RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2395
(570 letters)
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 211 bits (539), Expect = 5e-64
Identities = 108/295 (36%), Positives = 169/295 (57%), Gaps = 3/295 (1%)
Query: 8 KLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKE 67
+ +RL+E++ L Q +V N + +E S L +V+ + K+ ED+ E
Sbjct: 23 DYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLE 82
Query: 68 MLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALF 127
+ + + + + + + + + D + +++I+AG+GG E+ +
Sbjct: 83 LAVEADDEETFNEAVAELDALEEKLAQLEFRRM-FSGEYDSADCYLDIQAGSGGTEAQDW 141
Query: 128 VNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRVQRV 187
+ L RMY+R++E +K EII S E+ G K + +I G Y L+ E+GVHR+ R
Sbjct: 142 ASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRK 201
Query: 188 PKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRIT 247
++ GR HTS + V PE D+ DI INPADLRID YRASGAGGQH+N+T+SAVRIT
Sbjct: 202 SPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRIT 261
Query: 248 HIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQS--NTAKMRRLLIGS 300
HIPTGIV QCQNDRSQHKNK A+K + A++ + +++++ + + + IG
Sbjct: 262 HIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGW 316
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
{Escherichia coli [TaxId: 562]}
Length = 344
Score = 194 bits (493), Expect = 2e-57
Identities = 156/287 (54%), Positives = 213/287 (74%)
Query: 14 KRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEMLNDLE 73
+R +E+ LL + + + + RE++ L + + +++++ EDI TA+ ML+D E
Sbjct: 4 ERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMMLDDPE 63
Query: 74 MRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLR 133
MR A DE+ AK++ +E +++ L+LPKD +D+RN F+E+RAGTGGDE+ALF DL R
Sbjct: 64 MREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFR 123
Query: 134 MYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRVQRVPKTETQ 193
MY R++E W+ EI+S S E GGYKEIIA+I G VY +LKFESG HRVQRVP TE+Q
Sbjct: 124 MYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQ 183
Query: 194 GRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGI 253
GRIHTSACTVAV+PE + E ++NPADLRIDT+R+SGAGGQH+N TDSA+RITH+PTGI
Sbjct: 184 GRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGI 243
Query: 254 VVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
VV+CQ++RSQHKNKA AL +L ARI +++ ++Q A RR L+GS
Sbjct: 244 VVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGS 290
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 154 bits (391), Expect = 4e-43
Identities = 116/287 (40%), Positives = 175/287 (60%), Gaps = 13/287 (4%)
Query: 14 KRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEMLNDLE 73
++ KE++ LL + ++ + E++ + I + N K+ E I +E + E
Sbjct: 3 EKKKEIEKLLARPDLTP--EQMKNYGMEYAKIEEIENITNRIKETQEFIELLREE-GENE 59
Query: 74 MRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLR 133
+ EI +K + + ++L+ +EIR GTGG+E+ALF DL R
Sbjct: 60 L------EIEKYEKELDQLY---QELLFLLSPEASDKAIVEIRPGTGGEEAALFARDLFR 110
Query: 134 MYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRVQRVPKTETQ 193
MY R++ER W E+ +++GG +E++ + G N Y LK+ESGVHRVQRVP TE+
Sbjct: 111 MYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPVTESG 170
Query: 194 GRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGI 253
GRIHTS TVA + E +DI I P DL+I+T+RASG GGQ++NKT+SAVRITH+PTGI
Sbjct: 171 GRIHTSTATVA-VLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGI 229
Query: 254 VVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
VV CQN+RSQ++NK AL+IL AR+ + +++ ++ R+ IG+
Sbjct: 230 VVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGT 276
>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 129 bits (324), Expect = 2e-34
Identities = 97/258 (37%), Positives = 157/258 (60%), Gaps = 6/258 (2%)
Query: 311 ETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVL 370
+ ILL++VT ++ E +L ++ L+ L+ RR GEPIA++ G +EF+ L L
Sbjct: 22 DAEILLEHVTGRGRTFILAFGETQLTDEQCQQLDALLTRRRDGEPIAHLTGVREFWSLPL 81
Query: 371 NITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDI 430
++ LIPRP+TE LV+ + + E+ ++L++GTG+GAIA+A+A + EIIA D
Sbjct: 82 FVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPD-CEIIAVDR 140
Query: 431 SKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNK 490
A+ +A++NA+ K I ++S+W++ L + F +IV+NPPYI + D HL +
Sbjct: 141 MPDAVSLAQRNAQHLAIK---NIHILQSDWFSALAGQQ--FAMIVSNPPYIDEQDPHLQQ 195
Query: 491 GDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFS 550
GD+RFEP+ AL +G++ I I++ + LV G LL+EHG+ Q VR+ G+
Sbjct: 196 GDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYH 255
Query: 551 DIKSWRDLSGIERVTQGK 568
D+++ RD ERVT G+
Sbjct: 256 DVETCRDYGDNERVTLGR 273
>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK
{Thermotoga maritima [TaxId: 2336]}
Length = 271
Score = 113 bits (282), Expect = 1e-28
Identities = 66/271 (24%), Positives = 126/271 (46%), Gaps = 14/271 (5%)
Query: 295 RLLIGSVQKKSPLNIFETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGE 354
R G ++ + ++ E +++ V + +L + + + E + +L+++R G
Sbjct: 8 RDCSGKLEGVTETSVLEVLLIVSRVLGIRKEDLFLKD-LGVSPTEEKRILELVEKRASGY 66
Query: 355 PIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIA 414
P+ YI+G+KEF GL + V +PRPETE LV+L ++ + IK + I
Sbjct: 67 PLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGA-IG 125
Query: 415 IAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474
+++ + + ATD+S A++IA+KNA++ + K + + +I
Sbjct: 126 VSVAKFSDAIVFATDVSSKAVEIARKNAERH--GVSDRFFVRKGEFLEPFKEKFASIEMI 183
Query: 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534
++NPPY+ D+ FEP AL +GL +E +Y ++L+E G
Sbjct: 184 LSNPPYVK--SSAHLPKDVLFEPPEALFGGEDGLDFYREF---FGRYDTSGKIVLMEIGE 238
Query: 535 NQSNLVRKLLFKYGFSDIKSWRDLSGIERVT 565
+Q ++K++ F +D +G R
Sbjct: 239 DQVEELKKIVSDTVF-----LKDSAGKYRFL 264
>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing
protein METT10D {Human (Homo sapiens) [TaxId: 9606]}
Length = 250
Score = 103 bits (257), Expect = 2e-25
Identities = 35/221 (15%), Positives = 72/221 (32%), Gaps = 26/221 (11%)
Query: 363 KEFYGLVLNITSDVLIPRPETELLVDLIV-------KKTFEKKIKLLEMGTGSGAIAIAI 415
+E +GL ++I + LIP L V + +++GTG+ I +
Sbjct: 20 REDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLL 79
Query: 416 AIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL-----QNYKKL 470
+AT++ AKKN ++ + IK +K L + + +
Sbjct: 80 GATLNGWY-FLATEVDDMCFNYAKKNVEQ--NNLSDLIKVVKVPQKTLLMDALKEESEII 136
Query: 471 FNIIVANPPYIPKGDIHLN----------KGDLRFEPINALTDYSNGLSSIKEIVKNASK 520
++ + NPP+ + I + L +K I+ ++ +
Sbjct: 137 YDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQ 196
Query: 521 YLVKNGLLLIEHGYNQS-NLVRKLLFKYGFSDIKSWRDLSG 560
+ G S +++ L G + G
Sbjct: 197 LKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFCQG 237
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId:
10090]}
Length = 112
Score = 80.8 bits (199), Expect = 4e-19
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 25/99 (25%)
Query: 207 PEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHI----------------- 249
E + I L I R+SG GGQ++NK +S +
Sbjct: 7 GEHAKQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIAL 66
Query: 250 --------PTGIVVQCQNDRSQHKNKAFALKILLARIKD 280
+V+ ++ R Q +N A L+ + I +
Sbjct: 67 THKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAE 105
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 43.2 bits (101), Expect = 5e-05
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 16/102 (15%)
Query: 359 IIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKT---FEKKI-------------KLL 402
I+GK L + ++ RP E V L+ + T F K I +L
Sbjct: 44 IVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMILSMMDINPGDTVL 103
Query: 403 EMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444
E G+GSG +++ ++ ++ +I+ ++ K +AKKN K
Sbjct: 104 EAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH 145
>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT)
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 186
Score = 42.1 bits (98), Expect = 6e-05
Identities = 16/99 (16%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 378 IPRPETELLVDLIVKKTFEKK-IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALK 436
+P P + LI+ K +++G G+G + + +A + + A D + A+
Sbjct: 13 VPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRR---VYAIDRNPEAIS 69
Query: 437 IAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475
+ N ++ N + ++ + L + +V
Sbjct: 70 TTEMNLQRHGLGDN--VTLMEGDAPEALCKIPDIDIAVV 106
>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 194
Score = 41.2 bits (95), Expect = 1e-04
Identities = 41/216 (18%), Positives = 80/216 (37%), Gaps = 42/216 (19%)
Query: 345 KLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEM 404
K+++ + G+ + + F ++ T++LV+ +V K +L++
Sbjct: 12 KIVEDILRGKKLKFKTDSGVFSYGKVD---------KGTKILVENVVVD---KDDDILDL 59
Query: 405 GTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL 464
G G G I IA+ + DI++ A+K+AK+N K N I+ + S+ Y
Sbjct: 60 GCGYGVIGIAL---ADEVKSTTMADINRRAIKLAKENIKLN-NLDNYDIRVVHSDLYE-- 113
Query: 465 QNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVK 524
+ +N I+ NPP G + I++ + L
Sbjct: 114 NVKDRKYNKIITNPPIR------------------------AGKEVLHRIIEEGKELLKD 149
Query: 525 NGLLLIEHGYNQSNLVRKLLFKYGFSDIKSWRDLSG 560
NG + + Q K F ++++ G
Sbjct: 150 NGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIKGG 185
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 40.0 bits (92), Expect = 4e-04
Identities = 27/154 (17%), Positives = 60/154 (38%), Gaps = 7/154 (4%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459
++L++ TG G +A A A +++A D+++ LK+A+ + + ++
Sbjct: 18 EVLDVATGGGHVANAFA---PFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ 74
Query: 460 WYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNAS 519
+ + + I A+ P + L+ L D S + ++ N
Sbjct: 75 MPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYN-- 132
Query: 520 KYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIK 553
Y+ K + +S+ K+L + GF +
Sbjct: 133 -YVEKERDYSHHRAWKKSDW-LKMLEEAGFELEE 164
>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain
{Thermus aquaticus [TaxId: 271]}
Length = 223
Score = 38.1 bits (87), Expect = 0.001
Identities = 20/177 (11%), Positives = 41/177 (23%), Gaps = 8/177 (4%)
Query: 376 VLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFAL 435
V P + +V L + ++LE G A + +I AL
Sbjct: 1 VETPPEVVDFMVSLAEAP---RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL 57
Query: 436 KIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRF 495
+ + Y + K +
Sbjct: 58 DLPPWAEGILADFLLWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTW 116
Query: 496 EPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDI 552
+ L + ++V L++E R+ L + G + +
Sbjct: 117 KGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALL----REFLAREGKTSV 169
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 292
Score = 38.4 bits (88), Expect = 0.002
Identities = 26/154 (16%), Positives = 50/154 (32%), Gaps = 18/154 (11%)
Query: 380 RPETELLVDLIVKKTFEKKIK-LLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIA 438
R T ++ + +L++ G+G +I + + + + D S LK A
Sbjct: 38 RSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLV---EEGFSVTSVDASDKMLKYA 94
Query: 439 KKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPI 498
K + + I+ + L + P D +
Sbjct: 95 LKERWNRRKEPAFDKWVIEEANWLTLDK----------DVPAGDGFDAVI----CLGNSF 140
Query: 499 NALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532
L D S + +KN + + GLL+I+H
Sbjct: 141 AHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174
>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 197
Score = 37.8 bits (87), Expect = 0.002
Identities = 21/157 (13%), Positives = 49/157 (31%), Gaps = 23/157 (14%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459
+++ GTG+G +A + + DI A++ AK+N + F+ ++
Sbjct: 51 SVIDAGTGNGILACGSYLLGAESVTAF--DIDPDAIETAKRNCG--------GVNFMVAD 100
Query: 460 WYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNAS 519
++ + NPP+ + D F + I I +
Sbjct: 101 VS----EISGKYDTWIMNPPF----GSVVKHSDRAF-----IDKAFETSMWIYSIGNAKA 147
Query: 520 KYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKSWR 556
+ ++ + + + + Y R
Sbjct: 148 RDFLRREFSARGDVFREEKVYITVPRIYRHHSYDRAR 184
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 250
Score = 37.3 bits (86), Expect = 0.003
Identities = 17/84 (20%), Positives = 31/84 (36%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459
+LE+G GSG ++ I K + + + LK A N + N+
Sbjct: 88 DILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIA 147
Query: 460 WYNNLQNYKKLFNIIVANPPYIPK 483
+ + Q Y + I ++ K
Sbjct: 148 DFISDQMYDAVIADIPDPWNHVQK 171
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 264
Score = 36.9 bits (85), Expect = 0.004
Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 20/101 (19%)
Query: 359 IIGKKEFYGLVLNITSD--VLIPRPETELLVDLIVKKT---FEKKI-------------K 400
+IG + G V+ ++ L+ RP V + + + K +
Sbjct: 42 VIGLE--QGSVVKSSNGALFLVLRPLLVDYVMSMPRGPQVIYPKDAAQIVHEGDIFPGAR 99
Query: 401 LLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441
+LE G GSGA+ +++ ++I+ + + A++N
Sbjct: 100 VLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRN 140
>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA
methyltransferase Trm1 {Pyrococcus horikoshii [TaxId:
53953]}
Length = 375
Score = 34.2 bits (78), Expect = 0.035
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 380 RPETELLVDLIVK--KTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKI 437
P L D++V +L+ + +G I A+ + + E+ DIS+ A ++
Sbjct: 27 NPRMALNRDIVVVLLNIL-NPKIVLDALSATGIRGIRFALETPAE-EVWLNDISEDAYEL 84
Query: 438 AKKNAK 443
K+N
Sbjct: 85 MKRNVM 90
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 234
Score = 33.8 bits (76), Expect = 0.040
Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 13/161 (8%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459
++L++G G+G A+A + E I D +K +++A A++K + + +
Sbjct: 19 RVLDIGAGAGHTALAFS---PYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES 75
Query: 460 WYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTD-YSNGLSSIKEIVKNA 518
++ + A+ + + L+ + L D Y+ + E V +
Sbjct: 76 LPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHL 135
Query: 519 SKYLVKNGLLLIEHGYNQSNL-VRKLLFKYGFS--DIKSWR 556
++ + H S + + + DI+ W
Sbjct: 136 NRLRDPS------HVRESSLSEWQAMFSANQLAYQDIQKWN 170
>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase
3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 311
Score = 34.1 bits (77), Expect = 0.042
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 370 LNITSDVLIPRPETELLVDLIVKKTFEKKIK-LLEMGTGSGAIAIAIAIYSKNKIEIIAT 428
I ++L + TE D I + K K +L++G G+G +++ A K+ +
Sbjct: 7 YGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKV--LGV 64
Query: 429 DISKFALKIAKKNAKKKLTKYNIPIK 454
D S+ + KL IK
Sbjct: 65 DQSEILYQAMDIIRLNKLEDTITLIK 90
>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga
maritima [TaxId: 2336]}
Length = 266
Score = 33.2 bits (75), Expect = 0.076
Identities = 20/93 (21%), Positives = 39/93 (41%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459
++++ G GSGA+ +A + ++ A + + K+A+ N K + IK +
Sbjct: 106 RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS 165
Query: 460 WYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGD 492
+ ++ LF + YI K L G
Sbjct: 166 EGFDEKDVDALFLDVPDPWNYIDKCWEALKGGG 198
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
cereus [TaxId: 1396]}
Length = 281
Score = 32.9 bits (74), Expect = 0.080
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 373 TSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATD 429
T D+ LV+ + K K + +++ G G G + + + + D
Sbjct: 5 TRDLYYNDDYVSFLVNTVWK--ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGID 59
>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle
and C-terminal domains {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 324
Score = 32.9 bits (74), Expect = 0.099
Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 17/118 (14%)
Query: 413 IAIAIYSKNKIEIIATDISKFALKIAKKNAKK-KLTKYNIPIKFIKSNWYNNLQNYKKLF 471
AI E+I D S A++ AK+NAK + I LQ + F
Sbjct: 159 FAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKF 218
Query: 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLL 529
+I+V +PP + + L GL + + + G+L+
Sbjct: 219 DIVVLDPPAFVQHEKDLK----------------AGLRAYFNVNFAGLNLVKDGGILV 260
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase
{Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}
Length = 252
Score = 31.8 bits (71), Expect = 0.16
Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 388 DLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT 447
+++ ++ +L++G G G + E DI++ ++ A+ A+
Sbjct: 15 ACLIRLYTKRGDSVLDLGCGKGGDLLKYE--RAGIGEYYGVDIAEVSINDARVRARN--M 70
Query: 448 KYNIPIKFIKSNWYNNLQNYKKLFNIIVAN 477
K + F + Y + K F++I +
Sbjct: 71 KRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 100
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 209
Score = 30.4 bits (68), Expect = 0.39
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443
++L +G SG +A ++ I A + S + + +
Sbjct: 59 RVLYLGAASGTTVSHLA-DIVDEGIIYAVEYSAKPFEKLLELVR 101
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Salmonella typhimurium [TaxId: 90371]}
Length = 363
Score = 30.1 bits (67), Expect = 0.72
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 17/80 (21%)
Query: 375 DVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFA 434
D+L R T G+G A +Y + +IE IA + A
Sbjct: 133 DILCVRELTG---------GIYFGQPKGREGSGQYEKAFDTEVYHRFEIERIA----RIA 179
Query: 435 LKIAKKNAKKKLT---KYNI 451
+ A+K ++K+T K N+
Sbjct: 180 FESARKR-RRKVTSIDKANV 198
>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB
{Escherichia coli [TaxId: 562]}
Length = 182
Score = 29.2 bits (64), Expect = 0.88
Identities = 12/83 (14%), Positives = 22/83 (26%), Gaps = 2/83 (2%)
Query: 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFI 456
K + LL G G + AI + EI + A A++ + +
Sbjct: 19 KTMVLL--GAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVT 76
Query: 457 KSNWYNNLQNYKKLFNIIVANPP 479
+I+
Sbjct: 77 DLADQQAFAEALASADILTNGTK 99
>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ
{Enterobacter aerogenes [TaxId: 548]}
Length = 271
Score = 28.1 bits (61), Expect = 2.4
Identities = 11/83 (13%), Positives = 27/83 (32%)
Query: 425 IIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKG 484
+++ DI + A++ L N P+ I N + + L +
Sbjct: 46 VVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNM 105
Query: 485 DIHLNKGDLRFEPINALTDYSNG 507
++ R I++ ++
Sbjct: 106 RCAVDDFATRLLFIDSSRAGTSK 128
>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 28.0 bits (61), Expect = 3.0
Identities = 22/169 (13%), Positives = 53/169 (31%), Gaps = 13/169 (7%)
Query: 358 YIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAI 417
+I+ +K YG+ I LI + ++ K + K+ ++ G +
Sbjct: 24 FILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDP 83
Query: 418 YSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVAN 477
SK L I + + + +P+ + + +Q + + +
Sbjct: 84 VSKE-------------LTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATS 130
Query: 478 PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNG 526
+ + G E L D ++ + ++ Y + G
Sbjct: 131 GFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPG 179
>d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease,
catalytic domain {Helicobacter pylori [TaxId: 210]}
Length = 389
Score = 28.1 bits (63), Expect = 3.2
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 189 KTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQH 236
K + Q IHT + EA +ED A + T+ GAGG H
Sbjct: 109 KYDVQVAIHTDT-----LNEAGCVEDTMAAIAGRTMHTFHTEGAGGGH 151
>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 223
Score = 27.5 bits (60), Expect = 4.2
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 8/92 (8%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNK-----IEIIATDISKFALKIAKKNAKKKLTKY--NIP 452
++L++G+GSG + Y K K I+ + ++ +K N +
Sbjct: 83 RILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ 142
Query: 453 IKFIKSNWYNNLQNYKKLFNIIV-ANPPYIPK 483
+ ++ + I V A P P
Sbjct: 143 LLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPT 174
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 246
Score = 26.9 bits (58), Expect = 6.1
Identities = 4/37 (10%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 380 RPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIA 416
+ ++ +++ V+ L++ G+G + +
Sbjct: 21 KKWSDFIIEKCVENNLVFD-DYLDLACGTGNLTENLC 56
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 280
Score = 26.5 bits (57), Expect = 8.1
Identities = 28/157 (17%), Positives = 49/157 (31%), Gaps = 26/157 (16%)
Query: 397 KKIKLLEMGTGSGAIAIAIA-----IYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNI 451
+IK+L +G G+G I + I Y I + S + K+ K N+
Sbjct: 40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENV 99
Query: 452 PIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSI 511
+ K + +++ I+ + + I
Sbjct: 100 KFAWHKETSSEYQSRMLEKKE-------------------LQKWDFIHMI-QMLYYVKDI 139
Query: 512 KEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYG 548
+K L N +LI + S+ KL KYG
Sbjct: 140 PATLKFFHSLLGTNAKMLI-IVVSGSSGWDKLWKKYG 175
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 212
Score = 26.2 bits (57), Expect = 8.4
Identities = 15/171 (8%), Positives = 49/171 (28%), Gaps = 4/171 (2%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQK----EVHNNIKDYCKKVREHSFLYPIVELYNNYK 56
++ S+ S + + +TQ I + + + + + + +N
Sbjct: 36 FEYFANSQFHDSSDHVSFISPEVTQFIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSN 95
Query: 57 KINEDIITAKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIR 116
+ + + + F D + + E + L + + + +
Sbjct: 96 QAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAP 155
Query: 117 AGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARII 167
A + ++V + R + + + + I + +I
Sbjct: 156 AQQNSYDCGMYVICNTEALCQNFFRQQTESLLQLLTPAYITKKRGEWKDLI 206
>d1dmga_ c.22.1.1 (A:) Ribosomal protein L4 {Thermotoga maritima
[TaxId: 2336]}
Length = 225
Score = 26.3 bits (57), Expect = 8.8
Identities = 16/73 (21%), Positives = 27/73 (36%)
Query: 106 NDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIAR 165
+ I ++ L + M ++ S RN ++I E R
Sbjct: 136 KSLKEILQNLQLSDKKTLIVLPWKEEGYMNVKLSGRNLPDVKVIIADNPNNSKNGEKAVR 195
Query: 166 IIGLNVYSKLKFE 178
I GLNV+ LK++
Sbjct: 196 IDGLNVFDMLKYD 208
>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 278
Score = 26.4 bits (57), Expect = 9.2
Identities = 17/105 (16%), Positives = 40/105 (38%), Gaps = 9/105 (8%)
Query: 384 ELLVDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNA 442
L+++ I+ K +LE+G G+G + + + + +++A ++ +
Sbjct: 7 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLL---EKAKKVVACELDPRLVAE----- 58
Query: 443 KKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIH 487
K + ++ + L+ F+ VAN PY
Sbjct: 59 LHKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVANLPYQISSPFV 103
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.382
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,150,559
Number of extensions: 110279
Number of successful extensions: 437
Number of sequences better than 10.0: 1
Number of HSP's gapped: 420
Number of HSP's successfully gapped: 58
Length of query: 570
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 480
Effective length of database: 1,171,896
Effective search space: 562510080
Effective search space used: 562510080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.3 bits)