BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2398
(433 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 10/177 (5%)
Query: 26 LSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85
L ++Y + + E+ GG W + SLHL SP + +P +PMP + YP
Sbjct: 22 LRRSGLSYVILDAEASPGGAWQ------HAWHSLHLFSPAGWSSIPGWPMPASQGPYPAR 75
Query: 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV 145
+ +L YL Y +K+ + + V + + + V +G++ + G
Sbjct: 76 AEVLAYLAQYEQKYAL--PVLRPIRVQRVSHFGERLRVVARDGRQWLARAVISATGTWGE 133
Query: 146 ARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVY 200
A P Y G F+G LHS Y +P RV ++G GNSG I + S +E +
Sbjct: 134 AYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVAETTW 190
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 95/211 (45%), Gaps = 28/211 (13%)
Query: 35 LYEMESDLGGVWNSQASCG----------RVYPSLHLISPKFNTQVPDYPMPDNY--PV- 81
+E ++D GG WN G +Y L PK + DY +++ P+
Sbjct: 36 CFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIA 95
Query: 82 -YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGK-----KKKY 133
YP ++ DY++ +K V + FNT V ++E ED + V + + +++
Sbjct: 96 SYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEF 155
Query: 134 DFIAVCNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVD 191
D++ C G P + G+ F G ILH+ D++ + ++K VL+VG+ +S DI
Sbjct: 156 DYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSSSAEDIGSQ 215
Query: 192 ASHHSEK----VYHSTRRGYHYYPKFIDGKP 218
+ K Y + GY +P+ D +P
Sbjct: 216 CYKYGAKKLISCYRTAPMGYK-WPENWDERP 245
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 297 VHFVDDTHIEVDTIIYATGYNRHFPFID 324
+F D + +VD II TGY HFPF++
Sbjct: 255 AYFADGSSEKVDAIILCTGYIHHFPFLN 282
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 82/212 (38%), Gaps = 30/212 (14%)
Query: 37 EMESDLGGVW--NSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRS 94
E D+GG W N C S +P++ +N+ P ML Y+
Sbjct: 39 EAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPE---MLRYVNR 95
Query: 95 YAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGKKKKYDFIAVCNGAQRVARYPNYS 152
A DV H FNT V E+ +WEV L N + F+ G +R P+
Sbjct: 96 AADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIK 155
Query: 153 GY--FSGEILHSMDYKSPDQ-------IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHST 203
G F GE HS + + + KRV V+G G +G I A+ ++++Y
Sbjct: 156 GIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQ 215
Query: 204 RRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEE 235
R TP W LGN SKE+
Sbjct: 216 R--------------TPNWCTPLGNSPMSKEK 233
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 28/211 (13%)
Query: 35 LYEMESDLGGVWNSQASCG----------RVYPSLHLISPKFNTQVPDYPMPDNY--PV- 81
+E ++D GG WN G +Y L PK + DY +++ P+
Sbjct: 36 CFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIA 95
Query: 82 -YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGK-----KKKY 133
YP ++ DY++ +K V + FNT V ++E ED + V + + +++
Sbjct: 96 SYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEF 155
Query: 134 DFIAVCNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVD 191
D++ C G P + G+ F G ILH+ D++ + ++K VL+VG+ S DI
Sbjct: 156 DYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQ 215
Query: 192 ASHHSEK----VYHSTRRGYHYYPKFIDGKP 218
+ K Y + GY +P+ D +P
Sbjct: 216 CYKYGAKKLISCYRTAPMGYK-WPENWDERP 245
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 297 VHFVDDTHIEVDTIIYATGYNRHFPFID 324
+F D + +VD II TGY HFPF++
Sbjct: 255 AYFADGSSEKVDAIILCTGYIHHFPFLN 282
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 28/211 (13%)
Query: 35 LYEMESDLGGVWNSQASCG----------RVYPSLHLISPKFNTQVPDYPMPDNY--PV- 81
+E ++D GG WN G +Y L PK + DY +++ P+
Sbjct: 41 CFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSSGPKECLEFADYTFDEHFGKPIA 100
Query: 82 -YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGK-----KKKY 133
YP ++ DY++ +K V + FNT V ++E ED + V + + +
Sbjct: 101 SYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSAAF 160
Query: 134 DFIAVCNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVD 191
D++ C G P + G+ F G ILH+ D++ + ++K VL+VG+ S DI
Sbjct: 161 DYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQ 220
Query: 192 ASHHSEK----VYHSTRRGYHYYPKFIDGKP 218
+ K Y + GY +P+ D +P
Sbjct: 221 CYKYGAKKLISCYRTAPMGYK-WPENWDERP 250
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 297 VHFVDDTHIEVDTIIYATGYNRHFPFID 324
+F D + +VD II TGY HFPF++
Sbjct: 260 AYFADGSSEKVDAIILCTGYIHHFPFLN 287
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 93/211 (44%), Gaps = 28/211 (13%)
Query: 35 LYEMESDLGGVWNSQASCG----------RVYPSLHLISPKFNTQVPDYPMPDNY--PV- 81
+E ++D GG WN G Y L PK + DY +++ P+
Sbjct: 36 CFEKQADWGGQWNYTWRTGLDENGEPVHSSXYRYLWSNGPKECLEFADYTFDEHFGKPIA 95
Query: 82 -YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGK-----KKKY 133
YP ++ DY++ +K V + FNT V ++E ED + V + + +++
Sbjct: 96 SYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEF 155
Query: 134 DFIAVCNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVD 191
D++ C G P + G+ F G ILH+ D++ + ++K VL+VG+ S DI
Sbjct: 156 DYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQ 215
Query: 192 ASHHSEK----VYHSTRRGYHYYPKFIDGKP 218
+ K Y + GY +P+ D +P
Sbjct: 216 CYKYGAKKLISCYRTAPXGYK-WPENWDERP 245
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 297 VHFVDDTHIEVDTIIYATGYNRHFPFID 324
+F D + +VD II TGY HFPF++
Sbjct: 255 AYFADGSSEKVDAIILCTGYIHHFPFLN 282
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 28/211 (13%)
Query: 35 LYEMESDLGGVWNSQASCG----------RVYPSLHLISPKFNTQVPDYPMPDNY--PV- 81
+E ++D GG WN G +Y L PK + DY +++ P+
Sbjct: 41 CFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSKGPKECLEFADYTFDEHFGKPIA 100
Query: 82 -YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGK-----KKKY 133
YP ++ DY++ +K V + FNT V ++E ED + V + + +
Sbjct: 101 SYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSAAF 160
Query: 134 DFIAVCNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVD 191
D++ C G P + G+ F G ILH+ D++ + ++K VL+VG+ S DI
Sbjct: 161 DYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQ 220
Query: 192 ASHHSEK----VYHSTRRGYHYYPKFIDGKP 218
+ K Y + GY +P+ D +P
Sbjct: 221 CYKYGAKKLISCYRTAPMGYK-WPENWDERP 250
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 297 VHFVDDTHIEVDTIIYATGYNRHFPFID 324
+F D + +VD II TGY HFPF++
Sbjct: 260 AYFADGSSEKVDAIILCTGYIHHFPFLN 287
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 28/211 (13%)
Query: 35 LYEMESDLGGVWNSQASCG----------RVYPSLHLISPKFNTQVPDYPMPDNY--PV- 81
+E ++D GG WN G +Y L PK + DY +++ P+
Sbjct: 41 CFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSDGPKECLEFADYTFDEHFGKPIA 100
Query: 82 -YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGK-----KKKY 133
YP ++ DY++ +K V + FNT V ++E ED + V + + +
Sbjct: 101 SYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSAAF 160
Query: 134 DFIAVCNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVD 191
D++ C G P + G+ F G ILH+ D++ + ++K VL+VG+ S DI
Sbjct: 161 DYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQ 220
Query: 192 ASHHSEK----VYHSTRRGYHYYPKFIDGKP 218
+ K Y + GY +P+ D +P
Sbjct: 221 CYKYGAKKLISCYRTAPMGYK-WPENWDERP 250
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 297 VHFVDDTHIEVDTIIYATGYNRHFPFID 324
+F D + +VD II TGY HFPF++
Sbjct: 260 AYFADGSSEKVDAIILCTGYIHHFPFLN 287
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 28/211 (13%)
Query: 35 LYEMESDLGGVWNSQASCG----------RVYPSLHLISPKFNTQVPDYPMPDNY--PV- 81
+E ++D GG WN G +Y L PK + DY +++ P+
Sbjct: 41 CFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIA 100
Query: 82 -YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGK-----KKKY 133
YP ++ DY++ +K V + FNT V ++E ED + V + + +
Sbjct: 101 SYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSAAF 160
Query: 134 DFIAVCNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVD 191
D++ C G P + G+ F G ILH+ D++ + ++K VL+VG+ S DI
Sbjct: 161 DYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQ 220
Query: 192 ASHHSEK----VYHSTRRGYHYYPKFIDGKP 218
+ K Y + GY +P+ D +P
Sbjct: 221 CYKYGAKKLISCYRTAPMGYK-WPENWDERP 250
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 297 VHFVDDTHIEVDTIIYATGYNRHFPFID 324
+F D + +VD II TGY HFPF++
Sbjct: 260 AYFADGSSEKVDAIILCTGYIHHFPFLN 287
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 23/190 (12%)
Query: 81 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGKKKKYDFIAV 138
Y +L+YL +FD+ H F TEV + +D +WEV +G+ + ++
Sbjct: 82 TYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVN 141
Query: 139 CNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHS 196
G +PN G F GE +H+ + + +RV V+G G++G + +
Sbjct: 142 AVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEV 201
Query: 197 EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIK----QVFKLAGFDGV 252
E + R TPQ+ + +GN+ + E+ +A IK ++++ A V
Sbjct: 202 EHLTVFVR--------------TPQYSVPVGNRPVNPEQ-IAEIKADYDRIWERAKNSAV 246
Query: 253 DYGLKKPDHP 262
+G ++ P
Sbjct: 247 AFGFEESTLP 256
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 23/190 (12%)
Query: 81 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGKKKKYDFIAV 138
Y +L+YL +FD+ H F TEV + +D +WEV +G+ + ++
Sbjct: 115 TYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVN 174
Query: 139 CNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHS 196
G +PN G F GE +H+ + + +RV V+G G++G + +
Sbjct: 175 AVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEV 234
Query: 197 EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIK----QVFKLAGFDGV 252
E + R TPQ+ + +GN+ + E+ +A IK ++++ A V
Sbjct: 235 EHLTVFVR--------------TPQYSVPVGNRPVNPEQ-IAEIKADYDRIWERAKNSAV 279
Query: 253 DYGLKKPDHP 262
+G ++ P
Sbjct: 280 AFGFEESTLP 289
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 80/196 (40%), Gaps = 44/196 (22%)
Query: 35 LYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQ-------VPDYPMP------DNYPV 81
L+E GGVWN ++ P + +P T+ +P YP P N P+
Sbjct: 36 LFERRGSPGGVWNYTSTLSNKLP-VPSTNPILTTEPIVGPAALPVYPSPLYRDLQTNTPI 94
Query: 82 ----------------YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL 125
+P+ + +Y R YA+ + T+V+++E+ + W V
Sbjct: 95 ELXGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIK--LATDVLDIEKKDGSWVVTY 152
Query: 126 SNGK------KKKYDFIAVCNGAQRVARYPN------YSGYFSGEILHSMDYKSPDQIRN 173
K K +D +++CNG V PN Y+ G +LHS ++ P+
Sbjct: 153 KGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVG 212
Query: 174 KRVLVVGAGNSGCDIA 189
+ VLVVG +S D+
Sbjct: 213 ESVLVVGGASSANDLV 228
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 80/196 (40%), Gaps = 44/196 (22%)
Query: 35 LYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQ-------VPDYPMP------DNYPV 81
L+E GGVWN ++ P + +P T+ +P YP P N P+
Sbjct: 38 LFERRGSPGGVWNYTSTLSNKLP-VPSTNPILTTEPIVGPAALPVYPSPLYRDLQTNTPI 96
Query: 82 ----------------YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL 125
+P+ + +Y R YA+ + T+V+++E+ + W V
Sbjct: 97 ELXGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIK--LATDVLDIEKKDGSWVVTY 154
Query: 126 SNGK------KKKYDFIAVCNGAQRVARYPN------YSGYFSGEILHSMDYKSPDQIRN 173
K K +D +++CNG V PN Y+ G +LHS ++ P+
Sbjct: 155 KGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVG 214
Query: 174 KRVLVVGAGNSGCDIA 189
+ VLVVG +S D+
Sbjct: 215 ESVLVVGGASSANDLV 230
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 99/219 (45%), Gaps = 12/219 (5%)
Query: 26 LSEGNINYDLYEMESDLGGVW--NSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83
L E + + E D+GGVW N S+ + ++ + Y P
Sbjct: 35 LRELGRSVHVIETAGDVGGVWYWNRYPGARCAIESIEYCYSFSEEVLQEWNWTERYASQP 94
Query: 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVIN--LEQYEDIWEVELSNGKKKKYDFIAVCNG 141
+L Y+ A KFD+ + F+T V ++ + W V+ ++G + + ++ + +G
Sbjct: 95 E---ILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASG 151
Query: 142 AQRVARYPNYSGY--FSGEILHSMDYK-SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEK 198
V + PN+ G F+G + H+ ++ P +RV V+G G+SG ++ + + +
Sbjct: 152 QLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAE 211
Query: 199 VYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS-KEET 236
++ +R H+ + P+++ L +++ +EE+
Sbjct: 212 LF-VFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREES 249
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 81/161 (50%), Gaps = 7/161 (4%)
Query: 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN--LEQYEDIWEVELSNGKKKKYDFIAVC 139
Y + +L Y+ A KFD+ + F+T V ++ + W V+ ++G + + ++ +
Sbjct: 90 YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMA 149
Query: 140 NGAQRVARYPNYSGY--FSGEILHSMDYK-SPDQIRNKRVLVVGAGNSGCDIAVDASHHS 196
+G V + PN+ G F+G + H+ ++ P +RV V+G G+SG ++ + +
Sbjct: 150 SGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQA 209
Query: 197 EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS-KEET 236
+++ +R H+ + P+++ L +++ +EE+
Sbjct: 210 AELF-VFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREES 249
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 81/161 (50%), Gaps = 7/161 (4%)
Query: 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN--LEQYEDIWEVELSNGKKKKYDFIAVC 139
Y + +L Y+ A KFD+ + F+T V ++ + W V+ ++G + + ++ +
Sbjct: 90 YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMA 149
Query: 140 NGAQRVARYPNYSGY--FSGEILHSMDYK-SPDQIRNKRVLVVGAGNSGCDIAVDASHHS 196
+G V + PN+ G F+G + H+ ++ P +RV V+G G+SG ++ + +
Sbjct: 150 SGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQA 209
Query: 197 EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS-KEET 236
+++ +R H+ + P+++ L +++ +EE+
Sbjct: 210 AELF-VFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREES 249
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 81/161 (50%), Gaps = 7/161 (4%)
Query: 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN--LEQYEDIWEVELSNGKKKKYDFIAVC 139
Y + +L Y+ A KFD+ + F+T V ++ + W V+ ++G + + ++ +
Sbjct: 90 YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMA 149
Query: 140 NGAQRVARYPNYSGY--FSGEILHSMDYK-SPDQIRNKRVLVVGAGNSGCDIAVDASHHS 196
+G V + PN+ G F+G + H+ ++ P +RV V+G G+SG ++ + +
Sbjct: 150 SGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQA 209
Query: 197 EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS-KEET 236
+++ +R H+ + P+++ L +++ +EE+
Sbjct: 210 AELF-VFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREES 249
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)
Query: 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN--LEQYEDIWEVELSNGKKKKYDFIAVC 139
Y +L YL A +FD+ F+T V + L++ W V G + F+ V
Sbjct: 95 YATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVA 154
Query: 140 NGAQRVARYPNYSGY--FSGEILHSMDYKSPD-QIRNKRVLVVGAGNSGCDIAVDASHHS 196
G A P + G F+G+I+H+ + KRV V+G G+SG + +
Sbjct: 155 AGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQA 214
Query: 197 EKVYHSTRRGYHYYP 211
E+++ R + P
Sbjct: 215 EQLFVFQRSANYSIP 229
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)
Query: 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN--LEQYEDIWEVELSNGKKKKYDFIAVC 139
Y +L YL A +FD+ F+T V + L++ W V G + F+ V
Sbjct: 95 YATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVA 154
Query: 140 NGAQRVARYPNYSGY--FSGEILHSMDYKSPD-QIRNKRVLVVGAGNSGCDIAVDASHHS 196
G A P + G F+G+I+H+ + KRV V+G G+SG + +
Sbjct: 155 AGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQA 214
Query: 197 EKVYHSTRRGYHYYP 211
E+++ R + P
Sbjct: 215 EQLFVFQRSANYSIP 229
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)
Query: 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN--LEQYEDIWEVELSNGKKKKYDFIAVC 139
Y +L YL A +FD+ F+T V + L++ W V G + F+ V
Sbjct: 95 YATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVA 154
Query: 140 NGAQRVARYPNYSGY--FSGEILHSMDYKSPD-QIRNKRVLVVGAGNSGCDIAVDASHHS 196
G A P + G F+G+I+H+ + KRV V+G G+SG + +
Sbjct: 155 AGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQA 214
Query: 197 EKVYHSTRRGYHYYP 211
E+++ R + P
Sbjct: 215 EQLFVFQRSANYSIP 229
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 5/143 (3%)
Query: 61 LISPKFNTQVPDYPMPDNYPVYPNHS--MMLDYLRSYAKKFDV-YNHSIFNTEVINLEQY 117
L+ +F QV D +NY P + L+++ +DV S ++++
Sbjct: 240 LMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATE 299
Query: 118 EDIWEVELSNGKKKKYDFIAVCNGAQ-RVARYPNYSGYFSGEILHSMDYKSPDQIRNKRV 176
+ ++E ++G K I + GA+ R P Y + + + P + KRV
Sbjct: 300 GGLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGP-LFKGKRV 358
Query: 177 LVVGAGNSGCDIAVDASHHSEKV 199
V+G GNSG + A+D + E V
Sbjct: 359 AVIGGGNSGVEAAIDLAGIVEHV 381
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 5/143 (3%)
Query: 61 LISPKFNTQVPDYPMPDNYPVYPNHS--MMLDYLRSYAKKFDV-YNHSIFNTEVINLEQY 117
L+ +F Q+ D +NY P + L+ + ++DV S +++I
Sbjct: 29 LMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVE 88
Query: 118 EDIWEVELSNGKKKKYDFIAVCNGAQ-RVARYPNYSGYFSGEILHSMDYKSPDQIRNKRV 176
+ ++E ++G K I V GA+ R P Y + + + P + KRV
Sbjct: 89 GGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDGP-LFKGKRV 147
Query: 177 LVVGAGNSGCDIAVDASHHSEKV 199
V+G GNSG + A+D + E V
Sbjct: 148 AVIGGGNSGVEAAIDLAGIVEHV 170
>pdb|1VDC|A Chain A, Structure Of Nadph Dependent Thioredoxin Reductase
Length = 333
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 77 DNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFI 136
+N+P +P + ++ + K+ + + +IF V ++ +++ ++ K D +
Sbjct: 58 ENFPGFPEGILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKL-FTDSKAILADAV 116
Query: 137 AVCNGAQRVARYPNYSGYFSGEILHS-----------MDYKSPDQIRNKRVLVVGAGNSG 185
+ GA VA+ ++ G SGE+L D +P RNK + V+G G+S
Sbjct: 117 ILAIGA--VAKRLSFVG--SGEVLGGFWNRGISACAVCDGAAP-IFRNKPLAVIGGGDSA 171
Query: 186 CDIAVDASHHSEKVYHSTRR 205
+ A + + KVY RR
Sbjct: 172 MEEANFLTKYGSKVYIIHRR 191
>pdb|3D8X|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nadph
Dependent Thioredoxin Reductase 1
pdb|3D8X|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nadph
Dependent Thioredoxin Reductase 1
Length = 326
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 29/146 (19%)
Query: 77 DNYPVYPNH---SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN------ 127
+N+P +P+ S ++D +R + KF TE+I E + +V+LS+
Sbjct: 60 ENFPGFPDGLTGSELMDRMREQSTKF--------GTEIIT----ETVSKVDLSSKPFKLW 107
Query: 128 ------GKKKKYDFIAVCNGAQ-RVARYPNYSGYFSGEILHSMDYKSPDQI-RNKRVLVV 179
+ D I + GA + P Y+ I I RNK + V+
Sbjct: 108 TEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVI 167
Query: 180 GAGNSGCDIAVDASHHSEKVYHSTRR 205
G G+S C+ A + + KV+ R+
Sbjct: 168 GGGDSACEEAQFLTKYGSKVFMLVRK 193
>pdb|3ITJ|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
Length = 338
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 29/146 (19%)
Query: 77 DNYPVYPNH---SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN------ 127
+N+P +P+ S ++D +R + KF TE+I E + +V+LS+
Sbjct: 72 ENFPGFPDGLTGSELMDRMREQSTKF--------GTEIIT----ETVSKVDLSSKPFKLW 119
Query: 128 ------GKKKKYDFIAVCNGAQ-RVARYPNYSGYFSGEILHSMDYKSPDQI-RNKRVLVV 179
+ D I + GA + P Y+ I I RNK + V+
Sbjct: 120 TEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVI 179
Query: 180 GAGNSGCDIAVDASHHSEKVYHSTRR 205
G G+S C+ A + + KV+ R+
Sbjct: 180 GGGDSACEEAQFLTKYGSKVFMLVRK 205
>pdb|3GFS|A Chain A, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|B Chain B, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|C Chain C, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|D Chain D, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|E Chain E, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|F Chain F, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|G Chain G, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|H Chain H, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|I Chain I, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|J Chain J, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|K Chain K, Structure Of Yhda, K109dD137K VARIANT
pdb|3GFS|L Chain L, Structure Of Yhda, K109dD137K VARIANT
Length = 174
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 14/96 (14%)
Query: 102 YNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY-------PNYSGY 154
Y ++++T++I+L ++ + + NG+ ++ + + V QRV + P Y
Sbjct: 22 YIAALYHTDLIDLSEFV----LPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPEYHSG 77
Query: 155 FSGEILHSMDYKSPDQIRNKRV---LVVGAGNSGCD 187
SG + +++D+ S +Q + K V V G G+ G +
Sbjct: 78 MSGALKNALDFLSSEQFKYKPVALLAVAGGGDGGIN 113
>pdb|3GFR|A Chain A, Structure Of Yhda, D137l Variant
pdb|3GFR|B Chain B, Structure Of Yhda, D137l Variant
pdb|3GFR|C Chain C, Structure Of Yhda, D137l Variant
pdb|3GFR|D Chain D, Structure Of Yhda, D137l Variant
Length = 174
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 14/96 (14%)
Query: 102 YNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY-------PNYSGY 154
Y ++++T++I+L ++ + + NG+ ++ + + V QRV + P Y
Sbjct: 22 YIAALYHTDLIDLSEFV----LPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPEYHSG 77
Query: 155 FSGEILHSMDYKSPDQIRNKRV---LVVGAGNSGCD 187
SG + +++D+ S +Q + K V V G G G +
Sbjct: 78 MSGALKNALDFLSSEQFKYKPVALLAVAGGGKGGIN 113
>pdb|1TDF|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 27/150 (18%)
Query: 69 QVPDYPMPDNYPVYPN---HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL 125
Q+ +N+P PN ++++ + +A KF+ TE+I ++ I +V+L
Sbjct: 42 QLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFE--------TEII----FDHINKVDL 89
Query: 126 SN------GKKKKY--DFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNKR 175
N G +Y D + + GA ARY F G + + RN++
Sbjct: 90 QNRPFRLNGDNGEYTCDALIIATGAS--ARYLGLPSEEAFKGRGVSACATSDGFFYRNQK 147
Query: 176 VLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205
V V+G GN+ + A+ S+ + +V+ RR
Sbjct: 148 VAVIGGGNTAVEEALYLSNIASEVHLIHRR 177
>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
pdb|2ZBW|B Chain B, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
Length = 335
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 113 NLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY-----FSGEILHSMDYKS 167
LE+ D+++V S G Y AV A A P G F G ++ KS
Sbjct: 90 TLEREGDLFKVTTSQGNA--YTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVY-YAVKS 146
Query: 168 PDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205
+ + KRVL+VG G+S D A++ + ++ RR
Sbjct: 147 KAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRR 184
>pdb|2HXR|A Chain A, Structure Of The Ligand Binding Domain Of E. Coli Cynr, A
Transcriptional Regulator Controlling Cyanate Metabolism
pdb|2HXR|B Chain B, Structure Of The Ligand Binding Domain Of E. Coli Cynr, A
Transcriptional Regulator Controlling Cyanate Metabolism
pdb|3HFU|A Chain A, Crystal Structure Of The Ligand Binding Domain Of E. Coli
Cynr With Its Specific Effector Azide
pdb|3HFU|B Chain B, Crystal Structure Of The Ligand Binding Domain Of E. Coli
Cynr With Its Specific Effector Azide
pdb|3HFU|C Chain C, Crystal Structure Of The Ligand Binding Domain Of E. Coli
Cynr With Its Specific Effector Azide
pdb|3HFU|D Chain D, Crystal Structure Of The Ligand Binding Domain Of E. Coli
Cynr With Its Specific Effector Azide
Length = 238
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 116 QYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEI 159
QY EL GK+ +D + G+ R+A P ++ YF G +
Sbjct: 5 QYASRALQELGAGKRAIHDVADLTRGSLRIAVTPTFTSYFIGPL 48
>pdb|1TRB|A Chain A, Convergent Evolution Of Similar Function In Two
Structurally Divergent Enzymes
Length = 320
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 27/150 (18%)
Query: 69 QVPDYPMPDNYPVYPN---HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL 125
Q+ +N+P PN ++++ + +A KF+ TE+I ++ I +V+L
Sbjct: 42 QLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFE--------TEII----FDHINKVDL 89
Query: 126 SN------GKKKKY--DFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNKR 175
N G +Y D + + GA ARY F G + + RN++
Sbjct: 90 QNRPFRLNGDNGEYTCDALIIATGAS--ARYLGLPSEEAFKGRGVSACATSDGFFYRNQK 147
Query: 176 VLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205
V V+G GN+ + A+ S+ + +V+ RR
Sbjct: 148 VAVIGGGNTAVEEALYLSNIASEVHLIHRR 177
>pdb|1R7O|A Chain A, Crystal Structure Of Apo-mannanase 26a From Psudomonas
Cellulosa
Length = 395
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 68 TQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSI 106
TQVP Y +P N P N+ + D+ YA +F +N I
Sbjct: 345 TQVPHYWVPANRPENINNGTLEDFQAFYADEFTAFNRDI 383
>pdb|1GW1|A Chain A, Substrate Distortion By Beta-Mannanase From Pseudomonas
Cellulosa
Length = 376
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 68 TQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSI 106
TQVP Y +P N P N+ + D+ YA +F +N I
Sbjct: 328 TQVPHYWVPANRPENINNGTLEDFQAFYADEFTAFNRDI 366
>pdb|2GSW|A Chain A, Crystal Structure Of The Putative Nadph-Dependent
Azobenzene Fmn- Reductase Yhda From Bacillus Subtilis,
Northeast Structural Genomics Target Sr135
pdb|2GSW|B Chain B, Crystal Structure Of The Putative Nadph-Dependent
Azobenzene Fmn- Reductase Yhda From Bacillus Subtilis,
Northeast Structural Genomics Target Sr135
pdb|2GSW|C Chain C, Crystal Structure Of The Putative Nadph-Dependent
Azobenzene Fmn- Reductase Yhda From Bacillus Subtilis,
Northeast Structural Genomics Target Sr135
pdb|2GSW|D Chain D, Crystal Structure Of The Putative Nadph-Dependent
Azobenzene Fmn- Reductase Yhda From Bacillus Subtilis,
Northeast Structural Genomics Target Sr135
Length = 182
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 14/96 (14%)
Query: 102 YNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY-------PNYSGY 154
Y ++++T++I+L ++ + + NG+ ++ + + V QRV + P Y
Sbjct: 22 YIAALYHTDLIDLSEFV----LPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPEYHSG 77
Query: 155 FSGEILHSMDYKSPDQIRNKRV---LVVGAGNSGCD 187
SG + +++D+ S +Q + K V V G G G +
Sbjct: 78 XSGALKNALDFLSSEQFKYKPVALLAVAGGGKGGIN 113
>pdb|1J9Y|A Chain A, Crystal Structure Of Mannanase 26a From Pseudomonas
Cellulosa
Length = 385
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 68 TQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSI 106
TQVP Y +P N P N+ + D+ YA +F +N I
Sbjct: 335 TQVPHYWVPANRPENINNGTLEDFQAFYADEFTAFNRDI 373
>pdb|1ODZ|A Chain A, Expansion Of The Glycosynthase Repertoire To Produce
Defined Manno-oligosaccharides
pdb|1ODZ|B Chain B, Expansion Of The Glycosynthase Repertoire To Produce
Defined Manno-oligosaccharides
Length = 386
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 68 TQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSI 106
TQVP Y +P N P N+ + D+ YA +F +N I
Sbjct: 336 TQVPHYWVPANRPENINNGTLEDFQAFYADEFTAFNRDI 374
>pdb|2WHM|A Chain A, Cellvibrio Japonicus Man26a E121a And E320g Double Mutant
In Complex With Mannobiose
Length = 385
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 68 TQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSI 106
TQVP Y +P N P N+ + D+ YA +F +N I
Sbjct: 335 TQVPHYWVPANRPENINNGTLEDFQAFYADEFTAFNRDI 373
>pdb|1GVY|A Chain A, Substrate Distorsion By Beta-Mannanase From Pseudomonas
Cellulosa
Length = 383
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 68 TQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSI 106
TQVP Y +P N P N+ + D+ YA +F +N I
Sbjct: 335 TQVPHYWVPANRPENINNGTLEDFQAFYADEFTAFNRDI 373
>pdb|1NNI|1 Chain 1, Azobenzene Reductase From Bacillus Subtilis
Length = 174
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 14/96 (14%)
Query: 102 YNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY-------PNYSGY 154
Y ++++T++I+L ++ + + NG+ ++ + + V QRV + P Y
Sbjct: 22 YIAALYHTDLIDLSEFV----LPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPEYHSG 77
Query: 155 FSGEILHSMDYKSPDQIRNKRV---LVVGAGNSGCD 187
SG + +++D+ S +Q + K V V G G G +
Sbjct: 78 XSGALKNALDFLSSEQFKYKPVALLAVAGGGKGGIN 113
>pdb|2IY9|A Chain A, Crystal Structure Of The A-Subunit Of The Ab5 Toxin From
E. Coli
Length = 347
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 23/125 (18%)
Query: 73 YPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW---------EV 123
+P+ + +Y + + M + S + VY H++ ++ + + +D W V
Sbjct: 78 FPVKKSEALYIHGTAMASLIASRYGIYGVYPHALISSRRVIPDGVQDSWIRAIESIMSNV 137
Query: 124 ELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGN 183
L+ G++K I + G + VA ++ E+L M N R++V GN
Sbjct: 138 FLAPGEEK---IINISGGQKGVASASVWT-----ELLSRMGRN------NDRLIVAAVGN 183
Query: 184 SGCDI 188
G DI
Sbjct: 184 DGADI 188
>pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|B Chain B, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|C Chain C, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|D Chain D, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
Length = 323
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 4/139 (2%)
Query: 90 DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149
D ++ + K + Y + V +E D + V+ + K D + + G +R
Sbjct: 71 DMIKVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGV 130
Query: 150 NYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR---- 205
F+G + +N+ V V+G G+S + A S +S KVY RR
Sbjct: 131 PGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFK 190
Query: 206 GYHYYPKFIDGKPTPQWML 224
Y + + KP +++L
Sbjct: 191 AQPIYVETVKKKPNVEFVL 209
>pdb|1TDE|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 27/150 (18%)
Query: 69 QVPDYPMPDNYPVYPN---HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL 125
Q+ +N+P PN ++++ + +A KF+ TE+I ++ I +V+L
Sbjct: 42 QLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFE--------TEII----FDHINKVDL 89
Query: 126 SN------GKKKKY--DFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNKR 175
N G +Y D + + GA ARY F G + + RN++
Sbjct: 90 QNRPFRLNGDNGEYTCDALIIATGAS--ARYLGLPSEEAFKGRGVSACATCDGFFYRNQK 147
Query: 176 VLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205
V V+G GN+ + A+ S+ + +V+ RR
Sbjct: 148 VAVIGGGNTAVEEALYLSNIASEVHLIHRR 177
>pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From
Escherichia Coli
Length = 320
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 27/150 (18%)
Query: 69 QVPDYPMPDNYPVYPN---HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL 125
Q+ +N+P PN ++++ + +A KF+ TE+I ++ I +V+L
Sbjct: 42 QLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFE--------TEII----FDHINKVDL 89
Query: 126 SN------GKKKKY--DFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNKR 175
N G +Y D + + GA ARY F G + + RN++
Sbjct: 90 QNRPFRLNGDNGEYTCDALIIATGAS--ARYLGLPSEEAFKGRGVSACATCDGFFYRNQK 147
Query: 176 VLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205
V V+G GN+ + A+ S+ + +V+ RR
Sbjct: 148 VAVIGGGNTAVEEALYLSNIASEVHLIHRR 177
>pdb|3F8P|A Chain A, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|B Chain B, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|C Chain C, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|D Chain D, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8R|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
Length = 323
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 4/139 (2%)
Query: 90 DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149
D ++ + K + Y + V +E D + V+ + K D + + G +R
Sbjct: 71 DMIKVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGV 130
Query: 150 NYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR---- 205
F+G + +N+ V V+G G+S + A S +S KVY RR
Sbjct: 131 PGEQEFAGRGISYCSVCDAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFK 190
Query: 206 GYHYYPKFIDGKPTPQWML 224
Y + + KP +++L
Sbjct: 191 AQPIYVETVKKKPNVEFVL 209
>pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|B Chain B, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|E Chain E, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|F Chain F, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 320
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 27/150 (18%)
Query: 69 QVPDYPMPDNYPVYPN---HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL 125
Q+ +N+P PN ++++ + +A KF+ TE+I ++ I +V+L
Sbjct: 42 QLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFE--------TEII----FDHINKVDL 89
Query: 126 SN------GKKKKY--DFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNKR 175
N G +Y D + + GA ARY F G + + RN++
Sbjct: 90 QNRPFRLNGDNGEYTCDALIIATGAS--ARYLGLPSEEAFKGRGVSASATCDGFFYRNQK 147
Query: 176 VLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205
V V+G GN+ + A+ S+ + +V+ RR
Sbjct: 148 VAVIGGGNTAVEEALYLSNIASEVHLIHRR 177
>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The
Moeb-Moad Protein Complex
pdb|1JWA|B Chain B, Structure Of The Atp-Bound Moeb-Moad Protein Complex
pdb|1JW9|B Chain B, Structure Of The Native Moeb-Moad Protein Complex
Length = 249
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 159 ILHSMDYKSPDQIRNKRVLVVGAGNSGC 186
IL D+ + +++ RVL+VG G GC
Sbjct: 17 ILRGFDFDGQEALKDSRVLIVGLGGLGC 44
>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
pdb|4B1B|B Chain B, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
Length = 542
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 283 ILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFI--- 339
ILPK K + +V F D T DT++YA G ++ E L + + I
Sbjct: 284 ILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIAD 343
Query: 340 HIAPRNLDNIFFFGFV 355
H++ N+ +IF G V
Sbjct: 344 HLSCTNIPSIFAVGDV 359
>pdb|3R9U|A Chain A, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni.
pdb|3R9U|B Chain B, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni
Length = 315
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 60/144 (41%), Gaps = 13/144 (9%)
Query: 69 QVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYN--HSIFNTEVINLEQYEDIWEVELS 126
Q+ +NYP + + ++++ + H E I L+ + + ++L
Sbjct: 42 QITSSSEIENYPGVAQVXDGISFXAPWSEQCXRFGLKHEXVGVEQI-LKNSDGSFTIKLE 100
Query: 127 NGKKKKYDFIAVCNGAQRVARYPNYSGY-----FSGEILHSMDYKSPDQIRNKRVLVVGA 181
GK + + VC G+ P +G+ F G+ + + +NK V V+G
Sbjct: 101 GGKTELAKAVIVCTGSA-----PKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGG 155
Query: 182 GNSGCDIAVDASHHSEKVYHSTRR 205
G++ + A+ ++ K+Y RR
Sbjct: 156 GDTALEEALYLANICSKIYLIHRR 179
>pdb|3GFQ|A Chain A, Structure Of Yhda, K109l Variant
pdb|3GFQ|B Chain B, Structure Of Yhda, K109l Variant
pdb|3GFQ|C Chain C, Structure Of Yhda, K109l Variant
pdb|3GFQ|D Chain D, Structure Of Yhda, K109l Variant
Length = 174
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 102 YNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY-------PNYSGY 154
Y ++++T++I+L ++ + + NG+ ++ + + V QRV + P Y
Sbjct: 22 YIAALYHTDLIDLSEFV----LPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPEYHSG 77
Query: 155 FSGEILHSMDYKSPDQIRNK 174
SG + +++D+ S +Q + K
Sbjct: 78 MSGALKNALDFLSSEQFKYK 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,742,366
Number of Sequences: 62578
Number of extensions: 678260
Number of successful extensions: 1557
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1489
Number of HSP's gapped (non-prelim): 77
length of query: 433
length of database: 14,973,337
effective HSP length: 102
effective length of query: 331
effective length of database: 8,590,381
effective search space: 2843416111
effective search space used: 2843416111
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)