RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2395
(570 letters)
>2b3t_B RF-1, peptide chain release factor 1; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: e.38.1.1
Length = 360
Score = 499 bits (1288), Expect = e-175
Identities = 161/300 (53%), Positives = 221/300 (73%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
MK +++KLE +R +E+ LL + + + + RE++ L + + +++++ E
Sbjct: 1 MKPSIVAKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQE 60
Query: 61 DIITAKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTG 120
DI TA+ ML+D EMR A DE+ AK++ +E +++ L+LPKD +D+RN F+E+RAGTG
Sbjct: 61 DIETAQMMLDDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTG 120
Query: 121 GDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESG 180
GDE+ALF DL RMY R++E W+ EI+S S E GGYKEIIA+I G VY +LKFESG
Sbjct: 121 GDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESG 180
Query: 181 VHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKT 240
HRVQRVP TE+QGRIHTSACTVAV+PE + E ++NPADLRIDT+R+SGAGGQH+N T
Sbjct: 181 GHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTT 240
Query: 241 DSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
DSA+RITH+PTGIVV+CQ++RSQHKNKA AL +L ARI +++ ++Q A RR L+GS
Sbjct: 241 DSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGS 300
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein,
ribosomal protein, RNA-binding, binding, metal-binding,
zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y
3d5c_X 3mr8_V 3ms0_V
Length = 354
Score = 488 bits (1259), Expect = e-171
Identities = 128/296 (43%), Positives = 190/296 (64%), Gaps = 1/296 (0%)
Query: 5 MLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIIT 64
ML KL++ + +EL+ LL+ EV + Y R ++ + ++ L Y+K+ ED+
Sbjct: 1 MLDKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQ 60
Query: 65 AKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDES 124
A+ +L+D E++ A E R +E E+++ +LPKD D+R+ +EIRAGTGG+E+
Sbjct: 61 AESLLDDPELKEMAKAEREALLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEA 120
Query: 125 ALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRV 184
ALF DL MY+RF+E ++ E++ +++GG+ +++ + G Y K+ESGVHRV
Sbjct: 121 ALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFSKVVFEVRGPGAYGTFKYESGVHRV 180
Query: 185 QRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAV 244
QRVP TETQGRIHTS TVAV+P+A+E D +N ++RID RASG GGQ +N TDSAV
Sbjct: 181 QRVPVTETQGRIHTSTATVAVLPKAEEE-DFALNMDEIRIDVMRASGPGGQGVNTTDSAV 239
Query: 245 RITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
R+ H+PTGI+V CQ+ RSQ KN+ AL IL +R+ + K E+ K R IG+
Sbjct: 240 RVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEEAERLRKTRLAQIGT 295
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor
1 (RF-1), structural joint center for structural
genomics, JCSG; 2.34A {Streptococcus mutans}
Length = 371
Score = 485 bits (1252), Expect = e-170
Identities = 129/304 (42%), Positives = 194/304 (63%), Gaps = 5/304 (1%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
+ +L+ R +EL LL+ +V ++ K + + RE + V +Y YK++ +
Sbjct: 11 HHMNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQ 70
Query: 61 DIITAKEMLN----DLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIR 116
+I A+EM+ D E+ A +E+ +K + E +++ L+LPKD ND +NI +EIR
Sbjct: 71 NIADAQEMIKDASGDPELEEMAKEELKNSKVAKEEYEEKLRFLLLPKDPNDDKNIILEIR 130
Query: 117 AGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLK 176
GGDE+ALF DLL MY +++E WKFE++ S + +GG KE++A + G +VYSKLK
Sbjct: 131 GAAGGDEAALFAGDLLNMYQKYAENQGWKFEVMEASANGVGGLKEVVAMVSGQSVYSKLK 190
Query: 177 FESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQH 236
+ESG HRVQRVP TE+QGR+HTS TV V+PE +E+ + I+P DLR+D Y ASGAGGQ+
Sbjct: 191 YESGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEV-EYEIDPKDLRVDIYHASGAGGQN 249
Query: 237 INKTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRL 296
+NK +AVRI H+PT I V+ Q +R+Q KN+ A+KI+ AR+ D + Q R+
Sbjct: 250 VNKVATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKS 309
Query: 297 LIGS 300
+G+
Sbjct: 310 TVGT 313
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide
release factor 1, ribosome, structural genomics, BSGC
structure funded by NIH; 2.65A {Thermotoga maritima}
SCOP: e.38.1.1 PDB: 2fvo_A
Length = 342
Score = 443 bits (1143), Expect = e-154
Identities = 119/288 (41%), Positives = 177/288 (61%), Gaps = 13/288 (4%)
Query: 13 SKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEMLNDL 72
++ KE++ LL + ++ E++ + I + N K+ E I +E +
Sbjct: 2 KEKKKEIEKLLARPDLTPE--QMKNYGMEYAKIEEIENITNRIKETQEFIELLREEGEN- 58
Query: 73 EMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLL 132
E+ EI +K + + ++L+ +EIR GTGG+E+ALF DL
Sbjct: 59 EL------EIEKYEKEL---DQLYQELLFLLSPEASDKAIVEIRPGTGGEEAALFARDLF 109
Query: 133 RMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRVQRVPKTET 192
RMY R++ER W E+ +++GG +E++ + G N Y LK+ESGVHRVQRVP TE+
Sbjct: 110 RMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPVTES 169
Query: 193 QGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTG 252
GRIHTS TVAV+PE +E DI I P DL+I+T+RASG GGQ++NKT+SAVRITH+PTG
Sbjct: 170 GGRIHTSTATVAVLPEIEEK-DIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTG 228
Query: 253 IVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
IVV CQN+RSQ++NK AL+IL AR+ + +++ ++ R+ IG+
Sbjct: 229 IVVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGT 276
>2b3t_A Protein methyltransferase HEMK; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Length = 276
Score = 327 bits (840), Expect = e-109
Identities = 98/267 (36%), Positives = 159/267 (59%), Gaps = 8/267 (2%)
Query: 303 KKSPLNIFETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGK 362
+ S + ILL++VT ++ E +L ++ L+ L+ RR GEPIA++ G
Sbjct: 15 QASESPRRDAEILLEHVTGRGRTFILAFGETQLTDEQCQQLDALLTRRRDGEPIAHLTGV 74
Query: 363 KEFYGLVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNK 422
+EF+ L L ++ LIPRP+TE LV+ + + E+ ++L++GTG+GAIA+A+A +
Sbjct: 75 REFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPD- 133
Query: 423 IEIIATDISKFALKIAKKNAKKKLTKYNIP-IKFIKSNWYNNLQNYKKLFNIIVANPPYI 481
EIIA D A+ +A++NA+ I I ++S+W++ L + F +IV+NPPYI
Sbjct: 134 CEIIAVDRMPDAVSLAQRNAQH----LAIKNIHILQSDWFSALAGQQ--FAMIVSNPPYI 187
Query: 482 PKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVR 541
+ D HL +GD+RFEP+ AL +G++ I I++ + LV G LL+EHG+ Q VR
Sbjct: 188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVR 247
Query: 542 KLLFKYGFSDIKSWRDLSGIERVTQGK 568
+ G+ D+++ RD ERVT G+
Sbjct: 248 QAFILAGYHDVETCRDYGDNERVTLGR 274
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation;
2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X
2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Length = 365
Score = 280 bits (719), Expect = 6e-90
Identities = 99/286 (34%), Positives = 152/286 (53%), Gaps = 5/286 (1%)
Query: 9 LEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEM 68
+ + RLKEL+ L + N+ + K +E + L V+ + + + + ++ E
Sbjct: 19 IPQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDTFRSLESDLQGLLELMEE 78
Query: 69 LNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFV 128
L E R E+ A K++ ++ + L + ++N + I+ G GG E+ +
Sbjct: 79 LPA-EEREALKPELEEAAKKLDELYHQT----LLNFPHAEKNAILTIQPGAGGTEACDWA 133
Query: 129 NDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRVQRVP 188
LLRMY RF+ER ++ E++ + G + G N Y L E+GVHR+ R
Sbjct: 134 EMLLRMYTRFAERQGFQVEVVDLTPGPEAGIDYAQILVKGENAYGLLSPEAGVHRLVRPS 193
Query: 189 KTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITH 248
+ GR HTS V VIPE DE ++ + P +LRID RASG GGQ +N TDSAVR+ H
Sbjct: 194 PFDASGRRHTSFAGVEVIPEVDEEVEVVLKPEELRIDVMRASGPGGQGVNTTDSAVRVVH 253
Query: 249 IPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMR 294
+PTGI V CQ RSQ KNK ALKIL AR+ + + ++++ +R
Sbjct: 254 LPTGITVTCQTTRSQIKNKELALKILKARLYELERKKREEELKALR 299
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular
mimicry, translation; 1.81A {Escherichia coli} SCOP:
e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Length = 365
Score = 278 bits (712), Expect = 6e-89
Identities = 113/289 (39%), Positives = 175/289 (60%), Gaps = 7/289 (2%)
Query: 9 LEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEM 68
+ +RL+E++ L Q +V N + +E S L +V+ + K+ ED+ E+
Sbjct: 27 YDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLEL 86
Query: 69 L---NDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESA 125
+D E N A+ E++ ++++ +E + + D + +++I+AG+GG E+
Sbjct: 87 AVEADDEETFNEAVAELDALEEKLAQLEFRR----MFSGEYDSADCYLDIQAGSGGTEAQ 142
Query: 126 LFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRVQ 185
+ + L RMY+R++E +K EII S E+ G K + +I G Y L+ E+GVHR+
Sbjct: 143 DWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLV 202
Query: 186 RVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVR 245
R ++ GR HTS + V PE D+ DI INPADLRID YRASGAGGQH+N+T+SAVR
Sbjct: 203 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVR 262
Query: 246 ITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMR 294
ITHIPTGIV QCQNDRSQHKNK A+K + A++ + +++++ + M
Sbjct: 263 ITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAME 311
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 273 bits (700), Expect = 3e-88
Identities = 72/258 (27%), Positives = 130/258 (50%), Gaps = 20/258 (7%)
Query: 314 ILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNIT 373
+++ V + +L + + + E + +L+++R G P+ YI+G+KEF GL +
Sbjct: 40 LIVSRVLGIRKEDLFLK-DLGVSPTEEKRILELVEKRASGYPLHYILGEKEFMGLSFLVE 98
Query: 374 SDVLIPRPETELLVDLIVKKTFEKK-IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISK 432
V +PRPETE LV+L ++ + + ++GTGSGAI +++A +S + ATD+S
Sbjct: 99 EGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFS--DAIVFATDVSS 156
Query: 433 FALKIAKKNAKKKLTKYNIP--IKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNK 490
A++IA+KNA+ ++ + K + + +I++NPPY+ HL K
Sbjct: 157 KAVEIARKNAE----RHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSA-HLPK 211
Query: 491 GDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFS 550
D+ FEP AL +GL +E +Y ++L+E G +Q ++K++ F
Sbjct: 212 -DVLFEPPEALFGGEDGLDFYREFFG---RYDTSGKIVLMEIGEDQVEELKKIVSDTVF- 266
Query: 551 DIKSWRDLSGIERVTQGK 568
+D +G R
Sbjct: 267 ----LKDSAGKYRFLLLN 280
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial;
GGQ domain, translation; NMR {Mus musculus}
Length = 115
Score = 218 bits (557), Expect = 2e-69
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 178 ESGV--HRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQ 235
SG R+Q P G +A TV V D + +N ++L + G GGQ
Sbjct: 5 SSGKWGLRLQEKPALLFPG---MAASTVQVAGRKDYPALLPLNESELEEQFVKGHGPGGQ 61
Query: 236 HINKTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQS 288
NKT + V + H+P+GIVV+C RS +N+ A K+L ++ S
Sbjct: 62 ATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKIARKVLQEKVDVFYNSGPSS 114
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific;
structural genomics, PSI-biology; 2.55A
{Alicyclobacillus acidocaldarius subsp}
Length = 215
Score = 221 bits (565), Expect = 3e-69
Identities = 59/208 (28%), Positives = 109/208 (52%), Gaps = 14/208 (6%)
Query: 370 LNITSDVLIPRPETELLVDLIVK--KTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIA 427
+ D LIPRP+TE+LV+ ++ K +++++GTGSG IA++IA+ + + A
Sbjct: 1 FEVGPDCLIPRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPG-VSVTA 59
Query: 428 TDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKL---FNIIVANPPYIPKG 484
D+S AL +A++NA+ ++ + + ++ L + ++ IV+NPPYIP G
Sbjct: 60 VDLSMDALAVARRNAE----RFGAVVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTG 115
Query: 485 DIHLNKGDLR-FEPINALTDYSNGLSSIKEIVKNASKYLVK-NGLLLIEHGYNQSNLVRK 542
+I + +R +EP AL +GL + + L + + +E G+NQ++ V +
Sbjct: 116 EIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVAR 175
Query: 543 LLFKYGFS--DIKSWRDLSGIERVTQGK 568
L + ++ +DL GI+RV
Sbjct: 176 LFAPWRERGFRVRKVKDLRGIDRVIAVT 203
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 216 bits (552), Expect = 6e-67
Identities = 36/222 (16%), Positives = 79/222 (35%), Gaps = 18/222 (8%)
Query: 340 INILNKL-IQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTFEKK 398
+++ KL R I K +GL + L+ P + + +
Sbjct: 1 MSLNGKLDFSNRQARILYNKAIAK-ALFGLDIEYHPKGLVTTPISRYIFLKTFLR---GG 56
Query: 399 IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKS 458
LE+GTG A+ +A N ++ AT++ + + A++N ++ N+ +
Sbjct: 57 EVALEIGTGHTAMMALMAEKFFN-CKVTATEVDEEFFEYARRNIER--NNSNVRLVKSNG 113
Query: 459 NWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNA 518
+ F++I + PPY K A+ G ++++ A
Sbjct: 114 GIIKGVVEGT--FDVIFSAPPYYDKPLGR------VLTEREAIGGGKYGEEFSVKLLEEA 165
Query: 519 SKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKSWRDLSG 560
+L G + + + + ++ + G S +D+
Sbjct: 166 FDHLNPGGKVALYLPDKEK--LLNVIKERGIKLGYSVKDIKF 205
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 111 bits (279), Expect = 8e-29
Identities = 32/189 (16%), Positives = 68/189 (35%), Gaps = 35/189 (18%)
Query: 375 DVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFA 434
D P +T L+D + ++ E KI +L++GT +G I + + +++TD++ A
Sbjct: 2 DWYEPGEDTYTLMDALEREGLEMKI-VLDLGTSTGVITEQLR----KRNTVVSTDLNIRA 56
Query: 435 LKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLR 494
L+ + ++++ ++ +++V NPPY+P
Sbjct: 57 LESHRGG------------NLVRADLLCSINQES--VDVVVFNPPYVPD----------- 91
Query: 495 FEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKS 554
+ G E++ + L L+ N+ V L + G+
Sbjct: 92 -TDDPIIGGGYLGR----EVIDRFVDAVTVGMLYLLVIEANRPKEVLARLEERGYGTRIL 146
Query: 555 WRDLSGIER 563
E
Sbjct: 147 KVRKILGET 155
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 96.8 bits (241), Expect = 1e-22
Identities = 33/202 (16%), Positives = 80/202 (39%), Gaps = 16/202 (7%)
Query: 353 GEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIA 412
E + Y++ + L + + V + LL +K K++++ +G+G I
Sbjct: 11 DERLDYLLAEN----LRIIQSPSVFSFSIDAVLLAKFSYLPI--RKGKIIDLCSGNGIIP 64
Query: 413 IAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKK-LF 471
+ ++ ++ K +I+ +I + +AK++ + I+ I+ + K
Sbjct: 65 LLLS--TRTKAKIVGVEIQERLADMAKRSV--AYNQLEDQIEIIEYDLKKITDLIPKERA 120
Query: 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531
+I+ NPPY D L + F + ++++ ++ A+ L + G
Sbjct: 121 DIVTCNPPYFATPDTSLKNTNEHFRIAR-----HEVMCTLEDTIRVAASLLKQGGKANFV 175
Query: 532 HGYNQSNLVRKLLFKYGFSDIK 553
H + + ++ KY +
Sbjct: 176 HRPERLLDIIDIMRKYRLEPKR 197
>2h00_A Methyltransferase 10 domain containing protein; structural
genomics, structural genomics consortium, SGC; HET: SAH;
2.00A {Homo sapiens} SCOP: c.66.1.54
Length = 254
Score = 89.8 bits (222), Expect = 2e-20
Identities = 34/214 (15%), Positives = 71/214 (33%), Gaps = 26/214 (12%)
Query: 363 KEFYGLVLNITSDVLIPRPETELLVDLIV-------KKTFEKKIKLLEMGTGSGAIAIAI 415
+E +GL ++I + LIP L V + +++GTG+ I +
Sbjct: 24 REDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLL 83
Query: 416 AIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL-----QNYKKL 470
+AT++ AKKN ++ + IK +K L + + +
Sbjct: 84 GATLNG-WYFLATEVDDMCFNYAKKNVEQN--NLSDLIKVVKVPQKTLLMDALKEESEII 140
Query: 471 FNIIVANPPYIPKGD----------IHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASK 520
++ + NPP+ + I + L +K I+ ++ +
Sbjct: 141 YDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQ 200
Query: 521 YLVKNGLLLIEHGYNQS-NLVRKLLFKYGFSDIK 553
+ G S +++ L G +
Sbjct: 201 LKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVT 234
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F
alternative rescue factor, ARFB, release factor, rescue
of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Length = 140
Score = 86.4 bits (214), Expect = 3e-20
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 30/113 (26%)
Query: 214 DININPADLRIDTYRASGAGGQHINKTDSAVRIT------------------------HI 249
+ I +L I RA GAGGQH+NKT +A+ +
Sbjct: 7 HVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISS 66
Query: 250 PTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQ------SNTAKMRRL 296
IV++ Q RSQ N+ AL L+A IK+ ++ + +K RRL
Sbjct: 67 DGVIVIKAQEYRSQELNREAALARLVAMIKELTTEKKARRPTRPTRASKERRL 119
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural
genomics, PSI-2, protein STRU initiative; NMR
{Pseudomonas syringae PV}
Length = 108
Score = 79.6 bits (196), Expect = 3e-18
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 24/99 (24%)
Query: 213 EDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTG-------------------- 252
++++ A++ + RA GAGGQ++NK SA+ +
Sbjct: 6 NNVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRIT 65
Query: 253 ----IVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQ 287
IV++ Q R+Q +N+A AL L I ++ E
Sbjct: 66 SDGVIVLKAQQYRTQEQNRADALLRLSELIVNAAKLEHH 104
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 77.3 bits (191), Expect = 1e-16
Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 38/178 (21%)
Query: 364 EFYGLVLNITSD--VLIPR---PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIY 418
G L +D V T++LV+ +V + +L++G G G I IA+A
Sbjct: 17 ILRGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDKDDD---ILDLGCGYGVIGIALADE 73
Query: 419 SKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANP 478
K DI++ A+K+AK+N K N I+ + S+ Y N+++ K +N I+ NP
Sbjct: 74 VK---STTMADINRRAIKLAKENIKLNNLD-NYDIRVVHSDLYENVKDRK--YNKIITNP 127
Query: 479 PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ 536
P G + I++ + L NG + + Q
Sbjct: 128 PIR------------------------AGKEVLHRIIEEGKELLKDNGEIWVVIQTKQ 161
>1j26_A Immature colon carcinoma transcript 1; peptide chain release
factors, RF-1, the GGQ motif, immature carcinoma
transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Length = 112
Score = 69.8 bits (170), Expect = 8e-15
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 25/100 (25%)
Query: 207 PEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTG-------------- 252
E + I L I R+SG GGQ++NK +S +
Sbjct: 7 GEHAKQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIAL 66
Query: 253 -----------IVVQCQNDRSQHKNKAFALKILLARIKDS 281
+V+ ++ R Q +N A L+ + I ++
Sbjct: 67 THKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAEA 106
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.4 bits (174), Expect = 4e-13
Identities = 97/558 (17%), Positives = 185/558 (33%), Gaps = 137/558 (24%)
Query: 42 HSFLYPIVELYNNYKKINEDIITAKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLI- 100
H + E YK I +++ + ++ D K I E EI +I
Sbjct: 5 HHMDFETGEHQYQYKDILSVFE--DAFVDNFDCKD-VQDMP----KSILSKE-EIDHIIM 56
Query: 101 LPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNY------WKFEIISRSLS 154
+ +F + + + FV ++LR NY K E S+
Sbjct: 57 SKDAVSGTLRLFWTLLS-KQEEMVQKFVEEVLR-------INYKFLMSPIKTEQRQPSMM 108
Query: 155 EIGGYKEIIARIIGLN-VYSKLKFESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIE 213
Y E R+ N V++K + V R+ ++ +
Sbjct: 109 TRM-YIEQRDRLYNDNQVFAK-------YNVSRLQPYL---KLRQALL------------ 145
Query: 214 DININPADLRIDTYRASGAGGQHINKT---DSAVR----ITHIPTGI----VVQCQNDRS 262
+ PA + G+G KT + I + C + +
Sbjct: 146 --ELRPAK-NVLIDGVLGSG-----KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 263 QHKNKAFALKILLARIKDSKLREQQSNT-----------AKMRRLLIGSVQKKSPLNIFE 311
+ L+ LL +I D + ++ A++RRLL +
Sbjct: 198 VLEM----LQKLLYQI-DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC------ 246
Query: 312 TNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRIL----GEPIAYIIGKKEFYG 367
LL V L +V+ + + N N + +IL + + +
Sbjct: 247 ---LL--V--LLNVQ---------NAKAWNAFN--LSCKILLTTRFKQVTDFLSAATTTH 288
Query: 368 LVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLL--EMGTGSGAIAIAIAIYSKNKIEI 425
+ L+ S L P LL+ K + + + L E+ T + ++I +++ +
Sbjct: 289 ISLDHHSMTLTPDEVKSLLL-----KYLDCRPQDLPREVLTTN---PRRLSIIAESIRDG 340
Query: 426 IATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ--NYKKLFNIIVANPP--YI 481
+AT + K KLT I+S+ N L+ Y+K+F+ + PP +I
Sbjct: 341 LAT-WDNW-----KHVNCDKLTT------IIESS-LNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 482 PKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVR 541
P + L D+ + + + + S +++ K ++ + L L N+ L R
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 542 KLLFKYGFSDIKSWRDLS 559
++ Y DL
Sbjct: 448 SIVDHYNIPKTFDSDDLI 465
Score = 38.7 bits (89), Expect = 0.006
Identities = 44/215 (20%), Positives = 77/215 (35%), Gaps = 63/215 (29%)
Query: 4 LMLSKLEKFS---KRLKE-------LDFLLTQK-----EVHNNIKDYCKKVREHSFLYPI 48
++++KL K+S K+ KE + L K +H + I
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS----------------I 449
Query: 49 VELYNNYKKI-NEDIITAKEMLNDLEMRNFA---LDEINLAKKRIFDIELEIKKLILPKD 104
V+ YN K ++D+I D + L I ++ + + L
Sbjct: 450 VDHYNIPKTFDSDDLIPPYL---DQYFYSHIGHHLKNIEHPER--MT---LFRMVFL--- 498
Query: 105 KNDKRNIFIE--IRA-GTGGDESALFVNDL--LRMYIRFSERNYWKFEIISRSLSE-IGG 158
D R F+E IR T + S +N L L+ Y + N K+E + ++ + +
Sbjct: 499 --DFR--FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Query: 159 YKEIIARI-------IGLNVYSKLKFESGVHRVQR 186
+E + I L + FE +VQR
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 38.3 bits (88), Expect = 0.007
Identities = 31/226 (13%), Positives = 74/226 (32%), Gaps = 70/226 (30%)
Query: 51 LYNNYKKINEDIITAKEMLNDLEMR----NFAL--DEINLAKKRI---------FDIELE 95
+ N K+ I ++ +L E R ++ ++ + D+ +
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 96 IKKLI----LPKDKNDKR----NIFIEIRAGTGGDESAL---FVN--DLLRMY-----IR 137
+ KL + K + +I++E++ +E AL V+ ++ + + I
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKV-KLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 138 FSERNYWKFEIISRSLSEIGGYKEI-IARIIGLNVYSKLKFESGVHRVQRVPKTETQGRI 196
Y+ + I L I + + + R++ L+ +F + +I
Sbjct: 467 PYLDQYF-YSHIGHHLKNIEHPERMTLFRMVFLD----FRF--------------LEQKI 507
Query: 197 -HTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTD 241
H S A + ++ + Y+ +I D
Sbjct: 508 RHDSTAWNASGSILNTLQQLKF---------YK------PYICDND 538
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 68.0 bits (166), Expect = 2e-12
Identities = 25/170 (14%), Positives = 65/170 (38%), Gaps = 27/170 (15%)
Query: 364 EFYGLVLNITSDV-LIPRPETELLVDLIVKKTFEKKI--KLLEMGTGSGAIAIAIAIYSK 420
+ G I + + R ++ ++ + + +++++G G+G I + + +
Sbjct: 187 KLEGTDWTIHNHANVFSRTGLDIGARFFMQ-HLPENLEGEIVDLGCGNGVIGLTLLDKNP 245
Query: 421 NKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPY 480
+ +++ D S A+ ++ N + + + +F+ +N + ++ ++ FN ++ NPP
Sbjct: 246 -QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFR--FNAVLCNPP- 301
Query: 481 IPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530
H + A + L NG L I
Sbjct: 302 -----FHQQHA----------LTDNVAWEMFHH----ARRCLKINGELYI 332
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 67.0 bits (164), Expect = 3e-12
Identities = 38/192 (19%), Positives = 77/192 (40%), Gaps = 37/192 (19%)
Query: 345 KLIQRRILGEPIA---YIIGKKEFYGLVLNITSDVLIPR---PETELLVDLIVKKTFEKK 398
L R+ +P+ G+ GL + V ++LL+ + T K
Sbjct: 141 GLYFGRLEKQPVFDAEKFWGEYSVDGLTVKTLPGVFSRDGLDVGSQLLLSTLTPHTKGK- 199
Query: 399 IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKS 458
+L++G G+G +++A A +S KI + D+S A++ ++ + + S
Sbjct: 200 --VLDVGCGAGVLSVAFARHSP-KIRLTLCDVSAPAVEASRATLA----ANGVEGEVFAS 252
Query: 459 NWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNA 518
N ++ + K F++I++NPP H L + + +++ A
Sbjct: 253 NVFSEV---KGRFDMIISNPP------FHDGMQT--------------SLDAAQTLIRGA 289
Query: 519 SKYLVKNGLLLI 530
++L G L I
Sbjct: 290 VRHLNSGGELRI 301
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 65.3 bits (159), Expect = 6e-12
Identities = 24/164 (14%), Positives = 58/164 (35%), Gaps = 19/164 (11%)
Query: 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK--------KKLT 447
++ ++ ++G G+GA +A+A K E+ + S+ + A+++ + ++
Sbjct: 35 DRACRIADLGAGAGAAGMAVA-ARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIE 93
Query: 448 KYNIPIK-FIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSN 506
+ K+ L + F+ ++ NPPY GD ++
Sbjct: 94 VLEADVTLRAKARVEAGLPDEH--FHHVIMNPPYNDAGDRRTPDALKAEA-------HAM 144
Query: 507 GLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFS 550
++ ++ AS +V G L + +
Sbjct: 145 TEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSRFGG 188
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 64.6 bits (157), Expect = 3e-11
Identities = 28/186 (15%), Positives = 64/186 (34%), Gaps = 34/186 (18%)
Query: 345 KLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEM 404
+ RILG + F ++ S +L+ + + + ++L++
Sbjct: 187 RAFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEA------LQERLGPEGVRGRQVLDL 240
Query: 405 GTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL 464
G G GA+ + +A + E++ + ++ +K + + + + S+ L
Sbjct: 241 GAGYGALTLPLA---RMGAEVVGVEDDLASVLSLQKGLE----ANALKAQALHSDVDEAL 293
Query: 465 QNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVK 524
+ F+IIV NPP H+ + + A+ L
Sbjct: 294 TEEAR-FDIIVTNPP------FHVGGA----------VILDVAQAFVNV----AAARLRP 332
Query: 525 NGLLLI 530
G+ +
Sbjct: 333 GGVFFL 338
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 3e-08
Identities = 54/279 (19%), Positives = 94/279 (33%), Gaps = 102/279 (36%)
Query: 39 VREHSFLYPIVELYNNYKKINEDIITAKE-----MLNDLEMRNFALDEINLAKKRIFDIE 93
VR + YP L I ED + E ML+ + N +++ +
Sbjct: 308 VRCYE-AYPNTSLPP---SILEDSLENNEGVPSPMLS---ISNLTQEQV----------Q 350
Query: 94 LEIKKL--ILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIIS- 150
+ K LP K +EI +L VN +N ++S
Sbjct: 351 DYVNKTNSHLPAGKQ------VEI---------SL-VN---------GAKNL----VVSG 381
Query: 151 --RSLSEIGGYKEIIARIIGLNVY-SKLKFESGV--HRV---QRVPKTETQ-GRI----H 197
+SL GLN+ K K SG+ R+ +R K + + H
Sbjct: 382 PPQSL-------------YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 198 TS--ACTVAVIPEADEIEDININPADLRI---DTYRASGAGGQHINK--TDSAVR-ITHI 249
+ +I + +++ N D++I DT+ G+ + ++ ++ V I +
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF--DGSDLRVLSGSISERIVDCIIRL 486
Query: 250 PTGIVV---QCQNDRSQH-----KNKAFALKILLARIKD 280
P V ++ H A L +L R KD
Sbjct: 487 P----VKWETTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Score = 55.8 bits (134), Expect = 3e-08
Identities = 80/458 (17%), Positives = 155/458 (33%), Gaps = 143/458 (31%)
Query: 31 NIKDYCKKVREHSFLYPIVELYNNYKKINEDII-TAKEMLNDLEMRNFALDEINLAKKRI 89
N DY E + +LY Y + D+I + E L++L L +++
Sbjct: 165 NTDDY---FEE------LRDLYQTYHVLVGDLIKFSAETLSELI-------RTTLDAEKV 208
Query: 90 FDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDE---SALF---VNDLLRM--YIRFSER 141
F L I + ++E + T + S + ++++ Y+ ++
Sbjct: 209 FTQGLNILE-------------WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL 255
Query: 142 -NYWKFEIISRSLSEIGGYKEII-ARIIGL---------NVYSKLK--FESGVHRVQRVP 188
+ E+ S G + ++ A I +V + F GV + P
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP 315
Query: 189 KTETQGRIHTSACTVAVIPEADE--------IEDININPADLRIDTYRASGAGGQHI--- 237
T I + E +E I ++ ++ + G+ +
Sbjct: 316 NTSLPPSILEDSL------ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 238 --NKTDSAVRITHIP---TGIVVQCQNDRSQHKNKAFALKILLARIKDS--KLREQQSNT 290
N + V ++ P G+ + K KA + + +RI S KL+
Sbjct: 370 LVNGAKNLV-VSGPPQSLYGLNLTL------RKAKAPS-GLDQSRIPFSERKLKFS---- 417
Query: 291 AKMRRLLIGSVQKKSPLNIFETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRR 350
R L + SP F ++ LL + L + +L+ NN + ++I I
Sbjct: 418 --NRFLPVA-----SP---FHSH-LLVPASDLINKDLVKNNV-SFNAKDIQI-------- 457
Query: 351 ILGEPIAYIIGKKEFY----GLVLNITSDVLIPRPETELLVDLIVKKT--FEKKIK---- 400
P+ Y G L + S + R +VD I++ +E +
Sbjct: 458 ----PV---------YDTFDGSDLRVLSGSISER-----IVDCIIRLPVKWETTTQFKAT 499
Query: 401 -LLEMGTGSGAIAIAIAIYSKNK----IEII-ATDISK 432
+L+ G G GA + + +NK + +I A +
Sbjct: 500 HILDFGPG-GASGLG-VLTHRNKDGTGVRVIVAGTLDI 535
Score = 39.6 bits (92), Expect = 0.003
Identities = 52/349 (14%), Positives = 99/349 (28%), Gaps = 122/349 (34%)
Query: 243 AVR---ITH--------IPTGIVVQCQNDRSQHKNKAFALKI------------------ 273
+ R ++H +PT SQ + + F +
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIA----SQLQ-EQFNKILPEPTEGFAADDEPTTPAE 59
Query: 274 LLAR----IKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNILLKYVTRLSDV---- 325
L+ + + + S + ++L L FE L +D+
Sbjct: 60 LVGKFLGYVSS---LVEPSKVGQFDQVL------NLCLTEFENCYL-----EGNDIHALA 105
Query: 326 -ELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETE 384
+L+ N+ L K +LI+ Y IT+ ++ RP +
Sbjct: 106 AKLLQENDTTLVKT-----KELIK--------NY-------------ITARIMAKRPFDK 139
Query: 385 LLVDLIVKKTFEKKIKL-LEMGTGSGAIAIAI-------AIYSKNKIEIIATDISKFALK 436
+ + E +L G G G Y ++I +
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFG-GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 437 IAKKNAKKKLTKYNIPIKFIKSNWYNNL-----QNYKKLFNIIVANPP--------YIPK 483
I +K+ + I W N ++Y L +I ++ P Y+
Sbjct: 199 IRTTLDAEKVFTQGLNIL----EWLENPSNTPDKDY--LLSIPISCPLIGVIQLAHYVVT 252
Query: 484 GDIH-LNKGDLRFEPINALTDYSNGL---------SSIKEIVKNASKYL 522
+ G+LR + T +S GL S + + K +
Sbjct: 253 AKLLGFTPGELR-SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300
Score = 39.3 bits (91), Expect = 0.004
Identities = 58/334 (17%), Positives = 100/334 (29%), Gaps = 144/334 (43%)
Query: 130 DLLRMYIRFSE-RNYWK------FEIISRSLSEI------------GGYKEIIARIIGLN 170
DL Y ++ W + S+ +I GG K + I N
Sbjct: 1634 DL---YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK---GKRIREN 1687
Query: 171 VYSKLKFES---GVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDINI--N--PA--- 220
YS + FE+ G + +++ K + H+++ T +++ ++ PA
Sbjct: 1688 -YSAMIFETIVDGKLKTEKIFKEINE---HSTSYTF----RSEK-GLLSATQFTQPALTL 1738
Query: 221 -------DLR----IDT-----------YRA--SGAGGQHINKTDSAVRITHIPTGIVVQ 256
DL+ I Y A S A + +S V + G+ +Q
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD---VMSIESLVEVVFYR-GMTMQ 1794
Query: 257 CQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNILL 316
R + + M + G V F L
Sbjct: 1795 VAVPRDELGRSNYG----------------------MIAINPGRVAAS-----FSQEALQ 1827
Query: 317 KYVTRLSD-----VELIINNEKKLHKQEINILNKLIQRRILGEPIAYII-GKKEFYGLVL 370
V R+ VE I+N N+ N+ Q Y+ G L
Sbjct: 1828 YVVERVGKRTGWLVE-IVNY---------NVENQ--Q---------YVAAGDLR--AL-- 1862
Query: 371 NITSDVLIPRPETELLVDLIVKKTFEKKIKLLEM 404
D + T +L + I K +KI ++E+
Sbjct: 1863 ----DTV-----TNVL-NFI--KL--QKIDIIEL 1882
Score = 30.0 bits (67), Expect = 2.7
Identities = 22/120 (18%), Positives = 35/120 (29%), Gaps = 39/120 (32%)
Query: 461 YNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNA-- 518
Y + + ++N + D H K F SI +IV N
Sbjct: 1636 YKTSKAAQDVWN----------RADNHF-KDTYGF--------------SILDIVINNPV 1670
Query: 519 ----------SKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKS--WRDLSGIERVTQ 566
K + +N +I L + +FK S +R G+ TQ
Sbjct: 1671 NLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ 1730
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 48.9 bits (116), Expect = 8e-07
Identities = 23/158 (14%), Positives = 57/158 (36%), Gaps = 19/158 (12%)
Query: 379 PRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIA 438
L+++ + +++ GTG+G +A + + A DI A++ A
Sbjct: 34 ASTAAYFLIEIYNDGNIGGR-SVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETA 90
Query: 439 KKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPI 498
K+N + F+ ++ ++ + NPP+ H ++ +
Sbjct: 91 KRNCGG--------VNFMVADV----SEISGKYDTWIMNPPFGSVVK-HSDRAFIDKAFE 137
Query: 499 NALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ 536
++ YS G + ++ ++ + G + E
Sbjct: 138 TSMWIYSIGNAKARDFLR---REFSARGDVFREEKVYI 172
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif,
gamma-N6M-adenosine methyltrans S-adenosyl-methionine
binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Length = 878
Score = 48.8 bits (115), Expect = 4e-06
Identities = 33/227 (14%), Positives = 69/227 (30%), Gaps = 24/227 (10%)
Query: 303 KKSPLNIFETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYII-- 360
K P + E + + S+ E N+ + ++ LN L +R + G+ +A +I
Sbjct: 226 KSRPGRLLEEGRKIDFNVLFSEPEPNTNDNDIWNVNLLSSLNDLGRRILTGDELAELIHD 285
Query: 361 -----GKKEFYGLVLNITSDVLIPRPETELLVDLI---VKKTFEKKIKLLEMGTGSGAIA 412
E V ++L + + + + + + GSG +
Sbjct: 286 IATRGRGHEGV---------VPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLL 336
Query: 413 IAIAIYSKN--KIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL---QNY 467
++ N +I A DI L++ + +
Sbjct: 337 ATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPED 396
Query: 468 KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEI 514
+++V NPPY+ K + I + L +
Sbjct: 397 FANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGV 443
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 47.1 bits (112), Expect = 9e-06
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 407 GSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN 466
GSG IA+ A + A D+ + L +A++ A + I+F++++ +L
Sbjct: 213 GSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSW---IRFLRADA-RHLPR 268
Query: 467 YKKLFNIIVANPPY 480
+ + I+ANPP+
Sbjct: 269 FFPEVDRILANPPH 282
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 45.7 bits (108), Expect = 1e-05
Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 377 LIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALK 436
+I +P+ + + +K + L+ G G ++I ++ + +IS LK
Sbjct: 5 IIRQPQLYRFLKYCNESNLDKTV--LDCGAGGDLPPLSIF--VEDGYKTYGIEISDLQLK 60
Query: 437 IAKKNAKKKLTKYNIPIKFIKSN 459
A+ +++ N + K +
Sbjct: 61 KAENFSREN----NFKLNISKGD 79
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 45.2 bits (107), Expect = 2e-05
Identities = 18/103 (17%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 375 DVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFA 434
IP + V + + + +L++G G+G ++ + D+S+
Sbjct: 22 RKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPE-ATFTLVDMSEKM 80
Query: 435 LKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVAN 477
L+IAK + N+ +K+I+++ Y+ ++++ ++++V+
Sbjct: 81 LEIAKNRFRG-----NLKVKYIEAD-YSKY-DFEEKYDMVVSA 116
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 45.2 bits (107), Expect = 2e-05
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 380 RPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAK 439
P ++ + I+ + +++G+G GA++IA+A ++ I A D SK +IA
Sbjct: 26 APIYPIIAENIINRFGITAGTCIDIGSGPGALSIALA--KQSDFSIRALDFSKHMNEIAL 83
Query: 440 KNAKKK 445
KN
Sbjct: 84 KNIADA 89
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 44.6 bits (105), Expect = 4e-05
Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 14/127 (11%)
Query: 401 LLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIP--IKFIKS 458
+++ G G I A+ +IA DI + +A+ NA+ Y I I+FI
Sbjct: 82 VVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAE----VYGIADKIEFICG 134
Query: 459 NWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNA 518
++ K +++ +PP+ D+R + K+I N
Sbjct: 135 DFLLLASFLK--ADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEI---FRLSKKITNNI 189
Query: 519 SKYLVKN 525
+L +N
Sbjct: 190 VYFLPRN 196
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 44.5 bits (105), Expect = 4e-05
Identities = 24/168 (14%), Positives = 50/168 (29%), Gaps = 27/168 (16%)
Query: 364 EFYGLVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKI 423
+FY T LI + +T +LE+ G G +
Sbjct: 49 DFYDEGAADTYRDLIQDADGTSEAREFATRTGPVSGPVLELAAGMGRLTFPFL---DLGW 105
Query: 424 EIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPK 483
E+ A ++S L +K + ++ + + K+ F +V
Sbjct: 106 EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDM-SAFALDKR-FGTVV-------- 155
Query: 484 GDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531
+ IN L + + + + + ++L G L+
Sbjct: 156 ---------ISSGSINELDE-----ADRRGLYASVREHLEPGGKFLLS 189
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 43.4 bits (102), Expect = 6e-05
Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 18/129 (13%)
Query: 402 LEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWY 461
++ G+G +A + DI A+ K + IK
Sbjct: 27 VDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDR--VTLIKDGHQ 84
Query: 462 NNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKY 521
N + ++ N Y+P GD T + ++ + + +
Sbjct: 85 NMDKYIDCPVKAVMFNLGYLPSGDHS------------ISTRPETTIQALSKAM----EL 128
Query: 522 LVKNGLLLI 530
LV G++ +
Sbjct: 129 LVTGGIITV 137
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural
genomics, pyrococcus PSI-2, protein structure
initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm
3638}
Length = 373
Score = 44.7 bits (105), Expect = 6e-05
Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 13/144 (9%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIP-IKFIKS 458
+ +G +IA+ + K I DI + K +K A + I+
Sbjct: 175 DIFVLGDDDL-TSIALMLSGLPK-RIAVLDIDERLTKFIEKAANE----IGYEDIEIFTF 228
Query: 459 NWYNNL-QNYKKLFNIIVANPPYIPKG-DIHLNKG--DLRFEPINALTDYSNGLSSIKEI 514
+ L F+ + +PP + + +G L+ + SS+ +
Sbjct: 229 DLRKPLPDYALHKFDTFITDPPETLEAIRAFVGRGIATLKGPRCAGYFGITRRESSLDKW 288
Query: 515 VKNASKYLVKNGLLL--IEHGYNQ 536
+ L + +++ I +N+
Sbjct: 289 REIQKLLLNEFNVVITDIIRNFNE 312
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 44.2 bits (104), Expect = 6e-05
Identities = 8/67 (11%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKF 455
K + +++ G G G + + + + D + L A++ + +F
Sbjct: 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL----PYDSEF 76
Query: 456 IKSNWYN 462
++ +
Sbjct: 77 LEGDATE 83
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 43.7 bits (103), Expect = 7e-05
Identities = 19/151 (12%), Positives = 62/151 (41%), Gaps = 31/151 (20%)
Query: 382 ETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441
E + + ++ + + ++L++ G+G + +A + E++ D+ + L++A++
Sbjct: 26 EIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELA---ERGYEVVGLDLHEEMLRVARRK 82
Query: 442 AKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINAL 501
AK++ N+ I+F++ + + + F+ + F I
Sbjct: 83 AKER----NLKIEFLQGDVL-EIAFKNE-FDAVTM-----------------FFSTIMYF 119
Query: 502 TDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532
+ ++++ ++ L G+ + +
Sbjct: 120 DE-----EDLRKLFSKVAEALKPGGVFITDF 145
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump
domain, tRNA methyltransferase; HET: SAM; 1.95A
{Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Length = 373
Score = 44.0 bits (104), Expect = 8e-05
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 407 GSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK-KLTKYNIPIKFIKSNWYNNLQ 465
GSG I I +A+ + EII + + L A+ NA + IKFI+ + L
Sbjct: 227 GSGTILIELALRRYS-GEIIGIEKYRKHLIGAEMNALAAGVLDK---IKFIQGDA-TQLS 281
Query: 466 NYKKLFNIIVANPPY 480
Y + ++N PY
Sbjct: 282 QYVDSVDFAISNLPY 296
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 43.2 bits (102), Expect = 9e-05
Identities = 21/150 (14%), Positives = 54/150 (36%), Gaps = 31/150 (20%)
Query: 382 ETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441
++ +++ V+ L++ G+G + + A D+S+ L A+
Sbjct: 23 WSDFIIEKCVENNLVFD-DYLDLACGTGNLTENLC---PKFKNTWAVDLSQEMLSEAENK 78
Query: 442 AKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINAL 501
+ + + + + +NL +K F++I + N +
Sbjct: 79 FRSQ----GLKPRLACQDI-SNLNINRK-FDLITC-----------------CLDSTNYI 115
Query: 502 TDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531
D + +K+ K S +L + G+ + +
Sbjct: 116 IDSDD----LKKYFKAVSNHLKEGGVFIFD 141
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 43.2 bits (102), Expect = 9e-05
Identities = 27/157 (17%), Positives = 63/157 (40%), Gaps = 32/157 (20%)
Query: 375 DVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFA 434
D L+ V ++++ E ++ ++G G+G + +A + E+ D+S+
Sbjct: 12 DELMQDVPYPEWVAWVLEQ-VEPGKRIADIGCGTGTATLLLA----DHYEVTGVDLSEEM 66
Query: 435 LKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLR 494
L+IA++ A + N + F + L+ + + I +
Sbjct: 67 LEIAQEKAMET----NRHVDFWVQDM-RELELPEPVDAITIL------------------ 103
Query: 495 FEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531
+ +N L ++ +K+ +A++ L G LL +
Sbjct: 104 CDSLNYLQTEAD----VKQTFDSAARLLTDGGKLLFD 136
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 42.6 bits (100), Expect = 1e-04
Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 390 IVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKY 449
++ K +K+ K+L++ G G + + E++ DIS+ ++ A++ AK +
Sbjct: 31 LLMKYMKKRGKVLDLACGVGGFSFLLE---DYGFEVVGVDISEDMIRKAREYAKSR---- 83
Query: 450 NIPIKFIKSN 459
++FI +
Sbjct: 84 ESNVEFIVGD 93
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 42.3 bits (99), Expect = 2e-04
Identities = 25/157 (15%), Positives = 52/157 (33%), Gaps = 24/157 (15%)
Query: 380 RPETELLVDLIVKKTFEKKI-KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIA 438
R T ++ + ++L++ G+G +I + + + + D S LK A
Sbjct: 39 RSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLV---EEGFSVTSVDASDKMLKYA 95
Query: 439 KKNAKK-KLTKYNIPIKFIKSNWYNNLQNYK--KLFNIIVANPPYIPKGDIHLNKGDLRF 495
K + ++NW ++ F+ ++
Sbjct: 96 LKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICL-----------------G 138
Query: 496 EPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532
L D S + +KN + + GLL+I+H
Sbjct: 139 NSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 175
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 42.5 bits (100), Expect = 3e-04
Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 21/110 (19%)
Query: 424 EIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN---WYNNLQNYKKLFNIIVANPPY 480
E+I D S A++ AK+NA KL +KFI + LQ + F+I+V +PP
Sbjct: 242 EVIGIDKSPRAIETAKENA--KLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPA 299
Query: 481 IPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530
+ + L Y + + G+L+
Sbjct: 300 FVQH---------EKDLKAGLRAY-------FNVNFAGLNLVKDGGILVT 333
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase,
S-adenosyl-methionine, 23S ribosoma transferase; HET:
SAM; 1.70A {Thermus thermophilus}
Length = 393
Score = 42.3 bits (100), Expect = 3e-04
Identities = 19/131 (14%), Positives = 45/131 (34%), Gaps = 25/131 (19%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459
++L++ + G A+ A + +A D AL + + A + + +
Sbjct: 217 RVLDVYSYVGGFALRAA---RKGAYALAVDKDLEALGVLDQAALRL----GLRVDIRHGE 269
Query: 460 WYNNLQNYKKLFNIIVANPP-YIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNA 518
L+ + F+ ++ +PP + +L ++V+ A
Sbjct: 270 ALPTLRGLEGPFHHVLLDPPTLVK------RPEELP----AMKRHL-------VDLVREA 312
Query: 519 SKYLVKNGLLL 529
+ L + G L
Sbjct: 313 LRLLAEEGFLW 323
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 41.4 bits (97), Expect = 4e-04
Identities = 10/78 (12%), Positives = 26/78 (33%), Gaps = 3/78 (3%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459
++ ++G+ + IA ++ + A+K + I K N
Sbjct: 24 RIADIGSDHAYLPCFAVKNQTAS-FAIAGEVVDGPFQSAQKQVRSS--GLTEQIDVRKGN 80
Query: 460 WYNNLQNYKKLFNIIVAN 477
++ + I++A
Sbjct: 81 GLAVIEKKDAIDTIVIAG 98
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 41.6 bits (97), Expect = 4e-04
Identities = 31/162 (19%), Positives = 48/162 (29%), Gaps = 36/162 (22%)
Query: 397 KKIKLLEMGTGSGAIAIAI-----AIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNI 451
+IK+L +G G+G I + I A Y I + S + K+ K N+
Sbjct: 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENV 111
Query: 452 PIKFIKSNW-----YNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSN 506
+ K + + ++ I I L
Sbjct: 112 KFAWHKETSSEYQSRMLEKKELQKWDFIHM---------------------IQML----Y 146
Query: 507 GLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYG 548
+ I +K L N +LI S KL KYG
Sbjct: 147 YVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWD-KLWKKYG 187
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 40.3 bits (95), Expect = 7e-04
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 14/81 (17%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKI---EIIATDISKFALKIAKKNAKKKLTKYNIPIKFI 456
+ ++GTGSG +AIA K+ ++ATDIS ++ A++NA N I I
Sbjct: 63 TVADVGTGSGILAIAAH-----KLGAKSVLATDISDESMTAAEENAAL-----N-GIYDI 111
Query: 457 KSNWYNNLQNYKKLFNIIVAN 477
+ L + F++IVAN
Sbjct: 112 ALQKTSLLADVDGKFDLIVAN 132
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 40.8 bits (95), Expect = 7e-04
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 386 LVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKK 445
+I + ++ L+++G G G + +A K +II +D+S +K A+ +
Sbjct: 25 FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS 84
Query: 446 LTKY-NIP 452
Y N+
Sbjct: 85 PDTYKNVS 92
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 40.3 bits (95), Expect = 8e-04
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459
K+L++GTGSG +AIA K + + DI L A+ NAK+ + +F++ +
Sbjct: 123 KVLDLGTGSGVLAIAAE---KLGGKALGVDIDPMVLPQAEANAKRN----GVRPRFLEGS 175
Query: 460 WYNNLQNYKKLFNIIVAN 477
L F+++VAN
Sbjct: 176 LEAALPFGP--FDLLVAN 191
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 40.4 bits (94), Expect = 0.001
Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Query: 368 LVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIA 427
+ VL R + ++ + + G + +A+ + ++++
Sbjct: 90 VFYERLPAVLATRERHGHFRRAL-QRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVG 148
Query: 428 TDISKFALKIAKKNAKK 444
D AL A + A
Sbjct: 149 IDYDPEALDGATRLAAG 165
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 39.5 bits (92), Expect = 0.001
Identities = 23/157 (14%), Positives = 49/157 (31%), Gaps = 24/157 (15%)
Query: 374 SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKF 433
S+ +I RP + D + + + + +++ G+G +A ++ A D+ +
Sbjct: 1 SNAMIKRP-IHMSHDFL-AEVLDDESIVVDATMGNGNDTAFLA---GLSKKVYAFDVQEQ 55
Query: 434 ALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDL 493
AL + + + I N ++ + N Y+P D
Sbjct: 56 ALGKTSQRLSDLGIEN---TELILDGHENLDHYVREPIRAAIFNLGYLPSAD-------- 104
Query: 494 RFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530
+ E ++ L G L I
Sbjct: 105 --------KSVITKPHTTLEAIEKILDRLEVGGRLAI 133
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 39.1 bits (91), Expect = 0.002
Identities = 9/65 (13%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 380 RPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAK 439
+ + ++ +K+ ++L++G G G ++ + + + DIS+ ++ K
Sbjct: 36 DSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLS---RTGYKAVGVDISEVMIQKGK 92
Query: 440 KNAKK 444
+ +
Sbjct: 93 ERGEG 97
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus,
methyltransferase, adoMet, structural genomics; 1.80A
{Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB:
1wxw_A 2cww_A*
Length = 382
Score = 39.7 bits (93), Expect = 0.002
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 22/109 (20%)
Query: 424 EIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN---WYNNLQNYKKLFNIIVANPPY 480
E++A D S AL+ A++NA +L ++ +++N L+ + F+++V +PP
Sbjct: 233 EVVAVDSSAEALRRAEENA--RLNGLG-NVRVLEANAFDLLRRLEKEGERFDLVVLDPPA 289
Query: 481 IPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLL 529
KG + A Y KE+ A K L + G+L
Sbjct: 290 FAKGKKDVE---------RAYRAY-------KEVNLRAIKLLKEGGILA 322
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural
genomics, riken structural genomics/proteomics in RSGI;
HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Length = 392
Score = 39.1 bits (90), Expect = 0.003
Identities = 17/89 (19%), Positives = 35/89 (39%)
Query: 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIK 454
+ +K+ + + SG AI + + + A DIS A++I K+N K +
Sbjct: 50 LGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEI 109
Query: 455 FIKSNWYNNLQNYKKLFNIIVANPPYIPK 483
+ + + F+ + +P P
Sbjct: 110 HGMEANFFLRKEWGFGFDYVDLDPFGTPV 138
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 38.3 bits (89), Expect = 0.003
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 375 DVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFA 434
+ L +L K + + +E+G G+G A+ + I + S+
Sbjct: 25 ERWFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERM 77
Query: 435 LKIAKKNA 442
+IA+K
Sbjct: 78 AEIARKRG 85
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 37.8 bits (88), Expect = 0.004
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 390 IVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKK--LT 447
I+ ++ ++L++G GSG I++ +A + DI+ A+++A+ A+
Sbjct: 23 IIHNYLQEDDEILDIGCGSGKISLELA---SKGYSVTGIDINSEAIRLAETAARSPGLNQ 79
Query: 448 KYNIPIKFIKSN 459
K +F N
Sbjct: 80 KTGGKAEFKVEN 91
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 37.8 bits (88), Expect = 0.005
Identities = 23/150 (15%), Positives = 52/150 (34%), Gaps = 35/150 (23%)
Query: 382 ETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441
E + DL+ +T E LL++ G+G K + ++S+ L A+K
Sbjct: 26 EASDIADLVRSRTPEAS-SLLDVACGTGTHLEHFT---KEFGDTAGLELSEDMLTHARKR 81
Query: 442 AKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINAL 501
+ + + + +K F+ +V+ F + L
Sbjct: 82 LPD--------ATLHQGDM-RDFRLGRK-FSAVVSM-----------------FSSVGYL 114
Query: 502 TDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531
+ V + +++L G++++E
Sbjct: 115 KTTEE----LGAAVASFAEHLEPGGVVVVE 140
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 37.9 bits (88), Expect = 0.005
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444
+LL++G+ + I + IA ++ + A KN +
Sbjct: 24 RLLDVGSDHAYLPIFLLQMGYCD-FAIAGEVVNGPYQSALKNVSE 67
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 37.3 bits (87), Expect = 0.005
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 380 RPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAK 439
RPE E L ++ K K +++ G G+G + + ++ DI+ ALK K
Sbjct: 5 RPE-EYLPNIFEGK----KGVIVDYGCGNGFYCKYLL---EFATKLYCIDINVIALKEVK 56
Query: 440 KNAK 443
+
Sbjct: 57 EKFD 60
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 38.0 bits (87), Expect = 0.005
Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 379 PRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIA 438
P E L ++ + F + +L++G G + ++IA ++ DI + A
Sbjct: 30 PSCEDGRL-RVLKPEWFRGR-DVLDLGCNVGHLTLSIACKWGPS-RMVGLDIDSRLIHSA 86
Query: 439 KKNAKK 444
++N +
Sbjct: 87 RQNIRH 92
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 37.9 bits (88), Expect = 0.005
Identities = 19/153 (12%), Positives = 52/153 (33%), Gaps = 35/153 (22%)
Query: 382 ETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441
E L L+ ++ K LL++ G+G +A + + ++S L IA++
Sbjct: 36 EAADLAALV-RRHSPKAASLLDVACGTGMHLRHLA---DSFGTVEGLELSADMLAIARRR 91
Query: 442 AKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINAL 501
+ + ++ F+ + F I L
Sbjct: 92 NPD--------AVLHHGDM-RDFSLGRR-FSAVTCM-----------------FSSIGHL 124
Query: 502 TDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534
+ + ++ + +++ +G++++E +
Sbjct: 125 AGQAE----LDAALERFAAHVLPDGVVVVEPWW 153
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 37.9 bits (88), Expect = 0.005
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 380 RPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAK 439
T V I + K+ ++G G+G + +A K +I D+ ++I
Sbjct: 31 PEATRKAVSFINE--LTDDAKIADIGCGTGGQTLFLA--DYVKGQITGIDLFPDFIEIFN 86
Query: 440 KNAKKK 445
+NA K
Sbjct: 87 ENAVKA 92
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 37.8 bits (87), Expect = 0.006
Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 16/109 (14%)
Query: 359 IIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKT---FEKKI-------------KLL 402
I E ++ ++ +I + T E +L
Sbjct: 56 ISRVIEPGDELIVSGKSFIVSDFSPMYFGRVIRRNTQIISEIDASYIIMRCGLRPGMDIL 115
Query: 403 EMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNI 451
E+G GSG ++ I K + + + LK A N + N+
Sbjct: 116 EVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNV 164
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 37.5 bits (87), Expect = 0.006
Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459
LL++G+ + I + + K IA ++ + + A KN + K I +N
Sbjct: 18 ILLDVGSDHAYLPIELVERGQIK-SAIAGEVVEGPYQSAVKNVEAHGLKEKIQ--VRLAN 74
Query: 460 WYNNLQNYKKLFNIIVAN 477
+ ++ I +A
Sbjct: 75 GLAAFEETDQVSVITIAG 92
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes}
SCOP: c.66.1.45
Length = 344
Score = 38.2 bits (89), Expect = 0.006
Identities = 30/208 (14%), Positives = 65/208 (31%), Gaps = 38/208 (18%)
Query: 308 NIFETNILLKYVTRLSDVELIINNEKKLHK--QEINILNKLIQRRILGEPIAYIIGKK-- 363
++ET L L EL + KL + I + N + + + + K
Sbjct: 43 AVYETGENLFQKEVLQKEELSSEKQLKLQASYESIELEN--FSNEEIRKGLQLALLKGMK 100
Query: 364 ------EFYGLVLNITSDVLIPRPETELLVDLIVKKTFEKK-IKLLEMGTGSGAIAIAIA 416
T P ++ L+ K +KK + +L+ G+ + +
Sbjct: 101 HGIQVNHQM------T-----PDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVI 149
Query: 417 IYSKNK----IEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN-YKKLF 471
+ K + D+ + +A A L + + + + L N
Sbjct: 150 NQLELKGDVDVHASGVDVDDLLISLALVGAD--LQRQKMTLL-----HQDGLANLLVDPV 202
Query: 472 NIIVANPPY--IPKGDIHLNKGDLRFEP 497
++++++ P P + R E
Sbjct: 203 DVVISDLPVGYYPDDENAKTFELCREEG 230
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET:
5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27
d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A*
2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Length = 421
Score = 38.1 bits (88), Expect = 0.007
Identities = 22/155 (14%), Positives = 45/155 (29%), Gaps = 23/155 (14%)
Query: 379 PRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIA 438
P + +V L + ++LE G A + +I AL +
Sbjct: 24 PPEVVDFMVSLAEAP---RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP 80
Query: 439 KKNAKKKLTKYNIPIK-FIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEP 497
+ F+ + F++I+ NPPY G+ +
Sbjct: 81 PWA--------EGILADFLLWEP-------GEAFDLILGNPPYGIVGEASKYPIHVFKAV 125
Query: 498 INALTDYSNGLSSIKEI----VKNASKYLVKNGLL 528
+ + + ++ A + L G+L
Sbjct: 126 KDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVL 160
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 37.1 bits (86), Expect = 0.008
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT 447
+LE G G+G + + + + S+ IAK+ K+ +
Sbjct: 48 NVLEFGVGTGNLTNKLL---LAGRTVYGIEPSREMRMIAKEKLPKEFS 92
>2b78_A Hypothetical protein SMU.776; structure genomics,
methyltransferase, caries, structural genomics, unknown
function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9
c.66.1.51 PDB: 3ldf_A*
Length = 385
Score = 37.6 bits (88), Expect = 0.009
Identities = 16/149 (10%), Positives = 55/149 (36%), Gaps = 25/149 (16%)
Query: 424 EIIATDISKFALKIAKKNAKKKLTKYNIP-IKFIKSN---WYNNLQNYKKLFNIIVANPP 479
+ D++K + ++ + + ++ + + + ++ + + ++II+ +PP
Sbjct: 237 ATTSVDLAKRSRALSLAHF--EANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPP 294
Query: 480 YIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNL 539
+ NK ++ + DY ++++ + L +NGL++ +
Sbjct: 295 SFAR-----NKKEVF----SVSKDY-------HKLIRQGLEILSENGLIIA---STNAAN 335
Query: 540 VRKLLFKYGFSDIKSWRDLSGIERVTQGK 568
+ FK + + ++
Sbjct: 336 MTVSQFKKQIEKGFGKQKHTYLDLQQLPS 364
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent
methyltransferase fold; 2.00A {Escherichia coli K12}
Length = 396
Score = 37.7 bits (88), Expect = 0.009
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 24/112 (21%)
Query: 424 EIIATDISKFALKIAKKNAKKKLTKYNIP-IKFIKSN---WYNNLQNYKKLFNIIVANPP 479
++++ D S+ AL IA++N +L K ++ +F++ + ++ + F++IV +PP
Sbjct: 245 QVVSVDTSQEALDIARQNV--ELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPP 302
Query: 480 -YIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530
++ NK L A Y K+I A + L + G+LL
Sbjct: 303 KFVE------NKSQLM----GACRGY-------KDINMLAIQLLNEGGILLT 337
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 37.3 bits (86), Expect = 0.011
Identities = 24/154 (15%), Positives = 60/154 (38%), Gaps = 32/154 (20%)
Query: 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFI 456
K+L++G G G ++ ++ ++ + D ++ ++ + +K+ N+ I
Sbjct: 120 SPCKVLDLGCGQGRNSLYLS---LLGYDVTSWDHNENSIAFLNETKEKE----NLNISTA 172
Query: 457 KSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVK 516
+ N N ++ ++ IV+ + + LN+ + I+K
Sbjct: 173 LYD-INAA-NIQENYDFIVSTVVF-----MFLNRER------------------VPSIIK 207
Query: 517 NASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFS 550
N ++ G LI + ++ L F + F+
Sbjct: 208 NMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFA 241
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 37.2 bits (86), Expect = 0.011
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 380 RPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAK 439
T + I +K + ++G G+G + +A ++ D + I
Sbjct: 31 PEVTLKALSFI--DNLTEKSLIADIGCGTGGQTMVLA--GHVTGQVTGLDFLSGFIDIFN 86
Query: 440 KNAKKK 445
+NA++
Sbjct: 87 RNARQS 92
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Length = 385
Score = 37.3 bits (87), Expect = 0.013
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 416 AIYSKNKIEIIATDISKFALKIAKKNAKK-KLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474
I +++K +I DI + ++ IA++NA+ + +Y I+F + ++ + F I
Sbjct: 251 KIDNESKFKIYGYDIDEESIDIARENAEIAGVDEY---IEFNVGDA-TQFKSEDE-FGFI 305
Query: 475 VANPPY 480
+ NPPY
Sbjct: 306 ITNPPY 311
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 36.3 bits (84), Expect = 0.015
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 372 ITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDIS 431
+TS + + L+ + K E+ +L++ TG G +A A A + K +++A D++
Sbjct: 15 VTSQIHAKGSDLAKLMQIAALKGNEE---VLDVATGGGHVANAFAPFVK---KVVAFDLT 68
Query: 432 KFALKIAKKNAKKK 445
+ LK+A+ +
Sbjct: 69 EDILKVARAFIEGN 82
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 35.9 bits (83), Expect = 0.020
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKK 445
++L++G G+G A+A + E I D +K +++A A++K
Sbjct: 24 RVLDIGAGAGHTALAFS---PYVQECIGVDATKEMVEVASSFAQEK 66
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating
dehydrogenase, lysine biosyn; 1.85A {Thermus
thermophilus} PDB: 3asj_A* 3ah3_A
Length = 333
Score = 36.0 bits (84), Expect = 0.025
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 411 IAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT---KYNI 451
+AIA A+ SK E I + AL+IA+ +K L K N+
Sbjct: 134 VAIADAVISKKASERIG----RAALRIAEGRPRKTLHIAHKANV 173
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase,
transferase; HET: SAH; 1.96A {Streptococcus mutans}
Length = 384
Score = 36.1 bits (84), Expect = 0.028
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 10/62 (16%)
Query: 422 KIEIIATDISKFALKIAKKNAKK-KLTKYNIPIKFIKSNWYNNLQNYKKLFN--IIVANP 478
+++I D ++IA+KNA++ L +K + LQ++K ++++NP
Sbjct: 256 QLDISGFDFDGRMVEIARKNAREVGLEDV---VKLKQM----RLQDFKTNKINGVLISNP 308
Query: 479 PY 480
PY
Sbjct: 309 PY 310
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 35.0 bits (81), Expect = 0.034
Identities = 8/44 (18%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 401 LLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444
+++G G+G + + +A + + A D + A+ + N ++
Sbjct: 37 AVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQR 77
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170,
putative RNA methylase, PSI,MCSG, structu genomics;
1.50A {Listeria monocytogenes str}
Length = 393
Score = 35.7 bits (83), Expect = 0.035
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 420 KNKIEIIATDISKFALKIAKKNAKK-KLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANP 478
+ II DI ++IAK+NA + L I F + + Q + + ++VANP
Sbjct: 261 DQPLNIIGGDIDARLIEIAKQNAVEAGLGDL---ITFRQLQ-VADFQTEDE-YGVVVANP 315
Query: 479 PY 480
PY
Sbjct: 316 PY 317
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 35.2 bits (80), Expect = 0.046
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 16/102 (15%)
Query: 359 IIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKT----------------FEKKIKLL 402
I+GK L + ++ RP E V L+ + T +L
Sbjct: 51 IVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMILSMMDINPGDTVL 110
Query: 403 EMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444
E G+GSG +++ ++ ++ +I+ ++ K +AKKN K
Sbjct: 111 EAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH 152
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 34.9 bits (80), Expect = 0.053
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 370 LNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATD 429
+ + + L E L ++ + +L++G G G I A +++ D
Sbjct: 20 MPRSKEGLKAAGEWHELKKMLPDFNQKT---VLDLGCGFGWHCIYAA--EHGAKKVLGID 74
Query: 430 ISKFALKIAKKNAKKKLTKY 449
+S+ L AK+ + Y
Sbjct: 75 LSERMLTEAKRKTTSPVVCY 94
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 35.6 bits (81), Expect = 0.056
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 390 IVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKY 449
++++ + ++ G GSG++ ++ Y + II DIS L A K KL K
Sbjct: 716 HIRESSASTL--VDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKE 773
Query: 450 NIPIKFIK 457
+K
Sbjct: 774 ACNVKSAT 781
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 35.0 bits (80), Expect = 0.056
Identities = 11/45 (24%), Positives = 24/45 (53%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444
++++ G GSGA+ +A + ++ A + + K+A+ N K
Sbjct: 115 RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK 159
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 34.8 bits (80), Expect = 0.061
Identities = 11/57 (19%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 390 IVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKL 446
+++ + ++L++G G+G ++ + + E++ D SK L++A++ K +
Sbjct: 47 FLEEYLKNPCRVLDLGGGTGKWSLFLQ---ERGFEVVLVDPSKEMLEVAREKGVKNV 100
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 34.4 bits (79), Expect = 0.065
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 392 KKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNI 451
F + LLE+G+ G + ++ +I + S+ A+ A+ K +T +
Sbjct: 37 FTPFFRPGNLLELGSFKGDFTSRLQ---EHFNDITCVEASEEAISHAQGRLKDGITYIHS 93
Query: 452 PIKFIKSN 459
+ +
Sbjct: 94 RFEDAQLP 101
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 34.1 bits (79), Expect = 0.066
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 401 LLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444
++++G GSG + + IA K + A D A+++ K+N K
Sbjct: 39 VVDVGCGSGGMTVEIAKRCK---FVYAIDYLDGAIEVTKQNLAK 79
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 34.2 bits (78), Expect = 0.068
Identities = 6/56 (10%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 390 IVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKK 445
+++ + ++L +G G+ A++ + + + + D S + +
Sbjct: 35 LLEPELRPEDRILVLGCGNSALSYEL--FLGGFPNVTSVDYSSVVVAAMQACYAHV 88
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 34.4 bits (78), Expect = 0.077
Identities = 10/45 (22%), Positives = 23/45 (51%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444
++LE G GSGA+ +++ ++I+ + + A++N
Sbjct: 102 RVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSG 146
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA
methyltransferase, ribosome RNA, SAH, RLML; HET: SAH
OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Length = 703
Score = 35.0 bits (81), Expect = 0.078
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 410 AIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK-KLTKYNIPIKFIKSNWYNNLQN-- 466
A A ++ +D ++ A+ NA+ + + I F + L N
Sbjct: 244 AQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGEL---ITFEVKD-VAQLTNPL 299
Query: 467 YKKLFNIIVANPPY 480
K + +++NPPY
Sbjct: 300 PKGPYGTVLSNPPY 313
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics,
structural genomics consortium; HET: SAH; 1.86A {Homo
sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A*
1p1c_A* 1p1b_A* 1khh_A*
Length = 236
Score = 33.7 bits (76), Expect = 0.11
Identities = 28/188 (14%), Positives = 63/188 (33%), Gaps = 24/188 (12%)
Query: 382 ETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441
ET + + K ++LE+G G A + ++ II + + + +
Sbjct: 46 ETPYM-HALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWII--ECNDGVFQRLRDW 102
Query: 442 AKKKLTKYNIPIKFIKSNWYNNLQN-YKKLFNIIVANPPYIPKGDIH------------- 487
A ++ K + +K W + F+ I+ + + + H
Sbjct: 103 APRQTHK----VIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFR 158
Query: 488 LNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKY 547
L K N + S +I + V L+E G+ + N+ +++
Sbjct: 159 LLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPA---LLEAGFRRENIRTEVMALV 215
Query: 548 GFSDIKSW 555
+D + +
Sbjct: 216 PPADCRYY 223
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 33.5 bits (77), Expect = 0.11
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKK 445
+L++GTG+G ++ K ++ A D+ + + A + K
Sbjct: 40 TVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKL 85
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 33.8 bits (77), Expect = 0.11
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443
++E G GSGA+ + +A + +++ +I + K+A +N K
Sbjct: 96 FIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIK 139
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 33.5 bits (76), Expect = 0.12
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443
L++ G+G ++ + +I D+SK AL+IA K
Sbjct: 59 PLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENT 99
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 33.2 bits (75), Expect = 0.20
Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 389 LIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKI-EIIATDISKFALKIAKKNAKKKLT 447
+++ ++ +L++G G G + Y + I E DI++ ++ A+ A+
Sbjct: 56 CLIRLYTKRGDSVLDLGCGKGGDLLK---YERAGIGEYYGVDIAEVSINDARVRARNM-- 110
Query: 448 KYNIPIKFIKSNWYNNLQNYKKLFNIIVAN 477
K + F + Y + K F++I +
Sbjct: 111 KRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 32.6 bits (74), Expect = 0.26
Identities = 25/182 (13%), Positives = 56/182 (30%), Gaps = 59/182 (32%)
Query: 393 KTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIP 452
F+ ++L++G G G + + + IE I DI++ +K +
Sbjct: 37 PYFKGCRRVLDIGCGRGEF---LELCKEEGIESIGVDINEDMIKFCEGK----------- 82
Query: 453 IKFIKSNWYNNLQNYK-KLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSI 511
+KS+ L++ K + ++ + L +
Sbjct: 83 FNVVKSDAIEYLKSLPDKYLDGVMI------------------SHFVEHLDP-----ERL 119
Query: 512 KEIVKNASKYLVKNGLLLIE--------------------HGYNQSNLVRKLLFKYGFSD 551
E++ + + ++IE + L + +L GF D
Sbjct: 120 FELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETL-KFILEYLGFRD 178
Query: 552 IK 553
+K
Sbjct: 179 VK 180
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 33.1 bits (75), Expect = 0.26
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTK 448
+L++G G+G + ++I D+ L++A+K + K
Sbjct: 86 TVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEK 134
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 32.2 bits (74), Expect = 0.28
Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440
+T L+ L+ + + + + G G G + A ++ D + ++ A++
Sbjct: 42 RQTGRLLYLLARIKQPQLV--VVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARR 99
Query: 441 NAKK 444
Sbjct: 100 MLHD 103
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine,
methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A
{Escherichia coli}
Length = 369
Score = 32.6 bits (75), Expect = 0.30
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 383 TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNA 442
+++ + T K LLE+ G+G ++A+A ++AT+I+K ++ A+ N
Sbjct: 199 NIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFD---RVLATEIAKPSVAAAQYNI 255
Query: 443 KK 444
Sbjct: 256 AA 257
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 32.2 bits (73), Expect = 0.31
Identities = 10/45 (22%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444
+++++G G G + + S + +I D+S +L+IA++ +
Sbjct: 32 RVIDLGCGQGNLLKILLKDSFFE-QITGVDVSYRSLEIAQERLDR 75
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA
modification enzyme, guanine 26, N(2),N(2)-dimethyltran
structural genomics; 1.90A {Pyrococcus horikoshii} SCOP:
c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Length = 378
Score = 32.9 bits (74), Expect = 0.31
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 380 RPETELLVDLIVK-KTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIA 438
P L D++V +L+ + +G I A+ + + E+ DIS+ A ++
Sbjct: 29 NPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETPAE-EVWLNDISEDAYELM 87
Query: 439 KKNAK 443
K+N
Sbjct: 88 KRNVM 92
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 32.4 bits (74), Expect = 0.31
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 389 LIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444
++K ++ ++L++G SGA+ AI +N + + A + AK+
Sbjct: 24 NLLKHIKKEWKEVLDIGCSSGALGAAIK---ENGTRVSGIEAFPEAAEQAKEKLDH 76
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 32.1 bits (73), Expect = 0.36
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 387 VDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444
I+ + K+L++G+G G + I K DI + +A +
Sbjct: 44 TKKILSDIELNENSKVLDIGSGLGGGCMYIN--EKYGAHTHGIDICSNIVNMANERVSG 100
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 31.9 bits (73), Expect = 0.38
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Query: 376 VLIPRPETELLVDLIVKKTFEKKIK-LLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFA 434
+ P T L+ + T + + +G + + I + + D
Sbjct: 34 LPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEH 93
Query: 435 LKIAKKNAKK 444
+ AK ++
Sbjct: 94 QRQAKALFRE 103
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 32.1 bits (73), Expect = 0.39
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 391 VKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443
+ K +++M G G +IA N +I A DI+ A+++ KKN K
Sbjct: 189 IMKKVSLNDVVVDMFAGVGPFSIACK----NAKKIYAIDINPHAIELLKKNIK 237
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative
metabolism, allostery, decarboxylase, allosteric enzyme,
magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A
3blv_A*
Length = 349
Score = 32.2 bits (74), Expect = 0.39
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 411 IAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT---KYNI 451
+ ++ + ++ K E IA +FA AKK +K +T K NI
Sbjct: 147 VVESLKVMTRPKTERIA----RFAFDFAKKYNRKSVTAVHKANI 186
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus
tokodaii} SCOP: c.77.1.1
Length = 336
Score = 32.2 bits (74), Expect = 0.42
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 411 IAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT---KYNI 451
+A+ + I ++ E IA K L A + +KK+T K N+
Sbjct: 134 VAVGMKIITRFASERIA----KVGLNFALRR-RKKVTCVHKANV 172
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 32.2 bits (73), Expect = 0.42
Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 391 VKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYN 450
+ K + +++M G G +++ IA+ K ++IA + + K +N +
Sbjct: 119 MAKVAKPDELVVDMFAGIGHLSLPIAV--YGKAKVIAIEKDPYTFKFLVENIHLNKVEDR 176
Query: 451 IPIKFIKSNWYNNLQNYKKLFNIIVANPPY 480
+ N N + + + I+
Sbjct: 177 M----SAYNMDNRDFPGENIADRILMGYVV 202
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel,
structural genomics, PSI-2 structure initiative; HET:
MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP:
c.66.1.51
Length = 332
Score = 32.1 bits (73), Expect = 0.48
Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 30/167 (17%)
Query: 406 TGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNI-PIKFIKSN---WY 461
TG ++ A A E+ D SK A+ AK+N L PI++I + +
Sbjct: 164 TGVASLVAAAA-----GAEVTHVDASKKAIGWAKENQ--VLAGLEQAPIRWICEDAMKFI 216
Query: 462 NNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKY 521
+ ++II+ +PP +G G+ + L D+ + ++ +
Sbjct: 217 QREERRGSTYDIILTDPPKFGRG----THGE-----VWQLFDH------LPLMLDICREI 261
Query: 522 LVKNGLLLI--EHGYNQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQ 566
L L L+ + S L + ++ E V +
Sbjct: 262 LSPKALGLVLTAYSIRASFYSMHELMRETMRGAG--GVVASGELVIR 306
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein,
isocitrate/isopropylmalate dehydrogenase-like fold,
oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus
thiooxidans}
Length = 429
Score = 31.9 bits (73), Expect = 0.50
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
Query: 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440
PE E ++ + ++ KI+ + AI I S E + + ++ A +
Sbjct: 170 PEAEKIIRFLREEMGVTKIRF------PDSSAIGIKPVSTEGSE----RLIRRTIQYALE 219
Query: 441 NAKKKLT---KYNI 451
+ K ++ K NI
Sbjct: 220 HGKPSVSLVHKGNI 233
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 31.5 bits (72), Expect = 0.54
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440
P L+ ++K KK +E+G +G + A+ + +I A D + A +I
Sbjct: 56 PLAGQLMSFVLKLVNAKKT--IEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLP 113
Query: 441 NAKK 444
+K
Sbjct: 114 FIRK 117
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.58
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 15/69 (21%)
Query: 10 EKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNY-----KKINEDIIT 64
E+ KRL+ELD K + ++ KK E E K + I
Sbjct: 92 EEQRKRLQELD--AASKVMEQEWREKAKKDLE--------EWNQRQSEQVEKNKINNRIA 141
Query: 65 AKEMLNDLE 73
K +
Sbjct: 142 DKAFYQQPD 150
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 31.2 bits (71), Expect = 0.61
Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440
E L+ + + KK L++GT +G A+A+A+ ++ ++ ++ +
Sbjct: 55 CEQAQLLANLARLIQAKKA--LDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRP 112
Query: 441 NAKK 444
++
Sbjct: 113 LWRQ 116
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 31.3 bits (70), Expect = 0.62
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 401 LLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIP-IKFIKSN 459
+++GTG G +AI +N I D K L K KK +K + + F+ +
Sbjct: 28 HIDLGTGDGRNIYKLAINDQN-TFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAA 86
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 31.1 bits (71), Expect = 0.71
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 378 IPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKI 437
I T L+ +++ K I LE+GT G ++ A S + I + + ++ ++
Sbjct: 54 IVDRLTLDLIKQLIRMNNVKNI--LEIGTAIGYSSMQFASISDD-IHVTTIERNETMIQY 110
Query: 438 AKKNAKK 444
AK+N
Sbjct: 111 AKQNLAT 117
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 31.0 bits (71), Expect = 0.72
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440
P + L+V+ + I LE+GT G I +A + ++ + S+ IA+
Sbjct: 44 PTQGKFLQLLVQIQGARNI--LEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARS 101
Query: 441 NAKK 444
N ++
Sbjct: 102 NIER 105
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 31.1 bits (70), Expect = 0.73
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444
K++++G G G + +++ + K+ +I D+S L+ AK K
Sbjct: 32 KVIDLGCGEGNL-LSLLLKDKSFEQITGVDVSYSVLERAKDRLKI 75
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium,
manganese, NAD, oxidoreductase; HET: NAD; 2.00A
{Pseudomonas putida} PDB: 3fmx_X*
Length = 364
Score = 31.4 bits (72), Expect = 0.73
Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 411 IAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT 447
I I +I+++ ++ I K+A +A+K +K +T
Sbjct: 156 IVIQESIFTRRGVDRIL----KYAFDLAEKRERKHVT 188
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 31.3 bits (71), Expect = 0.74
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444
++L++G+GSG + A + I D+S AK+ A++
Sbjct: 39 RILDLGSGSGEMLCTWA--RDHGITGTGIDMSSLFTAQAKRRAEE 81
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 31.4 bits (72), Expect = 0.79
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 405 GTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440
G G I I A+ + +IA D+ L +A++
Sbjct: 182 GLGHVGIQILRAVSAAR---VIAVDLDDDRLALARE 214
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 30.9 bits (70), Expect = 0.80
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444
LE+G +GA +A + K + D+ A+ A + K+
Sbjct: 54 NGLEIGCAAGAFTEKLAPHCK---RLTVIDVMPRAIGRACQRTKR 95
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 31.1 bits (71), Expect = 0.81
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440
PE + ++++ T KK+ LE+GT +G A+A+++ + ++I DI++ K A
Sbjct: 46 PEQAQFMQMLIRLTRAKKV--LELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHP 103
Query: 441 NAKK 444
++
Sbjct: 104 YWRE 107
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 30.8 bits (70), Expect = 0.89
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440
+ + +++K K +E+G +G +A A+ +I+A DI+K ++
Sbjct: 65 ADEGQFLSMLLKLINAKNT--MEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLP 122
Query: 441 NAKK 444
KK
Sbjct: 123 VIKK 126
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 30.8 bits (70), Expect = 0.91
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440
PE ++++ K + K+I +E+GT +G ++ A +I+ D+S+ +A+K
Sbjct: 46 PEEGQFLNILTKISGAKRI--IEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARK 103
Query: 441 NAKK 444
K+
Sbjct: 104 YWKE 107
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative
metabolism, allostery, decarboxylase, allosteric enzyme,
magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B*
3blv_B
Length = 354
Score = 31.1 bits (71), Expect = 1.0
Identities = 6/44 (13%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 411 IAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT---KYNI 451
+ +I + +++ E + ++A + A+ + ++ K I
Sbjct: 153 VVQSIKLITRDASERVI----RYAFEYARAIGRPRVIVVHKSTI 192
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural genomics,
nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Length = 233
Score = 30.7 bits (70), Expect = 1.0
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 381 PETELLVDLIVKKTFEKKIKLLEMGTGSG--AIAIAIAIYSKNKIEIIATDISKFALKIA 438
+ ++K +I LE+GT G AI +A A+ + I++ + + + A
Sbjct: 40 LLGMESLLHLLKMAAPARI--LEIGTAIGYSAIRMAQAL---PEATIVSIERDERRYEEA 94
Query: 439 KKNAKK 444
K+ K
Sbjct: 95 HKHVKA 100
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc,
oxidoreductase; HET: MSE; 1.85A {Sulfolobus
solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A
1nvg_A 3i4c_A 2eer_A*
Length = 347
Score = 30.7 bits (70), Expect = 1.2
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 405 GTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440
G G+ A+ IA A+ II D+ + A++ AK+
Sbjct: 182 GLGTMAVQIAKAVSGAT---IIGVDVREEAVEAAKR 214
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 30.2 bits (68), Expect = 1.2
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNA 442
LLE+G G+G + + + + S+ L + ++ A
Sbjct: 39 SLLEVGAGTGYWLRRLPYP-----QKVGVEPSEAMLAVGRRRA 76
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 30.3 bits (69), Expect = 1.2
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440
PE L+ L+VK KK+ +++GT +G AIA+ + +I D+ + + +AK+
Sbjct: 50 PEQAQLLALLVKLMQAKKV--IDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKE 107
Query: 441 NAKK 444
+K
Sbjct: 108 YWEK 111
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer
aging, hydrolase; HET: FLC; 2.00A {Sulfolobus
acidocaldarius} PDB: 3crw_1*
Length = 551
Score = 30.8 bits (69), Expect = 1.3
Identities = 15/80 (18%), Positives = 30/80 (37%)
Query: 379 PRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIA 438
R E L D +++ + L TGSG ++ + + K +++ +
Sbjct: 4 LRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPI 63
Query: 439 KKNAKKKLTKYNIPIKFIKS 458
++ K K NI F+
Sbjct: 64 YRDLTKIREKRNITFSFLVG 83
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 30.3 bits (69), Expect = 1.3
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440
+ L+V+ T K+I LE+GT G I +A +++ + ++A++
Sbjct: 49 ANQGQFLALLVRLTQAKRI--LEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARE 106
Query: 441 NAKK 444
N +
Sbjct: 107 NLQL 110
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 30.3 bits (69), Expect = 1.3
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440
PE + L++ T K++ LE+G G A+A+A+ +IIA D A IAKK
Sbjct: 58 PEQAQFLGLLISLTGAKQV--LEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKK 115
Query: 441 NAKK 444
+K
Sbjct: 116 YWQK 119
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor
methylation; HET: SAH; 2.00A {Salmonella typhimurium}
SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Length = 274
Score = 30.3 bits (69), Expect = 1.4
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 411 IAIAIAIY---SKNKIEIIATDISKFALKIAKK 440
IAI +A + + ++ A+DI L+ A+
Sbjct: 123 IAITLADALGMAPGRWKVFASDIDTEVLEKARS 155
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 30.2 bits (68), Expect = 1.4
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKY 449
+++++G G G ++ D+S+ L A+ Y
Sbjct: 46 RIVDLGCGFGWFCRWAH--EHGASYVLGLDLSEKMLARARAAGPDTGITY 93
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 30.2 bits (68), Expect = 1.5
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 380 RPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAK 439
R + L +L + +++ K L++G G G A + K + I +I+ K +
Sbjct: 65 RTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLV--RKFGVSIDCLNIAPVQNKRNE 122
Query: 440 KNAKK 444
+ +
Sbjct: 123 EYNNQ 127
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 29.9 bits (67), Expect = 1.7
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444
++LE GTGSGA+ ++ + + + K A+KN KK
Sbjct: 94 RVLEFGTGSGALLAVLSEVAGEVWTF---EAVEEFYKTAQKNLKK 135
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain
alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus
solfataricus}
Length = 344
Score = 30.3 bits (69), Expect = 1.7
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 405 GTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440
G I I A+ I I+ SK A +
Sbjct: 181 GLAVYTIQILKALMKN--ITIVGISRSKKHRDFALE 214
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 30.0 bits (67), Expect = 1.8
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKF 455
++LE GTGSG + + +A K + + + L A++N + N+
Sbjct: 99 RVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHL 154
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine,
drug metabolism; NMR {Pseudomonas syringae PV} SCOP:
c.66.1.36
Length = 203
Score = 29.7 bits (66), Expect = 2.0
Identities = 5/61 (8%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443
+ L ++L G ++ ++ ++S+ A++
Sbjct: 9 KDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLS---GQGYHVVGAELSEAAVERYFTERG 65
Query: 444 K 444
+
Sbjct: 66 E 66
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 29.9 bits (68), Expect = 2.0
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 406 TGSGAIAIAIAIYSKNK-IEIIATDISKFALKIAKK 440
G+G I + + +K ++ T S L++AK
Sbjct: 175 IGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN 210
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 30.0 bits (67), Expect = 2.0
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443
K+LE+G G G ++ +A + + DI+ +
Sbjct: 46 KILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQ 89
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 29.7 bits (67), Expect = 2.1
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444
++L++G G G A+ +A + + + IS+ + A A
Sbjct: 64 RVLDVGCGIGKPAVRLA--TARDVRVTGISISRPQVNQANARATA 106
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 29.9 bits (68), Expect = 2.6
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 406 TGSGAIAIAIAIYSKNK--IEIIATDISKFALKIAKK 440
G+G I + + +K ++ TDI + LK AK+
Sbjct: 186 CGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKE 222
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 29.3 bits (65), Expect = 2.8
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 401 LLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIP-IKFIKSN 459
+L++GTG G +A + + ++A D K ++ A K K +P + ++ +
Sbjct: 31 VLDVGTGDGKHPYKVARQNPS-RLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWAT 89
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic
acid cycle, oxidoreductase, protein phosphorylation,
NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP:
c.77.1.1
Length = 423
Score = 29.6 bits (67), Expect = 2.8
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 13/74 (17%)
Query: 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440
E + L+ + + KI+ I I S+ + + A+ A +
Sbjct: 161 EEVQKLISFLQNELNVNKIRF------PETSGIGIKPVSEEGTSRLV----RAAIDYAIE 210
Query: 441 NAKKKLT---KYNI 451
+ +K +T K NI
Sbjct: 211 HGRKSVTLVHKGNI 224
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 29.1 bits (66), Expect = 2.9
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 21/91 (23%)
Query: 400 KLLEMGTGSG---AI--AIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIK 454
K+LE+GTG G A+ I + S +EI + A K L+ YN IK
Sbjct: 73 KVLEIGTGIGYYTALIAEIVDKVVS---VEINEK--------MYNY-ASKLLSYYN-NIK 119
Query: 455 FIKSNWYNNLQNYKKLFN-IIV-ANPPYIPK 483
I + + K ++ ++V A P +
Sbjct: 120 LILGDGTLGYEEEKP-YDRVVVWATAPTLLC 149
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural
genomics, PSI, protein structure initiative; HET: MSE;
1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Length = 187
Score = 29.0 bits (66), Expect = 3.1
Identities = 25/130 (19%), Positives = 56/130 (43%), Gaps = 33/130 (25%)
Query: 407 GSGAIAI-AIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ 465
GSG +AI A+ S+ + I + + ALK+ K+N TK + K + L+
Sbjct: 54 GSGGLAIEAV---SRGMDKSICIEKNFAALKVIKENIAI--TKEPEKFEVRKMDANRALE 108
Query: 466 NYKKL---FNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYL 522
+ + F++++ +PPY K ++ +S ++++++ + L
Sbjct: 109 QFYEEKLQFDLVLLDPPY--------AKQEI--------------VSQLEKMLER--QLL 144
Query: 523 VKNGLLLIEH 532
+++ E
Sbjct: 145 TNEAVIVCET 154
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation,
transferase transferase inhibitor complex; HET: SAH;
1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A*
3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A*
1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A*
3s68_A* 2zlb_A 2zth_A* ...
Length = 221
Score = 29.2 bits (66), Expect = 3.3
Identities = 9/64 (14%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440
++D ++++ + LE+G G A+ +A + ++ +I+ I ++
Sbjct: 44 DAKGQIMDAVIREYSPSLV--LELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQ 101
Query: 441 NAKK 444
Sbjct: 102 MLNF 105
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 29.4 bits (65), Expect = 3.3
Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 5/86 (5%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459
K++++ G G IA+ + I + + A+ N L + + + +
Sbjct: 96 KVVDLTGGLGIDFIALM---SKASQGIYIERNDETAVAARHNIPLLLNEGK-DVNILTGD 151
Query: 460 WYNNLQNYKKL-FNIIVANPPYIPKG 484
+ L K + I +P
Sbjct: 152 FKEYLPLIKTFHPDYIYVDPARRSGA 177
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national
project protein structural and functional analyses; HET:
NAP CIT; 1.80A {Thermus thermophilus}
Length = 496
Score = 29.3 bits (66), Expect = 3.5
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 411 IAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT---KYNI 451
+A + + S E I +FA ++A+ +KK+ K NI
Sbjct: 155 VAQTLKLISWKGSEKIV----RFAFELARAEGRKKVHCATKSNI 194
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 29.1 bits (66), Expect = 3.8
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 406 TGSGAIAIAIAIYSKNK--IEIIATDISKFALKIAKK 440
G+G I + + +K +++ TD+S L AK+
Sbjct: 178 CGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE 214
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 28.6 bits (64), Expect = 4.0
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 401 LLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444
L ++G GSG+IAI + + +IS+ + NA
Sbjct: 29 LWDIGGGSGSIAIEWLRSTPQ-TTAVCFEISEERRERILSNAIN 71
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 28.8 bits (65), Expect = 4.1
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 414 AIAIYSKNKIEIIATDISKFALKIAKKNAKK 444
+A KN+ +I A D+ L +
Sbjct: 119 HLAALLKNQGKIFAFDLDAKRLASMATLLAR 149
>2esr_A Methyltransferase; structural genomics, hypothetical protein,
streptococcus PYO PSI, protein structure initiative;
HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Length = 177
Score = 28.3 bits (64), Expect = 4.2
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 407 GSGAIAI-AIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ 465
GSG +AI A+ S+ + + ++ A I + N TK +K +
Sbjct: 41 GSGGLAIEAV---SRGMSAAVLVEKNRKAQAIIQDNIIM--TKAENRFTLLKMEAERAID 95
Query: 466 NYKKLFNIIVANPPY 480
F+++ +PPY
Sbjct: 96 CLTGRFDLVFLDPPY 110
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural
genomics center for infectious ssgcid, glyoxylate
bypass, manganese; 1.65A {Burkholderia pseudomallei}
PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A
1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A*
1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ...
Length = 427
Score = 29.2 bits (66), Expect = 4.3
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 378 IPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKI 437
+ + ++ + ++ KKI+ + I I SK E + + A++
Sbjct: 177 AESEQAKKVIKFLQEEMGVKKIRFPQ------TSGIGIKPVSKEGTERLV----RKAIQY 226
Query: 438 AKKNAKKKLT---KYNI 451
A N +K +T K NI
Sbjct: 227 AIDNDRKSVTLVHKGNI 243
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 28.9 bits (65), Expect = 5.0
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 406 TGSGAIAIAIAIYSKNK--IEIIATDISKFALKIAKK 440
G G I +A K+ ++I ++ S+ +AK+
Sbjct: 220 LGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE 256
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure
INI northeast structural genomics consortium, unknown
function; 2.10A {Rhodopseudomonas palustris} SCOP:
c.66.1.52
Length = 387
Score = 28.9 bits (65), Expect = 5.0
Identities = 11/87 (12%), Positives = 33/87 (37%), Gaps = 16/87 (18%)
Query: 397 KKIKLLEMGTGSGAIAIAIAIYSKN------KIEIIATDISKFALKIAKKNAKKKLTKYN 450
+ ++L+E+G G G + + + + +I+ + + L
Sbjct: 80 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQT----LLAGIR 135
Query: 451 IPIKFIKSNWYNNLQNYKKLFNIIVAN 477
+W+++ ++ + +I+AN
Sbjct: 136 ------NIHWHDSFEDVPEGPAVILAN 156
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 28.8 bits (65), Expect = 5.4
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 405 GTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440
G G A+ + + +IA D+ + LK+A++
Sbjct: 197 GLGHIAVQLLKVMTPAT---VIALDVKEEKLKLAER 229
>2w51_A Protein arMet; MANF, CDNF, saposin, secreted, ER stress,
phosphoprotein, neurotrophic factor, sialic acid,
glycoprotein, growth factor, hormone; 2.80A {Homo
sapiens} PDB: 2kvd_A 2rqy_A 2kve_A
Length = 158
Score = 27.8 bits (61), Expect = 6.0
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 9 LEKFSKRLKELDFLLTQKEVHNNIKDYCKKV--REHSFLYPIVELYNNYKKINEDI 62
L +F + LK+ D + + N + +C++ +E+ Y I + KI ++
Sbjct: 13 LGRFYQDLKDRDVTFSPATIENELIKFCREARGKENRLCYYIGATDDAATKIINEV 68
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA
methylase, type I restriction enzyme ST protein; HET:
SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP:
c.66.1.45
Length = 445
Score = 28.8 bits (65), Expect = 6.2
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 468 KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDY 504
L ++I+ANPP+ + ++ F
Sbjct: 251 STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQL 287
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 28.4 bits (64), Expect = 6.5
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 12/42 (28%)
Query: 406 TGSGAI---AIAIAIYSKNKI----EIIATDISKFALKIAKK 440
G+G + + IA + +I S LK+A++
Sbjct: 202 QGAGPLGLFGVVIA-----RSLGAENVIVIAGSPNRLKLAEE 238
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 28.3 bits (64), Expect = 7.1
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 406 TGSGAIAIAIAIYSKNK--IEIIATDISKFALKIAKK 440
TG+G + + +K +I ++ S F ++AKK
Sbjct: 174 TGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK 210
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 27.9 bits (63), Expect = 7.1
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 21/92 (22%)
Query: 400 KLLEMGTGSG---AI--AIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNI-PI 453
++LE+GTGSG AI + + S +E I + + A+++L ++ +
Sbjct: 80 RVLEIGTGSGYQTAILAHLVQHVCS---VERIKG--------LQWQ-ARRRLKNLDLHNV 127
Query: 454 KFIKSNWYNNLQNYKKLFN-IIV-ANPPYIPK 483
+ + Q F+ IIV A PP IP
Sbjct: 128 STRHGDGWQGWQARAP-FDAIIVTAAPPEIPT 158
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding,
tRNA methyltransferase, S-adenosyl-L-methionine, iron,
4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi}
PDB: 2vs1_A*
Length = 425
Score = 28.3 bits (64), Expect = 7.4
Identities = 9/38 (23%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 406 TGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443
+G G I +A + D ++FA+++A++N +
Sbjct: 299 SGVGTFGIYLAKRGF---NVKGFDSNEFAIEMARRNVE 333
>2w50_A ArMet-like protein 1; MANF, CDNF, saposin, secreted, ER stress,
alternative splicing, hormone, growth factor,
neurotrophic factor; 1.60A {Homo sapiens}
Length = 102
Score = 26.6 bits (58), Expect = 8.1
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 9 LEKFSKRLKELDFLLTQKEVHNNIKDYCK--KVREHSFLYPIVELYNNYKKINEDI 62
L +F K L + + + + +C K +E+ Y + + KI ++
Sbjct: 13 LNRFYKSLIDRGVNFSLDTIEKELISFCLDTKGKENRLCYYLGATKDAATKILSEV 68
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 27.8 bits (61), Expect = 9.6
Identities = 5/45 (11%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444
+ + +G G + I + + + +I ++++K +
Sbjct: 125 RAVFIGGGPLPL-TGILLSHVYGMRVNVVEIEPDIAELSRKVIEG 168
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.382
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,786,501
Number of extensions: 568681
Number of successful extensions: 1697
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1574
Number of HSP's successfully gapped: 195
Length of query: 570
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 471
Effective length of database: 3,937,614
Effective search space: 1854616194
Effective search space used: 1854616194
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.4 bits)