2395 473 IIVANPPYI 481 (570)
Q Consensus 473 ~Iv~NPPy~ 481 (570)
+++.|..+.
T Consensus 79 ~vv~~ag~~ 87 (243)
T PRK07102 79 IVLIAVGTL 87 (243)
T ss_pred EEEECCcCC
Confidence 999987543
No 438
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=57.25 E-value=54 Score=35.46 Aligned_cols=66 Identities=12% Similarity=0.204 Sum_probs=43.3
Q ss_pred EEEEECCcccHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc--ccC-CCceeEEE
Q psy2395 400 KLLEMGTGSGAIAIAIAIYSK-NKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL--QNY-KKLFNIIV 475 (570)
Q Consensus 400 ~VLDlGcGtG~i~l~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l--~~~-~~~fD~Iv 475 (570)
+|+=+| .|.++..+++... .+..|+.+|.+++.++.++... .+.++.+|..+.. ... -..+|.|+
T Consensus 2 ~viIiG--~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~---------~~~~~~gd~~~~~~l~~~~~~~a~~vi 70 (453)
T PRK09496 2 KIIIVG--AGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL---------DVRTVVGNGSSPDVLREAGAEDADLLI 70 (453)
T ss_pred EEEEEC--CCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc---------CEEEEEeCCCCHHHHHHcCCCcCCEEE
Confidence 345555 4788888876442 2578999999999877665421 2678888886532 111 24688888
Q ss_pred E
Q psy2395 476 A 476 (570)
Q Consensus 476 ~ 476 (570)
+
T Consensus 71 ~ 71 (453)
T PRK09496 71 A 71 (453)
T ss_pred E
Confidence 7
No 439
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=56.94 E-value=35 Score=26.27 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCEEEEEEecccCCCCceEEEEEEec
Q psy2395 133 RMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIG 168 (570)
Q Consensus 133 ~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g 168 (570)
.-....+.++||.++.+...+.+..|+..+++.+.|
T Consensus 7 ~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~ 42 (63)
T PF13710_consen 7 NRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG 42 (63)
T ss_dssp HHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES
T ss_pred HHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee
Confidence 344566789999999999999888999999999999
No 440
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=56.86 E-value=1.2e+02 Score=32.89 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy2395 5 MLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKIN 59 (570)
Q Consensus 5 ~~~~l~~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~ 59 (570)
+..+++.+++-.++|.+....=.+=..+.+...+.++++.+..-+..++.+-...
T Consensus 218 Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~ 272 (424)
T PF03915_consen 218 LLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTE 272 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677777777777777777766666688888888888888877777776664443
No 441
>KOG1201|consensus
Probab=56.81 E-value=51 Score=33.79 Aligned_cols=76 Identities=22% Similarity=0.187 Sum_probs=55.9
Q ss_pred CCCEEEEECCcccH---HHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc---------
Q psy2395 397 KKIKLLEMGTGSGA---IAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL--------- 464 (570)
Q Consensus 397 ~~~~VLDlGcGtG~---i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l--------- 464 (570)
.+..||==|.|+|. ++..+|++ ++++...|+++.......+.++.+ + ++..+..|+.+..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r---g~~~vl~Din~~~~~etv~~~~~~----g-~~~~y~cdis~~eei~~~a~~V 108 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR---GAKLVLWDINKQGNEETVKEIRKI----G-EAKAYTCDISDREEIYRLAKKV 108 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh---CCeEEEEeccccchHHHHHHHHhc----C-ceeEEEecCCCHHHHHHHHHHH
Confidence 46788988988883 45555554 368999999999999888888763 3 6889999986531
Q ss_pred ccCCCceeEEEECCCC
Q psy2395 465 QNYKKLFNIIVANPPY 480 (570)
Q Consensus 465 ~~~~~~fD~Iv~NPPy 480 (570)
...-+..|++|.|.--
T Consensus 109 k~e~G~V~ILVNNAGI 124 (300)
T KOG1201|consen 109 KKEVGDVDILVNNAGI 124 (300)
T ss_pred HHhcCCceEEEecccc
Confidence 1112689999999543
No 442
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=56.79 E-value=23 Score=35.66 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=30.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcC----CCcEEEEEeCCH
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSK----NKIEIIATDISK 432 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~----~~~~V~gvDis~ 432 (570)
.+...++|+|||.|.++..++...+ +...++.||-..
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 5667999999999999999998762 246899999855
No 443
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=56.52 E-value=59 Score=32.18 Aligned_cols=80 Identities=21% Similarity=0.159 Sum_probs=52.5
Q ss_pred CCCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------c
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------N 466 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~ 466 (570)
.+.++|-.|+++| ++..+++.+ ..+++|+.++.++..++.+..+... .+.++.++.+|+.+... .
T Consensus 9 ~~k~~lItGa~~~-iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (265)
T PRK07097 9 KGKIALITGASYG-IGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRE----LGIEAHGYVCDVTDEDGVQAMVSQIEK 83 (265)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh----cCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 3567888887754 455544332 2357899999998887766666553 34468889999865321 0
Q ss_pred CCCceeEEEECCCCC
Q psy2395 467 YKKLFNIIVANPPYI 481 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~ 481 (570)
.-+++|++|.|..+.
T Consensus 84 ~~~~id~li~~ag~~ 98 (265)
T PRK07097 84 EVGVIDILVNNAGII 98 (265)
T ss_pred hCCCCCEEEECCCCC
Confidence 014689999997654
No 444
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=56.33 E-value=52 Score=33.12 Aligned_cols=83 Identities=10% Similarity=0.099 Sum_probs=59.5
Q ss_pred hHHHHHHHHHhhcC--------CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCE
Q psy2395 382 ETELLVDLIVKKTF--------EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPI 453 (570)
Q Consensus 382 ~t~~l~~~~~~~~~--------~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v 453 (570)
.|-.|-+.+...++ .++....|+|+-.|..+-.|.++ +..|++||.-+-+-. +- ....|
T Consensus 188 StLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~ma~s-----L~-----dtg~v 254 (358)
T COG2933 188 STLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGPMAQS-----LM-----DTGQV 254 (358)
T ss_pred hhhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhc---ceEEEEeccchhhhh-----hh-----cccce
Confidence 44455555554433 36789999999999999999865 479999998664421 11 34468
Q ss_pred EEEEcccccccccCCCceeEEEECC
Q psy2395 454 KFIKSNWYNNLQNYKKLFNIIVANP 478 (570)
Q Consensus 454 ~~~~~D~~~~l~~~~~~fD~Iv~NP 478 (570)
+....|-+..-+. ..+.|-.||+.
T Consensus 255 ~h~r~DGfk~~P~-r~~idWmVCDm 278 (358)
T COG2933 255 THLREDGFKFRPT-RSNIDWMVCDM 278 (358)
T ss_pred eeeeccCcccccC-CCCCceEEeeh
Confidence 8899999887662 46899999964
No 445
>PLN02253 xanthoxin dehydrogenase
Probab=56.25 E-value=42 Score=33.49 Aligned_cols=77 Identities=14% Similarity=0.069 Sum_probs=49.3
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------cC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------NY 467 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~~ 467 (570)
+.++|=.| |+|.++..+++.+ ..+++|+.+|.++...+.....+. ...++.++.+|+.+... ..
T Consensus 18 ~k~~lItG-as~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 91 (280)
T PLN02253 18 GKVALVTG-GATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG-----GEPNVCFFHCDVTVEDDVSRAVDFTVDK 91 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc-----CCCceEEEEeecCCHHHHHHHHHHHHHH
Confidence 45777777 5667777777544 235799999998776544433321 23458889999865311 00
Q ss_pred CCceeEEEECCCC
Q psy2395 468 KKLFNIIVANPPY 480 (570)
Q Consensus 468 ~~~fD~Iv~NPPy 480 (570)
.++.|++|.|...
T Consensus 92 ~g~id~li~~Ag~ 104 (280)
T PLN02253 92 FGTLDIMVNNAGL 104 (280)
T ss_pred hCCCCEEEECCCc
Confidence 1468999998643
No 446
>PRK07677 short chain dehydrogenase; Provisional
Probab=56.21 E-value=50 Score=32.38 Aligned_cols=76 Identities=16% Similarity=0.153 Sum_probs=47.8
Q ss_pred CEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------cCC
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------NYK 468 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~~~ 468 (570)
.++|-.|++.| ++..+++.+ ..+++|++++.++..++.+...+.. .+.++.++.+|+.+... ..-
T Consensus 2 k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (252)
T PRK07677 2 KVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQ----FPGQVLTVQMDVRNPEDVQKMVEQIDEKF 76 (252)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----cCCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 46777776544 655555432 2357899999998777665554443 23468889999854211 001
Q ss_pred CceeEEEECCC
Q psy2395 469 KLFNIIVANPP 479 (570)
Q Consensus 469 ~~fD~Iv~NPP 479 (570)
++.|++|.|..
T Consensus 77 ~~id~lI~~ag 87 (252)
T PRK07677 77 GRIDALINNAA 87 (252)
T ss_pred CCccEEEECCC
Confidence 46899999854
No 447
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=55.86 E-value=33 Score=34.37 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=21.4
Q ss_pred HHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 411 IAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 411 i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
++..|.+.++ ..+|+|+|.++..++.|.+
T Consensus 1 ~A~aL~~~g~-~~~v~g~d~~~~~~~~a~~ 29 (258)
T PF02153_consen 1 IALALRKAGP-DVEVYGYDRDPETLEAALE 29 (258)
T ss_dssp HHHHHHHTTT-TSEEEEE-SSHHHHHHHHH
T ss_pred ChHHHHhCCC-CeEEEEEeCCHHHHHHHHH
Confidence 4566666654 5899999999999888853
No 448
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=55.56 E-value=61 Score=31.86 Aligned_cols=78 Identities=13% Similarity=0.196 Sum_probs=46.9
Q ss_pred CCCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------c
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------N 466 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~ 466 (570)
.+.++|-.|++ |.++..+++.+ ..+++|+.++.++. +.+...... .+.++.++..|+.+... .
T Consensus 7 ~~k~~lItGas-~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12481 7 NGKVAIITGCN-TGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEA----LGRKFHFITADLIQQKDIDSIVSQAVE 79 (251)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHH----cCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence 35688888865 45666666443 23678998876542 222223332 24468888999865311 0
Q ss_pred CCCceeEEEECCCCC
Q psy2395 467 YKKLFNIIVANPPYI 481 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~ 481 (570)
..+++|++|.|..+.
T Consensus 80 ~~g~iD~lv~~ag~~ 94 (251)
T PRK12481 80 VMGHIDILINNAGII 94 (251)
T ss_pred HcCCCCEEEECCCcC
Confidence 115799999997654
No 449
>PRK08251 short chain dehydrogenase; Provisional
Probab=55.35 E-value=76 Score=30.82 Aligned_cols=80 Identities=13% Similarity=0.030 Sum_probs=52.4
Q ss_pred CEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------cCC
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------NYK 468 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~~~ 468 (570)
.++|=.| |+|.++..+++.+ ..+.+|+.++.++..++.....+... ..+.++.++.+|+.+... ..-
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLAR--YPGIKVAVAALDVNDHDQVFEVFAEFRDEL 79 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhh--CCCceEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4677777 5677887777554 23578999999988777665554431 124468899999865321 111
Q ss_pred CceeEEEECCCCC
Q psy2395 469 KLFNIIVANPPYI 481 (570)
Q Consensus 469 ~~fD~Iv~NPPy~ 481 (570)
+..|++|.|..+.
T Consensus 80 ~~id~vi~~ag~~ 92 (248)
T PRK08251 80 GGLDRVIVNAGIG 92 (248)
T ss_pred CCCCEEEECCCcC
Confidence 4689999986543
No 450
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=55.02 E-value=42 Score=35.70 Aligned_cols=42 Identities=19% Similarity=0.114 Sum_probs=28.8
Q ss_pred CCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 397 KKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 397 ~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
++.+|+=+|+| .|..++..++.. +++|+.+|.++..++.+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~ 208 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDA 208 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHH
Confidence 34578888887 455555555554 4689999999887665543
No 451
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=54.88 E-value=2.3e+02 Score=28.72 Aligned_cols=57 Identities=9% Similarity=0.085 Sum_probs=37.9
Q ss_pred cCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy2395 24 TQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLIL 101 (570)
Q Consensus 24 ~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~~D~~~~~~a~~e~~~~~~~~~~~~~~l~~~ll 101 (570)
.||.+|-||..++.+.+.++ +.+.+ -||+-.+.-++-.+.+.++++++.+++...+-
T Consensus 119 ~dPHiWldp~n~~~~a~~I~------~~L~~---------------~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~~~ 175 (286)
T cd01019 119 LDPHLWLSPENAAEVAQAVA------EKLSA---------------LDPDNAATYAANLEAFNARLAELDATIKERLA 175 (286)
T ss_pred CCCccCCCHHHHHHHHHHHH------HHHHH---------------HCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 38999999998877655321 11111 16666667777777778888887777766554
No 452
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=54.73 E-value=74 Score=35.82 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=15.0
Q ss_pred chHHHHHHHHHHHHHHHHH
Q psy2395 121 GDESALFVNDLLRMYIRFS 139 (570)
Q Consensus 121 g~E~~~~~~~l~~~y~~~~ 139 (570)
|.|...|+..++..|.+..
T Consensus 287 g~~i~~~~~~~~~~y~~~~ 305 (555)
T TIGR03545 287 GPEIRKYLQKFLKYYDQAE 305 (555)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 7888888888888887733
No 453
>PRK08339 short chain dehydrogenase; Provisional
Probab=54.34 E-value=63 Score=32.08 Aligned_cols=79 Identities=14% Similarity=0.131 Sum_probs=50.3
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc--------CC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN--------YK 468 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~--------~~ 468 (570)
+.++|=.|+++| ++..+++.+ ..+++|+.++.++..++.+...+... .+.++.++.+|+.+.... ..
T Consensus 8 ~k~~lItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 8 GKLAFTTASSKG-IGFGVARVLARAGADVILLSRNEENLKKAREKIKSE---SNVDVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCEEEEeCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh---cCCceEEEEecCCCHHHHHHHHHHHHhh
Confidence 457777776654 555555433 23579999999988777666555431 234688889998653110 01
Q ss_pred CceeEEEECCCC
Q psy2395 469 KLFNIIVANPPY 480 (570)
Q Consensus 469 ~~fD~Iv~NPPy 480 (570)
+.+|++|.|.-.
T Consensus 84 g~iD~lv~nag~ 95 (263)
T PRK08339 84 GEPDIFFFSTGG 95 (263)
T ss_pred CCCcEEEECCCC
Confidence 468999998643
No 454
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=54.33 E-value=27 Score=30.51 Aligned_cols=62 Identities=23% Similarity=0.262 Sum_probs=42.9
Q ss_pred CCEEEEECCcccH-HHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 398 KIKLLEMGTGSGA-IAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 398 ~~~VLDlGcGtG~-i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
..+|.++|.|-=. .+-.|+++ +..|+++||++. ++. ..+.++..|++++-...-...|+|.|
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~-------~a~-------~g~~~v~DDitnP~~~iY~~A~lIYS 76 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER---GFDVLATDINEK-------TAP-------EGLRFVVDDITNPNISIYEGADLIYS 76 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc---CCcEEEEecccc-------cCc-------ccceEEEccCCCccHHHhhCccceee
Confidence 4599999987532 34445544 478999999987 222 23789999998854433356899988
No 455
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=54.01 E-value=67 Score=33.13 Aligned_cols=44 Identities=11% Similarity=0.117 Sum_probs=34.0
Q ss_pred CCCCEEEEECC--cccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 396 EKKIKLLEMGT--GSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 396 ~~~~~VLDlGc--GtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
.++.+||=.|+ |.|.+++.+|+.. +.+|++++.+++-.+.++..
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~ 195 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNK 195 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh
Confidence 46778888886 5677777888776 57899999998887777653
No 456
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=53.54 E-value=50 Score=34.02 Aligned_cols=43 Identities=30% Similarity=0.327 Sum_probs=29.6
Q ss_pred CCCCEEEEECCc-ccHHHHHHHHhcCCCcE-EEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMGTG-SGAIAIAIAIYSKNKIE-IIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlGcG-tG~i~l~la~~~~~~~~-V~gvDis~~al~~A~~ 440 (570)
.++.+||=.|+| .|.+++.+++.. +++ |+++|.+++-.+.+++
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~ 206 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARAL--GAEDVIGVDPSPERLELAKA 206 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence 457788888764 344455566655 456 9999999988877753
No 457
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=53.40 E-value=77 Score=31.05 Aligned_cols=79 Identities=9% Similarity=0.039 Sum_probs=49.8
Q ss_pred CEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCC-CCEEEEEcccccccc---------cC
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYN-IPIKFIKSNWYNNLQ---------NY 467 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~-~~v~~~~~D~~~~l~---------~~ 467 (570)
.+||=.| |+|.++..+++.+ ..+++|+.+|.++..++.....+... .+ .++.++.+|+.+... ..
T Consensus 3 k~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 78 (259)
T PRK12384 3 QVAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAE---YGEGMAYGFGADATSEQSVLALSRGVDEI 78 (259)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh---cCCceeEEEEccCCCHHHHHHHHHHHHHH
Confidence 4677777 5677777766544 23579999999887665544443321 12 358889999865211 01
Q ss_pred CCceeEEEECCCCC
Q psy2395 468 KKLFNIIVANPPYI 481 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~ 481 (570)
.++.|+||.|..+.
T Consensus 79 ~~~id~vv~~ag~~ 92 (259)
T PRK12384 79 FGRVDLLVYNAGIA 92 (259)
T ss_pred cCCCCEEEECCCcC
Confidence 14689999986543
No 458
>COG4353 Uncharacterized conserved protein [Function unknown]
Probab=53.31 E-value=27 Score=32.21 Aligned_cols=52 Identities=23% Similarity=0.289 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhccccCeEEEEEEcCCC-------------HHHHHHHHHHCCCeeEEEEecCCC
Q psy2395 509 SSIKEIVKNASKYLVKNGLLLIEHGYNQ-------------SNLVRKLLFKYGFSDIKSWRDLSG 560 (570)
Q Consensus 509 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~-------------~~~l~~ll~~~Gf~~i~~~~D~~g 560 (570)
+.-..++..++++|.|||.++++.-.+. ...+--.|.++||+..+-|.---|
T Consensus 70 ~~E~~l~~~l~~~lspg~~lfVeYv~DrET~~~lqkG~~p~atrLGfeL~k~GftwfkdWY~PEG 134 (192)
T COG4353 70 ELEVKLYKVLYNFLSPGGKLFVEYVRDRETRYRLQKGKPPVATRLGFELLKAGFTWFKDWYFPEG 134 (192)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEEechhHHHHHHcCCCCccchhhHHHHhCcceeeeeeeccCc
Confidence 4457888999999999999998764332 223444567889998877765433
No 459
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=53.24 E-value=95 Score=31.48 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=26.4
Q ss_pred EEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHH
Q psy2395 400 KLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNA 442 (570)
Q Consensus 400 ~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~ 442 (570)
+|.=+|+| .++..+|..+ ..+.+|+.+|.+++.++.+..+.
T Consensus 3 ~V~VIG~G--~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~ 44 (288)
T PRK09260 3 KLVVVGAG--VMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEI 44 (288)
T ss_pred EEEEECcc--HHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Confidence 46666775 3333333221 12468999999999999887654
No 460
>PRK07890 short chain dehydrogenase; Provisional
Probab=53.16 E-value=66 Score=31.45 Aligned_cols=78 Identities=8% Similarity=0.045 Sum_probs=50.5
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------cC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------NY 467 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~~ 467 (570)
+.+||=.|+ +|.++..+++.+ ..+++|+.++.++..++.+...+.. .+.++.++..|+.+... ..
T Consensus 5 ~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 5 GKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDD----LGRRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH----hCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 457776665 556766666543 2357999999998776655544442 24468889999864311 00
Q ss_pred CCceeEEEECCCC
Q psy2395 468 KKLFNIIVANPPY 480 (570)
Q Consensus 468 ~~~fD~Iv~NPPy 480 (570)
-+.+|+||.|..+
T Consensus 80 ~g~~d~vi~~ag~ 92 (258)
T PRK07890 80 FGRVDALVNNAFR 92 (258)
T ss_pred cCCccEEEECCcc
Confidence 1468999998644
No 461
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.13 E-value=62 Score=31.23 Aligned_cols=78 Identities=21% Similarity=0.135 Sum_probs=51.3
Q ss_pred CEEEEECCcccHHHHHHHHhc-CCCcEEEEE-eCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc---------C
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYS-KNKIEIIAT-DISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN---------Y 467 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~-~~~~~V~gv-Dis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~---------~ 467 (570)
.++|=.| |+|.++..+++.+ ..+++|+.+ +-++..+......+.. .+.++.++.+|+.+.... .
T Consensus 6 ~~ilI~G-asg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T PRK05565 6 KVAIVTG-ASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKE----EGGDAIAVKADVSSEEDVENLVEQIVEK 80 (247)
T ss_pred CEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh----cCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4666666 5778888777543 225788888 9888776655555443 234588999998653210 0
Q ss_pred CCceeEEEECCCCC
Q psy2395 468 KKLFNIIVANPPYI 481 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~ 481 (570)
-+.+|+||.|+.+.
T Consensus 81 ~~~id~vi~~ag~~ 94 (247)
T PRK05565 81 FGKIDILVNNAGIS 94 (247)
T ss_pred hCCCCEEEECCCcC
Confidence 13699999997665
No 462
>PRK05650 short chain dehydrogenase; Provisional
Probab=52.65 E-value=71 Score=31.69 Aligned_cols=77 Identities=13% Similarity=0.086 Sum_probs=49.9
Q ss_pred EEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------cCCC
Q psy2395 400 KLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------NYKK 469 (570)
Q Consensus 400 ~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~~~~ 469 (570)
+||-.|+ +|.++..+++.+ ..+.+|+.++.++..++.+...+.. .+.++.++.+|+.+... ...+
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~----~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 76 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLRE----AGGDGFYQRCDVRDYSQLTALAQACEEKWG 76 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----cCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4666664 566777666543 2357899999998877666555543 34468888999865321 0114
Q ss_pred ceeEEEECCCCC
Q psy2395 470 LFNIIVANPPYI 481 (570)
Q Consensus 470 ~fD~Iv~NPPy~ 481 (570)
++|++|.|....
T Consensus 77 ~id~lI~~ag~~ 88 (270)
T PRK05650 77 GIDVIVNNAGVA 88 (270)
T ss_pred CCCEEEECCCCC
Confidence 699999986543
No 463
>PRK06139 short chain dehydrogenase; Provisional
Probab=52.58 E-value=55 Score=34.07 Aligned_cols=78 Identities=13% Similarity=0.133 Sum_probs=52.0
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------cC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------NY 467 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~~ 467 (570)
+.+||=.|+ +|.++..+++.+ ..+++|+.++-+++.++.....+.. .+.++.++..|+.+... ..
T Consensus 7 ~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~----~g~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 7 GAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRA----LGAEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh----cCCcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 456776666 455666665433 2357899999999888877666654 34567788888864211 11
Q ss_pred CCceeEEEECCCC
Q psy2395 468 KKLFNIIVANPPY 480 (570)
Q Consensus 468 ~~~fD~Iv~NPPy 480 (570)
.+++|++|.|..+
T Consensus 82 ~g~iD~lVnnAG~ 94 (330)
T PRK06139 82 GGRIDVWVNNVGV 94 (330)
T ss_pred cCCCCEEEECCCc
Confidence 1578999999654
No 464
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=52.54 E-value=1.6e+02 Score=31.35 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=16.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhc
Q psy2395 1 MKHLMLSKLEKFSKRLKELDFLLT 24 (570)
Q Consensus 1 ~~~~~~~~l~~~~~r~~~l~~~l~ 24 (570)
|...+.++++.+.++++.|-..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (367)
T PRK00578 1 MINEISERLKDLDEKLENIRGVLD 24 (367)
T ss_pred CchHHHHHHHHHHHHHHHHHhhCC
Confidence 344566777777777777666554
No 465
>PRK06125 short chain dehydrogenase; Provisional
Probab=52.41 E-value=69 Score=31.49 Aligned_cols=80 Identities=14% Similarity=0.052 Sum_probs=51.5
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc-----cCCCce
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ-----NYKKLF 471 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~-----~~~~~f 471 (570)
+.++|=.|++ |.++..+++.+ ..+++|++++.+++.++.+...+... .+.++.++..|+.+... ..-++.
T Consensus 7 ~k~vlItG~~-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~D~~~~~~~~~~~~~~g~i 82 (259)
T PRK06125 7 GKRVLITGAS-KGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAA---HGVDVAVHALDLSSPEAREQLAAEAGDI 82 (259)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhh---cCCceEEEEecCCCHHHHHHHHHHhCCC
Confidence 4678888864 44666665433 22579999999988777665555431 23467888888854211 112579
Q ss_pred eEEEECCCCC
Q psy2395 472 NIIVANPPYI 481 (570)
Q Consensus 472 D~Iv~NPPy~ 481 (570)
|++|.|+...
T Consensus 83 d~lv~~ag~~ 92 (259)
T PRK06125 83 DILVNNAGAI 92 (259)
T ss_pred CEEEECCCCC
Confidence 9999987543
No 466
>KOG1209|consensus
Probab=51.97 E-value=50 Score=32.36 Aligned_cols=73 Identities=21% Similarity=0.124 Sum_probs=46.6
Q ss_pred CCCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc----------cc
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN----------LQ 465 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~----------l~ 465 (570)
.+..||-.||.+|.++-++++.+ ..++.|+++--+-+-.......+ .+....-|+.+. ..
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~---------gl~~~kLDV~~~~~V~~v~~evr~ 76 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQF---------GLKPYKLDVSKPEEVVTVSGEVRA 76 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhh---------CCeeEEeccCChHHHHHHHHHHhh
Confidence 46689999999999999999866 34688998765443322221111 134444554321 12
Q ss_pred cCCCceeEEEECC
Q psy2395 466 NYKKLFNIIVANP 478 (570)
Q Consensus 466 ~~~~~fD~Iv~NP 478 (570)
.++++.|+.+.|.
T Consensus 77 ~~~Gkld~L~NNA 89 (289)
T KOG1209|consen 77 NPDGKLDLLYNNA 89 (289)
T ss_pred CCCCceEEEEcCC
Confidence 2458999999984
No 467
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=51.89 E-value=1.5e+02 Score=30.18 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=33.1
Q ss_pred CCCCEEEEECC--cccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMGT--GSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlGc--GtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.++.+||=.|+ |.|..++.+|+.. +.+|++++.+++-.+.++.
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~ 181 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKK 181 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH
Confidence 46778888874 4777788888775 5789999999888777743
No 468
>PF05869 Dam: DNA N-6-adenine-methyltransferase (Dam); InterPro: IPR008593 This family consists of several bacterial and phage DNA N-6-adenine-methyltransferase (Dam) like sequences [].; GO: 0003677 DNA binding, 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine
Probab=51.62 E-value=31 Score=32.75 Aligned_cols=10 Identities=40% Similarity=0.889 Sum_probs=8.8
Q ss_pred eEEEECCCCC
Q psy2395 472 NIIVANPPYI 481 (570)
Q Consensus 472 D~Iv~NPPy~ 481 (570)
..|++||||.
T Consensus 65 g~vf~NPPYs 74 (181)
T PF05869_consen 65 GRVFCNPPYS 74 (181)
T ss_pred ceEEecCchh
Confidence 4789999997
No 469
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=51.36 E-value=79 Score=30.66 Aligned_cols=79 Identities=10% Similarity=0.063 Sum_probs=51.5
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------cC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------NY 467 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~~ 467 (570)
+.++|-.|+ +|.++..+++.+ ..+.+|++++.++.....+...+.. .+.++.++.+|+.+... ..
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 77 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRA----KGGNAQAFACDITDRDSVDTAVAAAEQA 77 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHh----cCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456777775 566777766543 2357899999998777666555543 24468899999865211 00
Q ss_pred CCceeEEEECCCCC
Q psy2395 468 KKLFNIIVANPPYI 481 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~ 481 (570)
.++.|++|.|..+.
T Consensus 78 ~~~~d~vi~~ag~~ 91 (250)
T TIGR03206 78 LGPVDVLVNNAGWD 91 (250)
T ss_pred cCCCCEEEECCCCC
Confidence 13689999987654
No 470
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=51.28 E-value=21 Score=38.68 Aligned_cols=71 Identities=7% Similarity=0.002 Sum_probs=46.5
Q ss_pred CCEEEEECCcccHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc--cc-CCCceeE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSK-NKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL--QN-YKKLFNI 473 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l--~~-~~~~fD~ 473 (570)
..+|+=+|+ |.++..+++.+. .+..|+.+|.+++.++.++... ..+.++.||..+.. .. .-..+|.
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~--------~~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL--------PNTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC--------CCCeEEECCCCCHHHHHhcCCccCCE
Confidence 467777776 667666665442 2578999999999887765532 13568889986532 11 1157888
Q ss_pred EEECC
Q psy2395 474 IVANP 478 (570)
Q Consensus 474 Iv~NP 478 (570)
|++-.
T Consensus 301 vi~~~ 305 (453)
T PRK09496 301 FIALT 305 (453)
T ss_pred EEECC
Confidence 88743
No 471
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=51.19 E-value=96 Score=27.88 Aligned_cols=78 Identities=18% Similarity=0.154 Sum_probs=48.6
Q ss_pred EEEEECCcccHHHHHHHHhcC--CCcEEEEEeCC--HHHHHHHHHHHHhhcccCCCCEEEEEcccccc---------ccc
Q psy2395 400 KLLEMGTGSGAIAIAIAIYSK--NKIEIIATDIS--KFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN---------LQN 466 (570)
Q Consensus 400 ~VLDlGcGtG~i~l~la~~~~--~~~~V~gvDis--~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~---------l~~ 466 (570)
.+|=.|++ |.++..+++.+- ...+|+.+.-+ ....+.....+.. .+.++.++..|+.+. ...
T Consensus 2 ~~lItGa~-~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (167)
T PF00106_consen 2 TVLITGAS-SGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKA----PGAKITFIECDLSDPESIRALIEEVIK 76 (167)
T ss_dssp EEEEETTT-SHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHH----TTSEEEEEESETTSHHHHHHHHHHHHH
T ss_pred EEEEECCC-CHHHHHHHHHHHhcCceEEEEeeecccccccccccccccc----ccccccccccccccccccccccccccc
Confidence 45556665 556666654431 14688888888 4555544444443 356799999998643 111
Q ss_pred CCCceeEEEECCCCCC
Q psy2395 467 YKKLFNIIVANPPYIP 482 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~~ 482 (570)
..+++|++|.|.....
T Consensus 77 ~~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 77 RFGPLDILINNAGIFS 92 (167)
T ss_dssp HHSSESEEEEECSCTT
T ss_pred cccccccccccccccc
Confidence 1268999999977665
No 472
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=51.06 E-value=75 Score=33.33 Aligned_cols=38 Identities=21% Similarity=0.162 Sum_probs=26.0
Q ss_pred CCCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHH
Q psy2395 396 EKKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFAL 435 (570)
Q Consensus 396 ~~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al 435 (570)
.++.+||=.|+| .|.+++.+|+.. +++|++++.++...
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~ 220 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKE 220 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchh
Confidence 356788878875 455566667665 56899988876543
No 473
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=51.02 E-value=50 Score=34.41 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=59.0
Q ss_pred CCCCEEEEECC--cccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC-C-Cce
Q psy2395 396 EKKIKLLEMGT--GSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY-K-KLF 471 (570)
Q Consensus 396 ~~~~~VLDlGc--GtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~-~-~~f 471 (570)
+++.+||=.|+ |.|.+++.||+.. ++.++++-.+++-.+.+++.-. ..-+.+...|+.+..... . ..+
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~--G~~~v~~~~s~~k~~~~~~lGA------d~vi~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKAL--GATVVAVVSSSEKLELLKELGA------DHVINYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHc--CCcEEEEecCHHHHHHHHhcCC------CEEEcCCcccHHHHHHHHcCCCCc
Confidence 45778888883 4678888899887 3477777777766554443321 112444555555443322 1 369
Q ss_pred eEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 472 D~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
|+|+..- | ...+..+...|+++|.++..-
T Consensus 213 Dvv~D~v----------------------------G----~~~~~~~l~~l~~~G~lv~ig 241 (326)
T COG0604 213 DVVLDTV----------------------------G----GDTFAASLAALAPGGRLVSIG 241 (326)
T ss_pred eEEEECC----------------------------C----HHHHHHHHHHhccCCEEEEEe
Confidence 9998710 1 244455666889999887643
No 474
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=50.67 E-value=45 Score=26.91 Aligned_cols=44 Identities=9% Similarity=0.013 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCEEEEEEecccCCCCceEEEEEEeccchhhhh
Q psy2395 132 LRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKL 175 (570)
Q Consensus 132 ~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~ 175 (570)
+.--...+.++||.++.+...+.+..++.++++.+.++.+...+
T Consensus 17 L~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~~~~i~ql 60 (76)
T PRK11152 17 LERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVASERPIDLL 60 (76)
T ss_pred HHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECCCchHHHH
Confidence 44455677899999999999998888899999999776655443
No 475
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=50.65 E-value=1.2e+02 Score=30.80 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=31.7
Q ss_pred CCCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy2395 396 EKKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAK 439 (570)
Q Consensus 396 ~~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~ 439 (570)
.++.+||-.||| .|..+..+++.. +.+|++++.+++..+.++
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~ 203 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAM--GFETVAITRSPDKRELAR 203 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 456788888886 666666677665 578999999998877763
No 476
>PRK05876 short chain dehydrogenase; Provisional
Probab=50.60 E-value=74 Score=31.90 Aligned_cols=79 Identities=10% Similarity=0.135 Sum_probs=50.8
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------cC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------NY 467 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~~ 467 (570)
+.++|=.|++ |.++..+++.+ ..+++|+.+|.++..++.+...+.. .+.++.++..|+.+... ..
T Consensus 6 ~k~vlVTGas-~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~----~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 6 GRGAVITGGA-SGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRA----EGFDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----cCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4567777765 55666666543 2357899999998777655544432 24468888999865311 11
Q ss_pred CCceeEEEECCCCC
Q psy2395 468 KKLFNIIVANPPYI 481 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~ 481 (570)
.++.|++|.|..+.
T Consensus 81 ~g~id~li~nAg~~ 94 (275)
T PRK05876 81 LGHVDVVFSNAGIV 94 (275)
T ss_pred cCCCCEEEECCCcC
Confidence 14689999997653
No 477
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=50.50 E-value=1.4e+02 Score=29.93 Aligned_cols=78 Identities=17% Similarity=0.020 Sum_probs=45.5
Q ss_pred CCEEEEECCcc-cHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------c
Q psy2395 398 KIKLLEMGTGS-GAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------N 466 (570)
Q Consensus 398 ~~~VLDlGcGt-G~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~ 466 (570)
+..+|-.|+++ +.++..+|+.+ ..+++|+.++.+....+..+..... .+. ..++.+|+.+... .
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~----~g~-~~~~~~Dv~d~~~v~~~~~~~~~ 81 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAES----LGS-DFVLPCDVEDIASVDAVFEALEK 81 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHh----cCC-ceEEeCCCCCHHHHHHHHHHHHH
Confidence 56788888876 24666555443 2357899888775443333333222 121 2467888865311 1
Q ss_pred CCCceeEEEECCCC
Q psy2395 467 YKKLFNIIVANPPY 480 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy 480 (570)
.-+++|++|.|.-.
T Consensus 82 ~~g~iD~lVnnAG~ 95 (271)
T PRK06505 82 KWGKLDFVVHAIGF 95 (271)
T ss_pred HhCCCCEEEECCcc
Confidence 12579999999754
No 478
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=50.48 E-value=81 Score=30.98 Aligned_cols=79 Identities=15% Similarity=0.144 Sum_probs=47.8
Q ss_pred CCCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc---------
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN--------- 466 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~--------- 466 (570)
.+.+||=.|+++ .++..+++.+ ..+++|+.++.+. ..+.+.+.... .+.++.++.+|+.+....
T Consensus 14 ~~k~vlItGas~-gIG~~ia~~l~~~G~~v~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~D~~~~~~i~~~~~~~~~ 87 (258)
T PRK06935 14 DGKVAIVTGGNT-GLGQGYAVALAKAGADIIITTHGT-NWDETRRLIEK----EGRKVTFVQVDLTKPESAEKVVKEALE 87 (258)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCc-HHHHHHHHHHh----cCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 456788888755 4656655433 2357898888873 33333333332 234588899998653210
Q ss_pred CCCceeEEEECCCCC
Q psy2395 467 YKKLFNIIVANPPYI 481 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~ 481 (570)
..+.+|++|.|..+.
T Consensus 88 ~~g~id~li~~ag~~ 102 (258)
T PRK06935 88 EFGKIDILVNNAGTI 102 (258)
T ss_pred HcCCCCEEEECCCCC
Confidence 014689999987654
No 479
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=50.27 E-value=2.3e+02 Score=27.83 Aligned_cols=79 Identities=19% Similarity=0.131 Sum_probs=45.8
Q ss_pred CCCEEEEECCcccHHHHHHHHhc-CCCcEEEEEe-CCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc---------c
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATD-ISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL---------Q 465 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvD-is~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l---------~ 465 (570)
.+.++|=.|+++| ++..+++.+ ..+++|+.+. .+++.++.....+... .+.++.++..|+.+.. .
T Consensus 7 ~~k~vlItGas~g-IG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (260)
T PRK08416 7 KGKTLVISGGTRG-IGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQK---YGIKAKAYPLNILEPETYKELFKKID 82 (260)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHh---cCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 3557777776544 555555433 2357888774 3555554443333321 2446889999986531 1
Q ss_pred cCCCceeEEEECCC
Q psy2395 466 NYKKLFNIIVANPP 479 (570)
Q Consensus 466 ~~~~~fD~Iv~NPP 479 (570)
..-+++|++|.|..
T Consensus 83 ~~~g~id~lv~nAg 96 (260)
T PRK08416 83 EDFDRVDFFISNAI 96 (260)
T ss_pred HhcCCccEEEECcc
Confidence 11157899999864
No 480
>PRK06720 hypothetical protein; Provisional
Probab=50.20 E-value=1.1e+02 Score=28.36 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=47.8
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------cC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------NY 467 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~~ 467 (570)
+..+|-.|.+.| ++..++..+ ..+++|+.+|.++..++.+...+.. .+..+.++..|+.+... ..
T Consensus 16 gk~~lVTGa~~G-IG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~----~~~~~~~~~~Dl~~~~~v~~~v~~~~~~ 90 (169)
T PRK06720 16 GKVAIVTGGGIG-IGRNTALLLAKQGAKVIVTDIDQESGQATVEEITN----LGGEALFVSYDMEKQGDWQRVISITLNA 90 (169)
T ss_pred CCEEEEecCCCh-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh----cCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 557777776554 444444322 2357899999998877655444432 23346678888754211 01
Q ss_pred CCceeEEEECCCCC
Q psy2395 468 KKLFNIIVANPPYI 481 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~ 481 (570)
-+..|++|.|....
T Consensus 91 ~G~iDilVnnAG~~ 104 (169)
T PRK06720 91 FSRIDMLFQNAGLY 104 (169)
T ss_pred cCCCCEEEECCCcC
Confidence 15789999996543
No 481
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=50.10 E-value=3.5e+02 Score=29.16 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHhhccccCeEEEEE--EcCCCHHHHHHHHHHC
Q psy2395 508 LSSIKEIVKNASKYLVKNGLLLIE--HGYNQSNLVRKLLFKY 547 (570)
Q Consensus 508 l~~~~~~l~~~~~~LkpgG~l~~~--~~~~~~~~l~~ll~~~ 547 (570)
+..+...++.+...|++|-.+++. ++......+...+.+.
T Consensus 95 l~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 95 LTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 345667778888889887776664 3556677777666653
No 482
>PRK10869 recombination and repair protein; Provisional
Probab=50.01 E-value=1.8e+02 Score=32.78 Aligned_cols=66 Identities=3% Similarity=-0.065 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHhh----CChhHHHHHHHHHHHHHHHHHHHHHH
Q psy2395 30 NNIKDYCKKVREHSFLYPIVELYN-NYKKINEDIITAKEML----NDLEMRNFALDEINLAKKRIFDIELE 95 (570)
Q Consensus 30 ~d~~~~~~l~ke~~~L~~~v~~~~-~~~~~~~d~~~~~~l~----~D~~~~~~a~~e~~~~~~~~~~~~~~ 95 (570)
-||++..++..++..|..+-..|. .+.......+++.+-+ +.++-.+.++.+++.+.+++..+-++
T Consensus 293 ~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~ 363 (553)
T PRK10869 293 LDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQK 363 (553)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 399988888888887777777665 3333333333333222 23343444555555555555444433
No 483
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=49.68 E-value=2.4e+02 Score=28.93 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy2395 8 KLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKE 67 (570)
Q Consensus 8 ~l~~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~ 67 (570)
.++++..++..|+.....-.+ +|..=.++.++++.|+..++.+++.......+.++..
T Consensus 108 ~~~~ler~i~~Le~~~~T~~L--~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~a 165 (294)
T COG1340 108 SIKSLEREIERLEKKQQTSVL--TPEEERELVQKIKELRKELEDAKKALEENEKLKELKA 165 (294)
T ss_pred CHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777776665544 6677777777777777777777665555444444443
No 484
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=49.61 E-value=84 Score=30.79 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=50.6
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------cC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------NY 467 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~~ 467 (570)
+.+||-.|++ |.++..+++.+ ..+++|+.++-++..++.+...+.. .+.++.++..|+.+... ..
T Consensus 11 ~k~vlVtG~s-~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~----~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 85 (255)
T PRK06113 11 GKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQ----LGGQAFACRCDITSEQELSALADFALSK 85 (255)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh----cCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 5688888854 55666655432 2357899999888777655444432 23457788899865321 11
Q ss_pred CCceeEEEECCCCC
Q psy2395 468 KKLFNIIVANPPYI 481 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~ 481 (570)
-+++|+++.|..+.
T Consensus 86 ~~~~d~li~~ag~~ 99 (255)
T PRK06113 86 LGKVDILVNNAGGG 99 (255)
T ss_pred cCCCCEEEECCCCC
Confidence 14689999987653
No 485
>PRK09242 tropinone reductase; Provisional
Probab=49.41 E-value=99 Score=30.27 Aligned_cols=81 Identities=15% Similarity=0.056 Sum_probs=51.8
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------cC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------NY 467 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~~ 467 (570)
+.++|=.|++ |.++..+++.+ ..+++|+.++.+++.++....++... ..+.++.++.+|+.+... ..
T Consensus 9 ~k~~lItGa~-~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 9 GQTALITGAS-KGIGLAIAREFLGLGADVLIVARDADALAQARDELAEE--FPEREVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhh--CCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 5678888774 45666555443 23578999999988777666555431 013468888999865311 11
Q ss_pred CCceeEEEECCCCC
Q psy2395 468 KKLFNIIVANPPYI 481 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~ 481 (570)
-+++|+++.|..+.
T Consensus 86 ~g~id~li~~ag~~ 99 (257)
T PRK09242 86 WDGLHILVNNAGGN 99 (257)
T ss_pred cCCCCEEEECCCCC
Confidence 25799999987653
No 486
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=49.37 E-value=2.3e+02 Score=26.61 Aligned_cols=100 Identities=17% Similarity=0.192 Sum_probs=53.0
Q ss_pred EEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcc---cCC-----------CCEEEEEccccccccc
Q psy2395 401 LLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT---KYN-----------IPIKFIKSNWYNNLQN 466 (570)
Q Consensus 401 VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~---~~~-----------~~v~~~~~D~~~~l~~ 466 (570)
|.=+|+|+=.-+++...... +.+|+.+|.+++.++.+++.+..+.. ..+ .++. +..|+.+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~---- 75 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARA-GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEE---- 75 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGG----
T ss_pred EEEEcCCHHHHHHHHHHHhC-CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHH----
Confidence 55577765433333222222 58999999999999998887664210 000 1233 2333322
Q ss_pred CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 467 YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
. ...|+|+=.-| +.++.-+.++..+.+++.|+-.|.--+.
T Consensus 76 ~-~~adlViEai~--------------------------E~l~~K~~~~~~l~~~~~~~~ilasnTS 115 (180)
T PF02737_consen 76 A-VDADLVIEAIP--------------------------EDLELKQELFAELDEICPPDTILASNTS 115 (180)
T ss_dssp G-CTESEEEE-S---------------------------SSHHHHHHHHHHHHCCS-TTSEEEE--S
T ss_pred H-hhhheehhhcc--------------------------ccHHHHHHHHHHHHHHhCCCceEEecCC
Confidence 1 25788887543 2344556777777777777776654333
No 487
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=49.19 E-value=59 Score=33.42 Aligned_cols=44 Identities=30% Similarity=0.295 Sum_probs=30.9
Q ss_pred CCCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.++.+||-.|+| .|..++.+|+... ...|++++.++...+.+++
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~ 210 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE 210 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH
Confidence 356788887775 4667777787652 1378999888877776654
No 488
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=49.17 E-value=87 Score=31.15 Aligned_cols=78 Identities=12% Similarity=0.027 Sum_probs=49.2
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------cC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------NY 467 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~~ 467 (570)
+.++|=.|++ |.++..+++.+ ..+++|+.++.++...+.....+.. .+.++.++.+|+.+... ..
T Consensus 10 ~k~vlVtGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (278)
T PRK08277 10 GKVAVITGGG-GVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKA----AGGEALAVKADVLDKESLEQARQQILED 84 (278)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----cCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4567766654 45666655443 2357899999988776655444442 23458889999865311 00
Q ss_pred CCceeEEEECCCC
Q psy2395 468 KKLFNIIVANPPY 480 (570)
Q Consensus 468 ~~~fD~Iv~NPPy 480 (570)
-+++|++|.|..+
T Consensus 85 ~g~id~li~~ag~ 97 (278)
T PRK08277 85 FGPCDILINGAGG 97 (278)
T ss_pred cCCCCEEEECCCC
Confidence 1478999998654
No 489
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=49.16 E-value=1.6e+02 Score=29.99 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=29.9
Q ss_pred EEEEECCcccHH--HHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 400 KLLEMGTGSGAI--AIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 400 ~VLDlGcGtG~i--~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
+|-=||+|+=.. +..++.. +..|+.+|.+++.++.+...+..
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~---G~~V~l~d~~~~~~~~~~~~i~~ 50 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARA---GVDVLVFETTEELATAGRNRIEK 50 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhC---CCEEEEEECCHHHHHHHHHHHHH
Confidence 677888884333 3333432 57999999999999988776553
No 490
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=49.11 E-value=1.2e+02 Score=30.70 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=32.9
Q ss_pred CCCCEEEEEC--CcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMG--TGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlG--cGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.++.+||=.| .|.|..++.+|+.. +++|++++.+++-.+.++.
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~ 186 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE 186 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH
Confidence 4567888777 35777788888876 5789999999988777754
No 491
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=48.83 E-value=28 Score=35.09 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=35.6
Q ss_pred HHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHH
Q psy2395 385 LLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKI 437 (570)
Q Consensus 385 ~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~ 437 (570)
.++..+...++....+.+|+.||+|++++.+. + ..++.-|+++..+..
T Consensus 13 ~l~~~i~~~~p~~~~~yvEPF~Gggsv~l~~~---~--~~~~lND~n~~Li~~ 60 (266)
T TIGR00571 13 SLLPEIKKHLPKNFNCLVEPFVGGGAVFFNLN---P--KRYLLNDINEDLINL 60 (266)
T ss_pred HHHHHHHHhcCcccCEEEEecCCcchhheeec---C--cEEEEecCCHHHHHH
Confidence 45566666655444689999999999988664 3 358888999987654
No 492
>KOG0821|consensus
Probab=48.74 E-value=25 Score=34.34 Aligned_cols=60 Identities=10% Similarity=0.114 Sum_probs=44.9
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN 462 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~ 462 (570)
.+.-|.+||.|.|.++..+.... ..+...|++++..+.-.+..... ...+..+..+|++.
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~EA----a~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSEA----APGKLRIHHGDVLR 109 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhhc----CCcceEEeccccce
Confidence 45689999999999999998765 46888999999887766655543 23356677777653
No 493
>PRK08324 short chain dehydrogenase; Validated
Probab=48.47 E-value=1.3e+02 Score=34.85 Aligned_cols=78 Identities=15% Similarity=0.037 Sum_probs=49.6
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------cC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------NY 467 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~~ 467 (570)
+.+||=.|+ +|.++..+++.+ ..+++|+++|.++..++.+...+.. ..++.++.+|+.+... ..
T Consensus 422 gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~-----~~~v~~v~~Dvtd~~~v~~~~~~~~~~ 495 (681)
T PRK08324 422 GKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG-----PDRALGVACDVTDEAAVQAAFEEAALA 495 (681)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc-----cCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 456776665 455666666443 2357899999999877666544432 1357888888865311 00
Q ss_pred CCceeEEEECCCCC
Q psy2395 468 KKLFNIIVANPPYI 481 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~ 481 (570)
.+.+|+||.|....
T Consensus 496 ~g~iDvvI~~AG~~ 509 (681)
T PRK08324 496 FGGVDIVVSNAGIA 509 (681)
T ss_pred cCCCCEEEECCCCC
Confidence 14689999986543
No 494
>PRK07478 short chain dehydrogenase; Provisional
Probab=48.37 E-value=97 Score=30.27 Aligned_cols=78 Identities=9% Similarity=-0.015 Sum_probs=50.5
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------cC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------NY 467 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~~ 467 (570)
+.++|=.|++ |.++..+++.+ ..+++|+.++-++..++.+...+.. .+.++.++.+|+.+... ..
T Consensus 6 ~k~~lItGas-~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 6 GKVAIITGAS-SGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRA----EGGEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----cCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4567766654 55666666543 2357899999998877766555543 23468888899865311 11
Q ss_pred CCceeEEEECCCC
Q psy2395 468 KKLFNIIVANPPY 480 (570)
Q Consensus 468 ~~~fD~Iv~NPPy 480 (570)
.+++|++|.|...
T Consensus 81 ~~~id~li~~ag~ 93 (254)
T PRK07478 81 FGGLDIAFNNAGT 93 (254)
T ss_pred cCCCCEEEECCCC
Confidence 1478999998754
No 495
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=48.04 E-value=2e+02 Score=31.08 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy2395 5 MLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKK 57 (570)
Q Consensus 5 ~~~~l~~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~ 57 (570)
+..+++.+++=.++|.+....-.+=.-+.+...+.|++...+.-+...+.|..
T Consensus 222 lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~ 274 (426)
T smart00806 222 LLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYID 274 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777778888888888887777777888888888877777666666555543
No 496
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=47.94 E-value=58 Score=34.81 Aligned_cols=46 Identities=11% Similarity=0.103 Sum_probs=32.7
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~ 443 (570)
..++++||-|++|-.+ ++.++...| .+|++||+||..+.+.+-...
T Consensus 33 i~~~d~vl~ItSaG~N-~L~yL~~~P--~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 33 IGPDDRVLTITSAGCN-ALDYLLAGP--KRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCCCCeEEEEccCCch-HHHHHhcCC--ceEEEEeCCHHHHHHHHHHHH
Confidence 3567899999766444 444444443 799999999998888775544
No 497
>PRK05866 short chain dehydrogenase; Provisional
Probab=47.90 E-value=1.1e+02 Score=30.95 Aligned_cols=78 Identities=12% Similarity=0.037 Sum_probs=50.9
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------cC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------NY 467 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~~ 467 (570)
+.+||=.|++ |.++..+++.+ ..+++|+.++.+++.++.....+.. .+.++.++.+|+.+... ..
T Consensus 40 ~k~vlItGas-ggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~----~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 114 (293)
T PRK05866 40 GKRILLTGAS-SGIGEAAAEQFARRGATVVAVARREDLLDAVADRITR----AGGDAMAVPCDLSDLDAVDALVADVEKR 114 (293)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh----cCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4578877764 55666666543 2357999999998877666555543 23457888999865311 01
Q ss_pred CCceeEEEECCCC
Q psy2395 468 KKLFNIIVANPPY 480 (570)
Q Consensus 468 ~~~fD~Iv~NPPy 480 (570)
-+..|++|.|...
T Consensus 115 ~g~id~li~~AG~ 127 (293)
T PRK05866 115 IGGVDILINNAGR 127 (293)
T ss_pred cCCCCEEEECCCC
Confidence 1478999998643
No 498
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=47.39 E-value=44 Score=34.98 Aligned_cols=46 Identities=35% Similarity=0.278 Sum_probs=35.6
Q ss_pred CCCCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 395 FEKKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 395 ~~~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
.+++.+|.=+||| .|.-++.-|+... ..+|+|+|++++-+++|++-
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCHHHHHHHHhc
Confidence 3578899999998 4555555565543 57999999999999999864
No 499
>PRK06128 oxidoreductase; Provisional
Probab=47.04 E-value=1.4e+02 Score=30.21 Aligned_cols=78 Identities=13% Similarity=0.003 Sum_probs=45.6
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHH--HHHHHHHHHhhcccCCCCEEEEEcccccccc---------
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFA--LKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ--------- 465 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~a--l~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~--------- 465 (570)
+.++|=.|+ +|.++..+++.+ ..+++|+.+..++.. .+.....+.. .+.++.++.+|+.+...
T Consensus 55 ~k~vlITGa-s~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~v~~~~~~~~ 129 (300)
T PRK06128 55 GRKALITGA-DSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQA----EGRKAVALPGDLKDEAFCRQLVERAV 129 (300)
T ss_pred CCEEEEecC-CCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHH----cCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 457888884 566766666544 235688877765432 2222222322 24457888899865311
Q ss_pred cCCCceeEEEECCCC
Q psy2395 466 NYKKLFNIIVANPPY 480 (570)
Q Consensus 466 ~~~~~fD~Iv~NPPy 480 (570)
..-++.|++|.|..+
T Consensus 130 ~~~g~iD~lV~nAg~ 144 (300)
T PRK06128 130 KELGGLDILVNIAGK 144 (300)
T ss_pred HHhCCCCEEEECCcc
Confidence 001468999999754
No 500
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=46.98 E-value=1.4e+02 Score=33.58 Aligned_cols=94 Identities=21% Similarity=0.280 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Q psy2395 5 MLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEMLNDLEMRNFALDEINL 84 (570)
Q Consensus 5 ~~~~l~~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~~D~~~~~~a~~e~~~ 84 (570)
+.+.++.+.+++..+...+.+..+ -+-.+.. .++.+.+.+..+.....++.+...-+.+.+ ..|.+.+..
T Consensus 349 l~~~l~~l~~~~~~~~~~i~~~~~-----~yS~i~~---~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE--~~Ar~~l~~ 418 (560)
T PF06160_consen 349 LEKQLKELEKRYEDLEERIEEQQV-----PYSEIQE---ELEEIEEQLEEIEEEQEEINESLQSLRKDE--KEAREKLQK 418 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCc-----CHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 445566666666666666665433 1222222 233333334444444444443333332223 568888999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCc
Q psy2395 85 AKKRIFDIELEIKKLILPKDKNDK 108 (570)
Q Consensus 85 ~~~~~~~~~~~l~~~ll~~~~~d~ 108 (570)
+...+......+..+-||+=|.+-
T Consensus 419 ~~~~l~~ikR~lek~nLPGlp~~y 442 (560)
T PF06160_consen 419 LKQKLREIKRRLEKSNLPGLPEDY 442 (560)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHH
Confidence 999999999999999999877653
Done!