Query psy2398
Match_columns 433
No_of_seqs 242 out of 3062
Neff 10.2
Searched_HMMs 46136
Date Fri Aug 16 23:59:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00743 FMO-like: Flavin-bind 100.0 3.6E-75 7.7E-80 568.2 18.2 414 8-432 2-446 (531)
2 PLN02172 flavin-containing mon 100.0 3.4E-59 7.5E-64 450.7 33.0 359 6-431 9-402 (461)
3 KOG1399|consensus 100.0 2.8E-50 6E-55 380.6 25.5 356 6-430 5-384 (448)
4 COG2072 TrkA Predicted flavopr 100.0 3.1E-41 6.7E-46 324.8 33.9 374 5-384 6-418 (443)
5 TIGR01292 TRX_reduct thioredox 100.0 5.6E-34 1.2E-38 265.0 27.8 285 8-378 1-298 (300)
6 PRK10262 thioredoxin reductase 100.0 1.1E-32 2.4E-37 257.9 26.3 290 4-378 3-312 (321)
7 COG0492 TrxB Thioredoxin reduc 100.0 2.5E-32 5.4E-37 248.0 26.0 278 6-373 2-293 (305)
8 COG1249 Lpd Pyruvate/2-oxoglut 100.0 7.6E-33 1.6E-37 263.4 22.2 310 6-378 3-334 (454)
9 PLN02507 glutathione reductase 100.0 1.2E-32 2.6E-37 270.5 22.7 307 7-380 25-364 (499)
10 PRK05249 soluble pyridine nucl 100.0 2.6E-32 5.6E-37 268.1 23.9 307 5-380 3-336 (461)
11 PRK15317 alkyl hydroperoxide r 100.0 1.5E-31 3.2E-36 264.9 29.2 291 5-382 209-513 (517)
12 TIGR01421 gluta_reduc_1 glutat 100.0 3.8E-32 8.3E-37 264.5 24.0 302 7-379 2-328 (450)
13 PF13738 Pyr_redox_3: Pyridine 100.0 5.3E-33 1.1E-37 243.2 14.1 189 11-208 1-202 (203)
14 TIGR01424 gluta_reduc_2 glutat 100.0 1.9E-31 4.2E-36 259.9 26.3 302 7-379 2-326 (446)
15 TIGR03140 AhpF alkyl hydropero 100.0 4.6E-31 1E-35 261.0 27.8 288 5-379 210-511 (515)
16 PRK06116 glutathione reductase 100.0 1.3E-31 2.8E-36 262.0 22.9 303 6-380 3-329 (450)
17 PRK14694 putative mercuric red 100.0 1.8E-31 3.9E-36 261.7 24.0 312 4-380 3-336 (468)
18 PRK06416 dihydrolipoamide dehy 100.0 1.8E-31 3.9E-36 262.0 22.6 306 6-380 3-335 (462)
19 PRK14727 putative mercuric red 100.0 3.7E-31 7.9E-36 259.9 23.9 313 4-379 13-346 (479)
20 PRK06370 mercuric reductase; V 100.0 4.2E-31 9E-36 259.2 24.2 306 5-379 3-334 (463)
21 PRK13512 coenzyme A disulfide 100.0 7.4E-31 1.6E-35 255.1 23.3 287 8-380 2-313 (438)
22 COG1252 Ndh NADH dehydrogenase 100.0 1.8E-31 3.9E-36 247.5 18.0 302 7-395 3-350 (405)
23 PRK07818 dihydrolipoamide dehy 100.0 1.7E-30 3.7E-35 254.9 26.0 308 6-380 3-337 (466)
24 TIGR03143 AhpF_homolog putativ 100.0 5.4E-30 1.2E-34 255.2 29.1 284 6-377 3-305 (555)
25 PRK06467 dihydrolipoamide dehy 100.0 1.4E-30 3E-35 255.1 22.3 307 6-380 3-338 (471)
26 PRK07845 flavoprotein disulfid 100.0 6.4E-30 1.4E-34 250.3 27.0 310 7-380 1-338 (466)
27 KOG0405|consensus 100.0 4E-30 8.6E-35 225.1 22.4 315 4-378 17-349 (478)
28 PTZ00058 glutathione reductase 100.0 2.4E-30 5.2E-35 255.0 23.6 306 6-379 47-432 (561)
29 PRK06292 dihydrolipoamide dehy 100.0 2E-30 4.3E-35 254.7 22.2 307 7-379 3-331 (460)
30 TIGR01423 trypano_reduc trypan 100.0 1.7E-30 3.6E-35 253.7 21.0 312 6-379 2-351 (486)
31 TIGR02053 MerA mercuric reduct 100.0 1.8E-30 3.9E-35 254.9 21.2 303 8-379 1-329 (463)
32 PRK08010 pyridine nucleotide-d 100.0 8.5E-30 1.8E-34 248.6 25.8 298 7-379 3-317 (441)
33 PTZ00318 NADH dehydrogenase-li 100.0 3.8E-30 8.3E-35 249.0 23.1 290 6-380 9-347 (424)
34 PRK13748 putative mercuric red 100.0 4.3E-30 9.4E-35 258.4 23.7 308 6-379 97-428 (561)
35 PRK07846 mycothione reductase; 100.0 4.5E-30 9.8E-35 249.8 22.8 307 8-379 2-325 (451)
36 PRK06115 dihydrolipoamide dehy 100.0 9.6E-30 2.1E-34 249.0 25.3 305 7-380 3-339 (466)
37 PRK05976 dihydrolipoamide dehy 100.0 6.1E-30 1.3E-34 251.4 22.3 309 6-380 3-344 (472)
38 PTZ00052 thioredoxin reductase 100.0 2E-30 4.4E-35 255.0 18.7 307 6-379 4-341 (499)
39 PRK04965 NADH:flavorubredoxin 100.0 4.3E-30 9.3E-35 245.6 20.5 285 8-380 3-303 (377)
40 PRK09564 coenzyme A disulfide 100.0 4.9E-30 1.1E-34 251.1 21.1 291 9-380 2-318 (444)
41 PTZ00153 lipoamide dehydrogena 100.0 4.8E-30 1E-34 255.9 20.1 316 5-379 114-495 (659)
42 PLN02546 glutathione reductase 100.0 3.1E-30 6.7E-35 254.4 18.5 304 7-380 79-414 (558)
43 PRK06327 dihydrolipoamide dehy 100.0 1.1E-29 2.4E-34 249.3 22.4 310 6-380 3-348 (475)
44 TIGR01350 lipoamide_DH dihydro 100.0 2.3E-29 4.9E-34 247.4 22.9 305 8-380 2-333 (461)
45 PRK09754 phenylpropionate diox 100.0 1E-29 2.2E-34 244.3 19.7 289 7-380 3-310 (396)
46 PRK07251 pyridine nucleotide-d 100.0 5.7E-29 1.2E-33 242.5 24.9 294 7-379 3-316 (438)
47 TIGR01438 TGR thioredoxin and 100.0 1.9E-29 4.2E-34 246.9 21.5 306 7-379 2-344 (484)
48 PRK14989 nitrite reductase sub 100.0 2.4E-29 5.3E-34 258.6 22.2 287 8-380 4-311 (847)
49 TIGR02374 nitri_red_nirB nitri 100.0 2E-29 4.3E-34 259.7 20.6 285 10-380 1-302 (785)
50 PRK12831 putative oxidoreducta 100.0 6.1E-29 1.3E-33 242.1 22.2 293 6-379 139-459 (464)
51 TIGR01316 gltA glutamate synth 100.0 1.3E-28 2.8E-33 239.5 24.4 274 6-378 132-447 (449)
52 PRK09853 putative selenate red 100.0 1.5E-28 3.3E-33 250.9 25.0 295 6-385 538-846 (1019)
53 TIGR03452 mycothione_red mycot 100.0 9.3E-29 2E-33 240.9 21.8 307 7-379 2-328 (452)
54 PRK06912 acoL dihydrolipoamide 100.0 7.9E-29 1.7E-33 242.4 21.1 305 9-379 2-330 (458)
55 PRK11749 dihydropyrimidine deh 100.0 2.2E-28 4.8E-33 239.2 20.7 277 6-380 139-451 (457)
56 PRK12779 putative bifunctional 100.0 9.7E-28 2.1E-32 249.0 26.0 297 6-384 305-630 (944)
57 TIGR03315 Se_ygfK putative sel 100.0 4.6E-27 9.9E-32 241.4 24.0 291 7-382 537-841 (1012)
58 TIGR03169 Nterm_to_SelD pyridi 100.0 1.6E-27 3.5E-32 227.2 18.7 283 9-380 1-310 (364)
59 PRK12778 putative bifunctional 100.0 3.2E-27 6.9E-32 243.7 22.2 293 6-380 430-749 (752)
60 PRK12770 putative glutamate sy 100.0 8.6E-27 1.9E-31 220.5 22.7 288 4-380 15-349 (352)
61 PRK12814 putative NADPH-depend 100.0 9.7E-27 2.1E-31 235.4 23.7 291 6-379 192-499 (652)
62 KOG0404|consensus 100.0 1.1E-26 2.3E-31 191.5 18.6 281 6-357 7-294 (322)
63 PRK12775 putative trifunctiona 99.9 1.9E-25 4E-30 234.1 25.6 293 7-380 430-754 (1006)
64 TIGR01318 gltD_gamma_fam gluta 99.9 1.8E-24 3.9E-29 211.2 26.2 291 6-379 140-464 (467)
65 PRK12769 putative oxidoreducta 99.9 1.3E-24 2.8E-29 221.0 26.2 293 6-380 326-651 (654)
66 PRK12810 gltD glutamate syntha 99.9 5.2E-25 1.1E-29 215.8 22.3 287 6-380 142-464 (471)
67 KOG1335|consensus 99.9 2.4E-25 5.3E-30 197.7 15.9 311 6-380 38-378 (506)
68 TIGR03385 CoA_CoA_reduc CoA-di 99.9 6E-25 1.3E-29 213.9 17.8 231 93-379 51-304 (427)
69 KOG2495|consensus 99.9 2.1E-24 4.5E-29 194.9 18.4 293 5-380 53-396 (491)
70 TIGR01317 GOGAT_sm_gam glutama 99.9 1.3E-23 2.8E-28 206.0 24.1 307 7-379 143-477 (485)
71 PRK12809 putative oxidoreducta 99.9 1.7E-23 3.7E-28 211.9 24.7 293 6-380 309-634 (639)
72 PF13434 K_oxygenase: L-lysine 99.9 7.3E-25 1.6E-29 203.9 11.6 191 7-207 2-226 (341)
73 KOG1336|consensus 99.9 1.4E-23 3.1E-28 193.2 19.8 261 7-358 74-352 (478)
74 PRK12771 putative glutamate sy 99.9 1.8E-23 3.8E-28 209.6 21.8 275 6-379 136-442 (564)
75 TIGR01372 soxA sarcosine oxida 99.9 1.2E-22 2.5E-27 214.5 26.6 280 7-382 163-473 (985)
76 PRK13984 putative oxidoreducta 99.9 2.6E-23 5.7E-28 210.4 20.3 289 6-379 282-600 (604)
77 COG3634 AhpF Alkyl hydroperoxi 99.9 3.5E-23 7.6E-28 181.7 17.9 265 5-359 209-492 (520)
78 PLN02852 ferredoxin-NADP+ redu 99.9 5.6E-23 1.2E-27 198.3 20.5 161 6-207 25-221 (491)
79 COG3486 IucD Lysine/ornithine 99.9 3.7E-21 8.1E-26 173.8 24.3 194 4-208 2-226 (436)
80 KOG4716|consensus 99.9 1.7E-21 3.7E-26 170.6 18.4 321 5-379 17-365 (503)
81 COG1251 NirB NAD(P)H-nitrite r 99.9 7.1E-22 1.5E-26 190.3 17.3 290 7-381 3-308 (793)
82 PRK09897 hypothetical protein; 99.8 6.1E-17 1.3E-21 158.4 23.3 196 7-208 1-247 (534)
83 KOG0399|consensus 99.8 5.2E-18 1.1E-22 168.2 13.5 310 7-385 1785-2128(2142)
84 PTZ00188 adrenodoxin reductase 99.8 1.2E-16 2.7E-21 151.8 22.0 162 6-207 38-252 (506)
85 COG0446 HcaD Uncharacterized N 99.7 3.9E-17 8.4E-22 159.0 17.7 283 10-379 1-310 (415)
86 COG4529 Uncharacterized protei 99.7 1.1E-15 2.3E-20 142.6 25.1 199 7-213 1-236 (474)
87 COG0493 GltD NADPH-dependent g 99.7 2.1E-17 4.4E-22 158.2 13.1 294 8-378 124-448 (457)
88 KOG1800|consensus 99.7 5.7E-16 1.2E-20 138.4 20.6 157 7-207 20-215 (468)
89 PRK06567 putative bifunctional 99.7 1.4E-16 3E-21 161.7 17.6 171 6-193 382-570 (1028)
90 KOG1346|consensus 99.6 3.3E-16 7.1E-21 141.2 8.0 301 7-379 178-519 (659)
91 COG2081 Predicted flavoprotein 99.5 6.5E-14 1.4E-18 127.6 12.8 138 7-148 3-171 (408)
92 KOG2755|consensus 99.5 1.2E-13 2.6E-18 117.6 12.3 151 9-206 1-165 (334)
93 PF07992 Pyr_redox_2: Pyridine 99.5 1.1E-14 2.4E-19 126.9 5.0 117 9-153 1-129 (201)
94 PF03486 HI0933_like: HI0933-l 99.5 3.5E-13 7.5E-18 128.3 12.6 138 8-148 1-170 (409)
95 PF13454 NAD_binding_9: FAD-NA 99.5 1.2E-12 2.6E-17 108.5 13.7 127 11-142 1-155 (156)
96 PRK06847 hypothetical protein; 99.4 5.7E-12 1.2E-16 120.9 16.5 140 6-147 3-166 (375)
97 PRK10157 putative oxidoreducta 99.4 1.7E-11 3.6E-16 119.1 16.5 138 5-144 3-164 (428)
98 TIGR02032 GG-red-SF geranylger 99.3 1.4E-11 3E-16 114.1 12.5 133 8-144 1-148 (295)
99 PRK07494 2-octaprenyl-6-methox 99.3 2.1E-11 4.5E-16 117.6 14.0 139 5-145 5-168 (388)
100 PRK08773 2-octaprenyl-3-methyl 99.3 3.3E-11 7.2E-16 116.3 14.7 142 1-145 1-170 (392)
101 PRK07190 hypothetical protein; 99.3 3.3E-11 7.2E-16 118.6 14.8 139 5-145 3-166 (487)
102 KOG3851|consensus 99.3 4.4E-11 9.6E-16 105.0 13.6 114 5-153 37-152 (446)
103 PRK06834 hypothetical protein; 99.3 4.8E-11 1E-15 117.6 15.6 137 7-145 3-157 (488)
104 PRK08244 hypothetical protein; 99.3 3.9E-11 8.4E-16 119.2 14.8 136 8-145 3-160 (493)
105 TIGR02023 BchP-ChlP geranylger 99.3 4.6E-11 1E-15 114.9 14.4 135 8-145 1-156 (388)
106 PRK08013 oxidoreductase; Provi 99.3 5.3E-11 1.2E-15 115.0 14.7 138 7-146 3-170 (400)
107 PRK07333 2-octaprenyl-6-methox 99.3 4.9E-11 1.1E-15 115.7 14.3 137 7-145 1-168 (403)
108 PRK10015 oxidoreductase; Provi 99.3 1.1E-10 2.3E-15 113.4 16.5 137 5-144 3-164 (429)
109 COG3380 Predicted NAD/FAD-depe 99.3 1.1E-11 2.3E-16 106.6 8.3 129 8-141 2-157 (331)
110 PRK08163 salicylate hydroxylas 99.3 3.2E-11 6.9E-16 116.7 11.8 139 6-146 3-168 (396)
111 PRK06184 hypothetical protein; 99.3 7.2E-11 1.6E-15 117.5 14.5 137 7-145 3-169 (502)
112 PRK07588 hypothetical protein; 99.3 6.5E-11 1.4E-15 114.2 13.8 137 8-147 1-161 (391)
113 PRK06753 hypothetical protein; 99.3 4.9E-11 1.1E-15 114.4 12.7 135 8-147 1-155 (373)
114 COG0654 UbiH 2-polyprenyl-6-me 99.3 9.4E-11 2E-15 112.7 14.6 138 7-146 2-164 (387)
115 PRK06183 mhpA 3-(3-hydroxyphen 99.3 1.3E-10 2.9E-15 116.5 16.2 139 6-146 9-176 (538)
116 PRK07045 putative monooxygenas 99.3 1.6E-10 3.5E-15 111.4 15.9 140 5-146 3-167 (388)
117 PRK06617 2-octaprenyl-6-methox 99.3 1.1E-10 2.4E-15 111.7 14.6 137 7-147 1-163 (374)
118 PLN02463 lycopene beta cyclase 99.2 4.3E-11 9.3E-16 115.8 11.5 131 6-144 27-169 (447)
119 PRK08020 ubiF 2-octaprenyl-3-m 99.2 1E-10 2.2E-15 112.9 13.9 139 5-145 3-170 (391)
120 PRK07364 2-octaprenyl-6-methox 99.2 8.6E-11 1.9E-15 114.4 13.3 139 6-146 17-183 (415)
121 PRK06185 hypothetical protein; 99.2 1.4E-10 3E-15 112.6 14.7 142 1-145 1-170 (407)
122 TIGR01790 carotene-cycl lycope 99.2 1.1E-10 2.4E-15 112.5 13.9 132 9-144 1-141 (388)
123 PRK05714 2-octaprenyl-3-methyl 99.2 1.4E-10 3E-15 112.4 14.4 137 8-146 3-170 (405)
124 TIGR01988 Ubi-OHases Ubiquinon 99.2 1.4E-10 3.1E-15 111.7 13.8 135 9-145 1-164 (385)
125 PRK05868 hypothetical protein; 99.2 1.9E-10 4.2E-15 109.8 14.4 138 7-147 1-163 (372)
126 PRK04176 ribulose-1,5-biphosph 99.2 8.8E-11 1.9E-15 105.4 11.0 132 6-144 24-173 (257)
127 TIGR00292 thiazole biosynthesi 99.2 2.2E-10 4.7E-15 102.5 12.7 132 6-143 20-169 (254)
128 COG0644 FixC Dehydrogenases (f 99.2 2.4E-10 5.3E-15 110.1 14.0 136 7-144 3-152 (396)
129 PRK07608 ubiquinone biosynthes 99.2 2.5E-10 5.4E-15 110.1 13.9 134 7-145 5-168 (388)
130 PRK07236 hypothetical protein; 99.2 7E-10 1.5E-14 106.8 16.9 134 6-147 5-157 (386)
131 TIGR01984 UbiH 2-polyprenyl-6- 99.2 2.2E-10 4.8E-15 110.2 12.9 134 9-145 1-163 (382)
132 PRK09126 hypothetical protein; 99.2 5.5E-10 1.2E-14 107.9 15.4 137 7-145 3-168 (392)
133 PRK06126 hypothetical protein; 99.2 7.5E-10 1.6E-14 111.5 16.8 143 1-145 1-189 (545)
134 PRK08849 2-octaprenyl-3-methyl 99.2 5.4E-10 1.2E-14 107.4 14.9 138 8-147 4-170 (384)
135 PRK08850 2-octaprenyl-6-methox 99.2 5E-10 1.1E-14 108.5 14.6 137 7-145 4-169 (405)
136 PRK11445 putative oxidoreducta 99.2 4.2E-10 9.2E-15 106.7 13.6 136 7-146 1-159 (351)
137 PRK07538 hypothetical protein; 99.2 1.5E-09 3.1E-14 105.5 17.6 138 8-146 1-167 (413)
138 PRK05732 2-octaprenyl-6-methox 99.2 4.2E-10 9.1E-15 108.8 13.8 137 7-145 3-170 (395)
139 PLN02697 lycopene epsilon cycl 99.2 3.1E-10 6.7E-15 111.6 12.5 129 6-144 107-248 (529)
140 PRK08132 FAD-dependent oxidore 99.2 1.1E-09 2.4E-14 110.2 16.7 139 5-145 21-186 (547)
141 PF01494 FAD_binding_3: FAD bi 99.2 1.2E-10 2.7E-15 110.7 9.3 135 8-145 2-173 (356)
142 PF05834 Lycopene_cycl: Lycope 99.1 7.8E-10 1.7E-14 105.6 13.7 126 9-143 1-141 (374)
143 PRK08243 4-hydroxybenzoate 3-m 99.1 7E-10 1.5E-14 107.0 13.5 137 8-147 3-166 (392)
144 TIGR01989 COQ6 Ubiquinone bios 99.1 5.4E-10 1.2E-14 109.2 12.8 138 8-147 1-186 (437)
145 TIGR02028 ChlP geranylgeranyl 99.1 1.3E-09 2.9E-14 104.9 14.7 134 8-144 1-160 (398)
146 PRK06475 salicylate hydroxylas 99.1 8.4E-10 1.8E-14 106.7 13.2 138 8-147 3-170 (400)
147 TIGR00275 flavoprotein, HI0933 99.1 7.7E-10 1.7E-14 106.5 12.8 134 11-147 1-163 (400)
148 TIGR03219 salicylate_mono sali 99.1 1.2E-09 2.5E-14 106.3 14.0 133 8-145 1-160 (414)
149 PLN00093 geranylgeranyl diphos 99.1 1.5E-09 3.2E-14 105.7 14.0 138 5-145 37-200 (450)
150 TIGR02360 pbenz_hydroxyl 4-hyd 99.1 1.5E-09 3.3E-14 104.4 12.7 136 8-147 3-166 (390)
151 PF01266 DAO: FAD dependent ox 99.1 5.3E-10 1.1E-14 106.5 9.4 60 84-146 145-205 (358)
152 COG1635 THI4 Ribulose 1,5-bisp 99.1 1E-09 2.2E-14 91.8 9.6 128 8-142 31-176 (262)
153 COG1148 HdrA Heterodisulfide r 99.1 3.9E-09 8.4E-14 98.1 14.3 42 8-49 125-166 (622)
154 PRK06996 hypothetical protein; 99.0 3.6E-09 7.8E-14 102.2 14.5 132 5-142 9-172 (398)
155 COG0579 Predicted dehydrogenas 99.0 9.6E-10 2.1E-14 103.9 9.3 138 7-146 3-213 (429)
156 PF00070 Pyr_redox: Pyridine n 99.0 5.5E-09 1.2E-13 76.0 11.0 80 9-128 1-80 (80)
157 PRK08294 phenol 2-monooxygenas 99.0 8.2E-09 1.8E-13 104.8 15.4 143 5-147 30-213 (634)
158 PRK12409 D-amino acid dehydrog 99.0 1.5E-08 3.2E-13 98.5 16.3 58 86-145 197-259 (410)
159 PLN02927 antheraxanthin epoxid 99.0 1.1E-08 2.4E-13 102.6 15.6 137 6-146 80-250 (668)
160 PRK11728 hydroxyglutarate oxid 99.0 1.8E-09 3.9E-14 104.2 8.9 57 85-144 148-204 (393)
161 TIGR01377 soxA_mon sarcosine o 99.0 9.7E-09 2.1E-13 98.8 13.3 59 84-145 143-201 (380)
162 PRK11259 solA N-methyltryptoph 98.9 1.1E-08 2.5E-13 98.1 13.7 63 84-149 147-209 (376)
163 PRK12266 glpD glycerol-3-phosp 98.9 1.5E-08 3.2E-13 100.6 14.8 58 86-145 155-217 (508)
164 TIGR01789 lycopene_cycl lycope 98.9 1E-08 2.2E-13 97.5 13.0 127 9-144 1-138 (370)
165 PF01946 Thi4: Thi4 family; PD 98.9 7E-09 1.5E-13 87.4 10.1 129 7-142 17-163 (230)
166 PRK05192 tRNA uridine 5-carbox 98.9 1.7E-08 3.7E-13 99.6 14.0 136 6-144 3-157 (618)
167 PRK13369 glycerol-3-phosphate 98.9 2.6E-08 5.7E-13 98.9 14.8 59 85-145 154-216 (502)
168 PRK13339 malate:quinone oxidor 98.9 3.2E-08 6.9E-13 96.7 14.7 40 4-43 3-44 (497)
169 COG1249 Lpd Pyruvate/2-oxoglut 98.9 3.1E-08 6.8E-13 95.4 14.1 105 5-151 171-277 (454)
170 TIGR01350 lipoamide_DH dihydro 98.9 7.1E-08 1.5E-12 95.2 16.8 102 6-149 169-272 (461)
171 PRK01747 mnmC bifunctional tRN 98.9 1.3E-08 2.8E-13 104.6 12.0 59 84-145 406-464 (662)
172 PTZ00383 malate:quinone oxidor 98.9 1.7E-08 3.8E-13 98.8 11.4 61 84-145 209-274 (497)
173 PLN02661 Putative thiazole syn 98.8 2.1E-08 4.6E-13 92.3 10.4 130 6-142 91-242 (357)
174 KOG2614|consensus 98.8 3.4E-08 7.4E-13 90.8 11.2 36 7-42 2-37 (420)
175 PRK06481 fumarate reductase fl 98.8 2.2E-07 4.7E-12 92.4 17.8 137 6-144 60-251 (506)
176 TIGR01813 flavo_cyto_c flavocy 98.8 1.4E-07 3.1E-12 92.5 16.4 135 9-145 1-193 (439)
177 PRK05329 anaerobic glycerol-3- 98.8 6E-07 1.3E-11 86.2 19.9 33 8-40 3-35 (422)
178 KOG2820|consensus 98.8 4.4E-08 9.6E-13 87.3 10.6 145 4-150 4-218 (399)
179 PRK08401 L-aspartate oxidase; 98.8 1.5E-07 3.3E-12 92.6 15.4 135 7-145 1-176 (466)
180 TIGR03329 Phn_aa_oxid putative 98.8 8.9E-08 1.9E-12 94.2 13.8 62 84-149 181-242 (460)
181 PRK08274 tricarballylate dehyd 98.8 1E-07 2.2E-12 94.1 14.3 137 6-144 3-192 (466)
182 PLN02985 squalene monooxygenas 98.8 1.8E-07 3.9E-12 92.8 15.6 139 5-146 41-210 (514)
183 PF13450 NAD_binding_8: NAD(P) 98.8 8.2E-09 1.8E-13 72.0 4.4 38 12-49 1-38 (68)
184 PRK04965 NADH:flavorubredoxin 98.8 1.1E-07 2.3E-12 91.3 13.5 97 7-142 141-237 (377)
185 PF01134 GIDA: Glucose inhibit 98.8 9.1E-08 2E-12 89.6 12.3 123 9-143 1-151 (392)
186 PRK06416 dihydrolipoamide dehy 98.8 1.5E-07 3.2E-12 92.9 14.4 101 7-149 172-275 (462)
187 PF12831 FAD_oxidored: FAD dep 98.8 5.1E-09 1.1E-13 101.7 3.8 130 9-142 1-148 (428)
188 COG1232 HemY Protoporphyrinoge 98.7 1E-07 2.2E-12 91.0 12.0 53 88-142 214-266 (444)
189 PRK05976 dihydrolipoamide dehy 98.7 2.5E-07 5.4E-12 91.4 15.3 102 7-150 180-285 (472)
190 PRK05249 soluble pyridine nucl 98.7 2E-07 4.4E-12 91.9 14.5 102 6-149 174-275 (461)
191 TIGR00136 gidA glucose-inhibit 98.7 2.4E-07 5.1E-12 91.5 14.6 134 8-144 1-154 (617)
192 PRK07251 pyridine nucleotide-d 98.7 2.3E-07 5E-12 90.9 14.5 100 7-149 157-256 (438)
193 PRK11101 glpA sn-glycerol-3-ph 98.7 1.5E-07 3.2E-12 94.3 13.3 37 5-41 4-40 (546)
194 TIGR03364 HpnW_proposed FAD de 98.7 1.5E-07 3.3E-12 90.0 12.7 34 8-41 1-34 (365)
195 PRK06912 acoL dihydrolipoamide 98.7 3.4E-07 7.4E-12 90.1 15.1 102 6-149 169-271 (458)
196 PF00890 FAD_binding_2: FAD bi 98.7 2.7E-07 5.8E-12 90.0 14.2 135 9-145 1-204 (417)
197 PRK09754 phenylpropionate diox 98.7 2.2E-07 4.8E-12 89.7 13.5 99 7-147 144-242 (396)
198 PRK00711 D-amino acid dehydrog 98.7 3.4E-07 7.4E-12 89.2 14.9 58 85-145 200-258 (416)
199 COG2907 Predicted NAD/FAD-bind 98.7 9.2E-08 2E-12 85.6 9.7 42 4-46 5-46 (447)
200 PRK06116 glutathione reductase 98.7 2.8E-07 6E-12 90.6 14.3 101 7-149 167-268 (450)
201 KOG0685|consensus 98.7 9E-08 1.9E-12 89.5 9.8 40 6-45 20-60 (498)
202 TIGR01424 gluta_reduc_2 glutat 98.7 3.2E-07 6.9E-12 90.0 14.0 100 7-148 166-265 (446)
203 PTZ00367 squalene epoxidase; P 98.7 2.8E-07 6.1E-12 91.9 13.6 35 6-40 32-66 (567)
204 TIGR02053 MerA mercuric reduct 98.7 4.2E-07 9.1E-12 89.7 14.8 101 7-149 166-269 (463)
205 PRK07846 mycothione reductase; 98.7 2.9E-07 6.2E-12 90.2 13.4 101 7-150 166-266 (451)
206 COG1231 Monoamine oxidase [Ami 98.7 2.8E-07 6E-12 86.2 12.2 42 4-45 4-45 (450)
207 PRK06327 dihydrolipoamide dehy 98.7 8.2E-07 1.8E-11 87.8 16.0 102 6-149 182-287 (475)
208 COG0665 DadA Glycine/D-amino a 98.7 4.4E-07 9.5E-12 87.5 13.9 59 85-145 155-213 (387)
209 PRK07845 flavoprotein disulfid 98.6 5.3E-07 1.2E-11 88.8 14.4 101 7-149 177-277 (466)
210 PLN02507 glutathione reductase 98.6 5.3E-07 1.1E-11 89.4 14.4 101 7-149 203-303 (499)
211 PRK06370 mercuric reductase; V 98.6 5.9E-07 1.3E-11 88.6 14.6 101 7-149 171-274 (463)
212 PRK07233 hypothetical protein; 98.6 4.9E-07 1.1E-11 88.6 14.0 38 9-46 1-38 (434)
213 PRK07818 dihydrolipoamide dehy 98.6 6.2E-07 1.3E-11 88.5 14.5 101 7-149 172-276 (466)
214 TIGR01421 gluta_reduc_1 glutat 98.6 5.9E-07 1.3E-11 88.1 14.2 101 7-149 166-268 (450)
215 TIGR01320 mal_quin_oxido malat 98.6 4.3E-07 9.4E-12 89.3 13.2 59 85-145 177-241 (483)
216 PRK07804 L-aspartate oxidase; 98.6 6.6E-07 1.4E-11 89.6 14.1 138 6-145 15-211 (541)
217 PRK12842 putative succinate de 98.6 8.3E-07 1.8E-11 89.7 14.9 42 4-45 6-47 (574)
218 KOG2415|consensus 98.6 4E-07 8.7E-12 83.4 10.9 137 6-144 75-256 (621)
219 PRK05257 malate:quinone oxidor 98.6 9.6E-07 2.1E-11 87.0 14.4 58 86-145 183-247 (494)
220 TIGR01373 soxB sarcosine oxida 98.6 9.7E-07 2.1E-11 85.7 14.2 57 85-144 182-240 (407)
221 PRK08255 salicylyl-CoA 5-hydro 98.6 1.2E-07 2.6E-12 98.7 8.4 120 8-146 1-143 (765)
222 PRK07843 3-ketosteroid-delta-1 98.6 1.2E-06 2.7E-11 88.0 15.2 46 1-46 1-46 (557)
223 TIGR00551 nadB L-aspartate oxi 98.6 1.1E-06 2.5E-11 87.0 14.7 136 7-145 2-190 (488)
224 PRK06115 dihydrolipoamide dehy 98.6 1.1E-06 2.4E-11 86.6 14.4 101 6-148 173-278 (466)
225 TIGR03452 mycothione_red mycot 98.6 1E-06 2.2E-11 86.5 13.9 100 7-149 169-268 (452)
226 PRK06854 adenylylsulfate reduc 98.6 2.6E-07 5.7E-12 93.6 10.0 36 7-42 11-48 (608)
227 TIGR01812 sdhA_frdA_Gneg succi 98.6 1.2E-06 2.6E-11 88.7 14.7 35 9-43 1-35 (566)
228 PRK08275 putative oxidoreducta 98.6 2.3E-07 5E-12 93.3 9.2 138 6-145 8-201 (554)
229 PRK09078 sdhA succinate dehydr 98.6 1.2E-06 2.7E-11 88.6 14.4 39 5-43 10-48 (598)
230 COG0578 GlpA Glycerol-3-phosph 98.5 6.2E-07 1.3E-11 86.9 11.3 41 5-45 10-50 (532)
231 PRK08010 pyridine nucleotide-d 98.5 1.4E-06 3E-11 85.5 14.1 100 6-148 157-256 (441)
232 PRK06175 L-aspartate oxidase; 98.5 1E-06 2.2E-11 85.7 13.0 38 6-44 3-40 (433)
233 PRK07121 hypothetical protein; 98.5 3.8E-07 8.2E-12 90.6 10.1 40 6-45 19-58 (492)
234 PRK06263 sdhA succinate dehydr 98.5 2.8E-07 6.1E-12 92.5 9.1 136 5-144 5-197 (543)
235 PRK05945 sdhA succinate dehydr 98.5 1.2E-06 2.5E-11 88.6 13.5 59 85-145 134-198 (575)
236 PRK13977 myosin-cross-reactive 98.5 2.8E-06 6E-11 83.4 15.4 41 7-47 22-66 (576)
237 PRK06069 sdhA succinate dehydr 98.5 1.5E-06 3.3E-11 87.9 14.2 40 5-44 3-45 (577)
238 PRK07803 sdhA succinate dehydr 98.5 6.8E-07 1.5E-11 90.9 11.6 37 7-43 8-44 (626)
239 KOG0029|consensus 98.5 1.1E-07 2.3E-12 93.0 5.5 43 5-47 13-55 (501)
240 PRK06452 sdhA succinate dehydr 98.5 3.1E-06 6.6E-11 85.3 16.1 39 6-44 4-42 (566)
241 COG0029 NadB Aspartate oxidase 98.5 1.2E-05 2.6E-10 76.1 18.7 32 9-41 9-40 (518)
242 TIGR01423 trypano_reduc trypan 98.5 1.7E-06 3.7E-11 85.3 13.9 102 6-149 186-291 (486)
243 PRK06467 dihydrolipoamide dehy 98.5 1.9E-06 4.2E-11 85.0 14.1 101 6-149 173-277 (471)
244 PRK14727 putative mercuric red 98.5 2.3E-06 4.9E-11 84.7 14.5 99 7-149 188-286 (479)
245 PLN02464 glycerol-3-phosphate 98.5 1.1E-06 2.5E-11 89.1 12.5 40 5-44 69-108 (627)
246 TIGR03385 CoA_CoA_reduc CoA-di 98.5 1.4E-06 3E-11 85.1 12.5 99 7-148 137-235 (427)
247 PRK07573 sdhA succinate dehydr 98.5 3.2E-06 7E-11 86.1 15.4 37 7-43 35-71 (640)
248 PRK14694 putative mercuric red 98.5 2.4E-06 5.2E-11 84.4 14.1 99 7-149 178-276 (468)
249 PRK09231 fumarate reductase fl 98.5 2.7E-06 5.9E-11 85.9 14.6 39 6-44 3-43 (582)
250 PRK13512 coenzyme A disulfide 98.5 1.6E-06 3.5E-11 84.8 12.5 96 7-148 148-243 (438)
251 TIGR01438 TGR thioredoxin and 98.5 2.6E-06 5.7E-11 84.1 14.0 100 7-149 180-282 (484)
252 PTZ00139 Succinate dehydrogena 98.5 1.4E-06 3E-11 88.4 12.2 39 6-44 28-66 (617)
253 PRK09564 coenzyme A disulfide 98.5 2.3E-06 5.1E-11 84.0 13.5 100 7-148 149-248 (444)
254 COG1252 Ndh NADH dehydrogenase 98.5 1.8E-06 3.9E-11 81.4 11.7 100 8-151 156-269 (405)
255 PTZ00052 thioredoxin reductase 98.5 3.3E-06 7.1E-11 83.8 14.3 100 7-149 182-281 (499)
256 PRK08958 sdhA succinate dehydr 98.5 2.6E-06 5.5E-11 86.1 13.7 43 1-43 1-43 (588)
257 PRK06134 putative FAD-binding 98.5 2.9E-06 6.3E-11 85.8 14.0 43 5-47 10-52 (581)
258 PRK13748 putative mercuric red 98.5 3.3E-06 7.1E-11 85.6 14.4 99 7-149 270-368 (561)
259 PLN00128 Succinate dehydrogena 98.4 3.6E-06 7.7E-11 85.6 14.3 39 6-44 49-87 (635)
260 PRK07208 hypothetical protein; 98.4 5.8E-07 1.2E-11 89.2 8.5 44 6-49 3-46 (479)
261 TIGR01176 fum_red_Fp fumarate 98.4 5.1E-06 1.1E-10 83.7 15.2 38 7-44 3-42 (580)
262 PTZ00058 glutathione reductase 98.4 3.9E-06 8.6E-11 83.8 14.1 101 7-149 237-339 (561)
263 PRK07057 sdhA succinate dehydr 98.4 5.6E-06 1.2E-10 83.8 15.3 39 5-43 10-48 (591)
264 PF04820 Trp_halogenase: Trypt 98.4 6.9E-07 1.5E-11 87.3 8.2 58 83-143 151-210 (454)
265 PRK08071 L-aspartate oxidase; 98.4 4E-06 8.7E-11 83.4 13.6 37 7-44 3-39 (510)
266 TIGR02374 nitri_red_nirB nitri 98.4 2.9E-06 6.4E-11 88.6 13.1 101 7-148 140-240 (785)
267 PRK12839 hypothetical protein; 98.4 5.4E-06 1.2E-10 83.4 14.3 44 5-48 6-49 (572)
268 PRK06292 dihydrolipoamide dehy 98.4 5.7E-06 1.2E-10 81.6 14.2 101 6-149 168-271 (460)
269 PTZ00306 NADH-dependent fumara 98.4 9.1E-06 2E-10 88.4 16.7 40 6-45 408-447 (1167)
270 PRK08205 sdhA succinate dehydr 98.4 5.9E-06 1.3E-10 83.6 14.3 38 6-44 4-41 (583)
271 COG1233 Phytoene dehydrogenase 98.4 4.4E-07 9.5E-12 89.7 5.9 43 7-49 3-45 (487)
272 KOG1335|consensus 98.4 3.4E-06 7.4E-11 76.7 10.8 102 5-148 209-316 (506)
273 PRK12845 3-ketosteroid-delta-1 98.4 1.6E-05 3.5E-10 79.8 16.6 43 6-49 15-57 (564)
274 PRK08626 fumarate reductase fl 98.4 1.5E-06 3.3E-11 88.7 9.1 39 5-43 3-41 (657)
275 PRK14989 nitrite reductase sub 98.3 5.3E-06 1.1E-10 86.9 13.2 101 7-148 145-247 (847)
276 PF06039 Mqo: Malate:quinone o 98.3 6.1E-06 1.3E-10 77.8 11.7 38 6-43 2-41 (488)
277 PLN02546 glutathione reductase 98.3 8.2E-06 1.8E-10 81.6 13.5 102 6-149 251-353 (558)
278 TIGR00137 gid_trmFO tRNA:m(5)U 98.3 2.4E-06 5.1E-11 81.5 8.8 36 8-43 1-36 (433)
279 PTZ00153 lipoamide dehydrogena 98.3 9.3E-06 2E-10 82.4 13.4 102 7-150 312-431 (659)
280 COG0446 HcaD Uncharacterized N 98.3 7.1E-06 1.5E-10 79.8 12.3 100 7-147 136-238 (415)
281 PF00070 Pyr_redox: Pyridine n 98.3 3.7E-07 8E-12 66.3 2.1 35 175-209 1-35 (80)
282 PRK05335 tRNA (uracil-5-)-meth 98.3 4E-06 8.6E-11 79.5 9.2 35 8-42 3-37 (436)
283 TIGR02485 CobZ_N-term precorri 98.3 8.4E-06 1.8E-10 79.7 11.8 58 85-144 122-183 (432)
284 PTZ00318 NADH dehydrogenase-li 98.3 1.1E-05 2.5E-10 78.5 12.4 91 8-142 174-278 (424)
285 PRK12843 putative FAD-binding 98.2 4.3E-05 9.3E-10 77.3 16.7 42 7-48 16-57 (578)
286 COG0445 GidA Flavin-dependent 98.2 3.5E-06 7.5E-11 80.4 8.1 134 6-143 3-157 (621)
287 PLN02815 L-aspartate oxidase 98.2 1.5E-05 3.3E-10 80.3 13.2 37 7-44 29-65 (594)
288 PRK08641 sdhA succinate dehydr 98.2 2.2E-05 4.9E-10 79.4 14.4 37 7-43 3-39 (589)
289 PRK07512 L-aspartate oxidase; 98.2 1.5E-05 3.2E-10 79.4 12.5 34 6-41 8-41 (513)
290 TIGR00031 UDP-GALP_mutase UDP- 98.2 1.6E-06 3.4E-11 82.0 5.3 42 7-48 1-42 (377)
291 PRK11883 protoporphyrinogen ox 98.2 1.5E-06 3.2E-11 85.7 5.1 41 8-48 1-43 (451)
292 PLN02268 probable polyamine ox 98.2 1.6E-06 3.4E-11 85.0 5.1 41 8-48 1-41 (435)
293 PRK07395 L-aspartate oxidase; 98.2 1.1E-05 2.4E-10 80.9 11.2 39 5-44 7-45 (553)
294 PLN02568 polyamine oxidase 98.2 1.9E-06 4.1E-11 85.8 5.6 44 6-49 4-52 (539)
295 TIGR00562 proto_IX_ox protopor 98.2 1.9E-06 4.2E-11 85.2 5.1 42 7-48 2-47 (462)
296 PLN02576 protoporphyrinogen ox 98.2 2.3E-06 5E-11 85.4 5.6 45 5-49 10-55 (496)
297 TIGR01811 sdhA_Bsu succinate d 98.2 3.6E-05 7.9E-10 78.0 14.0 33 10-42 1-33 (603)
298 COG0562 Glf UDP-galactopyranos 98.2 2.8E-06 6E-11 75.6 5.1 43 7-49 1-43 (374)
299 PRK09077 L-aspartate oxidase; 98.1 6E-05 1.3E-09 75.6 14.6 43 1-44 1-44 (536)
300 PLN02676 polyamine oxidase 98.1 3.8E-06 8.2E-11 83.0 5.9 44 5-48 24-68 (487)
301 COG3349 Uncharacterized conser 98.1 3E-06 6.5E-11 80.9 4.9 41 8-48 1-41 (485)
302 PRK10262 thioredoxin reductase 98.1 3.1E-05 6.7E-10 72.6 11.5 98 7-148 146-250 (321)
303 PRK12416 protoporphyrinogen ox 98.1 3.3E-06 7.1E-11 83.5 5.1 41 8-48 2-48 (463)
304 TIGR02733 desat_CrtD C-3',4' d 98.1 4.2E-06 9E-11 83.4 5.3 42 8-49 2-43 (492)
305 COG2509 Uncharacterized FAD-de 98.1 4E-05 8.6E-10 71.8 11.0 58 85-144 172-230 (486)
306 TIGR01292 TRX_reduct thioredox 98.1 1.4E-05 3E-10 74.1 8.1 32 175-206 2-33 (300)
307 TIGR03378 glycerol3P_GlpB glyc 98.0 0.00031 6.7E-09 67.0 17.0 57 85-143 262-321 (419)
308 TIGR02734 crtI_fam phytoene de 98.0 4.2E-06 9.1E-11 83.6 4.6 38 10-47 1-38 (502)
309 TIGR02730 carot_isom carotene 98.0 5.8E-06 1.3E-10 82.3 5.3 41 8-48 1-41 (493)
310 KOG2404|consensus 98.0 2.6E-05 5.7E-10 69.4 8.6 40 8-47 10-49 (477)
311 TIGR02731 phytoene_desat phyto 98.0 7.3E-06 1.6E-10 80.8 5.4 40 9-48 1-40 (453)
312 TIGR02061 aprA adenosine phosp 98.0 2.5E-05 5.4E-10 78.9 9.1 33 9-41 1-37 (614)
313 TIGR03169 Nterm_to_SelD pyridi 98.0 7E-05 1.5E-09 71.6 11.7 91 7-142 145-241 (364)
314 TIGR03140 AhpF alkyl hydropero 97.9 8.4E-05 1.8E-09 74.3 11.9 95 7-149 352-453 (515)
315 PRK13800 putative oxidoreducta 97.9 2.4E-05 5.3E-10 83.1 8.3 35 7-41 13-47 (897)
316 KOG1298|consensus 97.9 0.0001 2.3E-09 67.4 10.8 36 5-40 43-78 (509)
317 PLN02529 lysine-specific histo 97.9 1.4E-05 3E-10 81.7 6.0 42 6-47 159-200 (738)
318 KOG1336|consensus 97.9 0.00013 2.9E-09 68.8 11.1 105 7-152 213-319 (478)
319 PLN02487 zeta-carotene desatur 97.8 2.4E-05 5.3E-10 78.1 5.6 41 7-47 75-115 (569)
320 PRK12837 3-ketosteroid-delta-1 97.8 2.7E-05 5.9E-10 77.7 5.9 43 1-44 1-43 (513)
321 TIGR02732 zeta_caro_desat caro 97.8 2.2E-05 4.8E-10 77.4 5.1 40 9-48 1-40 (474)
322 PLN02328 lysine-specific histo 97.8 2.8E-05 6.1E-10 80.0 5.7 42 6-47 237-278 (808)
323 KOG2844|consensus 97.8 0.00015 3.2E-09 70.9 10.0 60 82-144 183-243 (856)
324 PTZ00363 rab-GDP dissociation 97.8 2.9E-05 6.4E-10 75.2 5.1 44 6-49 3-46 (443)
325 PRK12834 putative FAD-binding 97.7 4E-05 8.6E-10 77.2 5.6 40 6-45 3-44 (549)
326 PF13434 K_oxygenase: L-lysine 97.7 0.00013 2.9E-09 68.4 8.7 128 6-142 189-339 (341)
327 PLN02612 phytoene desaturase 97.7 4.6E-05 1E-09 76.8 5.7 41 6-46 92-132 (567)
328 COG3573 Predicted oxidoreducta 97.7 0.00043 9.4E-09 62.2 10.9 40 6-45 4-45 (552)
329 KOG2853|consensus 97.7 0.00055 1.2E-08 61.8 11.3 35 7-41 86-124 (509)
330 PLN03000 amine oxidase 97.7 5.9E-05 1.3E-09 77.8 5.9 43 6-48 183-225 (881)
331 PRK15317 alkyl hydroperoxide r 97.7 0.00032 6.9E-09 70.2 11.0 94 7-148 351-451 (517)
332 PRK12770 putative glutamate sy 97.7 0.00023 5.1E-09 67.6 9.6 33 8-40 173-206 (352)
333 PRK11749 dihydropyrimidine deh 97.7 0.00055 1.2E-08 67.5 12.2 95 7-147 273-388 (457)
334 PRK12844 3-ketosteroid-delta-1 97.7 6.4E-05 1.4E-09 75.7 5.6 41 6-46 5-45 (557)
335 PRK12835 3-ketosteroid-delta-1 97.6 6.8E-05 1.5E-09 75.9 5.6 40 6-45 10-49 (584)
336 KOG2311|consensus 97.6 0.00027 5.9E-09 66.4 8.9 35 6-40 27-61 (679)
337 TIGR01316 gltA glutamate synth 97.6 0.00073 1.6E-08 66.3 12.6 34 7-40 272-305 (449)
338 TIGR03862 flavo_PP4765 unchara 97.6 0.00071 1.5E-08 63.9 11.8 61 84-148 84-145 (376)
339 COG2081 Predicted flavoprotein 97.6 0.00024 5.2E-09 65.9 8.0 138 174-317 4-166 (408)
340 TIGR02462 pyranose_ox pyranose 97.6 7.6E-05 1.6E-09 73.9 5.2 40 8-47 1-40 (544)
341 PLN02976 amine oxidase 97.6 8.6E-05 1.9E-09 79.5 5.5 44 6-49 692-735 (1713)
342 KOG1276|consensus 97.5 0.0001 2.2E-09 68.5 4.7 42 7-48 11-54 (491)
343 PRK12831 putative oxidoreducta 97.5 0.0011 2.4E-08 65.3 12.4 34 7-40 281-314 (464)
344 PF01593 Amino_oxidase: Flavin 97.5 0.00015 3.2E-09 70.9 6.4 41 104-144 225-265 (450)
345 KOG2852|consensus 97.5 0.00065 1.4E-08 59.9 9.1 38 7-44 10-53 (380)
346 PRK12810 gltD glutamate syntha 97.5 0.0014 3E-08 64.8 12.2 102 7-142 281-398 (471)
347 PF00732 GMC_oxred_N: GMC oxid 97.5 0.00011 2.3E-09 68.1 3.9 34 8-41 1-35 (296)
348 PRK04176 ribulose-1,5-biphosph 97.4 0.0011 2.3E-08 59.8 10.1 37 171-207 23-59 (257)
349 PLN02172 flavin-containing mon 97.4 0.00044 9.4E-09 67.8 8.1 91 7-152 204-294 (461)
350 TIGR00292 thiazole biosynthesi 97.4 0.00096 2.1E-08 59.9 9.6 36 172-207 20-55 (254)
351 PRK12779 putative bifunctional 97.4 0.00021 4.4E-09 76.0 5.9 35 172-206 305-339 (944)
352 PF06100 Strep_67kDa_ant: Stre 97.4 0.0064 1.4E-07 58.5 14.9 42 7-48 2-47 (500)
353 PRK09853 putative selenate red 97.4 0.00028 6.1E-09 74.2 6.2 37 171-207 537-573 (1019)
354 KOG2495|consensus 97.4 0.00045 9.7E-09 64.3 6.5 99 8-148 219-333 (491)
355 TIGR03143 AhpF_homolog putativ 97.4 0.0014 2.9E-08 66.3 10.7 95 7-148 143-248 (555)
356 COG1053 SdhA Succinate dehydro 97.4 0.00028 6.1E-09 70.4 5.6 41 3-43 2-42 (562)
357 PRK01438 murD UDP-N-acetylmura 97.3 0.00077 1.7E-08 67.0 8.7 34 7-40 16-49 (480)
358 COG3075 GlpB Anaerobic glycero 97.3 0.00026 5.7E-09 63.5 4.7 33 8-40 3-35 (421)
359 KOG0405|consensus 97.3 0.00089 1.9E-08 60.6 7.9 104 5-150 187-291 (478)
360 PRK07236 hypothetical protein; 97.3 0.00084 1.8E-08 64.7 8.4 36 172-207 5-40 (386)
361 PRK02106 choline dehydrogenase 97.3 0.00028 6.1E-09 71.4 5.3 36 5-40 3-39 (560)
362 KOG2665|consensus 97.3 0.002 4.4E-08 57.6 9.7 39 5-43 46-86 (453)
363 TIGR01318 gltD_gamma_fam gluta 97.3 0.0077 1.7E-07 59.5 14.8 35 7-41 282-317 (467)
364 KOG3855|consensus 97.3 0.0051 1.1E-07 57.3 12.1 38 6-43 35-78 (481)
365 TIGR01789 lycopene_cycl lycope 97.2 0.00078 1.7E-08 64.3 7.2 128 176-318 2-138 (370)
366 PRK12778 putative bifunctional 97.2 0.003 6.6E-08 66.3 12.1 34 7-40 570-604 (752)
367 PF07992 Pyr_redox_2: Pyridine 97.2 7.3E-05 1.6E-09 64.8 -0.1 32 175-206 1-32 (201)
368 TIGR01372 soxA sarcosine oxida 97.2 0.0036 7.8E-08 67.5 12.2 92 7-148 317-413 (985)
369 KOG3923|consensus 97.2 0.0016 3.4E-08 57.8 7.7 34 7-40 3-43 (342)
370 PF13454 NAD_binding_9: FAD-NA 97.1 0.00073 1.6E-08 55.9 5.1 31 177-207 1-36 (156)
371 COG1635 THI4 Ribulose 1,5-bisp 97.1 0.0057 1.2E-07 52.1 10.0 40 167-206 24-63 (262)
372 KOG1346|consensus 97.1 0.0017 3.7E-08 60.2 7.5 101 6-148 346-451 (659)
373 PF13738 Pyr_redox_3: Pyridine 97.1 0.0021 4.5E-08 55.7 7.9 30 177-206 1-31 (203)
374 PRK12814 putative NADPH-depend 97.1 0.016 3.4E-07 59.8 15.3 34 7-40 323-357 (652)
375 PF01134 GIDA: Glucose inhibit 97.1 0.00024 5.1E-09 67.0 1.8 31 175-205 1-31 (392)
376 PRK06567 putative bifunctional 97.1 0.0014 2.9E-08 68.6 7.3 36 171-206 381-416 (1028)
377 PLN02852 ferredoxin-NADP+ redu 97.1 0.00073 1.6E-08 66.3 5.1 36 172-207 25-62 (491)
378 PLN02661 Putative thiazole syn 97.1 0.007 1.5E-07 56.4 11.1 45 162-206 81-126 (357)
379 COG1206 Gid NAD(FAD)-utilizing 97.0 0.0013 2.8E-08 59.2 5.3 35 8-42 4-38 (439)
380 COG2072 TrkA Predicted flavopr 97.0 0.0048 1E-07 60.3 9.6 34 173-206 8-42 (443)
381 KOG4254|consensus 96.9 0.00084 1.8E-08 62.9 3.6 41 6-46 13-53 (561)
382 COG2303 BetA Choline dehydroge 96.9 0.0011 2.4E-08 66.4 4.7 37 4-40 4-40 (542)
383 TIGR03315 Se_ygfK putative sel 96.8 0.0021 4.5E-08 68.2 6.3 35 172-206 536-570 (1012)
384 PLN02463 lycopene beta cyclase 96.8 0.0069 1.5E-07 59.1 9.1 33 175-207 30-62 (447)
385 PRK12769 putative oxidoreducta 96.8 0.017 3.7E-07 59.7 12.4 34 7-40 468-502 (654)
386 TIGR01317 GOGAT_sm_gam glutama 96.8 0.02 4.3E-07 56.9 12.3 35 7-41 283-318 (485)
387 PRK06847 hypothetical protein; 96.7 0.0025 5.5E-08 61.1 5.6 35 173-207 4-38 (375)
388 COG1251 NirB NAD(P)H-nitrite r 96.7 0.0038 8.3E-08 62.3 6.7 100 8-148 146-245 (793)
389 PRK01438 murD UDP-N-acetylmura 96.7 0.0025 5.5E-08 63.3 5.3 36 171-206 14-49 (480)
390 PRK12775 putative trifunctiona 96.7 0.0014 3.1E-08 70.3 3.7 35 172-206 429-463 (1006)
391 PRK06753 hypothetical protein; 96.6 0.0097 2.1E-07 57.0 8.8 33 175-207 2-34 (373)
392 COG3486 IucD Lysine/ornithine 96.6 0.067 1.5E-06 50.1 13.5 46 104-151 294-345 (436)
393 KOG1399|consensus 96.6 0.026 5.7E-07 54.7 11.4 34 173-206 6-39 (448)
394 TIGR01810 betA choline dehydro 96.6 0.002 4.2E-08 64.9 3.9 33 9-41 1-34 (532)
395 COG0492 TrxB Thioredoxin reduc 96.5 0.025 5.4E-07 52.2 10.5 94 7-148 143-240 (305)
396 PRK12809 putative oxidoreducta 96.5 0.072 1.6E-06 54.9 15.0 35 7-41 451-486 (639)
397 PF03486 HI0933_like: HI0933-l 96.5 0.0042 9.1E-08 59.8 5.4 33 175-207 2-34 (409)
398 KOG2755|consensus 96.5 0.0052 1.1E-07 53.6 5.3 27 294-320 80-106 (334)
399 PRK05192 tRNA uridine 5-carbox 96.4 0.0098 2.1E-07 59.6 7.7 32 175-206 6-37 (618)
400 PTZ00188 adrenodoxin reductase 96.4 0.0092 2E-07 58.0 6.8 36 172-207 38-74 (506)
401 COG4529 Uncharacterized protei 96.3 0.016 3.4E-07 55.5 8.0 33 174-206 2-37 (474)
402 PLN02785 Protein HOTHEAD 96.3 0.0049 1.1E-07 62.4 4.8 35 6-41 54-88 (587)
403 PRK05329 anaerobic glycerol-3- 96.3 0.046 1E-06 52.9 11.1 91 11-143 219-317 (422)
404 PF00743 FMO-like: Flavin-bind 96.2 0.013 2.9E-07 58.4 7.4 34 7-40 183-216 (531)
405 KOG0042|consensus 96.2 0.0024 5.2E-08 61.3 1.8 45 5-49 65-109 (680)
406 TIGR01790 carotene-cycl lycope 96.1 0.017 3.8E-07 55.6 7.7 32 176-207 2-33 (388)
407 KOG2960|consensus 96.1 0.0014 3.1E-08 55.0 0.0 42 8-49 77-121 (328)
408 TIGR03197 MnmC_Cterm tRNA U-34 96.1 0.019 4E-07 55.3 7.6 60 84-146 133-192 (381)
409 COG0654 UbiH 2-polyprenyl-6-me 96.1 0.022 4.8E-07 54.9 8.1 33 174-206 3-35 (387)
410 TIGR03219 salicylate_mono sali 96.1 0.029 6.3E-07 54.6 9.0 33 175-207 2-35 (414)
411 KOG3851|consensus 96.1 0.0058 1.3E-07 54.9 3.6 36 288-323 113-150 (446)
412 PRK05868 hypothetical protein; 96.0 0.029 6.3E-07 53.7 8.6 34 174-207 2-35 (372)
413 PF01210 NAD_Gly3P_dh_N: NAD-d 95.9 0.01 2.2E-07 49.1 4.1 32 9-40 1-32 (157)
414 PF05834 Lycopene_cycl: Lycope 95.9 0.006 1.3E-07 58.4 3.1 32 176-207 2-35 (374)
415 PRK09897 hypothetical protein; 95.8 0.034 7.3E-07 55.5 8.0 33 174-206 2-36 (534)
416 KOG2614|consensus 95.7 0.07 1.5E-06 50.1 9.0 34 174-207 3-36 (420)
417 TIGR02032 GG-red-SF geranylger 95.7 0.074 1.6E-06 48.8 9.4 33 175-207 2-34 (295)
418 PRK13984 putative oxidoreducta 95.6 0.1 2.2E-06 53.6 11.1 31 7-37 418-454 (604)
419 TIGR00136 gidA glucose-inhibit 95.6 0.072 1.6E-06 53.5 9.5 32 175-206 2-33 (617)
420 PF03721 UDPG_MGDP_dh_N: UDP-g 95.6 0.012 2.6E-07 50.0 3.6 34 8-41 1-34 (185)
421 PRK06834 hypothetical protein; 95.6 0.046 9.9E-07 54.4 8.1 34 174-207 4-37 (488)
422 cd01080 NAD_bind_m-THF_DH_Cycl 95.6 0.047 1E-06 45.5 6.8 36 170-205 41-77 (168)
423 PF13241 NAD_binding_7: Putati 95.5 0.012 2.6E-07 44.7 2.9 36 170-205 4-39 (103)
424 PRK10157 putative oxidoreducta 95.5 0.023 5E-07 55.5 5.5 33 175-207 7-39 (428)
425 PRK07819 3-hydroxybutyryl-CoA 95.5 0.019 4.2E-07 52.6 4.6 36 6-41 4-39 (286)
426 PF13450 NAD_binding_8: NAD(P) 95.5 0.013 2.9E-07 40.6 2.7 30 178-207 1-30 (68)
427 PRK05562 precorrin-2 dehydroge 95.4 0.035 7.7E-07 48.3 5.8 35 171-205 23-57 (223)
428 COG0569 TrkA K+ transport syst 95.3 0.023 4.9E-07 50.1 4.4 34 8-41 1-34 (225)
429 PF02737 3HCDH_N: 3-hydroxyacy 95.3 0.024 5.2E-07 48.0 4.3 32 9-40 1-32 (180)
430 PRK07066 3-hydroxybutyryl-CoA 95.3 0.03 6.5E-07 52.0 5.2 36 6-41 6-41 (321)
431 PRK08850 2-octaprenyl-6-methox 95.2 0.034 7.4E-07 53.9 5.8 32 174-205 5-36 (405)
432 COG1004 Ugd Predicted UDP-gluc 95.2 0.022 4.8E-07 53.1 4.1 33 8-40 1-33 (414)
433 KOG2311|consensus 95.2 0.15 3.3E-06 48.7 9.5 31 175-205 30-60 (679)
434 PRK14192 bifunctional 5,10-met 95.2 0.057 1.2E-06 49.2 6.7 36 170-205 156-192 (283)
435 PRK02705 murD UDP-N-acetylmura 95.2 0.024 5.1E-07 56.0 4.5 33 9-41 2-34 (459)
436 PRK07333 2-octaprenyl-6-methox 95.2 0.031 6.7E-07 54.1 5.3 33 175-207 3-37 (403)
437 KOG0399|consensus 95.2 0.033 7.1E-07 58.3 5.4 37 171-207 1783-1819(2142)
438 PLN02697 lycopene epsilon cycl 95.2 0.031 6.8E-07 55.7 5.3 31 175-205 110-140 (529)
439 PRK12771 putative glutamate sy 95.1 0.2 4.4E-06 50.9 11.1 34 7-40 267-301 (564)
440 TIGR02352 thiamin_ThiO glycine 95.1 0.092 2E-06 49.4 8.1 62 82-146 133-195 (337)
441 KOG1238|consensus 95.1 0.025 5.3E-07 56.1 4.1 37 6-42 56-93 (623)
442 PF00996 GDI: GDP dissociation 95.1 0.03 6.4E-07 54.1 4.6 44 6-49 3-46 (438)
443 COG0445 GidA Flavin-dependent 95.0 0.086 1.9E-06 51.3 7.3 32 175-206 6-37 (621)
444 TIGR01470 cysG_Nterm siroheme 95.0 0.046 1E-06 47.3 5.1 35 6-40 8-42 (205)
445 PRK06249 2-dehydropantoate 2-r 94.9 0.043 9.3E-07 51.2 5.2 35 6-40 4-38 (313)
446 PF13241 NAD_binding_7: Putati 94.8 0.027 5.8E-07 42.8 3.0 34 6-39 6-39 (103)
447 COG0644 FixC Dehydrogenases (f 94.8 0.037 8E-07 53.5 4.6 37 175-211 5-41 (396)
448 PRK06129 3-hydroxyacyl-CoA deh 94.8 0.038 8.2E-07 51.4 4.5 34 8-41 3-36 (308)
449 PF01262 AlaDh_PNT_C: Alanine 94.6 0.05 1.1E-06 45.5 4.5 35 6-40 19-53 (168)
450 PRK14175 bifunctional 5,10-met 94.6 0.13 2.7E-06 46.7 7.2 37 170-206 155-192 (286)
451 PRK05335 tRNA (uracil-5-)-meth 94.6 0.032 7E-07 53.4 3.6 35 174-208 3-37 (436)
452 PF02558 ApbA: Ketopantoate re 94.6 0.051 1.1E-06 44.5 4.4 31 10-40 1-31 (151)
453 PRK06719 precorrin-2 dehydroge 94.6 0.039 8.4E-07 45.5 3.6 34 170-203 10-43 (157)
454 PRK08268 3-hydroxy-acyl-CoA de 94.6 0.057 1.2E-06 53.7 5.4 41 1-41 1-41 (507)
455 PRK14106 murD UDP-N-acetylmura 94.6 0.053 1.2E-06 53.4 5.2 35 6-40 4-38 (450)
456 COG0493 GltD NADPH-dependent g 94.6 0.051 1.1E-06 53.0 4.9 37 170-206 120-156 (457)
457 PRK06719 precorrin-2 dehydroge 94.5 0.066 1.4E-06 44.1 4.8 33 6-38 12-44 (157)
458 PRK04148 hypothetical protein; 94.5 0.038 8.2E-07 43.8 3.1 34 7-41 17-50 (134)
459 PF00670 AdoHcyase_NAD: S-aden 94.4 0.058 1.2E-06 44.2 4.0 37 170-206 20-56 (162)
460 COG2910 Putative NADH-flavin r 94.4 0.51 1.1E-05 39.3 9.4 33 175-207 2-35 (211)
461 COG1148 HdrA Heterodisulfide r 94.2 0.045 9.7E-07 52.3 3.6 35 173-207 124-158 (622)
462 PRK07530 3-hydroxybutyryl-CoA 94.2 0.075 1.6E-06 49.0 5.1 34 7-40 4-37 (292)
463 TIGR01470 cysG_Nterm siroheme 94.2 0.049 1.1E-06 47.1 3.6 36 170-205 6-41 (205)
464 PF01488 Shikimate_DH: Shikima 94.2 0.11 2.3E-06 41.8 5.3 35 6-40 11-46 (135)
465 PRK06718 precorrin-2 dehydroge 94.2 0.087 1.9E-06 45.5 5.0 34 6-39 9-42 (202)
466 PRK06130 3-hydroxybutyryl-CoA 94.2 0.072 1.6E-06 49.6 4.9 35 6-40 3-37 (311)
467 PF00899 ThiF: ThiF family; I 94.1 0.057 1.2E-06 43.3 3.7 34 7-40 2-36 (135)
468 KOG4716|consensus 94.1 0.15 3.2E-06 46.5 6.4 95 7-142 198-298 (503)
469 TIGR00137 gid_trmFO tRNA:m(5)U 94.1 0.047 1E-06 52.6 3.5 33 175-207 2-34 (433)
470 PRK06718 precorrin-2 dehydroge 94.0 0.057 1.2E-06 46.6 3.6 36 170-205 7-42 (202)
471 PRK14106 murD UDP-N-acetylmura 94.0 0.15 3.2E-06 50.3 6.9 36 171-206 3-38 (450)
472 PRK08293 3-hydroxybutyryl-CoA 93.9 0.077 1.7E-06 48.8 4.6 33 8-40 4-36 (287)
473 PRK09260 3-hydroxybutyryl-CoA 93.9 0.076 1.6E-06 48.8 4.4 34 8-41 2-35 (288)
474 PRK11064 wecC UDP-N-acetyl-D-m 93.9 0.072 1.6E-06 51.7 4.4 34 8-41 4-37 (415)
475 PRK05808 3-hydroxybutyryl-CoA 93.8 0.086 1.9E-06 48.3 4.6 34 8-41 4-37 (282)
476 PRK14618 NAD(P)H-dependent gly 93.8 0.1 2.2E-06 49.1 5.1 35 6-40 3-37 (328)
477 PLN02545 3-hydroxybutyryl-CoA 93.7 0.11 2.3E-06 48.1 5.1 35 6-40 3-37 (295)
478 PRK05708 2-dehydropantoate 2-r 93.7 0.1 2.2E-06 48.4 4.9 33 8-40 3-35 (305)
479 TIGR00518 alaDH alanine dehydr 93.6 0.1 2.2E-06 49.7 4.8 35 6-40 166-200 (370)
480 PRK06035 3-hydroxyacyl-CoA deh 93.6 0.094 2E-06 48.3 4.4 34 8-41 4-37 (291)
481 PRK00066 ldh L-lactate dehydro 93.4 0.15 3.2E-06 47.4 5.5 37 4-40 3-41 (315)
482 PF03446 NAD_binding_2: NAD bi 93.4 0.12 2.5E-06 43.1 4.3 34 7-40 1-34 (163)
483 PF01488 Shikimate_DH: Shikima 93.4 0.11 2.4E-06 41.7 4.0 37 170-206 9-46 (135)
484 PRK06522 2-dehydropantoate 2-r 93.4 0.11 2.3E-06 48.2 4.5 32 9-40 2-33 (304)
485 PTZ00082 L-lactate dehydrogena 93.3 0.16 3.4E-06 47.4 5.5 40 1-41 1-41 (321)
486 PRK12921 2-dehydropantoate 2-r 93.3 0.11 2.4E-06 48.1 4.6 30 9-38 2-31 (305)
487 PRK09424 pntA NAD(P) transhydr 93.3 0.1 2.2E-06 51.5 4.4 35 6-40 164-198 (509)
488 PRK08229 2-dehydropantoate 2-r 93.2 0.13 2.7E-06 48.7 4.8 32 8-39 3-34 (341)
489 TIGR02354 thiF_fam2 thiamine b 93.0 0.16 3.5E-06 43.7 4.7 33 7-39 21-54 (200)
490 PF13478 XdhC_C: XdhC Rossmann 93.0 0.11 2.4E-06 41.6 3.4 32 10-41 1-32 (136)
491 cd05212 NAD_bind_m-THF_DH_Cycl 92.8 0.51 1.1E-05 37.9 7.0 37 170-206 25-62 (140)
492 KOG4405|consensus 92.8 0.14 3E-06 47.9 4.1 45 5-49 6-50 (547)
493 PRK00094 gpsA NAD(P)H-dependen 92.8 0.16 3.4E-06 47.7 4.7 33 8-40 2-34 (325)
494 cd00401 AdoHcyase S-adenosyl-L 92.7 0.15 3.3E-06 48.9 4.5 34 7-40 202-235 (413)
495 PRK14191 bifunctional 5,10-met 92.7 0.43 9.4E-06 43.2 7.1 36 170-205 154-190 (285)
496 PRK01368 murD UDP-N-acetylmura 92.6 0.17 3.7E-06 49.8 4.9 35 4-39 3-37 (454)
497 PRK12409 D-amino acid dehydrog 92.6 0.12 2.5E-06 50.3 3.8 33 174-206 2-34 (410)
498 TIGR01373 soxB sarcosine oxida 92.6 0.16 3.5E-06 49.3 4.7 49 158-206 15-65 (407)
499 PLN02353 probable UDP-glucose 92.6 0.15 3.2E-06 50.1 4.4 34 8-41 2-37 (473)
500 PRK14189 bifunctional 5,10-met 92.6 0.38 8.2E-06 43.6 6.6 36 170-205 155-191 (285)
No 1
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=3.6e-75 Score=568.18 Aligned_cols=414 Identities=33% Similarity=0.570 Sum_probs=274.0
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCC----CCccccceEeecCCCcccCCCCCCCCCCCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQAS----CGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
++|+|||||++||++|+.|.+.|++++|||+++.+||+|.+... .+++|+++..++++.++.|+|+|+|++++.|+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 68999999999999999999999999999999999999987542 45789999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC-----CeEEEEEccCc---EEEeCEEEEccCCCCCCCCCC--CCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-----DIWEVELSNGK---KKKYDFIAVCNGAQRVARYPN--YSG 153 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~-----~~~~v~~~~g~---~~~~d~vIvAtG~~s~p~~p~--i~g 153 (433)
++.++.+|++.|++++++..+|+|+++|++|++.+ ++|.|+++++. +..||+||+|||.++.|++|. ++|
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G 161 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPG 161 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CT
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhh
Confidence 99999999999999999999999999999999862 58999987532 357999999999999999995 999
Q ss_pred --CCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccC-CCCChhHHhHh-----
Q psy2398 154 --YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFI-DGKPTPQWMLQ----- 225 (433)
Q Consensus 154 --~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~-~~~~~~~~~~~----- 225 (433)
.|.|.++||.+|++++.++||+|+|||+|+||+|+|.+|+..+++|+++.|++.|++||.. .|.|.|.....
T Consensus 162 ~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~ 241 (531)
T PF00743_consen 162 LEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSF 241 (531)
T ss_dssp GGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---------------------------
T ss_pred hhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccccccccccccccccccccccc
Confidence 8999999999999999999999999999999999999999999999999999999999986 58888865432
Q ss_pred ----hchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCeEEecC
Q psy2398 226 ----LGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVD 301 (433)
Q Consensus 226 ----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~~d 301 (433)
+|..+.+ ++.+..++. ..+...+++ .|.+.....++++++++.+.+.+|+|.+++.|+++++++|+|+|
T Consensus 242 l~~~lp~~~~~-----~~~~~~l~~-~~~~~~~gl-~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~~~~v~F~D 314 (531)
T PF00743_consen 242 LQKNLPESLSN-----WLLEKKLNK-RFDHENYGL-KPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKRFTENSVIFED 314 (531)
T ss_dssp ----------------------------------------------------------------EE-EEEE-SSEEEETT
T ss_pred ccccccccccc-----ccccccccc-ccccccccc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence 3333333 333332211 124456666 67777788889999999999999999999999999999999999
Q ss_pred Ccee-eccEEEEccCCCCCCCCCCcccccccCCccccccccccCC--CCcEEEEccccccCChhhHHHHHHHHHHHHHhh
Q psy2398 302 DTHI-EVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRN--LDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 302 G~~~-~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g 378 (433)
|+++ ++|.||+||||+.++|||+.+.+...++.+.||+++++++ .|+|+|||.+.+.++.++++|+||||+|+.++|
T Consensus 315 Gs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQArw~a~v~sG 394 (531)
T PF00743_consen 315 GSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQARWAARVFSG 394 (531)
T ss_dssp SEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSSS-HHHHHHHHHHHHHHHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9985 6999999999999999999887776677789999999885 589999999988778899999999999999999
Q ss_pred hhcCCCcchhHHHHhhcCCC--ccCCCccccCCCceeeeeHHHHHHHHHHhhcccc
Q psy2398 379 FIRKSKGYLKFLNAKKNDNP--DLGQDYFIDSHRHLWEVDFWKFIKCARMYRDMLD 432 (433)
Q Consensus 379 ~~~lp~~~~~~~~m~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 432 (433)
+.+||+. ++|.+++++ +....+|...++|..++||..|+|+||++|||+-
T Consensus 395 ~~~LPs~----~~M~~~i~~~~~~~~~~~~~~~~~~~~~d~~~y~deLA~~iG~~P 446 (531)
T PF00743_consen 395 RVKLPSK----EEMMEEIEEEQEWRAKRFGFSPRHTIQVDYIDYMDELAREIGCKP 446 (531)
T ss_dssp SS----H----HHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHTTS-------
T ss_pred ccccccc----ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999998 999998654 2233356666778888999999999999999963
No 2
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=3.4e-59 Score=450.73 Aligned_cols=359 Identities=23% Similarity=0.398 Sum_probs=294.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCC---------------CCccccceEeecCCCcccC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQAS---------------CGRVYPSLHLISPKFNTQV 70 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~---------------~~~~~~~~~~~~~~~~~~~ 70 (433)
..++|+|||||++||+||++|++.|++|+|||+++.+||+|.+... ++++|.+++.+.++.++.|
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 3589999999999999999999999999999999999999988532 3678999999999999999
Q ss_pred CCCCCCCC-------CCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC--c--EEEeCEEEEc
Q psy2398 71 PDYPMPDN-------YPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--K--KKKYDFIAVC 139 (433)
Q Consensus 71 ~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g--~--~~~~d~vIvA 139 (433)
+++|++.. .+.|+++.++.+|++++++++++..+|+|+++|+.|++.++.|.|++.++ . +..||+||+|
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvA 168 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVC 168 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEe
Confidence 99998653 35689999999999999999999888999999999999888999998643 2 3579999999
Q ss_pred cCCCCCCCCCCCCC--CCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCC
Q psy2398 140 NGAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGK 217 (433)
Q Consensus 140 tG~~s~p~~p~i~g--~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~ 217 (433)
||+++.|++|+++| .|.|..+|++.++.++.+++|+|+|||+|.||+|+|.+|+..+++|++++|++...
T Consensus 169 tG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~-------- 240 (461)
T PLN02172 169 NGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESD-------- 240 (461)
T ss_pred ccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecccc--------
Confidence 99999999999999 79999999999999999999999999999999999999999999999999875210
Q ss_pred ChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee-CCe
Q psy2398 218 PTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN-GNI 296 (433)
Q Consensus 218 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~-~~~ 296 (433)
.+.. ++.+. .++.....|..+. +..
T Consensus 241 -----------~~~~-----------------------~~~~~--------------------~~v~~~~~I~~~~~~g~ 266 (461)
T PLN02172 241 -----------TYEK-----------------------LPVPQ--------------------NNLWMHSEIDTAHEDGS 266 (461)
T ss_pred -----------cccc-----------------------CcCCC--------------------CceEECCcccceecCCe
Confidence 0000 00000 1233334444443 456
Q ss_pred EEecCCceeeccEEEEccCCCCCCCCCCccc-ccccCCcc-ccccccccCCC-CcEEEEccccccCChhhHHHHHHHHHH
Q psy2398 297 VHFVDDTHIEVDTIIYATGYNRHFPFIDKEK-LEWKLGIP-DLFIHIAPRNL-DNIFFFGFVNAAAGLGDGLRLQGQFIR 373 (433)
Q Consensus 297 v~~~dG~~~~~D~vi~atG~~~~~~~l~~~~-~~~~~~~~-~~~~~~~~~~~-p~i~~iG~~~~~~~~~~~a~~qa~~~a 373 (433)
|+|+||+++++|.||+||||++++|||+... +..+++.+ +||++++++.. |+|+|||.+. ....++++|+||+|+|
T Consensus 267 V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~-~~~~f~~~E~Qa~~~a 345 (461)
T PLN02172 267 IVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPA-MGIQFVMFEIQSKWVA 345 (461)
T ss_pred EEECCCCCccCCEEEECCcCCccccccCcccceeeCCCcchhhHHhhcCCCCCCcEEEEeccc-cccCchhHHHHHHHHH
Confidence 9999999999999999999999999998533 44455555 79999999975 9999999874 4577899999999999
Q ss_pred HHHhhhhcCCCcchhHHHHhhcCCCccC-CCccccCCC--ceeeeeHHHHHHHHHHhhccc
Q psy2398 374 SYIQAFIRKSKGYLKFLNAKKNDNPDLG-QDYFIDSHR--HLWEVDFWKFIKCARMYRDML 431 (433)
Q Consensus 374 ~~i~g~~~lp~~~~~~~~m~~~~~~~~~-~~~~~~~~~--~~~~~~~~~y~~~~~~~~~~~ 431 (433)
++|+|+.+||+. ++|+++++.... +..+...++ |...-.++.|+|+||+++|+.
T Consensus 346 ~v~sG~~~LPs~----~~m~~~~~~~~~~~~~~g~~~r~~h~~~~~~~~y~~~la~~~g~~ 402 (461)
T PLN02172 346 AVLSGRVTLPSE----DKMMEDINAWYASLEALGIPKRYTHKLGKIQSEYLNWIAEECGCP 402 (461)
T ss_pred HHHcCCCCCcCH----HHHHHHHHHHHHHHHhcCCCCceeEEcCccHHHHHHHHHHHhCCC
Confidence 999999999998 999988643111 111222233 433335789999999999986
No 3
>KOG1399|consensus
Probab=100.00 E-value=2.8e-50 Score=380.65 Aligned_cols=356 Identities=28% Similarity=0.476 Sum_probs=292.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCC----CCccccceEeecCCCcccCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQAS----CGRVYPSLHLISPKFNTQVPDYPMPDNYPV 81 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (433)
..++|+|||||+|||++|++|.+.|++++||||.+++||+|.+... ++++|+++.++.++.++.|+++|+++..+.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 3579999999999999999999999999999999999999999865 458899999999999999999999999665
Q ss_pred -CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC-CeEEEEEccC----cEEEeCEEEEccCCCCCCCCCCCCC--
Q psy2398 82 -YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVELSNG----KKKKYDFIAVCNGAQRVARYPNYSG-- 153 (433)
Q Consensus 82 -~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~-~~~~v~~~~g----~~~~~d~vIvAtG~~s~p~~p~i~g-- 153 (433)
++++.++.+||++||+++++..+++|+++|..++... +.|.|.+.+. ...-||.|++|||++..|++|.++|
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~ 164 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPG 164 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCc
Confidence 4888999999999999999999999999999999887 7999998764 3577999999999996799999988
Q ss_pred --CCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC-ceeecccCCCCChhHHhHhhchhh
Q psy2398 154 --YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG-YHYYPKFIDGKPTPQWMLQLGNKF 230 (433)
Q Consensus 154 --~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~-~~~~p~~~~~~~~~~~~~~~p~~~ 230 (433)
.|.|.++||++|+.++.|++|+|+|||.|+||+|++.+++..+++|+++++.+ ....++ ..+
T Consensus 165 ~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~~---------------~~~ 229 (448)
T KOG1399|consen 165 IESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPP---------------EIL 229 (448)
T ss_pred hhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeeeccccccccc---------------cee
Confidence 89999999999999999999999999999999999999999999999987610 111110 000
Q ss_pred cCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCeEE-ecCCceeeccE
Q psy2398 231 SSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVH-FVDDTHIEVDT 309 (433)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~-~~dG~~~~~D~ 309 (433)
.. ++.....|+++++.+.. +++|....+|.
T Consensus 230 ------------------------------------------------~~-~~~~~~~i~~~~e~~~~~~~~~~~~~~D~ 260 (448)
T KOG1399|consen 230 ------------------------------------------------GE-NLWQVPSIKSFTEDGSVFEKGGPVERVDR 260 (448)
T ss_pred ------------------------------------------------ec-ceEEccccccccCcceEEEcCceeEEeee
Confidence 11 33333348888888755 55666788999
Q ss_pred EEEccCCCCCCCCCCcccc--cccCCccccccccccCCC-CcEEEEccccccCChhhHHHHHHHHHHHHHhhhhcCCCcc
Q psy2398 310 IIYATGYNRHFPFIDKEKL--EWKLGIPDLFIHIAPRNL-DNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGY 386 (433)
Q Consensus 310 vi~atG~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~-p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~~~lp~~~ 386 (433)
||+||||...+|||+.... ..+....++|+.++++.. |++.++|...-. ..+++.|.|++|+++.+.|+.++|+.
T Consensus 261 ii~ctgy~y~fPfl~~~~~~~~~~~~~~pl~k~~~p~~~~~~~~~~~l~~~~-~~f~~~e~Q~r~~~~v~~G~~~lps~- 338 (448)
T KOG1399|consen 261 IIFCTGYKYKFPFLETLGLGTVRDNIVGPLYKKVFPPALAPGLSLAGLPLIQ-IPFPMFELQARWVAAVLEGRLKLPSK- 338 (448)
T ss_pred EEEeeeeEeecceeccCCceeeccCcccchheeccchhhCccccccccCeee-EeecceehhhhhhHhhhcCCCcCCCH-
Confidence 9999999999999997653 224445789999888764 555676654322 56789999999999999999999998
Q ss_pred hhHHHHhhcCCCcc--CCCccccCCCceeeee---HHHHHHHHHHhhcc
Q psy2398 387 LKFLNAKKNDNPDL--GQDYFIDSHRHLWEVD---FWKFIKCARMYRDM 430 (433)
Q Consensus 387 ~~~~~m~~~~~~~~--~~~~~~~~~~~~~~~~---~~~y~~~~~~~~~~ 430 (433)
++|..+.+..+ .+..+..+.+++.+.+ ...|...++...|+
T Consensus 339 ---~~m~~d~~~~~~~~~~~~~~~~~~t~~~~~~~l~~y~~~~~~~~g~ 384 (448)
T KOG1399|consen 339 ---DQMLEDGQEKYEKLDAVGLATGRHTHVPDYDELAEYINWFADLCGF 384 (448)
T ss_pred ---HHhhhhhhhhhhhhhhhcccccccccccchHHHHHHhhhhhhhcCC
Confidence 88888865533 3335666677766654 35687777777665
No 4
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-41 Score=324.76 Aligned_cols=374 Identities=24% Similarity=0.350 Sum_probs=283.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCC-eEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNIN-YDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~-v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
..++||+|||||++||++|.+|++.|.+ ++||||++.+||+|.++ +|+++++++++....|+.+|++ +...++
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~-----ry~~l~~~~p~~~~~~~~~p~~-~~~~~~ 79 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYN-----RYPGLRLDSPKWLLGFPFLPFR-WDEAFA 79 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhc-----cCCceEECCchheeccCCCccC-CcccCC
Confidence 4568999999999999999999999998 99999999999999997 7999999999999999999987 455677
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe--CCeEEEEEccCcEE--EeCEEEEccCCCCCCCCCCCCC--CCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY--EDIWEVELSNGKKK--KYDFIAVCNGAQRVARYPNYSG--YFSG 157 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~--~~~~~v~~~~g~~~--~~d~vIvAtG~~s~p~~p~i~g--~~~g 157 (433)
....+.+|+.++++++++..++.+++.|+.++++ ++.|+|+++++... .||+||+|||.++.|++|+|+| .|.|
T Consensus 80 ~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g 159 (443)
T COG2072 80 PFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKG 159 (443)
T ss_pred CcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCc
Confidence 7777999999999999999999999999998887 56999999987654 5999999999999999999999 9999
Q ss_pred ceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHh---hchhhcCch
Q psy2398 158 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQ---LGNKFSSKE 234 (433)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~---~p~~~~~~~ 234 (433)
.++||.++++..+++||+|+|||+|+||+|+|.+|++.+++||++.|++.+++|....+.+...+... +|.......
T Consensus 160 ~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (443)
T COG2072 160 RILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPLLGEEVGGRLALRRALPAGWALRR 239 (443)
T ss_pred eEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCceecccccccchHHHHHHhhhCccceehhh
Confidence 99999999999999999999999999999999999999999999999999999988766554432221 222111100
Q ss_pred -------------------HHHHHHHHHHHHhcCCCCcC---CCCCCCCCCCCCCCccChhhhhcccCCCeeecC-Ccee
Q psy2398 235 -------------------ETMAYIKQVFKLAGFDGVDY---GLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD-DIKN 291 (433)
Q Consensus 235 -------------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~v~~ 291 (433)
............+....... ....|.....+.+...+..+......+.+.+.+ .+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~~ 319 (443)
T COG2072 240 GRVLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDLGPDYAPGDGRLVPDGDLFEAGASGDVEVVTEIIDR 319 (443)
T ss_pred hhhhhhhhhhhcccccCCCchHHHHHhhhhhhhccccccChHhhcCCCCCccccccccccchhhhhhhcccceeeccccc
Confidence 00000000000111111111 122344445555566677777788888887654 4555
Q ss_pred eeCCeEEecCCceeeccEEEEccCCCC-CCCCCCcccc--cccCCccccccccccCCCCcEEEEccccccCC---hhhHH
Q psy2398 292 LNGNIVHFVDDTHIEVDTIIYATGYNR-HFPFIDKEKL--EWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAG---LGDGL 365 (433)
Q Consensus 292 ~~~~~v~~~dG~~~~~D~vi~atG~~~-~~~~l~~~~~--~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~---~~~~a 365 (433)
+....+..++|+.++.|.++.+||+.. .+..++.... .+.......|....-.+.||++.++....... ....+
T Consensus 320 ~~~~~~~~~~~~~~e~d~i~~~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~pn~~~~~~~~~~~~~~~~~~~~ 399 (443)
T COG2072 320 FTEGGILLDSGREEEADVIITATGLDANDLSGAAGGYGGDPWDKDAPLAYKGLALSGGPNLFLIGGPTKASGGLKAALRA 399 (443)
T ss_pred cCCcceecCCCccccceEEEecCCCchhheeeeccccccccccccccceeccccccCCCceEEecCccCCcccchhHHhh
Confidence 566677777777799999999999998 4444442221 22334556777777888999999998875432 23346
Q ss_pred HHHHHHHHHHHhhhhcCCC
Q psy2398 366 RLQGQFIRSYIQAFIRKSK 384 (433)
Q Consensus 366 ~~qa~~~a~~i~g~~~lp~ 384 (433)
+.+.++++.++.-......
T Consensus 400 ~~~~~~~~~~~~~~~~~~~ 418 (443)
T COG2072 400 ELRITLLADAIAHGRTLGL 418 (443)
T ss_pred hhhhhHHHHHHHhcccccc
Confidence 6777777777655544444
No 5
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=5.6e-34 Score=265.04 Aligned_cols=285 Identities=20% Similarity=0.239 Sum_probs=206.2
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHHH
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSM 87 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (433)
+||+|||||++|+++|..|++.|++|++||+.+ .||.|.... .+..++.+ +......+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~---------------~~~~~~~~------~~~~~~~~ 58 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTT---------------EVENYPGF------PEGISGPE 58 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecc---------------cccccCCC------CCCCChHH
Confidence 589999999999999999999999999999876 777665420 01111111 11234568
Q ss_pred HHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCceeccCCC
Q psy2398 88 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDY 165 (433)
Q Consensus 88 ~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~~~~~~~ 165 (433)
+..++..+++++++ ++++ ++|+.++++++.|.+++.++.++.||+||+|||. .|+.|.+|| .+.+..++....
T Consensus 59 ~~~~l~~~~~~~gv--~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~--~~~~~~i~g~~~~~~~~~~~~~~ 133 (300)
T TIGR01292 59 LMEKMKEQAVKFGA--EIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGA--SARKLGIPGEDEFLGRGVSYCAT 133 (300)
T ss_pred HHHHHHHHHHHcCC--eEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCC--CcccCCCCChhhcCCccEEEeee
Confidence 88999999999987 4666 8999999888889999888778999999999998 778888888 455555554444
Q ss_pred CCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHH
Q psy2398 166 KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFK 245 (433)
Q Consensus 166 ~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 245 (433)
.....+++++|+|||+|.+|+|+|..|++.+++|+++.|++.+... . .+.+.+.
T Consensus 134 ~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~--------------------~-----~~~~~l~- 187 (300)
T TIGR01292 134 CDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAE--------------------K-----ILLDRLR- 187 (300)
T ss_pred cChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCcC--------------------H-----HHHHHHH-
Confidence 4445567899999999999999999999999999999987642100 0 1111111
Q ss_pred HhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC----eEEec---CC--ceeeccEEEEccCC
Q psy2398 246 LAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN----IVHFV---DD--THIEVDTIIYATGY 316 (433)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~----~v~~~---dG--~~~~~D~vi~atG~ 316 (433)
.. .++ ++.....+.++.+. .+.+. +| .++++|.||+|||+
T Consensus 188 ---~~---~gv-------------------------~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 236 (300)
T TIGR01292 188 ---KN---PNI-------------------------EFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGH 236 (300)
T ss_pred ---hC---CCe-------------------------EEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCC
Confidence 00 011 12223344454432 23332 23 46899999999999
Q ss_pred CCCCCCCCcccccc-cCCccccccccccCCCCcEEEEccccc-cCChhhHHHHHHHHHHHHHhh
Q psy2398 317 NRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNA-AAGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 317 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~-~~~~~~~a~~qa~~~a~~i~g 378 (433)
+|+.++++.. +.. ..+++.+++. +.+++||||++||++. ....+..|..||+.+|.++..
T Consensus 237 ~~~~~~l~~~-~~~~~~g~i~v~~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 298 (300)
T TIGR01292 237 EPNTELLKGL-LELDEGGYIVTDEG-MRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAER 298 (300)
T ss_pred CCChHHHHHh-heecCCCcEEECCC-CccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHh
Confidence 9998888755 433 3456666655 5789999999999987 356677899999999988864
No 6
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=1.1e-32 Score=257.93 Aligned_cols=290 Identities=20% Similarity=0.277 Sum_probs=203.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCC
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
..+.+||+||||||+||+||..|+++|+++++||+. ..||.+..... ...++. .+...
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~~---------------~~~~~~------~~~~~ 60 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTE---------------VENWPG------DPNDL 60 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCce---------------ECCCCC------CCCCC
Confidence 456799999999999999999999999999999964 67877654310 011111 11234
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCceec
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILH 161 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~~~ 161 (433)
...++.+++.+.++.++. .+.++ +|+.|+..++.|+++.+++ .+.||+||+|||+ .|+.|++|| .|.+..+|
T Consensus 61 ~~~~~~~~~~~~~~~~~~--~~~~~-~v~~v~~~~~~~~v~~~~~-~~~~d~vilAtG~--~~~~~~i~g~~~~~~~~v~ 134 (321)
T PRK10262 61 TGPLLMERMHEHATKFET--EIIFD-HINKVDLQNRPFRLTGDSG-EYTCDALIIATGA--SARYLGLPSEEAFKGRGVS 134 (321)
T ss_pred CHHHHHHHHHHHHHHCCC--EEEee-EEEEEEecCCeEEEEecCC-EEEECEEEECCCC--CCCCCCCCCHHHcCCCcEE
Confidence 567788999999988876 35554 6778887778888876544 6899999999999 788899999 56677777
Q ss_pred cCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHH
Q psy2398 162 SMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIK 241 (433)
Q Consensus 162 ~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 241 (433)
.+...+.....+++|+|||+|.+|+|+|..|++.+++|+++.|++.+. . . . .+.+
T Consensus 135 ~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-~------~---------~---------~~~~ 189 (321)
T PRK10262 135 ACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-A------E---------K---------ILIK 189 (321)
T ss_pred EeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-C------C---------H---------HHHH
Confidence 777666666789999999999999999999999999999999986421 0 0 0 1111
Q ss_pred HHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCee--ecCCceeeeCC-----eEEecCC------ceeecc
Q psy2398 242 QVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNGN-----IVHFVDD------THIEVD 308 (433)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~v~~~~~~-----~v~~~dG------~~~~~D 308 (433)
.+ .+.+....|. ....+.++.+. .|.+.++ +++++|
T Consensus 190 ~~-------------------------------~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D 238 (321)
T PRK10262 190 RL-------------------------------MDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVA 238 (321)
T ss_pred HH-------------------------------HhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECC
Confidence 11 1111222333 34456666543 3555442 368999
Q ss_pred EEEEccCCCCCCCCCCcccccccCCccccccc----cccCCCCcEEEEccccccC-ChhhHHHHHHHHHHHHHhh
Q psy2398 309 TIIYATGYNRHFPFIDKEKLEWKLGIPDLFIH----IAPRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 309 ~vi~atG~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~p~i~~iG~~~~~~-~~~~~a~~qa~~~a~~i~g 378 (433)
.||+++|++|+..+++. .+..+.+++.+..+ .+.|+.|+||++|||...+ .....|..++..+|..+..
T Consensus 239 ~vv~a~G~~p~~~l~~~-~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~ 312 (321)
T PRK10262 239 GLFVAIGHSPNTAIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAER 312 (321)
T ss_pred EEEEEeCCccChhHhhc-cccccCCEEEECCCCcccccccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHHH
Confidence 99999999999887763 34444455555542 3578999999999998542 2333455555555555443
No 7
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-32 Score=247.99 Aligned_cols=278 Identities=21% Similarity=0.231 Sum_probs=203.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCC-eEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCC--
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNIN-YDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVY-- 82 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~-v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 82 (433)
+++||+||||||+||+||.++.+.+++ ++|+|+ ...||...... . -+++|.+
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~~~~---------------~---------venypg~~~ 56 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLTKTT---------------D---------VENYPGFPG 56 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCccccce---------------e---------ecCCCCCcc
Confidence 458999999999999999999999999 555554 55665433320 1 1223333
Q ss_pred -CCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCce
Q psy2398 83 -PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEI 159 (433)
Q Consensus 83 -~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~ 159 (433)
....++.+-+++.+..++.. +.. ..|..++..++.|.|+++++. +++++||+|||. .++.|.++| +|.|+.
T Consensus 57 ~~~g~~L~~~~~~~a~~~~~~--~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~--~~~~~~~~~e~e~~g~g 130 (305)
T COG0492 57 GILGPELMEQMKEQAEKFGVE--IVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGA--GARKLGVPGEEEFEGKG 130 (305)
T ss_pred CCchHHHHHHHHHHHhhcCeE--EEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCC--cccCCCCCcchhhcCCc
Confidence 34688888899999988873 433 678888775448999999987 999999999999 788888887 788999
Q ss_pred eccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHH
Q psy2398 160 LHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY 239 (433)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 239 (433)
+|.+..++. .+++|.|+|||+|+||+|.|..|++.+++||+++|++.+... . ..
T Consensus 131 v~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~----------------~---------~~ 184 (305)
T COG0492 131 VSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAE----------------E---------IL 184 (305)
T ss_pred eEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCcC----------------H---------HH
Confidence 999999998 899999999999999999999999999999999999753210 0 11
Q ss_pred HHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC---CeEEecCCc----eeeccEEEE
Q psy2398 240 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG---NIVHFVDDT----HIEVDTIIY 312 (433)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~---~~v~~~dG~----~~~~D~vi~ 312 (433)
.+++.+. . .-.+.....++++.+ .+|.+++.. .+.+|-++.
T Consensus 185 ~~~l~~~----~----------------------------~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~ 232 (305)
T COG0492 185 VERLKKN----V----------------------------KIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFI 232 (305)
T ss_pred HHHHHhc----C----------------------------CeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEE
Confidence 2211100 0 003334567778776 467777642 588999999
Q ss_pred ccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEccccccCC-hhhHHHHHHHHHH
Q psy2398 313 ATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAG-LGDGLRLQGQFIR 373 (433)
Q Consensus 313 atG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~-~~~~a~~qa~~~a 373 (433)
++|+.|+..|+.......+.+++.+... +.|+.|+||++||++.... .+..+-.++-.+|
T Consensus 233 ~iG~~p~~~~~~~~~~~~~~g~I~v~~~-~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa 293 (305)
T COG0492 233 AIGHLPNTELLKGLGVLDENGYIVVDEE-METSVPGIFAAGDVADKNGRQIATAAGDGAIAA 293 (305)
T ss_pred ecCCCCchHHHhhccccCCCCcEEcCCC-cccCCCCEEEeEeeccCcccEEeehhhhHHHHH
Confidence 9999999998875544223455555555 8999999999999997532 3333444433333
No 8
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=7.6e-33 Score=263.45 Aligned_cols=310 Identities=19% Similarity=0.202 Sum_probs=202.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcc-cCC----CCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT-QVP----DYPMPDNYP 80 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~ 80 (433)
..||++||||||+|..+|..+++.|.+|.++|+...+||+|.+.. |.|+..+....... .+. .+.......
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~G----CIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~ 78 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVG----CIPSKALLHAAEVIEEARHAAKEYGISAEVP 78 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeC----ccccHHHHHHHHHHHHHhhcccccceecCCC
Confidence 569999999999999999999999999999999888999999873 45544433322221 111 111111111
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcceEe-CcEEEEEEEe-----CCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCC
Q psy2398 81 VYPNHSMMLDYLRSYAKKFDVYNHSIF-NTEVINLEQY-----EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY 154 (433)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~i~~-~~~V~~v~~~-----~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~ 154 (433)
-....++.+..+...+...-...-.+ ...|+-+.-. ++...|...+.++++++++|||||+ .|..|++++.
T Consensus 79 -~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS--~p~~~~~~~~ 155 (454)
T COG1249 79 -KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGS--RPRIPPGPGI 155 (454)
T ss_pred -CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCC--CCcCCCCCCC
Confidence 12233333333332222110000001 1122222221 2433443322467999999999999 9999988872
Q ss_pred CCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCch
Q psy2398 155 FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKE 234 (433)
Q Consensus 155 ~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~ 234 (433)
....++.+.+.....+ -+++++|||+|.+|+|+|..+++.|.+||++.|.+. ++|..+ +
T Consensus 156 ~~~~~~~s~~~l~~~~-lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~-iLp~~D-------------~------ 214 (454)
T COG1249 156 DGARILDSSDALFLLE-LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDR-ILPGED-------------P------ 214 (454)
T ss_pred CCCeEEechhhccccc-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC-CCCcCC-------------H------
Confidence 2223555555444443 378999999999999999999999999999999876 444321 1
Q ss_pred HHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCee--ecCCceeeeC----CeEEecCCc--eee
Q psy2398 235 ETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNG----NIVHFVDDT--HIE 306 (433)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~v~~~~~----~~v~~~dG~--~~~ 306 (433)
...+. +.+.+.++.+. ....+++++. ..+.+++|. +++
T Consensus 215 ---ei~~~-------------------------------~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ 260 (454)
T COG1249 215 ---EISKE-------------------------------LTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIE 260 (454)
T ss_pred ---HHHHH-------------------------------HHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEE
Confidence 11111 11111222233 3445555543 246777877 688
Q ss_pred ccEEEEccCCCCCCCCCCc--ccccccC-CccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhh
Q psy2398 307 VDTIIYATGYNRHFPFIDK--EKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 307 ~D~vi~atG~~~~~~~l~~--~~~~~~~-~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g 378 (433)
+|.|++|+|++|+++-|.. .+++.+. +++.++ ..+.++.|+|||+||+...+.+.+.|..|++.+|.++.|
T Consensus 261 ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD-~~~~Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 261 ADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD-DQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred eeEEEEccCCccCCCCCChhhcCceECCCCCEEeC-CccccCCCCEEEeeccCCCcccHhHHHHHHHHHHHHHhC
Confidence 9999999999999996544 4555544 577777 787888999999999987777899999999999999997
No 9
>PLN02507 glutathione reductase
Probab=100.00 E-value=1.2e-32 Score=270.47 Aligned_cols=307 Identities=18% Similarity=0.181 Sum_probs=196.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEcc---------CCCCCCcccCCCCCCccccceEeecCCCc----ccCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEM---------ESDLGGVWNSQASCGRVYPSLHLISPKFN----TQVPDY 73 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~---------~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 73 (433)
.|||+||||||+|+.+|..++++|.+|+|+|+ ...+||+|.+.. |+|+..+...... .....+
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~G----ciPsK~l~~~a~~~~~~~~~~~~ 100 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRG----CVPKKILVYGATFGGEFEDAKNY 100 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccC----chhHHHHHHHHHHHHHHHHHHhc
Confidence 48999999999999999999999999999996 356999998762 4554443221111 000111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHH-----------HHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCc--EEEeCEEEEcc
Q psy2398 74 PMPDNYPVYPNHSMMLDYLRSY-----------AKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK--KKKYDFIAVCN 140 (433)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~--~~~~d~vIvAt 140 (433)
..............+.+..... ....++ .+. ..++..++ .+.++|++.+|+ ++.||+||+||
T Consensus 101 G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~i-~g~a~~vd--~~~v~V~~~~g~~~~~~~d~LIIAT 175 (499)
T PLN02507 101 GWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGV--KLY-EGEGKIVG--PNEVEVTQLDGTKLRYTAKHILIAT 175 (499)
T ss_pred CcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEE-EEEEEEec--CCEEEEEeCCCcEEEEEcCEEEEec
Confidence 1100000012223333332222 222333 111 22333333 467888887765 47899999999
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChh
Q psy2398 141 GAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTP 220 (433)
Q Consensus 141 G~~s~p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~ 220 (433)
|+ .|..|+++|. ....++.+...... .+++|+|||+|.+|+|+|..++..+.+|++++|.+.. ++.+
T Consensus 176 Gs--~p~~p~ipG~--~~~~~~~~~~~l~~-~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~-l~~~------- 242 (499)
T PLN02507 176 GS--RAQRPNIPGK--ELAITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP-LRGF------- 242 (499)
T ss_pred CC--CCCCCCCCCc--cceechHHhhhhhh-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc-Cccc-------
Confidence 98 8888989881 11122222222222 2689999999999999999999999999999987642 2211
Q ss_pred HHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--C--e
Q psy2398 221 QWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--N--I 296 (433)
Q Consensus 221 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~--~ 296 (433)
+..+.. .+.+ .+. ..++ ++.....++++.+ . .
T Consensus 243 ------d~~~~~-----~l~~----~l~----~~GI-------------------------~i~~~~~V~~i~~~~~~~~ 278 (499)
T PLN02507 243 ------DDEMRA-----VVAR----NLE----GRGI-------------------------NLHPRTNLTQLTKTEGGIK 278 (499)
T ss_pred ------CHHHHH-----HHHH----HHH----hCCC-------------------------EEEeCCEEEEEEEeCCeEE
Confidence 011111 1111 111 1111 3333445566542 2 3
Q ss_pred EEecCCceeeccEEEEccCCCCCCCCCC--ccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHH
Q psy2398 297 VHFVDDTHIEVDTIIYATGYNRHFPFID--KEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIR 373 (433)
Q Consensus 297 v~~~dG~~~~~D~vi~atG~~~~~~~l~--~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a 373 (433)
+.+.+|+++++|.||+|+|++|+..++. ...+..+ .+++.+++++ .++.||||++|||.....+.+.|..||+.++
T Consensus 279 v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~-~Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa 357 (499)
T PLN02507 279 VITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYS-RTNIPSIWAIGDVTNRINLTPVALMEGTCFA 357 (499)
T ss_pred EEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCC-cCCCCCEEEeeEcCCCCccHHHHHHHHHHHH
Confidence 5667888899999999999999998753 3344443 3556666554 6899999999999976678889999999999
Q ss_pred HHHhhhh
Q psy2398 374 SYIQAFI 380 (433)
Q Consensus 374 ~~i~g~~ 380 (433)
.++.|..
T Consensus 358 ~ni~g~~ 364 (499)
T PLN02507 358 KTVFGGQ 364 (499)
T ss_pred HHHcCCC
Confidence 9998753
No 10
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=2.6e-32 Score=268.12 Aligned_cols=307 Identities=20% Similarity=0.211 Sum_probs=199.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecC-------CCcccCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISP-------KFNTQVPDYPMPD 77 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 77 (433)
+.++||+||||||+|+++|..|++.|.+|++||+.+.+||+|.+.. |.++..+... .....|..++.
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~g----cipsk~l~~~~~~~~~~~~~~~~~~~~~-- 76 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTG----TIPSKALREAVLRLIGFNQNPLYSSYRV-- 76 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccC----CCCHHHHHHHHHHHHHHhhhhhhcccCC--
Confidence 3569999999999999999999999999999999888999997663 2332221110 00001111111
Q ss_pred CCCCCCCHHHHHHH-----------HHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCc--EEEeCEEEEccCCCC
Q psy2398 78 NYPVYPNHSMMLDY-----------LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK--KKKYDFIAVCNGAQR 144 (433)
Q Consensus 78 ~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~--~~~~d~vIvAtG~~s 144 (433)
....+..++.++ +....++.++ .+..+ ++..+ +.+.+.+...++. .+.||+||+|||+
T Consensus 77 --~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g-~~~~~--~~~~~~v~~~~g~~~~~~~d~lviATGs-- 147 (461)
T PRK05249 77 --KLRITFADLLARADHVINKQVEVRRGQYERNRV--DLIQG-RARFV--DPHTVEVECPDGEVETLTADKIVIATGS-- 147 (461)
T ss_pred --cCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEE-EEEEe--cCCEEEEEeCCCceEEEEcCEEEEcCCC--
Confidence 111233333333 3333444454 23333 33333 2466777776664 6899999999998
Q ss_pred CCCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhH
Q psy2398 145 VARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWML 224 (433)
Q Consensus 145 ~p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~ 224 (433)
.|..|++++.....+.++....... ..+++++|||+|.+|+|+|..+++.+.+|+++.+++.. +|..
T Consensus 148 ~p~~p~~~~~~~~~v~~~~~~~~~~-~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~-l~~~----------- 214 (461)
T PRK05249 148 RPYRPPDVDFDHPRIYDSDSILSLD-HLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL-LSFL----------- 214 (461)
T ss_pred CCCCCCCCCCCCCeEEcHHHhhchh-hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc-CCcC-----------
Confidence 7888877662122344444433332 34789999999999999999999999999999988642 2211
Q ss_pred hhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee--CC--eEEec
Q psy2398 225 QLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN--GN--IVHFV 300 (433)
Q Consensus 225 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~--~~--~v~~~ 300 (433)
.. .+.+.+.+.+. ..++ ++.....++++. +. .+.+.
T Consensus 215 --d~---------~~~~~l~~~l~----~~gI-------------------------~v~~~~~v~~i~~~~~~~~v~~~ 254 (461)
T PRK05249 215 --DD---------EISDALSYHLR----DSGV-------------------------TIRHNEEVEKVEGGDDGVIVHLK 254 (461)
T ss_pred --CH---------HHHHHHHHHHH----HcCC-------------------------EEEECCEEEEEEEeCCeEEEEEC
Confidence 01 11111111111 0111 333344555554 22 34567
Q ss_pred CCceeeccEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHh
Q psy2398 301 DDTHIEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQ 377 (433)
Q Consensus 301 dG~~~~~D~vi~atG~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~ 377 (433)
+|+++++|.||+|+|++|+..++ +...+..+ .+.+.+++ .+.++.|+||++||+...+...+.|..||+.+|.++.
T Consensus 255 ~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~-~~~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~ 333 (461)
T PRK05249 255 SGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNE-NYQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAV 333 (461)
T ss_pred CCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCC-CcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHc
Confidence 88889999999999999998865 33344443 34566654 4578899999999998766778899999999999998
Q ss_pred hhh
Q psy2398 378 AFI 380 (433)
Q Consensus 378 g~~ 380 (433)
|..
T Consensus 334 g~~ 336 (461)
T PRK05249 334 GEA 336 (461)
T ss_pred CCC
Confidence 763
No 11
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=1.5e-31 Score=264.88 Aligned_cols=291 Identities=16% Similarity=0.176 Sum_probs=211.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
...+||+||||||+|++||.+|++.|++++++++. +||.|..... ++ .+.. . .+..
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~----~~-----------~~~~------~-~~~~ 264 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMG----IE-----------NFIS------V-PETE 264 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCc----cc-----------ccCC------C-CCCC
Confidence 34689999999999999999999999999999863 8988754200 00 0000 0 1345
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCceecc
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHS 162 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~~~~ 162 (433)
..++.+++...++++++ .++++++|+.++..++.|.|++.++..+.||.||+|||. .++.|++|| .|.+..+|.
T Consensus 265 ~~~l~~~l~~~~~~~gv--~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~--~~r~~~ipG~~~~~~~~v~~ 340 (517)
T PRK15317 265 GPKLAAALEEHVKEYDV--DIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGA--RWRNMNVPGEDEYRNKGVAY 340 (517)
T ss_pred HHHHHHHHHHHHHHCCC--EEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCC--CcCCCCCCCHHHhcCceEEE
Confidence 67899999999999998 588899999999877889999888888999999999999 678888998 566666666
Q ss_pred CCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHH
Q psy2398 163 MDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQ 242 (433)
Q Consensus 163 ~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 242 (433)
+...+...+++|+|+|||+|++|+|+|..|+..+++|+++.+.+..... . .+.+.
T Consensus 341 ~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~--------------------~-----~l~~~ 395 (517)
T PRK15317 341 CPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKAD--------------------Q-----VLQDK 395 (517)
T ss_pred eeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccccc--------------------H-----HHHHH
Confidence 5555555578999999999999999999999999999999987642100 0 11111
Q ss_pred HHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC-----eEEec---CCc--eeeccEEEE
Q psy2398 243 VFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN-----IVHFV---DDT--HIEVDTIIY 312 (433)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~-----~v~~~---dG~--~~~~D~vi~ 312 (433)
+. . ..++ ++.....+.++.+. .+.+. +|. ++++|.|++
T Consensus 396 l~----~---~~gI-------------------------~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~ 443 (517)
T PRK15317 396 LR----S---LPNV-------------------------TIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFV 443 (517)
T ss_pred Hh----c---CCCc-------------------------EEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEE
Confidence 00 0 0011 22233445555433 24443 343 489999999
Q ss_pred ccCCCCCCCCCCcccccc-cCCccccccccccCCCCcEEEEccccccC-ChhhHHHHHHHHHHHHHhhhhcC
Q psy2398 313 ATGYNRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQAFIRK 382 (433)
Q Consensus 313 atG~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~-~~~~~a~~qa~~~a~~i~g~~~l 382 (433)
|+|++|+.++++.. +.. ..+++.+++. +.++.|+||++||+...+ ..+..|..++..+|..+...+..
T Consensus 444 ~~G~~p~~~~l~~~-v~~~~~g~i~vd~~-l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~~l~~ 513 (517)
T PRK15317 444 QIGLVPNTEWLKGT-VELNRRGEIIVDAR-GATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFDYLIR 513 (517)
T ss_pred eECCccCchHHhhh-eeeCCCCcEEECcC-CCCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHHHHhh
Confidence 99999999998754 444 3355655554 468999999999998753 44667888888888777655443
No 12
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=3.8e-32 Score=264.50 Aligned_cols=302 Identities=20% Similarity=0.219 Sum_probs=189.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCC----cccCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKF----NTQVPDYPMPDNYPVY 82 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 82 (433)
.+||+||||||+|++||..|++.|.+|+++|+. .+||+|.+.. |.|+..+..... +.....+..+......
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~g----ciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 76 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVG----CVPKKVMWYASDLAERMHDAADYGFYQNLENT 76 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccC----cCccHHHHHHHHHHHHHhHHhhcCcccCCcCc
Confidence 589999999999999999999999999999995 6999998763 344321111100 0001111111110001
Q ss_pred CCHHHHHHH-----------HHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC-C
Q psy2398 83 PNHSMMLDY-----------LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP-N 150 (433)
Q Consensus 83 ~~~~~~~~~-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p-~ 150 (433)
....++.++ +....++.++ .+..++.+. .+++ +|.. ++..+.||+||+|||+ .|..| +
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g~~~~---~~~~--~v~v-~~~~~~~d~vIiAtGs--~p~~p~~ 146 (450)
T TIGR01421 77 FNWPELKEKRDAYVDRLNGIYQKNLEKNKV--DVIFGHARF---TKDG--TVEV-NGRDYTAPHILIATGG--KPSFPEN 146 (450)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEEE---ccCC--EEEE-CCEEEEeCEEEEecCC--CCCCCCC
Confidence 122222222 3333334444 344443321 1123 3444 4457999999999998 78888 8
Q ss_pred CCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhh
Q psy2398 151 YSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF 230 (433)
Q Consensus 151 i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~ 230 (433)
+||.- ....+..+..... .+++++|||+|.+|+|+|..|+..+.+||++.|.+.. ++.+ +..+
T Consensus 147 i~g~~--~~~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~i-l~~~-------------d~~~ 209 (450)
T TIGR01421 147 IPGAE--LGTDSDGFFALEE-LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERV-LRSF-------------DSMI 209 (450)
T ss_pred CCCCc--eeEcHHHhhCccc-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC-Cccc-------------CHHH
Confidence 88821 1122222222222 3689999999999999999999999999999988642 2221 1111
Q ss_pred cCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC-----CeEEecCC-ce
Q psy2398 231 SSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG-----NIVHFVDD-TH 304 (433)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~-----~~v~~~dG-~~ 304 (433)
.. .+.+. +. ..++ ++.....++++.+ ..+.+++| ++
T Consensus 210 ~~-----~~~~~----l~----~~gI-------------------------~i~~~~~v~~i~~~~~~~~~v~~~~g~~~ 251 (450)
T TIGR01421 210 SE-----TITEE----YE----KEGI-------------------------NVHKLSKPVKVEKTVEGKLVIHFEDGKSI 251 (450)
T ss_pred HH-----HHHHH----HH----HcCC-------------------------EEEcCCEEEEEEEeCCceEEEEECCCcEE
Confidence 11 11111 11 1111 2223344555542 23567788 56
Q ss_pred eeccEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 305 IEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 305 ~~~D~vi~atG~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
+++|.||+|+|++|+..+| +...+..+ .+.+.+++. +.|+.|+||++|||+......+.|..||+.+|++|.+.
T Consensus 252 i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~-~~T~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~~ 328 (450)
T TIGR01421 252 DDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEY-QNTNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFNG 328 (450)
T ss_pred EEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCC-CcCCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999865 33344443 345655554 67899999999999977778889999999999999864
No 13
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=100.00 E-value=5.3e-33 Score=243.16 Aligned_cols=189 Identities=33% Similarity=0.546 Sum_probs=139.5
Q ss_pred EEECCChHHHHHHHHHHhcCCC-eEEEccCCCCCCcccCCCCCCccccceEeecCCCc---ccCCCCCCC--------CC
Q psy2398 11 CIIGGGPLGIGLGRELSEGNIN-YDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFN---TQVPDYPMP--------DN 78 (433)
Q Consensus 11 ~IIGaG~~Gl~~a~~l~~~g~~-v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--------~~ 78 (433)
+||||||+||++|.+|+++|++ ++|||+++.+||.|....+ ...+.++... ..++++... .+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYS------YTRLHSPSFFSSDFGLPDFESFSFDDSPEWRW 74 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-T------TTT-BSSSCCTGGSS--CCCHSCHHHHHHHHH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCC------CCccccCccccccccCCcccccccccCCCCCC
Confidence 6999999999999999999998 9999999999999996422 2222222211 111111110 01
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCC
Q psy2398 79 YPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSG 157 (433)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g 157 (433)
...+++..++.+|++.+++++++. ++++++|++++++++.|.|++.++.++.||+||+|||.++.|+.|+++| .+.
T Consensus 75 ~~~~~~~~~v~~yl~~~~~~~~l~--i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~- 151 (203)
T PF13738_consen 75 PHDFPSGEEVLDYLQEYAERFGLE--IRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFR- 151 (203)
T ss_dssp SBSSEBHHHHHHHHHHHHHHTTGG--EETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCS-
T ss_pred CcccCCHHHHHHHHHHHHhhcCcc--cccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcccccccccc-
Confidence 235688999999999999999984 9999999999999888999999987899999999999999999999999 555
Q ss_pred ceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCce
Q psy2398 158 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYH 208 (433)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~ 208 (433)
..+|+.++.+...+++|+|+|||+|.||+|+|..|++.+++|++++|++.|
T Consensus 152 ~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 152 PIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp EEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred ceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence 788999999999999999999999999999999999999999999999865
No 14
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=1.9e-31 Score=259.92 Aligned_cols=302 Identities=15% Similarity=0.144 Sum_probs=195.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCC----cccCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKF----NTQVPDYPMPDNYPVY 82 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 82 (433)
.|||+||||||+|++||..++++|.+|+++|+ +.+||+|.+.. |.|+..+..+.. +..+..+........
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~~g----ciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~- 75 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVIRG----CVPKKLMVYGSTFGGEFEDAAGYGWTVGKAR- 75 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeecCC----cCchHHHHHHHHHHHHHhhhHhcCcCCCCCC-
Confidence 48999999999999999999999999999998 47999998763 444432211111 111111111000000
Q ss_pred CCH-----------HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCC
Q psy2398 83 PNH-----------SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNY 151 (433)
Q Consensus 83 ~~~-----------~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i 151 (433)
... ..+.++++...++.++ .+.. .++..++. +...+. .++..+.||+||+|||+ .|..|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~~~-g~~~~v~~--~~v~v~-~~g~~~~~d~lIiATGs--~p~~p~i 147 (446)
T TIGR01424 76 FDWKKLLQKKDDEIARLSGLYKRLLANAGV--ELLE-GRARLVGP--NTVEVL-QDGTTYTAKKILIAVGG--RPQKPNL 147 (446)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEE-EEEEEecC--CEEEEe-cCCeEEEcCEEEEecCC--cCCCCCC
Confidence 111 2234445555556666 2433 35555543 344443 35667999999999998 8889999
Q ss_pred CC-CCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhh
Q psy2398 152 SG-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF 230 (433)
Q Consensus 152 ~g-~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~ 230 (433)
+| .. .+.+.+..... ..+++++|||+|.+|+|+|..+++.+.+|+++.+.+.. ++.. +.
T Consensus 148 ~G~~~---~~~~~~~~~l~-~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~-l~~~-------------d~-- 207 (446)
T TIGR01424 148 PGHEL---GITSNEAFHLP-TLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI-LRGF-------------DD-- 207 (446)
T ss_pred CCccc---eechHHhhccc-ccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC-Cccc-------------CH--
Confidence 88 21 12222222211 23689999999999999999999999999999987642 2211 01
Q ss_pred cCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC----CeEEecCCceee
Q psy2398 231 SSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG----NIVHFVDDTHIE 306 (433)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~----~~v~~~dG~~~~ 306 (433)
...+.+.+.+. ..++ ++.....+.+++. ..+.+.+|++++
T Consensus 208 -------~~~~~l~~~l~----~~gV-------------------------~i~~~~~v~~i~~~~~~~~v~~~~g~~i~ 251 (446)
T TIGR01424 208 -------DMRALLARNME----GRGI-------------------------RIHPQTSLTSITKTDDGLKVTLSHGEEIV 251 (446)
T ss_pred -------HHHHHHHHHHH----HCCC-------------------------EEEeCCEEEEEEEcCCeEEEEEcCCcEee
Confidence 11111111111 1111 2333444555542 235667888999
Q ss_pred ccEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 307 VDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 307 ~D~vi~atG~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
+|.||+|+|++|+...+ +...+..+ .+++.+++. +.|+.|+||++|||.....+.+.|..||+.++.++.|.
T Consensus 252 ~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~-~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~~ 326 (446)
T TIGR01424 252 ADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEY-SRTSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFGN 326 (446)
T ss_pred cCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCC-CccCCCCEEEeeccCCCccchhHHHHHHHHHHHHHhcC
Confidence 99999999999998864 33344443 345666655 47899999999999977778889999999999999874
No 15
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=4.6e-31 Score=261.03 Aligned_cols=288 Identities=17% Similarity=0.181 Sum_probs=205.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
...+||+||||||+|++||..|++.|++|++++. .+||.+..... +. .+... ....
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~~----~~-----------~~~~~-------~~~~ 265 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTVG----IE-----------NLISV-------PYTT 265 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCcC----cc-----------ccccc-------CCCC
Confidence 3468999999999999999999999999999985 58887754200 00 00000 1234
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCceecc
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHS 162 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~~~~ 162 (433)
..++.+++.+.++.+++ .++.+++|+.++.+++.+.+++.++..+.||+||+|||+ .|+.|+++| .+.+..++.
T Consensus 266 ~~~l~~~l~~~l~~~gv--~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa--~~~~~~ipG~~~~~~~~v~~ 341 (515)
T TIGR03140 266 GSQLAANLEEHIKQYPI--DLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGA--RWRKLGVPGEKEYIGKGVAY 341 (515)
T ss_pred HHHHHHHHHHHHHHhCC--eEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCC--CcCCCCCCCHHHcCCCeEEE
Confidence 67788888888888887 588899999998877789999888888999999999998 678888988 444444444
Q ss_pred CCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHH
Q psy2398 163 MDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQ 242 (433)
Q Consensus 163 ~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 242 (433)
....+...+.+++|+|||+|.+|+|+|..|+..+++|+++.+.+..... . .+.+.
T Consensus 342 ~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~~--------------------~-----~l~~~ 396 (515)
T TIGR03140 342 CPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKAD--------------------K-----VLQDK 396 (515)
T ss_pred eeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCChh--------------------H-----HHHHH
Confidence 4333333456899999999999999999999999999999876532100 0 11111
Q ss_pred HHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC-----eEEecC---C--ceeeccEEEE
Q psy2398 243 VFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN-----IVHFVD---D--THIEVDTIIY 312 (433)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~-----~v~~~d---G--~~~~~D~vi~ 312 (433)
+.. ..++ .+.....+.++.+. .|.+.+ | +++++|.||+
T Consensus 397 ----l~~---~~gV-------------------------~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~ 444 (515)
T TIGR03140 397 ----LKS---LPNV-------------------------DILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFV 444 (515)
T ss_pred ----Hhc---CCCC-------------------------EEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEE
Confidence 100 0111 23334455566433 355544 2 3589999999
Q ss_pred ccCCCCCCCCCCcccccc-cCCccccccccccCCCCcEEEEccccccC-ChhhHHHHHHHHHHHHHhhh
Q psy2398 313 ATGYNRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 313 atG~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~-~~~~~a~~qa~~~a~~i~g~ 379 (433)
|+|++|+.++++.. +.. ..+.+.+++ .+.++.|+||++|||+..+ ..+..|..||..+|..+.+.
T Consensus 445 a~G~~Pn~~~l~~~-~~~~~~G~I~vd~-~~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~~ 511 (515)
T TIGR03140 445 QIGLVPNTEWLKDA-VELNRRGEIVIDE-RGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDY 511 (515)
T ss_pred EeCCcCCchHHhhh-cccCCCCeEEECC-CCCCCCCCEEEcccccCCccceEEEEEccHHHHHHHHHHH
Confidence 99999999998754 444 334565555 4578999999999998753 34557888888888877654
No 16
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=1.3e-31 Score=262.02 Aligned_cols=303 Identities=18% Similarity=0.188 Sum_probs=193.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCC----cccC-CCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKF----NTQV-PDYPMPDNYP 80 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~ 80 (433)
..+||+||||||+|++||..|+++|.+|+|||+. .+||+|.+.. |.|+..+..... +..+ ..+......+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~g----ciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~ 77 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVG----CVPKKLMWYGAQIAEAFHDYAPGYGFDVTEN 77 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccC----cchHHHHHHHHHHHHHHHhHHHhcCCCCCCC
Confidence 4589999999999999999999999999999985 7999987752 344332111100 0000 0000000000
Q ss_pred CCCCHHHHH-----------HHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 81 VYPNHSMML-----------DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 81 ~~~~~~~~~-----------~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
......+. +.+.....+.++ .+..+ +++.++ . .+|++ ++..+.||+||+|||+ .|..|
T Consensus 78 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g-~~~~v~--~--~~v~~-~g~~~~~d~lViATGs--~p~~p 146 (450)
T PRK06116 78 -KFDWAKLIANRDAYIDRLHGSYRNGLENNGV--DLIEG-FARFVD--A--HTVEV-NGERYTADHILIATGG--RPSIP 146 (450)
T ss_pred -CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEcc--C--CEEEE-CCEEEEeCEEEEecCC--CCCCC
Confidence 11122222 222333334454 23333 344443 2 34555 5667999999999998 88999
Q ss_pred CCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchh
Q psy2398 150 NYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNK 229 (433)
Q Consensus 150 ~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~ 229 (433)
+++|. ....++........ .+++|+|||+|.+|+|+|..+.+.+.+|+++.|++.. ++.. +..
T Consensus 147 ~i~g~--~~~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-l~~~-------------~~~ 209 (450)
T PRK06116 147 DIPGA--EYGITSDGFFALEE-LPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP-LRGF-------------DPD 209 (450)
T ss_pred CCCCc--ceeEchhHhhCccc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC-cccc-------------CHH
Confidence 99881 12333333332222 3689999999999999999999999999999987642 2211 011
Q ss_pred hcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC-----CeEEecCCce
Q psy2398 230 FSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG-----NIVHFVDDTH 304 (433)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~-----~~v~~~dG~~ 304 (433)
+.. .+.+. +. ..++ ++.....+.++.. ..+.+.+|++
T Consensus 210 ~~~-----~l~~~----L~----~~GV-------------------------~i~~~~~V~~i~~~~~g~~~v~~~~g~~ 251 (450)
T PRK06116 210 IRE-----TLVEE----ME----KKGI-------------------------RLHTNAVPKAVEKNADGSLTLTLEDGET 251 (450)
T ss_pred HHH-----HHHHH----HH----HCCc-------------------------EEECCCEEEEEEEcCCceEEEEEcCCcE
Confidence 111 11111 11 1111 2333445666642 2356778989
Q ss_pred eeccEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhhh
Q psy2398 305 IEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 305 ~~~D~vi~atG~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
+++|.||+|+|++|+.+++ +...+..+ .+.+.++++ +.++.|+||++|||.......+.|..||+.+|++|.|..
T Consensus 252 i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 329 (450)
T PRK06116 252 LTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEY-QNTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNNK 329 (450)
T ss_pred EEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCC-CCcCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999864 33344443 455666655 578999999999998766778899999999999998843
No 17
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.8e-31 Score=261.72 Aligned_cols=312 Identities=16% Similarity=0.176 Sum_probs=197.5
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcc----cCC-CCCCCCC
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT----QVP-DYPMPDN 78 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~ 78 (433)
+...+||+||||||+|+++|..|++.|.+|+|||+. .+||+|.+.. |.|+..+.....+. .++ .+.....
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~G----ciPsk~l~~~a~~~~~~~~~~~~~g~~~~ 77 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIG----CVPSKIMIRAAHIAHLRRESPFDDGLSAQ 77 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCC----ccccHHHHHHHHHHHHHhhccccCCcccC
Confidence 567799999999999999999999999999999986 6999998652 33333221110000 000 0111101
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------C--CcceEe-CcEEEEEEEeCCeEEEEEccCc--EEEeCEEEEccCCCCCC
Q psy2398 79 YPVYPNHSMMLDYLRSYAKKFD-------V--YNHSIF-NTEVINLEQYEDIWEVELSNGK--KKKYDFIAVCNGAQRVA 146 (433)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~~~~~-------~--~~~i~~-~~~V~~v~~~~~~~~v~~~~g~--~~~~d~vIvAtG~~s~p 146 (433)
.+ -.....+.++.++....+. + ...+.+ ..++..++ .+.|+|++.++. ++.||+||+|||+ .|
T Consensus 78 ~~-~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id--~~~~~V~~~~g~~~~~~~d~lViATGs--~p 152 (468)
T PRK14694 78 AP-VVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVD--ERTLTVTLNDGGEQTVHFDRAFIGTGA--RP 152 (468)
T ss_pred CC-ccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEec--CCEEEEEecCCCeEEEECCEEEEeCCC--CC
Confidence 11 1234455544444433221 0 001221 23444443 567899888763 6899999999998 88
Q ss_pred CCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhh
Q psy2398 147 RYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQL 226 (433)
Q Consensus 147 ~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~ 226 (433)
..|+++|.....++++....... ..+++++|||+|.+|+|+|..|.+.+.+|+++.+.. ++|...
T Consensus 153 ~~p~i~G~~~~~~~~~~~~~~l~-~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~--~l~~~~------------ 217 (468)
T PRK14694 153 AEPPVPGLAETPYLTSTSALELD-HIPERLLVIGASVVALELAQAFARLGSRVTVLARSR--VLSQED------------ 217 (468)
T ss_pred CCCCCCCCCCCceEcchhhhchh-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC--CCCCCC------------
Confidence 99999982222344443332222 236899999999999999999999999999998642 233210
Q ss_pred chhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--CeEEe-cCCc
Q psy2398 227 GNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--NIVHF-VDDT 303 (433)
Q Consensus 227 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~~v~~-~dG~ 303 (433)
. .+.+.+.+.+. ..++ ++.....++++.. ..+.+ .++.
T Consensus 218 -~---------~~~~~l~~~l~----~~GI-------------------------~v~~~~~v~~i~~~~~~~~v~~~~~ 258 (468)
T PRK14694 218 -P---------AVGEAIEAAFR----REGI-------------------------EVLKQTQASEVDYNGREFILETNAG 258 (468)
T ss_pred -H---------HHHHHHHHHHH----hCCC-------------------------EEEeCCEEEEEEEcCCEEEEEECCC
Confidence 0 11111111111 1111 2333445555542 22222 2344
Q ss_pred eeeccEEEEccCCCCCCCCCCc--ccccccCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhhh
Q psy2398 304 HIEVDTIIYATGYNRHFPFIDK--EKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 304 ~~~~D~vi~atG~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
++++|.||+|+|.+|+..++.. ..+..+.+.+.++++ +.++.|+||++||++..+...+.|..|++.+|.+|.|..
T Consensus 259 ~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~-~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~~ 336 (468)
T PRK14694 259 TLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEH-LQTTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGGD 336 (468)
T ss_pred EEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCC-cccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHhcCCC
Confidence 6999999999999999988642 233444455666655 478999999999999877788899999999999998753
No 18
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.8e-31 Score=262.04 Aligned_cols=306 Identities=18% Similarity=0.193 Sum_probs=193.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCccc----CCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQ----VPDYPMPDNYPV 81 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 81 (433)
..+||+||||||+|++||..|+++|.+|+++|+.. +||+|.+.. |.|+..+........ +..+..... ..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~g----ciP~k~l~~~~~~~~~~~~~~~~g~~~~-~~ 76 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRG----CIPSKALLHAAERADEARHSEDFGIKAE-NV 76 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecc----cCCcHHHHHhhhHHHHHHHHHhcCcccC-CC
Confidence 46899999999999999999999999999999976 999987652 344333222111111 111111000 11
Q ss_pred CCCHHHHHHHHHHH-----------HHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc-CcEEEeCEEEEccCCCCCCCCC
Q psy2398 82 YPNHSMMLDYLRSY-----------AKKFDVYNHSIFNTEVINLEQYEDIWEVELSN-GKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 82 ~~~~~~~~~~l~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~-g~~~~~d~vIvAtG~~s~p~~p 149 (433)
......+.+|.+.. .++.++ .+..+ +++.++ .+.+++...+ +.++.||+||+|||+ .|..|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g-~~~~~~--~~~~~v~~~~~~~~~~~d~lViAtGs--~p~~~ 149 (462)
T PRK06416 77 GIDFKKVQEWKNGVVNRLTGGVEGLLKKNKV--DIIRG-EAKLVD--PNTVRVMTEDGEQTYTAKNIILATGS--RPREL 149 (462)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEcc--CCEEEEecCCCcEEEEeCEEEEeCCC--CCCCC
Confidence 23445555554333 333444 23333 333332 3556665433 357999999999998 56543
Q ss_pred CCCC-CCCCcee-ccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhc
Q psy2398 150 NYSG-YFSGEIL-HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLG 227 (433)
Q Consensus 150 ~i~g-~~~g~~~-~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p 227 (433)
|| ...+..+ ++.+..... ..+++++|||+|.+|+|+|..|.+.+.+||++.|.+. ++|...
T Consensus 150 --pg~~~~~~~v~~~~~~~~~~-~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~-~l~~~~------------- 212 (462)
T PRK06416 150 --PGIEIDGRVIWTSDEALNLD-EVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPR-ILPGED------------- 212 (462)
T ss_pred --CCCCCCCCeEEcchHhhCcc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC-cCCcCC-------------
Confidence 34 3333323 333332222 2468999999999999999999999999999998764 223210
Q ss_pred hhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--Ce--EEecCC-
Q psy2398 228 NKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--NI--VHFVDD- 302 (433)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~~--v~~~dG- 302 (433)
. ...+.+.+.+. ..++ ++.....+.++++ .. +.+.+|
T Consensus 213 ~---------~~~~~l~~~l~----~~gV-------------------------~i~~~~~V~~i~~~~~~v~v~~~~gg 254 (462)
T PRK06416 213 K---------EISKLAERALK----KRGI-------------------------KIKTGAKAKKVEQTDDGVTVTLEDGG 254 (462)
T ss_pred H---------HHHHHHHHHHH----HcCC-------------------------EEEeCCEEEEEEEeCCEEEEEEEeCC
Confidence 1 11111111111 1111 3333455666643 23 345566
Q ss_pred --ceeeccEEEEccCCCCCCCCCC--cccccccCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhh
Q psy2398 303 --THIEVDTIIYATGYNRHFPFID--KEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 303 --~~~~~D~vi~atG~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g 378 (433)
+++++|.||+|+|++|+..++. ...+..+.+++.++.++ .++.|+||++|||...+.....|..||+.+|.+|.|
T Consensus 255 ~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~-~t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 255 KEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQL-RTNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred eeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCC-ccCCCCEEEeeecCCCcchHHHHHHHHHHHHHHHcC
Confidence 6799999999999999998763 34444454556665544 688999999999987667888999999999999998
Q ss_pred hh
Q psy2398 379 FI 380 (433)
Q Consensus 379 ~~ 380 (433)
..
T Consensus 334 ~~ 335 (462)
T PRK06416 334 NP 335 (462)
T ss_pred CC
Confidence 53
No 19
>PRK14727 putative mercuric reductase; Provisional
Probab=99.98 E-value=3.7e-31 Score=259.89 Aligned_cols=313 Identities=13% Similarity=0.085 Sum_probs=192.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcc----cCCCCCCCCCC
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT----QVPDYPMPDNY 79 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 79 (433)
.+.++||+|||||++|+++|..|+++|.+|+++|+.+.+||+|.+.. |.|+..+..+.... ..+.+......
T Consensus 13 ~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~G----ciPsk~l~~~a~~~~~~~~~~~~g~~~~~ 88 (479)
T PRK14727 13 SKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVG----CVPSKILIRAAQLAHQQRSNPFDGVEAVA 88 (479)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecccc----ccccHHHHHHHHHHHHHhhccccCcccCC
Confidence 34568999999999999999999999999999999888999999763 44544322211110 01111111111
Q ss_pred CCCCCHHHHHHHHHHHHHHcC---CCcceEeCcEEEEE----EE-eCCeEEEEEccCc--EEEeCEEEEccCCCCCCCCC
Q psy2398 80 PVYPNHSMMLDYLRSYAKKFD---VYNHSIFNTEVINL----EQ-YEDIWEVELSNGK--KKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~~~---~~~~i~~~~~V~~v----~~-~~~~~~v~~~~g~--~~~~d~vIvAtG~~s~p~~p 149 (433)
+. .....+..........+. ....+..+..|.-+ .. +.+.+.|.+.++. ++.||+||+|||+ .|..|
T Consensus 89 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs--~p~~p 165 (479)
T PRK14727 89 PS-IDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGS--TPTIP 165 (479)
T ss_pred Cc-cCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCC--CCCCC
Confidence 11 122233222222221110 00001111112211 12 2567788776664 5899999999998 88999
Q ss_pred CCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchh
Q psy2398 150 NYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNK 229 (433)
Q Consensus 150 ~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~ 229 (433)
+++|.......++.+.... ...+++++|||+|.+|+|+|..+.+.+.+|+++.+.. +++... .
T Consensus 166 ~i~G~~~~~~~~~~~~l~~-~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~--~l~~~d-------------~- 228 (479)
T PRK14727 166 PIPGLMDTPYWTSTEALFS-DELPASLTVIGSSVVAAEIAQAYARLGSRVTILARST--LLFRED-------------P- 228 (479)
T ss_pred CCCCcCccceecchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC--CCCcch-------------H-
Confidence 9998322223333222211 2236899999999999999999999999999998752 333210 0
Q ss_pred hcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee--CCe--EEecCCcee
Q psy2398 230 FSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN--GNI--VHFVDDTHI 305 (433)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~--~~~--v~~~dG~~~ 305 (433)
...+.+.+.+. ..++ ++.....++++. +.. +.+.+| ++
T Consensus 229 --------~~~~~l~~~L~----~~GV-------------------------~i~~~~~V~~i~~~~~~~~v~~~~g-~i 270 (479)
T PRK14727 229 --------LLGETLTACFE----KEGI-------------------------EVLNNTQASLVEHDDNGFVLTTGHG-EL 270 (479)
T ss_pred --------HHHHHHHHHHH----hCCC-------------------------EEEcCcEEEEEEEeCCEEEEEEcCC-eE
Confidence 11111111111 1111 222233455543 222 333444 58
Q ss_pred eccEEEEccCCCCCCCCCCc--cccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 306 EVDTIIYATGYNRHFPFIDK--EKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 306 ~~D~vi~atG~~~~~~~l~~--~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
++|.||+|+|++|+..+|.. ..+..+ .+.+.+++. +.++.|+||++|||...+...+.|..||+.+|.++.|.
T Consensus 271 ~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~-~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~ 346 (479)
T PRK14727 271 RAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPA-METSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGG 346 (479)
T ss_pred EeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCC-eecCCCCEEEeeecCCcchhhhHHHHHHHHHHHHHcCC
Confidence 99999999999999887543 344443 355666655 57899999999999987777889999999999999875
No 20
>PRK06370 mercuric reductase; Validated
Probab=99.98 E-value=4.2e-31 Score=259.20 Aligned_cols=306 Identities=16% Similarity=0.165 Sum_probs=189.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcc----cCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT----QVPDYPMPDNYP 80 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 80 (433)
..++||+||||||+|++||..|++.|.+|+|||+. .+||+|.+.. |.|+..+..+.... ....+..+....
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~g----ciPsk~l~~~a~~~~~~~~~~~~g~~~~~~ 77 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTG----CVPTKTLIASARAAHLARRAAEYGVSVGGP 77 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceeccc----cCcHHHHHHHHHHHHHHHHHHhcCcccCcc
Confidence 35699999999999999999999999999999985 6899887653 33332111110000 000111110000
Q ss_pred CCCCHHHHHHHHHH-----------HHHHc-CCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 81 VYPNHSMMLDYLRS-----------YAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 81 ~~~~~~~~~~~l~~-----------~~~~~-~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
.......+.++.+. ..++. ++ .+..++.+. .+.+ +|+. ++.++.||+||+|||+ .|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~v~~g~~~~---~~~~--~v~v-~~~~~~~d~lViATGs--~p~~ 147 (463)
T PRK06370 78 VSVDFKAVMARKRRIRARSRHGSEQWLRGLEGV--DVFRGHARF---ESPN--TVRV-GGETLRAKRIFINTGA--RAAI 147 (463)
T ss_pred CccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCc--EEEEEEEEE---ccCC--EEEE-CcEEEEeCEEEEcCCC--CCCC
Confidence 01223333333322 22222 33 233343321 1122 3444 3457899999999998 8899
Q ss_pred CCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhch
Q psy2398 149 PNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGN 228 (433)
Q Consensus 149 p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~ 228 (433)
|+++|.....++++.+..... ..+++|+|||+|.+|+|+|..+++.+.+|+++.+.+. ++|... .
T Consensus 148 p~i~G~~~~~~~~~~~~~~~~-~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~-~l~~~~-------------~ 212 (463)
T PRK06370 148 PPIPGLDEVGYLTNETIFSLD-ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR-LLPRED-------------E 212 (463)
T ss_pred CCCCCCCcCceEcchHhhCcc-ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC-CCcccC-------------H
Confidence 999982222344444433322 2368999999999999999999999999999998764 222110 0
Q ss_pred hhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--Ce--EEe--c-C
Q psy2398 229 KFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--NI--VHF--V-D 301 (433)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~~--v~~--~-d 301 (433)
...+.+.+.+. ..++ ++.....+.++++ .. +.+ . +
T Consensus 213 ---------~~~~~l~~~l~----~~GV-------------------------~i~~~~~V~~i~~~~~~~~v~~~~~~~ 254 (463)
T PRK06370 213 ---------DVAAAVREILE----REGI-------------------------DVRLNAECIRVERDGDGIAVGLDCNGG 254 (463)
T ss_pred ---------HHHHHHHHHHH----hCCC-------------------------EEEeCCEEEEEEEcCCEEEEEEEeCCC
Confidence 11111111111 1111 2333445566642 22 333 2 3
Q ss_pred CceeeccEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhh
Q psy2398 302 DTHIEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 302 G~~~~~D~vi~atG~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g 378 (433)
+.++++|.||+|+|++|+...| +...+..+ .+.+.+++. +.++.|+||++|||.....+.+.|..||+.+|++|.+
T Consensus 255 ~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~-l~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 255 APEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQ-LRTTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLD 333 (463)
T ss_pred ceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcC-CcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhC
Confidence 4569999999999999998843 43444443 345666655 5789999999999987777788899999999999987
Q ss_pred h
Q psy2398 379 F 379 (433)
Q Consensus 379 ~ 379 (433)
.
T Consensus 334 ~ 334 (463)
T PRK06370 334 G 334 (463)
T ss_pred C
Confidence 5
No 21
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.98 E-value=7.4e-31 Score=255.06 Aligned_cols=287 Identities=15% Similarity=0.185 Sum_probs=191.9
Q ss_pred CcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCC-CCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPV-YPN 84 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 84 (433)
++|+|||||++|+.+|..|+++ +.+|++||+.+..+ +... .. |..... ...
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~--~~~~-----~l-------------------p~~~~~~~~~ 55 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS--FANC-----AL-------------------PYYIGEVVED 55 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc--cccC-----Cc-------------------chhhcCccCC
Confidence 4899999999999999999887 67999999987652 1100 00 000000 111
Q ss_pred HHHHHHH-HHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc-Cc--EEEeCEEEEccCCCCCCCCCCCCCCCCCcee
Q psy2398 85 HSMMLDY-LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN-GK--KKKYDFIAVCNGAQRVARYPNYSGYFSGEIL 160 (433)
Q Consensus 85 ~~~~~~~-l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~-g~--~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~ 160 (433)
..+...+ ...+.++.++ .++++++|++|+.+.+.+.+...+ +. .+.||+||+|||+ .|+.|++++ ..++
T Consensus 56 ~~~~~~~~~~~~~~~~~i--~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs--~~~~~~~~~---~~~~ 128 (438)
T PRK13512 56 RKYALAYTPEKFYDRKQI--TVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGA--SANSLGFES---DITF 128 (438)
T ss_pred HHHcccCCHHHHHHhCCC--EEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCC--CCCCCCCCC---CCeE
Confidence 1222221 1234455676 577889999999877766665532 22 3689999999998 777777654 1111
Q ss_pred ccCCCCCC-------CCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCc
Q psy2398 161 HSMDYKSP-------DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSK 233 (433)
Q Consensus 161 ~~~~~~~~-------~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~ 233 (433)
......+. ....+++++|||+|.+|+|+|..|++.+.+|+++.+.+.. ++.. +.
T Consensus 129 ~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l-~~~~-------------d~----- 189 (438)
T PRK13512 129 TLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKI-NKLM-------------DA----- 189 (438)
T ss_pred EecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc-chhc-------------CH-----
Confidence 11111110 1123689999999999999999999999999999987642 2211 01
Q ss_pred hHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCeEEecCCceeeccEEEEc
Q psy2398 234 EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYA 313 (433)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~~dG~~~~~D~vi~a 313 (433)
...+.+.+.+ ...++ ++.....++++++..+++++|+++++|.||+|
T Consensus 190 ----~~~~~l~~~l----~~~gI-------------------------~i~~~~~v~~i~~~~v~~~~g~~~~~D~vl~a 236 (438)
T PRK13512 190 ----DMNQPILDEL----DKREI-------------------------PYRLNEEIDAINGNEVTFKSGKVEHYDMIIEG 236 (438)
T ss_pred ----HHHHHHHHHH----HhcCC-------------------------EEEECCeEEEEeCCEEEECCCCEEEeCEEEEC
Confidence 1111111111 11111 33445677888777888989999999999999
Q ss_pred cCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEcccccc----------CChhhHHHHHHHHHHHHHhhhh
Q psy2398 314 TGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 314 tG~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~----------~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
+|++|+.++++...+..+ .+++.+++. +.++.|+||++|||+.. ....+.|..||+.+|+++.|..
T Consensus 237 ~G~~pn~~~l~~~gl~~~~~G~i~Vd~~-~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~ 313 (438)
T PRK13512 237 VGTHPNSKFIESSNIKLDDKGFIPVNDK-FETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGND 313 (438)
T ss_pred cCCCcChHHHHhcCcccCCCCcEEECCC-cccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCCC
Confidence 999999998876656553 456777655 46889999999999752 2345668899999999998853
No 22
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.98 E-value=1.8e-31 Score=247.54 Aligned_cols=302 Identities=19% Similarity=0.269 Sum_probs=208.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcC--CCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGN--INYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g--~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
+++|+|||||++|+.+|..|.+.. .+++++|+++.. . ++.+.. +-..+..+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h--l----------~~plL~---------------eva~g~l~ 55 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH--L----------FTPLLY---------------EVATGTLS 55 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc--c----------cchhhh---------------hhhcCCCC
Confidence 479999999999999999999974 899999998743 1 111110 01112333
Q ss_pred HHHHHHHHHHHHHHcC-CCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCC--ce
Q psy2398 85 HSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSG--EI 159 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g--~~ 159 (433)
..++..-++..+...+ + -....+|++|+.+.+ +|++.++..+.||++|+|+|+ .+..+.+|| ++.- ..
T Consensus 56 ~~~i~~p~~~~~~~~~~v---~~~~~~V~~ID~~~k--~V~~~~~~~i~YD~LVvalGs--~~~~fgi~G~~E~a~~lks 128 (405)
T COG1252 56 ESEIAIPLRALLRKSGNV---QFVQGEVTDIDRDAK--KVTLADLGEISYDYLVVALGS--ETNYFGIPGAAEYAFGLKT 128 (405)
T ss_pred hhheeccHHHHhcccCce---EEEEEEEEEEcccCC--EEEeCCCccccccEEEEecCC--cCCcCCCCCHHHhCCCCCC
Confidence 4455555555565443 3 233668999988555 566667667999999999999 889999998 2221 11
Q ss_pred ec-cCCC--------CCCCCCC----CCeEEEEcCCCCHHHHHHHHhccCC-------------cEEEEEecCceeeccc
Q psy2398 160 LH-SMDY--------KSPDQIR----NKRVLVVGAGNSGCDIAVDASHHSE-------------KVYHSTRRGYHYYPKF 213 (433)
Q Consensus 160 ~~-~~~~--------~~~~~~~----~~~v~VvG~G~sg~d~a~~l~~~~~-------------~V~~~~r~~~~~~p~~ 213 (433)
+. +..+ ...+... -.+++|+|||++|+|+|.+|..... +|+++.+.+. ++|.
T Consensus 129 ~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~-ILp~- 206 (405)
T COG1252 129 LEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPR-ILPM- 206 (405)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCch-hccC-
Confidence 10 1000 0111111 1379999999999999999987521 7889988775 3332
Q ss_pred CCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee
Q psy2398 214 IDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN 293 (433)
Q Consensus 214 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~ 293 (433)
+|+.++. ...+.+ ++.|+ ++..+..|++++
T Consensus 207 ------------~~~~l~~-----~a~~~L--------~~~GV-------------------------~v~l~~~Vt~v~ 236 (405)
T COG1252 207 ------------FPPKLSK-----YAERAL--------EKLGV-------------------------EVLLGTPVTEVT 236 (405)
T ss_pred ------------CCHHHHH-----HHHHHH--------HHCCC-------------------------EEEcCCceEEEC
Confidence 3333333 222221 22333 566688999999
Q ss_pred CCeEEecCCce-eeccEEEEccCCCCCCCCCCc-cccccc-CCccccccccccCCCCcEEEEcccccc------CChhhH
Q psy2398 294 GNIVHFVDDTH-IEVDTIIYATGYNRHFPFIDK-EKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA------AGLGDG 364 (433)
Q Consensus 294 ~~~v~~~dG~~-~~~D~vi~atG~~~~~~~l~~-~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~------~~~~~~ 364 (433)
.++|++++|.+ +++|.+|||+|.+++ +++.. ...+.+ .+++.+.+.+..+++|+||++|||+.. ++..+.
T Consensus 237 ~~~v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~ 315 (405)
T COG1252 237 PDGVTLKDGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQA 315 (405)
T ss_pred CCcEEEccCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHH
Confidence 99999999995 999999999999998 77664 234443 478889999999999999999999943 467789
Q ss_pred HHHHHHHHHHHHhhhh----cCCCcchhHHHHhhc
Q psy2398 365 LRLQGQFIRSYIQAFI----RKSKGYLKFLNAKKN 395 (433)
Q Consensus 365 a~~qa~~~a~~i~g~~----~lp~~~~~~~~m~~~ 395 (433)
|.+||+++|++|..+. ..|.+|.+...|...
T Consensus 316 A~Qqg~~~a~ni~~~l~g~~l~~f~y~~~Gtl~~l 350 (405)
T COG1252 316 AHQQGEYAAKNIKARLKGKPLKPFKYKDKGTLASL 350 (405)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcccceEEEEEc
Confidence 9999999999996554 456665554444433
No 23
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.98 E-value=1.7e-30 Score=254.88 Aligned_cols=308 Identities=19% Similarity=0.231 Sum_probs=188.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcc-c----CCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT-Q----VPDYPMPDNYP 80 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~ 80 (433)
.++||+||||||+|++||..|++.|.+|++||+. .+||+|.... |.|+..+.....+. . ...+.... .
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~g----ciPsk~l~~~~~~~~~~~~~~~~~gi~~--~ 75 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVG----CIPSKALLRNAELAHIFTKEAKTFGISG--E 75 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecCC----ccccHHHHhhHHHHHHHHHHHHhcCCCc--C
Confidence 3589999999999999999999999999999985 6899988763 33432211110000 0 00011100 0
Q ss_pred CCCCHHHHHHHHHHHHHHc--CCCcceEe-CcEEEEEEE-----eCCeEEEEEccC--cEEEeCEEEEccCCCCCCCCCC
Q psy2398 81 VYPNHSMMLDYLRSYAKKF--DVYNHSIF-NTEVINLEQ-----YEDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPN 150 (433)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~--~~~~~i~~-~~~V~~v~~-----~~~~~~v~~~~g--~~~~~d~vIvAtG~~s~p~~p~ 150 (433)
.......+.+..+...++. ++ +..+ ...|+.++. +.+.+.+...++ .++.||+||+|||+ .|..|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs--~p~~~- 150 (466)
T PRK07818 76 VTFDYGAAFDRSRKVAEGRVKGV--HFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGS--STRLL- 150 (466)
T ss_pred cccCHHHHHHHHHHHHHHHHHHH--HHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCC--CCCCC-
Confidence 1122233333333222211 11 0111 113333332 245566665554 36899999999998 66553
Q ss_pred CCC-CCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchh
Q psy2398 151 YSG-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNK 229 (433)
Q Consensus 151 i~g-~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~ 229 (433)
|| .+.+.++.+.+.... ...+++++|||+|.+|+|+|..+++.+.+|+++.+.+. ++|... .
T Consensus 151 -pg~~~~~~v~~~~~~~~~-~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~-~l~~~d-------------~- 213 (466)
T PRK07818 151 -PGTSLSENVVTYEEQILS-RELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR-ALPNED-------------A- 213 (466)
T ss_pred -CCCCCCCcEEchHHHhcc-ccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC-cCCccC-------------H-
Confidence 44 223334433322111 23468999999999999999999999999999998764 233210 0
Q ss_pred hcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC----eEEec--CCc
Q psy2398 230 FSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN----IVHFV--DDT 303 (433)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~----~v~~~--dG~ 303 (433)
...+.+.+.+. ..++ ++.....++++.+. .+.+. +|+
T Consensus 214 --------~~~~~l~~~l~----~~gV-------------------------~i~~~~~v~~i~~~~~~~~v~~~~~~g~ 256 (466)
T PRK07818 214 --------EVSKEIAKQYK----KLGV-------------------------KILTGTKVESIDDNGSKVTVTVSKKDGK 256 (466)
T ss_pred --------HHHHHHHHHHH----HCCC-------------------------EEEECCEEEEEEEeCCeEEEEEEecCCC
Confidence 11111111111 1111 33345556666432 23443 674
Q ss_pred --eeeccEEEEccCCCCCCCCC--Ccccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhh
Q psy2398 304 --HIEVDTIIYATGYNRHFPFI--DKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 304 --~~~~D~vi~atG~~~~~~~l--~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g 378 (433)
++++|.||+|+|++|+..++ +...+.. +.+.+.+++. +.++.|+||++||+.....+.+.|..||+.+|.+|.|
T Consensus 257 ~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~-~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g 335 (466)
T PRK07818 257 AQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDY-MRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAG 335 (466)
T ss_pred eEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCC-cccCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHcC
Confidence 68999999999999998864 3344444 3345666655 5789999999999987677888999999999999998
Q ss_pred hh
Q psy2398 379 FI 380 (433)
Q Consensus 379 ~~ 380 (433)
..
T Consensus 336 ~~ 337 (466)
T PRK07818 336 AE 337 (466)
T ss_pred CC
Confidence 54
No 24
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.97 E-value=5.4e-30 Score=255.20 Aligned_cols=284 Identities=18% Similarity=0.228 Sum_probs=199.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..+||+||||||+||+||..|++.|++|+|||+. .+||.+..... +..++.. .....
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~~---------------i~~~pg~-------~~~~~ 59 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITSE---------------VVNYPGI-------LNTTG 59 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEeccc---------------cccCCCC-------cCCCH
Confidence 5699999999999999999999999999999995 68887653200 0001110 12345
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCCceeccC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSM 163 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g~~~~~~ 163 (433)
.++.++++..++++++. + .+++|+.++.+++.+.+.+.++ .+.+++||+|||+ .|+.|+++| .+.+..++.+
T Consensus 60 ~~l~~~l~~~~~~~gv~--~-~~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa--~p~~~~ipG~~~~~~~~v~~~ 133 (555)
T TIGR03143 60 PELMQEMRQQAQDFGVK--F-LQAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGA--SPRKLGFPGEEEFTGRGVAYC 133 (555)
T ss_pred HHHHHHHHHHHHHcCCE--E-eccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCC--ccCCCCCCCHHHhCCceEEEE
Confidence 78889999889988873 4 4778999887666788887666 5899999999999 788899999 4566655555
Q ss_pred CCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHH
Q psy2398 164 DYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQV 243 (433)
Q Consensus 164 ~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 243 (433)
...+...+.+++|+|||+|.+|+|+|..|++.+.+|+++.|.+.+..+ . ...+.+
T Consensus 134 ~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~~----------------~---------~~~~~~ 188 (555)
T TIGR03143 134 ATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCA----------------K---------LIAEKV 188 (555)
T ss_pred eecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccccC----------------H---------HHHHHH
Confidence 555555567999999999999999999999999999999988642110 0 111111
Q ss_pred HHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCe----EE---ecCCcee----eccE---
Q psy2398 244 FKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNI----VH---FVDDTHI----EVDT--- 309 (433)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~----v~---~~dG~~~----~~D~--- 309 (433)
. ...++ .+.....|.++.+.. +. ..+|+.. ++|.
T Consensus 189 ~-------~~~gV-------------------------~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~ 236 (555)
T TIGR03143 189 K-------NHPKI-------------------------EVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTF 236 (555)
T ss_pred H-------hCCCc-------------------------EEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccce
Confidence 1 00111 233344555654321 22 2356543 3666
Q ss_pred -EEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEcccccc-CChhhHHHHHHHHHHHHHh
Q psy2398 310 -IIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQ 377 (433)
Q Consensus 310 -vi~atG~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~-~~~~~~a~~qa~~~a~~i~ 377 (433)
||+|+|++|+..+++. .+..+ ++++.++ ..+.++.|+||++||++.. ...+..|..||+.+|.++.
T Consensus 237 ~Vi~a~G~~Pn~~l~~~-~l~l~~~G~I~vd-~~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 237 GVFVFVGYAPSSELFKG-VVELDKRGYIPTN-EDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAE 305 (555)
T ss_pred EEEEEeCCCCChhHHhh-hcccCCCCeEEeC-CccccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHH
Confidence 9999999999998874 34443 4556555 4567899999999999743 2345568888888777763
No 25
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.97 E-value=1.4e-30 Score=255.09 Aligned_cols=307 Identities=17% Similarity=0.140 Sum_probs=190.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCC----cccCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKF----NTQVPDYPMPDNYPV 81 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 81 (433)
.++||+||||||+|+.+|..|++.|.+|+|+|+.+.+||+|.+.. |+|+..+..... ......+...... .
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~g----ciP~K~l~~~a~~~~~~~~~~~~g~~~~~-~ 77 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVG----CIPSKALLHVAKVIEEAKALAEHGIVFGE-P 77 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCC----cccHHHHHHHHHHHHHHhhhhhcCcccCC-C
Confidence 569999999999999999999999999999999878999987763 344322111000 0011111110000 0
Q ss_pred CCCHHHHHHHHHH-----------HHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC--cEEEeCEEEEccCCCCCCC-
Q psy2398 82 YPNHSMMLDYLRS-----------YAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRVAR- 147 (433)
Q Consensus 82 ~~~~~~~~~~l~~-----------~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g--~~~~~d~vIvAtG~~s~p~- 147 (433)
......+.++.+. ..+..++ .+..+ .+..+ +.+.+.|+..+| .++.||+||+|||+ .|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV--~~~~g-~a~~~--~~~~v~v~~~~g~~~~~~~d~lViATGs--~p~~ 150 (471)
T PRK06467 78 KIDIDKMRARKEKVVKQLTGGLAGMAKGRKV--TVVNG-LGKFT--GGNTLEVTGEDGKTTVIEFDNAIIAAGS--RPIQ 150 (471)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEc--cCCEEEEecCCCceEEEEcCEEEEeCCC--CCCC
Confidence 1222333333322 2333344 23322 22222 245566766565 46899999999998 665
Q ss_pred CCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhc
Q psy2398 148 YPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLG 227 (433)
Q Consensus 148 ~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p 227 (433)
.|.+++. ...++.+.+...... .+++++|||+|.+|+|+|..+++.|.+||++.+.+. ++|.. +
T Consensus 151 ~p~~~~~-~~~v~~~~~~~~~~~-~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~-il~~~-------------d 214 (471)
T PRK06467 151 LPFIPHD-DPRIWDSTDALELKE-VPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ-VIPAA-------------D 214 (471)
T ss_pred CCCCCCC-CCcEEChHHhhcccc-CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC-CCCcC-------------C
Confidence 4445541 112344433333322 358999999999999999999999999999998764 23321 0
Q ss_pred hhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee--CCe--EEecCC-
Q psy2398 228 NKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN--GNI--VHFVDD- 302 (433)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~--~~~--v~~~dG- 302 (433)
..+.. .+.+. +... + ++.....+++++ +.. +.+.++
T Consensus 215 ~~~~~-----~~~~~----l~~~-----v-------------------------~i~~~~~v~~i~~~~~~~~v~~~~~~ 255 (471)
T PRK06467 215 KDIVK-----VFTKR----IKKQ-----F-------------------------NIMLETKVTAVEAKEDGIYVTMEGKK 255 (471)
T ss_pred HHHHH-----HHHHH----Hhhc-----e-------------------------EEEcCCEEEEEEEcCCEEEEEEEeCC
Confidence 11111 11111 1100 0 233334445443 222 344432
Q ss_pred ---ceeeccEEEEccCCCCCCCCCCc--cccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHH
Q psy2398 303 ---THIEVDTIIYATGYNRHFPFIDK--EKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYI 376 (433)
Q Consensus 303 ---~~~~~D~vi~atG~~~~~~~l~~--~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i 376 (433)
+++++|.||+|+|++|+.+++.. ..+..+ .+++.+++ .+.++.|+||++|||...+...+.|..||+.+|.+|
T Consensus 256 ~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~-~~~t~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i 334 (471)
T PRK06467 256 APAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDK-QCRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVI 334 (471)
T ss_pred CcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCC-CcccCCCCEEEehhhcCCcccHHHHHHHHHHHHHHH
Confidence 35999999999999999987643 334443 34565554 457899999999999876678889999999999999
Q ss_pred hhhh
Q psy2398 377 QAFI 380 (433)
Q Consensus 377 ~g~~ 380 (433)
.|..
T Consensus 335 ~g~~ 338 (471)
T PRK06467 335 AGKK 338 (471)
T ss_pred cCCC
Confidence 8753
No 26
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.97 E-value=6.4e-30 Score=250.26 Aligned_cols=310 Identities=17% Similarity=0.166 Sum_probs=196.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCC-C---cccCCCCCCCCC--CC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPK-F---NTQVPDYPMPDN--YP 80 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~--~~ 80 (433)
|++|+|||||++|+.+|..++++|.+|+++|+. .+||+|.+.. |.|+..+.... . ......+..... ..
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~~g----ciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~ 75 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVLTD----CVPSKTLIATAEVRTELRRAAELGIRFIDDGE 75 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccccC----CcchHHHHHHHHHHHHHHHHHhCCcccccCcc
Confidence 358999999999999999999999999999986 4899998763 33332211110 0 000001111000 00
Q ss_pred CCCCHHHHH-----------HHHHHHHHHcCCCcceEeCcEEEEEE--EeCCeEEEEEccCc--EEEeCEEEEccCCCCC
Q psy2398 81 VYPNHSMML-----------DYLRSYAKKFDVYNHSIFNTEVINLE--QYEDIWEVELSNGK--KKKYDFIAVCNGAQRV 145 (433)
Q Consensus 81 ~~~~~~~~~-----------~~l~~~~~~~~~~~~i~~~~~V~~v~--~~~~~~~v~~~~g~--~~~~d~vIvAtG~~s~ 145 (433)
.......+. +.+...+++.++ ++.. .++..++ .+.+.+.|.+.+|. ++.||+||+|||+ .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~~~-g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs--~ 150 (466)
T PRK07845 76 ARVDLPAVNARVKALAAAQSADIRARLEREGV--RVIA-GRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGA--S 150 (466)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEE-EEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCC--C
Confidence 011122222 233344445555 2433 3444433 33567777776665 6899999999999 6
Q ss_pred CCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHh
Q psy2398 146 ARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQ 225 (433)
Q Consensus 146 p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~ 225 (433)
|..|+.++.....++++....+... .+++++|||+|.+|+|+|..|++.+.+|+++.+.+. ++|...
T Consensus 151 p~~~p~~~~~~~~v~~~~~~~~~~~-~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~-~l~~~d----------- 217 (466)
T PRK07845 151 PRILPTAEPDGERILTWRQLYDLDE-LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDR-VLPGED----------- 217 (466)
T ss_pred CCCCCCCCCCCceEEeehhhhcccc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc-CCCCCC-----------
Confidence 7766554421223444444433332 357999999999999999999999999999998764 223210
Q ss_pred hchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee--CC--eEEecC
Q psy2398 226 LGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN--GN--IVHFVD 301 (433)
Q Consensus 226 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~--~~--~v~~~d 301 (433)
. ...+.+.+.+. ..++ ++.....+.+++ +. .+.+.+
T Consensus 218 --~---------~~~~~l~~~L~----~~gV-------------------------~i~~~~~v~~v~~~~~~~~v~~~~ 257 (466)
T PRK07845 218 --A---------DAAEVLEEVFA----RRGM-------------------------TVLKRSRAESVERTGDGVVVTLTD 257 (466)
T ss_pred --H---------HHHHHHHHHHH----HCCc-------------------------EEEcCCEEEEEEEeCCEEEEEECC
Confidence 0 11111111111 1111 222334455553 22 355678
Q ss_pred CceeeccEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhh
Q psy2398 302 DTHIEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 302 G~~~~~D~vi~atG~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g 378 (433)
|+++++|.||+|+|++|+...+ +...+..+ .+++.+++. +.++.||||++||+.....+.+.|..||+.++.++.|
T Consensus 258 g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~-~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g 336 (466)
T PRK07845 258 GRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRV-SRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALG 336 (466)
T ss_pred CcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCC-cccCCCCEEEEeeccCCccchhHHHHHHHHHHHHHcC
Confidence 9999999999999999998864 44445543 455666654 4789999999999998777889999999999999987
Q ss_pred hh
Q psy2398 379 FI 380 (433)
Q Consensus 379 ~~ 380 (433)
..
T Consensus 337 ~~ 338 (466)
T PRK07845 337 EA 338 (466)
T ss_pred CC
Confidence 54
No 27
>KOG0405|consensus
Probab=99.97 E-value=4e-30 Score=225.08 Aligned_cols=315 Identities=19% Similarity=0.230 Sum_probs=217.7
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCC---cccCCCCCCCCCCC
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKF---NTQVPDYPMPDNYP 80 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 80 (433)
..+.+|.+|||||.+|+++|++.+++|.++.++|..-.+||+|.... ++-+...++.+.. +.+-.++.++.+..
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~G---CVPKKvm~~~a~~~~~~~da~~yG~~~~~~ 93 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVG---CVPKKVMWYAADYSEEMEDAKDYGFPINEE 93 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeec---cccceeEEehhhhhHHhhhhhhcCCccccc
Confidence 34579999999999999999999999999999999878999999873 2334445554433 22333444444322
Q ss_pred CCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEe-----CCeEEEEEccCcE--EEeCEEEEccCCCCCCCCCCCC
Q psy2398 81 VYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQY-----EDIWEVELSNGKK--KKYDFIAVCNGAQRVARYPNYS 152 (433)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~-----~~~~~v~~~~g~~--~~~d~vIvAtG~~s~p~~p~i~ 152 (433)
.--.+..+.+--.+|..++ ++.++..-+..|.-++-. ++...|...++.+ +++++++||||. .|.+|.||
T Consensus 94 ~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg--~p~~PnIp 171 (478)
T KOG0405|consen 94 GSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGG--RPIIPNIP 171 (478)
T ss_pred cCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCC--ccCCCCCC
Confidence 2223344444444444443 233333445555555532 5667777777643 789999999999 99999999
Q ss_pred CCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcC
Q psy2398 153 GYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS 232 (433)
Q Consensus 153 g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~ 232 (433)
| ...-+.|..+.+.+++ .|+++|||+|++|+|+|.-++..|.+++++.|....+ .
T Consensus 172 G--~E~gidSDgff~Lee~-Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL-R--------------------- 226 (478)
T KOG0405|consen 172 G--AELGIDSDGFFDLEEQ-PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL-R--------------------- 226 (478)
T ss_pred c--hhhccccccccchhhc-CceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh-c---------------------
Confidence 9 2233567777777776 6789999999999999999999999999999986411 1
Q ss_pred chHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceee----eC-CeEEecCCceeec
Q psy2398 233 KEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNL----NG-NIVHFVDDTHIEV 307 (433)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~----~~-~~v~~~dG~~~~~ 307 (433)
.+.+.+...+...++..++ +++....++++ ++ ..+....|+...+
T Consensus 227 -----~FD~~i~~~v~~~~~~~gi-------------------------nvh~~s~~~~v~K~~~g~~~~i~~~~~i~~v 276 (478)
T KOG0405|consen 227 -----GFDEMISDLVTEHLEGRGI-------------------------NVHKNSSVTKVIKTDDGLELVITSHGTIEDV 276 (478)
T ss_pred -----chhHHHHHHHHHHhhhcce-------------------------eecccccceeeeecCCCceEEEEeccccccc
Confidence 1222222122222222222 23323333333 22 2344556666779
Q ss_pred cEEEEccCCCCCCCCCCcccc--cccCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhh
Q psy2398 308 DTIIYATGYNRHFPFIDKEKL--EWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 308 D~vi~atG~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g 378 (433)
|.++||||++|+..-|..+.+ +.+.++....+.++.|+.|+||++||++.-..+.+.|.+.++.+|..+.|
T Consensus 277 d~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~ 349 (478)
T KOG0405|consen 277 DTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFG 349 (478)
T ss_pred cEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEeccccCcEecchHHHhhhhhHHHHhhc
Confidence 999999999999988776544 44556666667788999999999999998777888999999999999887
No 28
>PTZ00058 glutathione reductase; Provisional
Probab=99.97 E-value=2.4e-30 Score=254.96 Aligned_cols=306 Identities=17% Similarity=0.220 Sum_probs=190.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCccc----CCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQ----VPDYPMPDNYPV 81 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 81 (433)
..+||+|||||++|++||..+++.|.+|+|||+. .+||+|.+.. |.|+..+........ ...+..... .
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~G----CiPsK~l~~~a~~~~~~~~~~~~Gi~~~--~ 119 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVG----CVPKKIMFNAASIHDILENSRHYGFDTQ--F 119 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccC----CCCCchhhhhcccHHHHHHHHhcCCCcc--C
Confidence 4689999999999999999999999999999986 6999998873 344443332222111 111111100 0
Q ss_pred CCCHHHHH-----------HHHHHHHHHcCCCcceEeCc-------EEE--EEE--------EeCCeEEE------EEcc
Q psy2398 82 YPNHSMML-----------DYLRSYAKKFDVYNHSIFNT-------EVI--NLE--------QYEDIWEV------ELSN 127 (433)
Q Consensus 82 ~~~~~~~~-----------~~l~~~~~~~~~~~~i~~~~-------~V~--~v~--------~~~~~~~v------~~~~ 127 (433)
-.....+. +.+.+..++.++. +..++ +|. .++ .++++.+| ...+
T Consensus 120 ~~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 197 (561)
T PTZ00058 120 SFNLPLLVERRDKYIRRLNDIYRQNLKKDNVE--YFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDD 197 (561)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE--EEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCC
Confidence 11112222 2222333334442 22221 110 000 01222334 2345
Q ss_pred CcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 128 GKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 128 g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
+..++||+||+|||+ .|..|+++|. ..++++..+..... +++|+|||+|.+|+|+|..+.+.|.+||++.+++.
T Consensus 198 g~~i~ad~lVIATGS--~P~~P~IpG~--~~v~ts~~~~~l~~--pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 198 GQVIEGKNILIAVGN--KPIFPDVKGK--EFTISSDDFFKIKE--AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred CcEEECCEEEEecCC--CCCCCCCCCc--eeEEEHHHHhhccC--CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 667999999999998 8899999982 12344433333222 78999999999999999999999999999998764
Q ss_pred eeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecC
Q psy2398 208 HYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD 287 (433)
Q Consensus 208 ~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 287 (433)
++|... . ...+.+.+.+. ..++ ++....
T Consensus 272 -il~~~d-------------~---------~i~~~l~~~L~----~~GV-------------------------~i~~~~ 299 (561)
T PTZ00058 272 -LLRKFD-------------E---------TIINELENDMK----KNNI-------------------------NIITHA 299 (561)
T ss_pred -ccccCC-------------H---------HHHHHHHHHHH----HCCC-------------------------EEEeCC
Confidence 223210 1 11111111111 1111 233344
Q ss_pred CceeeeCC---e--EEecCC-ceeeccEEEEccCCCCCCCCCCcccc--cccCCccccccccccCCCCcEEEEccccc--
Q psy2398 288 DIKNLNGN---I--VHFVDD-THIEVDTIIYATGYNRHFPFIDKEKL--EWKLGIPDLFIHIAPRNLDNIFFFGFVNA-- 357 (433)
Q Consensus 288 ~v~~~~~~---~--v~~~dG-~~~~~D~vi~atG~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~p~i~~iG~~~~-- 357 (433)
.+.++++. . +.+.++ +++++|.|++|+|++|+..+|..+.. ..+.+.+.++.. +.|+.|+||++|||..
T Consensus 300 ~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G~I~VDe~-lqTs~p~IYA~GDv~~~~ 378 (561)
T PTZ00058 300 NVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVDDN-QRTSVKHIYAVGDCCMVK 378 (561)
T ss_pred EEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCccccceecCCCeEEECcC-CccCCCCEEEeEeccCcc
Confidence 45555421 2 334444 46999999999999999998865433 224455666554 5789999999999987
Q ss_pred --------------------------------cCChhhHHHHHHHHHHHHHhhh
Q psy2398 358 --------------------------------AAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 358 --------------------------------~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
...+.+.|..||+.+|.++.|.
T Consensus 379 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 379 KNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred ccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence 3566788999999999999885
No 29
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=2e-30 Score=254.69 Aligned_cols=307 Identities=20% Similarity=0.211 Sum_probs=189.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCC----CcccCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPK----FNTQVPDYPMPDNYPVY 82 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 82 (433)
++||+||||||+|+++|..|++.|.+|+|||+ ..+||+|.+.. |.|+..+.... ....++.+..... ...
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~g----c~psk~l~~~~~~~~~~~~~~~~gi~~~-~~~ 76 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVG----CIPSKALIAAAEAFHEAKHAEEFGIHAD-GPK 76 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccceeccc----eeeHHHHHHHHHHHHHHHHHHhcCCCcC-CCc
Confidence 48999999999999999999999999999999 67999998753 34432211111 0111111111111 123
Q ss_pred CCHHHHHHHHHHHHHHcCCCc--ceEeCcEEEEEEE---eCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCC---
Q psy2398 83 PNHSMMLDYLRSYAKKFDVYN--HSIFNTEVINLEQ---YEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY--- 154 (433)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~--~i~~~~~V~~v~~---~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~--- 154 (433)
....++.++++....++...- ...-...|.-+.. ..+.+.+.+ ++.++.||+||+|||+. .|++||.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v-~~~~~~~d~lIiATGs~----~p~ipg~~~~ 151 (460)
T PRK06292 77 IDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV-NGERIEAKNIVIATGSR----VPPIPGVWLI 151 (460)
T ss_pred cCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE-CcEEEEeCEEEEeCCCC----CCCCCCCccc
Confidence 456777777776666542210 0000111211111 012223444 55679999999999984 4455551
Q ss_pred CCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCch
Q psy2398 155 FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKE 234 (433)
Q Consensus 155 ~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~ 234 (433)
....++++.+.... ...+++++|||+|.+|+|+|..|.+.+.+|+++.|.+. ++|.. +.
T Consensus 152 ~~~~~~~~~~~~~~-~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~-~l~~~-------------d~------ 210 (460)
T PRK06292 152 LGDRLLTSDDAFEL-DKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDR-ILPLE-------------DP------ 210 (460)
T ss_pred CCCcEECchHHhCc-cccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC-cCcch-------------hH------
Confidence 12233333332222 23478999999999999999999999999999998764 22211 01
Q ss_pred HHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC---eEE--ecCC--ceeec
Q psy2398 235 ETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN---IVH--FVDD--THIEV 307 (433)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~---~v~--~~dG--~~~~~ 307 (433)
.+.+.+.+.+... + ++.....+.++++. .+. +.+| .++++
T Consensus 211 ---~~~~~~~~~l~~~-----I-------------------------~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~ 257 (460)
T PRK06292 211 ---EVSKQAQKILSKE-----F-------------------------KIKLGAKVTSVEKSGDEKVEELEKGGKTETIEA 257 (460)
T ss_pred ---HHHHHHHHHHhhc-----c-------------------------EEEcCCEEEEEEEcCCceEEEEEcCCceEEEEe
Confidence 1111111111100 0 23334455555421 344 2344 46899
Q ss_pred cEEEEccCCCCCCCCCC--ccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 308 DTIIYATGYNRHFPFID--KEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 308 D~vi~atG~~~~~~~l~--~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
|.||+|+|++|+.++|. ...+..+ .+.+.+++. +.++.|+||++|||...+...+.|..||+.+|.+|.+.
T Consensus 258 D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~-~~ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~~ 331 (460)
T PRK06292 258 DYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEH-TQTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGD 331 (460)
T ss_pred CEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCC-cccCCCCEEEEEecCCCccchhHHHHHHHHHHHHhcCC
Confidence 99999999999998643 3344443 345556554 47799999999999976677889999999999999874
No 30
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.97 E-value=1.7e-30 Score=253.65 Aligned_cols=312 Identities=16% Similarity=0.157 Sum_probs=189.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc-CCCeEEEccC--------CCCCCcccCCCCCCccccceEeecCCCc-c---cCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG-NINYDLYEME--------SDLGGVWNSQASCGRVYPSLHLISPKFN-T---QVPD 72 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~-g~~v~v~e~~--------~~~Gg~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~ 72 (433)
+.+||+||||||+|..+|..++++ |.+|++||+. ..+||+|.+.. |.|+..+..+... . ....
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~G----CiPsK~l~~~a~~~~~~~~~~~ 77 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVG----CVPKKLMVTGAQYMDTLRESAG 77 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcC----CccHHHHHHHHHHHHHHHHhhc
Confidence 569999999999999999999996 9999999973 46999999874 3443332221111 0 0111
Q ss_pred CCCCCC-CCCCCCHHHHHHHHHHHHHHc--CCCcceEeCcEEEEEEE-----eCCeEEEEEcc------CcEEEeCEEEE
Q psy2398 73 YPMPDN-YPVYPNHSMMLDYLRSYAKKF--DVYNHSIFNTEVINLEQ-----YEDIWEVELSN------GKKKKYDFIAV 138 (433)
Q Consensus 73 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~--~~~~~i~~~~~V~~v~~-----~~~~~~v~~~~------g~~~~~d~vIv 138 (433)
+..... ...-.....+.++.+...+.. +....+.-...|+-+.- +.+...|.... ...+.||+||+
T Consensus 78 ~gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lII 157 (486)
T TIGR01423 78 FGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILL 157 (486)
T ss_pred cCeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEE
Confidence 111000 000122333333333322221 00000000012222221 13434443211 23689999999
Q ss_pred ccCCCCCCCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhcc---CCcEEEEEecCceeecccCC
Q psy2398 139 CNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH---SEKVYHSTRRGYHYYPKFID 215 (433)
Q Consensus 139 AtG~~s~p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~---~~~V~~~~r~~~~~~p~~~~ 215 (433)
|||+ .|..|+++|. ..+..+.+..... ..+++++|||+|.+|+|+|..+... +.+|+++.+.+.. +|..
T Consensus 158 ATGs--~p~~p~i~G~--~~~~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i-l~~~-- 229 (486)
T TIGR01423 158 ATGS--WPQMLGIPGI--EHCISSNEAFYLD-EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI-LRGF-- 229 (486)
T ss_pred ecCC--CCCCCCCCCh--hheechhhhhccc-cCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc-cccc--
Confidence 9998 7899999981 1122222222222 2368999999999999999877654 8999999987642 2321
Q ss_pred CCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC-
Q psy2398 216 GKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG- 294 (433)
Q Consensus 216 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~- 294 (433)
+..+.. .+.+ .+. ..++ ++.....++++..
T Consensus 230 -----------d~~~~~-----~l~~----~L~----~~GI-------------------------~i~~~~~v~~i~~~ 260 (486)
T TIGR01423 230 -----------DSTLRK-----ELTK----QLR----ANGI-------------------------NIMTNENPAKVTLN 260 (486)
T ss_pred -----------CHHHHH-----HHHH----HHH----HcCC-------------------------EEEcCCEEEEEEEc
Confidence 111111 1111 111 1111 2333445556642
Q ss_pred ----CeEEecCCceeeccEEEEccCCCCCCCCCCc--ccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHH
Q psy2398 295 ----NIVHFVDDTHIEVDTIIYATGYNRHFPFIDK--EKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRL 367 (433)
Q Consensus 295 ----~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~--~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~ 367 (433)
..+.+.+|+++++|.||+|||++|+..++.. ..+.. +.+.+.+++.+ .|+.|+||++|||...+.+.+.|..
T Consensus 261 ~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l-~Ts~~~IyA~GDv~~~~~l~~~A~~ 339 (486)
T TIGR01423 261 ADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFS-RTNVPNIYAIGDVTDRVMLTPVAIN 339 (486)
T ss_pred CCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCC-cCCCCCEEEeeecCCCcccHHHHHH
Confidence 2466778889999999999999999987643 33444 33556666554 6899999999999987778889999
Q ss_pred HHHHHHHHHhhh
Q psy2398 368 QGQFIRSYIQAF 379 (433)
Q Consensus 368 qa~~~a~~i~g~ 379 (433)
|++.++.+|.|.
T Consensus 340 qG~~aa~ni~g~ 351 (486)
T TIGR01423 340 EGAAFVDTVFGN 351 (486)
T ss_pred HHHHHHHHHhCC
Confidence 999999999875
No 31
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.97 E-value=1.8e-30 Score=254.90 Aligned_cols=303 Identities=17% Similarity=0.160 Sum_probs=187.8
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCC---CCCCCCCCCCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVP---DYPMPDNYPVYPN 84 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 84 (433)
+||+||||||+|+++|..|+++|.+|+|+|+.. +||+|.+.. |.|+..+........+. .+...... ..+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~g----ciPsk~l~~~~~~~~~~~~~~~g~~~~~-~~~~ 74 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVG----CVPSKMLLRAAEVAHYARKPPFGGLAAT-VAVD 74 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeec----EEccHHHHHHHHHHHHhhccCcccccCC-CccC
Confidence 699999999999999999999999999999865 999987652 34433322111111100 01000000 0111
Q ss_pred H-------HHHHHHH-----HHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCc-EEEeCEEEEccCCCCCCCCCCC
Q psy2398 85 H-------SMMLDYL-----RSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK-KKKYDFIAVCNGAQRVARYPNY 151 (433)
Q Consensus 85 ~-------~~~~~~l-----~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~-~~~~d~vIvAtG~~s~p~~p~i 151 (433)
. +++..++ ....+++++. +..+ ++..+ +..+|++.++. .+.+|+||+|||+ .|..|++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g-~~~~~----~~~~v~v~~g~~~~~~~~lIiATGs--~p~~p~i 145 (463)
T TIGR02053 75 FGELLEGKREVVEELRHEKYEDVLSSYGVD--YLRG-RARFK----DPKTVKVDLGREVRGAKRFLIATGA--RPAIPPI 145 (463)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhCCcE--EEEE-EEEEc----cCCEEEEcCCeEEEEeCEEEEcCCC--CCCCCCC
Confidence 2 2222222 2233444542 3222 22221 22355555543 5789999999998 8899999
Q ss_pred CCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhc
Q psy2398 152 SGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFS 231 (433)
Q Consensus 152 ~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~ 231 (433)
+|.-...++++.+...... .+++++|||+|.+|+|+|..|.+.+.+|+++.+.+. ++|... .
T Consensus 146 ~G~~~~~~~~~~~~~~~~~-~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~-~l~~~d-------------~--- 207 (463)
T TIGR02053 146 PGLKEAGYLTSEEALALDR-IPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDR-LLPREE-------------P--- 207 (463)
T ss_pred CCcccCceECchhhhCccc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc-CCCccC-------------H---
Confidence 9821112444444333322 358999999999999999999999999999998864 333210 0
Q ss_pred CchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--C--eEEec---CCce
Q psy2398 232 SKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--N--IVHFV---DDTH 304 (433)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~--~v~~~---dG~~ 304 (433)
...+.+.+.+. ..++ ++.....|+++.. . .+.+. ++.+
T Consensus 208 ------~~~~~l~~~l~----~~gV-------------------------~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~ 252 (463)
T TIGR02053 208 ------EISAAVEEALA----EEGI-------------------------EVVTSAQVKAVSVRGGGKIITVEKPGGQGE 252 (463)
T ss_pred ------HHHHHHHHHHH----HcCC-------------------------EEEcCcEEEEEEEcCCEEEEEEEeCCCceE
Confidence 11111111111 1111 2223344555542 1 23332 2357
Q ss_pred eeccEEEEccCCCCCCCC--CCcccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 305 IEVDTIIYATGYNRHFPF--IDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 305 ~~~D~vi~atG~~~~~~~--l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
+++|.||+|+|++|+.+. ++...+.. +.+.+.+++. +.++.|+||++|||...+...+.|..||+.+|.++.+.
T Consensus 253 i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~Ts~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 253 VEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDET-LRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGG 329 (463)
T ss_pred EEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCC-ccCCCCCEEEeeecCCCcccHhHHHHHHHHHHHHhcCC
Confidence 999999999999999884 44444444 3455666654 57899999999999987777889999999999999875
No 32
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.97 E-value=8.5e-30 Score=248.56 Aligned_cols=298 Identities=17% Similarity=0.206 Sum_probs=191.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC-CCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCC-CCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES-DLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPV-YPN 84 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~-~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 84 (433)
.+||+||||||+|+++|..|+++|.+|+|||+.+ .+||+|.... |.+...+...... ...+.. ...
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~g----cip~k~l~~~~~~--------~~~~~~~~~~ 70 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIG----CIPTKTLVHDAQQ--------HTDFVRAIQR 70 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeecc----ccchHHHHHHhcc--------CCCHHHHHHH
Confidence 4899999999999999999999999999999976 4899987642 2332211110000 000000 001
Q ss_pred HHHHHHHHHH-----HHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCc-EEEeCEEEEccCCCCCCCCCCCCC-C-CC
Q psy2398 85 HSMMLDYLRS-----YAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK-KKKYDFIAVCNGAQRVARYPNYSG-Y-FS 156 (433)
Q Consensus 85 ~~~~~~~l~~-----~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~-~~~~d~vIvAtG~~s~p~~p~i~g-~-~~ 156 (433)
...+.++++. ..+..++ .+. ..++..++ .+.+.|.+.++. ++.||+||+|||+ .|..|+++| . +.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~gv--~~~-~g~~~~i~--~~~~~v~~~~g~~~~~~d~lviATGs--~p~~p~i~G~~~~~ 143 (441)
T PRK08010 71 KNEVVNFLRNKNFHNLADMPNI--DVI-DGQAEFIN--NHSLRVHRPEGNLEIHGEKIFINTGA--QTVVPPIPGITTTP 143 (441)
T ss_pred HHHHHHHHHHhHHHHHhhcCCc--EEE-EEEEEEec--CCEEEEEeCCCeEEEEeCEEEEcCCC--cCCCCCCCCccCCC
Confidence 1222233322 1111133 122 22344443 466778777764 6899999999999 888899998 2 33
Q ss_pred CceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHH
Q psy2398 157 GEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEET 236 (433)
Q Consensus 157 g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~ 236 (433)
+ ++++....... ..+++++|||+|.+|+|+|..|.+.+.+|+++.|.+. ++|... .
T Consensus 144 ~-v~~~~~~~~~~-~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~-~l~~~~-------------~-------- 199 (441)
T PRK08010 144 G-VYDSTGLLNLK-ELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASL-FLPRED-------------R-------- 199 (441)
T ss_pred C-EEChhHhhccc-ccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC-CCCCcC-------------H--------
Confidence 3 44444443332 3467999999999999999999999999999998764 333210 0
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--CeEE--ecCCceeeccEEEE
Q psy2398 237 MAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--NIVH--FVDDTHIEVDTIIY 312 (433)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~~v~--~~dG~~~~~D~vi~ 312 (433)
.+.+.+.+.+. ..++ ++.....+.+++. ..+. .++| ++++|.|++
T Consensus 200 -~~~~~l~~~l~----~~gV-------------------------~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~ 248 (441)
T PRK08010 200 -DIADNIATILR----DQGV-------------------------DIILNAHVERISHHENQVQVHSEHA-QLAVDALLI 248 (441)
T ss_pred -HHHHHHHHHHH----hCCC-------------------------EEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEE
Confidence 11111111111 1111 2333445666642 2333 3344 589999999
Q ss_pred ccCCCCCCCCCC--ccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 313 ATGYNRHFPFID--KEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 313 atG~~~~~~~l~--~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
|+|.+|+..++. ...+..+ .+++.++++ +.++.|+||++|||+......+.+..|++.++.++.|.
T Consensus 249 a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~-~~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g~ 317 (441)
T PRK08010 249 ASGRQPATASLHPENAGIAVNERGAIVVDKY-LHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGE 317 (441)
T ss_pred eecCCcCCCCcCchhcCcEECCCCcEEECCC-cccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 999999988754 2334443 456666655 47889999999999987778889999999999999874
No 33
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.97 E-value=3.8e-30 Score=248.99 Aligned_cols=290 Identities=19% Similarity=0.232 Sum_probs=194.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.+++|+|||||++|+.+|+.|...+.+|++||+++.. . |..+. +....+....
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~--~----------~~~~l---------------~~~~~g~~~~ 61 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM--L----------FTPLL---------------PQTTTGTLEF 61 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc--c----------hhhhH---------------HHhcccCCCh
Confidence 4679999999999999999998777899999987643 1 11000 0000111223
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEE--------ccCcEEEeCEEEEccCCCCCCCCCCCCC--CC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL--------SNGKKKKYDFIAVCNGAQRVARYPNYSG--YF 155 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~--------~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~ 155 (433)
.++...++..+..++. .+...+|+.|+.+++.+.+.. .++.++.||+||+|||+ .+..|++|| +.
T Consensus 62 ~~~~~~~~~~~~~~~~---~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs--~~~~~~ipG~~e~ 136 (424)
T PTZ00318 62 RSICEPVRPALAKLPN---RYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGA--RPNTFNIPGVEER 136 (424)
T ss_pred HHhHHHHHHHhccCCe---EEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCc--ccCCCCCCCHHHc
Confidence 3444445555555554 244678999998777666632 34567999999999999 788888888 11
Q ss_pred --CC-ceeccCCCC---------------CCC-CCCCCeEEEEcCCCCHHHHHHHHhcc--------------CCcEEEE
Q psy2398 156 --SG-EILHSMDYK---------------SPD-QIRNKRVLVVGAGNSGCDIAVDASHH--------------SEKVYHS 202 (433)
Q Consensus 156 --~g-~~~~~~~~~---------------~~~-~~~~~~v~VvG~G~sg~d~a~~l~~~--------------~~~V~~~ 202 (433)
.. .+-+...++ ..+ ....++++|||+|.+|+|+|.+|+.. +.+|+++
T Consensus 137 ~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv 216 (424)
T PTZ00318 137 AFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVL 216 (424)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEE
Confidence 11 010100000 000 11235899999999999999999862 6789999
Q ss_pred EecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCC
Q psy2398 203 TRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGD 282 (433)
Q Consensus 203 ~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (433)
++.+.. +|.. +..+.+ .+.+. +. ..++ +
T Consensus 217 ~~~~~l-l~~~-------------~~~~~~-----~~~~~----L~----~~gV-------------------------~ 244 (424)
T PTZ00318 217 EAGSEV-LGSF-------------DQALRK-----YGQRR----LR----RLGV-------------------------D 244 (424)
T ss_pred cCCCcc-cccC-------------CHHHHH-----HHHHH----HH----HCCC-------------------------E
Confidence 987642 2211 111111 11111 11 1112 3
Q ss_pred eeecCCceeeeCCeEEecCCceeeccEEEEccCCCCCCCCCCcccccc-cCCccccccccccCCCCcEEEEcccccc---
Q psy2398 283 ILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAA--- 358 (433)
Q Consensus 283 v~~~~~v~~~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~--- 358 (433)
+.....|.++.+..|.++||+++++|.+|||+|.+|+ +++....+.. +.|++.+++.+..+++||||++|||+..
T Consensus 245 v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~ 323 (424)
T PTZ00318 245 IRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEER 323 (424)
T ss_pred EEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCc-chhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCC
Confidence 4446678888888999999999999999999999998 6766544444 3467888877766899999999999963
Q ss_pred --CChhhHHHHHHHHHHHHHhhhh
Q psy2398 359 --AGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 359 --~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
+.....|..||+.+|++|.+..
T Consensus 324 ~~~~~~~~A~~qg~~~A~ni~~~l 347 (424)
T PTZ00318 324 PLPTLAQVASQQGVYLAKEFNNEL 347 (424)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHh
Confidence 3466789999999999997654
No 34
>PRK13748 putative mercuric reductase; Provisional
Probab=99.97 E-value=4.3e-30 Score=258.38 Aligned_cols=308 Identities=15% Similarity=0.133 Sum_probs=191.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcc----cCCC-CCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT----QVPD-YPMPDNYP 80 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~ 80 (433)
..+||+||||||+|+++|..|++.|.+|+|||+. .+||+|.+.. |+|+..+..+..+. ..+. ...+...+
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~g----ciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~ 171 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVG----CVPSKIMIRAAHIAHLRRESPFDGGIAATVP 171 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccC----ccccHHHHHHHHHHHHHhcccccCCccCCCC
Confidence 4589999999999999999999999999999997 7999998763 45544322111100 0000 01111111
Q ss_pred CCCCHHHHHHHHHHHHHHcC-------CCc--ceEe-CcEEEEEEEeCCeEEEEEccCc--EEEeCEEEEccCCCCCCCC
Q psy2398 81 VYPNHSMMLDYLRSYAKKFD-------VYN--HSIF-NTEVINLEQYEDIWEVELSNGK--KKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~-------~~~--~i~~-~~~V~~v~~~~~~~~v~~~~g~--~~~~d~vIvAtG~~s~p~~ 148 (433)
......+.++.+.....+. +.. .+.+ ..++..+ +.+.+.|++.++. .+.||+||+|||+ .|..
T Consensus 172 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~--~~~~~~v~~~~g~~~~~~~d~lviAtGs--~p~~ 246 (561)
T PRK13748 172 -TIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFK--DDQTLIVRLNDGGERVVAFDRCLIATGA--SPAV 246 (561)
T ss_pred -ccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEe--cCCEEEEEeCCCceEEEEcCEEEEcCCC--CCCC
Confidence 1233444444333332210 000 1111 1223322 2566778776653 5899999999998 8899
Q ss_pred CCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhch
Q psy2398 149 PNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGN 228 (433)
Q Consensus 149 p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~ 228 (433)
|+++|......+++.+.... ...+++++|||+|.+|+|+|..|++.+.+|+++.|.. ++++.. .
T Consensus 247 p~i~g~~~~~~~~~~~~~~~-~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~--~l~~~d-------------~ 310 (561)
T PRK13748 247 PPIPGLKETPYWTSTEALVS-DTIPERLAVIGSSVVALELAQAFARLGSKVTILARST--LFFRED-------------P 310 (561)
T ss_pred CCCCCCCccceEccHHHhhc-ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc--cccccC-------------H
Confidence 99998211122222221111 2346899999999999999999999999999999853 333210 0
Q ss_pred hhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee--CCe--EEecCCce
Q psy2398 229 KFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN--GNI--VHFVDDTH 304 (433)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~--~~~--v~~~dG~~ 304 (433)
.+.+.+.+.+. ..++ ++.....++++. +.. +.+.++ +
T Consensus 311 ---------~~~~~l~~~l~----~~gI-------------------------~i~~~~~v~~i~~~~~~~~v~~~~~-~ 351 (561)
T PRK13748 311 ---------AIGEAVTAAFR----AEGI-------------------------EVLEHTQASQVAHVDGEFVLTTGHG-E 351 (561)
T ss_pred ---------HHHHHHHHHHH----HCCC-------------------------EEEcCCEEEEEEecCCEEEEEecCC-e
Confidence 11111111111 1111 222334455553 222 233344 6
Q ss_pred eeccEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 305 IEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 305 ~~~D~vi~atG~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
+++|.||+|+|++|+..++ +...+..+ .+.+.+++ .+.++.||||++|||+..+...+.|..||+.++.+|.|.
T Consensus 352 i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~-~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 428 (561)
T PRK13748 352 LRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQ-GMRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG 428 (561)
T ss_pred EEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECC-CcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 9999999999999999875 33445443 34565555 457899999999999977777888999999999999875
No 35
>PRK07846 mycothione reductase; Reviewed
Probab=99.97 E-value=4.5e-30 Score=249.84 Aligned_cols=307 Identities=12% Similarity=0.087 Sum_probs=192.3
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCc-cc---CCCCCCCCCCCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFN-TQ---VPDYPMPDNYPVYP 83 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~ 83 (433)
+|++||||||+|..+|.. ..|.+|+++|+. .+||+|.+.. |.|+..+..+... .. .+.+...... .-.
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-~~GGtC~n~G----CiPsK~l~~~a~~~~~~~~~~~~g~~~~~-~~~ 73 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADKRIAIVEKG-TFGGTCLNVG----CIPTKMFVYAADVARTIREAARLGVDAEL-DGV 73 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCcccCcC----cchhHHHHHHHHHHHHHHHHHhCCccCCC-CcC
Confidence 899999999999998876 459999999984 6999998873 3443322211111 00 0111110000 112
Q ss_pred CHHHHHHHHHHHHHHcCCC-cceE-e-CcEEEEEEEe---CCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVY-NHSI-F-NTEVINLEQY---EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSG 157 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~-~~i~-~-~~~V~~v~~~---~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g 157 (433)
...++.++.+...+++.-. .... + ...|+-+... .+..+|++.+++.+.||+||+|||+ .|..|+++|....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs--~p~~p~i~g~~~~ 151 (451)
T PRK07846 74 RWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGS--RPVIPPVIADSGV 151 (451)
T ss_pred CHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCC--CCCCCCCCCcCCc
Confidence 4455566655554443110 0011 1 1112222111 2334666666778999999999998 8899999882111
Q ss_pred ceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHH
Q psy2398 158 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM 237 (433)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~ 237 (433)
.+..+.+..... ..+++++|||+|.+|+|+|..+++.|.+|+++.|++.. +|.. +..
T Consensus 152 ~~~~~~~~~~l~-~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l-l~~~-------------d~~-------- 208 (451)
T PRK07846 152 RYHTSDTIMRLP-ELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRL-LRHL-------------DDD-------- 208 (451)
T ss_pred cEEchHHHhhhh-hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc-cccc-------------CHH--------
Confidence 222222222222 23689999999999999999999999999999988642 2211 011
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--C--eEEecCCceeeccEEEEc
Q psy2398 238 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--N--IVHFVDDTHIEVDTIIYA 313 (433)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~--~v~~~dG~~~~~D~vi~a 313 (433)
..+.+.+... .++ ++.....+.++++ . .+.+.+|+++++|.||+|
T Consensus 209 -~~~~l~~l~~-----~~v-------------------------~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a 257 (451)
T PRK07846 209 -ISERFTELAS-----KRW-------------------------DVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVA 257 (451)
T ss_pred -HHHHHHHHHh-----cCe-------------------------EEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEE
Confidence 1111110000 001 2333445555542 2 356678889999999999
Q ss_pred cCCCCCCCCCCc--ccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 314 TGYNRHFPFIDK--EKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 314 tG~~~~~~~l~~--~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
||++|+.++++. ..+.. +.+.+.++++ +.++.|+||++||+.....+.+.|..||+.++++|.+.
T Consensus 258 ~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~-~~Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 325 (451)
T PRK07846 258 TGRVPNGDLLDAAAAGVDVDEDGRVVVDEY-QRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHP 325 (451)
T ss_pred ECCccCccccCchhcCceECCCCcEeECCC-cccCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcCC
Confidence 999999998753 34444 3455666655 46899999999999987778889999999999999865
No 36
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.97 E-value=9.6e-30 Score=249.00 Aligned_cols=305 Identities=17% Similarity=0.123 Sum_probs=185.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcc-c-----CCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT-Q-----VPDYPMPDNYP 80 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~ 80 (433)
++||+||||||+|++||..+++.|.+|+|+|+...+||+|.+.. |.|+..+....... . +..+.... ..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~g----ciPsK~l~~~~~~~~~~~~~~~~~~gi~~-~~ 77 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVG----CMPSKALLHASELYEAASGGEFAHLGIEV-KP 77 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCc----ccccHHHHHHhHHHHHHhhhhhhhcCccc-cC
Confidence 38999999999999999999999999999998778999987763 33433222111111 0 01111000 00
Q ss_pred CCCCHHHHHHHHHH-----------HHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCc--EEEeCEEEEccCCCCCCC
Q psy2398 81 VYPNHSMMLDYLRS-----------YAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK--KKKYDFIAVCNGAQRVAR 147 (433)
Q Consensus 81 ~~~~~~~~~~~l~~-----------~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~--~~~~d~vIvAtG~~s~p~ 147 (433)
-....++.+.... ..+..++ .+..+. . .+. +.+.+.|...++. ++.||+||+|||+ .|.
T Consensus 78 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g~-a-~~~-~~~~v~v~~~~g~~~~~~~d~lVIATGs--~p~ 149 (466)
T PRK06115 78 -TLNLAQMMKQKDESVEALTKGVEFLFRKNKV--DWIKGW-G-RLD-GVGKVVVKAEDGSETQLEAKDIVIATGS--EPT 149 (466)
T ss_pred -ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEE-E-EEc-cCCEEEEEcCCCceEEEEeCEEEEeCCC--CCC
Confidence 1112222222211 1222222 111111 1 111 1455666665653 5899999999998 453
Q ss_pred CCCCCC-CCCC-ceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHh
Q psy2398 148 YPNYSG-YFSG-EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQ 225 (433)
Q Consensus 148 ~p~i~g-~~~g-~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~ 225 (433)
++|| .+.+ .++++.+..... ..+++++|||+|.+|+|+|..+.+.+.+|+++.+.+. ++|.. +
T Consensus 150 --~ipg~~~~~~~~~~~~~~~~~~-~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~-il~~~----d------- 214 (466)
T PRK06115 150 --PLPGVTIDNQRIIDSTGALSLP-EVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR-ICPGT----D------- 214 (466)
T ss_pred --CCCCCCCCCCeEECHHHHhCCc-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC-CCCCC----C-------
Confidence 3455 2333 244443333322 2478999999999999999999999999999998764 23321 0
Q ss_pred hchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--CeE--Eec-
Q psy2398 226 LGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--NIV--HFV- 300 (433)
Q Consensus 226 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~~v--~~~- 300 (433)
. ...+.+.+.+. ..++ ++.....++++.+ ..+ .+.
T Consensus 215 --~---------~~~~~l~~~l~----~~gV-------------------------~i~~~~~V~~i~~~~~~v~v~~~~ 254 (466)
T PRK06115 215 --T---------ETAKTLQKALT----KQGM-------------------------KFKLGSKVTGATAGADGVSLTLEP 254 (466)
T ss_pred --H---------HHHHHHHHHHH----hcCC-------------------------EEEECcEEEEEEEcCCeEEEEEEE
Confidence 1 11111111111 1111 3333445666642 232 332
Q ss_pred --C--CceeeccEEEEccCCCCCCCCCCcc--cccccCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHH
Q psy2398 301 --D--DTHIEVDTIIYATGYNRHFPFIDKE--KLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRS 374 (433)
Q Consensus 301 --d--G~~~~~D~vi~atG~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~ 374 (433)
+ ++++++|.||+|+|++|+...|..+ .+..+..+..++ ..+.|+.|+||++|||+..+.+.+.|..||+.+|+
T Consensus 255 ~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd-~~~~Ts~~~IyA~GD~~~~~~la~~A~~~g~~aa~ 333 (466)
T PRK06115 255 AAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLAN-DHHRTSVPGVWVIGDVTSGPMLAHKAEDEAVACIE 333 (466)
T ss_pred cCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEEC-CCeecCCCCEEEeeecCCCcccHHHHHHHHHHHHH
Confidence 2 3468999999999999998876432 334433344444 45688999999999999877788999999999999
Q ss_pred HHhhhh
Q psy2398 375 YIQAFI 380 (433)
Q Consensus 375 ~i~g~~ 380 (433)
+|.+..
T Consensus 334 ~i~~~~ 339 (466)
T PRK06115 334 RIAGKA 339 (466)
T ss_pred HHcCCC
Confidence 998864
No 37
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=6.1e-30 Score=251.42 Aligned_cols=309 Identities=19% Similarity=0.181 Sum_probs=192.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCccc----CCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQ----VPDYPMPDNYPV 81 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 81 (433)
..+||+||||||+|+++|..|++.|.+|+++|+. .+||+|.... |.|+..+......+. ...+.......
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~g----ciPsk~l~~~a~~~~~~~~~~~~g~~~~~~- 76 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKG----CIPSKALLHSAEVFQTAKKASPFGISVSGP- 76 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCC----cCchHHHHHHHHHHHHHHHHHhcCccCCCC-
Confidence 5699999999999999999999999999999995 7999998763 344332221111000 00010000000
Q ss_pred CCCH-------HHHHHHH----HHHHHHcCCCcceEeCcEEEEEEEe-----CCeEEEEEccC--cEEEeCEEEEccCCC
Q psy2398 82 YPNH-------SMMLDYL----RSYAKKFDVYNHSIFNTEVINLEQY-----EDIWEVELSNG--KKKKYDFIAVCNGAQ 143 (433)
Q Consensus 82 ~~~~-------~~~~~~l----~~~~~~~~~~~~i~~~~~V~~v~~~-----~~~~~v~~~~g--~~~~~d~vIvAtG~~ 143 (433)
.... .++.+++ ....++.++ ++.. .++..++.+ ++.+.|.+.+| .++.||+||+|||+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~-g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs- 152 (472)
T PRK05976 77 ALDFAKVQERKDGIVDRLTKGVAALLKKGKI--DVFH-GIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGS- 152 (472)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEE-EEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCC-
Confidence 1111 2222222 233344455 2333 345555442 33778887776 46899999999998
Q ss_pred CCCCCCCCCCCCCCc-eeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHH
Q psy2398 144 RVARYPNYSGYFSGE-ILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQW 222 (433)
Q Consensus 144 s~p~~p~i~g~~~g~-~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~ 222 (433)
.|..|+.. .+.+. ++++.+...... .+++++|||+|.+|+|+|..|++.+.+|+++.|.+. ++|...
T Consensus 153 -~p~~~p~~-~~~~~~~~~~~~~~~~~~-~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~-il~~~~-------- 220 (472)
T PRK05976 153 -RPVELPGL-PFDGEYVISSDEALSLET-LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR-ILPTED-------- 220 (472)
T ss_pred -CCCCCCCC-CCCCceEEcchHhhCccc-cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc-cCCcCC--------
Confidence 66543211 12222 344443333222 368999999999999999999999999999998864 333210
Q ss_pred hHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee---CCeE--
Q psy2398 223 MLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN---GNIV-- 297 (433)
Q Consensus 223 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~---~~~v-- 297 (433)
. .+.+.+.+.+. ..++ ++.....+.++. ...+
T Consensus 221 -----~---------~~~~~l~~~l~----~~gI-------------------------~i~~~~~v~~i~~~~~~~~~~ 257 (472)
T PRK05976 221 -----A---------ELSKEVARLLK----KLGV-------------------------RVVTGAKVLGLTLKKDGGVLI 257 (472)
T ss_pred -----H---------HHHHHHHHHHH----hcCC-------------------------EEEeCcEEEEEEEecCCCEEE
Confidence 1 11111111111 1111 233344455554 2222
Q ss_pred -EecCCc--eeeccEEEEccCCCCCCCCCCccc--ccccCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHH
Q psy2398 298 -HFVDDT--HIEVDTIIYATGYNRHFPFIDKEK--LEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFI 372 (433)
Q Consensus 298 -~~~dG~--~~~~D~vi~atG~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~ 372 (433)
.+.+|+ ++++|.||+|+|.+|+.+.+..+. +....+.+.+++. +.++.|+||++||+...+.....|..||+.+
T Consensus 258 ~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~~-l~ts~~~IyAiGD~~~~~~~~~~A~~~g~~a 336 (472)
T PRK05976 258 VAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDF-CQTKERHIYAIGDVIGEPQLAHVAMAEGEMA 336 (472)
T ss_pred EEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECCC-cccCCCCEEEeeecCCCcccHHHHHHHHHHH
Confidence 235674 589999999999999988764332 2234455666554 4688999999999987667788999999999
Q ss_pred HHHHhhhh
Q psy2398 373 RSYIQAFI 380 (433)
Q Consensus 373 a~~i~g~~ 380 (433)
+.+|.|..
T Consensus 337 a~~i~g~~ 344 (472)
T PRK05976 337 AEHIAGKK 344 (472)
T ss_pred HHHHcCCC
Confidence 99998864
No 38
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.97 E-value=2e-30 Score=254.98 Aligned_cols=307 Identities=18% Similarity=0.145 Sum_probs=189.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC--------CCCCcccCCCCCCccccceEeecCCCccc-C----CC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES--------DLGGVWNSQASCGRVYPSLHLISPKFNTQ-V----PD 72 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~--------~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~ 72 (433)
.++||+||||||+|++||..|+++|.+|+|+|+.. .+||+|.+.. |+|+..+..+..+.. + ..
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~g----ciPsK~l~~~a~~~~~~~~~~~~ 79 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVG----CVPKKLMHYAANIGSIFHHDSQM 79 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceecccc----ccchHHHHHHHHHHHHHHhHHhc
Confidence 46899999999999999999999999999999631 4899987662 455432211100000 0 01
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCc---EEEEEEE---eCCeEEEEEcc---CcEEEeCEEEEccCCC
Q psy2398 73 YPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNT---EVINLEQ---YEDIWEVELSN---GKKKKYDFIAVCNGAQ 143 (433)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~---~V~~v~~---~~~~~~v~~~~---g~~~~~d~vIvAtG~~ 143 (433)
+.+.. ..-....++.++++..++.++.. +.... .|+-+.. ..+.++|.+.+ +..+.||+||+|||+
T Consensus 80 ~g~~~--~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs- 154 (499)
T PTZ00052 80 YGWKT--SSSFNWGKLVTTVQNHIRSLNFS--YRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGG- 154 (499)
T ss_pred CCCCC--CCCcCHHHHHHHHHHHHHHhhHH--HHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCC-
Confidence 11110 11234567777777776665321 22211 2222221 12223344322 346999999999998
Q ss_pred CCCCCCC-CCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHH
Q psy2398 144 RVARYPN-YSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQW 222 (433)
Q Consensus 144 s~p~~p~-i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~ 222 (433)
.|..|. ++|.- ...+.+.+...... .+++++|||+|.+|+|+|..|++.+.+||++.+.. .++..
T Consensus 155 -~p~~p~~i~G~~-~~~~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~--~l~~~--------- 220 (499)
T PTZ00052 155 -RPSIPEDVPGAK-EYSITSDDIFSLSK-DPGKTLIVGASYIGLETAGFLNELGFDVTVAVRSI--PLRGF--------- 220 (499)
T ss_pred -CCCCCCCCCCcc-ceeecHHHHhhhhc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc--ccccC---------
Confidence 788874 88711 11222222222212 35799999999999999999999999999998742 22321
Q ss_pred hHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC----CeEE
Q psy2398 223 MLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG----NIVH 298 (433)
Q Consensus 223 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~----~~v~ 298 (433)
+..+.. .+.+ .+. ..++ ++.....+.++.+ ..+.
T Consensus 221 ----d~~~~~-----~l~~----~l~----~~GV-------------------------~i~~~~~v~~v~~~~~~~~v~ 258 (499)
T PTZ00052 221 ----DRQCSE-----KVVE----YMK----EQGT-------------------------LFLEGVVPINIEKMDDKIKVL 258 (499)
T ss_pred ----CHHHHH-----HHHH----HHH----HcCC-------------------------EEEcCCeEEEEEEcCCeEEEE
Confidence 011111 1111 111 1111 2222333344431 2456
Q ss_pred ecCCceeeccEEEEccCCCCCCCCCCc--cccccc-CCccccccccccCCCCcEEEEccccc-cCChhhHHHHHHHHHHH
Q psy2398 299 FVDDTHIEVDTIIYATGYNRHFPFIDK--EKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNA-AAGLGDGLRLQGQFIRS 374 (433)
Q Consensus 299 ~~dG~~~~~D~vi~atG~~~~~~~l~~--~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~-~~~~~~~a~~qa~~~a~ 374 (433)
+.+|+++++|.||+|+|++|+..+|.. ..+..+ .+.+...+. .++.|+||++|||.. .+.+.+.|..||+.+|.
T Consensus 259 ~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~--~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ 336 (499)
T PTZ00052 259 FSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND--CTNIPNIFAVGDVVEGRPELTPVAIKAGILLAR 336 (499)
T ss_pred ECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC--cCCCCCEEEEEEecCCCcccHHHHHHHHHHHHH
Confidence 778988999999999999999998753 334443 344444444 789999999999985 45678899999999999
Q ss_pred HHhhh
Q psy2398 375 YIQAF 379 (433)
Q Consensus 375 ~i~g~ 379 (433)
+|.+.
T Consensus 337 ni~g~ 341 (499)
T PTZ00052 337 RLFKQ 341 (499)
T ss_pred HHhCC
Confidence 99875
No 39
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.97 E-value=4.3e-30 Score=245.65 Aligned_cols=285 Identities=18% Similarity=0.220 Sum_probs=189.4
Q ss_pred CcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
++|+|||||++|+.+|..|++. +.+|+|+++.+.. . |....+ +.........
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~----~--------y~~~~l--------------~~~~~~~~~~ 56 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD----E--------YNKPDL--------------SHVFSQGQRA 56 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC----C--------cCcCcC--------------cHHHhCCCCH
Confidence 5999999999999999999886 4589999987632 0 110000 0000011122
Q ss_pred HHHHH-HHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCC
Q psy2398 86 SMMLD-YLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMD 164 (433)
Q Consensus 86 ~~~~~-~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~ 164 (433)
.++.. ...++++++++ .++++++|++++.+.. .+++ ++..+.||+||+|||+ .|..|+++|.-. +++...
T Consensus 57 ~~~~~~~~~~~~~~~gv--~~~~~~~V~~id~~~~--~v~~-~~~~~~yd~LVlATG~--~~~~p~i~G~~~--v~~~~~ 127 (377)
T PRK04965 57 DDLTRQSAGEFAEQFNL--RLFPHTWVTDIDAEAQ--VVKS-QGNQWQYDKLVLATGA--SAFVPPIPGREL--MLTLNS 127 (377)
T ss_pred HHhhcCCHHHHHHhCCC--EEECCCEEEEEECCCC--EEEE-CCeEEeCCEEEECCCC--CCCCCCCCCCce--EEEECC
Confidence 33333 24556677787 5778899999987543 5555 4557999999999998 788899998211 222211
Q ss_pred CCCC-----CCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHH
Q psy2398 165 YKSP-----DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY 239 (433)
Q Consensus 165 ~~~~-----~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 239 (433)
..+. ....+++++|||+|.+|+|+|..|.+.+.+|+++.+.+.. +++. ++..+.. .+
T Consensus 128 ~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~-l~~~------------~~~~~~~-----~l 189 (377)
T PRK04965 128 QQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASL-LASL------------MPPEVSS-----RL 189 (377)
T ss_pred HHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcc-cchh------------CCHHHHH-----HH
Confidence 1111 1124789999999999999999999999999999987642 2211 1111111 11
Q ss_pred HHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC----eEEecCCceeeccEEEEccC
Q psy2398 240 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN----IVHFVDDTHIEVDTIIYATG 315 (433)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~----~v~~~dG~~~~~D~vi~atG 315 (433)
.+.+. ..++ .+.....++++... .+.+.+|+++++|.||+|+|
T Consensus 190 ~~~l~--------~~gV-------------------------~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G 236 (377)
T PRK04965 190 QHRLT--------EMGV-------------------------HLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAG 236 (377)
T ss_pred HHHHH--------hCCC-------------------------EEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcC
Confidence 11111 1111 22334456666432 36788999999999999999
Q ss_pred CCCCCCCCCcccccccCCccccccccccCCCCcEEEEccccccC----ChhhHHHHHHHHHHHHHhhhh
Q psy2398 316 YNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA----GLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 316 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~----~~~~~a~~qa~~~a~~i~g~~ 380 (433)
++|+..+++...+..+. ++.+++ .+.++.||||++|||+... +.+..+..||+.+|++|.|..
T Consensus 237 ~~p~~~l~~~~gl~~~~-gi~vd~-~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~ 303 (377)
T PRK04965 237 LRPNTALARRAGLAVNR-GIVVDS-YLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQN 303 (377)
T ss_pred CCcchHHHHHCCCCcCC-CEEECC-CcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCCC
Confidence 99998887655555544 355544 4578899999999998642 345668899999999998864
No 40
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.97 E-value=4.9e-30 Score=251.08 Aligned_cols=291 Identities=18% Similarity=0.210 Sum_probs=190.5
Q ss_pred cEEEECCChHHHHHHHHHHhcC--CCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGN--INYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g--~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
+|+|||||++|+++|..|++++ .+|+|||+++.++ |... ..+ .+. . ..+....
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~~-----~~~--------------~~~-~---~~~~~~~ 56 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGAC-----GLP--------------YFV-G---GFFDDPN 56 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eecC-----CCc--------------eEe-c---cccCCHH
Confidence 7999999999999999999875 5899999987652 1100 000 000 0 0011223
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc-cCcEEE--eCEEEEccCCCCCCCCCCCCCCCCCceeccC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS-NGKKKK--YDFIAVCNGAQRVARYPNYSGYFSGEILHSM 163 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~-~g~~~~--~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~ 163 (433)
++..+..+.+++.++ ++.++++|+.|+.+++.+.+... ++..+. ||+||+|||+ .|..|+++|.-...+.+..
T Consensus 57 ~~~~~~~~~~~~~gv--~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~--~~~~~~i~g~~~~~v~~~~ 132 (444)
T PRK09564 57 TMIARTPEEFIKSGI--DVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGA--RPIIPPIKNINLENVYTLK 132 (444)
T ss_pred HhhcCCHHHHHHCCC--eEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCC--CCCCCCCCCcCCCCEEEEC
Confidence 333333444556677 47789999999887776666542 244566 9999999998 7888888882112333333
Q ss_pred CCCCCC-------CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHH
Q psy2398 164 DYKSPD-------QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEET 236 (433)
Q Consensus 164 ~~~~~~-------~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~ 236 (433)
.+.+.. ...+++|+|||+|.+|+|+|..+.+.+.+|+++.+.+.. ++. .+..
T Consensus 133 ~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~-l~~----------------~~~~---- 191 (444)
T PRK09564 133 SMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRI-LPD----------------SFDK---- 191 (444)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCccc-Cch----------------hcCH----
Confidence 221111 234789999999999999999999999999999887642 221 1100
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCe---EEecCCceeeccEEEEc
Q psy2398 237 MAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNI---VHFVDDTHIEVDTIIYA 313 (433)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~---v~~~dG~~~~~D~vi~a 313 (433)
.+.+.+.+.+. ..++ ++.....+.++.+.. ....++.++++|.+|+|
T Consensus 192 -~~~~~l~~~l~----~~gI-------------------------~v~~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a 241 (444)
T PRK09564 192 -EITDVMEEELR----ENGV-------------------------ELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVA 241 (444)
T ss_pred -HHHHHHHHHHH----HCCC-------------------------EEEcCCEEEEEecCCcEEEEEeCCCEEEcCEEEEC
Confidence 11111111111 1111 233344555554321 22345567999999999
Q ss_pred cCCCCCCCCCCcccccc-cCCccccccccccCCCCcEEEEcccccc----------CChhhHHHHHHHHHHHHHhhhh
Q psy2398 314 TGYNRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 314 tG~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~----------~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
+|++|+.++++...+.. +.+++.++..+ .++.||||++|||+.. ...++.|..||+.+|++|.|..
T Consensus 242 ~G~~p~~~~l~~~gl~~~~~g~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~ 318 (444)
T PRK09564 242 TGVKPNTEFLEDTGLKTLKNGAIIVDEYG-ETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRH 318 (444)
T ss_pred cCCCcCHHHHHhcCccccCCCCEEECCCc-ccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCC
Confidence 99999998888666654 34567666654 6789999999999853 2456789999999999998864
No 41
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.97 E-value=4.8e-30 Score=255.91 Aligned_cols=316 Identities=17% Similarity=0.163 Sum_probs=190.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccC-CCCCCcccCCCCCCccccceEeecCCCc------------ccCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEME-SDLGGVWNSQASCGRVYPSLHLISPKFN------------TQVP 71 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~-~~~Gg~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 71 (433)
...|||+|||||++|+.+|..+++.|.+|+|||+. ..+||+|.+..+ .|+..+...... +...
T Consensus 114 ~~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GC----iPsK~l~~~a~~~~~~~~~~~~~~~Gi~ 189 (659)
T PTZ00153 114 DEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGC----IPSKALLYATGKYRELKNLAKLYTYGIY 189 (659)
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCC----cchHHHHHHHHHHHHHHhccccccCCee
Confidence 44689999999999999999999999999999974 369999988743 332221111100 0000
Q ss_pred --CCC------CCCC----CCCCCCHHHHHHHHHHHHHHcC--CCc-----ceEeCcEEEEEEEe----CCeEEEEE-cc
Q psy2398 72 --DYP------MPDN----YPVYPNHSMMLDYLRSYAKKFD--VYN-----HSIFNTEVINLEQY----EDIWEVEL-SN 127 (433)
Q Consensus 72 --~~~------~~~~----~~~~~~~~~~~~~l~~~~~~~~--~~~-----~i~~~~~V~~v~~~----~~~~~v~~-~~ 127 (433)
.++ .+.. ...-.....+.++.+...+++. +.. .+...++...+... .+..+|.. .+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~~ 269 (659)
T PTZ00153 190 TNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKS 269 (659)
T ss_pred eccccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEccC
Confidence 000 0000 0011245556666655554431 100 01111222223221 11112332 35
Q ss_pred CcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 128 GKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 128 g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
++++.||+||+|||+ .|..|++++.....++++.+...... .+++|+|||+|.+|+|+|..+...|.+||++.+.+.
T Consensus 270 g~~i~ad~lIIATGS--~P~~P~~~~~~~~~V~ts~d~~~l~~-lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 270 GKEFKVKNIIIATGS--TPNIPDNIEVDQKSVFTSDTAVKLEG-LQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred CEEEECCEEEEcCCC--CCCCCCCCCCCCCcEEehHHhhhhhh-cCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 567999999999998 88888765522223444433322222 367999999999999999999999999999998875
Q ss_pred eeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecC
Q psy2398 208 HYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD 287 (433)
Q Consensus 208 ~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 287 (433)
++|... ..+.. .+.+.+. ...++ ++....
T Consensus 347 -ll~~~d-------------~eis~-----~l~~~ll-------~~~GV-------------------------~I~~~~ 375 (659)
T PTZ00153 347 -LLPLLD-------------ADVAK-----YFERVFL-------KSKPV-------------------------RVHLNT 375 (659)
T ss_pred -ccccCC-------------HHHHH-----HHHHHHh-------hcCCc-------------------------EEEcCC
Confidence 223110 11111 1111110 00111 222334
Q ss_pred CceeeeCC----eEE--ecC-------C--------ceeeccEEEEccCCCCCCCCCCc--ccccccCCccccccccccC
Q psy2398 288 DIKNLNGN----IVH--FVD-------D--------THIEVDTIIYATGYNRHFPFIDK--EKLEWKLGIPDLFIHIAPR 344 (433)
Q Consensus 288 ~v~~~~~~----~v~--~~d-------G--------~~~~~D~vi~atG~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~ 344 (433)
.++++++. .+. +.+ + +++++|.||+|||++|++.+|.. ..+..+.+++.+++++ .+
T Consensus 376 ~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~l-qT 454 (659)
T PTZ00153 376 LIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHL-RV 454 (659)
T ss_pred EEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccCCEEeECCCC-Cc
Confidence 45555321 122 221 1 36899999999999999998643 3344445566666654 44
Q ss_pred C------CCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 345 N------LDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 345 ~------~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
+ +|+||++|||...+.+.+.|..||+.++++|.|.
T Consensus 455 s~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 455 LREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGK 495 (659)
T ss_pred CCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCC
Confidence 4 6999999999876778899999999999999886
No 42
>PLN02546 glutathione reductase
Probab=99.97 E-value=3.1e-30 Score=254.36 Aligned_cols=304 Identities=14% Similarity=0.131 Sum_probs=188.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEcc---------CCCCCCcccCCCCCCccccceEeecCCCc-c---cCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEM---------ESDLGGVWNSQASCGRVYPSLHLISPKFN-T---QVPDY 73 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~---------~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~ 73 (433)
.|||+|||||++|+.+|..++++|.+|+|+|+ ...+||+|.+.. |.|+..+...... . ....+
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~G----CiPsK~l~~aa~~~~~~~~~~~~ 154 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRG----CVPKKLLVYASKYSHEFEESRGF 154 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcc----hHHHHHHHHHHHHHHHHHhhhhc
Confidence 48999999999999999999999999999996 245899999874 4444433221111 0 00111
Q ss_pred CCCCCCCCCCCHH-----------HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCC
Q psy2398 74 PMPDNYPVYPNHS-----------MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 142 (433)
Q Consensus 74 ~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~ 142 (433)
............. .+.+++....++.++ .+.. .+++.++. + +|.+ +|+.+.||+||+|||+
T Consensus 155 g~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV--~~i~-G~a~~vd~--~--~V~v-~G~~~~~D~LVIATGs 226 (558)
T PLN02546 155 GWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGV--TLIE-GRGKIVDP--H--TVDV-DGKLYTARNILIAVGG 226 (558)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEE-eEEEEccC--C--EEEE-CCEEEECCEEEEeCCC
Confidence 1100000011111 223333333444444 2222 23333332 2 3444 4667999999999998
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHH
Q psy2398 143 QRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQW 222 (433)
Q Consensus 143 ~s~p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~ 222 (433)
.|..|+++|. ..++++.+.... ...+++|+|||+|.+|+|+|..|+..+.+|+++.+.+. +++..
T Consensus 227 --~p~~P~IpG~--~~v~~~~~~l~~-~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~-il~~~--------- 291 (558)
T PLN02546 227 --RPFIPDIPGI--EHAIDSDAALDL-PSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK-VLRGF--------- 291 (558)
T ss_pred --CCCCCCCCCh--hhccCHHHHHhc-cccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc-ccccc---------
Confidence 8899999981 112222222211 12478999999999999999999999999999998764 22211
Q ss_pred hHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee---CCe--E
Q psy2398 223 MLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN---GNI--V 297 (433)
Q Consensus 223 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~---~~~--v 297 (433)
+..+.. .+.+. +. ..++ ++.....+.++. +.. +
T Consensus 292 ----d~~~~~-----~l~~~----L~----~~GV-------------------------~i~~~~~v~~i~~~~~g~v~v 329 (558)
T PLN02546 292 ----DEEVRD-----FVAEQ----MS----LRGI-------------------------EFHTEESPQAIIKSADGSLSL 329 (558)
T ss_pred ----CHHHHH-----HHHHH----HH----HCCc-------------------------EEEeCCEEEEEEEcCCCEEEE
Confidence 011111 11111 11 1111 222334455553 222 2
Q ss_pred EecCCceeeccEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHH
Q psy2398 298 HFVDDTHIEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRS 374 (433)
Q Consensus 298 ~~~dG~~~~~D~vi~atG~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~ 374 (433)
.+.+++...+|.||+|+|++|+..+| +...+..+ ++++.++++ +.++.|+||++|||+....+.+.|..|++.+|.
T Consensus 330 ~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~-l~Ts~p~IYAaGDv~~~~~l~~~A~~~g~~~a~ 408 (558)
T PLN02546 330 KTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEY-SRTSVPSIWAVGDVTDRINLTPVALMEGGALAK 408 (558)
T ss_pred EECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCC-ceeCCCCEEEeeccCCCcccHHHHHHHHHHHHH
Confidence 33455545689999999999999875 43445553 355666654 478999999999999877788899999999999
Q ss_pred HHhhhh
Q psy2398 375 YIQAFI 380 (433)
Q Consensus 375 ~i~g~~ 380 (433)
++.|..
T Consensus 409 ~i~g~~ 414 (558)
T PLN02546 409 TLFGNE 414 (558)
T ss_pred HHcCCC
Confidence 998853
No 43
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=1.1e-29 Score=249.32 Aligned_cols=310 Identities=17% Similarity=0.163 Sum_probs=189.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEcc------CCCCCCcccCCCCCCccccceEeec-CCCcccC----CCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEM------ESDLGGVWNSQASCGRVYPSLHLIS-PKFNTQV----PDYP 74 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~------~~~~Gg~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~ 74 (433)
..+||+||||||+|++||.++++.|.+|+|+|+ ...+||+|.+.. |.|+..+.. ......+ ..+.
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~g----c~P~k~l~~~a~~~~~~~~~~~~~G 78 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVG----CIPSKALLASSEEFENAGHHFADHG 78 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcccccc----ccHHHHHHHHHHHHHHHHhhHHhcC
Confidence 468999999999999999999999999999998 357899997763 344322111 1111100 1111
Q ss_pred CCCCCCCCCCHHHHHH-----------HHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc--cCcEEEeCEEEEccC
Q psy2398 75 MPDNYPVYPNHSMMLD-----------YLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS--NGKKKKYDFIAVCNG 141 (433)
Q Consensus 75 ~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~--~g~~~~~d~vIvAtG 141 (433)
...... -.....+.+ -.....+..++ .+. ..++..++.+++.++|.+. ++.+++||+||+|||
T Consensus 79 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~-~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATG 154 (475)
T PRK06327 79 IHVDGV-KIDVAKMIARKDKVVKKMTGGIEGLFKKNKI--TVL-KGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATG 154 (475)
T ss_pred ccCCCC-ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEE-EEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCC
Confidence 110000 011222222 22223333344 122 3345555544456667654 345799999999999
Q ss_pred CCCCCCCCCCCCCCCCceeccCC-CCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChh
Q psy2398 142 AQRVARYPNYSGYFSGEILHSMD-YKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTP 220 (433)
Q Consensus 142 ~~s~p~~p~i~g~~~g~~~~~~~-~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~ 220 (433)
+ .|+.|+..+ +.+..++.+. .... ...+++|+|||+|.+|+|+|..+.+.+.+|+++.+++.. +|.. +
T Consensus 155 s--~p~~~p~~~-~~~~~~~~~~~~~~~-~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~-l~~~----d-- 223 (475)
T PRK06327 155 S--EPRHLPGVP-FDNKIILDNTGALNF-TEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF-LAAA----D-- 223 (475)
T ss_pred C--CCCCCCCCC-CCCceEECcHHHhcc-cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCcc-CCcC----C--
Confidence 8 665432221 2333233222 2222 234689999999999999999999999999999987642 2211 0
Q ss_pred HHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--C--e
Q psy2398 221 QWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--N--I 296 (433)
Q Consensus 221 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~--~ 296 (433)
. .+.+.+.+.+. ..++ ++.....|.+++. . .
T Consensus 224 -------~---------~~~~~~~~~l~----~~gi-------------------------~i~~~~~v~~i~~~~~~v~ 258 (475)
T PRK06327 224 -------E---------QVAKEAAKAFT----KQGL-------------------------DIHLGVKIGEIKTGGKGVS 258 (475)
T ss_pred -------H---------HHHHHHHHHHH----HcCc-------------------------EEEeCcEEEEEEEcCCEEE
Confidence 1 11111111111 0111 3333455666642 2 2
Q ss_pred EEecC--C--ceeeccEEEEccCCCCCCCCCCc--ccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHH
Q psy2398 297 VHFVD--D--THIEVDTIIYATGYNRHFPFIDK--EKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQG 369 (433)
Q Consensus 297 v~~~d--G--~~~~~D~vi~atG~~~~~~~l~~--~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa 369 (433)
+.+.+ | .++++|.||+|+|++|+.+++.. ..+.. ..+.+.+++. +.++.|+||++|||...+...+.|..|+
T Consensus 259 v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~-~~Ts~~~VyA~GD~~~~~~~~~~A~~~G 337 (475)
T PRK06327 259 VAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDH-CRTNVPNVYAIGDVVRGPMLAHKAEEEG 337 (475)
T ss_pred EEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCC-CccCCCCEEEEEeccCCcchHHHHHHHH
Confidence 44444 3 46899999999999999986543 23333 3355666654 4788999999999987667788999999
Q ss_pred HHHHHHHhhhh
Q psy2398 370 QFIRSYIQAFI 380 (433)
Q Consensus 370 ~~~a~~i~g~~ 380 (433)
+.+|.++.|..
T Consensus 338 ~~aa~~i~g~~ 348 (475)
T PRK06327 338 VAVAERIAGQK 348 (475)
T ss_pred HHHHHHHcCCC
Confidence 99999998754
No 44
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.97 E-value=2.3e-29 Score=247.43 Aligned_cols=305 Identities=19% Similarity=0.162 Sum_probs=190.3
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCccc----CCCCCCCCCCCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQ----VPDYPMPDNYPVYP 83 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 83 (433)
+||+|||||++|+++|..|++.|.+|+|+|+ +.+||+|.... |+|+..+........ ...+...... ...
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~g----c~Psk~l~~~~~~~~~~~~~~~~g~~~~~-~~~ 75 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVG----CIPTKALLHSAEVYDEIKHAKDYGIEVEN-VSV 75 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecC----ccchHHHHHHhhHHHHHHHHHhcCCCCCC-CcC
Confidence 8999999999999999999999999999999 78999988652 344432222111110 1111110000 112
Q ss_pred CHHHHHHHHHH-----------HHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC-cEEEeCEEEEccCCCCCCCCCCC
Q psy2398 84 NHSMMLDYLRS-----------YAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-KKKKYDFIAVCNGAQRVARYPNY 151 (433)
Q Consensus 84 ~~~~~~~~l~~-----------~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g-~~~~~d~vIvAtG~~s~p~~p~i 151 (433)
+...+.+..+. ..+..++ .+..+ ++..+ +.+.+.+...++ .++.||+||+|||+ .|+.|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g-~~~~~--~~~~~~v~~~~g~~~~~~d~lVlAtG~--~p~~~~~ 148 (461)
T TIGR01350 76 DWEKMQKRKNKVVKKLVGGVKGLLKKNKV--TVIKG-EAKFL--DPGTVLVTGENGEETLTAKNIIIATGS--RPRSLPG 148 (461)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEc--cCCEEEEecCCCcEEEEeCEEEEcCCC--CCCCCCC
Confidence 22333332222 2233343 12222 22222 246667766554 46999999999998 7777776
Q ss_pred C-CCCCCc-eeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchh
Q psy2398 152 S-GYFSGE-ILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNK 229 (433)
Q Consensus 152 ~-g~~~g~-~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~ 229 (433)
+ + +.+. +.++.+.... ...+++++|||+|.+|+|+|..+.+.+.+|+++.|.+.. +|.. ..
T Consensus 149 ~~~-~~~~~~~~~~~~~~~-~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~-l~~~-------------~~- 211 (461)
T TIGR01350 149 PFD-FDGEVVITSTGALNL-KEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI-LPGE-------------DA- 211 (461)
T ss_pred CCC-CCCceEEcchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC-CCCC-------------CH-
Confidence 5 3 1222 3333222222 224689999999999999999999999999999988642 2211 01
Q ss_pred hcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee--CCeE--EecCC--c
Q psy2398 230 FSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN--GNIV--HFVDD--T 303 (433)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~--~~~v--~~~dG--~ 303 (433)
.+.+.+.+.+. ..++ ++.....+.+++ +..+ .+.+| .
T Consensus 212 --------~~~~~~~~~l~----~~gi-------------------------~i~~~~~v~~i~~~~~~v~v~~~~g~~~ 254 (461)
T TIGR01350 212 --------EVSKVVAKALK----KKGV-------------------------KILTNTKVTAVEKNDDQVVYENKGGETE 254 (461)
T ss_pred --------HHHHHHHHHHH----HcCC-------------------------EEEeCCEEEEEEEeCCEEEEEEeCCcEE
Confidence 11111111111 0111 233345566553 3333 34567 4
Q ss_pred eeeccEEEEccCCCCCCC--CCCcccccccC-CccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhhh
Q psy2398 304 HIEVDTIIYATGYNRHFP--FIDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 304 ~~~~D~vi~atG~~~~~~--~l~~~~~~~~~-~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
++++|.||+|+|++|+.+ +++...+..+. +.+.+++ .+.++.|+||++||+...+.....|..||+.+|.++.++.
T Consensus 255 ~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~-~l~t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (461)
T TIGR01350 255 TLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDE-YMRTNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKE 333 (461)
T ss_pred EEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCC-CcccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 799999999999999988 45544444433 4566654 4577899999999998766778899999999999998764
No 45
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.97 E-value=1e-29 Score=244.34 Aligned_cols=289 Identities=16% Similarity=0.150 Sum_probs=185.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC--CeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+|+|||||++|++||..|++.|. +|+++++.+... +..+ ..++....- .... .....
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~----y~r~----------~l~~~~~~~---~~~~--~~~~~ 63 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP----YERP----------PLSKSMLLE---DSPQ--LQQVL 63 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC----CCCC----------CCCHHHHCC---CCcc--ccccC
Confidence 3689999999999999999999876 799999876441 1100 000000000 0000 00000
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMD 164 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~ 164 (433)
. .++....++ .++.++.|..++.+. ..|++.+|..+.||+||+|||+ .|+.|++++.....+.....
T Consensus 64 ~-------~~~~~~~~i--~~~~g~~V~~id~~~--~~v~~~~g~~~~yd~LViATGs--~~~~~p~~~~~~~~v~~~~~ 130 (396)
T PRK09754 64 P-------ANWWQENNV--HLHSGVTIKTLGRDT--RELVLTNGESWHWDQLFIATGA--AARPLPLLDALGERCFTLRH 130 (396)
T ss_pred C-------HHHHHHCCC--EEEcCCEEEEEECCC--CEEEECCCCEEEcCEEEEccCC--CCCCCCCCCcCCCCEEecCC
Confidence 1 122334566 477788999998743 4566777888999999999999 66766665522222222111
Q ss_pred CCCC-----CCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHH
Q psy2398 165 YKSP-----DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY 239 (433)
Q Consensus 165 ~~~~-----~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 239 (433)
..+. ....+++++|||+|.+|+|+|..|.+.+.+|+++.+.+.. +++. ++..+.. .+
T Consensus 131 ~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~-l~~~------------~~~~~~~-----~l 192 (396)
T PRK09754 131 AGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATV-MGRN------------APPPVQR-----YL 192 (396)
T ss_pred HHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc-hhhh------------cCHHHHH-----HH
Confidence 1111 1124789999999999999999999999999999987642 1211 0111111 11
Q ss_pred HHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC-C--eEEecCCceeeccEEEEccCC
Q psy2398 240 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG-N--IVHFVDDTHIEVDTIIYATGY 316 (433)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~-~--~v~~~dG~~~~~D~vi~atG~ 316 (433)
.+. +. ..++ ++.....++++.. . .+.+.+|+++++|.||+|+|.
T Consensus 193 ~~~----l~----~~GV-------------------------~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 193 LQR----HQ----QAGV-------------------------RILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGI 239 (396)
T ss_pred HHH----HH----HCCC-------------------------EEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCC
Confidence 111 11 1111 2333455666643 2 356789999999999999999
Q ss_pred CCCCCCCCcccccccCCccccccccccCCCCcEEEEccccccC---------ChhhHHHHHHHHHHHHHhhhh
Q psy2398 317 NRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA---------GLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 317 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~---------~~~~~a~~qa~~~a~~i~g~~ 380 (433)
+|+..++....+..+ +++.++.. +.++.|+||++|||+..+ ..++.|..||+.+|++|.|..
T Consensus 240 ~pn~~l~~~~gl~~~-~gi~vd~~-~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~ 310 (396)
T PRK09754 240 SANDQLAREANLDTA-NGIVIDEA-CRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLP 310 (396)
T ss_pred ChhhHHHHhcCCCcC-CCEEECCC-CccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCC
Confidence 999877765555443 45555544 578899999999998421 246789999999999998864
No 46
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.97 E-value=5.7e-29 Score=242.52 Aligned_cols=294 Identities=17% Similarity=0.174 Sum_probs=184.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC-CCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD-LGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~-~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.+||+||||||+|++||..|++.|.+|++||+.+. +||+|.... |.|+..+...... ....
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~g----ciP~k~~~~~~~~--------------~~~~ 64 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIG----CIPTKTLLVAAEK--------------NLSF 64 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCc----cccchHhhhhhhc--------------CCCH
Confidence 48999999999999999999999999999999864 699876542 2222221111100 0111
Q ss_pred HHHHHHHH-----------HHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc-CcEEEeCEEEEccCCCCCCCCCCCCC
Q psy2398 86 SMMLDYLR-----------SYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN-GKKKKYDFIAVCNGAQRVARYPNYSG 153 (433)
Q Consensus 86 ~~~~~~l~-----------~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~-g~~~~~d~vIvAtG~~s~p~~p~i~g 153 (433)
.++.++.+ +...+.++ .+..+ ++..+ ++....++..+ ..++.||+||+|||+ .|+.|+++|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~gV--~~~~g-~~~~~--~~~~v~v~~~~~~~~~~~d~vViATGs--~~~~p~i~G 137 (438)
T PRK07251 65 EQVMATKNTVTSRLRGKNYAMLAGSGV--DLYDA-EAHFV--SNKVIEVQAGDEKIELTAETIVINTGA--VSNVLPIPG 137 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEc--cCCEEEEeeCCCcEEEEcCEEEEeCCC--CCCCCCCCC
Confidence 22222211 22233333 12222 12111 13444444322 246899999999999 788889998
Q ss_pred CC-CCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcC
Q psy2398 154 YF-SGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS 232 (433)
Q Consensus 154 ~~-~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~ 232 (433)
.. ...++++..+.... ..+++|+|||+|.+|+|+|..+++.+.+|+++.|.+.. +|+.. ..+..
T Consensus 138 ~~~~~~v~~~~~~~~~~-~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~-l~~~~-------------~~~~~ 202 (438)
T PRK07251 138 LADSKHVYDSTGIQSLE-TLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI-LPREE-------------PSVAA 202 (438)
T ss_pred cCCCCcEEchHHHhcch-hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc-CCCCC-------------HHHHH
Confidence 21 12344444333332 23689999999999999999999999999999987642 23210 01100
Q ss_pred chHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--CeE-EecCCceeeccE
Q psy2398 233 KEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--NIV-HFVDDTHIEVDT 309 (433)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~~v-~~~dG~~~~~D~ 309 (433)
.+.+ .+. ..++ ++.....+.+++. ..+ ...+|+++++|.
T Consensus 203 -----~~~~----~l~----~~GI-------------------------~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~ 244 (438)
T PRK07251 203 -----LAKQ----YME----EDGI-------------------------TFLLNAHTTEVKNDGDQVLVVTEDETYRFDA 244 (438)
T ss_pred -----HHHH----HHH----HcCC-------------------------EEEcCCEEEEEEecCCEEEEEECCeEEEcCE
Confidence 1111 111 0111 2223344555542 233 335677899999
Q ss_pred EEEccCCCCCCCCCCc--ccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 310 IIYATGYNRHFPFIDK--EKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 310 vi~atG~~~~~~~l~~--~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
||+|||++|+.+.+.. ..+.. ..+.+.+++. +.++.|+||++|||...+...+.+..|++.++.++.+.
T Consensus 245 viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~-~~t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~~ 316 (438)
T PRK07251 245 LLYATGRKPNTEPLGLENTDIELTERGAIKVDDY-CQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGD 316 (438)
T ss_pred EEEeeCCCCCcccCCchhcCcEECCCCcEEECCC-cccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 9999999999887643 23333 3355666654 57889999999999876677788999999999998765
No 47
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.97 E-value=1.9e-29 Score=246.88 Aligned_cols=306 Identities=17% Similarity=0.129 Sum_probs=184.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC--------CCCCcccCCCCCCccccceEeecCCCccc----CCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES--------DLGGVWNSQASCGRVYPSLHLISPKFNTQ----VPDYP 74 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~--------~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 74 (433)
.+||+|||||++|+.+|..+++.|.+|+++|+.. .+||+|.+.. |.|+..+........ ...+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~G----CiPsK~l~~~a~~~~~~~~~~~~g 77 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVG----CIPKKLMHQAALLGQALKDSRNYG 77 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccC----cCchhHHHHHHHHHHHHhhhhhcC
Confidence 4899999999999999999999999999999731 4899998863 455443222211100 01111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHH-----------cCCCcceEeCcEEEEEEEeCCeEEEEEccC--cEEEeCEEEEccC
Q psy2398 75 MPDNYPVYPNHSMMLDYLRSYAKK-----------FDVYNHSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNG 141 (433)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g--~~~~~d~vIvAtG 141 (433)
+............+.++.++..++ .++. +. .-...-+ +.+...|+..++ .++.||+||+|||
T Consensus 78 ~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~--~i-~G~a~f~--~~~~v~v~~~~g~~~~~~~d~lVIATG 152 (484)
T TIGR01438 78 WNVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVN--YE-NAYAEFV--DKHRIKATNKKGKEKIYSAERFLIATG 152 (484)
T ss_pred cccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE--EE-EEEEEEc--CCCEEEEeccCCCceEEEeCEEEEecC
Confidence 100000012233333333333222 2221 11 1111111 134455544343 3689999999999
Q ss_pred CCCCCCCCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhH
Q psy2398 142 AQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQ 221 (433)
Q Consensus 142 ~~s~p~~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~ 221 (433)
+ .|..|++||.- ...+++.+...... ..++++|||+|.+|+|+|..|++.+.+|+++.|. . ++|...
T Consensus 153 s--~p~~p~ipG~~-~~~~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~-~l~~~d------- 219 (484)
T TIGR01438 153 E--RPRYPGIPGAK-ELCITSDDLFSLPY-CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-I-LLRGFD------- 219 (484)
T ss_pred C--CCCCCCCCCcc-ceeecHHHhhcccc-cCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-c-cccccC-------
Confidence 8 88999999821 11223322322222 3568999999999999999999999999999874 2 333210
Q ss_pred HhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee---C-CeE
Q psy2398 222 WMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN---G-NIV 297 (433)
Q Consensus 222 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~---~-~~v 297 (433)
..+.. .+.+ .+. ..++ ++.....+.++. + ..+
T Consensus 220 ------~~~~~-----~l~~----~L~----~~gV-------------------------~i~~~~~v~~v~~~~~~~~v 255 (484)
T TIGR01438 220 ------QDCAN-----KVGE----HME----EHGV-------------------------KFKRQFVPIKVEQIEAKVKV 255 (484)
T ss_pred ------HHHHH-----HHHH----HHH----HcCC-------------------------EEEeCceEEEEEEcCCeEEE
Confidence 11111 1111 111 1111 222233334443 1 235
Q ss_pred EecCCc---eeeccEEEEccCCCCCCCCCC--ccccccc--CCccccccccccCCCCcEEEEccccc-cCChhhHHHHHH
Q psy2398 298 HFVDDT---HIEVDTIIYATGYNRHFPFID--KEKLEWK--LGIPDLFIHIAPRNLDNIFFFGFVNA-AAGLGDGLRLQG 369 (433)
Q Consensus 298 ~~~dG~---~~~~D~vi~atG~~~~~~~l~--~~~~~~~--~~~~~~~~~~~~~~~p~i~~iG~~~~-~~~~~~~a~~qa 369 (433)
.+++|. ++++|.||+|+|++|+..+|. ...+..+ .+.+.+++ .+.|+.|+||++|||.. ...+.+.|..||
T Consensus 256 ~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~-~~~Ts~p~IyA~GDv~~~~~~l~~~A~~~g 334 (484)
T TIGR01438 256 TFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADE-EEQTNVPYIYAVGDILEDKQELTPVAIQAG 334 (484)
T ss_pred EEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCC-CcccCCCCEEEEEEecCCCccchHHHHHHH
Confidence 566663 699999999999999998864 3334443 24455544 56789999999999985 356778899999
Q ss_pred HHHHHHHhhh
Q psy2398 370 QFIRSYIQAF 379 (433)
Q Consensus 370 ~~~a~~i~g~ 379 (433)
+.++++|.+.
T Consensus 335 ~~aa~~i~~~ 344 (484)
T TIGR01438 335 RLLAQRLFSG 344 (484)
T ss_pred HHHHHHHhcC
Confidence 9999999874
No 48
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.97 E-value=2.4e-29 Score=258.58 Aligned_cols=287 Identities=17% Similarity=0.185 Sum_probs=193.7
Q ss_pred CcEEEECCChHHHHHHHHHHhc----CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEG----NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~----g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
++|+|||+|++|+.+|..|++. +++|+||++.+.++ |....+.. . + .. .
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~------------Y~r~~L~~--~---~---------~~-~ 56 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA------------YDRVHLSS--Y---F---------SH-H 56 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc------------ccCCcchH--h---H---------cC-C
Confidence 5899999999999999999864 47999999987642 11111110 0 0 00 1
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCceecc
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHS 162 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~~ 162 (433)
...++......+.++.++ +++.++.|+.|+++ ...|++.+|..+.||+||+|||+ .|..|+++| ...+ ++..
T Consensus 57 ~~~~l~~~~~~~~~~~gI--~~~~g~~V~~Id~~--~~~V~~~~G~~i~yD~LVIATGs--~p~~p~ipG~~~~~-v~~~ 129 (847)
T PRK14989 57 TAEELSLVREGFYEKHGI--KVLVGERAITINRQ--EKVIHSSAGRTVFYDKLIMATGS--YPWIPPIKGSETQD-CFVY 129 (847)
T ss_pred CHHHccCCCHHHHHhCCC--EEEcCCEEEEEeCC--CcEEEECCCcEEECCEEEECCCC--CcCCCCCCCCCCCC-eEEE
Confidence 122333333344556677 57888899999874 34677778888999999999998 889999998 3222 2211
Q ss_pred CCCCCCC-----CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHH
Q psy2398 163 MDYKSPD-----QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM 237 (433)
Q Consensus 163 ~~~~~~~-----~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~ 237 (433)
....+.. ...+++++|||+|.+|+|+|..|.+.+.+|+++++.+.. +|+. +..
T Consensus 130 rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l-l~~~----------------ld~----- 187 (847)
T PRK14989 130 RTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML-MAEQ----------------LDQ----- 187 (847)
T ss_pred CCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc-hhhh----------------cCH-----
Confidence 1111111 124689999999999999999999999999999987642 2211 111
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC------CeEEecCCceeeccEEE
Q psy2398 238 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG------NIVHFVDDTHIEVDTII 311 (433)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~------~~v~~~dG~~~~~D~vi 311 (433)
...+.+.+.+ +..++ ++.....++++.+ ..+.++||+++++|.||
T Consensus 188 ~~~~~l~~~L----~~~GV-------------------------~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv 238 (847)
T PRK14989 188 MGGEQLRRKI----ESMGV-------------------------RVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIV 238 (847)
T ss_pred HHHHHHHHHH----HHCCC-------------------------EEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEE
Confidence 1111111111 11122 2333445566532 24678999999999999
Q ss_pred EccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEccccccC----ChhhHHHHHHHHHHHHHhhhh
Q psy2398 312 YATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAA----GLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 312 ~atG~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~----~~~~~a~~qa~~~a~~i~g~~ 380 (433)
+|+|++|+..++....+... ++++.+++ .+.++.|+||++|||+... +++..+..||+.+|.+|.|..
T Consensus 239 ~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~-~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~ 311 (847)
T PRK14989 239 FSTGIRPQDKLATQCGLAVAPRGGIVIND-SCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSE 311 (847)
T ss_pred ECCCcccCchHHhhcCccCCCCCcEEECC-CCcCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCC
Confidence 99999999888766666553 45666665 4578899999999999642 356778999999999999864
No 49
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.97 E-value=2e-29 Score=259.75 Aligned_cols=285 Identities=17% Similarity=0.158 Sum_probs=191.6
Q ss_pred EEEECCChHHHHHHHHHHhc---CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 10 LCIIGGGPLGIGLGRELSEG---NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 10 v~IIGaG~~Gl~~a~~l~~~---g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
|+|||||++|+.+|.+|++. +++|+|||+.+..+ |....+. ....+.....
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~------------y~r~~L~--------------~~l~g~~~~~ 54 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN------------YNRILLS--------------SVLQGEADLD 54 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC------------ccccccc--------------HHHCCCCCHH
Confidence 68999999999999999875 46999999987652 1110000 0000111222
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCceeccCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDY 165 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~~~~~ 165 (433)
++.....++.++.++ +++++++|+.|+.+ .+.|++.+|.++.||+||+|||+ .|..|++|| ...+ +......
T Consensus 55 ~l~~~~~~~~~~~gv--~~~~g~~V~~Id~~--~k~V~~~~g~~~~yD~LVlATGs--~p~~p~ipG~~~~~-v~~~rt~ 127 (785)
T TIGR02374 55 DITLNSKDWYEKHGI--TLYTGETVIQIDTD--QKQVITDAGRTLSYDKLILATGS--YPFILPIPGADKKG-VYVFRTI 127 (785)
T ss_pred HccCCCHHHHHHCCC--EEEcCCeEEEEECC--CCEEEECCCcEeeCCEEEECCCC--CcCCCCCCCCCCCC-EEEeCCH
Confidence 332223344556677 58889999999874 35677888888999999999998 889999998 3332 2221111
Q ss_pred CCCC-----CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHH
Q psy2398 166 KSPD-----QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI 240 (433)
Q Consensus 166 ~~~~-----~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 240 (433)
.+.. ...+++++|||+|.+|+|+|..|.+.|.+|+++.+.+.+ +++. ++..... .+.
T Consensus 128 ~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l-l~~~------------ld~~~~~-----~l~ 189 (785)
T TIGR02374 128 EDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL-MAKQ------------LDQTAGR-----LLQ 189 (785)
T ss_pred HHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch-hhhh------------cCHHHHH-----HHH
Confidence 1111 124689999999999999999999999999999987642 2211 0011111 111
Q ss_pred HHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC----CeEEecCCceeeccEEEEccCC
Q psy2398 241 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG----NIVHFVDDTHIEVDTIIYATGY 316 (433)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~----~~v~~~dG~~~~~D~vi~atG~ 316 (433)
+ .+ ...++ ++.....+.++.+ ..|.++||+++++|.||+|+|+
T Consensus 190 ~----~l----~~~GV-------------------------~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 190 R----EL----EQKGL-------------------------TFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGI 236 (785)
T ss_pred H----HH----HHcCC-------------------------EEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCC
Confidence 1 11 11122 3334445555543 3477899999999999999999
Q ss_pred CCCCCCCCcccccccCCccccccccccCCCCcEEEEccccccC----ChhhHHHHHHHHHHHHHhhhh
Q psy2398 317 NRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA----GLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 317 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~----~~~~~a~~qa~~~a~~i~g~~ 380 (433)
+|+.+++....+... +++.+++ .+.++.|+|||+||++... +.+..+..||+.+|.+|.|..
T Consensus 237 ~Pn~~la~~~gl~~~-ggI~Vd~-~~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~ 302 (785)
T TIGR02374 237 RPNDELAVSAGIKVN-RGIIVND-SMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVE 302 (785)
T ss_pred CcCcHHHHhcCCccC-CCEEECC-CcccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCCC
Confidence 999988765555554 4555554 4578999999999998632 345567899999999999875
No 50
>PRK12831 putative oxidoreductase; Provisional
Probab=99.97 E-value=6.1e-29 Score=242.06 Aligned_cols=293 Identities=19% Similarity=0.229 Sum_probs=183.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+||||||+||++|..|++.|++|+|||+.+.+||.+.+.. +.+. .+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gi--------------------p~~~--------l~~ 190 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGI--------------------PEFR--------LPK 190 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecC--------------------CCcc--------CCc
Confidence 457999999999999999999999999999999988999876541 1111 112
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC-cEEEeCEEEEccCCCCCCCCCCCCC-CCCCceeccC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-KKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM 163 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g-~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~~~ 163 (433)
.++..+..+.++++++ .+++++.|.. .++..+. ..+.||.||+|||++ .|+.|+++| ...+ ++.+.
T Consensus 191 ~~~~~~~~~~~~~~gv--~i~~~~~v~~--------~v~~~~~~~~~~~d~viiAtGa~-~~~~l~ipG~~~~g-V~~~~ 258 (464)
T PRK12831 191 ETVVKKEIENIKKLGV--KIETNVVVGK--------TVTIDELLEEEGFDAVFIGSGAG-LPKFMGIPGENLNG-VFSAN 258 (464)
T ss_pred cHHHHHHHHHHHHcCC--EEEcCCEECC--------cCCHHHHHhccCCCEEEEeCCCC-CCCCCCCCCcCCcC-cEEHH
Confidence 3355555667777787 5777775521 1222222 235699999999983 577888888 3322 22221
Q ss_pred CC----------C---CCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhh
Q psy2398 164 DY----------K---SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF 230 (433)
Q Consensus 164 ~~----------~---~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~ 230 (433)
++ . ......+++|+|||+|++|+|+|..+.+.|.+|+++.|++...+| ...
T Consensus 259 ~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~----------------a~~ 322 (464)
T PRK12831 259 EFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELP----------------ARV 322 (464)
T ss_pred HHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCC----------------CCH
Confidence 11 1 112346899999999999999999999999999999987642222 110
Q ss_pred cCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcc--cCCCee-ecC-Cc--eeee--CC-eEEecC
Q psy2398 231 SSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI--GHGDIL-PKD-DI--KNLN--GN-IVHFVD 301 (433)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~-~~~-~v--~~~~--~~-~v~~~d 301 (433)
...+... ..|+. ...+....+.. ..|++. +.. .+ ...+ +. .-...+
T Consensus 323 -------~e~~~a~--------~eGV~----------i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~ 377 (464)
T PRK12831 323 -------EEVHHAK--------EEGVI----------FDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIE 377 (464)
T ss_pred -------HHHHHHH--------HcCCE----------EEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecC
Confidence 0000000 00110 00000000000 011111 000 00 0000 00 001113
Q ss_pred Cc--eeeccEEEEccCCCCCCCCCCc-ccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHh
Q psy2398 302 DT--HIEVDTIIYATGYNRHFPFIDK-EKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQ 377 (433)
Q Consensus 302 G~--~~~~D~vi~atG~~~~~~~l~~-~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~ 377 (433)
|+ ++++|.||+|+|+.|+..++.. ..+.. ..+.+.+++..+.|+.|+||++||+...+..+..|..+|+.+|..|.
T Consensus 378 g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~ 457 (464)
T PRK12831 378 GSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAATVILAMGAGKKAAKAID 457 (464)
T ss_pred CceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 33 5899999999999999887764 34444 33556666665789999999999998766677889999999998886
Q ss_pred hh
Q psy2398 378 AF 379 (433)
Q Consensus 378 g~ 379 (433)
..
T Consensus 458 ~~ 459 (464)
T PRK12831 458 EY 459 (464)
T ss_pred HH
Confidence 54
No 51
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.97 E-value=1.3e-28 Score=239.46 Aligned_cols=274 Identities=20% Similarity=0.207 Sum_probs=178.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.+..+ .+...
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip-----------------------------~~~~~ 182 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIP-----------------------------EFRLP 182 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCC-----------------------------CccCC
Confidence 4579999999999999999999999999999999889887755411 11112
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCceeccCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMD 164 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~~~~ 164 (433)
.++.+.......+.++ .++.++.+. ..+++.+. ...||+||+|||+. .|+.|+++| ...+ +++..+
T Consensus 183 ~~~~~~~~~~l~~~gv--~~~~~~~v~--------~~v~~~~~-~~~yd~viiAtGa~-~p~~~~ipG~~~~g-v~~~~~ 249 (449)
T TIGR01316 183 KEIVVTEIKTLKKLGV--TFRMNFLVG--------KTATLEEL-FSQYDAVFIGTGAG-LPKLMNIPGEELCG-VYSAND 249 (449)
T ss_pred HHHHHHHHHHHHhCCc--EEEeCCccC--------CcCCHHHH-HhhCCEEEEeCCCC-CCCcCCCCCCCCCC-cEEHHH
Confidence 3444444455566676 466665431 12333332 24699999999973 578888888 3333 222221
Q ss_pred CC--------------CCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhh
Q psy2398 165 YK--------------SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF 230 (433)
Q Consensus 165 ~~--------------~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~ 230 (433)
+. ......+++|+|||+|++|+|+|..+.+.|.+||++.|++...++. .
T Consensus 250 ~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~----------------~- 312 (449)
T TIGR01316 250 FLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTA----------------R- 312 (449)
T ss_pred HHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCC----------------C-
Confidence 11 1112468999999999999999999999999999999986421111 0
Q ss_pred cCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC---C---eEEec----
Q psy2398 231 SSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG---N---IVHFV---- 300 (433)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~---~---~v~~~---- 300 (433)
. ...+.+. ..|+ .+.....+.++.+ . +|.+.
T Consensus 313 -~-----~~~~~l~--------~~GV-------------------------~~~~~~~~~~i~~~~~g~v~~v~~~~~~~ 353 (449)
T TIGR01316 313 -V-----EEIAHAE--------EEGV-------------------------KFHFLCQPVEIIGDEEGNVRAVKFRKMDC 353 (449)
T ss_pred -H-----HHHHHHH--------hCCC-------------------------EEEeccCcEEEEEcCCCeEEEEEEEEEEe
Confidence 0 1111110 0111 1111111222110 0 11111
Q ss_pred -----CC-----------ceeeccEEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEccccccCChhh
Q psy2398 301 -----DD-----------THIEVDTIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGD 363 (433)
Q Consensus 301 -----dG-----------~~~~~D~vi~atG~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~ 363 (433)
+| .++++|.||+|+|++|+..+++...+..+ .+.+.++. .+.|+.|+||++||+...+..+.
T Consensus 354 ~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~-~~~Ts~~~VfA~GD~~~g~~~v~ 432 (449)
T TIGR01316 354 QEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDE-DQRTSIPGVFAGGDIILGAATVI 432 (449)
T ss_pred cCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCC-CCccCCCCEEEecCCCCCcHHHH
Confidence 12 25899999999999999888775555543 34555544 46788999999999987667778
Q ss_pred HHHHHHHHHHHHHhh
Q psy2398 364 GLRLQGQFIRSYIQA 378 (433)
Q Consensus 364 ~a~~qa~~~a~~i~g 378 (433)
.|..||+.+|..|..
T Consensus 433 ~Ai~~G~~AA~~I~~ 447 (449)
T TIGR01316 433 RAMGQGKRAAKSINE 447 (449)
T ss_pred HHHHHHHHHHHHHHh
Confidence 899999999998864
No 52
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.96 E-value=1.5e-28 Score=250.87 Aligned_cols=295 Identities=19% Similarity=0.218 Sum_probs=184.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+||||||+|++||..|++.|++|+|||+.+.+||.+.+..| .+...
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP-----------------------------~~Rlp 588 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIP-----------------------------QFRIP 588 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecc-----------------------------ccccc
Confidence 3579999999999999999999999999999999999998765411 11111
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDY 165 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~~ 165 (433)
.++.+.-.+.+..+++ ++++++.+ .++ +++.....||+||+|||++ .+..++++|.-. .++++.++
T Consensus 589 ~evL~~die~l~~~GV--e~~~gt~V-di~---------le~L~~~gYDaVILATGA~-~~~~l~IpG~~~-gV~saldf 654 (1019)
T PRK09853 589 AELIQHDIEFVKAHGV--KFEFGCSP-DLT---------VEQLKNEGYDYVVVAIGAD-KNGGLKLEGGNQ-NVIKALPF 654 (1019)
T ss_pred HHHHHHHHHHHHHcCC--EEEeCcee-EEE---------hhhheeccCCEEEECcCCC-CCCCCCCCCccC-CceehHHH
Confidence 2333444455666777 58888766 222 1222345699999999995 345556777211 22222221
Q ss_pred CC------CCCCCCCeEEEEcCCCCHHHHHHHHhcc-C-CcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHH
Q psy2398 166 KS------PDQIRNKRVLVVGAGNSGCDIAVDASHH-S-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM 237 (433)
Q Consensus 166 ~~------~~~~~~~~v~VvG~G~sg~d~a~~l~~~-~-~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~ 237 (433)
.. .....+++|+|||+|++|+|+|..+.+. + ++|+++.|++...+|...
T Consensus 655 L~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~----------------------- 711 (1019)
T PRK09853 655 LEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWR----------------------- 711 (1019)
T ss_pred HHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccH-----------------------
Confidence 11 1123589999999999999999998887 4 589999998743333210
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecC-Cceeee--CC--eEEecCCceeeccEEEE
Q psy2398 238 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD-DIKNLN--GN--IVHFVDDTHIEVDTIIY 312 (433)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~v~~~~--~~--~v~~~dG~~~~~D~vi~ 312 (433)
...+. ... .|+. .............+++.... .+...+ +. .+...++.++++|.||+
T Consensus 712 eEle~---Ale-----eGVe----------~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIv 773 (1019)
T PRK09853 712 EEYEE---ALE-----DGVE----------FKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVIT 773 (1019)
T ss_pred HHHHH---HHH-----cCCE----------EEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEE
Confidence 01111 110 0110 00000000000112222100 000111 11 12233456799999999
Q ss_pred ccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhhhcCCCc
Q psy2398 313 ATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKG 385 (433)
Q Consensus 313 atG~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~~~lp~~ 385 (433)
|+|++|+.+++...++..+ .+++.+ +..+.++.|+||++||+...+..+..|..||+.+|.+|.+....+..
T Consensus 774 AIG~~Pntelle~~GL~ld~~G~I~V-DetlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~~~~~ 846 (1019)
T PRK09853 774 AIGEQVDTELLKANGIPLDKKGWPVV-DANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREGIRSH 846 (1019)
T ss_pred CCCCcCChhHHHhcCccccCCCCEEe-CCCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcCCCcc
Confidence 9999999998875555443 355555 44567889999999999876777788999999999999987664443
No 53
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.96 E-value=9.3e-29 Score=240.92 Aligned_cols=307 Identities=13% Similarity=0.105 Sum_probs=188.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcc----cCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT----QVPDYPMPDNYPVY 82 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 82 (433)
++|++|||||++|..+|.. ..|.+|+++|+ ..+||+|.+.. |.|+..+....... ....+...... ..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~G----CiPsK~l~~~a~~~~~~~~~~~~g~~~~~-~~ 73 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNVG----CIPTKMFVYAAEVAQSIGESARLGIDAEI-DS 73 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeeccC----ccchHHHHHHHHHHHHHHHhhccCeeCCC-Cc
Confidence 5899999999999998654 46999999998 46999999874 34443322211110 11111111000 01
Q ss_pred CCHHHHHHHHHH-HHHHc-CCCcceEeC---cEEEEEEEe---CCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCC
Q psy2398 83 PNHSMMLDYLRS-YAKKF-DVYNHSIFN---TEVINLEQY---EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY 154 (433)
Q Consensus 83 ~~~~~~~~~l~~-~~~~~-~~~~~i~~~---~~V~~v~~~---~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~ 154 (433)
.....+.++... ..+.. .......+. ..|+-+... .+.++|.+.++.++.||+||+|||+ .|..|++.+.
T Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs--~p~~p~~~~~ 151 (452)
T TIGR03452 74 VRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGS--RPYIPPAIAD 151 (452)
T ss_pred cCHHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECC--CCCCCCCCCC
Confidence 234444444433 22211 000001110 122222211 3445677777778999999999998 7787764431
Q ss_pred CCC-ceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCc
Q psy2398 155 FSG-EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSK 233 (433)
Q Consensus 155 ~~g-~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~ 233 (433)
.+ .+..+.+...... .+++++|||+|.+|+|+|..|.+.+.+|+++.+.+.. ++.. +.
T Consensus 152 -~~~~~~~~~~~~~l~~-~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l-l~~~-------------d~----- 210 (452)
T TIGR03452 152 -SGVRYHTNEDIMRLPE-LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL-LRHL-------------DE----- 210 (452)
T ss_pred -CCCEEEcHHHHHhhhh-cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc-cccc-------------CH-----
Confidence 12 1222222222112 3689999999999999999999999999999987642 2211 01
Q ss_pred hHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee--CC--eEEecCCceeeccE
Q psy2398 234 EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN--GN--IVHFVDDTHIEVDT 309 (433)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~--~~--~v~~~dG~~~~~D~ 309 (433)
...+.+.+... .++ .+.....+.+++ +. .+.+.+|+++++|.
T Consensus 211 ----~~~~~l~~~~~-----~gI-------------------------~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~ 256 (452)
T TIGR03452 211 ----DISDRFTEIAK-----KKW-------------------------DIRLGRNVTAVEQDGDGVTLTLDDGSTVTADV 256 (452)
T ss_pred ----HHHHHHHHHHh-----cCC-------------------------EEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCE
Confidence 11111111110 011 233344455554 22 35567888899999
Q ss_pred EEEccCCCCCCCCCCcc--cccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 310 IIYATGYNRHFPFIDKE--KLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 310 vi~atG~~~~~~~l~~~--~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
||+|+|++|+.++++.+ ++.. +.+.+.+++++ .|+.|+||++|||.....+.+.|..||+.+|++|.+.
T Consensus 257 vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~-~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 328 (452)
T TIGR03452 257 LLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYG-RTSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHP 328 (452)
T ss_pred EEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCc-ccCCCCEEEeecccCcccChhHHHHHHHHHHHHhcCC
Confidence 99999999999987533 3444 34557666654 6999999999999987778889999999999999875
No 54
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.96 E-value=7.9e-29 Score=242.44 Aligned_cols=305 Identities=16% Similarity=0.178 Sum_probs=186.7
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCc----ccCCCCCCCCC-CCCCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFN----TQVPDYPMPDN-YPVYP 83 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~ 83 (433)
+|+||||||+|+++|..+++.|.+|+++|+. .+||+|.+.. |.|+..+...... .....+..... .....
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n~g----ciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 76 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLNEG----CMPTKSLLESAEVHDKVKKANHFGITLPNGSISI 76 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCCCc----cccchHHHHHHHHHHHHHHHHhcCccccCCCCcc
Confidence 7999999999999999999999999999986 5899888763 3443322111000 00011111100 00012
Q ss_pred CHHHHHHHHHHHHHH-----------cCCCcceEeCcEEEEEEEeCCeEEEEEccC-cEEEeCEEEEccCCCCCCCCCCC
Q psy2398 84 NHSMMLDYLRSYAKK-----------FDVYNHSIFNTEVINLEQYEDIWEVELSNG-KKKKYDFIAVCNGAQRVARYPNY 151 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~-----------~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g-~~~~~d~vIvAtG~~s~p~~p~i 151 (433)
....+.++..+..+. .++ .+ +..++..+ +.+.+.|+..++ .++.||+||+|||+ .|..|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~-~~g~a~~~--~~~~v~v~~~~~~~~~~~d~lviATGs--~p~~~p~ 149 (458)
T PRK06912 77 DWKQMQARKSQIVTQLVQGIQYLMKKNKI--KV-IQGKASFE--TDHRVRVEYGDKEEVVDAEQFIIAAGS--EPTELPF 149 (458)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCCc--EE-EEEEEEEc--cCCEEEEeeCCCcEEEECCEEEEeCCC--CCCCCCC
Confidence 233333333332222 222 11 11222222 245666766555 36899999999998 6777766
Q ss_pred CCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhc
Q psy2398 152 SGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFS 231 (433)
Q Consensus 152 ~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~ 231 (433)
++.....++++.+...... .+++++|||+|.+|+|+|..+.+.+.+|+++.+.+.. +|.. + .
T Consensus 150 ~~~~~~~v~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l-l~~~----d---------~--- 211 (458)
T PRK06912 150 APFDGKWIINSKHAMSLPS-IPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL-LPGE----D---------E--- 211 (458)
T ss_pred CCCCCCeEEcchHHhCccc-cCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc-Cccc----c---------H---
Confidence 6511112444433332222 3578999999999999999999999999999987642 2211 0 0
Q ss_pred CchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC--CeEEec-CCc--eee
Q psy2398 232 SKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--NIVHFV-DDT--HIE 306 (433)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~--~~v~~~-dG~--~~~ 306 (433)
.+.+.+.+.+. ..++ ++.....+.+++. ..+.+. +|. +++
T Consensus 212 ------e~~~~l~~~L~----~~GI-------------------------~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~ 256 (458)
T PRK06912 212 ------DIAHILREKLE----NDGV-------------------------KIFTGAALKGLNSYKKQALFEYEGSIQEVN 256 (458)
T ss_pred ------HHHHHHHHHHH----HCCC-------------------------EEEECCEEEEEEEcCCEEEEEECCceEEEE
Confidence 11111111111 1111 2333445666643 234443 443 589
Q ss_pred ccEEEEccCCCCCCCCCC--cccccccCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 307 VDTIIYATGYNRHFPFID--KEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 307 ~D~vi~atG~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
+|.||+|||++|+..++. ...+....+++.+++. +.++.||||++||+.....+.+.|..|++.+|.++.|.
T Consensus 257 ~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~-~~ts~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~~g~ 330 (458)
T PRK06912 257 AEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEH-MQTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASGE 330 (458)
T ss_pred eCEEEEecCCccCCCCCCchhcCceecCCCEEeCCC-eecCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 999999999999988754 3334444445666554 46889999999999876677889999999999999875
No 55
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.96 E-value=2.2e-28 Score=239.22 Aligned_cols=277 Identities=21% Similarity=0.272 Sum_probs=181.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+|||||++|+++|..|++.|++|++||+.+.+||.+.+..+ .+...
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip-----------------------------~~~~~ 189 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIP-----------------------------EFRLP 189 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCC-----------------------------CccCC
Confidence 4579999999999999999999999999999999989887655310 11112
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCceeccCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMD 164 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~~~~ 164 (433)
.++.++....++++++ .+++++.+.. .+++.+. ...||+||+|||+. .|+.++++| ...+ +++..+
T Consensus 190 ~~~~~~~~~~l~~~gv--~~~~~~~v~~--------~v~~~~~-~~~~d~vvlAtGa~-~~~~~~i~G~~~~g-v~~~~~ 256 (457)
T PRK11749 190 KDIVDREVERLLKLGV--EIRTNTEVGR--------DITLDEL-RAGYDAVFIGTGAG-LPRFLGIPGENLGG-VYSAVD 256 (457)
T ss_pred HHHHHHHHHHHHHcCC--EEEeCCEECC--------ccCHHHH-HhhCCEEEEccCCC-CCCCCCCCCccCCC-cEEHHH
Confidence 4556666666777776 4777766521 1222222 26899999999984 466677887 3222 222211
Q ss_pred CCC--------CCCCCCCeEEEEcCCCCHHHHHHHHhccCC-cEEEEEecCceeecccCCCCChhHHhHhhchhhcCchH
Q psy2398 165 YKS--------PDQIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEE 235 (433)
Q Consensus 165 ~~~--------~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~ 235 (433)
+.. .....+++|+|||+|.+|+|+|..+.+.+. +|+++.|++...+|.. .
T Consensus 257 ~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~--------------~------- 315 (457)
T PRK11749 257 FLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPAS--------------E------- 315 (457)
T ss_pred HHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCC--------------H-------
Confidence 111 111358999999999999999999999876 8999998764333211 0
Q ss_pred HHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC-----eEEe-----------
Q psy2398 236 TMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN-----IVHF----------- 299 (433)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~-----~v~~----------- 299 (433)
...+.+. ..++ .+.....+.++.+. +|.+
T Consensus 316 --~~~~~~~--------~~GV-------------------------~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~ 360 (457)
T PRK11749 316 --EEVEHAK--------EEGV-------------------------EFEWLAAPVEILGDEGRVTGVEFVRMELGEPDAS 360 (457)
T ss_pred --HHHHHHH--------HCCC-------------------------EEEecCCcEEEEecCCceEEEEEEEEEecCcCCC
Confidence 1111100 0111 11122223333211 1222
Q ss_pred --------cCCceeeccEEEEccCCCCCCCCCCc-ccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHH
Q psy2398 300 --------VDDTHIEVDTIIYATGYNRHFPFIDK-EKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQG 369 (433)
Q Consensus 300 --------~dG~~~~~D~vi~atG~~~~~~~l~~-~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa 369 (433)
.++.++++|.||+|+|++|+..++.. ..+.. ..+.+.+++..+.|+.|+||++||+......+..|..||
T Consensus 361 g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G 440 (457)
T PRK11749 361 GRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAATVVWAVGDG 440 (457)
T ss_pred CCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCchHHHHHHHHH
Confidence 12346899999999999999776542 23333 345666666467889999999999986556777899999
Q ss_pred HHHHHHHhhhh
Q psy2398 370 QFIRSYIQAFI 380 (433)
Q Consensus 370 ~~~a~~i~g~~ 380 (433)
+.+|.+|...+
T Consensus 441 ~~aA~~I~~~l 451 (457)
T PRK11749 441 KDAAEAIHEYL 451 (457)
T ss_pred HHHHHHHHHHH
Confidence 99998886554
No 56
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.96 E-value=9.7e-28 Score=249.01 Aligned_cols=297 Identities=19% Similarity=0.188 Sum_probs=188.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+|||||||||+||..|++.|++|+|||+.+.+||...+..| .|.-.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP-----------------------------~~rlp 355 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIP-----------------------------EFRLP 355 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCC-----------------------------CCcCh
Confidence 3589999999999999999999999999999999999998877622 22223
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCceeccCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMD 164 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~~~~ 164 (433)
.++.+...+..+.+|+ .++.++.+- ..+++++.....||+||+|||++ .|+.+++|| ...| ++.+.+
T Consensus 356 ~~vi~~~i~~l~~~Gv--~f~~n~~vG--------~dit~~~l~~~~yDAV~LAtGA~-~pr~l~IpG~dl~G-V~~a~d 423 (944)
T PRK12779 356 NQLIDDVVEKIKLLGG--RFVKNFVVG--------KTATLEDLKAAGFWKIFVGTGAG-LPTFMNVPGEHLLG-VMSANE 423 (944)
T ss_pred HHHHHHHHHHHHhhcC--eEEEeEEec--------cEEeHHHhccccCCEEEEeCCCC-CCCcCCCCCCcCcC-cEEHHH
Confidence 4555555566677777 466665431 23555554445799999999984 588888988 3333 221111
Q ss_pred CC---------------CCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchh
Q psy2398 165 YK---------------SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNK 229 (433)
Q Consensus 165 ~~---------------~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~ 229 (433)
+. ......||+|+|||+|++|+|+|..+.+.|.+|+++.|++...+| .+
T Consensus 424 fL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mp----------------a~ 487 (944)
T PRK12779 424 FLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMP----------------AR 487 (944)
T ss_pred HHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCccccc----------------cc
Confidence 11 011246899999999999999999999999999999988642222 11
Q ss_pred hcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccC---CCee-ecCCceee-----eCCeEEec
Q psy2398 230 FSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGH---GDIL-PKDDIKNL-----NGNIVHFV 300 (433)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~-~~~~v~~~-----~~~~v~~~ 300 (433)
.. .+.+ ... .|+. ........+...+ +.+. +.....+. ++......
T Consensus 488 ~~------e~~~----a~e-----eGV~----------~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~ 542 (944)
T PRK12779 488 VE------ELHH----ALE-----EGIN----------LAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKP 542 (944)
T ss_pred HH------HHHH----HHH-----CCCE----------EEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeec
Confidence 00 0111 000 0110 0000000111111 0111 00000000 01111112
Q ss_pred CCc--eeeccEEEEccCCCCCCCCCCc-ccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHH
Q psy2398 301 DDT--HIEVDTIIYATGYNRHFPFIDK-EKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYI 376 (433)
Q Consensus 301 dG~--~~~~D~vi~atG~~~~~~~l~~-~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i 376 (433)
+|+ ++++|.||+|+|++|+..+... ..+.. ..+.+.+++..+.|+.|+||++||+...+..+..|..+++.+|..|
T Consensus 543 ~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I 622 (944)
T PRK12779 543 TGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEI 622 (944)
T ss_pred CCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChHHHHHHHHHHHHHHHHH
Confidence 343 5899999999999998654322 12333 3355666666678999999999999986667788999999999999
Q ss_pred hhhhcCCC
Q psy2398 377 QAFIRKSK 384 (433)
Q Consensus 377 ~g~~~lp~ 384 (433)
...+.+..
T Consensus 623 ~~~L~~~~ 630 (944)
T PRK12779 623 VGEIPFTP 630 (944)
T ss_pred HHHhcccc
Confidence 88766543
No 57
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.95 E-value=4.6e-27 Score=241.36 Aligned_cols=291 Identities=19% Similarity=0.215 Sum_probs=177.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
.++|+||||||+||+||..|++.|++|+|||+.+.+||...+..| .+....
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP-----------------------------~~rlp~ 587 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIP-----------------------------EFRISA 587 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeeccc-----------------------------ccCCCH
Confidence 479999999999999999999999999999999999988755411 111112
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYK 166 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~~~ 166 (433)
+..+...+.+..+++ .+++++.. .++..+.....||+||+|||++ .+..+.++|.-. .++.+.++.
T Consensus 588 e~l~~~ie~l~~~GV--e~~~g~~~----------d~~ve~l~~~gYDaVIIATGA~-~~~~l~I~G~~~-~v~~avefL 653 (1012)
T TIGR03315 588 ESIQKDIELVKFHGV--EFKYGCSP----------DLTVAELKNQGYKYVILAIGAW-KHGPLRLEGGGE-RVLKSLEFL 653 (1012)
T ss_pred HHHHHHHHHHHhcCc--EEEEeccc----------ceEhhhhhcccccEEEECCCCC-CCCCCCcCCCCc-ceeeHHHHH
Confidence 333333344555666 35555321 0112222235699999999984 344556776211 122211111
Q ss_pred ----C--CCCCCCCeEEEEcCCCCHHHHHHHHhcc-C-CcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHH
Q psy2398 167 ----S--PDQIRNKRVLVVGAGNSGCDIAVDASHH-S-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMA 238 (433)
Q Consensus 167 ----~--~~~~~~~~v~VvG~G~sg~d~a~~l~~~-~-~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~ 238 (433)
. .....+++|+|||+|++|+|+|..+.+. | ++|+++.|+....+|... . .
T Consensus 654 ~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~-------------e---------E 711 (1012)
T TIGR03315 654 RAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASR-------------E---------E 711 (1012)
T ss_pred HHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCH-------------H---------H
Confidence 1 1123589999999999999999998876 5 589999988643333110 0 1
Q ss_pred HHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecC-Cceee--eCCeEEecCCc--eeeccEEEEc
Q psy2398 239 YIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD-DIKNL--NGNIVHFVDDT--HIEVDTIIYA 313 (433)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~v~~~--~~~~v~~~dG~--~~~~D~vi~a 313 (433)
+.+ ... .|+. + ..... ...+..+++++.. .+... ++......+|+ ++++|.||+|
T Consensus 712 l~~----ale-----eGVe-----~-----~~~~~-p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvA 771 (1012)
T TIGR03315 712 LEE----ALE-----DGVD-----F-----KELLS-PESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAA 771 (1012)
T ss_pred HHH----HHH-----cCCE-----E-----EeCCc-eEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEe
Confidence 111 111 0110 0 00000 0001112222110 00000 11112223454 5899999999
Q ss_pred cCCCCCCCCCCcccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhhhcC
Q psy2398 314 TGYNRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRK 382 (433)
Q Consensus 314 tG~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~~~l 382 (433)
+|++|+..+++...+.. ..+.+.++.....++.|+||++||+...+..+..|..||+.+|..|.++...
T Consensus 772 iG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~~~~ 841 (1012)
T TIGR03315 772 VGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSREGL 841 (1012)
T ss_pred cCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhccccC
Confidence 99999998887555554 3356666665578899999999999876777888999999999999876544
No 58
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.95 E-value=1.6e-27 Score=227.25 Aligned_cols=283 Identities=18% Similarity=0.227 Sum_probs=183.6
Q ss_pred cEEEECCChHHHHHHHHHHhc---CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 9 KLCIIGGGPLGIGLGRELSEG---NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~---g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
+|+|||||++|+.+|..|.++ +.+|+|||+++.. . |... + +....+....
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~----~--------~~~~----------~-----~~~~~g~~~~ 53 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT----P--------YSGM----------L-----PGMIAGHYSL 53 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC----c--------ccch----------h-----hHHHheeCCH
Confidence 589999999999999999643 6799999987642 0 1100 0 0000011223
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccC--
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSM-- 163 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~-- 163 (433)
.++...+.++++++++ ++. ..+|+.|+.+.+ +|.+.+++++.||+||+|||+ .|..|+++|.-. .+....
T Consensus 54 ~~~~~~~~~~~~~~gv--~~~-~~~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~--~~~~~~i~g~~~-~~~~~~~~ 125 (364)
T TIGR03169 54 DEIRIDLRRLARQAGA--RFV-IAEATGIDPDRR--KVLLANRPPLSYDVLSLDVGS--TTPLSGVEGAAD-LAVPVKPI 125 (364)
T ss_pred HHhcccHHHHHHhcCC--EEE-EEEEEEEecccC--EEEECCCCcccccEEEEccCC--CCCCCCCCcccc-cccccCCH
Confidence 4455556666777776 344 358999987544 677788878999999999998 888888888111 111000
Q ss_pred ----C----CCCC-C-CCCCCeEEEEcCCCCHHHHHHHHhcc----C--CcEEEEEecCceeecccCCCCChhHHhHhhc
Q psy2398 164 ----D----YKSP-D-QIRNKRVLVVGAGNSGCDIAVDASHH----S--EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLG 227 (433)
Q Consensus 164 ----~----~~~~-~-~~~~~~v~VvG~G~sg~d~a~~l~~~----~--~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p 227 (433)
. +... . ...+++++|||+|.+|+|+|.+|.+. + .+|+++ +.+. +++.. +
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~-~l~~~-------------~ 190 (364)
T TIGR03169 126 ENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGAS-LLPGF-------------P 190 (364)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCc-ccccC-------------C
Confidence 0 0000 0 12357999999999999999999853 3 479888 4332 22211 1
Q ss_pred hhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCeEEecCCceeec
Q psy2398 228 NKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEV 307 (433)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~~dG~~~~~ 307 (433)
..+.. .+.+. +. ..++ ++.....++++++..+.+.+|.++++
T Consensus 191 ~~~~~-----~~~~~----l~----~~gV-------------------------~v~~~~~v~~i~~~~v~~~~g~~i~~ 232 (364)
T TIGR03169 191 AKVRR-----LVLRL----LA----RRGI-------------------------EVHEGAPVTRGPDGALILADGRTLPA 232 (364)
T ss_pred HHHHH-----HHHHH----HH----HCCC-------------------------EEEeCCeeEEEcCCeEEeCCCCEEec
Confidence 11111 11111 11 1111 23334567777777889999999999
Q ss_pred cEEEEccCCCCCCCCCCcccccc-cCCccccccccccCCCCcEEEEcccccc-----CChhhHHHHHHHHHHHHHhhhh
Q psy2398 308 DTIIYATGYNRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAA-----AGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 308 D~vi~atG~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~-----~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
|.||+|+|.+|+ +++....+.. +.+++.+++.+..+++||||++|||+.. +.....|..||+.+|++|....
T Consensus 233 D~vi~a~G~~p~-~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l 310 (364)
T TIGR03169 233 DAILWATGARAP-PWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASL 310 (364)
T ss_pred CEEEEccCCChh-hHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHh
Confidence 999999999998 5555444444 3466777766555589999999999853 2245578999999998886554
No 59
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.95 E-value=3.2e-27 Score=243.73 Aligned_cols=293 Identities=18% Similarity=0.232 Sum_probs=178.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+||||||+|++||..|++.|++|+|||+.+.+||.+.+..| ++ ...
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip--------------------~~---------rlp 480 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIP--------------------EF---------RLP 480 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCC--------------------CC---------CCC
Confidence 4579999999999999999999999999999998889988766411 11 111
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDY 165 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~~ 165 (433)
.++.+...+.++++++ .++.++.+. . .+++++.....||+||+|||++ .|+.|++||.....++++.++
T Consensus 481 ~~~~~~~~~~l~~~gv--~~~~~~~v~------~--~v~~~~l~~~~ydavvlAtGa~-~~~~l~ipG~~~~gV~~~~~~ 549 (752)
T PRK12778 481 KKIVDVEIENLKKLGV--KFETDVIVG------K--TITIEELEEEGFKGIFIASGAG-LPNFMNIPGENSNGVMSSNEY 549 (752)
T ss_pred HHHHHHHHHHHHHCCC--EEECCCEEC------C--cCCHHHHhhcCCCEEEEeCCCC-CCCCCCCCCCCCCCcEEHHHH
Confidence 2334444455566777 477676541 1 2333333346799999999983 578888888222222222211
Q ss_pred C-------------CCCCCCCCeEEEEcCCCCHHHHHHHHhccCCc-EEEEEecCceeecccCCCCChhHHhHhhchhhc
Q psy2398 166 K-------------SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEK-VYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFS 231 (433)
Q Consensus 166 ~-------------~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~-V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~ 231 (433)
. ......+++|+|||+|++|+|+|..+.+.|.+ |+++.|++...+|. ..
T Consensus 550 l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~----------------~~- 612 (752)
T PRK12778 550 LTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPA----------------RL- 612 (752)
T ss_pred HHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC----------------CH-
Confidence 1 11124689999999999999999999999876 99999886422221 11
Q ss_pred CchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcc--cCCCee-ecC-Cce--ee--eCCe-EEecCC
Q psy2398 232 SKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI--GHGDIL-PKD-DIK--NL--NGNI-VHFVDD 302 (433)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~-~~~-~v~--~~--~~~~-v~~~dG 302 (433)
...+... ..++. ........+.. ..|+++ +.. .++ .. ++.. ....+|
T Consensus 613 ------~e~~~~~--------~~GV~----------i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g 668 (752)
T PRK12778 613 ------EEVKHAK--------EEGIE----------FLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPG 668 (752)
T ss_pred ------HHHHHHH--------HcCCE----------EEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCC
Confidence 0001100 00110 00000000000 011111 000 000 00 0000 001122
Q ss_pred c--eeeccEEEEccCCCCCCCCCCcc-ccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhh
Q psy2398 303 T--HIEVDTIIYATGYNRHFPFIDKE-KLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 303 ~--~~~~D~vi~atG~~~~~~~l~~~-~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g 378 (433)
+ ++++|.||+|+|++|+..++... .+..+ .+.+.+++.. .|+.|+||++||+...+..+..|..|++.+|..|..
T Consensus 669 ~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~-~Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~ 747 (752)
T PRK12778 669 STFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEM-QSSIPGIYAGGDIVRGGATVILAMGDGKRAAAAIDE 747 (752)
T ss_pred CeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCC-CCCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHHH
Confidence 2 58999999999999998766532 34443 3556665544 789999999999987666778899999999998875
Q ss_pred hh
Q psy2398 379 FI 380 (433)
Q Consensus 379 ~~ 380 (433)
.+
T Consensus 748 ~L 749 (752)
T PRK12778 748 YL 749 (752)
T ss_pred Hh
Confidence 43
No 60
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.95 E-value=8.6e-27 Score=220.53 Aligned_cols=288 Identities=20% Similarity=0.217 Sum_probs=178.7
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCC
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
+...++|+|||||++|+.+|..|++.|.+|++||+.+.+||.+....+ . ...
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~--------------------~--------~~~ 66 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIP--------------------E--------FRI 66 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCc--------------------c--------ccc
Confidence 345679999999999999999999999999999999888876543200 0 011
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEE----eCCeEEEEEc--cCcEEEeCEEEEccCCCCCCCCCCCCC-CCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ----YEDIWEVELS--NGKKKKYDFIAVCNGAQRVARYPNYSG-YFS 156 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~----~~~~~~v~~~--~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~ 156 (433)
+.+.+...+..+.+ .++ +++.++.+..+.. +.+.+..... ++..+.||+||+|||+. .|..|++|| ...
T Consensus 67 ~~~~~~~~~~~l~~-~~i--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~-~~~~~~ipg~~~~ 142 (352)
T PRK12770 67 PIERVREGVKELEE-AGV--VFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTW-KSRKLGIPGEDLP 142 (352)
T ss_pred CHHHHHHHHHHHHh-CCe--EEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCC-CCCcCCCCCcccc
Confidence 23444445555444 366 4777877765532 1222322211 11236899999999983 467788887 322
Q ss_pred Cce--------eccCCC--CCC---CCCCCCeEEEEcCCCCHHHHHHHHhccCCc-EEEEEecCceeecccCCCCChhHH
Q psy2398 157 GEI--------LHSMDY--KSP---DQIRNKRVLVVGAGNSGCDIAVDASHHSEK-VYHSTRRGYHYYPKFIDGKPTPQW 222 (433)
Q Consensus 157 g~~--------~~~~~~--~~~---~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~-V~~~~r~~~~~~p~~~~~~~~~~~ 222 (433)
+.. +++... ... ..+.+++++|||+|.+|+|+|..|...+.+ |+++.|++.+..+.
T Consensus 143 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~---------- 212 (352)
T PRK12770 143 GVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPA---------- 212 (352)
T ss_pred CceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCC----------
Confidence 211 111111 111 134588999999999999999999888876 99999875321110
Q ss_pred hHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC----eEE
Q psy2398 223 MLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN----IVH 298 (433)
Q Consensus 223 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~----~v~ 298 (433)
.. ...+.+. ..++ .+.....+.++.++ .|.
T Consensus 213 --------~~-----~~~~~l~--------~~gi-------------------------~i~~~~~v~~i~~~~~~~~v~ 246 (352)
T PRK12770 213 --------GK-----YEIERLI--------ARGV-------------------------EFLELVTPVRIIGEGRVEGVE 246 (352)
T ss_pred --------CH-----HHHHHHH--------HcCC-------------------------EEeeccCceeeecCCcEeEEE
Confidence 00 1111111 0111 01111112222110 011
Q ss_pred ------------------e--cCCceeeccEEEEccCCCCCCCCCCc-cccccc-CCccccccccccCCCCcEEEEcccc
Q psy2398 299 ------------------F--VDDTHIEVDTIIYATGYNRHFPFIDK-EKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVN 356 (433)
Q Consensus 299 ------------------~--~dG~~~~~D~vi~atG~~~~~~~l~~-~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~ 356 (433)
. .++.++++|.||+|+|++|+..+... ..+..+ .+.+.++.. ..++.|+||++||++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~-~~t~~~~vyaiGD~~ 325 (352)
T PRK12770 247 LAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEK-HMTSREGVFAAGDVV 325 (352)
T ss_pred EEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCC-cccCCCCEEEEcccc
Confidence 1 12346899999999999999877654 333332 345555554 467899999999998
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhh
Q psy2398 357 AAAGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 357 ~~~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
..+..+..|..||+.+|.+|...+
T Consensus 326 ~~~~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 326 TGPSKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHH
Confidence 766778889999999999987654
No 61
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.95 E-value=9.7e-27 Score=235.44 Aligned_cols=291 Identities=19% Similarity=0.218 Sum_probs=179.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+||||||+|+++|..|++.|++|+|||+.+.+||.+.+..+ .+...
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip-----------------------------~~~~~ 242 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIP-----------------------------RFRLP 242 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCC-----------------------------CCCCC
Confidence 3479999999999999999999999999999999999998866411 11122
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCceeccCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMD 164 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~~~~ 164 (433)
.++.+...+.+..+++ ++++++.+. + .++..+. ...||.||+|||++ .+..++++| ...+ +++...
T Consensus 243 ~~~~~~~~~~l~~~Gv--~i~~~~~v~-~-------dv~~~~~-~~~~DaVilAtGa~-~~~~~~ipG~~~~g-v~~~~~ 309 (652)
T PRK12814 243 ESVIDADIAPLRAMGA--EFRFNTVFG-R-------DITLEEL-QKEFDAVLLAVGAQ-KASKMGIPGEELPG-VISGID 309 (652)
T ss_pred HHHHHHHHHHHHHcCC--EEEeCCccc-C-------ccCHHHH-HhhcCEEEEEcCCC-CCCCCCCCCcCcCC-cEeHHH
Confidence 3444444555666776 477776541 1 1222221 23599999999984 234567777 3333 221111
Q ss_pred C-----CCCCCCCCCeEEEEcCCCCHHHHHHHHhccCC-cEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHH
Q psy2398 165 Y-----KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMA 238 (433)
Q Consensus 165 ~-----~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~ 238 (433)
+ .......+++|+|||+|++|+|+|..+.+.+. +|+++.|++...+|... . .
T Consensus 310 ~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~-------------~---------e 367 (652)
T PRK12814 310 FLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANR-------------A---------E 367 (652)
T ss_pred HHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCH-------------H---------H
Confidence 1 11123568999999999999999999998864 69999988743333210 0 1
Q ss_pred HHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhccc-CCCeeecC-Ccee--ee--CC-eEEecCCc--eeeccE
Q psy2398 239 YIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIG-HGDILPKD-DIKN--LN--GN-IVHFVDDT--HIEVDT 309 (433)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~-~v~~--~~--~~-~v~~~dG~--~~~~D~ 309 (433)
+.+. .. .|+. ...+........ .+.+.+.. .++. .+ +. .....+|+ ++++|.
T Consensus 368 i~~a----~~-----eGV~----------i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~ 428 (652)
T PRK12814 368 IEEA----LA-----EGVS----------LRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADT 428 (652)
T ss_pred HHHH----HH-----cCCc----------EEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCE
Confidence 1111 00 0110 000000000000 11111000 0000 00 00 01122343 489999
Q ss_pred EEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhhh
Q psy2398 310 IIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 310 vi~atG~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g~ 379 (433)
||+|+|+.|+..+++...+..+ .+.+.++...+.++.|+||++||+...+..+..|..||+.+|.+|...
T Consensus 429 VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~~~ 499 (652)
T PRK12814 429 VISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGADIAINAVEQGKRAAHAIDLF 499 (652)
T ss_pred EEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876555553 356777777788999999999999876667778888888888877433
No 62
>KOG0404|consensus
Probab=99.95 E-value=1.1e-26 Score=191.50 Aligned_cols=281 Identities=19% Similarity=0.231 Sum_probs=195.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.+.+|+|||+||++.+||+++++..++-++||--- .|| .-++-.+.+...+..|+.|| +-...
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~-~~~----------i~pGGQLtTTT~veNfPGFP------dgi~G 69 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM-ANG----------IAPGGQLTTTTDVENFPGFP------DGITG 69 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEeeee-ccC----------cCCCceeeeeeccccCCCCC------ccccc
Confidence 45689999999999999999999999999999421 111 12223333333334444332 23346
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC----CCCCceec
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG----YFSGEILH 161 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g----~~~g~~~~ 161 (433)
.++.+-+++.+.++|.+ .+...|.+++.....|.+.++.+ .+.+|.||+|||+ ..+...+|| .|..+-+.
T Consensus 70 ~~l~d~mrkqs~r~Gt~---i~tEtVskv~~sskpF~l~td~~-~v~~~avI~atGA--sAkRl~~pg~ge~~fWqrGiS 143 (322)
T KOG0404|consen 70 PELMDKMRKQSERFGTE---IITETVSKVDLSSKPFKLWTDAR-PVTADAVILATGA--SAKRLHLPGEGEGEFWQRGIS 143 (322)
T ss_pred HHHHHHHHHHHHhhcce---eeeeehhhccccCCCeEEEecCC-ceeeeeEEEeccc--ceeeeecCCCCcchHHhcccc
Confidence 89999999999999973 44567889988888899988654 6999999999999 666666666 36677788
Q ss_pred cCCCCCCCC--CCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHH
Q psy2398 162 SMDYKSPDQ--IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY 239 (433)
Q Consensus 162 ~~~~~~~~~--~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 239 (433)
++..++... |++|.++|||||.||+|-|..|.+.+++|++++|+.++... +.
T Consensus 144 aCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs--------------------------~~ 197 (322)
T KOG0404|consen 144 ACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRAS--------------------------KI 197 (322)
T ss_pred hhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHH--------------------------HH
Confidence 888888875 89999999999999999999999999999999999864222 11
Q ss_pred HHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCeEEecCCceeeccEEEEccCCCCC
Q psy2398 240 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRH 319 (433)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~~dG~~~~~D~vi~atG~~~~ 319 (433)
+ .++...++.- ....+....+++..+++.-.-.| +.+...+-+.++++-++++.|-.|+
T Consensus 198 M---q~ra~~npnI-------------~v~~nt~~~ea~gd~~~l~~l~i-----kn~~tge~~dl~v~GlFf~IGH~Pa 256 (322)
T KOG0404|consen 198 M---QQRAEKNPNI-------------EVLYNTVAVEALGDGKLLNGLRI-----KNVKTGEETDLPVSGLFFAIGHSPA 256 (322)
T ss_pred H---HHHHhcCCCe-------------EEEechhhhhhccCcccccceEE-----EecccCcccccccceeEEEecCCch
Confidence 1 1111111100 01112222333333221110011 1111122245899999999999999
Q ss_pred CCCCCcccccc-cCCccccccccccCCCCcEEEEccccc
Q psy2398 320 FPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNA 357 (433)
Q Consensus 320 ~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~ 357 (433)
+.||+. .++. ..+++....+...+++|++|++||++.
T Consensus 257 t~~l~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD 294 (322)
T KOG0404|consen 257 TKFLKG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQD 294 (322)
T ss_pred hhHhcC-ceeeccCceEEeccCcccccccceeeccccch
Confidence 999985 4444 445666666788899999999999985
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.94 E-value=1.9e-25 Score=234.14 Aligned_cols=293 Identities=19% Similarity=0.219 Sum_probs=178.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
.++|+||||||+||++|..|++.|++|+|||+.+.+||...+..| .+....
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip-----------------------------~~rl~~ 480 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIP-----------------------------SFRLPR 480 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCC-----------------------------ccCCCH
Confidence 479999999999999999999999999999999999887665411 122234
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC-cEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-KKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDY 165 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g-~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~~ 165 (433)
++.+...+....+|+ ++++++.+ . . .++..+- ....||+||+|||++ .|+.+++||...+.+++..++
T Consensus 481 e~~~~~~~~l~~~Gv--~~~~~~~v-g-----~--~~~~~~l~~~~~yDaViIATGa~-~pr~l~IpG~~l~gV~~a~~f 549 (1006)
T PRK12775 481 DIIDREVQRLVDIGV--KIETNKVI-G-----K--TFTVPQLMNDKGFDAVFLGVGAG-APTFLGIPGEFAGQVYSANEF 549 (1006)
T ss_pred HHHHHHHHHHHHCCC--EEEeCCcc-C-----C--ccCHHHHhhccCCCEEEEecCCC-CCCCCCCCCcCCCCcEEHHHH
Confidence 555556666777787 47777543 1 1 1221111 124699999999984 478888998322333333211
Q ss_pred --------------CCCCCCCCCeEEEEcCCCCHHHHHHHHhccCC-cEEEEEecCceeecccCCCCChhHHhHhhchhh
Q psy2398 166 --------------KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF 230 (433)
Q Consensus 166 --------------~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~ 230 (433)
.+.....+|+|+|||+|++|+|+|..+.+.|. +|+++.|+....+|. ..
T Consensus 550 L~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a----------------~~ 613 (1006)
T PRK12775 550 LTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPA----------------RI 613 (1006)
T ss_pred HHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCC----------------CH
Confidence 11223468999999999999999999998865 588888876432221 10
Q ss_pred cCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcc--cCCCeee-cC-C--ceeee--CCeEEecCC
Q psy2398 231 SSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI--GHGDILP-KD-D--IKNLN--GNIVHFVDD 302 (433)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~-~~-~--v~~~~--~~~v~~~dG 302 (433)
...+... ..|+. ........+.. .+|+++- .- . ....+ +...-..+|
T Consensus 614 -------~e~~~a~--------eeGI~----------~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g 668 (1006)
T PRK12775 614 -------EEIRHAK--------EEGID----------FFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTG 668 (1006)
T ss_pred -------HHHHHHH--------hCCCE----------EEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCC
Confidence 0001000 00110 00000001111 0122210 00 0 00000 100001123
Q ss_pred c--eeeccEEEEccCCCCCCCCCCc-cccccc-CCcccccc----ccccCCCCcEEEEccccccCChhhHHHHHHHHHHH
Q psy2398 303 T--HIEVDTIIYATGYNRHFPFIDK-EKLEWK-LGIPDLFI----HIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRS 374 (433)
Q Consensus 303 ~--~~~~D~vi~atG~~~~~~~l~~-~~~~~~-~~~~~~~~----~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~ 374 (433)
+ ++++|.||+|+|++|+..++.. ..+..+ .+.+.+++ ..+.|+.|+||++||+...+..+..|..+++.+|.
T Consensus 669 ~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~ 748 (1006)
T PRK12775 669 EFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGATVILAMGAGRRAAR 748 (1006)
T ss_pred ceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCccHHHHHHHHHHHHHH
Confidence 3 5899999999999999776543 233332 34444443 36789999999999998766777788899999888
Q ss_pred HHhhhh
Q psy2398 375 YIQAFI 380 (433)
Q Consensus 375 ~i~g~~ 380 (433)
.|...+
T Consensus 749 ~I~~~L 754 (1006)
T PRK12775 749 SIATYL 754 (1006)
T ss_pred HHHHHH
Confidence 875543
No 64
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.94 E-value=1.8e-24 Score=211.21 Aligned_cols=291 Identities=18% Similarity=0.234 Sum_probs=175.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+||||||+|+++|..|++.|++|+++|+.+.+||.+.+..+ .+...
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip-----------------------------~~~~~ 190 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIP-----------------------------SFKLD 190 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCc-----------------------------cccCC
Confidence 3478999999999999999999999999999999999987765411 11112
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCceeccC-
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM- 163 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~~~- 163 (433)
.++.+...+.++.+|+ .+++++.|.. .++..+ ....||.||+|||+.. +..++++| ...+ +.+..
T Consensus 191 ~~~~~~~~~~~~~~Gv--~~~~~~~v~~--------~~~~~~-~~~~~D~vilAtGa~~-~~~~~i~g~~~~g-V~~a~~ 257 (467)
T TIGR01318 191 KAVLSRRREIFTAMGI--EFHLNCEVGR--------DISLDD-LLEDYDAVFLGVGTYR-SMRGGLPGEDAPG-VLQALP 257 (467)
T ss_pred HHHHHHHHHHHHHCCC--EEECCCEeCC--------ccCHHH-HHhcCCEEEEEeCCCC-CCcCCCCCcCCCC-cEEHHH
Confidence 3455666667778887 5777876622 111111 1247999999999842 23456777 3222 21110
Q ss_pred ----------CCC-----CCCCCCCCeEEEEcCCCCHHHHHHHHhccC-CcEEEEEecCceeecccCCCCChhHHhHhhc
Q psy2398 164 ----------DYK-----SPDQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLG 227 (433)
Q Consensus 164 ----------~~~-----~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~-~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p 227 (433)
... ......+++++|||+|.+|+|.|..+.+.+ ++||+++|++...+|...
T Consensus 258 ~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~------------- 324 (467)
T TIGR01318 258 FLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSR------------- 324 (467)
T ss_pred HHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCH-------------
Confidence 000 111246899999999999999999998887 579999998754333210
Q ss_pred hhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhccc--CCCee---ec-CCceeeeCCe---EE
Q psy2398 228 NKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIG--HGDIL---PK-DDIKNLNGNI---VH 298 (433)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~---~~-~~v~~~~~~~---v~ 298 (433)
...+... ..|+. ...+....+... .+++. +. ......+.++ ..
T Consensus 325 ----------~e~~~~~--------~~GV~----------~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~ 376 (467)
T TIGR01318 325 ----------REVANAR--------EEGVE----------FLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPV 376 (467)
T ss_pred ----------HHHHHHH--------hcCCE----------EEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccce
Confidence 1111100 01110 000000000000 11111 00 0000000000 00
Q ss_pred ecCC--ceeeccEEEEccCCCCCC-CCCCccccccc-CCcccccc---ccccCCCCcEEEEccccccCChhhHHHHHHHH
Q psy2398 299 FVDD--THIEVDTIIYATGYNRHF-PFIDKEKLEWK-LGIPDLFI---HIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQF 371 (433)
Q Consensus 299 ~~dG--~~~~~D~vi~atG~~~~~-~~l~~~~~~~~-~~~~~~~~---~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~ 371 (433)
..+| .++++|.||+|+|++|+. .++....+..+ .+.+.++. ..+.++.|+||++||+......+..|..||+.
T Consensus 377 ~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~~~~~Ai~~G~~ 456 (467)
T TIGR01318 377 PVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGADLVVTAVAEGRQ 456 (467)
T ss_pred ecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCccHHHHHHHHHHH
Confidence 1122 358999999999999984 56654444443 34454442 34578899999999998766677789999999
Q ss_pred HHHHHhhh
Q psy2398 372 IRSYIQAF 379 (433)
Q Consensus 372 ~a~~i~g~ 379 (433)
+|.+|..-
T Consensus 457 aA~~i~~~ 464 (467)
T TIGR01318 457 AAQGILDW 464 (467)
T ss_pred HHHHHHHH
Confidence 99988654
No 65
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.94 E-value=1.3e-24 Score=221.04 Aligned_cols=293 Identities=18% Similarity=0.225 Sum_probs=176.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+||||||+||++|..|++.|++|+|||+.+.+||.+.+..+ .+...
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip-----------------------------~~~l~ 376 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIP-----------------------------AFKLD 376 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCC-----------------------------CccCC
Confidence 3579999999999999999999999999999999999998776411 11112
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCcee----
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEIL---- 160 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~---- 160 (433)
.++.+...+.++.+|+ .+++++.|.. .++..+ ....||.||+|||++ .+..+.++| ...|...
T Consensus 377 ~~~~~~~~~~~~~~Gv--~~~~~~~v~~--------~i~~~~-~~~~~DavilAtGa~-~~~~l~i~g~~~~Gv~~a~~~ 444 (654)
T PRK12769 377 KSLLARRREIFSAMGI--EFELNCEVGK--------DISLES-LLEDYDAVFVGVGTY-RSMKAGLPNEDAPGVYDALPF 444 (654)
T ss_pred HHHHHHHHHHHHHCCe--EEECCCEeCC--------cCCHHH-HHhcCCEEEEeCCCC-CCCCCCCCCCCCCCeEEhHHH
Confidence 3344444556677777 4777776521 111111 124799999999985 344556666 3333110
Q ss_pred ------ccCCCC---C--CCCCCCCeEEEEcCCCCHHHHHHHHhccC-CcEEEEEecCceeecccCCCCChhHHhHhhch
Q psy2398 161 ------HSMDYK---S--PDQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGN 228 (433)
Q Consensus 161 ------~~~~~~---~--~~~~~~~~v~VvG~G~sg~d~a~~l~~~~-~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~ 228 (433)
+..... . ...+.+++|+|||+|.+|+|+|..+.+.+ ++|+++.|++...+|.. +
T Consensus 445 l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~----~---------- 510 (654)
T PRK12769 445 LIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGS----K---------- 510 (654)
T ss_pred HHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCC----H----------
Confidence 000010 0 01356899999999999999999988886 47999998864333311 0
Q ss_pred hhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcc--cCCCee-ecC---Cceeee--CC-eEEe
Q psy2398 229 KFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI--GHGDIL-PKD---DIKNLN--GN-IVHF 299 (433)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~-~~~---~v~~~~--~~-~v~~ 299 (433)
...+... ..|+. ...+....+.. ..+++. +.- .....+ +. ....
T Consensus 511 ---------~e~~~~~--------~~Gv~----------~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~ 563 (654)
T PRK12769 511 ---------KEVKNAR--------EEGAN----------FEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVP 563 (654)
T ss_pred ---------HHHHHHH--------HcCCe----------EEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCccee
Confidence 1111111 00110 00000001111 011221 000 000000 00 0111
Q ss_pred cCCc--eeeccEEEEccCCCCCC-CCCCccccccc-CCccccccc---cccCCCCcEEEEccccccCChhhHHHHHHHHH
Q psy2398 300 VDDT--HIEVDTIIYATGYNRHF-PFIDKEKLEWK-LGIPDLFIH---IAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFI 372 (433)
Q Consensus 300 ~dG~--~~~~D~vi~atG~~~~~-~~l~~~~~~~~-~~~~~~~~~---~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~ 372 (433)
..|+ ++++|.||+|+|++|+. .+++...+..+ .+.+.++.. .+.|+.|+||++||+...+.++..|..||+.+
T Consensus 564 ~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~A 643 (654)
T PRK12769 564 IPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVVTAMAEGRHA 643 (654)
T ss_pred CCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCcHHHHHHHHHHHH
Confidence 1233 58999999999999984 56665555553 344444432 36789999999999987777778899999999
Q ss_pred HHHHhhhh
Q psy2398 373 RSYIQAFI 380 (433)
Q Consensus 373 a~~i~g~~ 380 (433)
|..|..-+
T Consensus 644 A~~I~~~L 651 (654)
T PRK12769 644 AQGIIDWL 651 (654)
T ss_pred HHHHHHHh
Confidence 99987544
No 66
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.94 E-value=5.2e-25 Score=215.76 Aligned_cols=287 Identities=16% Similarity=0.199 Sum_probs=172.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.+..+ .+...
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip-----------------------------~~~~~ 192 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIP-----------------------------DFKLE 192 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCC-----------------------------cccCC
Confidence 3479999999999999999999999999999999999987765411 11112
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCceeccC-
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM- 163 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~~~- 163 (433)
.++.+...+.+..+++ .+++++.+.. + ++. +.....||.||+|||+. .++.++++| ...+ +.+..
T Consensus 193 ~~~~~~~~~~~~~~gv--~~~~~~~v~~-~-------~~~-~~~~~~~d~vvlAtGa~-~~~~l~ipG~~~~g-V~~~~~ 259 (471)
T PRK12810 193 KEVIDRRIELMEAEGI--EFRTNVEVGK-D-------ITA-EELLAEYDAVFLGTGAY-KPRDLGIPGRDLDG-VHFAMD 259 (471)
T ss_pred HHHHHHHHHHHHhCCc--EEEeCCEECC-c-------CCH-HHHHhhCCEEEEecCCC-CCCcCCCCCccCCC-cEEHHH
Confidence 3344444556667777 4777776521 1 111 11125799999999984 366677887 3332 22110
Q ss_pred ------------CCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccC-CcEEEEEecCceeecccCCCCChhHHhHhhchhh
Q psy2398 164 ------------DYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF 230 (433)
Q Consensus 164 ------------~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~-~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~ 230 (433)
.........+++|+|||+|++|+|+|..+.+.+ ++|+...+.+. |....... . .+|.+.
T Consensus 260 ~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~---~~~~~~~~--~---~~~~~~ 331 (471)
T PRK12810 260 FLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPM---PPSRRNKN--N---PWPYWP 331 (471)
T ss_pred HHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCC---Cccccccc--c---CCcccc
Confidence 011112356899999999999999999888876 47885443321 11100000 0 000000
Q ss_pred cCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeC----------CeEEec
Q psy2398 231 SSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG----------NIVHFV 300 (433)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~----------~~v~~~ 300 (433)
.. ...+... ..++ .+.....+.++.+ ..+.+.
T Consensus 332 ~~-----~~~~~~~--------~~GV-------------------------~i~~~~~~~~i~~~~g~v~~V~~~~~~~~ 373 (471)
T PRK12810 332 MK-----LEVSNAH--------EEGV-------------------------EREFNVQTKEFEGENGKVTGVKVVRTELG 373 (471)
T ss_pred hH-----HHHHHHH--------HcCC-------------------------eEEeccCceEEEccCCEEEEEEEEEEEec
Confidence 00 0011100 0011 1111222222221 111122
Q ss_pred CC---------ceeeccEEEEccCCCCCC-CCCCccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHH
Q psy2398 301 DD---------THIEVDTIIYATGYNRHF-PFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQG 369 (433)
Q Consensus 301 dG---------~~~~~D~vi~atG~~~~~-~~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa 369 (433)
+| .++++|.||+|+|++|+. .+++...+..+ .+.+.+++..+.++.|+||++||+......+..|..||
T Consensus 374 ~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~~~~~Av~~G 453 (471)
T PRK12810 374 EGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSLVVWAIAEG 453 (471)
T ss_pred CCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCchhHHHHHHHH
Confidence 22 358999999999999985 46664445443 34555553456789999999999987555667788899
Q ss_pred HHHHHHHhhhh
Q psy2398 370 QFIRSYIQAFI 380 (433)
Q Consensus 370 ~~~a~~i~g~~ 380 (433)
+.+|..|...+
T Consensus 454 ~~AA~~i~~~L 464 (471)
T PRK12810 454 RQAARAIDAYL 464 (471)
T ss_pred HHHHHHHHHHH
Confidence 88888775443
No 67
>KOG1335|consensus
Probab=99.93 E-value=2.4e-25 Score=197.66 Aligned_cols=311 Identities=16% Similarity=0.174 Sum_probs=195.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCccc-CCC-----CCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQ-VPD-----YPMPDNY 79 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~ 79 (433)
..+||+|||+||+|..||.+.++.|++.+|+|++..+||+|.... |.|+..+...+.++. ... ....-.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvG----cIPSKALL~nSh~yh~~q~~~~~~rGi~vs- 112 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVG----CIPSKALLNNSHLYHEAQHEDFASRGIDVS- 112 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeecc----ccccHHHhhhhHHHHHHhhhHHHhcCcccc-
Confidence 458999999999999999999999999999999999999999873 344443322222221 100 000000
Q ss_pred CCCCCHHHHHHHHHHHHHHc--CCCcceEeCcEEEEEEEe-----CCeEEEEEccC--cEEEeCEEEEccCCCCCCCCCC
Q psy2398 80 PVYPNHSMMLDYLRSYAKKF--DVYNHSIFNTEVINLEQY-----EDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPN 150 (433)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~~--~~~~~i~~~~~V~~v~~~-----~~~~~v~~~~g--~~~~~d~vIvAtG~~s~p~~p~ 150 (433)
+--...+.++......++.+ ++. +.+-..+|+.+.-. .+...+...+| ..+.++++|+|||+ .+++
T Consensus 113 ~~~~dl~~~~~~k~~~vk~Lt~gi~-~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGS----eV~~ 187 (506)
T KOG1335|consen 113 SVSLDLQAMMKAKDNAVKQLTGGIE-NLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGS----EVTP 187 (506)
T ss_pred ceecCHHHHHHHHHHHHHHHhhHHH-HHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCC----ccCC
Confidence 11122344444444444443 121 11223345544432 45556665555 35899999999998 5667
Q ss_pred CCC-CCCC-ceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhch
Q psy2398 151 YSG-YFSG-EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGN 228 (433)
Q Consensus 151 i~g-~~~g-~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~ 228 (433)
+|| +..+ .++.|......... .++++|||+|.+|.|+..-+.+.|.+||++.-.+. +.+.
T Consensus 188 ~PGI~IDekkIVSStgALsL~~v-Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~-i~~~---------------- 249 (506)
T KOG1335|consen 188 FPGITIDEKKIVSSTGALSLKEV-PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQ-IGGV---------------- 249 (506)
T ss_pred CCCeEecCceEEecCCccchhhC-cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhh-hccc----------------
Confidence 778 4444 44444444444443 78999999999999999999999999999985443 1111
Q ss_pred hhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee--CC---eEEe---c
Q psy2398 229 KFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN--GN---IVHF---V 300 (433)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~--~~---~v~~---~ 300 (433)
+.. |..+..++++ .. .++ ...+.+.+...+ +. .|.+ +
T Consensus 250 -mD~--Eisk~~qr~L---~k----Qgi-------------------------kF~l~tkv~~a~~~~dg~v~i~ve~ak 294 (506)
T KOG1335|consen 250 -MDG--EISKAFQRVL---QK----QGI-------------------------KFKLGTKVTSATRNGDGPVEIEVENAK 294 (506)
T ss_pred -cCH--HHHHHHHHHH---Hh----cCc-------------------------eeEeccEEEEeeccCCCceEEEEEecC
Confidence 111 1112222222 11 111 111222222221 11 2222 2
Q ss_pred CCc--eeeccEEEEccCCCCCCCCCCcccccc--c-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHH
Q psy2398 301 DDT--HIEVDTIIYATGYNRHFPFIDKEKLEW--K-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSY 375 (433)
Q Consensus 301 dG~--~~~~D~vi~atG~~~~~~~l~~~~~~~--~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~ 375 (433)
+|+ +++||+++.|+|++|-+.-|+.+.+.. + .+++.+. ..|.+.+|+||+|||+...+.+.+-||.|+..+.+.
T Consensus 295 ~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~-~~f~t~vP~i~~IGDv~~gpMLAhkAeeegI~~VE~ 373 (506)
T KOG1335|consen 295 TGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVN-TRFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEG 373 (506)
T ss_pred CCceeEEEeeEEEEEccCcccccCCChhhcccccccccceecc-ccccccCCceEEecccCCcchhhhhhhhhchhheee
Confidence 333 489999999999999888777554333 2 3344444 456888999999999999888999999999999999
Q ss_pred Hhhhh
Q psy2398 376 IQAFI 380 (433)
Q Consensus 376 i~g~~ 380 (433)
|.|..
T Consensus 374 i~g~~ 378 (506)
T KOG1335|consen 374 IAGGH 378 (506)
T ss_pred ecccC
Confidence 98773
No 68
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.93 E-value=6e-25 Score=213.87 Aligned_cols=231 Identities=17% Similarity=0.230 Sum_probs=157.7
Q ss_pred HHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc-CcEEE--eCEEEEccCCCCCCCCCCCCCCCCCceeccCCCCCC-
Q psy2398 93 RSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN-GKKKK--YDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSP- 168 (433)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~-g~~~~--~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~~~~~- 168 (433)
+.+.+++++ +++++++|+.++.+++.+.+...+ +..+. ||+||+|||+ .|+.|+++|.-...+.+.....+.
T Consensus 51 ~~~~~~~gv--~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~--~p~~~~i~G~~~~~v~~~~~~~~~~ 126 (427)
T TIGR03385 51 EVFIKKRGI--DVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGA--SPIVPNIEGINLDIVFTLRNLEDTD 126 (427)
T ss_pred HHHHHhcCC--eEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCC--CCCCCCCCCcCCCCEEEECCHHHHH
Confidence 345577787 477899999998877766665432 34677 9999999998 888899988211222222221111
Q ss_pred ------CCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHH
Q psy2398 169 ------DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQ 242 (433)
Q Consensus 169 ------~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 242 (433)
....+++|+|||+|.+|+|+|..|.+.+.+|+++.+.+....+.. +..+.. .+.+
T Consensus 127 ~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~-------------~~~~~~-----~~~~- 187 (427)
T TIGR03385 127 AIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLF-------------DEEMNQ-----IVEE- 187 (427)
T ss_pred HHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcccc-------------CHHHHH-----HHHH-
Confidence 023578999999999999999999999999999998764321110 011111 1111
Q ss_pred HHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCe--EEecCCceeeccEEEEccCCCCCC
Q psy2398 243 VFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNI--VHFVDDTHIEVDTIIYATGYNRHF 320 (433)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~--v~~~dG~~~~~D~vi~atG~~~~~ 320 (433)
.+. ..++ ++.....++++.... +.+.+|+++++|.+|+|+|++|+.
T Consensus 188 ---~l~----~~gV-------------------------~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 235 (427)
T TIGR03385 188 ---ELK----KHEI-------------------------NLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNS 235 (427)
T ss_pred ---HHH----HcCC-------------------------EEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCH
Confidence 111 1111 233345566665432 367889999999999999999999
Q ss_pred CCCCccccccc-CCccccccccccCCCCcEEEEcccccc----------CChhhHHHHHHHHHHHHHhhh
Q psy2398 321 PFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 321 ~~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~----------~~~~~~a~~qa~~~a~~i~g~ 379 (433)
++++...+..+ .+++.+++. +.++.|+||++||+... ...++.|..||+.+|++|.|.
T Consensus 236 ~~l~~~gl~~~~~G~i~vd~~-~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~ 304 (427)
T TIGR03385 236 ELAKDSGLKLGETGAIWVNEK-FQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGN 304 (427)
T ss_pred HHHHhcCcccCCCCCEEECCC-cEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCC
Confidence 88876555553 356666655 56889999999999852 235678999999999999885
No 69
>KOG2495|consensus
Probab=99.93 E-value=2.1e-24 Score=194.94 Aligned_cols=293 Identities=15% Similarity=0.176 Sum_probs=188.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
.++++|+|+|+|.+|.+.++.|-..-++|+|+.++..+--+|. .|+. --+-..
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPL---------------LpS~------------~vGTve 105 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPL---------------LPST------------TVGTVE 105 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeec---------------cCCc------------ccccee
Confidence 3568999999999999999999998899999998764311111 1110 012223
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEE--ccC----cEEEeCEEEEccCCCCCCCCCCCCC-----
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL--SNG----KKKKYDFIAVCNGAQRVARYPNYSG----- 153 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~--~~g----~~~~~d~vIvAtG~~s~p~~p~i~g----- 153 (433)
-..+.+.+...+.+.+.. .-.+..+...|+++.+...+.. .++ -.+.||++|+|+|+ .++.+.+||
T Consensus 106 ~rSIvEPIr~i~r~k~~~-~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA--~~~TFgipGV~e~~ 182 (491)
T KOG2495|consen 106 LRSIVEPIRAIARKKNGE-VKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGA--EPNTFGIPGVEENA 182 (491)
T ss_pred ehhhhhhHHHHhhccCCC-ceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccC--CCCCCCCCchhhch
Confidence 455677777777765432 2334666777877666555442 233 24889999999999 889999998
Q ss_pred CCCCceeccCCCCC-------------C---CCCCCCeEEEEcCCCCHHHHHHHHhcc--------------CCcEEEEE
Q psy2398 154 YFSGEILHSMDYKS-------------P---DQIRNKRVLVVGAGNSGCDIAVDASHH--------------SEKVYHST 203 (433)
Q Consensus 154 ~~~g~~~~~~~~~~-------------~---~~~~~~~v~VvG~G~sg~d~a~~l~~~--------------~~~V~~~~ 203 (433)
.|...+-++..++. . +..+=-+++|||||++|+|+|.+|+.. --+||++.
T Consensus 183 ~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiE 262 (491)
T KOG2495|consen 183 HFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIE 262 (491)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeec
Confidence 34433333333311 0 111123799999999999999999875 12466655
Q ss_pred ecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCe
Q psy2398 204 RRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDI 283 (433)
Q Consensus 204 r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 283 (433)
..+. .+ +++.. ++.+...+.+ .+.++ .+
T Consensus 263 A~d~--------------iL----~mFdk-----rl~~yae~~f----~~~~I-------------------------~~ 290 (491)
T KOG2495|consen 263 AADH--------------IL----NMFDK-----RLVEYAENQF----VRDGI-------------------------DL 290 (491)
T ss_pred cchh--------------HH----HHHHH-----HHHHHHHHHh----hhccc-------------------------ee
Confidence 4432 11 11111 1211111111 11111 34
Q ss_pred eecCCceeeeCCeEEecCC----ceeeccEEEEccCCCCCCCCCCcccccc-c--CCccccccccccCCCCcEEEEcccc
Q psy2398 284 LPKDDIKNLNGNIVHFVDD----THIEVDTIIYATGYNRHFPFIDKEKLEW-K--LGIPDLFIHIAPRNLDNIFFFGFVN 356 (433)
Q Consensus 284 ~~~~~v~~~~~~~v~~~dG----~~~~~D~vi~atG~~~~~~~l~~~~~~~-~--~~~~~~~~~~~~~~~p~i~~iG~~~ 356 (433)
.....|+.++++.++.+++ +++++-+++|+||..+. |+........ + +.++.+++.+..++.+||||||||+
T Consensus 291 ~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca 369 (491)
T KOG2495|consen 291 DTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCA 369 (491)
T ss_pred ecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCc-hhhhhHhhcCCccCceeeeeeceeeccCcCceEEecccc
Confidence 4456688888888887655 56889999999999997 5443211111 1 2356778888889999999999999
Q ss_pred cc---CChhhHHHHHHHHHHHHHhhhh
Q psy2398 357 AA---AGLGDGLRLQGQFIRSYIQAFI 380 (433)
Q Consensus 357 ~~---~~~~~~a~~qa~~~a~~i~g~~ 380 (433)
.. .+..+.|++||.|+|++|.-..
T Consensus 370 ~~~~~~~tAQVA~QqG~yLAk~fn~m~ 396 (491)
T KOG2495|consen 370 DQRGLKPTAQVAEQQGAYLAKNFNKMG 396 (491)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHh
Confidence 43 3567899999999999996544
No 70
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.92 E-value=1.3e-23 Score=205.96 Aligned_cols=307 Identities=15% Similarity=0.158 Sum_probs=175.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
.++|+|||||++|+++|..|++.|++|++||+.+.+||...+..+ .+....
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip-----------------------------~~~~~~ 193 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIP-----------------------------NMKLDK 193 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCC-----------------------------CccCCH
Confidence 379999999999999999999999999999999988887655411 111123
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCcee-----
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEIL----- 160 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~----- 160 (433)
++.....+.++.+++ .+++++.|. .+ ++. +.....||.||+|||+. .|..++++| ...+...
T Consensus 194 ~~~~~~~~~~~~~Gv--~~~~~~~v~-~~-------~~~-~~~~~~~d~VilAtGa~-~~~~l~i~G~~~~gV~~~~~~l 261 (485)
T TIGR01317 194 AIVDRRIDLLSAEGI--DFVTNTEIG-VD-------ISA-DELKEQFDAVVLAGGAT-KPRDLPIPGRELKGIHYAMEFL 261 (485)
T ss_pred HHHHHHHHHHHhCCC--EEECCCEeC-Cc-------cCH-HHHHhhCCEEEEccCCC-CCCcCCCCCcCCCCcEeHHHHH
Confidence 344444455666777 477777763 11 111 11235799999999984 377788888 3333111
Q ss_pred ccC--CCC-------CCCCCCCCeEEEEcCCCCHHHHHHHHhccC-CcEEEEEecCceeecccCCCCChhHHhHhhchhh
Q psy2398 161 HSM--DYK-------SPDQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF 230 (433)
Q Consensus 161 ~~~--~~~-------~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~-~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~ 230 (433)
+.. ... ......+|+|+|||+|++|+|.|..+.+.+ ++|+++.+.+.....+. ... .+|.+-
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~-~~~-------~~~~~~ 333 (485)
T TIGR01317 262 PSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARA-KDN-------PWPEWP 333 (485)
T ss_pred HHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcc-ccc-------CCCccc
Confidence 100 000 011256899999999999999988877765 68999987653210000 000 011110
Q ss_pred cCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccC--CCeeecC--Cce-eeeCCe---EEecCC
Q psy2398 231 SSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGH--GDILPKD--DIK-NLNGNI---VHFVDD 302 (433)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~--~v~-~~~~~~---v~~~dG 302 (433)
.. .+.....+... ...++. . ...+....+.... +++.-.. .++ ..+.++ .....|
T Consensus 334 ~~-~e~~~a~~e~~-------~~~gv~-----~----~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g 396 (485)
T TIGR01317 334 RV-YRVDYAHEEAA-------AHYGRD-----P----REYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPG 396 (485)
T ss_pred hh-hhhHHHHHhhh-------hhcCcc-----c----eEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCC
Confidence 00 00000011100 000000 0 0000001111111 1121000 000 000000 111122
Q ss_pred --ceeeccEEEEccCCC-CCCCCCCccccccc-CCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHHhh
Q psy2398 303 --THIEVDTIIYATGYN-RHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA 378 (433)
Q Consensus 303 --~~~~~D~vi~atG~~-~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i~g 378 (433)
.++++|.||+|+|.. |+.++++...+... .+.+...+..+.|+.|+||++||+.........|..|++.+|..|..
T Consensus 397 ~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~~ 476 (485)
T TIGR01317 397 SEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVDR 476 (485)
T ss_pred ceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 258999999999996 88888876555543 35555556667899999999999987666667788888888887754
Q ss_pred h
Q psy2398 379 F 379 (433)
Q Consensus 379 ~ 379 (433)
.
T Consensus 477 ~ 477 (485)
T TIGR01317 477 Y 477 (485)
T ss_pred H
Confidence 3
No 71
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.92 E-value=1.7e-23 Score=211.86 Aligned_cols=293 Identities=18% Similarity=0.266 Sum_probs=176.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+|||||++||++|..|++.|++|++||+.+.+||.+.+..+ .+.-.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip-----------------------------~~~l~ 359 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIP-----------------------------PFKLD 359 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCC-----------------------------cccCC
Confidence 3589999999999999999999999999999999999999887622 01111
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCcee----
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEIL---- 160 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~---- 160 (433)
.++.+...+.++.+|+ .+++++++.. .+++.+ ....||.|++|||++ .+..+.++| ...|...
T Consensus 360 ~~~~~~~~~~~~~~Gv--~~~~~~~v~~--------~~~~~~-l~~~~DaV~latGa~-~~~~~~i~g~~~~gv~~a~~~ 427 (639)
T PRK12809 360 KTVLSQRREIFTAMGI--DFHLNCEIGR--------DITFSD-LTSEYDAVFIGVGTY-GMMRADLPHEDAPGVIQALPF 427 (639)
T ss_pred HHHHHHHHHHHHHCCe--EEEcCCccCC--------cCCHHH-HHhcCCEEEEeCCCC-CCCCCCCCCCccCCcEeHHHH
Confidence 3444555566777787 4777776521 111212 235699999999985 344566777 3333211
Q ss_pred ------ccCCCCC-----CCCCCCCeEEEEcCCCCHHHHHHHHhccC-CcEEEEEecCceeecccCCCCChhHHhHhhch
Q psy2398 161 ------HSMDYKS-----PDQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGN 228 (433)
Q Consensus 161 ------~~~~~~~-----~~~~~~~~v~VvG~G~sg~d~a~~l~~~~-~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~ 228 (433)
....... .....+|+|+|+|+|.+|+|.|..+.+.| ++||++.|++...+|..
T Consensus 428 l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~--------------- 492 (639)
T PRK12809 428 LTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGS--------------- 492 (639)
T ss_pred HHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCC---------------
Confidence 0000111 12346899999999999999999888876 58999998864322211
Q ss_pred hhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcc--cCCCeeecC--Cce--ee--eCC-eEEe
Q psy2398 229 KFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI--GHGDILPKD--DIK--NL--NGN-IVHF 299 (433)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~--~v~--~~--~~~-~v~~ 299 (433)
.. .+.+ .. ..|+. ........+.. ..|++.... .++ +. ++. ....
T Consensus 493 ----~~---e~~~-a~--------~eGv~----------~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~ 546 (639)
T PRK12809 493 ----RK---EVVN-AR--------EEGVE----------FQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRP 546 (639)
T ss_pred ----HH---HHHH-HH--------HcCCe----------EEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCcccee
Confidence 00 0000 00 00110 00000000000 011221000 000 00 000 0111
Q ss_pred cCC--ceeeccEEEEccCCCCCC-CCCCccccccc-CCcccccc---ccccCCCCcEEEEccccccCChhhHHHHHHHHH
Q psy2398 300 VDD--THIEVDTIIYATGYNRHF-PFIDKEKLEWK-LGIPDLFI---HIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFI 372 (433)
Q Consensus 300 ~dG--~~~~~D~vi~atG~~~~~-~~l~~~~~~~~-~~~~~~~~---~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~ 372 (433)
..| .++++|.||+|+|++|+. .+++...+..+ .+.+.+++ ..+.|+.|+||++||+...+.++..|..||+.+
T Consensus 547 ~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~A 626 (639)
T PRK12809 547 VAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGRQA 626 (639)
T ss_pred cCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCchHHHHHHHHHHHH
Confidence 122 258999999999999964 56664444443 24444432 246789999999999987667777899999999
Q ss_pred HHHHhhhh
Q psy2398 373 RSYIQAFI 380 (433)
Q Consensus 373 a~~i~g~~ 380 (433)
|..|...+
T Consensus 627 A~~i~~~l 634 (639)
T PRK12809 627 ARDMLTLF 634 (639)
T ss_pred HHHHHHHH
Confidence 98887543
No 72
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.92 E-value=7.3e-25 Score=203.89 Aligned_cols=191 Identities=25% Similarity=0.390 Sum_probs=127.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcC-CCeEEEccCCCCCCcccCCCCCCccccceEeecC--CCcccCCCCCCCCCC----
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGN-INYDLYEMESDLGGVWNSQASCGRVYPSLHLISP--KFNTQVPDYPMPDNY---- 79 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g-~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---- 79 (433)
.+|+++||.||++|+.|..|.+.+ .++..||+++.. .|... .+.++..++.+ +.+..+.+-..+-.+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f--~Wh~g----mll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL 75 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF--SWHPG----MLLPGARMQVSFLKDLVTLRDPTSPFSFLNYL 75 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGG----G--SS-B-SS-TTSSSSTTT-TTSTTSHHHHH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC--CcCCc----cCCCCCccccccccccCcCcCCCCcccHHHHH
Confidence 479999999999999999999986 899999998766 67765 23444444443 233332221111111
Q ss_pred -------------CCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC----eEEEEEc----cCcEEEeCEEEE
Q psy2398 80 -------------PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED----IWEVELS----NGKKKKYDFIAV 138 (433)
Q Consensus 80 -------------~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~----~~~v~~~----~g~~~~~d~vIv 138 (433)
..+|++.++.+|+++.+++++. .++++++|+.|++..+ .|+|++. ++.++.++.||+
T Consensus 76 ~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~--~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVl 153 (341)
T PF13434_consen 76 HEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDN--QVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVL 153 (341)
T ss_dssp HHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTT--TEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE
T ss_pred HHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCC--ceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEE
Confidence 1568899999999999999874 5999999999998732 5999984 345799999999
Q ss_pred ccCCCCCCCCCCCCCCC--CCceeccCCCCCCC--CCCCCeEEEEcCCCCHHHHHHHHhccCC--cEEEEEecCc
Q psy2398 139 CNGAQRVARYPNYSGYF--SGEILHSMDYKSPD--QIRNKRVLVVGAGNSGCDIAVDASHHSE--KVYHSTRRGY 207 (433)
Q Consensus 139 AtG~~s~p~~p~i~g~~--~g~~~~~~~~~~~~--~~~~~~v~VvG~G~sg~d~a~~l~~~~~--~V~~~~r~~~ 207 (433)
|||. .|.+|+....+ ...++|+.++.... ..++++|+|||||.||+|++..|.+.+. +|+++.|++.
T Consensus 154 a~G~--~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 154 ATGG--QPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp ------EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred CcCC--CCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 9996 89998765522 47899999886553 5678899999999999999999999854 8999999875
No 73
>KOG1336|consensus
Probab=99.92 E-value=1.4e-23 Score=193.20 Aligned_cols=261 Identities=18% Similarity=0.227 Sum_probs=176.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC--CeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
...++|||+|++|..|+..+++.|. +++++-+...+ .+.++ ..+.++....
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~----pydr~---~Ls~~~~~~~-------------------- 126 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL----PYDRA---RLSKFLLTVG-------------------- 126 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC----cccch---hcccceeecc--------------------
Confidence 3679999999999999999999886 67777655432 11100 0011111111
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMD 164 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~ 164 (433)
.++..-..++.+..++ .+++++.|++++... .+|.+.+|+++.|+++++|||+ .++.|++||.....+ +.
T Consensus 127 -~~~a~r~~e~Yke~gI--e~~~~t~v~~~D~~~--K~l~~~~Ge~~kys~LilATGs--~~~~l~~pG~~~~nv---~~ 196 (478)
T KOG1336|consen 127 -EGLAKRTPEFYKEKGI--ELILGTSVVKADLAS--KTLVLGNGETLKYSKLIIATGS--SAKTLDIPGVELKNV---FY 196 (478)
T ss_pred -ccccccChhhHhhcCc--eEEEcceeEEeeccc--cEEEeCCCceeecceEEEeecC--ccccCCCCCccccce---ee
Confidence 1111111224555666 488899999998744 4788889999999999999999 899999999332222 22
Q ss_pred CCCCCC--------CCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHH
Q psy2398 165 YKSPDQ--------IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEET 236 (433)
Q Consensus 165 ~~~~~~--------~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~ 236 (433)
+++.++ -.++.|+++|+|..|+|+|.+|...+.+||++++.+. .+|+.. -..+++
T Consensus 197 ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~-~~~~lf------------~~~i~~---- 259 (478)
T KOG1336|consen 197 LREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPW-LLPRLF------------GPSIGQ---- 259 (478)
T ss_pred eccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCcc-chhhhh------------hHHHHH----
Confidence 333321 2367899999999999999999999999999998864 334311 011111
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCee--ecCCceeeeC------CeEEecCCceeecc
Q psy2398 237 MAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNG------NIVHFVDDTHIEVD 308 (433)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~v~~~~~------~~v~~~dG~~~~~D 308 (433)
. +.+.+.+..|+ ..+.+.++.+ ..|.+.||+++++|
T Consensus 260 -~-----------------------------------~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~ad 303 (478)
T KOG1336|consen 260 -F-----------------------------------YEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEAD 303 (478)
T ss_pred -H-----------------------------------HHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccC
Confidence 1 11122222333 3445555543 24678999999999
Q ss_pred EEEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEcccccc
Q psy2398 309 TIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA 358 (433)
Q Consensus 309 ~vi~atG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~ 358 (433)
.||+++|.+|+++++.......+.|++.++. .+.+++||||++||++..
T Consensus 304 lvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~-~f~t~~~~VyAiGDva~f 352 (478)
T KOG1336|consen 304 LVVVGIGIKPNTSFLEKGILLDSKGGIKVDE-FFQTSVPNVYAIGDVATF 352 (478)
T ss_pred eEEEeeccccccccccccceecccCCEeehh-ceeeccCCcccccceeec
Confidence 9999999999999998633333567777776 458889999999999964
No 74
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.92 E-value=1.8e-23 Score=209.56 Aligned_cols=275 Identities=21% Similarity=0.252 Sum_probs=173.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+||||||+||++|..|++.|++|+++|+.+.+||.+.+..+ .+.-.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip-----------------------------~~~~~ 186 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIP-----------------------------AYRLP 186 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCC-----------------------------CccCC
Confidence 3478999999999999999999999999999999999998765411 11111
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEE-EEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCceeccC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEV-INLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM 163 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V-~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~~~ 163 (433)
.++.+.-.+.+.++++ .+.+++.+ ..+..+ . ....||.||+|||+.. +..+.++| ...+. ++..
T Consensus 187 ~~~~~~~l~~~~~~Gv--~~~~~~~~~~~~~~~---------~-~~~~~D~Vi~AtG~~~-~~~~~i~g~~~~gv-~~~~ 252 (564)
T PRK12771 187 REVLDAEIQRILDLGV--EVRLGVRVGEDITLE---------Q-LEGEFDAVFVAIGAQL-GKRLPIPGEDAAGV-LDAV 252 (564)
T ss_pred HHHHHHHHHHHHHCCC--EEEeCCEECCcCCHH---------H-HHhhCCEEEEeeCCCC-CCcCCCCCCccCCc-EEHH
Confidence 2333434445666776 46667655 222110 0 1135899999999842 33445666 22222 1111
Q ss_pred CC-----CCCCCCCCCeEEEEcCCCCHHHHHHHHhccC-CcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHH
Q psy2398 164 DY-----KSPDQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM 237 (433)
Q Consensus 164 ~~-----~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~-~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~ 237 (433)
.+ .......+++|+|+|+|.+|+|.+..+.+.+ ++|+++.|.+...+|.. .
T Consensus 253 ~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~----------------~------- 309 (564)
T PRK12771 253 DFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAH----------------D------- 309 (564)
T ss_pred HHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCC----------------H-------
Confidence 11 1113445889999999999999999888886 78999998764222211 0
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC----------eEEe----c---
Q psy2398 238 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN----------IVHF----V--- 300 (433)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~----------~v~~----~--- 300 (433)
...+... . .++ ++.....+.++.+. .+.+ .
T Consensus 310 ~~~~~a~---~-----~GV-------------------------ki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~ 356 (564)
T PRK12771 310 EEIEEAL---R-----EGV-------------------------EINWLRTPVEIEGDENGATGLRVITVEKMELDEDGR 356 (564)
T ss_pred HHHHHHH---H-----cCC-------------------------EEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCC
Confidence 0011000 0 011 11111112222110 0000 1
Q ss_pred ----CC--ceeeccEEEEccCCCCCCCCCCc-ccccccCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHH
Q psy2398 301 ----DD--THIEVDTIIYATGYNRHFPFIDK-EKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIR 373 (433)
Q Consensus 301 ----dG--~~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a 373 (433)
+| .++++|.||+|+|++|+.++++. ..+..+.+.+.++...+.++.|+||++||+...+..+..|..||+.+|
T Consensus 357 ~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA 436 (564)
T PRK12771 357 PSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRTVTTAIGHGKKAA 436 (564)
T ss_pred eeecCCceEEEECCEEEECcCCCCchhhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCchHHHHHHHHHHHHH
Confidence 23 35899999999999999888874 334334566777776778999999999999876667778899999988
Q ss_pred HHHhhh
Q psy2398 374 SYIQAF 379 (433)
Q Consensus 374 ~~i~g~ 379 (433)
..|...
T Consensus 437 ~~i~~~ 442 (564)
T PRK12771 437 RNIDAF 442 (564)
T ss_pred HHHHHH
Confidence 887543
No 75
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.91 E-value=1.2e-22 Score=214.53 Aligned_cols=280 Identities=15% Similarity=0.162 Sum_probs=174.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
.+||+||||||+||+||..|++.|++|+|+|+.+.+||.+..... ..+. .+..
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~--------------------------~~~g-~~~~ 215 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAE--------------------------TIDG-KPAA 215 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeecccc--------------------------ccCC-ccHH
Confidence 479999999999999999999999999999999999997754310 0001 1223
Q ss_pred HHHHHHHHHHHHcC-CCcceEeCcEEEEEEEeCCeEEEE-----E----c----c-CcEEEeCEEEEccCCCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVE-----L----S----N-GKKKKYDFIAVCNGAQRVARYPNY 151 (433)
Q Consensus 87 ~~~~~l~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~v~-----~----~----~-g~~~~~d~vIvAtG~~s~p~~p~i 151 (433)
++.+-+.+.++.++ + .+..+++|..+........+. . . + -..+.||.||+|||+ .++.|++
T Consensus 216 ~~~~~~~~~l~~~~~v--~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa--~~r~~pi 291 (985)
T TIGR01372 216 DWAAATVAELTAMPEV--TLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGA--HERPLVF 291 (985)
T ss_pred HHHHHHHHHHhcCCCc--EEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCC--CCcCCCC
Confidence 33233333333343 4 477788888775421111110 0 0 0 115889999999999 7788888
Q ss_pred CC-CCCCceecc---CCCC-CCCCCCCCeEEEEcCCCCHHHHHHHHhccC-CcEEEEEecCceeecccCCCCChhHHhHh
Q psy2398 152 SG-YFSGEILHS---MDYK-SPDQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQ 225 (433)
Q Consensus 152 ~g-~~~g~~~~~---~~~~-~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~-~~V~~~~r~~~~~~p~~~~~~~~~~~~~~ 225 (433)
+| ...+ ++.. ..+. ......+++|+|||+|.+|+|+|..|++.| +.|+++.+++.. .+
T Consensus 292 pG~~~pg-V~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-~~-------------- 355 (985)
T TIGR01372 292 ANNDRPG-VMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-SP-------------- 355 (985)
T ss_pred CCCCCCC-cEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-hH--------------
Confidence 88 3333 2211 1111 112346899999999999999999999998 457777655320 00
Q ss_pred hchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCC----eEEec-
Q psy2398 226 LGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN----IVHFV- 300 (433)
Q Consensus 226 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~----~v~~~- 300 (433)
.+.+. +. ..++ .+.....+.++.+. .|.+.
T Consensus 356 ------------~l~~~----L~----~~GV-------------------------~i~~~~~v~~i~g~~~v~~V~l~~ 390 (985)
T TIGR01372 356 ------------EARAE----AR----ELGI-------------------------EVLTGHVVAATEGGKRVSGVAVAR 390 (985)
T ss_pred ------------HHHHH----HH----HcCC-------------------------EEEcCCeEEEEecCCcEEEEEEEe
Confidence 11111 10 0111 12223344455432 34443
Q ss_pred ---CCceeeccEEEEccCCCCCCCCCCcccc--cccCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHH
Q psy2398 301 ---DDTHIEVDTIIYATGYNRHFPFIDKEKL--EWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSY 375 (433)
Q Consensus 301 ---dG~~~~~D~vi~atG~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~ 375 (433)
+++++++|.|++++|++|+..++..... .++... ..+ .-.++.|+||++||+.... .+..|..+++.++..
T Consensus 391 ~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~-~~~--~~~t~v~gVyaaGD~~g~~-~~~~A~~eG~~Aa~~ 466 (985)
T TIGR01372 391 NGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAI-AAF--LPGDAVQGCILAGAANGLF-GLAAALADGAAAGAA 466 (985)
T ss_pred cCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeecccc-Cce--ecCCCCCCeEEeeccCCcc-CHHHHHHHHHHHHHH
Confidence 4567999999999999999888764432 222111 001 1136689999999998644 445689999999988
Q ss_pred HhhhhcC
Q psy2398 376 IQAFIRK 382 (433)
Q Consensus 376 i~g~~~l 382 (433)
+......
T Consensus 467 i~~~lg~ 473 (985)
T TIGR01372 467 AARAAGF 473 (985)
T ss_pred HHHHcCC
Confidence 8655543
No 76
>PRK13984 putative oxidoreductase; Provisional
Probab=99.91 E-value=2.6e-23 Score=210.36 Aligned_cols=289 Identities=19% Similarity=0.244 Sum_probs=169.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..++|+|||+|++|+++|..|++.|++|+|||+.+..||.+.+..+ .+...
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~-----------------------------~~~~~ 332 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIP-----------------------------SYRLP 332 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCC-----------------------------cccCC
Confidence 4578999999999999999999999999999999988887665411 11112
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCceeccCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMD 164 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~~~~ 164 (433)
.++.+...+.++++++ .+++++.|.. + ++.++ ....||+||+|||+. .|+.++++| ...+ +.++.+
T Consensus 333 ~~~~~~~~~~~~~~gv--~~~~~~~v~~-~-------~~~~~-~~~~yD~vilAtGa~-~~r~l~i~G~~~~g-v~~a~~ 399 (604)
T PRK13984 333 DEALDKDIAFIEALGV--KIHLNTRVGK-D-------IPLEE-LREKHDAVFLSTGFT-LGRSTRIPGTDHPD-VIQALP 399 (604)
T ss_pred HHHHHHHHHHHHHCCc--EEECCCEeCC-c-------CCHHH-HHhcCCEEEEEcCcC-CCccCCCCCcCCcC-eEeHHH
Confidence 3333444455666777 5777777631 1 11111 135799999999984 467778888 3222 222111
Q ss_pred CC---------CC-CCCCCCeEEEEcCCCCHHHHHHHHhccC------CcEEEEEec-CceeecccCCCCChhHHhHhhc
Q psy2398 165 YK---------SP-DQIRNKRVLVVGAGNSGCDIAVDASHHS------EKVYHSTRR-GYHYYPKFIDGKPTPQWMLQLG 227 (433)
Q Consensus 165 ~~---------~~-~~~~~~~v~VvG~G~sg~d~a~~l~~~~------~~V~~~~r~-~~~~~p~~~~~~~~~~~~~~~p 227 (433)
+. .. ....+++|+|||+|.+|+|+|..+++.+ .+|+++..+ ....+|
T Consensus 400 ~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~---------------- 463 (604)
T PRK13984 400 LLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMP---------------- 463 (604)
T ss_pred HHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCC----------------
Confidence 11 00 1124789999999999999999998864 367876432 111111
Q ss_pred hhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcc-cCCCeeec--CCceee-e--CC-eEEe-
Q psy2398 228 NKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI-GHGDILPK--DDIKNL-N--GN-IVHF- 299 (433)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~--~~v~~~-~--~~-~v~~- 299 (433)
... ...+... . .|+. ...+....+.. .+++++.. ..+... + +. ....
T Consensus 464 ~~~-------~e~~~~~---~-----~GV~----------i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~ 518 (604)
T PRK13984 464 ADM-------EEIEEGL---E-----EGVV----------IYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFD 518 (604)
T ss_pred CCH-------HHHHHHH---H-----cCCE----------EEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceec
Confidence 110 0011100 0 0110 00000000000 11222110 000000 0 00 0111
Q ss_pred -cCCceeeccEEEEccCCCCCCCCCCcc---cccccCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHH
Q psy2398 300 -VDDTHIEVDTIIYATGYNRHFPFIDKE---KLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSY 375 (433)
Q Consensus 300 -~dG~~~~~D~vi~atG~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~ 375 (433)
.++.++++|.||+|+|++|+.++|..+ .+..+.+.+.+++ .+.|+.|+||++||++..+. ...|..+|+.+|..
T Consensus 519 ~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~-~~~Ts~~gVfAaGD~~~~~~-~v~Ai~~G~~AA~~ 596 (604)
T PRK13984 519 ESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNE-YGQTSIPWLFAGGDIVHGPD-IIHGVADGYWAAEG 596 (604)
T ss_pred CCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCC-CCccCCCCEEEecCcCCchH-HHHHHHHHHHHHHH
Confidence 122469999999999999998887632 2333445555554 56889999999999987554 45789999999998
Q ss_pred Hhhh
Q psy2398 376 IQAF 379 (433)
Q Consensus 376 i~g~ 379 (433)
|...
T Consensus 597 I~~~ 600 (604)
T PRK13984 597 IDMY 600 (604)
T ss_pred HHHH
Confidence 8654
No 77
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.5e-23 Score=181.73 Aligned_cols=265 Identities=18% Similarity=0.206 Sum_probs=186.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCC--CC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYP--VY 82 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 82 (433)
...|||+|||+||+|.+||.+.++.|++.=++- ..+||+-..... -+++. ..
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT~~------------------------IENfIsv~~ 262 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDTMG------------------------IENFISVPE 262 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeeccccc------------------------hhheecccc
Confidence 356999999999999999999999999766654 246765443310 00111 12
Q ss_pred CCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe---CCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC--CCCC
Q psy2398 83 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY---EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSG 157 (433)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~---~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g--~~~g 157 (433)
...+++...+.+-.+++.+. +.--.+.+++.+. ++..+|++++|....++.||+|||+ ..+-..+|| +|..
T Consensus 263 teGpkl~~ale~Hv~~Y~vD--imn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGA--rWRn~nvPGE~e~rn 338 (520)
T COG3634 263 TEGPKLAAALEAHVKQYDVD--VMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGA--RWRNMNVPGEDEYRN 338 (520)
T ss_pred ccchHHHHHHHHHHhhcCch--hhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCc--chhcCCCCchHHHhh
Confidence 34677888888888888763 4333455666664 5678999999999999999999999 446667888 6777
Q ss_pred ceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHH
Q psy2398 158 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM 237 (433)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~ 237 (433)
+-+..|..++..-|+||+|+|||||+||+|.|.+|+....+||++.-.+..
T Consensus 339 KGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL----------------------------- 389 (520)
T COG3634 339 KGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL----------------------------- 389 (520)
T ss_pred CCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhh-----------------------------
Confidence 777778888998999999999999999999999999999999998744321
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeee--cCCceeeeCC-----eEEec---CCc--ee
Q psy2398 238 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN-----IVHFV---DDT--HI 305 (433)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~v~~~~~~-----~v~~~---dG~--~~ 305 (433)
+..+-+.+.+.. + .++++ +..-+++.++ ++.+. +|. .+
T Consensus 390 kAD~VLq~kl~s-l-----------------------------~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l 439 (520)
T COG3634 390 KADAVLQDKLRS-L-----------------------------PNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHL 439 (520)
T ss_pred hhHHHHHHHHhc-C-----------------------------CCcEEEecceeeEEecCCceecceEEEeccCCceeEE
Confidence 111111111110 0 03333 2233444332 23333 343 36
Q ss_pred eccEEEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEccccccC
Q psy2398 306 EVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA 359 (433)
Q Consensus 306 ~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~~ 359 (433)
+-+-|+.-.|.-||+.||+.. ++.+..+-.+.+....|+.|+||++|||...+
T Consensus 440 ~LeGvFVqIGL~PNT~WLkg~-vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~ 492 (520)
T COG3634 440 ELEGVFVQIGLLPNTEWLKGA-VELNRRGEIIVDARGETNVPGVFAAGDCTTVP 492 (520)
T ss_pred EeeeeEEEEecccChhHhhch-hhcCcCccEEEecCCCcCCCceeecCcccCCc
Confidence 778899999999999999855 55544455555556699999999999998643
No 78
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.91 E-value=5.6e-23 Score=198.27 Aligned_cols=161 Identities=24% Similarity=0.322 Sum_probs=109.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHh--cCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSE--GNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~--~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
..++|+||||||+||+||..|++ .|++|+|||+.+.+||...+.. .+.++
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gv----------------------------aP~~~ 76 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGV----------------------------APDHP 76 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeecc----------------------------CCCcc
Confidence 35789999999999999999987 6999999999999999877651 01233
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCCceecc
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHS 162 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g~~~~~ 162 (433)
....+...+..+.+..++ .++.+..|- ..++.++- ...||.||+|||+. .++.+++|| ...+ ++..
T Consensus 77 ~~k~v~~~~~~~~~~~~v--~~~~nv~vg--------~dvtl~~L-~~~yDaVIlAtGa~-~~~~l~IpG~d~~g-V~~a 143 (491)
T PLN02852 77 ETKNVTNQFSRVATDDRV--SFFGNVTLG--------RDVSLSEL-RDLYHVVVLAYGAE-SDRRLGIPGEDLPG-VLSA 143 (491)
T ss_pred hhHHHHHHHHHHHHHCCe--EEEcCEEEC--------ccccHHHH-hhhCCEEEEecCCC-CCCCCCCCCCCCCC-eEEH
Confidence 334455566666666555 344444431 12333332 24799999999984 235677887 3222 2222
Q ss_pred CCC----------CCC--CCCCCCeEEEEcCCCCHHHHHHHHhcc---------------------CCcEEEEEecCc
Q psy2398 163 MDY----------KSP--DQIRNKRVLVVGAGNSGCDIAVDASHH---------------------SEKVYHSTRRGY 207 (433)
Q Consensus 163 ~~~----------~~~--~~~~~~~v~VvG~G~sg~d~a~~l~~~---------------------~~~V~~~~r~~~ 207 (433)
.++ ... ....+++|+|||+|++|+|+|..|.+. .++|+++.|++.
T Consensus 144 ~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~ 221 (491)
T PLN02852 144 REFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGP 221 (491)
T ss_pred HHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCCh
Confidence 221 111 113589999999999999999998764 467999999984
No 79
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.89 E-value=3.7e-21 Score=173.76 Aligned_cols=194 Identities=21% Similarity=0.284 Sum_probs=141.9
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcC-CCeEEEccCCCCCCcccCCCCCCccccceEeecC--CCcccCCC--------
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGN-INYDLYEMESDLGGVWNSQASCGRVYPSLHLISP--KFNTQVPD-------- 72 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g-~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------- 72 (433)
+....|++.||-||+-|+.|..|.+.+ .++..+||.+.+ .|... .+.++..++.+ +.+.+..+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F--~WHpG----mllegstlQv~FlkDLVTl~~PTs~ySFL 75 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF--SWHPG----MLLEGSTLQVPFLKDLVTLVDPTSPYSFL 75 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC--CcCCC----cccCCccccccchhhhccccCCCCchHHH
Confidence 357799999999999999999999975 689999999887 78776 23444443332 11111111
Q ss_pred -C--------CCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe--CCeEE--EEEccCcEEEeCEEEEc
Q psy2398 73 -Y--------PMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY--EDIWE--VELSNGKKKKYDFIAVC 139 (433)
Q Consensus 73 -~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~--~~~~~--v~~~~g~~~~~d~vIvA 139 (433)
+ .+-.....++++.++.+|+++.+..+. .++|+++|+.|..- +.... +.+.++..++|+.||++
T Consensus 76 NYL~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~---~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg 152 (436)
T COG3486 76 NYLHEHGRLYEFLNYETFHIPRREYNDYCQWAASQLP---SLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLG 152 (436)
T ss_pred HHHHHcchHhhhhhhhcccccHHHHHHHHHHHHhhCC---ccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEc
Confidence 0 001111256889999999999999884 58999999977332 33333 55666778999999999
Q ss_pred cCCCCCCCCCCCCCCCC-CceeccCCCCCCC-CCCCCe-EEEEcCCCCHHHHHHHHhcc----CCcEEEEEecCce
Q psy2398 140 NGAQRVARYPNYSGYFS-GEILHSMDYKSPD-QIRNKR-VLVVGAGNSGCDIAVDASHH----SEKVYHSTRRGYH 208 (433)
Q Consensus 140 tG~~s~p~~p~i~g~~~-g~~~~~~~~~~~~-~~~~~~-v~VvG~G~sg~d~a~~l~~~----~~~V~~~~r~~~~ 208 (433)
+|. .|.+|+.-..+. ++++|+.++.... +..+++ |.|||+|.||+|+..+|... ..++.|+.|++.+
T Consensus 153 ~G~--~P~IP~~f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf 226 (436)
T COG3486 153 VGT--QPYIPPCFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGF 226 (436)
T ss_pred cCC--CcCCChHHhCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCC
Confidence 999 999996433333 4899999998553 445555 99999999999999999875 3468899998753
No 80
>KOG4716|consensus
Probab=99.88 E-value=1.7e-21 Score=170.57 Aligned_cols=321 Identities=15% Similarity=0.159 Sum_probs=184.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccC--CCCCCcccCCCC--CCccccceEeecCCC----cccCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEME--SDLGGVWNSQAS--CGRVYPSLHLISPKF----NTQVPDYPMP 76 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~--~~~Gg~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~ 76 (433)
+-.+|.+|||||.+||+||++.+..|.+|.|+|-- ...|..|..... +-.|.|...+...+. +.+-..+.+.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~ 96 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWN 96 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCC
Confidence 34689999999999999999999999999999831 124444444322 012333222222111 1111111111
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHHcCCCcceEe-CcEEEEEEEe---CCeEEEE--EccC--cEEEeCEEEEccCCCCCCC
Q psy2398 77 DNY-PVYPNHSMMLDYLRSYAKKFDVYNHSIF-NTEVINLEQY---EDIWEVE--LSNG--KKKKYDFIAVCNGAQRVAR 147 (433)
Q Consensus 77 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~~-~~~V~~v~~~---~~~~~v~--~~~g--~~~~~d~vIvAtG~~s~p~ 147 (433)
-.. .--..+..+.+-++......+-.-++.+ ..+|+.++-- .+..++. -..+ ..++++.++||||. +|+
T Consensus 97 ~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~--RPr 174 (503)
T KOG4716|consen 97 VDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGL--RPR 174 (503)
T ss_pred CccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecC--CCC
Confidence 111 1122345556666665555443223444 2334444321 1222332 2223 34789999999999 999
Q ss_pred CCCCCCCCCCceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhc
Q psy2398 148 YPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLG 227 (433)
Q Consensus 148 ~p~i~g~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p 227 (433)
+|+|||. ....+.|.+..+...-+|| -+|||+|+.|.|.|..|+..|.+|++..|+-- -| |..
T Consensus 175 Yp~IpG~-~Ey~ITSDDlFsl~~~PGk-TLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~---Lr---GFD--------- 237 (503)
T KOG4716|consen 175 YPDIPGA-KEYGITSDDLFSLPYEPGK-TLVVGAGYVALECAGFLKGFGYDVTVMVRSIL---LR---GFD--------- 237 (503)
T ss_pred CCCCCCc-eeeeecccccccccCCCCc-eEEEccceeeeehhhhHhhcCCCcEEEEEEee---cc---ccc---------
Confidence 9999991 1223556666555444454 67899999999999999999999999998731 11 111
Q ss_pred hhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCeE--Ee---c--
Q psy2398 228 NKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIV--HF---V-- 300 (433)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v--~~---~-- 300 (433)
+ ...+. +...+...|++ +. +-.+-..|+.++..+. .. .
T Consensus 238 ----q-----dmae~----v~~~m~~~Gik-----f~-----------------~~~vp~~Veq~~~g~l~v~~k~t~t~ 282 (503)
T KOG4716|consen 238 ----Q-----DMAEL----VAEHMEERGIK-----FL-----------------RKTVPERVEQIDDGKLRVFYKNTNTG 282 (503)
T ss_pred ----H-----HHHHH----HHHHHHHhCCc-----ee-----------------ecccceeeeeccCCcEEEEeeccccc
Confidence 1 11111 11111122221 00 0001112333332221 11 1
Q ss_pred CCceeeccEEEEccCCCCCCCCCCccc--ccc-cCCccccccccccCCCCcEEEEcccccc-CChhhHHHHHHHHHHHHH
Q psy2398 301 DDTHIEVDTIIYATGYNRHFPFIDKEK--LEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYI 376 (433)
Q Consensus 301 dG~~~~~D~vi~atG~~~~~~~l~~~~--~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~-~~~~~~a~~qa~~~a~~i 376 (433)
.+-+-++|.|+||.|+++...-|..+. +.. ....-.+.+....++.|.|||+||+.-. +-+.+.|.+.+|++|+.+
T Consensus 283 ~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rl 362 (503)
T KOG4716|consen 283 EEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRL 362 (503)
T ss_pred ccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhcCCCceEEecceecCCcccchhhhhhchHHHHHH
Confidence 122357999999999999877665443 333 1222233445668899999999998753 567789999999999888
Q ss_pred hhh
Q psy2398 377 QAF 379 (433)
Q Consensus 377 ~g~ 379 (433)
.+.
T Consensus 363 f~g 365 (503)
T KOG4716|consen 363 FAG 365 (503)
T ss_pred hcC
Confidence 554
No 81
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.88 E-value=7.1e-22 Score=190.35 Aligned_cols=290 Identities=17% Similarity=0.125 Sum_probs=196.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhc---CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG---NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP 83 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~---g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
..+++|||-|.+|..+...+++. -+++++|-..+... |...+++.. .+.-.
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n------------Y~Ri~Ls~v--------------l~~~~ 56 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN------------YNRILLSSV--------------LAGEK 56 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc------------ccceeeccc--------------cCCCc
Confidence 36899999999999999999983 45899998766541 222222110 01112
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSM 163 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~ 163 (433)
..+++.-.-.++++++++ +++.+.+|+.|++ +...|+++.|.++.||.+|+|||+ .|.+|++||.....++-..
T Consensus 57 ~~edi~l~~~dwy~~~~i--~L~~~~~v~~idr--~~k~V~t~~g~~~~YDkLilATGS--~pfi~PiPG~~~~~v~~~R 130 (793)
T COG1251 57 TAEDISLNRNDWYEENGI--TLYTGEKVIQIDR--ANKVVTTDAGRTVSYDKLIIATGS--YPFILPIPGSDLPGVFVYR 130 (793)
T ss_pred cHHHHhccchhhHHHcCc--EEEcCCeeEEecc--CcceEEccCCcEeecceeEEecCc--cccccCCCCCCCCCeeEEe
Confidence 234444445667788888 6888999999987 444788889999999999999998 8999999993222222222
Q ss_pred CCCCCC-----CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHH
Q psy2398 164 DYKSPD-----QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMA 238 (433)
Q Consensus 164 ~~~~~~-----~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~ 238 (433)
.+.+.. ....++-+|||+|.-|.|.|..|...|-+|++++-.+..+. . .
T Consensus 131 ~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMe-----------------r---------Q 184 (793)
T COG1251 131 TIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLME-----------------R---------Q 184 (793)
T ss_pred cHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHH-----------------H---------h
Confidence 222111 11234578999999999999999999999999885442110 0 1
Q ss_pred HHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeee----CCeEEecCCceeeccEEEEcc
Q psy2398 239 YIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN----GNIVHFVDDTHIEVDTIIYAT 314 (433)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~----~~~v~~~dG~~~~~D~vi~at 314 (433)
+++.--+.++..++..|+ ++.+....+++. ...+.|+||+.+++|.||+|+
T Consensus 185 LD~~ag~lL~~~le~~Gi-------------------------~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~ 239 (793)
T COG1251 185 LDRTAGRLLRRKLEDLGI-------------------------KVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAV 239 (793)
T ss_pred hhhHHHHHHHHHHHhhcc-------------------------eeecccchhhhhcCcceeeEeecCCCcccceeEEEec
Confidence 111111111222222222 233333222222 356889999999999999999
Q ss_pred CCCCCCCCCCcccccccCCccccccccccCCCCcEEEEcccccc----CChhhHHHHHHHHHHHHHhhhhc
Q psy2398 315 GYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA----AGLGDGLRLQGQFIRSYIQAFIR 381 (433)
Q Consensus 315 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~----~~~~~~a~~qa~~~a~~i~g~~~ 381 (433)
|.+|+..+....++..++ ++.+++ .+.|++|+||++|.|+.. .++..-+-.|++.+|.++.+...
T Consensus 240 GIrPn~ela~~aGlavnr-GIvvnd-~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~ 308 (793)
T COG1251 240 GIRPNDELAKEAGLAVNR-GIVVND-YMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEA 308 (793)
T ss_pred ccccccHhHHhcCcCcCC-Ceeecc-cccccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCcc
Confidence 999999888777777654 444554 458999999999999853 24445567899999999987744
No 82
>PRK09897 hypothetical protein; Provisional
Probab=99.77 E-value=6.1e-17 Score=158.41 Aligned_cols=196 Identities=13% Similarity=0.171 Sum_probs=121.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcC--CCeEEEccCCCCCCcccCCCC-CCc-cccce-EeecCCCcccCCCCCC------
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGN--INYDLYEMESDLGGVWNSQAS-CGR-VYPSL-HLISPKFNTQVPDYPM------ 75 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g--~~v~v~e~~~~~Gg~~~~~~~-~~~-~~~~~-~~~~~~~~~~~~~~~~------ 75 (433)
|++|+|||||++|+++|.+|.+.+ ++|+|||++..+|..+.+... .+. +.-.. ....+.....|..+..
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 358999999999999999998764 589999998888855444321 000 00000 0000000011111100
Q ss_pred ---------CCCCCCCCCHHHHHHHHHHHHHHc-------CCCcceEeCcEEEEEEEeCCeEEEEEcc-CcEEEeCEEEE
Q psy2398 76 ---------PDNYPVYPNHSMMLDYLRSYAKKF-------DVYNHSIFNTEVINLEQYEDIWEVELSN-GKKKKYDFIAV 138 (433)
Q Consensus 76 ---------~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~i~~~~~V~~v~~~~~~~~v~~~~-g~~~~~d~vIv 138 (433)
......|+++..+.+|+++..+.+ +....++.+++|+.++.+++.|.|++.+ +..+.+|.||+
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVL 160 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVI 160 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEE
Confidence 001125778888888877755433 2222456688999999888889999865 46789999999
Q ss_pred ccCCCCCCCCCCCCCCCCCceeccCCCCC--CCCCCCCeEEEEcCCCCHHHHHHHHhccC--------------------
Q psy2398 139 CNGAQRVARYPNYSGYFSGEILHSMDYKS--PDQIRNKRVLVVGAGNSGCDIAVDASHHS-------------------- 196 (433)
Q Consensus 139 AtG~~s~p~~p~i~g~~~g~~~~~~~~~~--~~~~~~~~v~VvG~G~sg~d~a~~l~~~~-------------------- 196 (433)
|||+. .|..+. +. . .++ ...+.. .....+.+|+|+|.|.|++|++..|...+
T Consensus 161 AtGh~-~p~~~~--~~-~-~yi-~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~~~~~~~~~l~y~~sg~ 234 (534)
T PRK09897 161 ATGHV-WPDEEE--AT-R-TYF-PSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASE 234 (534)
T ss_pred CCCCC-CCCCCh--hh-c-ccc-CCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCceeccCCCcceeeecCCCC
Confidence 99973 222221 10 0 011 111110 11234689999999999999999987542
Q ss_pred -CcEEEEEecCce
Q psy2398 197 -EKVYHSTRRGYH 208 (433)
Q Consensus 197 -~~V~~~~r~~~~ 208 (433)
.++++++|++..
T Consensus 235 ~~~I~a~SRrGl~ 247 (534)
T PRK09897 235 KLNITLMSRTGIL 247 (534)
T ss_pred CceEEEEeCCCCC
Confidence 379999999853
No 83
>KOG0399|consensus
Probab=99.76 E-value=5.2e-18 Score=168.20 Aligned_cols=310 Identities=18% Similarity=0.218 Sum_probs=170.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
.++|+|||+||+||+||-.|.+.|+-|+|+||.+.+||...|..| .+.+ ..
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygip------nmkl-----------------------dk 1835 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIP------NMKL-----------------------DK 1835 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCC------ccch-----------------------hH
Confidence 479999999999999999999999999999999999999988733 1110 11
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC-CCCC-----cee
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSG-----EIL 160 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g-~~~g-----~~~ 160 (433)
.+.+.--++...-|+ ++..|+++- + .+.. ++-.-..|.||+|+|+. .|+-.++|| ...| ..+
T Consensus 1836 ~vv~rrv~ll~~egi--~f~tn~eig------k--~vs~-d~l~~~~daiv~a~gst-~prdlpv~grd~kgv~fame~l 1903 (2142)
T KOG0399|consen 1836 FVVQRRVDLLEQEGI--RFVTNTEIG------K--HVSL-DELKKENDAIVLATGST-TPRDLPVPGRDLKGVHFAMEFL 1903 (2142)
T ss_pred HHHHHHHHHHHhhCc--eEEeecccc------c--cccH-HHHhhccCeEEEEeCCC-CCcCCCCCCccccccHHHHHHH
Confidence 123333334444465 244444431 1 1222 22235789999999995 677778888 3333 233
Q ss_pred ccCCC--------CCCCCCCCCeEEEEcCCCCHHHHHHHHhccCC-cEEEEEecCceeecccC----CCCChhHHhHhhc
Q psy2398 161 HSMDY--------KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRGYHYYPKFI----DGKPTPQWMLQLG 227 (433)
Q Consensus 161 ~~~~~--------~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~-~V~~~~r~~~~~~p~~~----~~~~~~~~~~~~p 227 (433)
|...- ......+||.|+|||||.+|-|....-.+.|. .|--+. ++|... .+.|+++ +|
T Consensus 1904 ~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~e-----llp~pp~~ra~~npwpq----wp 1974 (2142)
T KOG0399|consen 1904 EKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFE-----LLPQPPPERAPDNPWPQ----WP 1974 (2142)
T ss_pred HHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceeccee-----ecCCCCcccCCCCCCcc----Cc
Confidence 33211 11124579999999999999999888777754 343332 444332 2223222 12
Q ss_pred hhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceee----eCCe-EEe---
Q psy2398 228 NKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNL----NGNI-VHF--- 299 (433)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~----~~~~-v~~--- 299 (433)
.-++-. .--....+.+-.++..+.+.... +.. -.+|+++-.. +.++ +.++ -.+
T Consensus 1975 rvfrvd----ygh~e~~~~~g~dpr~y~vltk~-------------f~~-~~~g~v~gl~-~vrvew~k~~~g~w~~~ei 2035 (2142)
T KOG0399|consen 1975 RVFRVD----YGHAEAKEHYGSDPRTYSVLTKR-------------FIG-DDNGNVTGLE-TVRVEWEKDDKGRWQMKEI 2035 (2142)
T ss_pred eEEEee----cchHHHHHHhCCCcceeeeeeee-------------eec-cCCCceeeEE-EEEEEEEecCCCceEEEEc
Confidence 222210 00111111233333333221100 000 0112222100 1111 1111 111
Q ss_pred c-CCceeeccEEEEccCCCCCCCCC-Ccccccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHH
Q psy2398 300 V-DDTHIEVDTIIYATGYNRHFPFI-DKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYI 376 (433)
Q Consensus 300 ~-dG~~~~~D~vi~atG~~~~~~~l-~~~~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i 376 (433)
. +-+.+++|+||+|.||...-+.+ +...++. .+..+..-...+.++.+.+|++|||+...+++..+...+|.+|+.+
T Consensus 2036 ~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslvvwai~egrq~a~~v 2115 (2142)
T KOG0399|consen 2036 NNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQV 2115 (2142)
T ss_pred CCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecccccCCceEEEEEehhhhHHHHHH
Confidence 1 22358999999999998654433 3223333 2222322233468899999999999987665555555555555544
Q ss_pred ----hhhhcCCCc
Q psy2398 377 ----QAFIRKSKG 385 (433)
Q Consensus 377 ----~g~~~lp~~ 385 (433)
.|.--+|..
T Consensus 2116 d~~~~~~t~l~~~ 2128 (2142)
T KOG0399|consen 2116 DELMGGTTDLPGD 2128 (2142)
T ss_pred HHHhCCcccCCCC
Confidence 444456654
No 84
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.76 E-value=1.2e-16 Score=151.77 Aligned_cols=162 Identities=20% Similarity=0.301 Sum_probs=98.7
Q ss_pred CCCcEEEECCChHHHHHHHHHH-hcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELS-EGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~-~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..++|+||||||+|+.||.+|+ +.|++|+|||+.+.+||.+.+..+ +..+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVa----------------------------Pdh~~ 89 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVA----------------------------PDHIH 89 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCC----------------------------CCCcc
Confidence 4578999999999999999875 569999999999999999887621 11222
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC------------C--
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP------------N-- 150 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p------------~-- 150 (433)
-..+...+...+...++ ++..+.+| .. .++.++ -...||.||+|+|+. ...+| .
T Consensus 90 ~k~v~~~f~~~~~~~~v--~f~gnv~V---G~-----Dvt~ee-L~~~YDAVIlAtGA~-~l~ipi~~~~~~~~~~GGe~ 157 (506)
T PTZ00188 90 VKNTYKTFDPVFLSPNY--RFFGNVHV---GV-----DLKMEE-LRNHYNCVIFCCGAS-EVSIPIGQQDEDKAVSGGET 157 (506)
T ss_pred HHHHHHHHHHHHhhCCe--EEEeeeEe---cC-----ccCHHH-HHhcCCEEEEEcCCC-CCCCCcccccceeeeccccc
Confidence 34444444444443333 12222221 00 122221 124799999999984 22333 1
Q ss_pred ----CCCCCCCcee--ccCCCCC----CCC------C-CCCeEEEEcCCCCHHHHHHHHhc-------------------
Q psy2398 151 ----YSGYFSGEIL--HSMDYKS----PDQ------I-RNKRVLVVGAGNSGCDIAVDASH------------------- 194 (433)
Q Consensus 151 ----i~g~~~g~~~--~~~~~~~----~~~------~-~~~~v~VvG~G~sg~d~a~~l~~------------------- 194 (433)
++|.|...-+ +.....+ ... + ..++++|||.|+.|+|+|..|++
T Consensus 158 ~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~ 237 (506)
T PTZ00188 158 NPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIK 237 (506)
T ss_pred cccccCcEEehheEEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHH
Confidence 3342222211 1111110 011 1 45789999999999999997532
Q ss_pred --cCCcEEEEEecCc
Q psy2398 195 --HSEKVYHSTRRGY 207 (433)
Q Consensus 195 --~~~~V~~~~r~~~ 207 (433)
..++|+++.|++.
T Consensus 238 ~s~v~~V~ivgRRGp 252 (506)
T PTZ00188 238 RHNIKHIYIVGRRGF 252 (506)
T ss_pred hCCCcEEEEEEecCH
Confidence 2568999999984
No 85
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.75 E-value=3.9e-17 Score=158.96 Aligned_cols=283 Identities=18% Similarity=0.199 Sum_probs=172.3
Q ss_pred EEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCC-CCCHH
Q psy2398 10 LCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPV-YPNHS 86 (433)
Q Consensus 10 v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 86 (433)
++|||+|++|+++|..|.+. +.+++++.........-.. .+..... .....
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~ 54 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCP--------------------------LSLYVGGGIASLE 54 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCc--------------------------cchHHhcccCCHH
Confidence 58999999999999998885 4588877776543111000 0000000 00111
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYK 166 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~~~ 166 (433)
++..... +..+.++ .++.+++|+.++.... .+.+.++ .+.||++++|||. .|..++ +.+...........
T Consensus 55 ~~~~~~~-~~~~~~i--~~~~~~~v~~id~~~~--~v~~~~g-~~~yd~LvlatGa--~~~~~~--~~~~~~~~~~~~~~ 124 (415)
T COG0446 55 DLRYPPR-FNRATGI--DVRTGTEVTSIDPENK--VVLLDDG-EIEYDYLVLATGA--RPRPPP--ISDWEGVVTLRLRE 124 (415)
T ss_pred Hhcccch-hHHhhCC--EEeeCCEEEEecCCCC--EEEECCC-cccccEEEEcCCC--cccCCC--ccccCceEEECCHH
Confidence 1111111 1134445 5778889999987444 5666666 7899999999999 667665 21111111111111
Q ss_pred CCCCC-----CCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHH
Q psy2398 167 SPDQI-----RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIK 241 (433)
Q Consensus 167 ~~~~~-----~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 241 (433)
....+ ..++++|+|+|..|+++|..+.+.|.+|+++...+... ++... . .+.+
T Consensus 125 ~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~-~~~~~----------------~-----~~~~ 182 (415)
T COG0446 125 DAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLG-GQLLD----------------P-----EVAE 182 (415)
T ss_pred HHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccc-hhhhh----------------H-----HHHH
Confidence 11111 14789999999999999999999999999999876421 11000 0 1111
Q ss_pred HHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCeeecCCceeeeCCe-------EEecCCceeeccEEEEcc
Q psy2398 242 QVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNI-------VHFVDDTHIEVDTIIYAT 314 (433)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~-------v~~~dG~~~~~D~vi~at 314 (433)
.+.+.+ ...++ ++.....+.+++... +...++..+++|.+++++
T Consensus 183 ~~~~~l----~~~gi-------------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 233 (415)
T COG0446 183 ELAELL----EKYGV-------------------------ELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGP 233 (415)
T ss_pred HHHHHH----HHCCc-------------------------EEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEee
Confidence 111111 11111 233344555555321 577888899999999999
Q ss_pred CCCCCCCCCCccc--ccccCCccccccccccCCCCcEEEEcccccc----------CChhhHHHHHHHHHHHHHhhh
Q psy2398 315 GYNRHFPFIDKEK--LEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQAF 379 (433)
Q Consensus 315 G~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~p~i~~iG~~~~~----------~~~~~~a~~qa~~~a~~i~g~ 379 (433)
|.+|+..+.+... .....+++.++........+++|++||+... ...++.+..|++.++.++.+.
T Consensus 234 g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~ 310 (415)
T COG0446 234 GERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA 310 (415)
T ss_pred cccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhccc
Confidence 9999966665443 2334456777665533348999999998742 234567889999999999875
No 86
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.74 E-value=1.1e-15 Score=142.57 Aligned_cols=199 Identities=22% Similarity=0.308 Sum_probs=133.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcC---CCeEEEccCCCCCCcccCCCCCCccccceEeecCCC-cccC-CCCC-------
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGN---INYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKF-NTQV-PDYP------- 74 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g---~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~------- 74 (433)
+++|+|||+|++|+.+|.+|.+.- ..+.|||+...+|+...|.+. -+...+|.+.. +..+ ++.|
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~----~p~~~lNv~a~~mS~~~pD~p~~F~~WL 76 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTE----EPEHLLNVPAARMSAFAPDIPQDFVRWL 76 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCC----CchhhhccccccccccCCCCchHHHHHH
Confidence 479999999999999999999861 239999999999988777643 22333444332 2222 2211
Q ss_pred ------------CCCCCCCCCCHHHHHHHHHHHHHHcCCC---c-ceEeCcEEEEEEEe--CCeEEEEEccCcEEEeCEE
Q psy2398 75 ------------MPDNYPVYPNHSMMLDYLRSYAKKFDVY---N-HSIFNTEVINLEQY--EDIWEVELSNGKKKKYDFI 136 (433)
Q Consensus 75 ------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~-~i~~~~~V~~v~~~--~~~~~v~~~~g~~~~~d~v 136 (433)
...+.+.|+++..+.+|+.+..+.+-.. . -.+..++++.+.++ ...|.++..+|....||.+
T Consensus 77 ~~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~ 156 (474)
T COG4529 77 QKQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADII 156 (474)
T ss_pred HhcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEE
Confidence 1234457889999999998887655111 1 12336677777776 6789999999999999999
Q ss_pred EEccCCCCCCCCCCCCC-CCCCc-eeccCCCCCCC--C-CCCCeEEEEcCCCCHHHHHHHHhccC--CcEEEEEecCcee
Q psy2398 137 AVCNGAQRVARYPNYSG-YFSGE-ILHSMDYKSPD--Q-IRNKRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRGYHY 209 (433)
Q Consensus 137 IvAtG~~s~p~~p~i~g-~~~g~-~~~~~~~~~~~--~-~~~~~v~VvG~G~sg~d~a~~l~~~~--~~V~~~~r~~~~~ 209 (433)
|+|||+ .+..++... .+.+. .+.+..+.... . -.+.+|+|+|+|.+-+|....+.+.| .+||+++|++ .
T Consensus 157 Vlatgh--~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG--l 232 (474)
T COG4529 157 VLATGH--SAPPADPAARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG--L 232 (474)
T ss_pred EEeccC--CCCCcchhhhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc--c
Confidence 999998 333332222 23321 12222222111 1 13456999999999999999999974 5799999998 4
Q ss_pred eccc
Q psy2398 210 YPKF 213 (433)
Q Consensus 210 ~p~~ 213 (433)
.|+.
T Consensus 233 ~~~~ 236 (474)
T COG4529 233 VPRP 236 (474)
T ss_pred ccCC
Confidence 4443
No 87
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.74 E-value=2.1e-17 Score=158.22 Aligned_cols=294 Identities=19% Similarity=0.159 Sum_probs=174.1
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHHH
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSM 87 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (433)
++|+||||||+||++|..|.+.|++|+++|+.+..||...+..| .|.-..+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP-----------------------------~~kl~k~ 174 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIP-----------------------------DFKLPKD 174 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCc-----------------------------hhhccch
Confidence 79999999999999999999999999999999999999888733 2333455
Q ss_pred HHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCceeccCCCC-
Q psy2398 88 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYK- 166 (433)
Q Consensus 88 ~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~~~~~~~- 166 (433)
+.+...++.++.|+ .++.++++=. .++.++ ..-.+|.|++|||.. .|+..+++|.-...+..+.++.
T Consensus 175 i~d~~i~~l~~~Gv--~~~~~~~vG~--------~it~~~-L~~e~Dav~l~~G~~-~~~~l~i~g~d~~gv~~A~dfL~ 242 (457)
T COG0493 175 ILDRRLELLERSGV--EFKLNVRVGR--------DITLEE-LLKEYDAVFLATGAG-KPRPLDIPGEDAKGVAFALDFLT 242 (457)
T ss_pred HHHHHHHHHHHcCe--EEEEcceECC--------cCCHHH-HHHhhCEEEEecccc-CCCCCCCCCcCCCcchHHHHHHH
Confidence 66666777777775 5777766521 122221 124569999999985 7777788882122222221111
Q ss_pred -------------CCCCCCCCeEEEEcCCCCHHHHHHHHhccCC-cEEEEEecCceeecccCCCCChhHHhHhhchhhcC
Q psy2398 167 -------------SPDQIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS 232 (433)
Q Consensus 167 -------------~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~ 232 (433)
......+|+|+|||+|.+++|++....+.|. +|+.+.+...- ....+ .|.+-..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~-----~~~~~-------~~~~~~~ 310 (457)
T COG0493 243 RLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRD-----DETNE-------WPTWAAQ 310 (457)
T ss_pred HHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEecccccc-----ccCCc-------ccccchh
Confidence 1112346999999999999999988888864 78887633210 00000 0010000
Q ss_pred chHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcc--cCCCeeec--CCceee---eC----CeEEecC
Q psy2398 233 KEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI--GHGDILPK--DDIKNL---NG----NIVHFVD 301 (433)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~--~~v~~~---~~----~~v~~~d 301 (433)
...+... -.+....+ ...-...+ ..|+|.-. ..+... .+ .-+-+ .
T Consensus 311 -----~~~~~a~--eeg~~~~~----------------~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v-~ 366 (457)
T COG0493 311 -----LEVRSAG--EEGVERLP----------------FVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGV-I 366 (457)
T ss_pred -----hhhhhhh--hcCCcccc----------------cCCceeEeecCCCcEeeeecccccccCcccccccccCccc-c
Confidence 0000000 00000000 00001111 12333311 111010 00 01111 2
Q ss_pred Cc--eeeccEEEEccCCCCCCCCCC-cc-cccc-cCCccccccccccCCCCcEEEEccccccCChhhHHHHHHHHHHHHH
Q psy2398 302 DT--HIEVDTIIYATGYNRHFPFID-KE-KLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYI 376 (433)
Q Consensus 302 G~--~~~~D~vi~atG~~~~~~~l~-~~-~~~~-~~~~~~~~~~~~~~~~p~i~~iG~~~~~~~~~~~a~~qa~~~a~~i 376 (433)
|+ .+++|.|+.|+|+.++..... .. .+.. ..+.+.+......++.|++|+.||+.........|..++|-+|+.|
T Consensus 367 gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~eGr~aak~i 446 (457)
T COG0493 367 GTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREAAKAI 446 (457)
T ss_pred CceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccchhhhhhHHhhchHHHHhh
Confidence 33 478999999999999865432 11 2222 3345555554448889999999999986666777888899888887
Q ss_pred hh
Q psy2398 377 QA 378 (433)
Q Consensus 377 ~g 378 (433)
..
T Consensus 447 ~~ 448 (457)
T COG0493 447 DK 448 (457)
T ss_pred hH
Confidence 63
No 88
>KOG1800|consensus
Probab=99.73 E-value=5.7e-16 Score=138.43 Aligned_cols=157 Identities=23% Similarity=0.336 Sum_probs=102.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
.++|+|||+||||+.+|..|+++ ++.|+++|+.+..+|.-++. -.|.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG-------------------------------VAPD 68 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG-------------------------------VAPD 68 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec-------------------------------cCCC
Confidence 45999999999999999999984 68999999999988877765 1222
Q ss_pred HHHHH---HHHHHHHHHcCCCcceEeCcEE-EEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCcee
Q psy2398 85 HSMML---DYLRSYAKKFDVYNHSIFNTEV-INLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEIL 160 (433)
Q Consensus 85 ~~~~~---~~l~~~~~~~~~~~~i~~~~~V-~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~ 160 (433)
+++.. .-+...+++..+ .+..|.+| .. +++.+ -+-.||.||+|.|+. .++..+|||+-...++
T Consensus 69 HpEvKnvintFt~~aE~~rf--sf~gNv~vG~d---------vsl~e-L~~~ydavvLaYGa~-~dR~L~IPGe~l~~V~ 135 (468)
T KOG1800|consen 69 HPEVKNVINTFTKTAEHERF--SFFGNVKVGRD---------VSLKE-LTDNYDAVVLAYGAD-GDRRLDIPGEELSGVI 135 (468)
T ss_pred CcchhhHHHHHHHHhhccce--EEEecceeccc---------ccHHH-HhhcccEEEEEecCC-CCcccCCCCcccccce
Confidence 33333 333444444332 12224333 11 22211 235799999999996 5667788883222222
Q ss_pred ccCCCC-------C----CCCCCCCeEEEEcCCCCHHHHHHHHhcc----------------------CCcEEEEEecCc
Q psy2398 161 HSMDYK-------S----PDQIRNKRVLVVGAGNSGCDIAVDASHH----------------------SEKVYHSTRRGY 207 (433)
Q Consensus 161 ~~~~~~-------~----~~~~~~~~v~VvG~G~sg~d~a~~l~~~----------------------~~~V~~~~r~~~ 207 (433)
.+..+. + .-++.+..|+|||.|+.|+|+|..|... .+.|+++.|++.
T Consensus 136 Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp 215 (468)
T KOG1800|consen 136 SAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGP 215 (468)
T ss_pred ehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCc
Confidence 222221 1 1245688999999999999999976542 356899999874
No 89
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.72 E-value=1.4e-16 Score=161.66 Aligned_cols=171 Identities=17% Similarity=0.188 Sum_probs=89.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCC--C-ccccceEeecCCCcccCCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASC--G-RVYPSLHLISPKFNTQVPDYPMPDNYPVY 82 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (433)
..++|+||||||+|++||.+|++.|++|++||+.+..|+......|- - ..++.+.-..+...-....+..+. .+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~---R~ 458 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITV---RW 458 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccc---cc
Confidence 45799999999999999999999999999999976655432210000 0 000000000000000111111111 11
Q ss_pred CCHHHHHHHHHHHHHHcCCCcceEe--CcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCcee
Q psy2398 83 PNHSMMLDYLRSYAKKFDVYNHSIF--NTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEIL 160 (433)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~i~~--~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~~ 160 (433)
.....+.++...+ .+. .+.+ +++ +.. .++.++-....||.|++|||++ .|+.++++|.-...+.
T Consensus 459 --~k~~l~~i~~il~-~g~--~v~~~~gv~---lG~-----dit~edl~~~gyDAV~IATGA~-kpr~L~IPGeda~GV~ 524 (1028)
T PRK06567 459 --DKNNLDILRLILE-RNN--NFKYYDGVA---LDF-----NITKEQAFDLGFDHIAFCIGAG-QPKVLDIENFEAKGVK 524 (1028)
T ss_pred --hHHHHHHHHHHHh-cCC--ceEEECCeE---ECc-----cCCHHHHhhcCCCEEEEeCCCC-CCCCCCCCCccCCCeE
Confidence 1112222222222 232 2444 433 111 1222221235799999999984 5788888882222232
Q ss_pred ccCCCCCC------------C-CCCCCeEEEEcCCCCHHHHHHHHh
Q psy2398 161 HSMDYKSP------------D-QIRNKRVLVVGAGNSGCDIAVDAS 193 (433)
Q Consensus 161 ~~~~~~~~------------~-~~~~~~v~VvG~G~sg~d~a~~l~ 193 (433)
.+.++... . ...+++|+|||||++|+|+|....
T Consensus 525 sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAl 570 (1028)
T PRK06567 525 TASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESL 570 (1028)
T ss_pred EHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHH
Confidence 22221100 1 113689999999999999999444
No 90
>KOG1346|consensus
Probab=99.64 E-value=3.3e-16 Score=141.23 Aligned_cols=301 Identities=15% Similarity=0.251 Sum_probs=175.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCC--------CcccCCCCCC-ccccceEeecCCCcccCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLG--------GVWNSQASCG-RVYPSLHLISPKFNTQVPDYPM 75 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~G--------g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 75 (433)
+...+|||+|.+..+++...... +.+|.+|...+.+- -.|.+..|+. .-+....++....-.-| .
T Consensus 178 hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiff----e 253 (659)
T KOG1346|consen 178 HVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFF----E 253 (659)
T ss_pred cCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEe----c
Confidence 45689999999988888877765 55788876555431 1233222210 00111111111000000 0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCC-CCC-
Q psy2398 76 PDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN-YSG- 153 (433)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~-i~g- 153 (433)
|+ ..|.+.+++-. +.+-|+ -+..+.+|.+|+..++ .|++++|.++.||.++||||. .|+-.+ +..
T Consensus 254 pd--~FfvspeDLp~-----~~nGGv--Avl~G~kvvkid~~d~--~V~LnDG~~I~YdkcLIATG~--~Pk~l~~~~~A 320 (659)
T KOG1346|consen 254 PD--GFFVSPEDLPK-----AVNGGV--AVLRGRKVVKIDEEDK--KVILNDGTTIGYDKCLIATGV--RPKKLQVFEEA 320 (659)
T ss_pred CC--cceeChhHCcc-----cccCce--EEEeccceEEeecccC--eEEecCCcEeehhheeeecCc--Ccccchhhhhc
Confidence 00 12344444322 122244 3566778888876554 577789999999999999999 776443 322
Q ss_pred --CCCCce--ec-cCCCCCCCC--CCCCeEEEEcCCCCHHHHHHHHhcc----CCcEEEEEecCceeecccCCCCChhHH
Q psy2398 154 --YFSGEI--LH-SMDYKSPDQ--IRNKRVLVVGAGNSGCDIAVDASHH----SEKVYHSTRRGYHYYPKFIDGKPTPQW 222 (433)
Q Consensus 154 --~~~g~~--~~-~~~~~~~~~--~~~~~v~VvG~G~sg~d~a~~l~~~----~~~V~~~~r~~~~~~p~~~~~~~~~~~ 222 (433)
+...++ +| ..+|+..+. ..-+.|.|||+|..|.|+|+.|.+. |.+|+.+...... +
T Consensus 321 ~~evk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n-------------m 387 (659)
T KOG1346|consen 321 SEEVKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN-------------M 387 (659)
T ss_pred CHHhhhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC-------------h
Confidence 111121 11 122222211 1246899999999999999999985 5677766544321 0
Q ss_pred hHhhchhhcCchHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCccChhhhhcccCCCee--ecCCceeee----CCe
Q psy2398 223 MLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLN----GNI 296 (433)
Q Consensus 223 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~v~~~~----~~~ 296 (433)
..-||..+.+ +-.+.+. .+.|. .+..|+++. .-.
T Consensus 388 ~kiLPeyls~-----wt~ekir-----------------------------------~~GV~V~pna~v~sv~~~~~nl~ 427 (659)
T KOG1346|consen 388 EKILPEYLSQ-----WTIEKIR-----------------------------------KGGVDVRPNAKVESVRKCCKNLV 427 (659)
T ss_pred hhhhHHHHHH-----HHHHHHH-----------------------------------hcCceeccchhhhhhhhhccceE
Confidence 1115666666 4444433 22333 333444442 234
Q ss_pred EEecCCceeeccEEEEccCCCCCCCCCCccccccc--CCccccccccccCCCCcEEEEccccccCC---------hhhHH
Q psy2398 297 VHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWK--LGIPDLFIHIAPRNLDNIFFFGFVNAAAG---------LGDGL 365 (433)
Q Consensus 297 v~~~dG~~~~~D~vi~atG~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~p~i~~iG~~~~~~~---------~~~~a 365 (433)
+.++||.++..|+|+.|+|-.||..+...++++.+ -|+.+++..+.. ..|||++||+++..- .+..+
T Consensus 428 lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~a--r~NvwvAGdaacF~D~~LGrRRVehhdha 505 (659)
T KOG1346|consen 428 LKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKA--RENVWVAGDAACFEDGVLGRRRVEHHDHA 505 (659)
T ss_pred EEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeec--ccceeeecchhhhhcccccceeccccccc
Confidence 56899999999999999999999999988877763 355666654432 589999999986421 12334
Q ss_pred HHHHHHHHHHHhhh
Q psy2398 366 RLQGQFIRSYIQAF 379 (433)
Q Consensus 366 ~~qa~~~a~~i~g~ 379 (433)
...+|++..++.|.
T Consensus 506 vvSGRLAGENMtgA 519 (659)
T KOG1346|consen 506 VVSGRLAGENMTGA 519 (659)
T ss_pred eeeceecccccccc
Confidence 45566666666554
No 91
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.54 E-value=6.5e-14 Score=127.61 Aligned_cols=138 Identities=20% Similarity=0.287 Sum_probs=100.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC--------CcccCCCCCCccccceEeecC---CCc----ccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG--------GVWNSQASCGRVYPSLHLISP---KFN----TQVP 71 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G--------g~~~~~~~~~~~~~~~~~~~~---~~~----~~~~ 71 (433)
.+||+||||||+||.||..+.++|.+|+|||+.+.+| |.|+..+.. .+..+..+.| +.+ ..|.
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~--~~~~~ls~~p~~~~fl~sal~~ft 80 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSE--APDEFLSRNPGNGHFLKSALARFT 80 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccc--cHHHHHHhCCCcchHHHHHHHhCC
Confidence 5899999999999999999999999999999998764 556554321 1222222222 110 0111
Q ss_pred C---------CCC----CCCCCCCC---CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCE
Q psy2398 72 D---------YPM----PDNYPVYP---NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDF 135 (433)
Q Consensus 72 ~---------~~~----~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~ 135 (433)
. ... ...-.-|| ....+.+.+...+++.++ .++.+++|.+++.++..+.+++.+++++.||.
T Consensus 81 ~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV--~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~ 158 (408)
T COG2081 81 PEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGV--TIRTRSRVSSVEKDDSGFRLDTSSGETVKCDS 158 (408)
T ss_pred HHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCc--EEEecceEEeEEecCceEEEEcCCCCEEEccE
Confidence 0 000 01111333 468889999999999999 69999999999998889999999998899999
Q ss_pred EEEccCCCCCCCC
Q psy2398 136 IAVCNGAQRVARY 148 (433)
Q Consensus 136 vIvAtG~~s~p~~ 148 (433)
+|+|||..|.|+.
T Consensus 159 lilAtGG~S~P~l 171 (408)
T COG2081 159 LILATGGKSWPKL 171 (408)
T ss_pred EEEecCCcCCCCC
Confidence 9999998877754
No 92
>KOG2755|consensus
Probab=99.53 E-value=1.2e-13 Score=117.59 Aligned_cols=151 Identities=21% Similarity=0.313 Sum_probs=94.3
Q ss_pred cEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 9 KLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
+.+|||||++|.+||..|+.+ ..+++++..++.+-. ...-.
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vks-------------------------------------vtn~~ 43 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKS-------------------------------------VTNYQ 43 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHH-------------------------------------HhhHH
Confidence 368999999999999999986 457888876653310 11123
Q ss_pred HHHHHHHHHHHHcCCCcc------eEeCcEEEEEE-EeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCCCCCCce
Q psy2398 87 MMLDYLRSYAKKFDVYNH------SIFNTEVINLE-QYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEI 159 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~------i~~~~~V~~v~-~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g~~~g~~ 159 (433)
.+.+|+.. |.+.++ -.|.+-+..+. .+.....+++++|..+.|++|++|||. .|+.-. .| -...+
T Consensus 44 ~i~~ylek----fdv~eq~~~elg~~f~~~~~~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~--kPklq~-E~-~n~~I 115 (334)
T KOG2755|consen 44 KIGQYLEK----FDVKEQNCHELGPDFRRFLNDVVTWDSSEHCIHTQNGEKLKYFKLCLCTGY--KPKLQV-EG-INPKI 115 (334)
T ss_pred HHHHHHHh----cCccccchhhhcccHHHHHHhhhhhccccceEEecCCceeeEEEEEEecCC--Ccceee-cC-CCceE
Confidence 34444433 222110 01111111111 124556788999999999999999998 776532 11 11223
Q ss_pred eccCCCCCCC-----CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 160 LHSMDYKSPD-----QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 160 ~~~~~~~~~~-----~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+-..+..+.+ -.+.|.|+|+|.|-+++|+++++... +|+|....+
T Consensus 116 v~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk~~--nv~w~ikd~ 165 (334)
T KOG2755|consen 116 VGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELKIL--NVTWKIKDE 165 (334)
T ss_pred EEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhhcc--eeEEEecch
Confidence 3333333332 24688999999999999999998764 688888765
No 93
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.51 E-value=1.1e-14 Score=126.90 Aligned_cols=117 Identities=23% Similarity=0.389 Sum_probs=72.3
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHHHH
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMM 88 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (433)
||+|||||++|++||..|++.+.+++++|+.+..+.. ... .+...... ........
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~-~~~-----~~~~~~~~------------------~~~~~~~~ 56 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYN-SGC-----IPSPLLVE------------------IAPHRHEF 56 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHH-HSH-----HHHHHHHH------------------HHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccc-ccc-----cccccccc------------------cccccccc
Confidence 7999999999999999999999999999886532110 000 00000000 00000111
Q ss_pred HH----HHHHHHHHcCCCcceEeCcEEEEEEEeCCe-----EEEE---EccCcEEEeCEEEEccCCCCCCCCCCCCC
Q psy2398 89 LD----YLRSYAKKFDVYNHSIFNTEVINLEQYEDI-----WEVE---LSNGKKKKYDFIAVCNGAQRVARYPNYSG 153 (433)
Q Consensus 89 ~~----~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~-----~~v~---~~~g~~~~~d~vIvAtG~~s~p~~p~i~g 153 (433)
.. .+.+.....++ .+++++++.+++...+. +.+. ..++.++.||+||+|||. .|+.|.++|
T Consensus 57 ~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~--~~~~~~i~g 129 (201)
T PF07992_consen 57 LPARLFKLVDQLKNRGV--EIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGS--RPRTPNIPG 129 (201)
T ss_dssp HHHHHGHHHHHHHHHTH--EEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTE--EEEEESSTT
T ss_pred ccccccccccccccceE--EEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCcc--ccceeecCC
Confidence 10 12222234455 46678999999887553 2332 233457999999999997 788888887
No 94
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.48 E-value=3.5e-13 Score=128.31 Aligned_cols=138 Identities=24% Similarity=0.317 Sum_probs=80.1
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC--------CcccCCCCCCccccceEee---cCCCcc----cCC-
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG--------GVWNSQASCGRVYPSLHLI---SPKFNT----QVP- 71 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G--------g~~~~~~~~~~~~~~~~~~---~~~~~~----~~~- 71 (433)
|||+|||||||||.||..+++.|.+|+|+|+.+.+| |.|+..+.. ......... .+..+. .|+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~-~~~~~~~~~~~~~~~f~~~~l~~f~~ 79 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLN-IDPSEFLSGYGRNPKFLKSALKRFSP 79 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETT-SSGGGEECS-TBTTTCTHHHHHHS-H
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccc-cchhhHhhhcccchHHHHHHHhcCCH
Confidence 699999999999999999999999999999999875 555543210 001111111 011110 010
Q ss_pred --------CCCC----CCCCCCCC---CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCe-EEEEEccCcEEEeCE
Q psy2398 72 --------DYPM----PDNYPVYP---NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDF 135 (433)
Q Consensus 72 --------~~~~----~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~-~~v~~~~g~~~~~d~ 135 (433)
.... .++...|| ...++.+.+...+++.++ .++++++|..|+.++++ |.|.++++..+.+|.
T Consensus 80 ~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv--~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~ 157 (409)
T PF03486_consen 80 EDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGV--EIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADA 157 (409)
T ss_dssp HHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT---EEE-S--EEEEEEETTEEEEEEETTTEEEEESE
T ss_pred HHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCC--EEEeCCEeeeeeecCCceeEeeccCcccccCCE
Confidence 0000 00111122 467788888888888888 69999999999988666 999997777899999
Q ss_pred EEEccCCCCCCCC
Q psy2398 136 IAVCNGAQRVARY 148 (433)
Q Consensus 136 vIvAtG~~s~p~~ 148 (433)
||+|||+.|.|..
T Consensus 158 vILAtGG~S~p~~ 170 (409)
T PF03486_consen 158 VILATGGKSYPKT 170 (409)
T ss_dssp EEE----SSSGGG
T ss_pred EEEecCCCCcccc
Confidence 9999999776653
No 95
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.47 E-value=1.2e-12 Score=108.52 Aligned_cols=127 Identities=22% Similarity=0.402 Sum_probs=90.9
Q ss_pred EEECCChHHHHHHHHHHhc-----CCCeEEEccCCCC-CCcccCCCCCCccccceEeecCCCcccC-CCCC---------
Q psy2398 11 CIIGGGPLGIGLGRELSEG-----NINYDLYEMESDL-GGVWNSQASCGRVYPSLHLISPKFNTQV-PDYP--------- 74 (433)
Q Consensus 11 ~IIGaG~~Gl~~a~~l~~~-----g~~v~v~e~~~~~-Gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------- 74 (433)
+|||+|++|++++.+|.++ ..+|+|||+.+.. |+.|.... .+...+|++...+.. ++.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~-----~~~~llN~~a~~~s~~~~~~~~~f~~Wl~ 75 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQ-----PPSHLLNTPADQMSLFPDDPGDDFVDWLR 75 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCC-----ChHHhhcccccccccccccCCCCHHHHHH
Confidence 6999999999999999987 4599999996653 35666541 234445555443332 2222
Q ss_pred -------CCCCCCCCCCHHHHHHHHHHHHHHcC--CCc--c-eEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCC
Q psy2398 75 -------MPDNYPVYPNHSMMLDYLRSYAKKFD--VYN--H-SIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 142 (433)
Q Consensus 75 -------~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~--~-i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~ 142 (433)
.......|+++..+.+|+++..+.+- +.. . .+...+|+.|+..+++|.|.+.+|..+.||.||+|||+
T Consensus 76 ~~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 76 ANGADEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred hcCcccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 01122368999999999998877641 111 1 23367899999988889999999999999999999996
No 96
>PRK06847 hypothetical protein; Provisional
Probab=99.42 E-value=5.7e-12 Score=120.94 Aligned_cols=140 Identities=22% Similarity=0.299 Sum_probs=93.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC---cccCCCC----------------CCccccceEeecCC-
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG---VWNSQAS----------------CGRVYPSLHLISPK- 65 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg---~~~~~~~----------------~~~~~~~~~~~~~~- 65 (433)
+++||+|||||++|+++|..|++.|++|+|+|+.+.... ....... .+............
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g 82 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG 82 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence 578999999999999999999999999999999875321 0000000 00001111111111
Q ss_pred -CcccCCCCCC-CCCC--CCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccC
Q psy2398 66 -FNTQVPDYPM-PDNY--PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNG 141 (433)
Q Consensus 66 -~~~~~~~~~~-~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG 141 (433)
.+..++.... ...+ .....+.++.+++.+.+...++ +++++++|+.++.+++.+.+++.+|+++.+|.||+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG 160 (375)
T PRK06847 83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGA--DVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADG 160 (375)
T ss_pred CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCC--EEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcC
Confidence 1111110000 0011 1234678889999998888777 58999999999987788899988888899999999999
Q ss_pred CCCCCC
Q psy2398 142 AQRVAR 147 (433)
Q Consensus 142 ~~s~p~ 147 (433)
.+|..+
T Consensus 161 ~~s~~r 166 (375)
T PRK06847 161 LYSKVR 166 (375)
T ss_pred CCcchh
Confidence 977543
No 97
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.37 E-value=1.7e-11 Score=119.11 Aligned_cols=138 Identities=16% Similarity=0.103 Sum_probs=89.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc-----CCCCCCccccc---------------eEeecC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN-----SQASCGRVYPS---------------LHLISP 64 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~-----~~~~~~~~~~~---------------~~~~~~ 64 (433)
+.++||+||||||+|++||..|++.|++|+|+||.+..|.... +.......++. ..+...
T Consensus 3 ~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (428)
T PRK10157 3 EDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTE 82 (428)
T ss_pred cccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcC
Confidence 4569999999999999999999999999999999876543211 00000000110 001111
Q ss_pred CCcc--cCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEcc
Q psy2398 65 KFNT--QVPDYPM--PDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCN 140 (433)
Q Consensus 65 ~~~~--~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAt 140 (433)
.... .+..... +........+.++.+++.+.+++.|+ .++.+++|+.+..+++.+.....++.++.+|.||+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv--~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~ 160 (428)
T PRK10157 83 KSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGA--QLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILAD 160 (428)
T ss_pred CCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCC--EEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEe
Confidence 1111 1111000 01111224578889999999988887 5888999999987666665444566679999999999
Q ss_pred CCCC
Q psy2398 141 GAQR 144 (433)
Q Consensus 141 G~~s 144 (433)
|.++
T Consensus 161 G~~s 164 (428)
T PRK10157 161 GVNS 164 (428)
T ss_pred CCCH
Confidence 9854
No 98
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.33 E-value=1.4e-11 Score=114.13 Aligned_cols=133 Identities=17% Similarity=0.199 Sum_probs=88.2
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCc--------------cccceEeecCCCcccCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGR--------------VYPSLHLISPKFNTQVPDY 73 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~ 73 (433)
+||+|||||++|+++|..|++.|++|+|+|+....+..+....-... ............-. . ..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~ 78 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDS-V-EI 78 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcE-E-Ee
Confidence 59999999999999999999999999999998876542221100000 00000000000000 0 01
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc-CcEEEeCEEEEccCCCC
Q psy2398 74 PMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN-GKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~-g~~~~~d~vIvAtG~~s 144 (433)
+.+.......++..+.+.+.+.+.+.++ +++++++|+.+..+++.+.+.+.+ +.++++|+||+|+|.++
T Consensus 79 ~~~~~~~~~i~r~~l~~~l~~~~~~~gv--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 79 PIETELAYVIDRDAFDEQLAERAQEAGA--ELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred ccCCCcEEEEEHHHHHHHHHHHHHHcCC--EEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 1111111235678899999999988887 588999999998877777776554 35799999999999965
No 99
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.33 E-value=2.1e-11 Score=117.61 Aligned_cols=139 Identities=15% Similarity=0.258 Sum_probs=89.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC------------------cccCCCCCCccccceEeecCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG------------------VWNSQASCGRVYPSLHLISPKF 66 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg------------------~~~~~~~~~~~~~~~~~~~~~~ 66 (433)
...+||+|||||++|+++|..|++.|++|+|||+.+..+. .|..-......+..........
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g 84 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATG 84 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCC
Confidence 4568999999999999999999999999999999865321 1110000011112222211111
Q ss_pred -c-----ccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEc
Q psy2398 67 -N-----TQVPDYPMPD-NYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVC 139 (433)
Q Consensus 67 -~-----~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvA 139 (433)
. ..|....... .......+..+.+.+.+.+.+++.. .+++++|+.++.+++.|.|+++++.++.+|.||.|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~--~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~A 162 (388)
T PRK07494 85 RLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNI--TRFGDEAESVRPREDEVTVTLADGTTLSARLVVGA 162 (388)
T ss_pred CCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCc--EEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEe
Confidence 0 0011000000 0111245677888888777776432 47799999998888889999988888999999999
Q ss_pred cCCCCC
Q psy2398 140 NGAQRV 145 (433)
Q Consensus 140 tG~~s~ 145 (433)
+|.+|.
T Consensus 163 dG~~S~ 168 (388)
T PRK07494 163 DGRNSP 168 (388)
T ss_pred cCCCch
Confidence 999763
No 100
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.31 E-value=3.3e-11 Score=116.26 Aligned_cols=142 Identities=17% Similarity=0.243 Sum_probs=92.4
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC----C--------------------cccCCCC-CCcc
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG----G--------------------VWNSQAS-CGRV 55 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G----g--------------------~~~~~~~-~~~~ 55 (433)
|++ ..++||+||||||+|+++|..|++.|++|+|+|+.+... + .|..-.. ....
T Consensus 1 ~~~-~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~ 79 (392)
T PRK08773 1 MSR-RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQP 79 (392)
T ss_pred CCC-CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCc
Confidence 553 456899999999999999999999999999999976431 1 0000000 0011
Q ss_pred ccceEeecC--CCcccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEE
Q psy2398 56 YPSLHLISP--KFNTQVPDYPMPD-NYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKK 132 (433)
Q Consensus 56 ~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~ 132 (433)
+..+..... .....++...... .......+..+.+.+.+.+++.++ .++++++|+.++.+++.+.+++.++.++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv--~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ 157 (392)
T PRK08773 80 YRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGV--QLHCPARVVALEQDADRVRLRLDDGRRLE 157 (392)
T ss_pred ccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCC--EEEcCCeEEEEEecCCeEEEEECCCCEEE
Confidence 111111110 0011111110000 011123467788888888887777 58899999999988888899988888899
Q ss_pred eCEEEEccCCCCC
Q psy2398 133 YDFIAVCNGAQRV 145 (433)
Q Consensus 133 ~d~vIvAtG~~s~ 145 (433)
+|.||.|+|.+|.
T Consensus 158 a~~vV~AdG~~S~ 170 (392)
T PRK08773 158 AALAIAADGAAST 170 (392)
T ss_pred eCEEEEecCCCch
Confidence 9999999999763
No 101
>PRK07190 hypothetical protein; Provisional
Probab=99.31 E-value=3.3e-11 Score=118.59 Aligned_cols=139 Identities=17% Similarity=0.171 Sum_probs=90.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC--CCC-----------------CCccccceE-eecC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS--QAS-----------------CGRVYPSLH-LISP 64 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~--~~~-----------------~~~~~~~~~-~~~~ 64 (433)
+..+||+||||||+|+++|..|++.|++|+|+|+.+.....-.- -.+ .+....... +...
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g 82 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANG 82 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCC
Confidence 45689999999999999999999999999999998764211000 000 000000000 0000
Q ss_pred CCccc----CCCCC-CCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEc
Q psy2398 65 KFNTQ----VPDYP-MPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVC 139 (433)
Q Consensus 65 ~~~~~----~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvA 139 (433)
..+.. +.... .........++..+.+.+.+.+...++ .++++++|+.++.+++++.+++.+++++.+++||.|
T Consensus 83 ~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv--~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgA 160 (487)
T PRK07190 83 KFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGA--AVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGA 160 (487)
T ss_pred ceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEEC
Confidence 01000 00000 000011123466778888888888887 699999999999887788888888878999999999
Q ss_pred cCCCCC
Q psy2398 140 NGAQRV 145 (433)
Q Consensus 140 tG~~s~ 145 (433)
+|.+|.
T Consensus 161 DG~~S~ 166 (487)
T PRK07190 161 DGSRSF 166 (487)
T ss_pred CCCCHH
Confidence 999773
No 102
>KOG3851|consensus
Probab=99.31 E-value=4.4e-11 Score=105.00 Aligned_cols=114 Identities=18% Similarity=0.313 Sum_probs=68.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhc-CC-CeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEG-NI-NYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVY 82 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~-g~-~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (433)
+.+++|+|+|||.+|+++|..+.+. +. +|.|+|..... -|+..+......++.++.-..+.. .-.
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~H------------yYQPgfTLvGgGl~~l~~srr~~a-~li 103 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDH------------YYQPGFTLVGGGLKSLDSSRRKQA-SLI 103 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhc------------ccCcceEEeccchhhhhhccCccc-ccc
Confidence 3568999999999999999999875 44 89999987642 133333333333333322111000 001
Q ss_pred CCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCCC
Q psy2398 83 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG 153 (433)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~g 153 (433)
|... .++++.++. .+++ +-+|.+++|+++.||++|+|+|. .-..-.|+|
T Consensus 104 P~~a---~wi~ekv~~---------------f~P~--~N~v~t~gg~eIsYdylviA~Gi--ql~y~~IkG 152 (446)
T KOG3851|consen 104 PKGA---TWIKEKVKE---------------FNPD--KNTVVTRGGEEISYDYLVIAMGI--QLDYGKIKG 152 (446)
T ss_pred cCCc---HHHHHHHHh---------------cCCC--cCeEEccCCcEEeeeeEeeeeec--eeccchhcC
Confidence 1111 222333333 3332 23577788899999999999999 555556666
No 103
>PRK06834 hypothetical protein; Provisional
Probab=99.31 E-value=4.8e-11 Score=117.58 Aligned_cols=137 Identities=20% Similarity=0.327 Sum_probs=90.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC--Cc-----ccCCCC---CCccccceE-----ee---cCCCcc
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG--GV-----WNSQAS---CGRVYPSLH-----LI---SPKFNT 68 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G--g~-----~~~~~~---~~~~~~~~~-----~~---~~~~~~ 68 (433)
.+||+||||||+|+++|..|++.|++|+|+|+.+... +. +..... .-.+++.+. .. ......
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL 82 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence 3899999999999999999999999999999976421 10 000000 000011000 00 000001
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCC
Q psy2398 69 QVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~ 145 (433)
.+...+..........+..+.+.+.+.+++.++ .++++++|+.++.+++.+.+++.++.++++|+||.|+|.+|.
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv--~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 83 DISDFPTRHNYGLALWQNHIERILAEWVGELGV--PIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred ccccCCCCCCccccccHHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 111111111111234567788888888888777 699999999999888888898888778999999999999774
No 104
>PRK08244 hypothetical protein; Provisional
Probab=99.30 E-value=3.9e-11 Score=119.19 Aligned_cols=136 Identities=22% Similarity=0.320 Sum_probs=88.0
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC---cccCCC----------------CCCccccceEeecCCCcc
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG---VWNSQA----------------SCGRVYPSLHLISPKFNT 68 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg---~~~~~~----------------~~~~~~~~~~~~~~~~~~ 68 (433)
+||+||||||+|+++|..|++.|++|+|+|+.+.... ...... ..+..+............
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 7999999999999999999999999999999865310 000000 001111111111111111
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc--cC-cEEEeCEEEEccCCCCC
Q psy2398 69 QVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS--NG-KKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~--~g-~~~~~d~vIvAtG~~s~ 145 (433)
.+........+....++..+.+.+.+.++..++ .++++++++.++.+++.+++++. ++ .++++|+||.|+|.+|.
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv--~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGV--EIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI 160 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCC--eEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence 111111111111234577888888888888777 58999999999887777777664 34 46899999999999774
No 105
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.29 E-value=4.6e-11 Score=114.94 Aligned_cols=135 Identities=24% Similarity=0.321 Sum_probs=86.9
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccC-CC---CCCcccCCC------C---CCccccceEeecCCCcccCCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEME-SD---LGGVWNSQA------S---CGRVYPSLHLISPKFNTQVPDYP 74 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~-~~---~Gg~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~ 74 (433)
+||+||||||+|+++|+.|++.|++|+++|+. +. .|+...... + ....+......++.........+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 69999999999999999999999999999987 22 222211110 0 00112222333322211001111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc------C--cEEEeCEEEEccCCCCC
Q psy2398 75 MPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN------G--KKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~------g--~~~~~d~vIvAtG~~s~ 145 (433)
.+..+.....+..+.+++.+.+.+.++ .++ ..+|+.+..+++.+.+++.+ + .++.+|.||.|+|.+|.
T Consensus 81 ~~~~~~~~~~r~~fd~~L~~~a~~~G~--~v~-~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 81 SEDGYVGMVRREVFDSYLRERAQKAGA--ELI-HGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred CCCCceEeeeHHHHHHHHHHHHHhCCC--EEE-eeEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence 111111236788999999999988887 354 44688888877888887653 1 36899999999999764
No 106
>PRK08013 oxidoreductase; Provisional
Probab=99.29 E-value=5.3e-11 Score=115.01 Aligned_cols=138 Identities=14% Similarity=0.146 Sum_probs=90.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC---Cc-ccCC----CC------------------CCccccceE
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG---GV-WNSQ----AS------------------CGRVYPSLH 60 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G---g~-~~~~----~~------------------~~~~~~~~~ 60 (433)
.+||+||||||+|+++|..|++.|++|+|+|+.+... |. .... .+ ....+....
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 3899999999999999999999999999999987532 10 0000 00 001112222
Q ss_pred eecCC--CcccCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEE
Q psy2398 61 LISPK--FNTQVPDYPMPDNY-PVYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFI 136 (433)
Q Consensus 61 ~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~v 136 (433)
..... ....+......... .....+..+.+.+.+.+... ++ .++++++|+.++.+++.+.+++.+|+++++|.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v--~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lv 160 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDI--TLLAPAELQQVAWGENEAFLTLKDGSMLTARLV 160 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCc--EEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEE
Confidence 11111 00111110000000 11345778888888877765 45 588999999998877788899888889999999
Q ss_pred EEccCCCCCC
Q psy2398 137 AVCNGAQRVA 146 (433)
Q Consensus 137 IvAtG~~s~p 146 (433)
|.|+|.+|.-
T Consensus 161 VgADG~~S~v 170 (400)
T PRK08013 161 VGADGANSWL 170 (400)
T ss_pred EEeCCCCcHH
Confidence 9999998744
No 107
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.29 E-value=4.9e-11 Score=115.66 Aligned_cols=137 Identities=15% Similarity=0.254 Sum_probs=90.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcC--CCeEEEccCCCCCCc---------------------ccCCCCCCccccceEeec
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGN--INYDLYEMESDLGGV---------------------WNSQASCGRVYPSLHLIS 63 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g--~~v~v~e~~~~~Gg~---------------------~~~~~~~~~~~~~~~~~~ 63 (433)
++||+||||||+|+++|..|++.| ++|+|+|+.+..... |..-...+.....+....
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 479999999999999999999985 999999997642100 000000000111111111
Q ss_pred CC-------CcccCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCE
Q psy2398 64 PK-------FNTQVPDYP-MPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDF 135 (433)
Q Consensus 64 ~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~ 135 (433)
.. ....+.... ....+.....+..+.+.+.+.+...++ .++++++|+.++.+++.+.+++.++.++.+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~ 158 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGI--DLREATSVTDFETRDEGVTVTLSDGSVLEARL 158 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEcCCEEEEEECCCCEEEeCE
Confidence 00 001111000 001111235678899999888888777 58899999999988888999988888899999
Q ss_pred EEEccCCCCC
Q psy2398 136 IAVCNGAQRV 145 (433)
Q Consensus 136 vIvAtG~~s~ 145 (433)
||.|+|.+|.
T Consensus 159 vI~AdG~~S~ 168 (403)
T PRK07333 159 LVAADGARSK 168 (403)
T ss_pred EEEcCCCChH
Confidence 9999999664
No 108
>PRK10015 oxidoreductase; Provisional
Probab=99.29 E-value=1.1e-10 Score=113.38 Aligned_cols=137 Identities=9% Similarity=0.121 Sum_probs=86.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc------ccCCCCCCccccce---------------Eeec
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV------WNSQASCGRVYPSL---------------HLIS 63 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~------~~~~~~~~~~~~~~---------------~~~~ 63 (433)
+.++||+||||||+|++||+.|++.|++|+++||.+..|.. ...... ...++.+ .+..
T Consensus 3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~ 81 (429)
T PRK10015 3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTL-EAIIPGFAASAPVERKVTREKISFLT 81 (429)
T ss_pred ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccH-HHHcccccccCCccccccceeEEEEe
Confidence 45699999999999999999999999999999998765421 110000 0011111 0000
Q ss_pred CC--CcccCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEc
Q psy2398 64 PK--FNTQVPDYP--MPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVC 139 (433)
Q Consensus 64 ~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvA 139 (433)
.. ....+.... .+........+..+.+++.+.++..++ .++.+++|+.+..+++.+.....++.++.+|.||+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv--~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~A 159 (429)
T PRK10015 82 EESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGA--QFIPGVRVDALVREGNKVTGVQAGDDILEANVVILA 159 (429)
T ss_pred CCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCC--EEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEc
Confidence 00 000111000 000011223578888889888888887 588899999988766666543334457999999999
Q ss_pred cCCCC
Q psy2398 140 NGAQR 144 (433)
Q Consensus 140 tG~~s 144 (433)
+|.++
T Consensus 160 dG~~s 164 (429)
T PRK10015 160 DGVNS 164 (429)
T ss_pred cCcch
Confidence 99854
No 109
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.28 E-value=1.1e-11 Score=106.57 Aligned_cols=129 Identities=18% Similarity=0.302 Sum_probs=83.5
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCC------CCcccc-----------------ceEeecC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQAS------CGRVYP-----------------SLHLISP 64 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~------~~~~~~-----------------~~~~~~~ 64 (433)
.+|+|||+|++|++||..|++.|.+|+||||+..+||....+.- ++..|- ++.....
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~ 81 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWT 81 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeecc
Confidence 58999999999999999999999999999999999987665432 111111 1111111
Q ss_pred CCcccCCCC---CCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCc-EEEeCEEEEcc
Q psy2398 65 KFNTQVPDY---PMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK-KKKYDFIAVCN 140 (433)
Q Consensus 65 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~-~~~~d~vIvAt 140 (433)
..+.++.+. +.+...+ |.....+....+..++. + ++.++++|+.+.+.++.|++++++|. ...||.||+|.
T Consensus 82 ~~~~~~~~~~~~~~~d~~p-yvg~pgmsalak~LAtd--L--~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~ 156 (331)
T COG3380 82 PAVWTFTGDGSPPRGDEDP-YVGEPGMSALAKFLATD--L--TVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAI 156 (331)
T ss_pred ccccccccCCCCCCCCCCc-cccCcchHHHHHHHhcc--c--hhhhhhhhhhheecCCeeEEEecCCCcccccceEEEec
Confidence 222223221 1111111 33222233333333333 3 47899999999999999999997654 47899999987
Q ss_pred C
Q psy2398 141 G 141 (433)
Q Consensus 141 G 141 (433)
=
T Consensus 157 P 157 (331)
T COG3380 157 P 157 (331)
T ss_pred C
Confidence 6
No 110
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.27 E-value=3.2e-11 Score=116.67 Aligned_cols=139 Identities=19% Similarity=0.224 Sum_probs=89.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc---ccCCCC----------------CCccccceEeecC--
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV---WNSQAS----------------CGRVYPSLHLISP-- 64 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~---~~~~~~----------------~~~~~~~~~~~~~-- 64 (433)
.+.||+|||||++|+++|..|++.|++|+|+|+.+.++.. ...... .+...........
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVD 82 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCC
Confidence 3579999999999999999999999999999998765311 000000 0000111111100
Q ss_pred -CCcccCCCCC-CCCC--CC-CCCCHHHHHHHHHHHHHHcC-CCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEE
Q psy2398 65 -KFNTQVPDYP-MPDN--YP-VYPNHSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAV 138 (433)
Q Consensus 65 -~~~~~~~~~~-~~~~--~~-~~~~~~~~~~~l~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIv 138 (433)
.....++... .... .+ ....+.++.+.+.+.+.+.+ + +++++++|+.++.+++.+.+++.+|.++.+|.||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v--~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~ 160 (396)
T PRK08163 83 AEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLV--EFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIG 160 (396)
T ss_pred CCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCc--EEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEE
Confidence 0000000000 0000 01 12457778888887776654 4 58889999999887778889888888899999999
Q ss_pred ccCCCCCC
Q psy2398 139 CNGAQRVA 146 (433)
Q Consensus 139 AtG~~s~p 146 (433)
|+|.+|..
T Consensus 161 AdG~~S~~ 168 (396)
T PRK08163 161 CDGVKSVV 168 (396)
T ss_pred CCCcChHH
Confidence 99997754
No 111
>PRK06184 hypothetical protein; Provisional
Probab=99.27 E-value=7.2e-11 Score=117.50 Aligned_cols=137 Identities=18% Similarity=0.290 Sum_probs=87.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC--CCC-----------------CCccccceEeecC-CC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS--QAS-----------------CGRVYPSLHLISP-KF 66 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~--~~~-----------------~~~~~~~~~~~~~-~~ 66 (433)
++||+||||||+|+++|..|++.|++|+|||+.+.....-.- -.+ .+..+........ ..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 82 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 82 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence 489999999999999999999999999999998754210000 000 0111111111111 00
Q ss_pred ccc--CCC-C-C---CCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEE---ccCcEEEeCEE
Q psy2398 67 NTQ--VPD-Y-P---MPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL---SNGKKKKYDFI 136 (433)
Q Consensus 67 ~~~--~~~-~-~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~---~~g~~~~~d~v 136 (433)
+.. +.. . + .+.......++..+.+.+.+.+.+.++ +++++++|+.++.+++.+++++ .++.++++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv--~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~v 160 (502)
T PRK06184 83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGH--RVEFGCELVGFEQDADGVTARVAGPAGEETVRARYL 160 (502)
T ss_pred EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCC--EEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEE
Confidence 000 000 0 0 000011123466777888888887776 6999999999998877777776 45567999999
Q ss_pred EEccCCCCC
Q psy2398 137 AVCNGAQRV 145 (433)
Q Consensus 137 IvAtG~~s~ 145 (433)
|.|+|.+|.
T Consensus 161 VgADG~~S~ 169 (502)
T PRK06184 161 VGADGGRSF 169 (502)
T ss_pred EECCCCchH
Confidence 999999874
No 112
>PRK07588 hypothetical protein; Provisional
Probab=99.27 E-value=6.5e-11 Score=114.20 Aligned_cols=137 Identities=16% Similarity=0.214 Sum_probs=88.3
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC---CCcccCCCC----------------CCccccceEeecCC--C
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL---GGVWNSQAS----------------CGRVYPSLHLISPK--F 66 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~---Gg~~~~~~~----------------~~~~~~~~~~~~~~--~ 66 (433)
.||+|||||++|+++|..|++.|++|+|+|+.+.. |..+..... .+..+..+...... .
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 48999999999999999999999999999988753 221211110 01111222211111 1
Q ss_pred cccCCCCCCCCCC--C-CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCC
Q psy2398 67 NTQVPDYPMPDNY--P-VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ 143 (433)
Q Consensus 67 ~~~~~~~~~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~ 143 (433)
...++........ . ....+.++.+.+.+.+.. ++ .++++++|++++.+++.++|++++|+++.+|.||.|+|.+
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~v--~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~ 157 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-QV--ETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLH 157 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-Ce--EEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 1111111111111 1 124567777776654432 34 6899999999998888899999999889999999999997
Q ss_pred CCCC
Q psy2398 144 RVAR 147 (433)
Q Consensus 144 s~p~ 147 (433)
|.-+
T Consensus 158 S~vR 161 (391)
T PRK07588 158 SHVR 161 (391)
T ss_pred ccch
Confidence 7544
No 113
>PRK06753 hypothetical protein; Provisional
Probab=99.26 E-value=4.9e-11 Score=114.37 Aligned_cols=135 Identities=20% Similarity=0.352 Sum_probs=87.7
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc---ccCCCC----------------CCccccceEeecCCCcc
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV---WNSQAS----------------CGRVYPSLHLISPKFNT 68 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~---~~~~~~----------------~~~~~~~~~~~~~~~~~ 68 (433)
++|+|||||++|+++|..|++.|++|+|+|+.+..... ...... .+.....+....+...
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~- 79 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT- 79 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC-
Confidence 37999999999999999999999999999998764211 100000 0011111222111110
Q ss_pred cCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCC
Q psy2398 69 QVPDYPMPDN-YPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVAR 147 (433)
Q Consensus 69 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~ 147 (433)
.+...+.... ......+..+.+.+.+.+.. . .++++++|++++.+++.+.+++++|.++.+|.||.|+|.+|.-+
T Consensus 80 ~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~vR 155 (373)
T PRK06753 80 LLNKVKLKSNTLNVTLHRQTLIDIIKSYVKE--D--AIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKVR 155 (373)
T ss_pred EEeecccccCCccccccHHHHHHHHHHhCCC--c--eEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHHH
Confidence 0001111100 11235677777777766542 2 58999999999988888999999988899999999999977433
No 114
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.26 E-value=9.4e-11 Score=112.68 Aligned_cols=138 Identities=21% Similarity=0.231 Sum_probs=93.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC-C---CC--CcccCCC--------------C-CCccccceEeecCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES-D---LG--GVWNSQA--------------S-CGRVYPSLHLISPK 65 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~-~---~G--g~~~~~~--------------~-~~~~~~~~~~~~~~ 65 (433)
++||+|||||++|+++|..|++.|++|+|||+.+ . .| .....+. . ....+.........
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 4799999999999999999999999999999972 2 11 0000000 0 11122222222211
Q ss_pred -CcccCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHcC-CCcceEeCcEEEEEEEeCCeEEEEEc-cCcEEEeCEEEEccC
Q psy2398 66 -FNTQVPDYPMPDN-YPVYPNHSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELS-NGKKKKYDFIAVCNG 141 (433)
Q Consensus 66 -~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~v~~~-~g~~~~~d~vIvAtG 141 (433)
....++....... .....++.++.+.+.+.+...+ + .++++++|+.++.+++.+++++. +|++++||.||.|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v--~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG 159 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNV--TLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADG 159 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCc--EEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCC
Confidence 1222222222211 1123568889999999888775 5 58999999999998888889888 898999999999999
Q ss_pred CCCCC
Q psy2398 142 AQRVA 146 (433)
Q Consensus 142 ~~s~p 146 (433)
.+|.-
T Consensus 160 ~~S~v 164 (387)
T COG0654 160 ANSAV 164 (387)
T ss_pred CchHH
Confidence 98743
No 115
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.26 E-value=1.3e-10 Score=116.47 Aligned_cols=139 Identities=19% Similarity=0.300 Sum_probs=91.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc---CCC----------------CCCccccceEeecC--
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN---SQA----------------SCGRVYPSLHLISP-- 64 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~---~~~----------------~~~~~~~~~~~~~~-- 64 (433)
..+||+||||||+|+++|..|++.|++|+|||+.+....... ... ..+.......+...
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g 88 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKG 88 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCC
Confidence 468999999999999999999999999999999876432111 000 01111222222211
Q ss_pred CCcccCCC-CCCCCCCC--CCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeEEEEEc--cC--cEEEeCEE
Q psy2398 65 KFNTQVPD-YPMPDNYP--VYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELS--NG--KKKKYDFI 136 (433)
Q Consensus 65 ~~~~~~~~-~~~~~~~~--~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~v~~~--~g--~~~~~d~v 136 (433)
.....++. ......++ ....+..+.+++.+.+.++ ++ .++++++|+.++.+++++++++. +| .++++|+|
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv--~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~v 166 (538)
T PRK06183 89 RCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHV--RVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYV 166 (538)
T ss_pred CEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCc--EEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEE
Confidence 11112221 00001111 2345677888888877765 56 69999999999988888888876 35 36899999
Q ss_pred EEccCCCCCC
Q psy2398 137 AVCNGAQRVA 146 (433)
Q Consensus 137 IvAtG~~s~p 146 (433)
|.|+|.+|..
T Consensus 167 VgADG~~S~v 176 (538)
T PRK06183 167 VGCDGANSFV 176 (538)
T ss_pred EecCCCchhH
Confidence 9999998754
No 116
>PRK07045 putative monooxygenase; Reviewed
Probab=99.25 E-value=1.6e-10 Score=111.37 Aligned_cols=140 Identities=18% Similarity=0.219 Sum_probs=88.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC---CCcccCCCC----------------CC-ccccceEeec-
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL---GGVWNSQAS----------------CG-RVYPSLHLIS- 63 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~---Gg~~~~~~~----------------~~-~~~~~~~~~~- 63 (433)
+.++||+||||||+|+++|..|++.|++|+|+|+.+.. ++.-...+. .+ .....+....
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHD 82 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecC
Confidence 45689999999999999999999999999999998864 121101100 00 0111111111
Q ss_pred CCCcccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCC--eEEEEEccCcEEEeCEEEEc
Q psy2398 64 PKFNTQVPDYPMP-DNYPVYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYED--IWEVELSNGKKKKYDFIAVC 139 (433)
Q Consensus 64 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~--~~~v~~~~g~~~~~d~vIvA 139 (433)
......++..... ..+....++.++.+.+.+.+... ++ +++++++|+.++.+++ .+.|++.+|+++.+|.||.|
T Consensus 83 g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgA 160 (388)
T PRK07045 83 KELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNV--RLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGA 160 (388)
T ss_pred CcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCe--eEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEEC
Confidence 1111111110000 01111245677888777776543 44 6899999999988633 35788888888999999999
Q ss_pred cCCCCCC
Q psy2398 140 NGAQRVA 146 (433)
Q Consensus 140 tG~~s~p 146 (433)
+|.+|.-
T Consensus 161 DG~~S~v 167 (388)
T PRK07045 161 DGARSMI 167 (388)
T ss_pred CCCChHH
Confidence 9998743
No 117
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.25 E-value=1.1e-10 Score=111.74 Aligned_cols=137 Identities=15% Similarity=0.169 Sum_probs=90.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC-------CC----------------cccCCCCCCccccceEeec
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL-------GG----------------VWNSQASCGRVYPSLHLIS 63 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~-------Gg----------------~~~~~~~~~~~~~~~~~~~ 63 (433)
++||+|||||++|+++|..|++.|++|+|+|+.+.. +. .|..-......+..+....
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 80 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVD 80 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEE
Confidence 469999999999999999999999999999986321 11 1110000011122222211
Q ss_pred CC--CcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcC-CCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEcc
Q psy2398 64 PK--FNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCN 140 (433)
Q Consensus 64 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAt 140 (433)
.. ....+.... .........+.++.+.+.+.+...+ + .++++++++++..+++.+.++++++ ++++|.||.|+
T Consensus 81 ~~g~~~~~~~~~~-~~~~g~~v~r~~L~~~L~~~~~~~~~v--~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgAD 156 (374)
T PRK06617 81 NKASEILDLRNDA-DAVLGYVVKNSDFKKILLSKITNNPLI--TLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICD 156 (374)
T ss_pred CCCceEEEecCCC-CCCcEEEEEHHHHHHHHHHHHhcCCCc--EEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeC
Confidence 11 111221110 0011123468889999988887765 4 5778999999988878888998776 89999999999
Q ss_pred CCCCCCC
Q psy2398 141 GAQRVAR 147 (433)
Q Consensus 141 G~~s~p~ 147 (433)
|.+|.-+
T Consensus 157 G~~S~vR 163 (374)
T PRK06617 157 GANSKVR 163 (374)
T ss_pred CCCchhH
Confidence 9987544
No 118
>PLN02463 lycopene beta cyclase
Probab=99.25 E-value=4.3e-11 Score=115.80 Aligned_cols=131 Identities=17% Similarity=0.197 Sum_probs=87.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC-----CCcccCCCCCC-------ccccceEeecCCCcccCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL-----GGVWNSQASCG-------RVYPSLHLISPKFNTQVPDY 73 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~-----Gg~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 73 (433)
..+||+||||||+|+++|..|++.|++|+|+|+.+.. .|.|...-... ..|+............
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~---- 102 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKK---- 102 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCc----
Confidence 3579999999999999999999999999999997642 12222100000 0111111100000000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCC
Q psy2398 74 PMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
..........+.++.+++.+.+...++ +++ ..+|++|+.+++.+.|++++|.++.+|.||.|+|..+
T Consensus 103 -~~~~~y~~V~R~~L~~~Ll~~~~~~GV--~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 103 -DLDRPYGRVNRKKLKSKMLERCIANGV--QFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred -cccCcceeEEHHHHHHHHHHHHhhcCC--EEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCc
Confidence 000011234688888999888887776 343 5789999988888999999988899999999999954
No 119
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.24 E-value=1e-10 Score=112.93 Aligned_cols=139 Identities=17% Similarity=0.256 Sum_probs=88.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC----CC---------------------cccCCCC-CCccccc
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL----GG---------------------VWNSQAS-CGRVYPS 58 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~----Gg---------------------~~~~~~~-~~~~~~~ 58 (433)
.+.+||+|||||++|+++|..|++.|++|+|+|+.+.. ++ .|..... ....+..
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 82 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRR 82 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccce
Confidence 45689999999999999999999999999999987531 11 1110000 0000111
Q ss_pred eEe-ecCCCcccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCE
Q psy2398 59 LHL-ISPKFNTQVPDYPMPDNYP-VYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDF 135 (433)
Q Consensus 59 ~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~ 135 (433)
... ........+.......... ....+..+.+.+.+.++.. ++ .++++++|+.++.+++.+.|++.++.++++|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~ 160 (391)
T PRK08020 83 LETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNV--TLRCPASLQALQRDDDGWELTLADGEEIQAKL 160 (391)
T ss_pred EEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCc--EEEcCCeeEEEEEcCCeEEEEECCCCEEEeCE
Confidence 110 0001111111100000001 1245677778887777665 65 57889999999887788999988888899999
Q ss_pred EEEccCCCCC
Q psy2398 136 IAVCNGAQRV 145 (433)
Q Consensus 136 vIvAtG~~s~ 145 (433)
||.|+|.+|.
T Consensus 161 vI~AdG~~S~ 170 (391)
T PRK08020 161 VIGADGANSQ 170 (391)
T ss_pred EEEeCCCCch
Confidence 9999999774
No 120
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.24 E-value=8.6e-11 Score=114.39 Aligned_cols=139 Identities=16% Similarity=0.259 Sum_probs=85.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC-----CcccCCCC----------------CCccccceEeecC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG-----GVWNSQAS----------------CGRVYPSLHLISP 64 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G-----g~~~~~~~----------------~~~~~~~~~~~~~ 64 (433)
..+||+|||||++|+++|..|++.|++|+|+|+.+... ........ .............
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA 96 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence 45899999999999999999999999999999987542 11110000 0011111111111
Q ss_pred C--CcccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeEEEEEcc-C--cEEEeCEEE
Q psy2398 65 K--FNTQVPDYPMPDNYPV-YPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSN-G--KKKKYDFIA 137 (433)
Q Consensus 65 ~--~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~v~~~~-g--~~~~~d~vI 137 (433)
. ....+........... ...+..+.+.+.+.+... ++ .++++++|++++.+++.+.|++.+ + .++++|.||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v--~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvI 174 (415)
T PRK07364 97 DYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNI--TWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVV 174 (415)
T ss_pred CCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCc--EEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEE
Confidence 1 1111211111111111 122456777777766665 45 578899999998877788888764 2 358999999
Q ss_pred EccCCCCCC
Q psy2398 138 VCNGAQRVA 146 (433)
Q Consensus 138 vAtG~~s~p 146 (433)
.|+|.+|.-
T Consensus 175 gADG~~S~v 183 (415)
T PRK07364 175 AADGARSPI 183 (415)
T ss_pred EeCCCCchh
Confidence 999998744
No 121
>PRK06185 hypothetical protein; Provisional
Probab=99.24 E-value=1.4e-10 Score=112.58 Aligned_cols=142 Identities=20% Similarity=0.313 Sum_probs=88.2
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC-----CCcccCCC--------------C-CCccccceE
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL-----GGVWNSQA--------------S-CGRVYPSLH 60 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~-----Gg~~~~~~--------------~-~~~~~~~~~ 60 (433)
|. ....+||+|||||++|+++|..|++.|++|+|+|+.+.. |..+.... . ....+..+.
T Consensus 1 ~~-~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~ 79 (407)
T PRK06185 1 MA-EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLR 79 (407)
T ss_pred CC-ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEE
Confidence 44 345689999999999999999999999999999997543 11111100 0 000111122
Q ss_pred eecCCC---cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeE---EEEEccCc-EEE
Q psy2398 61 LISPKF---NTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIW---EVELSNGK-KKK 132 (433)
Q Consensus 61 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~---~v~~~~g~-~~~ 132 (433)
...... ...+...+.+.....+..+..+.+.+.+.+.+. ++ .++++++|+.+..+++.+ .+...+++ ++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v--~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~ 157 (407)
T PRK06185 80 FEIGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNF--TLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIR 157 (407)
T ss_pred EEECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCc--EEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEE
Confidence 111111 112221111111222456778888888877665 55 588899999998875554 33334553 689
Q ss_pred eCEEEEccCCCCC
Q psy2398 133 YDFIAVCNGAQRV 145 (433)
Q Consensus 133 ~d~vIvAtG~~s~ 145 (433)
+|.||.|+|.+|.
T Consensus 158 a~~vI~AdG~~S~ 170 (407)
T PRK06185 158 ADLVVGADGRHSR 170 (407)
T ss_pred eCEEEECCCCchH
Confidence 9999999999873
No 122
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.24 E-value=1.1e-10 Score=112.50 Aligned_cols=132 Identities=17% Similarity=0.171 Sum_probs=87.2
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEe-----ecCCCc--ccCCCCCCCCCCCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHL-----ISPKFN--TQVPDYPMPDNYPV 81 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~ 81 (433)
||+|||||++|+++|..|++.|++|+|+|+.+.+|+.+...-... ..+.+.+ ..-... ..++........+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDD-DLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAY 79 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHh-hhhhhchhhHHhhcCCCceEEecCCcchhcCCce
Confidence 799999999999999999999999999999887776332210000 0000000 000000 00111111111111
Q ss_pred -CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCeEEEEEccCcEEEeCEEEEccCCCC
Q psy2398 82 -YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 82 -~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
...+..+.+++.+.+...++ .+ +..+|..+..+ ++.|.|++.++.+++++.||.|+|.++
T Consensus 80 ~~i~~~~l~~~l~~~~~~~gv--~~-~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 80 GSVDSTRLHEELLQKCPEGGV--LW-LERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred eEEcHHHHHHHHHHHHHhcCc--EE-EccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 25678889999888888776 34 46688888876 678889988887899999999999965
No 123
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.24 E-value=1.4e-10 Score=112.44 Aligned_cols=137 Identities=14% Similarity=0.219 Sum_probs=87.3
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc------ccCCC----C------------------CCccccce
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV------WNSQA----S------------------CGRVYPSL 59 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~------~~~~~----~------------------~~~~~~~~ 59 (433)
+||+|||||++|+++|..|++.|++|+|+|+.+...+. +.... + ....+..+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 82 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM 82 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence 79999999999999999999999999999997621100 00000 0 00011111
Q ss_pred EeecCCC--cccCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEE
Q psy2398 60 HLISPKF--NTQVPDYPMPDNY-PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFI 136 (433)
Q Consensus 60 ~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~v 136 (433)
....... ...|+........ .....+..+.+.+.+.+.+.++ +++++++|+.++.+++.+.|++.+|.++.+|.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~v 160 (405)
T PRK05714 83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDI--GLLANARLEQMRRSGDDWLLTLADGRQLRAPLV 160 (405)
T ss_pred EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCC--EEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEE
Confidence 1111111 1111110000000 1123456677777666666666 588899999999888889999988888999999
Q ss_pred EEccCCCCCC
Q psy2398 137 AVCNGAQRVA 146 (433)
Q Consensus 137 IvAtG~~s~p 146 (433)
|.|+|.+|..
T Consensus 161 VgAdG~~S~v 170 (405)
T PRK05714 161 VAADGANSAV 170 (405)
T ss_pred EEecCCCchh
Confidence 9999998743
No 124
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.22 E-value=1.4e-10 Score=111.69 Aligned_cols=135 Identities=16% Similarity=0.246 Sum_probs=88.9
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC--------cccCCCC-----------------CCccccceEeec
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG--------VWNSQAS-----------------CGRVYPSLHLIS 63 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg--------~~~~~~~-----------------~~~~~~~~~~~~ 63 (433)
||+|||||++|+++|..|++.|++|+|+|+.+..+- ....... ....+.......
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 799999999999999999999999999999875421 0110000 000111111111
Q ss_pred CCC--cccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHcC-CCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEc
Q psy2398 64 PKF--NTQVPDYPMPD-NYPVYPNHSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVC 139 (433)
Q Consensus 64 ~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvA 139 (433)
... ...+....... .......+..+.+.+.+.+.+.+ + .++++++|+.++.+++.+.+++.+|.++.+|.||.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~--~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~a 158 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNV--TLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGA 158 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCc--EEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEe
Confidence 110 01111100000 01123457788888888887766 5 589999999998888888999888888999999999
Q ss_pred cCCCCC
Q psy2398 140 NGAQRV 145 (433)
Q Consensus 140 tG~~s~ 145 (433)
+|.+|.
T Consensus 159 dG~~S~ 164 (385)
T TIGR01988 159 DGANSK 164 (385)
T ss_pred CCCCCH
Confidence 999764
No 125
>PRK05868 hypothetical protein; Validated
Probab=99.22 E-value=1.9e-10 Score=109.81 Aligned_cols=138 Identities=12% Similarity=0.140 Sum_probs=84.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC---cccCCCC----------------CCccccceEeecCCC-
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG---VWNSQAS----------------CGRVYPSLHLISPKF- 66 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg---~~~~~~~----------------~~~~~~~~~~~~~~~- 66 (433)
|+||+|||||++|+++|..|++.|++|+|||+.+.... ....... ...............
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 80 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGN 80 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCC
Confidence 35999999999999999999999999999999876421 1111110 011112222221111
Q ss_pred -cccCCC-CCCCCCC--CC-CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccC
Q psy2398 67 -NTQVPD-YPMPDNY--PV-YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNG 141 (433)
Q Consensus 67 -~~~~~~-~~~~~~~--~~-~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG 141 (433)
+..... .+..... +. ...+.++.+.+.+.+ ..++ .++++++|+.++.+++.++|++.++.++++|.||.|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v--~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG 157 (372)
T PRK05868 81 ELFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSV--EYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADG 157 (372)
T ss_pred EEeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCc--EEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCC
Confidence 000000 0000000 00 112455555544322 2344 58999999999887788899999998999999999999
Q ss_pred CCCCCC
Q psy2398 142 AQRVAR 147 (433)
Q Consensus 142 ~~s~p~ 147 (433)
.+|.-+
T Consensus 158 ~~S~vR 163 (372)
T PRK05868 158 LHSNVR 163 (372)
T ss_pred CCchHH
Confidence 987543
No 126
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.22 E-value=8.8e-11 Score=105.41 Aligned_cols=132 Identities=13% Similarity=0.197 Sum_probs=83.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc-ccCCCCCCccccceEeecC--CCcccCCCCCCCC--CCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV-WNSQASCGRVYPSLHLISP--KFNTQVPDYPMPD--NYP 80 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~ 80 (433)
..+||+||||||+|++||+.|++.|++|+++|+...+||. |... ..++....... ..+..+ ..++.. ...
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg----~~~~~~~v~~~~~~~l~~~-gv~~~~~~~g~ 98 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGG----MLFNKIVVQEEADEILDEF-GIRYKEVEDGL 98 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCc----cccccccchHHHHHHHHHC-CCCceeecCcc
Confidence 3589999999999999999999999999999999887763 3211 01111111000 000000 001100 001
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC-e-EEEEEc-----------cCcEEEeCEEEEccCCCC
Q psy2398 81 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-I-WEVELS-----------NGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~-~-~~v~~~-----------~g~~~~~d~vIvAtG~~s 144 (433)
....+.++...+...+.+.++ .++++++|+.+..+++ . +-+... +..++.++.||+|||+++
T Consensus 99 ~~vd~~~l~~~L~~~A~~~Gv--~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 99 YVADSVEAAAKLAAAAIDAGA--KIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred eeccHHHHHHHHHHHHHHcCC--EEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 124567888888888888887 6889999999876533 2 212111 124689999999999854
No 127
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.20 E-value=2.2e-10 Score=102.51 Aligned_cols=132 Identities=17% Similarity=0.238 Sum_probs=84.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC-CcccCCCCCCccccceEeecC-CCcccCCCCCCCCCCC--C
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG-GVWNSQASCGRVYPSLHLISP-KFNTQVPDYPMPDNYP--V 81 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G-g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~ 81 (433)
..+||+||||||+|+++|+.|++.|++|+|+||...+| +.|... ..++......+ ..+..-...+...... .
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg----~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~ 95 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGG----MLFSKIVVEKPAHEILDEFGIRYEDEGDGYV 95 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCC----cceecccccchHHHHHHHCCCCeeeccCceE
Confidence 45899999999999999999999999999999998876 444322 11222111110 0000000111111111 1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCe---EEEEEc-----------cCcEEEeCEEEEccCCC
Q psy2398 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI---WEVELS-----------NGKKKKYDFIAVCNGAQ 143 (433)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~---~~v~~~-----------~g~~~~~d~vIvAtG~~ 143 (433)
...+.++.+.+...+.+.++ .+++++.|+.+..+++. .-|.++ +..++.++.||.|||+.
T Consensus 96 ~~~~~el~~~L~~~a~e~GV--~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 96 VADSAEFISTLASKALQAGA--KIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred EeeHHHHHHHHHHHHHHcCC--EEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 23467888888888888887 58899999998876442 112221 12368999999999974
No 128
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.20 E-value=2.4e-10 Score=110.06 Aligned_cols=136 Identities=15% Similarity=0.184 Sum_probs=88.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCC---C--CccccceE----eecCCCcccCC----CC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQAS---C--GRVYPSLH----LISPKFNTQVP----DY 73 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~---~--~~~~~~~~----~~~~~~~~~~~----~~ 73 (433)
++||+||||||||++||+.|++.|++|+++|++..+|.-...... . ..+.+... .........+. ..
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~ 82 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAI 82 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEE
Confidence 589999999999999999999999999999999887652222100 0 00000000 00000000000 00
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc-CcEEEeCEEEEccCCCC
Q psy2398 74 PMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN-GKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~-g~~~~~d~vIvAtG~~s 144 (433)
..+........+..+.++|...+++.|. .+..++++..+..+++.+.+.... +.++++++||.|+|.++
T Consensus 83 ~~~~~~~y~v~R~~fd~~La~~A~~aGa--e~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 83 EVPVGEGYIVDRAKFDKWLAERAEEAGA--ELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred ecCCCceEEEEhHHhhHHHHHHHHHcCC--EEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence 0010111234588899999999999998 589999999999887666555444 35799999999999854
No 129
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.20 E-value=2.5e-10 Score=110.13 Aligned_cols=134 Identities=16% Similarity=0.277 Sum_probs=86.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC---CcccCCC----C-------CCcccc-----------ceEe
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG---GVWNSQA----S-------CGRVYP-----------SLHL 61 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G---g~~~~~~----~-------~~~~~~-----------~~~~ 61 (433)
.+||+|||||++|+++|..|++.|++|+|+|+.+... ..|.... + .-..+. .+..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 84 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRV 84 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEE
Confidence 4799999999999999999999999999999987642 2222110 0 000000 0000
Q ss_pred ecCC-CcccCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHcC-CCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEE
Q psy2398 62 ISPK-FNTQVPDYPMPDNYP---VYPNHSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFI 136 (433)
Q Consensus 62 ~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~v 136 (433)
.... ....+... ....+ ....+..+.+.+.+.+++.+ + .++ +++|+.++.+++.+.|++.++.++.+|.|
T Consensus 85 ~~~~~~~~~~~~~--~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v--~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~v 159 (388)
T PRK07608 85 FGDAHARLHFSAY--QAGVPQLAWIVESSLIERALWAALRFQPNL--TWF-PARAQGLEVDPDAATLTLADGQVLRADLV 159 (388)
T ss_pred EECCCceeEeecc--ccCCCCCEEEEEhHHHHHHHHHHHHhCCCc--EEE-cceeEEEEecCCeEEEEECCCCEEEeeEE
Confidence 0000 00000000 00011 11346778888888887766 5 355 88999998777889999988878999999
Q ss_pred EEccCCCCC
Q psy2398 137 AVCNGAQRV 145 (433)
Q Consensus 137 IvAtG~~s~ 145 (433)
|.|+|.+|.
T Consensus 160 I~adG~~S~ 168 (388)
T PRK07608 160 VGADGAHSW 168 (388)
T ss_pred EEeCCCCch
Confidence 999999764
No 130
>PRK07236 hypothetical protein; Provisional
Probab=99.20 E-value=7e-10 Score=106.80 Aligned_cols=134 Identities=18% Similarity=0.255 Sum_probs=82.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC----CCcccCCCC------CCccccc---------eEeecCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL----GGVWNSQAS------CGRVYPS---------LHLISPKF 66 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~----Gg~~~~~~~------~~~~~~~---------~~~~~~~~ 66 (433)
..++|+|||||++|+++|..|++.|++|+|+|+.+.. |+....... .-.+... ........
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g 84 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG 84 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence 4589999999999999999999999999999998642 111000000 0000000 00000000
Q ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCC
Q psy2398 67 NTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVA 146 (433)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p 146 (433)
- .+...+.+. ....+..+.+.+. +.+.. ..++++++|+.++.+++.+++++.+|.++.+|.||.|.|.+|..
T Consensus 85 ~-~~~~~~~~~---~~~~~~~l~~~L~---~~~~~-~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 85 R-VVQRRPMPQ---TQTSWNVLYRALR---AAFPA-ERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred C-EeeccCCCc---cccCHHHHHHHHH---HhCCC-cEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchH
Confidence 0 000000000 1123444444443 33321 25899999999998888899999999899999999999998754
Q ss_pred C
Q psy2398 147 R 147 (433)
Q Consensus 147 ~ 147 (433)
+
T Consensus 157 R 157 (386)
T PRK07236 157 R 157 (386)
T ss_pred H
Confidence 4
No 131
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.18 E-value=2.2e-10 Score=110.24 Aligned_cols=134 Identities=18% Similarity=0.237 Sum_probs=86.8
Q ss_pred cEEEECCChHHHHHHHHHHhcC-CCeEEEccCCCCCCc--------c-cCCCC--------------CCccccceEeecC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGN-INYDLYEMESDLGGV--------W-NSQAS--------------CGRVYPSLHLISP 64 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g-~~v~v~e~~~~~Gg~--------~-~~~~~--------------~~~~~~~~~~~~~ 64 (433)
||+||||||+|+++|..|++.| ++|+|+|+.+...-. . ..+.- .+...........
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 999999997643110 0 00000 0000001111100
Q ss_pred C--CcccCC--CCCCCCCCCCCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEc
Q psy2398 65 K--FNTQVP--DYPMPDNYPVYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVC 139 (433)
Q Consensus 65 ~--~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvA 139 (433)
. ....+. ++..+. ......+.++.+.+.+.+... ++ +++++++|+.+..+++.+++++.++.++.+|.||.|
T Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~i~r~~l~~~L~~~~~~~~gv--~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~A 157 (382)
T TIGR01984 81 GHFGATHLRASEFGLPA-LGYVVELADLGQALLSRLALLTNI--QLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAA 157 (382)
T ss_pred CCCceEEechhhcCCCc-cEEEEEcHHHHHHHHHHHHhCCCc--EEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence 0 000010 000000 001245678888888888774 66 588899999998888889999888888999999999
Q ss_pred cCCCCC
Q psy2398 140 NGAQRV 145 (433)
Q Consensus 140 tG~~s~ 145 (433)
+|.+|.
T Consensus 158 dG~~S~ 163 (382)
T TIGR01984 158 DGANSK 163 (382)
T ss_pred cCCChH
Confidence 999763
No 132
>PRK09126 hypothetical protein; Provisional
Probab=99.18 E-value=5.5e-10 Score=107.86 Aligned_cols=137 Identities=12% Similarity=0.158 Sum_probs=84.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC--------CCcccCCC----------------CC-CccccceEe
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL--------GGVWNSQA----------------SC-GRVYPSLHL 61 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~--------Gg~~~~~~----------------~~-~~~~~~~~~ 61 (433)
.+||+||||||+|+++|..|+++|++|+|+|+.+.. |....... .. .........
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV 82 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence 389999999999999999999999999999998652 11000000 00 000011111
Q ss_pred ecCCC--cccCCCCCCC-CCCCCCCCHHHHHHHHHHHHH-HcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEE
Q psy2398 62 ISPKF--NTQVPDYPMP-DNYPVYPNHSMMLDYLRSYAK-KFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIA 137 (433)
Q Consensus 62 ~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~-~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vI 137 (433)
..... ...++..... .......++..+.+.+.+.+. ..++ .++++++|+.++.+++.+.|++++|.++.+|.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~--~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI 160 (392)
T PRK09126 83 LNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGI--ELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLV 160 (392)
T ss_pred EcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCc--EEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEE
Confidence 11110 0111110000 000111344556555555443 3456 5899999999988777888988888889999999
Q ss_pred EccCCCCC
Q psy2398 138 VCNGAQRV 145 (433)
Q Consensus 138 vAtG~~s~ 145 (433)
.|+|.+|.
T Consensus 161 ~AdG~~S~ 168 (392)
T PRK09126 161 AADSRFSA 168 (392)
T ss_pred EeCCCCch
Confidence 99999664
No 133
>PRK06126 hypothetical protein; Provisional
Probab=99.18 E-value=7.5e-10 Score=111.46 Aligned_cols=143 Identities=18% Similarity=0.245 Sum_probs=88.5
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc--ccCCCC-----------------CCcc--c--c
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV--WNSQAS-----------------CGRV--Y--P 57 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~--~~~~~~-----------------~~~~--~--~ 57 (433)
|.|+...++|+||||||+|+++|..|+++|++|+|||+.+..... ...-.+ .+.. + .
T Consensus 1 ~~~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~ 80 (545)
T PRK06126 1 AMENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTD 80 (545)
T ss_pred CCCCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCC
Confidence 345567789999999999999999999999999999988642210 000000 0000 0 0
Q ss_pred ceEee--cCCCcccCCC--CC----C--------C-CCCCCCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCC
Q psy2398 58 SLHLI--SPKFNTQVPD--YP----M--------P-DNYPVYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYED 119 (433)
Q Consensus 58 ~~~~~--~~~~~~~~~~--~~----~--------~-~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~ 119 (433)
..... ....+..+.. .. . . .......++..+.+.+.+.+.+. ++ .++++++|+.++.+++
T Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v--~i~~~~~v~~i~~~~~ 158 (545)
T PRK06126 81 IAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGV--TLRYGHRLTDFEQDAD 158 (545)
T ss_pred ceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCc--eEEeccEEEEEEECCC
Confidence 00000 0011111100 00 0 0 00012345677888888888765 55 6999999999998777
Q ss_pred eEEEEEcc---Cc--EEEeCEEEEccCCCCC
Q psy2398 120 IWEVELSN---GK--KKKYDFIAVCNGAQRV 145 (433)
Q Consensus 120 ~~~v~~~~---g~--~~~~d~vIvAtG~~s~ 145 (433)
.+++++.+ ++ ++.+|+||.|+|.+|.
T Consensus 159 ~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 159 GVTATVEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred eEEEEEEECCCCcEEEEEEEEEEecCCcchH
Confidence 77776543 43 5899999999999874
No 134
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.17 E-value=5.4e-10 Score=107.43 Aligned_cols=138 Identities=12% Similarity=0.185 Sum_probs=84.6
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC--C--CCcccCC----CC-------CCccccce-----------Ee
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD--L--GGVWNSQ----AS-------CGRVYPSL-----------HL 61 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~--~--Gg~~~~~----~~-------~~~~~~~~-----------~~ 61 (433)
+||+||||||+|+++|..|++.|++|+|||+.+. . .|.+... .+ .-.+++.+ ..
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 7999999999999999999999999999998752 1 1110000 00 00011111 10
Q ss_pred -ecCCCcccCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEE
Q psy2398 62 -ISPKFNTQVPDYPMPDN-YPVYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAV 138 (433)
Q Consensus 62 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIv 138 (433)
........+........ ......+..+...+.+.+... ++ .++++++|++++.+++.+++++.+|.++++|.||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i--~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIg 161 (384)
T PRK08849 84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNL--TLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIG 161 (384)
T ss_pred EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCe--EEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEE
Confidence 00000011111000000 001123445555665555544 34 58889999999988888899999998999999999
Q ss_pred ccCCCCCCC
Q psy2398 139 CNGAQRVAR 147 (433)
Q Consensus 139 AtG~~s~p~ 147 (433)
|+|.+|.-+
T Consensus 162 ADG~~S~vR 170 (384)
T PRK08849 162 ADGANSQVR 170 (384)
T ss_pred ecCCCchhH
Confidence 999987543
No 135
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.17 E-value=5e-10 Score=108.55 Aligned_cols=137 Identities=17% Similarity=0.265 Sum_probs=85.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccC-CC--CCC---------------------cccCCCC-CCccccceEe
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEME-SD--LGG---------------------VWNSQAS-CGRVYPSLHL 61 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~-~~--~Gg---------------------~~~~~~~-~~~~~~~~~~ 61 (433)
.+||+||||||+|+++|..|++.|++|+|+|+. +. ++. .|..-.. ....+..+..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 589999999999999999999999999999986 21 111 1111000 0011111111
Q ss_pred ecCC--CcccCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEE
Q psy2398 62 ISPK--FNTQVPDYPMPDN-YPVYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIA 137 (433)
Q Consensus 62 ~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vI 137 (433)
.... ....|+....... ......+..+.+.+.+.+... ++ .++++++|+.++.+++.+.|++.+|+++++|.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v--~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvI 161 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNV--TLLMPARCQSIAVGESEAWLTLDNGQALTAKLVV 161 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCe--EEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEE
Confidence 1111 0111111000000 001123556666666666554 45 5888999999988878888999888899999999
Q ss_pred EccCCCCC
Q psy2398 138 VCNGAQRV 145 (433)
Q Consensus 138 vAtG~~s~ 145 (433)
.|+|.+|.
T Consensus 162 gADG~~S~ 169 (405)
T PRK08850 162 GADGANSW 169 (405)
T ss_pred EeCCCCCh
Confidence 99999764
No 136
>PRK11445 putative oxidoreductase; Provisional
Probab=99.17 E-value=4.2e-10 Score=106.67 Aligned_cols=136 Identities=17% Similarity=0.230 Sum_probs=83.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC---------CCcccCCCC----CCccc-cceEeecCC--Ccc--
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL---------GGVWNSQAS----CGRVY-PSLHLISPK--FNT-- 68 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~---------Gg~~~~~~~----~~~~~-~~~~~~~~~--~~~-- 68 (433)
++||+||||||+|+++|..|++. ++|+++|+.+.. |+....+.- .-... +......+. .+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 79 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTI 79 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEe
Confidence 47999999999999999999999 999999988743 221111000 00000 000000000 000
Q ss_pred cCCC-CCCCCCCCC-CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEE-ccCc--EEEeCEEEEccCCC
Q psy2398 69 QVPD-YPMPDNYPV-YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL-SNGK--KKKYDFIAVCNGAQ 143 (433)
Q Consensus 69 ~~~~-~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~-~~g~--~~~~d~vIvAtG~~ 143 (433)
.+.. ......... ...+.++.+.+.+.. ..++ .+++++.|+.++.+++.|.|++ .++. ++++|.||.|+|.+
T Consensus 80 ~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv--~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~ 156 (351)
T PRK11445 80 DLANSLTRNYQRSYINIDRHKFDLWLKSLI-PASV--EVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGAN 156 (351)
T ss_pred cccccchhhcCCCcccccHHHHHHHHHHHH-hcCC--EEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCC
Confidence 0100 000001111 256788888777643 4455 5889999999988888898886 4554 58999999999997
Q ss_pred CCC
Q psy2398 144 RVA 146 (433)
Q Consensus 144 s~p 146 (433)
|..
T Consensus 157 S~v 159 (351)
T PRK11445 157 SMV 159 (351)
T ss_pred cHH
Confidence 643
No 137
>PRK07538 hypothetical protein; Provisional
Probab=99.16 E-value=1.5e-09 Score=105.54 Aligned_cols=138 Identities=17% Similarity=0.185 Sum_probs=83.7
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC---CcccCCCC----------------CCccccceEeecCCCcc
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG---GVWNSQAS----------------CGRVYPSLHLISPKFNT 68 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G---g~~~~~~~----------------~~~~~~~~~~~~~~~~~ 68 (433)
+||+|||||++|+++|..|++.|++|+|||+.+.+. ........ .+...............
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~ 80 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR 80 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence 489999999999999999999999999999987542 11111000 00001111111111100
Q ss_pred cCCC-CCCC--CCCCC-CCCHHHHHHHHHHHHHH-cCCCcceEeCcEEEEEEEeCCeEEEEEccC-----cEEEeCEEEE
Q psy2398 69 QVPD-YPMP--DNYPV-YPNHSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDIWEVELSNG-----KKKKYDFIAV 138 (433)
Q Consensus 69 ~~~~-~~~~--~~~~~-~~~~~~~~~~l~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g-----~~~~~d~vIv 138 (433)
.+.. .... ..++. ...+.++.+.|.+.+.+ .+. ..++++++|+.++.+++...+.+.++ .++.+|.||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~-~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIg 159 (413)
T PRK07538 81 IWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGP-DAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIG 159 (413)
T ss_pred EeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCC-cEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEE
Confidence 0000 0000 01111 24578888888776644 453 25899999999987765555655442 3789999999
Q ss_pred ccCCCCCC
Q psy2398 139 CNGAQRVA 146 (433)
Q Consensus 139 AtG~~s~p 146 (433)
|+|.+|.-
T Consensus 160 ADG~~S~v 167 (413)
T PRK07538 160 ADGIHSAV 167 (413)
T ss_pred CCCCCHHH
Confidence 99998753
No 138
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.16 E-value=4.2e-10 Score=108.83 Aligned_cols=137 Identities=16% Similarity=0.148 Sum_probs=83.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhc---CCCeEEEccCCCCCCcc----------cCCC-C---CCccccc----------e
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG---NINYDLYEMESDLGGVW----------NSQA-S---CGRVYPS----------L 59 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~---g~~v~v~e~~~~~Gg~~----------~~~~-~---~~~~~~~----------~ 59 (433)
++||+||||||+|+++|..|+++ |++|+|||+........ .... . .-.+++. .
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~ 82 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI 82 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence 48999999999999999999998 99999999953211000 0000 0 0001111 1
Q ss_pred EeecCCCc--ccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCE
Q psy2398 60 HLISPKFN--TQVPDYPMPDNYP-VYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDF 135 (433)
Q Consensus 60 ~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~ 135 (433)
........ ..+.......... ....+..+.+.+.+.+... ++ .++++++|+.++.+++.|.|++.++.++.+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~--~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~ 160 (395)
T PRK05732 83 HVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGV--TLHCPARVANVERTQGSVRVTLDDGETLTGRL 160 (395)
T ss_pred EEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCc--EEEcCCEEEEEEEcCCeEEEEECCCCEEEeCE
Confidence 11000000 0000000000000 1234566677777666553 45 58889999999887888999998888899999
Q ss_pred EEEccCCCCC
Q psy2398 136 IAVCNGAQRV 145 (433)
Q Consensus 136 vIvAtG~~s~ 145 (433)
||.|+|.+|.
T Consensus 161 vI~AdG~~S~ 170 (395)
T PRK05732 161 LVAADGSHSA 170 (395)
T ss_pred EEEecCCChh
Confidence 9999999763
No 139
>PLN02697 lycopene epsilon cyclase
Probab=99.16 E-value=3.1e-10 Score=111.61 Aligned_cols=129 Identities=19% Similarity=0.264 Sum_probs=85.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC---CcccCCCCCC-------ccccceEeecCCCcccCCCCC-
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG---GVWNSQASCG-------RVYPSLHLISPKFNTQVPDYP- 74 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G---g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~- 74 (433)
..+||+||||||+|+++|..|++.|++|+++|+..... |.|...-... ..|+..... +++..
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~-------~~~~~~ 179 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVY-------LDDDKP 179 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEE-------ecCCce
Confidence 45899999999999999999999999999999865432 3443210000 001111111 11100
Q ss_pred CCCCCC-CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEE-EEEccCcEEEeCEEEEccCCCC
Q psy2398 75 MPDNYP-VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 75 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~-v~~~~g~~~~~d~vIvAtG~~s 144 (433)
.....+ ....+..+.+.+.+.+...++ .+ ++++|+.+..+++.+. +++.++.++.++.||+|+|.+|
T Consensus 180 ~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV--~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 180 IMIGRAYGRVSRTLLHEELLRRCVESGV--SY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred eeccCcccEEcHHHHHHHHHHHHHhcCC--EE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 000111 235678888999888887777 34 6889999987656554 4556777899999999999976
No 140
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.15 E-value=1.1e-09 Score=110.15 Aligned_cols=139 Identities=18% Similarity=0.300 Sum_probs=88.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcc---cCCCC----------------CCccccce-EeecC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW---NSQAS----------------CGRVYPSL-HLISP 64 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~---~~~~~----------------~~~~~~~~-~~~~~ 64 (433)
+..+||+||||||+|+++|..|++.|++|+|||+.+...... ..... .+..+... .....
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 100 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRD 100 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCC
Confidence 456799999999999999999999999999999987542210 00000 00001100 01111
Q ss_pred CCcccCCCCCCC-CCCCC--CCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeEEEEEc--cCc-EEEeCEEE
Q psy2398 65 KFNTQVPDYPMP-DNYPV--YPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELS--NGK-KKKYDFIA 137 (433)
Q Consensus 65 ~~~~~~~~~~~~-~~~~~--~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~v~~~--~g~-~~~~d~vI 137 (433)
.....++..+.. ..++. ...+..+.+++.+.+.+. ++ .++++++|+.++.+++.+.+++. ++. ++.+|+||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v--~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vV 178 (547)
T PRK08132 101 EEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNI--DLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVI 178 (547)
T ss_pred CeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCc--EEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEE
Confidence 111111111100 11111 145677888888888776 44 68999999999988777777654 343 68999999
Q ss_pred EccCCCCC
Q psy2398 138 VCNGAQRV 145 (433)
Q Consensus 138 vAtG~~s~ 145 (433)
.|+|.+|.
T Consensus 179 gADG~~S~ 186 (547)
T PRK08132 179 ACDGARSP 186 (547)
T ss_pred ECCCCCcH
Confidence 99999774
No 141
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.15 E-value=1.2e-10 Score=110.73 Aligned_cols=135 Identities=19% Similarity=0.265 Sum_probs=83.0
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCC--C-----------------CCc--cccceEeecC--
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQA--S-----------------CGR--VYPSLHLISP-- 64 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~--~-----------------~~~--~~~~~~~~~~-- 64 (433)
+||+|||||++|+++|..|+++|++|+|||+.+.....-.-.. + ... ..........
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 6999999999999999999999999999999876421100000 0 000 0000011100
Q ss_pred ---------CCcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc---C--cE
Q psy2398 65 ---------KFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN---G--KK 130 (433)
Q Consensus 65 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~---g--~~ 130 (433)
.....+. ............+..+.+.|.+.++..++ .++++++++.++.+.+++.+.+.+ + .+
T Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~gv--~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~ 158 (356)
T PF01494_consen 82 DSRIWVENPQIREDME-IDTKGPYGHVIDRPELDRALREEAEERGV--DIRFGTRVVSIEQDDDGVTVVVRDGEDGEEET 158 (356)
T ss_dssp TSEEEEEEEEEEEECH-STSGSSCEEEEEHHHHHHHHHHHHHHHTE--EEEESEEEEEEEEETTEEEEEEEETCTCEEEE
T ss_pred Cccceeeecccceeee-ccccCCcchhhhHHHHHHhhhhhhhhhhh--hheeeeecccccccccccccccccccCCceeE
Confidence 0000010 00011111234578899999999988886 699999999999887776655543 2 26
Q ss_pred EEeCEEEEccCCCCC
Q psy2398 131 KKYDFIAVCNGAQRV 145 (433)
Q Consensus 131 ~~~d~vIvAtG~~s~ 145 (433)
+++|.||.|+|.+|.
T Consensus 159 i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 159 IEADLVVGADGAHSK 173 (356)
T ss_dssp EEESEEEE-SGTT-H
T ss_pred EEEeeeecccCcccc
Confidence 899999999999874
No 142
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.13 E-value=7.8e-10 Score=105.58 Aligned_cols=126 Identities=19% Similarity=0.305 Sum_probs=88.1
Q ss_pred cEEEECCChHHHHHHHHH--HhcCCCeEEEccCCCC--CC--cccCCCCC--------CccccceEeecCCCcccCCCCC
Q psy2398 9 KLCIIGGGPLGIGLGREL--SEGNINYDLYEMESDL--GG--VWNSQASC--------GRVYPSLHLISPKFNTQVPDYP 74 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l--~~~g~~v~v~e~~~~~--Gg--~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 74 (433)
||+|||||++|+++|.+| ++.|.+|+++|+.... .. +|...... ...|+......+......
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~---- 76 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRIL---- 76 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEE----
Confidence 899999999999999999 7779999999987765 21 33332211 011222222211111111
Q ss_pred CCCCCC-CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCC
Q psy2398 75 MPDNYP-VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ 143 (433)
Q Consensus 75 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~ 143 (433)
...+ ....+..+.+++.+.+...+. +.++++|++|+.+++.+.+++.+|.+++++.||.|+|..
T Consensus 77 --~~~~Y~~i~~~~f~~~l~~~~~~~~~---~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 77 --IDYPYCMIDRADFYEFLLERAAAGGV---IRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred --cccceEEEEHHHHHHHHHHHhhhCCe---EEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcc
Confidence 0111 245688899998888884443 778999999999888899999999899999999999963
No 143
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.13 E-value=7e-10 Score=107.00 Aligned_cols=137 Identities=23% Similarity=0.250 Sum_probs=81.6
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC---C---C-cccCCC--------------CCCccccceEeecCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL---G---G-VWNSQA--------------SCGRVYPSLHLISPKF 66 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~---G---g-~~~~~~--------------~~~~~~~~~~~~~~~~ 66 (433)
+||+||||||+|+++|..|++.|++|+|+|+.+.. + . ....+. ..+.....+.+.....
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 79999999999999999999999999999998741 1 1 100000 0011111222111111
Q ss_pred ccc--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEE-eCCeEEEEE-ccCc--EEEeCEEEEcc
Q psy2398 67 NTQ--VPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ-YEDIWEVEL-SNGK--KKKYDFIAVCN 140 (433)
Q Consensus 67 ~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~-~~~~~~v~~-~~g~--~~~~d~vIvAt 140 (433)
... +....... .....++..+.+.+.+.+...++ .++++++++.++. +++...|++ .+|+ ++++|.||.|+
T Consensus 83 ~~~~~~~~~~~~~-~~~~~~~~~l~~~Ll~~a~~~gv--~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgAD 159 (392)
T PRK08243 83 RHRIDLTELTGGR-AVTVYGQTEVTRDLMAARLAAGG--PIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCD 159 (392)
T ss_pred EEEeccccccCCc-eEEEeCcHHHHHHHHHHHHhCCC--eEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECC
Confidence 111 11100000 00112345555566555666666 5899999999876 455556666 3553 58999999999
Q ss_pred CCCCCCC
Q psy2398 141 GAQRVAR 147 (433)
Q Consensus 141 G~~s~p~ 147 (433)
|.+|.-+
T Consensus 160 G~~S~vR 166 (392)
T PRK08243 160 GFHGVSR 166 (392)
T ss_pred CCCCchh
Confidence 9987544
No 144
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.13 E-value=5.4e-10 Score=109.19 Aligned_cols=138 Identities=13% Similarity=0.245 Sum_probs=87.3
Q ss_pred CcEEEECCChHHHHHHHHHHh----cCCCeEEEccCCCCC----------CcccCCC----C------------------
Q psy2398 8 IKLCIIGGGPLGIGLGRELSE----GNINYDLYEMESDLG----------GVWNSQA----S------------------ 51 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~----~g~~v~v~e~~~~~G----------g~~~~~~----~------------------ 51 (433)
+||+||||||+|+++|..|++ .|++|+|||+.+... |.+.... +
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 589999999999999999998 799999999943211 1000000 0
Q ss_pred CCccccceEeecCCC--cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcC---CCcceEeCcEEEEEEEe-------CC
Q psy2398 52 CGRVYPSLHLISPKF--NTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFD---VYNHSIFNTEVINLEQY-------ED 119 (433)
Q Consensus 52 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~i~~~~~V~~v~~~-------~~ 119 (433)
....+..+....... ...|+............++..+.+.+.+.+...+ + .++++++|+.++.. +.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v--~i~~~~~v~~i~~~~~~~~~~~~ 158 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNV--KILNPARLISVTIPSKYPNDNSN 158 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCe--EEecCCeeEEEEeccccccCCCC
Confidence 001111121111111 1122211100111112457778888888777664 4 58899999999752 45
Q ss_pred eEEEEEccCcEEEeCEEEEccCCCCCCC
Q psy2398 120 IWEVELSNGKKKKYDFIAVCNGAQRVAR 147 (433)
Q Consensus 120 ~~~v~~~~g~~~~~d~vIvAtG~~s~p~ 147 (433)
.++|++.+|+++++|.||.|+|.+|.-+
T Consensus 159 ~v~v~~~~g~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 159 WVHITLSDGQVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred ceEEEEcCCCEEEeeEEEEecCCCChhH
Confidence 6888888898999999999999987544
No 145
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.12 E-value=1.3e-09 Score=104.91 Aligned_cols=134 Identities=19% Similarity=0.274 Sum_probs=82.0
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCC----------C---ccccceEeecCCCcc-cCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASC----------G---RVYPSLHLISPKFNT-QVPDY 73 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~----------~---~~~~~~~~~~~~~~~-~~~~~ 73 (433)
+||+||||||+|++||..|++.|++|+++|+....+..|....+. . ..+......++.... .+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~ 80 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRT 80 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccC
Confidence 589999999999999999999999999999976543222211110 0 001122222222110 11110
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEE---eCCeEEEEEc--c-----C--cEEEeCEEEEccC
Q psy2398 74 PMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ---YEDIWEVELS--N-----G--KKKKYDFIAVCNG 141 (433)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~---~~~~~~v~~~--~-----g--~~~~~d~vIvAtG 141 (433)
.....+.....+..+.+++.+.+.+.|+ .++.+ ++..+.. .++.+.|+.. + + .+++++.||.|+|
T Consensus 81 ~~~~~~~~~v~R~~~d~~L~~~a~~~G~--~v~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG 157 (398)
T TIGR02028 81 LKEHEYIGMLRREVLDSFLRRRAADAGA--TLING-LVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADG 157 (398)
T ss_pred CCCCCceeeeeHHHHHHHHHHHHHHCCc--EEEcc-eEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCC
Confidence 0011111236789999999999998887 46555 4666643 2455666532 1 2 3689999999999
Q ss_pred CCC
Q psy2398 142 AQR 144 (433)
Q Consensus 142 ~~s 144 (433)
.+|
T Consensus 158 ~~S 160 (398)
T TIGR02028 158 ANS 160 (398)
T ss_pred cch
Confidence 965
No 146
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.11 E-value=8.4e-10 Score=106.73 Aligned_cols=138 Identities=14% Similarity=0.147 Sum_probs=86.0
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC---CCcccCCCC----------------CCccccceEeecCCCc-
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL---GGVWNSQAS----------------CGRVYPSLHLISPKFN- 67 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~---Gg~~~~~~~----------------~~~~~~~~~~~~~~~~- 67 (433)
.+|+|||||++|+++|..|++.|++|+|+|+.+.. |........ .+.....+........
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 68999999999999999999999999999998753 211111110 0000011111110000
Q ss_pred --ccCC--CCCCCCCCCC--CCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeEEEEEc---cCcEEEeCEEE
Q psy2398 68 --TQVP--DYPMPDNYPV--YPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELS---NGKKKKYDFIA 137 (433)
Q Consensus 68 --~~~~--~~~~~~~~~~--~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~v~~~---~g~~~~~d~vI 137 (433)
.... +.....+... ...+..+.+.|.+.+... ++ .++++++|+.++.+++.+.+++. +++++.+|.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i--~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvI 160 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGI--EIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLI 160 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCc--EEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEE
Confidence 0000 0000000111 246778888888777653 45 58999999999887777887763 34578999999
Q ss_pred EccCCCCCCC
Q psy2398 138 VCNGAQRVAR 147 (433)
Q Consensus 138 vAtG~~s~p~ 147 (433)
.|+|.+|.-+
T Consensus 161 gADG~~S~vR 170 (400)
T PRK06475 161 ACDGVWSMLR 170 (400)
T ss_pred ECCCccHhHH
Confidence 9999987543
No 147
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.11 E-value=7.7e-10 Score=106.48 Aligned_cols=134 Identities=20% Similarity=0.285 Sum_probs=87.1
Q ss_pred EEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCC------ccccceEee---cCCC----cccCC------
Q psy2398 11 CIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCG------RVYPSLHLI---SPKF----NTQVP------ 71 (433)
Q Consensus 11 ~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~------~~~~~~~~~---~~~~----~~~~~------ 71 (433)
+|||||++|++||..|++.|.+|+|+|+.+.+|+.+....... ...+.+... .+.. +..|+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 6999999999999999999999999999998876543221100 000000000 0000 00000
Q ss_pred ---CCCC----CCCCCCCC---CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccC
Q psy2398 72 ---DYPM----PDNYPVYP---NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNG 141 (433)
Q Consensus 72 ---~~~~----~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG 141 (433)
.... ......|+ ....+.+.+.+.+++.++ .++++++|+.++.+++.|.+++. +.++.+|.||+|+|
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv--~i~~~~~V~~i~~~~~~~~v~~~-~~~i~ad~VIlAtG 157 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGV--EILTNSKVKSIKKDDNGFGVETS-GGEYEADKVILATG 157 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEEecCCeEEEEEC-CcEEEcCEEEECCC
Confidence 0000 00111122 357788888888888887 58999999999887778888874 45789999999999
Q ss_pred CCCCCC
Q psy2398 142 AQRVAR 147 (433)
Q Consensus 142 ~~s~p~ 147 (433)
.++.|.
T Consensus 158 ~~s~p~ 163 (400)
T TIGR00275 158 GLSYPQ 163 (400)
T ss_pred CcccCC
Confidence 977553
No 148
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.11 E-value=1.2e-09 Score=106.26 Aligned_cols=133 Identities=17% Similarity=0.284 Sum_probs=82.5
Q ss_pred CcEEEECCChHHHHHHHHHHhcC-CCeEEEccCCCCCCc---ccCCCC------C----------C----ccccceEe--
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGN-INYDLYEMESDLGGV---WNSQAS------C----------G----RVYPSLHL-- 61 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g-~~v~v~e~~~~~Gg~---~~~~~~------~----------~----~~~~~~~~-- 61 (433)
.+|+|||||++||++|..|+++| ++|+|||+.+.++.. ...... . . ..+.....
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence 37999999999999999999998 699999998775321 111100 0 0 00000000
Q ss_pred ecCCCcccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEcc
Q psy2398 62 ISPKFNTQVPDYPMPDNYP-VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCN 140 (433)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAt 140 (433)
..... ..+.......... ....+.++.+.+.+.+.. ..++++++|+.++.++++|++++.++.++.+|.||+|+
T Consensus 81 ~~~~~-~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~----~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgAD 155 (414)
T TIGR03219 81 RNGSD-ASYLGATIAPGVGQSSVHRADFLDALLKHLPE----GIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGAD 155 (414)
T ss_pred EecCc-cceeeeeccccCCcccCCHHHHHHHHHHhCCC----ceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECC
Confidence 00000 0000000000010 124466666666554422 24789999999998888899999998889999999999
Q ss_pred CCCCC
Q psy2398 141 GAQRV 145 (433)
Q Consensus 141 G~~s~ 145 (433)
|.+|.
T Consensus 156 G~~S~ 160 (414)
T TIGR03219 156 GIKSA 160 (414)
T ss_pred CccHH
Confidence 99875
No 149
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.09 E-value=1.5e-09 Score=105.68 Aligned_cols=138 Identities=20% Similarity=0.303 Sum_probs=83.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC----CCCcccCCC------CCC---ccccceEeecCCCc-ccC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD----LGGVWNSQA------SCG---RVYPSLHLISPKFN-TQV 70 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~----~Gg~~~~~~------~~~---~~~~~~~~~~~~~~-~~~ 70 (433)
..++||+||||||+|+++|..|++.|++|+++|+... .||...... +.. .....+.+.++... ..+
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~ 116 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDI 116 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEe
Confidence 3468999999999999999999999999999998753 232211100 000 00111122222111 111
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe---CCeEEEEEcc---------CcEEEeCEEEE
Q psy2398 71 PDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY---EDIWEVELSN---------GKKKKYDFIAV 138 (433)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~---~~~~~v~~~~---------g~~~~~d~vIv 138 (433)
.....+..+.....+..+.++|.+.+.+.|. .++.. +++.++.. ++.+.|++.+ +.++.+|.||.
T Consensus 117 ~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga--~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIg 193 (450)
T PLN00093 117 GKTLKPHEYIGMVRREVLDSFLRERAQSNGA--TLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIG 193 (450)
T ss_pred cccCCCCCeEEEecHHHHHHHHHHHHHHCCC--EEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEE
Confidence 1100011111126789999999999998887 35544 57777642 3456676532 24689999999
Q ss_pred ccCCCCC
Q psy2398 139 CNGAQRV 145 (433)
Q Consensus 139 AtG~~s~ 145 (433)
|+|.+|.
T Consensus 194 ADG~~S~ 200 (450)
T PLN00093 194 ADGANSR 200 (450)
T ss_pred cCCcchH
Confidence 9998663
No 150
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.07 E-value=1.5e-09 Score=104.42 Aligned_cols=136 Identities=21% Similarity=0.304 Sum_probs=80.0
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC------CC-cccCCC-C-------------CCccccceEeecCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL------GG-VWNSQA-S-------------CGRVYPSLHLISPKF 66 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~------Gg-~~~~~~-~-------------~~~~~~~~~~~~~~~ 66 (433)
+||+|||||++|+++|..|++.|++|+|||+.+.. |. ....+. . .+.....+.......
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ 82 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence 79999999999999999999999999999998741 11 100000 0 011111111111111
Q ss_pred cc--cCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEE-eCCeEEEEEc-cCc--EEEeCEEEEc
Q psy2398 67 NT--QVPDYPMPDNYPV-YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ-YEDIWEVELS-NGK--KKKYDFIAVC 139 (433)
Q Consensus 67 ~~--~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~-~~~~~~v~~~-~g~--~~~~d~vIvA 139 (433)
.. .+.... ..... ...+..+.+.+.+.+...+. .++++++++.+.. +.....|++. +|+ ++++|.||.|
T Consensus 83 ~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~g~--~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGA 158 (390)
T TIGR02360 83 RFRIDLKALT--GGKTVMVYGQTEVTRDLMEAREAAGL--TTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGC 158 (390)
T ss_pred EEEEeccccC--CCceEEEeCHHHHHHHHHHHHHhcCC--eEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEEC
Confidence 11 111110 00000 11344556666666666665 5788888777754 3445566664 664 5899999999
Q ss_pred cCCCCCCC
Q psy2398 140 NGAQRVAR 147 (433)
Q Consensus 140 tG~~s~p~ 147 (433)
+|.+|.-+
T Consensus 159 DG~~S~VR 166 (390)
T TIGR02360 159 DGFHGVSR 166 (390)
T ss_pred CCCchhhH
Confidence 99988543
No 151
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.06 E-value=5.3e-10 Score=106.46 Aligned_cols=60 Identities=20% Similarity=0.205 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEE-EEEccCcEEEeCEEEEccCCCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELSNGKKKKYDFIAVCNGAQRVA 146 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~-v~~~~g~~~~~d~vIvAtG~~s~p 146 (433)
....+.+.+.+.+++.|+ .++.+++|++++.+++.|+ |.+.+|+ +.+|.||+|+|.++..
T Consensus 145 ~~~~l~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 145 DPRRLIQALAAEAQRAGV--EIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp EHHHHHHHHHHHHHHTT---EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred cccchhhhhHHHHHHhhh--hccccccccchhhcccccccccccccc-cccceeEeccccccee
Confidence 468889999999999888 6999999999999999998 9999987 9999999999996533
No 152
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.06 E-value=1e-09 Score=91.77 Aligned_cols=128 Identities=13% Similarity=0.237 Sum_probs=83.1
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC-CcccCCCCCCccccceEeecCCCcccCCCCCCCC--CC--CCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG-GVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPD--NY--PVY 82 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~ 82 (433)
.||+|+||||+||+||++|++.|++|+|||++-.+| |.|.-. .+++.+....+.... +.++..+. .. ...
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GG----mlf~~iVv~~~a~~i-L~e~gI~ye~~e~g~~v 105 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGG----MLFNKIVVREEADEI-LDEFGIRYEEEEDGYYV 105 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccc----cccceeeecchHHHH-HHHhCCcceecCCceEE
Confidence 699999999999999999999999999999988765 456544 345555555443211 11111111 11 112
Q ss_pred CCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC--------eEEEEEc-----cCcEEEeCEEEEccCC
Q psy2398 83 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--------IWEVELS-----NGKKKKYDFIAVCNGA 142 (433)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~--------~~~v~~~-----~g~~~~~d~vIvAtG~ 142 (433)
....++..-+...+-..+. +|+..+.|+.+-..++ .|+.... |-.++++++||-|||+
T Consensus 106 ~ds~e~~skl~~~a~~aGa--ki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGH 176 (262)
T COG1635 106 ADSAEFASKLAARALDAGA--KIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGH 176 (262)
T ss_pred ecHHHHHHHHHHHHHhcCc--eeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCC
Confidence 3345566666555656665 6787888888876533 1332222 2235899999999998
No 153
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.06 E-value=3.9e-09 Score=98.12 Aligned_cols=42 Identities=31% Similarity=0.444 Sum_probs=39.1
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
.+++|||||++|++||+.|++.|++|.++||.+.+||.....
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~ 166 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKL 166 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhh
Confidence 689999999999999999999999999999999999976543
No 154
>PRK06996 hypothetical protein; Provisional
Probab=99.05 E-value=3.6e-09 Score=102.24 Aligned_cols=132 Identities=15% Similarity=0.232 Sum_probs=87.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcC----CCeEEEccCCCCC---------------------CcccCCCCCCccccce
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGN----INYDLYEMESDLG---------------------GVWNSQASCGRVYPSL 59 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g----~~v~v~e~~~~~G---------------------g~~~~~~~~~~~~~~~ 59 (433)
+..+||+||||||+|+++|..|++.| ++|+++|+.+... |.|... ...+...
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~---~~~~~~~ 85 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPAD---ATPIEHI 85 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhc---CCcccEE
Confidence 45689999999999999999999987 4699999975321 111110 0111111
Q ss_pred EeecCC----CcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC---cEEE
Q psy2398 60 HLISPK----FNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG---KKKK 132 (433)
Q Consensus 60 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g---~~~~ 132 (433)
...... ......+...+. ......+..+.+.|.+.+...++ .+.++++++.++.+++.+++++.++ ++++
T Consensus 86 ~~~~~~~~g~~~~~~~~~~~~~-~g~~v~r~~l~~~L~~~~~~~g~--~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~ 162 (398)
T PRK06996 86 HVSQRGHFGRTLIDRDDHDVPA-LGYVVRYGSLVAALARAVRGTPV--RWLTSTTAHAPAQDADGVTLALGTPQGARTLR 162 (398)
T ss_pred EEecCCCCceEEecccccCCCc-CEEEEEhHHHHHHHHHHHHhCCC--EEEcCCeeeeeeecCCeEEEEECCCCcceEEe
Confidence 111100 011111111111 01124578888999888888776 5888999999988888899988754 5799
Q ss_pred eCEEEEccCC
Q psy2398 133 YDFIAVCNGA 142 (433)
Q Consensus 133 ~d~vIvAtG~ 142 (433)
+|.||.|+|.
T Consensus 163 a~lvIgADG~ 172 (398)
T PRK06996 163 ARIAVQAEGG 172 (398)
T ss_pred eeEEEECCCC
Confidence 9999999996
No 155
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.03 E-value=9.6e-10 Score=103.90 Aligned_cols=138 Identities=23% Similarity=0.276 Sum_probs=89.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcC--CCeEEEccCCCCCCcccCCCC---CCcc-ccce---------------------
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGN--INYDLYEMESDLGGVWNSQAS---CGRV-YPSL--------------------- 59 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g--~~v~v~e~~~~~Gg~~~~~~~---~~~~-~~~~--------------------- 59 (433)
++||+|||||+.|+++|..|++.+ ++|+|+||.+.+|..-..++. ++.. |+.-
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq~ 82 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQL 82 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999998 999999999887643322221 0000 0000
Q ss_pred ---EeecCCCcccCCCC---------------CCC-----------CCCC---------------CCCCHHHHHHHHHHH
Q psy2398 60 ---HLISPKFNTQVPDY---------------PMP-----------DNYP---------------VYPNHSMMLDYLRSY 95 (433)
Q Consensus 60 ---~~~~~~~~~~~~~~---------------~~~-----------~~~~---------------~~~~~~~~~~~l~~~ 95 (433)
..+.++....+.+. +.+ .+.| ......++...+...
T Consensus 83 ~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e~ 162 (429)
T COG0579 83 GIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAEE 162 (429)
T ss_pred CCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHHH
Confidence 00000000000000 000 0001 122345566666667
Q ss_pred HHHcCCCcceEeCcEEEEEEEeCC-eEEEEEccCcE-EEeCEEEEccCCCCCC
Q psy2398 96 AKKFDVYNHSIFNTEVINLEQYED-IWEVELSNGKK-KKYDFIAVCNGAQRVA 146 (433)
Q Consensus 96 ~~~~~~~~~i~~~~~V~~v~~~~~-~~~v~~~~g~~-~~~d~vIvAtG~~s~p 146 (433)
++..|. .++++++|+.+++.++ .+.+.+.+|++ ++++.||+|.|.++.+
T Consensus 163 a~~~g~--~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 163 AQANGV--ELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADP 213 (429)
T ss_pred HHHcCC--EEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHH
Confidence 777777 6999999999999866 67888888866 9999999999998654
No 156
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.02 E-value=5.5e-09 Score=75.96 Aligned_cols=80 Identities=31% Similarity=0.353 Sum_probs=66.7
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHHHH
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMM 88 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (433)
+|+|||||+.|+.+|..|++.|.+|+++++.+.+. ..-..++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~--------------------------------------~~~~~~~ 42 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL--------------------------------------PGFDPDA 42 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS--------------------------------------TTSSHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh--------------------------------------hhcCHHH
Confidence 58999999999999999999999999999987651 0113667
Q ss_pred HHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC
Q psy2398 89 LDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG 128 (433)
Q Consensus 89 ~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g 128 (433)
.+++.+..++.++ ++++++.+.+++.++++++|+++||
T Consensus 43 ~~~~~~~l~~~gV--~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 43 AKILEEYLRKRGV--EVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp HHHHHHHHHHTTE--EEEESEEEEEEEEETTSEEEEEETS
T ss_pred HHHHHHHHHHCCC--EEEeCCEEEEEEEeCCEEEEEEecC
Confidence 7888888888888 6999999999999865566887765
No 157
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.00 E-value=8.2e-09 Score=104.83 Aligned_cols=143 Identities=21% Similarity=0.300 Sum_probs=85.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhc-CCCeEEEccCCCC---CCcccCCCC----------------CCccccceEeecC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEG-NINYDLYEMESDL---GGVWNSQAS----------------CGRVYPSLHLISP 64 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~-g~~v~v~e~~~~~---Gg~~~~~~~----------------~~~~~~~~~~~~~ 64 (433)
...+||+||||||+||++|..|++. |++|+|||+.+.. |........ .+..........+
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~ 109 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKP 109 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcC
Confidence 3468999999999999999999995 9999999988642 110000000 0000011110000
Q ss_pred -----CCcc---cCCCCCCC-CCCC-CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC---CeEEEEEc-----
Q psy2398 65 -----KFNT---QVPDYPMP-DNYP-VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE---DIWEVELS----- 126 (433)
Q Consensus 65 -----~~~~---~~~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~---~~~~v~~~----- 126 (433)
..+. .+.+.... ..++ ...++..+.+.+.+.+.+.+..-.++++++++.++.++ ..+++++.
T Consensus 110 ~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~ 189 (634)
T PRK08294 110 DPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGE 189 (634)
T ss_pred CCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCC
Confidence 0000 00111100 0111 12456678888888887766432478899999998763 33667664
Q ss_pred -cC--cEEEeCEEEEccCCCCCCC
Q psy2398 127 -NG--KKKKYDFIAVCNGAQRVAR 147 (433)
Q Consensus 127 -~g--~~~~~d~vIvAtG~~s~p~ 147 (433)
+| +++++|+||.|.|.+|.-+
T Consensus 190 ~~g~~~tv~A~~lVGaDGa~S~VR 213 (634)
T PRK08294 190 HEGEEETVRAKYVVGCDGARSRVR 213 (634)
T ss_pred CCCceEEEEeCEEEECCCCchHHH
Confidence 24 4789999999999987544
No 158
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.99 E-value=1.5e-08 Score=98.52 Aligned_cols=58 Identities=14% Similarity=0.212 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC-----cEEEeCEEEEccCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-----KKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g-----~~~~~d~vIvAtG~~s~ 145 (433)
..+...+...++..|+ .+..+++|++++.+++.|.+.+.++ .++++|.||+|+|.++.
T Consensus 197 ~~~~~~l~~~a~~~G~--~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 197 HKFTTGLAAACARLGV--QFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred HHHHHHHHHHHHhCCC--EEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence 4555666677777787 5888999999988777787765443 26899999999999753
No 159
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.99 E-value=1.1e-08 Score=102.62 Aligned_cols=137 Identities=15% Similarity=0.214 Sum_probs=84.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC-C-C-Cccc----CCCC-----------------CCccccceEe
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD-L-G-GVWN----SQAS-----------------CGRVYPSLHL 61 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~-~-G-g~~~----~~~~-----------------~~~~~~~~~~ 61 (433)
++.+|+|||||++||++|..|++.|++|+|||+.+. . + |.+. .... ...+......
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i 159 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI 159 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence 458999999999999999999999999999999752 1 1 1110 0000 0000000000
Q ss_pred ----ec--CCCcccCCCCCC-CC-CCC--CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEE
Q psy2398 62 ----IS--PKFNTQVPDYPM-PD-NYP--VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKK 131 (433)
Q Consensus 62 ----~~--~~~~~~~~~~~~-~~-~~~--~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~ 131 (433)
.. ......++.... .. ..+ ....+.++.+.|.+ ..+.. .++++++|+.++.+++.+++++.++.++
T Consensus 160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~---alg~~-~i~~g~~V~~I~~~~d~VtV~~~dG~ti 235 (668)
T PLN02927 160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILAR---AVGED-VIRNESNVVDFEDSGDKVTVVLENGQRY 235 (668)
T ss_pred eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHh---hCCCC-EEEcCCEEEEEEEeCCEEEEEECCCCEE
Confidence 00 000111111110 00 001 12356667766643 33332 4678999999998888899999998889
Q ss_pred EeCEEEEccCCCCCC
Q psy2398 132 KYDFIAVCNGAQRVA 146 (433)
Q Consensus 132 ~~d~vIvAtG~~s~p 146 (433)
.+|.||.|.|.+|.-
T Consensus 236 ~aDlVVGADG~~S~v 250 (668)
T PLN02927 236 EGDLLVGADGIWSKV 250 (668)
T ss_pred EcCEEEECCCCCcHH
Confidence 999999999998743
No 160
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.97 E-value=1.8e-09 Score=104.18 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
...+.+.+.+.+++.|+ .++++++|..++.+++.|.|.+.++ ++.+|.||+|+|.++
T Consensus 148 ~~~l~~aL~~~~~~~Gv--~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGG--EIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCC--EEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch
Confidence 56677777777777777 5888999999988777788888776 699999999999975
No 161
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.95 E-value=9.7e-09 Score=98.79 Aligned_cols=59 Identities=20% Similarity=0.187 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~ 145 (433)
....+.+.+.+.++..++ .+..+++|++++.+++.+.|.+.++ ++.+|.||+|+|.++.
T Consensus 143 ~p~~~~~~l~~~~~~~g~--~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~ 201 (380)
T TIGR01377 143 YAEKALRALQELAEAHGA--TVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTS 201 (380)
T ss_pred cHHHHHHHHHHHHHHcCC--EEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchH
Confidence 456677777777887787 5888999999998777888888766 6899999999998643
No 162
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.95 E-value=1.1e-08 Score=98.12 Aligned_cols=63 Identities=19% Similarity=0.194 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
....+...+.+.+.+.++ .++++++|+.++.+++.|.|+++++ ++.+|.||+|+|.++....+
T Consensus 147 ~p~~~~~~~~~~~~~~gv--~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l~~ 209 (376)
T PRK11259 147 RPELAIKAHLRLAREAGA--ELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVKDLLP 209 (376)
T ss_pred cHHHHHHHHHHHHHHCCC--EEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchhhhcc
Confidence 345566666666667777 5888999999998877888988877 69999999999997544333
No 163
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.95 E-value=1.5e-08 Score=100.65 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc---Cc--EEEeCEEEEccCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN---GK--KKKYDFIAVCNGAQRV 145 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~---g~--~~~~d~vIvAtG~~s~ 145 (433)
..+...+...+.+.|. .+..+++|+.+..+++.|.+++.+ ++ ++.++.||+|+|.++.
T Consensus 155 ~rl~~~l~~~A~~~Ga--~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 155 ARLVVLNARDAAERGA--EILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHHHHHHHHHHHcCC--EEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 4444455556777787 588899999998877778887654 42 5899999999999763
No 164
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.94 E-value=1e-08 Score=97.50 Aligned_cols=127 Identities=17% Similarity=0.236 Sum_probs=76.9
Q ss_pred cEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCC--cccCCCCCCc-----cccc-eEeecCCCcccCCCCCCCCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGG--VWNSQASCGR-----VYPS-LHLISPKFNTQVPDYPMPDN 78 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg--~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (433)
||+|||||++|+++|..|++. |++|+++|+.+.+|| +|......-. .+.. .....+.....+++......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 799999999999999999987 999999999887776 4433211000 0000 00011111111111111111
Q ss_pred CC-CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCC
Q psy2398 79 YP-VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 79 ~~-~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
.+ ....+.++.+++.+.+ +. .++++++|+.++ .+.+++ .+|.++++|.||.|+|..+
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l---~~--~i~~~~~V~~v~--~~~v~l--~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAF---PE--GVILGRKAVGLD--ADGVDL--APGTRINARSVIDCRGFKP 138 (370)
T ss_pred CCceEEEHHHHHHHHHHhh---cc--cEEecCEEEEEe--CCEEEE--CCCCEEEeeEEEECCCCCC
Confidence 11 2334677777765433 33 277788999884 344444 6788899999999999853
No 165
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.94 E-value=7e-09 Score=87.43 Aligned_cols=129 Identities=15% Similarity=0.222 Sum_probs=74.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC-cccCCCCCCccccceEeecCCCcccCCCCCCC--C--CCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG-VWNSQASCGRVYPSLHLISPKFNTQVPDYPMP--D--NYPV 81 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~ 81 (433)
.+||+||||||+||+||+.|++.|++|++||++..+|| .|.-. .+++......+.... +.++..+ + +...
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg----~lf~~iVVq~~a~~i-L~elgi~y~~~~~g~~ 91 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGG----MLFNKIVVQEEADEI-LDELGIPYEEYGDGYY 91 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-C----TT---EEEETTTHHH-HHHHT---EE-SSEEE
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccc----cccchhhhhhhHHHH-HHhCCceeEEeCCeEE
Confidence 47999999999999999999999999999999988775 46543 345656555543211 1111111 0 1112
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC-CeE---EEEEc---------cCcEEEeCEEEEccCC
Q psy2398 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIW---EVELS---------NGKKKKYDFIAVCNGA 142 (433)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~-~~~---~v~~~---------~g~~~~~d~vIvAtG~ 142 (433)
.....++...+...+-+-|. +++-.+.|+.+-..+ +.. .+... |-.+++++.||-|||+
T Consensus 92 v~d~~~~~s~L~s~a~~aGa--kifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGH 163 (230)
T PF01946_consen 92 VADSVEFTSTLASKAIDAGA--KIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGH 163 (230)
T ss_dssp ES-HHHHHHHHHHHHHTTTE--EEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---S
T ss_pred EEcHHHHHHHHHHHHhcCCC--EEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCC
Confidence 23456666766666655666 577788888887654 322 22211 1236899999999998
No 166
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.93 E-value=1.7e-08 Score=99.61 Aligned_cols=136 Identities=14% Similarity=0.161 Sum_probs=79.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC-CCCCc-ccCCCC---CCccccceEeec-------CCCcccCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES-DLGGV-WNSQAS---CGRVYPSLHLIS-------PKFNTQVPDY 73 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~-~~Gg~-~~~~~~---~~~~~~~~~~~~-------~~~~~~~~~~ 73 (433)
..+||+|||||++|+.||..+++.|.+|+++|+.. .+|+. |+.... .+.....+.... ......+...
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 45999999999999999999999999999999874 56542 111100 000000000000 0000001000
Q ss_pred CC---CCCC-C-CCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCeE-EEEEccCcEEEeCEEEEccCCCC
Q psy2398 74 PM---PDNY-P-VYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIW-EVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 74 ~~---~~~~-~-~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~-~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
.. +..+ + ....+..+...+...+... ++ .+ +++.|+.+..+++.. -|.+.+|..+.++.||+|||.++
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV--~I-~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNL--DL-FQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCc--EE-EEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcch
Confidence 00 0000 0 1234555667777766655 55 23 567888887655543 47778888899999999999843
No 167
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.91 E-value=2.6e-08 Score=98.92 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC----cEEEeCEEEEccCCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG----KKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g----~~~~~d~vIvAtG~~s~ 145 (433)
...+...+...+...|. .+..+++|+.+..+++.|.|++.++ .++.++.||+|+|.++.
T Consensus 154 ~~rl~~~l~~~a~~~Ga--~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 154 DARLVVLNALDAAERGA--TILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVT 216 (502)
T ss_pred HHHHHHHHHHHHHHCCC--EEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHH
Confidence 34455555566777787 5888999999988777888887654 25899999999999753
No 168
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.90 E-value=3.2e-08 Score=96.67 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=35.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCC
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLG 43 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~G 43 (433)
++..+||+|||||++|+++|..|++. +.+|+|+||.+.+|
T Consensus 3 ~~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 3 KSESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred CCccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 45678999999999999999999998 89999999944543
No 169
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.89 E-value=3.1e-08 Score=95.38 Aligned_cols=105 Identities=21% Similarity=0.252 Sum_probs=85.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+.+++|||||+.|+..|..+++.|.+|+|+|+.+.+- | .-
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL--------------------------------p------~~ 212 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL--------------------------------P------GE 212 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC--------------------------------C------cC
Confidence 346789999999999999999999999999999988651 0 11
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCc--EEEeCEEEEccCCCCCCCCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNY 151 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~--~~~~d~vIvAtG~~s~p~~p~i 151 (433)
.+++.+.+....++.++ .++++++++.++..++...++++++. ++.+|.|++|+|. .|+...+
T Consensus 213 D~ei~~~~~~~l~~~gv--~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR--~Pn~~~L 277 (454)
T COG1249 213 DPEISKELTKQLEKGGV--KILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGR--KPNTDGL 277 (454)
T ss_pred CHHHHHHHHHHHHhCCe--EEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCC--ccCCCCC
Confidence 36788888888888667 58889999999887665778887765 6889999999998 7777643
No 170
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.88 E-value=7.1e-08 Score=95.20 Aligned_cols=102 Identities=22% Similarity=0.202 Sum_probs=81.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||||++|+.+|..|.+.|.+|+++|+.+.+.. . ..
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~------------------------------------~--~~ 210 (461)
T TIGR01350 169 VPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP------------------------------------G--ED 210 (461)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC------------------------------------C--CC
Confidence 347899999999999999999999999999998764310 0 12
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC--cEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g--~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+.+.+..++.++ +++++++|++++.+++.+.+.+.++ .++.+|.||+|+|. .|+..
T Consensus 211 ~~~~~~~~~~l~~~gi--~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~--~p~~~ 272 (461)
T TIGR01350 211 AEVSKVVAKALKKKGV--KILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGR--KPNTE 272 (461)
T ss_pred HHHHHHHHHHHHHcCC--EEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCC--cccCC
Confidence 4456667777777787 5899999999988777777776666 46999999999998 66655
No 171
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.88 E-value=1.3e-08 Score=104.58 Aligned_cols=59 Identities=20% Similarity=0.357 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~ 145 (433)
....+.+.+.+.+.. ++ .++++++|+.++..++.|.|.++++..+.+|.||+|+|.++.
T Consensus 406 ~p~~l~~aL~~~a~~-Gv--~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 406 CPAELCRALLALAGQ-QL--TIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred CHHHHHHHHHHhccc-Cc--EEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence 345666666666666 66 588899999999888889998888876789999999999754
No 172
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.86 E-value=1.7e-08 Score=98.84 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHHH----cCCCcceEeCcEEEEEEEe-CCeEEEEEccCcEEEeCEEEEccCCCCC
Q psy2398 84 NHSMMLDYLRSYAKK----FDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~----~~~~~~i~~~~~V~~v~~~-~~~~~v~~~~g~~~~~d~vIvAtG~~s~ 145 (433)
....+.+.+.+.+++ .|..-.++++++|+.++.. ++.|.|++.+| ++.+|+||+|+|.++.
T Consensus 209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 345566666666776 6632258899999999987 66799998877 5999999999999864
No 173
>PLN02661 Putative thiazole synthesis
Probab=98.84 E-value=2.1e-08 Score=92.32 Aligned_cols=130 Identities=19% Similarity=0.342 Sum_probs=74.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc-CCCeEEEccCCCCCC-cccCCCCCCccccceEeecC--CCcccCCCCCCCC--CC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG-NINYDLYEMESDLGG-VWNSQASCGRVYPSLHLISP--KFNTQVPDYPMPD--NY 79 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~-g~~v~v~e~~~~~Gg-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~ 79 (433)
..+||+|||||++|+++|..|++. |++|+++|+....|| .|.... .+.......+ ..+..+ ..++.. .+
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~----l~~~~vv~~~a~e~LeEl-GV~fd~~dgy 165 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQ----LFSAMVVRKPAHLFLDEL-GVPYDEQENY 165 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcc----cccccccccHHHHHHHHc-CCCcccCCCe
Confidence 357999999999999999999976 899999999888765 453221 1111111111 000000 111111 11
Q ss_pred CCCCCHHHHHHHHHHHHHH-cCCCcceEeCcEEEEEEEeCCe-------EEEEEcc--C------cEEEeCEEEEccCC
Q psy2398 80 PVYPNHSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDI-------WEVELSN--G------KKKKYDFIAVCNGA 142 (433)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~-~~~~~~i~~~~~V~~v~~~~~~-------~~v~~~~--g------~~~~~d~vIvAtG~ 142 (433)
.......++...+...+.+ .++ +++.++.++.+..+++. |.+...+ + ..+.++.||+|||+
T Consensus 166 ~vv~ha~e~~stLi~ka~~~~gV--kI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh 242 (357)
T PLN02661 166 VVIKHAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGH 242 (357)
T ss_pred eEecchHHHHHHHHHHHHhcCCC--EEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCC
Confidence 1111223444455544433 455 57778888888765443 3222111 1 25899999999996
No 174
>KOG2614|consensus
Probab=98.82 E-value=3.4e-08 Score=90.83 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=33.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL 42 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~ 42 (433)
+.+|+|||||++|+++|..|.++|++|+|+|++..+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 469999999999999999999999999999997765
No 175
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.82 E-value=2.2e-07 Score=92.42 Aligned_cols=137 Identities=15% Similarity=0.189 Sum_probs=81.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCC-----CCC-------------ccccceE-------
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQA-----SCG-------------RVYPSLH------- 60 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~-----~~~-------------~~~~~~~------- 60 (433)
..+||+|||+|.+|++||..+++.|.+|+|+||.+..||.-.... ..+ ..+..+.
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~ 139 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTN 139 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCC
Confidence 357999999999999999999999999999999988776321100 000 0000000
Q ss_pred ---------eecC---CCc----ccCCCCC------CCC-CCC--CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEE
Q psy2398 61 ---------LISP---KFN----TQVPDYP------MPD-NYP--VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLE 115 (433)
Q Consensus 61 ---------~~~~---~~~----~~~~~~~------~~~-~~~--~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~ 115 (433)
-++. .++ ..|.... .+. +.+ .......+.+.+.+.+++.++ .+++++.|+.+.
T Consensus 140 d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv--~i~~~t~v~~l~ 217 (506)
T PRK06481 140 DKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKI--PLFVNADVTKIT 217 (506)
T ss_pred CHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCC--eEEeCCeeEEEE
Confidence 0000 000 0010000 000 000 011234566777777777787 589999999998
Q ss_pred EeCCe---EEEEEccC--cEEEeCEEEEccCCCC
Q psy2398 116 QYEDI---WEVELSNG--KKKKYDFIAVCNGAQR 144 (433)
Q Consensus 116 ~~~~~---~~v~~~~g--~~~~~d~vIvAtG~~s 144 (433)
.+++. +.+...++ .++.++.||+|||.+.
T Consensus 218 ~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~ 251 (506)
T PRK06481 218 EKDGKVTGVKVKINGKETKTISSKAVVVTTGGFG 251 (506)
T ss_pred ecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcc
Confidence 65543 34443443 2588999999999864
No 176
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.82 E-value=1.4e-07 Score=92.45 Aligned_cols=135 Identities=18% Similarity=0.150 Sum_probs=81.7
Q ss_pred cEEEECCChHHHHHHHHHHhcC-CCeEEEccCCCCCCcccCCCC-----CCc-------------cccce------Ee--
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGN-INYDLYEMESDLGGVWNSQAS-----CGR-------------VYPSL------HL-- 61 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g-~~v~v~e~~~~~Gg~~~~~~~-----~~~-------------~~~~~------~~-- 61 (433)
||+|||||.+|++||..++++| .+|+|+||.+..||.-..... .+. .+... ..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 999999998877654221100 000 00000 00
Q ss_pred --------ecC---CCcc-c----CCCC------CCCC-CCC--CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEE
Q psy2398 62 --------ISP---KFNT-Q----VPDY------PMPD-NYP--VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ 116 (433)
Q Consensus 62 --------~~~---~~~~-~----~~~~------~~~~-~~~--~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~ 116 (433)
.+. .++. . +... ..+. ..+ .......+.+.+.+.+++.++ +++++++|+++..
T Consensus 81 ~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv--~i~~~~~v~~l~~ 158 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGI--DTRLNSKVEDLIQ 158 (439)
T ss_pred HHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCC--EEEeCCEeeEeEE
Confidence 000 0000 0 0000 0000 000 112346788888888888888 6999999999987
Q ss_pred e-CC---eEEEEEccCc--EEEeCEEEEccCCCCC
Q psy2398 117 Y-ED---IWEVELSNGK--KKKYDFIAVCNGAQRV 145 (433)
Q Consensus 117 ~-~~---~~~v~~~~g~--~~~~d~vIvAtG~~s~ 145 (433)
+ ++ ++.+...++. .+.++.||+|||.++.
T Consensus 159 ~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 159 DDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred CCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 5 33 2333333443 3678999999999754
No 177
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.81 E-value=6e-07 Score=86.18 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=31.5
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+||+|||+|++|+++|..|++.|.+|+++|+..
T Consensus 3 ~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 3 FDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 899999999999999999999999999999863
No 178
>KOG2820|consensus
Probab=98.80 E-value=4.4e-08 Score=87.28 Aligned_cols=145 Identities=21% Similarity=0.239 Sum_probs=96.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC--C---------------------------cccCCCC---
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG--G---------------------------VWNSQAS--- 51 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G--g---------------------------~~~~~~~--- 51 (433)
+....+|+|||||.-|+++|.+|+++|.++.++|+.+-.- | .|.....
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g 83 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESG 83 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhc
Confidence 3456799999999999999999999999999999866321 1 1111110
Q ss_pred ------CCccccce---------------------EeecCCCcccCC-CCCCCCCCC-------CCCCHHHHHHHHHHHH
Q psy2398 52 ------CGRVYPSL---------------------HLISPKFNTQVP-DYPMPDNYP-------VYPNHSMMLDYLRSYA 96 (433)
Q Consensus 52 ------~~~~~~~~---------------------~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~l~~~~ 96 (433)
....+.+. .+.+...-..|+ ..++++.+. ++....+....++.++
T Consensus 84 ~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~ 163 (399)
T KOG2820|consen 84 VKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKA 163 (399)
T ss_pred eeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHH
Confidence 00000000 000000011233 334444443 3445678888899999
Q ss_pred HHcCCCcceEeCcEEEEEEEe---CCeEEEEEccCcEEEeCEEEEccCCCCCCCCCC
Q psy2398 97 KKFDVYNHSIFNTEVINLEQY---EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN 150 (433)
Q Consensus 97 ~~~~~~~~i~~~~~V~~v~~~---~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~ 150 (433)
.++|+ -++.+.+|..++.. +....|.|.+|..+.++.+|+++|+|-..-+|.
T Consensus 164 ~~~G~--i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 164 RELGV--IFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred HHcCe--EEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCc
Confidence 99998 48889999888864 566788888998899999999999975555554
No 179
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.79 E-value=1.5e-07 Score=92.56 Aligned_cols=135 Identities=17% Similarity=0.164 Sum_probs=77.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCC---------C-------------CCccccce----E
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQA---------S-------------CGRVYPSL----H 60 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~---------~-------------~~~~~~~~----~ 60 (433)
|+||+|||||.+||+||..+++.|.+|+|+||....+.++.... . ...+.+.+ .
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 80 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI 80 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 37999999999999999999999999999999764322111000 0 00000000 0
Q ss_pred eecC---CCc----ccCCCCCC--CCCCCC-----CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEE-EEE
Q psy2398 61 LISP---KFN----TQVPDYPM--PDNYPV-----YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VEL 125 (433)
Q Consensus 61 ~~~~---~~~----~~~~~~~~--~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~-v~~ 125 (433)
.+++ .++ ..|..... ...++. -.....+.+.+.+.+++.++ .+... .++.+..+++.+. +..
T Consensus 81 ~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv--~i~~~-~v~~l~~~~g~v~Gv~~ 157 (466)
T PRK08401 81 SKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGV--NFIRG-FAEELAIKNGKAYGVFL 157 (466)
T ss_pred HHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCC--EEEEe-EeEEEEeeCCEEEEEEE
Confidence 0000 000 01110000 001110 11245678888888888787 35554 7777765555543 333
Q ss_pred ccCcEEEeCEEEEccCCCCC
Q psy2398 126 SNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 126 ~~g~~~~~d~vIvAtG~~s~ 145 (433)
++..+.++.||+|||.++.
T Consensus 158 -~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 158 -DGELLKFDATVIATGGFSG 176 (466)
T ss_pred -CCEEEEeCeEEECCCcCcC
Confidence 5567899999999999754
No 180
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.79 E-value=8.9e-08 Score=94.23 Aligned_cols=62 Identities=21% Similarity=0.242 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
....+.+.+.+.+++.|+ +++.++.|+.++. ++.+.|++.+| ++.+|.||+|||.++....|
T Consensus 181 ~P~~l~~~L~~~a~~~Gv--~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~~l~~ 242 (460)
T TIGR03329 181 QPGLLVRGLRRVALELGV--EIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMASHFP 242 (460)
T ss_pred CHHHHHHHHHHHHHHcCC--EEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEcccccccccCh
Confidence 345666677777777887 5888999999975 55678888777 58999999999997644333
No 181
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.79 E-value=1e-07 Score=94.11 Aligned_cols=137 Identities=14% Similarity=0.200 Sum_probs=79.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC--CCCcccCCC--------CCC---------ccccceE----e-
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD--LGGVWNSQA--------SCG---------RVYPSLH----L- 61 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~--~Gg~~~~~~--------~~~---------~~~~~~~----~- 61 (433)
..+||+|||+|++|++||..+++.|.+|+|+||.+. .||.-.... ... ..+..+. .
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR 82 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence 458999999999999999999999999999999874 454321110 000 0000000 0
Q ss_pred -----------ecC---CCcc----cCCCCC---C--CCCCCCC-CCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe
Q psy2398 62 -----------ISP---KFNT----QVPDYP---M--PDNYPVY-PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY 117 (433)
Q Consensus 62 -----------~~~---~~~~----~~~~~~---~--~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~ 117 (433)
++. .++. .|.... . +.....+ .....+...+.+.+++.++ +++++++|+++..+
T Consensus 83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv--~i~~~t~v~~l~~~ 160 (466)
T PRK08274 83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGV--EIRYDAPVTALELD 160 (466)
T ss_pred CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCC--EEEcCCEEEEEEec
Confidence 000 0000 000000 0 0000000 0135677777778888887 68999999999876
Q ss_pred CCeEE-EEEc--cC--cEEEeCEEEEccCCCC
Q psy2398 118 EDIWE-VELS--NG--KKKKYDFIAVCNGAQR 144 (433)
Q Consensus 118 ~~~~~-v~~~--~g--~~~~~d~vIvAtG~~s 144 (433)
++.+. +... ++ ..+.++.||+|||.++
T Consensus 161 ~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 161 DGRFVGARAGSAAGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred CCeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence 55432 3332 22 3578999999999864
No 182
>PLN02985 squalene monooxygenase
Probab=98.78 E-value=1.8e-07 Score=92.76 Aligned_cols=139 Identities=16% Similarity=0.161 Sum_probs=78.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC----CcccCCC---------------C-CCccccceEeec-
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG----GVWNSQA---------------S-CGRVYPSLHLIS- 63 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G----g~~~~~~---------------~-~~~~~~~~~~~~- 63 (433)
+..+||+|||||++|+++|..|++.|.+|+|+|+..... |.+...+ . ............
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~ 120 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKD 120 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEEC
Confidence 346899999999999999999999999999999875311 1111100 0 000111111111
Q ss_pred CCC-cccCCCCC--CCCCCC-CCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCCe---EEEEEccCcE--EEe
Q psy2398 64 PKF-NTQVPDYP--MPDNYP-VYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDI---WEVELSNGKK--KKY 133 (433)
Q Consensus 64 ~~~-~~~~~~~~--~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~~---~~v~~~~g~~--~~~ 133 (433)
... ...|+... .+.... ....+.++.+.+.+.+... ++ .+..+ +++.+..+++. .++...+|++ +.+
T Consensus 121 g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V--~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~A 197 (514)
T PLN02985 121 GKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNV--RLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTALA 197 (514)
T ss_pred CEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCe--EEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEEC
Confidence 111 11121100 000001 1345678888888888765 34 35444 56666554432 3333345543 568
Q ss_pred CEEEEccCCCCCC
Q psy2398 134 DFIAVCNGAQRVA 146 (433)
Q Consensus 134 d~vIvAtG~~s~p 146 (433)
|.||.|+|.+|.-
T Consensus 198 dLVVgADG~~S~v 210 (514)
T PLN02985 198 PLTVVCDGCYSNL 210 (514)
T ss_pred CEEEECCCCchHH
Confidence 9999999998753
No 183
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.78 E-value=8.2e-09 Score=71.97 Aligned_cols=38 Identities=29% Similarity=0.432 Sum_probs=35.2
Q ss_pred EECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 12 IIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 12 IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
|||||++||++|..|++.|.+|+|+|+.+.+||.+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~ 38 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSF 38 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEE
Confidence 89999999999999999999999999999999988765
No 184
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.77 E-value=1.1e-07 Score=91.33 Aligned_cols=97 Identities=18% Similarity=0.299 Sum_probs=79.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.+.. ... ..
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~------------------------------------~~~-~~ 183 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA------------------------------------SLM-PP 183 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc------------------------------------hhC-CH
Confidence 46899999999999999999999999999998764310 000 13
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 142 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~ 142 (433)
.+...+.+..++.++ ++.++++|.+++.+++.+.+++.+++++.+|.||+|+|.
T Consensus 184 ~~~~~l~~~l~~~gV--~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 184 EVSSRLQHRLTEMGV--HLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred HHHHHHHHHHHhCCC--EEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCC
Confidence 455667777778887 588899999998877778888888888999999999998
No 185
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.76 E-value=9.1e-08 Score=89.58 Aligned_cols=123 Identities=15% Similarity=0.189 Sum_probs=74.9
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEE-ccCCCCCCc-ccCCCC--------------CCcc-----ccce---EeecC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLY-EMESDLGGV-WNSQAS--------------CGRV-----YPSL---HLISP 64 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~-e~~~~~Gg~-~~~~~~--------------~~~~-----~~~~---~~~~~ 64 (433)
||+|||||.||+.||.++++.|.+|+++ .+.+.+|.. |+.... .+.+ .... .+|.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 7999999999999999999999999999 444445432 111100 0000 0000 01111
Q ss_pred CCcccCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeC-CeEEEEEccCcEEEeCEEEEcc
Q psy2398 65 KFNTQVPDYPMPDNYP--VYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYE-DIWEVELSNGKKKKYDFIAVCN 140 (433)
Q Consensus 65 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~-~~~~v~~~~g~~~~~d~vIvAt 140 (433)
+. |..+. ....+..+.+++++.++.. ++ .+ ++.+|+.+..++ .-+-|.+.+|..+.+|.||+||
T Consensus 81 kG---------pav~a~r~qvDr~~y~~~~~~~l~~~~nl--~i-~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaT 148 (392)
T PF01134_consen 81 KG---------PAVHALRAQVDRDKYSRAMREKLESHPNL--TI-IQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLAT 148 (392)
T ss_dssp S----------GGCTEEEEEE-HHHHHHHHHHHHHTSTTE--EE-EES-EEEEEECTTEEEEEEETTSEEEEECEEEE-T
T ss_pred CC---------CCccchHhhccHHHHHHHHHHHHhcCCCe--EE-EEcccceEEecCCeEEEEEeCCCCEEecCEEEEec
Confidence 10 11111 1356788999999988874 34 23 477899998864 4466788899999999999999
Q ss_pred CCC
Q psy2398 141 GAQ 143 (433)
Q Consensus 141 G~~ 143 (433)
|.+
T Consensus 149 Gtf 151 (392)
T PF01134_consen 149 GTF 151 (392)
T ss_dssp TTG
T ss_pred ccc
Confidence 973
No 186
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.76 E-value=1.5e-07 Score=92.94 Aligned_cols=101 Identities=19% Similarity=0.234 Sum_probs=80.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+. + .+ ..
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------~----~~--~~ 213 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL--------------------------------P----GE--DK 213 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC--------------------------------C----cC--CH
Confidence 4689999999999999999999999999999876541 0 01 24
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC---cEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG---KKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g---~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..++.++ +++++++|++++.+++.+.+.+.++ .++.+|.||+|+|. .|+..
T Consensus 214 ~~~~~l~~~l~~~gV--~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~--~p~~~ 275 (462)
T PRK06416 214 EISKLAERALKKRGI--KIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGR--RPNTE 275 (462)
T ss_pred HHHHHHHHHHHHcCC--EEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCC--ccCCC
Confidence 566777777777787 6899999999988766777776655 56899999999998 66554
No 187
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.75 E-value=5.1e-09 Score=101.74 Aligned_cols=130 Identities=18% Similarity=0.189 Sum_probs=36.2
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEee----c------CCCcccCCCCCCC--
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLI----S------PKFNTQVPDYPMP-- 76 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~-- 76 (433)
||+|||||++|++||..+++.|.+|+|+|+.+.+||....... ..+...... . ...+......+.+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~--~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~ 78 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGV--SPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDR 78 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS---EETTEEHHHHHHHHHHHHHHHST-----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCc--CChhhcchhhccCCCHHHHHHHHHhhhcccccccc
Confidence 7999999999999999999999999999999999997765421 001111100 0 0001110000000
Q ss_pred C-CC-CCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC-CeEEEEEcc---CcEEEeCEEEEccCC
Q psy2398 77 D-NY-PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVELSN---GKKKKYDFIAVCNGA 142 (433)
Q Consensus 77 ~-~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~-~~~~v~~~~---g~~~~~d~vIvAtG~ 142 (433)
. +. ........+...+.+.+.+.++ .+++++.|..+..++ .-+.|++.+ ..++.++.+|-|||-
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~l~e~gv--~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 79 YGWVSNVPFDPEVFKAVLDEMLAEAGV--EVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccc
Confidence 0 00 0123345556667777777777 599999999998874 334444443 346899999999995
No 188
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.74 E-value=1e-07 Score=90.99 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCC
Q psy2398 88 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 142 (433)
Q Consensus 88 ~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~ 142 (433)
+...++..+++... +++++++|+.|.++...+.+.+.+|..+.||.||++.=.
T Consensus 214 ~~~l~~al~~~l~~--~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~ 266 (444)
T COG1232 214 LQSLIEALAEKLEA--KIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPL 266 (444)
T ss_pred HHHHHHHHHHHhhh--ceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCH
Confidence 34555556666555 489999999999987778888888888999999998764
No 189
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.74 E-value=2.5e-07 Score=91.45 Aligned_cols=102 Identities=21% Similarity=0.276 Sum_probs=77.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||||++|+.+|..|++.|.+|+++|+.+.+. + .+ ..
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il--------------------------------~----~~--~~ 221 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL--------------------------------P----TE--DA 221 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC--------------------------------C----cC--CH
Confidence 4799999999999999999999999999999876431 0 01 24
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEE--eCCeEEEEEccC--cEEEeCEEEEccCCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQ--YEDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPN 150 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~--~~~~~~v~~~~g--~~~~~d~vIvAtG~~s~p~~p~ 150 (433)
++.+.+.+..++.++ .++++++|+.++. +++...+.+.+| .++.+|.||+|+|. .|+.+.
T Consensus 222 ~~~~~l~~~l~~~gI--~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~--~p~~~~ 285 (472)
T PRK05976 222 ELSKEVARLLKKLGV--RVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGR--RPNTEG 285 (472)
T ss_pred HHHHHHHHHHHhcCC--EEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCC--ccCCCC
Confidence 566677777777788 5899999999986 333333444455 35899999999998 666543
No 190
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.73 E-value=2e-07 Score=91.93 Aligned_cols=102 Identities=24% Similarity=0.202 Sum_probs=82.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ..
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------~--~d 215 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS------------------------------------F--LD 215 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC------------------------------------c--CC
Confidence 357899999999999999999999999999998765410 0 12
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+.+.+..++.++ +++++++|+.++.+++.+.+++.++.++.+|.||+|+|. .|+..
T Consensus 216 ~~~~~~l~~~l~~~gI--~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~--~p~~~ 275 (461)
T PRK05249 216 DEISDALSYHLRDSGV--TIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGR--TGNTD 275 (461)
T ss_pred HHHHHHHHHHHHHcCC--EEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecC--Ccccc
Confidence 4566677777777787 588899999998776778888877878999999999998 55543
No 191
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.73 E-value=2.4e-07 Score=91.50 Aligned_cols=134 Identities=16% Similarity=0.155 Sum_probs=79.7
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeec---CCC---------cccCCCCC-
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLIS---PKF---------NTQVPDYP- 74 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~---~~~---------~~~~~~~~- 74 (433)
+||+|||||++|+.+|..+++.|.+|+++|+....+|.+.-++..+....+..... ... ...|....
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 58999999999999999999999999999987544332211100000001100000 000 00011110
Q ss_pred --CCC-CCC-CCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEe--CCeEEEEEccCcEEEeCEEEEccCCCC
Q psy2398 75 --MPD-NYP-VYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQY--EDIWEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 75 --~~~-~~~-~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~--~~~~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
-+. +.+ ....+..+...+++.+++. ++ ..+...|+.+..+ +..+.|.+.+|..+.++.||+|||.+.
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV---~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNL---SLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCCc---EEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 011 111 1335667778888878776 44 2345677777654 345667888888899999999999853
No 192
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.73 E-value=2.3e-07 Score=90.87 Aligned_cols=100 Identities=14% Similarity=0.215 Sum_probs=78.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
+.+|+|||||+.|+.+|..|++.|.+|+++++.+.+.. . ...
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~------------------------------------~--~~~ 198 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP------------------------------------R--EEP 198 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC------------------------------------C--CCH
Confidence 46899999999999999999999999999999765410 0 124
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..++.++ +++++++|++++.+++.+.++. ++.++.+|.||+|+|. .|+..
T Consensus 199 ~~~~~~~~~l~~~GI--~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~--~p~~~ 256 (438)
T PRK07251 199 SVAALAKQYMEEDGI--TFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGR--KPNTE 256 (438)
T ss_pred HHHHHHHHHHHHcCC--EEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCC--CCCcc
Confidence 556667777778888 5888999999987666665654 4567999999999998 66654
No 193
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.72 E-value=1.5e-07 Score=94.33 Aligned_cols=37 Identities=27% Similarity=0.458 Sum_probs=33.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
...+||+|||||+.|+++|+.|+++|++|+|+|+.+.
T Consensus 4 ~~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~ 40 (546)
T PRK11101 4 SQETDVIIIGGGATGAGIARDCALRGLRCILVERHDI 40 (546)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 4468999999999999999999999999999999653
No 194
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.72 E-value=1.5e-07 Score=89.96 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=31.8
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
+||+|||||++|+++|++|++.|.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999999753
No 195
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.71 E-value=3.4e-07 Score=90.10 Aligned_cols=102 Identities=21% Similarity=0.259 Sum_probs=78.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.+.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. + . ..
T Consensus 169 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll--------------------------------~----~--~d 210 (458)
T PRK06912 169 IPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL--------------------------------P----G--ED 210 (458)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC--------------------------------c----c--cc
Confidence 34689999999999999999999999999999876441 0 0 12
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC-cEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-KKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g-~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+.+.+..++.++ +++++++|++++.++..+.+...++ .++.+|.||+|+|. .|+..
T Consensus 211 ~e~~~~l~~~L~~~GI--~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~--~p~~~ 271 (458)
T PRK06912 211 EDIAHILREKLENDGV--KIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGR--KPRVQ 271 (458)
T ss_pred HHHHHHHHHHHHHCCC--EEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCC--ccCCC
Confidence 4566777777777788 5899999999987655555544322 35899999999998 66654
No 196
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.71 E-value=2.7e-07 Score=89.96 Aligned_cols=135 Identities=21% Similarity=0.224 Sum_probs=77.6
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCC------------------------------CCcccc-
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQAS------------------------------CGRVYP- 57 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~------------------------------~~~~~~- 57 (433)
||+|||+|.+|++||..++++|.+|+|+||.+..||....... .....+
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 8999999999999999999999999999999987763322210 000000
Q ss_pred -------------------ceEeec-CC---CcccCCCCCCC----CCCC-----CCCCHHHHHHHHHHHHHHcCCCcce
Q psy2398 58 -------------------SLHLIS-PK---FNTQVPDYPMP----DNYP-----VYPNHSMMLDYLRSYAKKFDVYNHS 105 (433)
Q Consensus 58 -------------------~~~~~~-~~---~~~~~~~~~~~----~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~i 105 (433)
.+.+.. .. ....+...... .... .......+.+.+.+.+++.++ .+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv--~i 158 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGV--DI 158 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTE--EE
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCe--ee
Confidence 000000 00 00000000000 0000 112457788888888998886 69
Q ss_pred EeCcEEEEEEEeCCeEE-EEE---ccCc--EEEeCEEEEccCCCCC
Q psy2398 106 IFNTEVINLEQYEDIWE-VEL---SNGK--KKKYDFIAVCNGAQRV 145 (433)
Q Consensus 106 ~~~~~V~~v~~~~~~~~-v~~---~~g~--~~~~d~vIvAtG~~s~ 145 (433)
+++++++++..+++..+ +.. .++. .+.++.||+|||.+..
T Consensus 159 ~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 159 RFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp EESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred eccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 99999999998865432 222 2344 4789999999999764
No 197
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.71 E-value=2.2e-07 Score=89.67 Aligned_cols=99 Identities=17% Similarity=0.293 Sum_probs=79.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|+.|+.+|..|++.|.+|+++|+.+.+.+. ....
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------~~~~ 186 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR-------------------------------------NAPP 186 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh-------------------------------------hcCH
Confidence 468999999999999999999999999999987654110 0124
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVAR 147 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~ 147 (433)
.+.+++.+..++.++ +++++++|++++. ++.+.+++.+|+++.+|.||+|+|. .|+
T Consensus 187 ~~~~~l~~~l~~~GV--~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~--~pn 242 (396)
T PRK09754 187 PVQRYLLQRHQQAGV--RILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGI--SAN 242 (396)
T ss_pred HHHHHHHHHHHHCCC--EEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCC--Chh
Confidence 556777777778888 5889999999876 5567788888888999999999998 454
No 198
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.70 E-value=3.4e-07 Score=89.17 Aligned_cols=58 Identities=22% Similarity=0.170 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeE-EEEEccCcEEEeCEEEEccCCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVELSNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~-~v~~~~g~~~~~d~vIvAtG~~s~ 145 (433)
...+.+.+.+.+++.|+ .++++++|+.++.+++.+ .++++++ ++.+|.||+|+|.++.
T Consensus 200 p~~~~~~l~~~~~~~G~--~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGV--KFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYST 258 (416)
T ss_pred HHHHHHHHHHHHHHCCC--EEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcchH
Confidence 44666667777777777 588899999998876665 4666554 6899999999999753
No 199
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.70 E-value=9.2e-08 Score=85.60 Aligned_cols=42 Identities=29% Similarity=0.441 Sum_probs=37.4
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcc
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW 46 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~ 46 (433)
...+.+|+|||+|++||+||..|.++ .+|++||....+||.-
T Consensus 5 ~~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha 46 (447)
T COG2907 5 PHPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHA 46 (447)
T ss_pred CCCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCcc
Confidence 45678999999999999999999986 7999999999998843
No 200
>PRK06116 glutathione reductase; Validated
Probab=98.70 E-value=2.8e-07 Score=90.61 Aligned_cols=101 Identities=13% Similarity=0.130 Sum_probs=80.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. .+ ..
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------~~--~~ 208 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR------------------------------------GF--DP 208 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc------------------------------------cc--CH
Confidence 47899999999999999999999999999998764310 01 24
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC-eEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-IWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~-~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..++.++ +++++++|.+++.+++ .+.+.+.+|.++.+|.||+|+|. .|+..
T Consensus 209 ~~~~~l~~~L~~~GV--~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~--~p~~~ 268 (450)
T PRK06116 209 DIRETLVEEMEKKGI--RLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGR--EPNTD 268 (450)
T ss_pred HHHHHHHHHHHHCCc--EEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCC--CcCCC
Confidence 566677777778888 5899999999987644 37788878888999999999998 66654
No 201
>KOG0685|consensus
Probab=98.69 E-value=9e-08 Score=89.47 Aligned_cols=40 Identities=30% Similarity=0.498 Sum_probs=35.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCCCCCc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESDLGGV 45 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~~Gg~ 45 (433)
...+|+|||||.|||+||.+|.+.|. +++|+|..+.+||.
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR 60 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR 60 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence 44689999999999999999998766 89999999999883
No 202
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.68 E-value=3.2e-07 Score=89.98 Aligned_cols=100 Identities=15% Similarity=0.159 Sum_probs=80.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+++|||+|+.|+.+|..|++.|.+|+++++.+.+. +.+ ..
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l------------------------------------~~~--d~ 207 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL------------------------------------RGF--DD 207 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC------------------------------------ccc--CH
Confidence 4689999999999999999999999999999876430 011 24
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
++.+.+.+..++.++ +++++++|.+++.+++...+++.++.++.+|.||+|+|. .|+.
T Consensus 208 ~~~~~l~~~l~~~gV--~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~--~pn~ 265 (446)
T TIGR01424 208 DMRALLARNMEGRGI--RIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGR--SPNT 265 (446)
T ss_pred HHHHHHHHHHHHCCC--EEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCC--CcCC
Confidence 556667777777788 588999999998766667787777778999999999998 5554
No 203
>PTZ00367 squalene epoxidase; Provisional
Probab=98.68 E-value=2.8e-07 Score=91.93 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=32.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 45799999999999999999999999999999875
No 204
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.68 E-value=4.2e-07 Score=89.70 Aligned_cols=101 Identities=12% Similarity=0.129 Sum_probs=78.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. .+ ..
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------~~--d~ 207 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP------------------------------------RE--EP 207 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC------------------------------------cc--CH
Confidence 47899999999999999999999999999998765410 01 24
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc---CcEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN---GKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~---g~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..+..++ +++++++|+.++.+++.+.+++.. +.++.+|.||+|+|. .|+..
T Consensus 208 ~~~~~l~~~l~~~gV--~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~--~p~~~ 269 (463)
T TIGR02053 208 EISAAVEEALAEEGI--EVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGR--RPNTD 269 (463)
T ss_pred HHHHHHHHHHHHcCC--EEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECC--CcCCC
Confidence 456677777777788 589999999998765666666532 357999999999998 66654
No 205
>PRK07846 mycothione reductase; Reviewed
Probab=98.68 E-value=2.9e-07 Score=90.24 Aligned_cols=101 Identities=16% Similarity=0.170 Sum_probs=77.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
+.+|+|||||+.|+.+|..|++.|.+|+++++.+.+.. .+ ..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~------------------------------------~~--d~ 207 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR------------------------------------HL--DD 207 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc------------------------------------cc--CH
Confidence 57999999999999999999999999999998765410 01 13
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN 150 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~ 150 (433)
++.+.+.+..+ .++ +++++++|++++.+++...+++.++.++.+|.|++|+|. .|+.+.
T Consensus 208 ~~~~~l~~l~~-~~v--~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~--~pn~~~ 266 (451)
T PRK07846 208 DISERFTELAS-KRW--DVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGR--VPNGDL 266 (451)
T ss_pred HHHHHHHHHHh-cCe--EEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECC--ccCccc
Confidence 34455554433 355 588899999998766667777777888999999999998 666543
No 206
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.67 E-value=2.8e-07 Score=86.22 Aligned_cols=42 Identities=24% Similarity=0.446 Sum_probs=38.6
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV 45 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~ 45 (433)
..+..||+|||||.+||.+|..|.+.|++|+|+|.++++||.
T Consensus 4 p~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR 45 (450)
T COG1231 4 PPKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGR 45 (450)
T ss_pred CCCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCce
Confidence 455689999999999999999999999999999999998874
No 207
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.65 E-value=8.2e-07 Score=87.78 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=78.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ..
T Consensus 182 ~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------~--~d 223 (475)
T PRK06327 182 VPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA------------------------------------A--AD 223 (475)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC------------------------------------c--CC
Confidence 347999999999999999999999999999998764310 0 12
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc--C--cEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN--G--KKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~--g--~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+.+.+..++.++ +++.+++|++++.+++...+.+.+ + ..+.+|.|++|+|. .|+.+
T Consensus 224 ~~~~~~~~~~l~~~gi--~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~--~p~~~ 287 (475)
T PRK06327 224 EQVAKEAAKAFTKQGL--DIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR--VPNTD 287 (475)
T ss_pred HHHHHHHHHHHHHcCc--EEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCC--ccCCC
Confidence 4555666666677787 588899999998776666666544 3 46899999999998 66655
No 208
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.65 E-value=4.4e-07 Score=87.53 Aligned_cols=59 Identities=22% Similarity=0.173 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~ 145 (433)
...+...+...+.+.+.. .+..++.+..++.+...|.|.+.+|. +.+|.||+|+|.++.
T Consensus 155 p~~~~~~l~~~~~~~G~~-~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~ 213 (387)
T COG0665 155 PRLLTRALAAAAEELGVV-IIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAG 213 (387)
T ss_pred HHHHHHHHHHHHHhcCCe-EEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence 455566666666776642 45668888888763256888888886 999999999998653
No 209
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.65 E-value=5.3e-07 Score=88.84 Aligned_cols=101 Identities=14% Similarity=0.144 Sum_probs=81.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
+.+++|||+|+.|+.+|..|++.|.+|+++++.+.+.. .+ ..
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------~~--d~ 218 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP------------------------------------GE--DA 218 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC------------------------------------CC--CH
Confidence 46899999999999999999999999999998765410 11 24
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..++.++ ++..+++|.+++.+++.+.+.+.++.++.+|.|++|+|. .|+..
T Consensus 219 ~~~~~l~~~L~~~gV--~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~--~pn~~ 277 (466)
T PRK07845 219 DAAEVLEEVFARRGM--TVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGS--VPNTA 277 (466)
T ss_pred HHHHHHHHHHHHCCc--EEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecC--CcCCC
Confidence 456677777778888 588899999998766677788778888999999999998 66654
No 210
>PLN02507 glutathione reductase
Probab=98.64 E-value=5.3e-07 Score=89.38 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=81.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+- +. ...
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l------------------------------------~~--~d~ 244 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL------------------------------------RG--FDD 244 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC------------------------------------cc--cCH
Confidence 4689999999999999999999999999999876430 01 124
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..++.++ +++++++|.+++.+++...+.+.++.++.+|.|++|+|. .|+..
T Consensus 245 ~~~~~l~~~l~~~GI--~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~--~pn~~ 303 (499)
T PLN02507 245 EMRAVVARNLEGRGI--NLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGR--APNTK 303 (499)
T ss_pred HHHHHHHHHHHhCCC--EEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecC--CCCCC
Confidence 566777777777788 589999999998766677788877878999999999998 56554
No 211
>PRK06370 mercuric reductase; Validated
Probab=98.64 E-value=5.9e-07 Score=88.65 Aligned_cols=101 Identities=21% Similarity=0.217 Sum_probs=78.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ...
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~------------------------------------~--~~~ 212 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP------------------------------------R--EDE 212 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc------------------------------------c--cCH
Confidence 47899999999999999999999999999998765410 0 124
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc---cCcEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS---NGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~---~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+....++.++ +++++++|.+++.+++...+.+. ++.++.+|.||+|+|. .|+..
T Consensus 213 ~~~~~l~~~l~~~GV--~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~--~pn~~ 274 (463)
T PRK06370 213 DVAAAVREILEREGI--DVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGR--VPNTD 274 (463)
T ss_pred HHHHHHHHHHHhCCC--EEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCC--CcCCC
Confidence 556677777778888 58999999999876555555442 2446899999999998 66654
No 212
>PRK07233 hypothetical protein; Provisional
Probab=98.64 E-value=4.9e-07 Score=88.64 Aligned_cols=38 Identities=29% Similarity=0.615 Sum_probs=36.0
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcc
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW 46 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~ 46 (433)
+|+|||||++||+||..|++.|++|+|+|+++.+||.+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCce
Confidence 68999999999999999999999999999999999854
No 213
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.63 E-value=6.2e-07 Score=88.50 Aligned_cols=101 Identities=18% Similarity=0.230 Sum_probs=79.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
+.+|+|||+|+.|+.+|..|++.|.+|+++|+.+.+. + .+ ..
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l--------------------------------~----~~--d~ 213 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL--------------------------------P----NE--DA 213 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC--------------------------------C----cc--CH
Confidence 4689999999999999999999999999999876441 0 11 24
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc--cC--cEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS--NG--KKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~--~g--~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..++.++ +++++++|++++.+++.+.+.+. ++ .++.+|.||+|+|. .|+..
T Consensus 214 ~~~~~l~~~l~~~gV--~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~--~pn~~ 276 (466)
T PRK07818 214 EVSKEIAKQYKKLGV--KILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGF--APRVE 276 (466)
T ss_pred HHHHHHHHHHHHCCC--EEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCc--ccCCC
Confidence 556777777778888 59999999999876666666554 45 36899999999998 66654
No 214
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.63 E-value=5.9e-07 Score=88.06 Aligned_cols=101 Identities=13% Similarity=0.133 Sum_probs=79.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
+.+|+|||||+.|+.+|..|++.|.+|+++++.+.+.. .+ ..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~------------------------------------~~--d~ 207 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR------------------------------------SF--DS 207 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc------------------------------------cc--CH
Confidence 47899999999999999999999999999998765410 11 24
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC-CeEEEEEccC-cEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVELSNG-KKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~-~~~~v~~~~g-~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..+..++ +++.+++|++++.++ +...+++.++ ..+.+|.||+|+|. .|+..
T Consensus 208 ~~~~~~~~~l~~~gI--~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~--~pn~~ 268 (450)
T TIGR01421 208 MISETITEEYEKEGI--NVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGR--KPNTK 268 (450)
T ss_pred HHHHHHHHHHHHcCC--EEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCC--CcCcc
Confidence 456667777777788 588999999998753 3366777676 56899999999998 66654
No 215
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.63 E-value=4.3e-07 Score=89.30 Aligned_cols=59 Identities=22% Similarity=0.365 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCeEEEEEc---cC--cEEEeCEEEEccCCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELS---NG--KKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~v~~~---~g--~~~~~d~vIvAtG~~s~ 145 (433)
...+.+.+.+.++..|+ .++++++|+.++.+ ++.|.+++. ++ .++.+|+||+|+|.++.
T Consensus 177 p~~l~~aL~~~a~~~Gv--~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGT--TIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGAL 241 (483)
T ss_pred HHHHHHHHHHHHHhCCC--EEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchH
Confidence 46667777777777777 69999999999885 456887643 23 25899999999999764
No 216
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.61 E-value=6.6e-07 Score=89.60 Aligned_cols=138 Identities=9% Similarity=0.036 Sum_probs=80.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC--------CCC---------------CCccccc----
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS--------QAS---------------CGRVYPS---- 58 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~--------~~~---------------~~~~~~~---- 58 (433)
..+||+|||+|.+||+||..+++.|.+|+|+||....+|.-.. ..+ ...+-+.
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~ 94 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRS 94 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 3589999999999999999999999999999998865432111 100 0000000
Q ss_pred eEeecC---CCc----ccCCCCC--------CC-CCCCC------CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEE
Q psy2398 59 LHLISP---KFN----TQVPDYP--------MP-DNYPV------YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ 116 (433)
Q Consensus 59 ~~~~~~---~~~----~~~~~~~--------~~-~~~~~------~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~ 116 (433)
+.-.++ .++ ..|.... .. ..... -.....+.+.|.+.+++.++ .+..++.|+.+..
T Consensus 95 ~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV--~i~~~~~v~~Li~ 172 (541)
T PRK07804 95 LVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPL--DIREHALALDLLT 172 (541)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCC--EEEECeEeeeeEE
Confidence 000000 000 0011000 00 00000 11356778888888888886 5888999999976
Q ss_pred eCC----eEEEE-----EccC-cEEEeCEEEEccCCCCC
Q psy2398 117 YED----IWEVE-----LSNG-KKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 117 ~~~----~~~v~-----~~~g-~~~~~d~vIvAtG~~s~ 145 (433)
+++ +..+. ..++ ..+.++.||+|||.++.
T Consensus 173 ~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 173 DGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred cCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 532 23333 1222 35789999999999763
No 217
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.61 E-value=8.3e-07 Score=89.70 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=37.9
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV 45 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~ 45 (433)
.+..+||+|||+|++|++||..++++|.+|+|+||....||.
T Consensus 6 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~ 47 (574)
T PRK12842 6 NELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGT 47 (574)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Confidence 345689999999999999999999999999999999887764
No 218
>KOG2415|consensus
Probab=98.60 E-value=4e-07 Score=83.40 Aligned_cols=137 Identities=15% Similarity=0.211 Sum_probs=81.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc------CCCeEEEccCCCCCCcccCCCC----------------CCcc-----ccc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG------NINYDLYEMESDLGGVWNSQAS----------------CGRV-----YPS 58 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~------g~~v~v~e~~~~~Gg~~~~~~~----------------~~~~-----~~~ 58 (433)
+.+||+||||||+||+||++|.++ .++|+|+||...+||......- .... -..
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~ 154 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDK 154 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccccc
Confidence 458999999999999999999875 5699999999999985443321 0000 111
Q ss_pred eEeecCCCcccCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe--CCeEEEEEc---------
Q psy2398 59 LHLISPKFNTQVPD-YPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY--EDIWEVELS--------- 126 (433)
Q Consensus 59 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~--~~~~~v~~~--------- 126 (433)
+...+.+.....+. .++.+.....++-.++.+++-+.|+.+|+. |.-+-.+..|-.+ +.-.-|.+.
T Consensus 155 ~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvE--iyPg~aaSevly~edgsVkGiaT~D~GI~k~G~ 232 (621)
T KOG2415|consen 155 FKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVE--IYPGFAASEVLYDEDGSVKGIATNDVGISKDGA 232 (621)
T ss_pred eeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCce--eccccchhheeEcCCCcEeeEeeccccccCCCC
Confidence 12222222222221 122233334456789999999999999884 4433333333332 111222222
Q ss_pred ------cCcEEEeCEEEEccCCCC
Q psy2398 127 ------NGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 127 ------~g~~~~~d~vIvAtG~~s 144 (433)
.|-.+.++.-|.|-|++.
T Consensus 233 pKd~FerGme~hak~TifAEGc~G 256 (621)
T KOG2415|consen 233 PKDTFERGMEFHAKVTIFAEGCHG 256 (621)
T ss_pred ccccccccceecceeEEEeccccc
Confidence 233477888888888753
No 219
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.59 E-value=9.6e-07 Score=86.98 Aligned_cols=58 Identities=17% Similarity=0.378 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHcC-CCcceEeCcEEEEEEEe-CCeEEEEEcc---Cc--EEEeCEEEEccCCCCC
Q psy2398 86 SMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQY-EDIWEVELSN---GK--KKKYDFIAVCNGAQRV 145 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~-~~~~i~~~~~V~~v~~~-~~~~~v~~~~---g~--~~~~d~vIvAtG~~s~ 145 (433)
..+.+.+.+.+++.+ + +++++++|+.++.+ ++.|.+++.+ +. ++.+++||+|+|.++.
T Consensus 183 ~~l~~aL~~~a~~~Ggv--~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 183 GALTRQLVGYLQKQGNF--ELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred HHHHHHHHHHHHhCCCe--EEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 456666666677665 5 58999999999885 4458887543 43 5899999999999864
No 220
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.59 E-value=9.7e-07 Score=85.72 Aligned_cols=57 Identities=19% Similarity=0.069 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCe-EEEEEccCcEEEeCEEEEccCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDI-WEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~-~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
...+...+...+.+.|+ ++..+++|+.++.. ++. +.|.+.++ ++.++.||+|+|.++
T Consensus 182 p~~l~~~l~~~a~~~Gv--~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 182 HDAVAWGYARGADRRGV--DIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS 240 (407)
T ss_pred HHHHHHHHHHHHHHCCC--EEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence 34455556667777787 58889999999764 344 45777776 699999999999865
No 221
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.59 E-value=1.2e-07 Score=98.67 Aligned_cols=120 Identities=14% Similarity=0.187 Sum_probs=75.7
Q ss_pred CcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCC---CCcccCCCC-------CC-----------ccccceEeecC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDL---GGVWNSQAS-------CG-----------RVYPSLHLISP 64 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~---Gg~~~~~~~-------~~-----------~~~~~~~~~~~ 64 (433)
++|+||||||+||++|..|++. |++|+|+|+.+.. |........ .. ..+....+...
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFK 80 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEEC
Confidence 3799999999999999999998 8999999998753 321111100 00 00111111100
Q ss_pred CCcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCC
Q psy2398 65 KFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
.... .. ....+ .-..+.++.+.|.+.+.+.++ .++++++|+.++. ....+|.||.|+|.+|
T Consensus 81 g~~~--~~--~g~~~-~~i~R~~L~~~L~e~a~~~GV--~i~~g~~v~~i~~------------~~~~~D~VVgADG~~S 141 (765)
T PRK08255 81 GRRI--RS--GGHGF-AGIGRKRLLNILQARCEELGV--KLVFETEVPDDQA------------LAADADLVIASDGLNS 141 (765)
T ss_pred CEEE--EE--CCeeE-ecCCHHHHHHHHHHHHHHcCC--EEEeCCccCchhh------------hhcCCCEEEEcCCCCH
Confidence 0000 00 00001 125689999999999999887 5899988876532 1257999999999987
Q ss_pred CC
Q psy2398 145 VA 146 (433)
Q Consensus 145 ~p 146 (433)
..
T Consensus 142 ~v 143 (765)
T PRK08255 142 RI 143 (765)
T ss_pred HH
Confidence 44
No 222
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.58 E-value=1.2e-06 Score=88.01 Aligned_cols=46 Identities=15% Similarity=0.279 Sum_probs=41.1
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcc
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW 46 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~ 46 (433)
|.|....+||+|||+|++|+++|..++++|.+|+||||.+..||..
T Consensus 1 ~~~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~ 46 (557)
T PRK07843 1 MAMTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGST 46 (557)
T ss_pred CCCCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccc
Confidence 6666778999999999999999999999999999999988777643
No 223
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.58 E-value=1.1e-06 Score=87.00 Aligned_cols=136 Identities=12% Similarity=0.042 Sum_probs=78.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC--------CCCCc---------------cccce----
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ--------ASCGR---------------VYPSL---- 59 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~--------~~~~~---------------~~~~~---- 59 (433)
.+||+|||+|.+||+||..+++.|. |+|+||.+..||.-... .+..+ +-+.+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 3799999999999999999999997 99999986554422111 00000 00000
Q ss_pred EeecC---CCc----ccCCCCC--------CC-CCCC-----CCCCHHHHHHHHHHHHHH-cCCCcceEeCcEEEEEEEe
Q psy2398 60 HLISP---KFN----TQVPDYP--------MP-DNYP-----VYPNHSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQY 117 (433)
Q Consensus 60 ~~~~~---~~~----~~~~~~~--------~~-~~~~-----~~~~~~~~~~~l~~~~~~-~~~~~~i~~~~~V~~v~~~ 117 (433)
...++ .++ ..|.... .. ...+ .-.....+.+.+.+.+++ .++ .+++++.|+.+..+
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi--~i~~~~~v~~l~~~ 158 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNI--RIIEGENALDLLIE 158 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCc--EEEECeEeeeeecc
Confidence 00000 000 0011000 00 0000 011345677778777776 466 58899999999765
Q ss_pred CCeEE-EEEcc-C--cEEEeCEEEEccCCCCC
Q psy2398 118 EDIWE-VELSN-G--KKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 118 ~~~~~-v~~~~-g--~~~~~d~vIvAtG~~s~ 145 (433)
++... +...+ + ..+.++.||+|||.++.
T Consensus 159 ~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 159 TGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred CCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 54433 33322 2 35789999999999764
No 224
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.58 E-value=1.1e-06 Score=86.62 Aligned_cols=101 Identities=16% Similarity=0.150 Sum_probs=77.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||+|+.|+.+|..|.+.|.+|+++|+.+.+.. .+ .
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~------------------------------------~~--d 214 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP------------------------------------GT--D 214 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC------------------------------------CC--C
Confidence 457999999999999999999999999999998765410 11 1
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc---c--CcEEEeCEEEEccCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS---N--GKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~---~--g~~~~~d~vIvAtG~~s~p~~ 148 (433)
.++.+.+.+..++.++ +++++++|++++.+++.+.+.+. + +..+.+|.|++|+|. .|+.
T Consensus 215 ~~~~~~l~~~l~~~gV--~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~--~pn~ 278 (466)
T PRK06115 215 TETAKTLQKALTKQGM--KFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGR--RPYT 278 (466)
T ss_pred HHHHHHHHHHHHhcCC--EEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCC--cccc
Confidence 3455667777777788 58999999999876556655543 2 346899999999998 5554
No 225
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.57 E-value=1e-06 Score=86.46 Aligned_cols=100 Identities=20% Similarity=0.200 Sum_probs=76.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. .+ ..
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~------------------------------------~~--d~ 210 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR------------------------------------HL--DE 210 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc------------------------------------cc--CH
Confidence 47899999999999999999999999999998764310 00 13
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..+ .++ .++++++|++++.+++.+.+++.+++++.+|.|++|+|. .|+..
T Consensus 211 ~~~~~l~~~~~-~gI--~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~--~pn~~ 268 (452)
T TIGR03452 211 DISDRFTEIAK-KKW--DIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGR--VPNGD 268 (452)
T ss_pred HHHHHHHHHHh-cCC--EEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeecc--CcCCC
Confidence 34444544433 355 588899999998766667777777778999999999998 66553
No 226
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.57 E-value=2.6e-07 Score=93.59 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=33.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDL 42 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~ 42 (433)
.+||+|||||.+||+||..+++. |.+|+|+||....
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK 48 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence 47999999999999999999998 9999999998753
No 227
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.57 E-value=1.2e-06 Score=88.67 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=32.5
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG 43 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G 43 (433)
||+|||+|.+|++||..+++.|.+|+|+||....+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~ 35 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTR 35 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence 79999999999999999999999999999987544
No 228
>PRK08275 putative oxidoreductase; Provisional
Probab=98.56 E-value=2.3e-07 Score=93.28 Aligned_cols=138 Identities=14% Similarity=0.062 Sum_probs=78.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCC-CCcccCCC--CCC----------------------ccccc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDL-GGVWNSQA--SCG----------------------RVYPS 58 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~-Gg~~~~~~--~~~----------------------~~~~~ 58 (433)
..+||+|||||.+|++||..+++. |.+|+|+||.+.. +|...... ... ...+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 87 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK 87 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence 457999999999999999999987 6899999998753 22211100 000 00000
Q ss_pred e----EeecC---CCc----ccCCCCCCC-------CCCC----CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEE
Q psy2398 59 L----HLISP---KFN----TQVPDYPMP-------DNYP----VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ 116 (433)
Q Consensus 59 ~----~~~~~---~~~----~~~~~~~~~-------~~~~----~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~ 116 (433)
+ ...++ .++ ..|...... .... .......+.+.+...+++.++ ++.+++.|+.+..
T Consensus 88 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv--~i~~~~~v~~Li~ 165 (554)
T PRK08275 88 AVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARV--LITNRIMATRLLT 165 (554)
T ss_pred HHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCC--EEEcceEEEEEEE
Confidence 0 00000 000 000000000 0000 011345677888888887777 5899999999976
Q ss_pred e-CCeEE-E---EEccCc--EEEeCEEEEccCCCCC
Q psy2398 117 Y-EDIWE-V---ELSNGK--KKKYDFIAVCNGAQRV 145 (433)
Q Consensus 117 ~-~~~~~-v---~~~~g~--~~~~d~vIvAtG~~s~ 145 (433)
+ ++... + ...++. .+.++.||+|||.++.
T Consensus 166 ~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 166 DADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred cCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 5 44322 1 223453 4789999999999653
No 229
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=1.2e-06 Score=88.60 Aligned_cols=39 Identities=10% Similarity=0.205 Sum_probs=34.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG 43 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G 43 (433)
...+||+|||||.+||+||..+++.|.+|+|+||....+
T Consensus 10 ~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~ 48 (598)
T PRK09078 10 DHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTR 48 (598)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 345799999999999999999999999999999976543
No 230
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.55 E-value=6.2e-07 Score=86.93 Aligned_cols=41 Identities=24% Similarity=0.452 Sum_probs=37.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV 45 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~ 45 (433)
...+||+|||||+.|+.+|+.++.+|++|+++|+++...|+
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGT 50 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGT 50 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcc
Confidence 46789999999999999999999999999999999875554
No 231
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.55 E-value=1.4e-06 Score=85.50 Aligned_cols=100 Identities=18% Similarity=0.227 Sum_probs=79.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +.+ .
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l------------------------------------~~~--~ 198 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL------------------------------------PRE--D 198 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC------------------------------------CCc--C
Confidence 34689999999999999999999999999999875431 011 2
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
.++.+.+.+..++.++ +++++++|.+++.+++.+.+.+.++ ++.+|.|++|+|. .|+.
T Consensus 199 ~~~~~~l~~~l~~~gV--~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~--~pn~ 256 (441)
T PRK08010 199 RDIADNIATILRDQGV--DIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGR--QPAT 256 (441)
T ss_pred HHHHHHHHHHHHhCCC--EEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecC--CcCC
Confidence 4556777777888888 5888999999987666677766555 5899999999998 5554
No 232
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.54 E-value=1e-06 Score=85.74 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=33.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg 44 (433)
..+||+|||+|.+||+||..+. .|.+|+|+||.+..||
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg 40 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC 40 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence 4589999999999999999985 6999999999887654
No 233
>PRK07121 hypothetical protein; Validated
Probab=98.54 E-value=3.8e-07 Score=90.64 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=36.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV 45 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~ 45 (433)
..+||+|||+|.+|++||.++++.|.+|+|+||....||.
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~ 58 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGA 58 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCc
Confidence 3589999999999999999999999999999998876663
No 234
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.54 E-value=2.8e-07 Score=92.51 Aligned_cols=136 Identities=16% Similarity=0.028 Sum_probs=78.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC-CCCcccCCC--------CCCcc---ccc--------------
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD-LGGVWNSQA--------SCGRV---YPS-------------- 58 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~-~Gg~~~~~~--------~~~~~---~~~-------------- 58 (433)
...+||+|||+|.+|++||..+ +.|.+|+|+||... .||.-.... +..+. +..
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv 83 (543)
T PRK06263 5 IMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLV 83 (543)
T ss_pred eeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHH
Confidence 3457999999999999999999 88999999999764 344221110 00000 000
Q ss_pred --eEeecC---CCcccCCCCCCC-----------CCCCCC--------CCHHHHHHHHHHHHHHcCCCcceEeCcEEEEE
Q psy2398 59 --LHLISP---KFNTQVPDYPMP-----------DNYPVY--------PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINL 114 (433)
Q Consensus 59 --~~~~~~---~~~~~~~~~~~~-----------~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v 114 (433)
+...++ .++..+ ..++. .....+ .....+...+.+.+.+.++ .+.+++.++.+
T Consensus 84 ~~~~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv--~i~~~t~v~~L 160 (543)
T PRK06263 84 EILVKEAPKRLKDLEKF-GALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERI--KILEEVMAIKL 160 (543)
T ss_pred HHHHHHHHHHHHHHHHc-CCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCC--EEEeCeEeeee
Confidence 000000 000000 00000 000001 1245677777777777777 68999999998
Q ss_pred EEeCCe-EE-EE--E-ccCc--EEEeCEEEEccCCCC
Q psy2398 115 EQYEDI-WE-VE--L-SNGK--KKKYDFIAVCNGAQR 144 (433)
Q Consensus 115 ~~~~~~-~~-v~--~-~~g~--~~~~d~vIvAtG~~s 144 (433)
..++++ .. +. . .++. .+.++.||+|||.++
T Consensus 161 i~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 161 IVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred EEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 776443 21 22 1 3453 478999999999965
No 235
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.54 E-value=1.2e-06 Score=88.63 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEE----EEEccCc--EEEeCEEEEccCCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE----VELSNGK--KKKYDFIAVCNGAQRV 145 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~----v~~~~g~--~~~~d~vIvAtG~~s~ 145 (433)
...+...+.+.+.+.++ ++..++.|+.+..+++... +...++. .+.++.||+|||.++.
T Consensus 134 G~~i~~~L~~~~~~~gi--~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 134 GHAILHELVNNLRRYGV--TIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred hHHHHHHHHHHHhhCCC--EEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence 45677777777777777 5888999999876544321 2333443 4789999999999753
No 236
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.53 E-value=2.8e-06 Score=83.42 Aligned_cols=41 Identities=27% Similarity=0.266 Sum_probs=37.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhc----CCCeEEEccCCCCCCccc
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG----NINYDLYEMESDLGGVWN 47 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~----g~~v~v~e~~~~~Gg~~~ 47 (433)
+++++|||||++||+||.+|.+. |.+|+|+|+.+.+||...
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 57999999999999999999985 679999999999999765
No 237
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.53 E-value=1.5e-06 Score=87.90 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=35.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcC---CCeEEEccCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGN---INYDLYEMESDLGG 44 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g---~~v~v~e~~~~~Gg 44 (433)
...+||+|||||.+||+||..+++.| .+|+|+||....|+
T Consensus 3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 45689999999999999999999998 89999999876554
No 238
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.52 E-value=6.8e-07 Score=90.93 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=33.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG 43 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G 43 (433)
.+||+|||||.+|++||..+++.|.+|+|+||....+
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 4799999999999999999999999999999987543
No 239
>KOG0029|consensus
Probab=98.52 E-value=1.1e-07 Score=93.03 Aligned_cols=43 Identities=26% Similarity=0.422 Sum_probs=39.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
.++++|+|||||+|||+||+.|.+.|++|+|+|.++.+||...
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIY 55 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeE
Confidence 3567999999999999999999999999999999999998544
No 240
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.52 E-value=3.1e-06 Score=85.29 Aligned_cols=39 Identities=15% Similarity=0.235 Sum_probs=34.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg 44 (433)
..+||+|||+|.+|++||..+++.|.+|+|+||....+|
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g 42 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS 42 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 457999999999999999999999999999999865443
No 241
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.52 E-value=1.2e-05 Score=76.06 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
||+|||+|.+||++|+.|.+. .+|+|+-|.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 999999999999999999997 99999999764
No 242
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.52 E-value=1.7e-06 Score=85.26 Aligned_cols=102 Identities=14% Similarity=0.161 Sum_probs=78.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc---CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG---NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVY 82 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~---g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (433)
.+.+++|||||+.|+.+|..+... |.+|+++++.+.+.. .+
T Consensus 186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~------------------------------------~~ 229 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR------------------------------------GF 229 (486)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc------------------------------------cc
Confidence 357899999999999999876654 899999998765410 11
Q ss_pred CCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 83 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
..++.+.+.+..++.++ ++++++.|++++.+ ++...+.+.++.++.+|.|++|+|. .|+..
T Consensus 230 --d~~~~~~l~~~L~~~GI--~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~--~Pn~~ 291 (486)
T TIGR01423 230 --DSTLRKELTKQLRANGI--NIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGR--VPRTQ 291 (486)
T ss_pred --CHHHHHHHHHHHHHcCC--EEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCC--CcCcc
Confidence 25566777777788888 58999999999875 3335667767778999999999998 55543
No 243
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.51 E-value=1.9e-06 Score=84.99 Aligned_cols=101 Identities=22% Similarity=0.297 Sum_probs=75.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||||+.|+.+|..|.+.|.+|+++|+.+.+.. .+ .
T Consensus 173 ~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~------------------------------------~~--d 214 (471)
T PRK06467 173 VPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP------------------------------------AA--D 214 (471)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC------------------------------------cC--C
Confidence 347899999999999999999999999999998765410 11 2
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEcc--C--cEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN--G--KKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~--g--~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+.+.+..++. + .+.+++.|+.++.+++...+++.+ + .++.+|.||+|+|. .|+..
T Consensus 215 ~~~~~~~~~~l~~~-v--~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~--~pn~~ 277 (471)
T PRK06467 215 KDIVKVFTKRIKKQ-F--NIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGR--VPNGK 277 (471)
T ss_pred HHHHHHHHHHHhhc-e--EEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecc--cccCC
Confidence 34555555555544 5 588899999998766666666543 2 35899999999998 66654
No 244
>PRK14727 putative mercuric reductase; Provisional
Probab=98.50 E-value=2.3e-06 Score=84.73 Aligned_cols=99 Identities=12% Similarity=0.192 Sum_probs=78.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
+.+|+|||+|+.|+.+|..|.+.|.+|+++++...+ .....
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l---------------------------------------~~~d~ 228 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL---------------------------------------FREDP 228 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC---------------------------------------CcchH
Confidence 468999999999999999999999999999874211 00124
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..++.++ +++++++|+.++.+++.+.+.+.++ ++.+|.||+|+|. .|+..
T Consensus 229 ~~~~~l~~~L~~~GV--~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~--~pn~~ 286 (479)
T PRK14727 229 LLGETLTACFEKEGI--EVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGR--HANTH 286 (479)
T ss_pred HHHHHHHHHHHhCCC--EEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCC--CCCcc
Confidence 566777777888888 5888999999987767777777665 5899999999998 55543
No 245
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.50 E-value=1.1e-06 Score=89.15 Aligned_cols=40 Identities=23% Similarity=0.454 Sum_probs=35.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg 44 (433)
...+||+|||||+.|+++|+.|+++|++|+|+|+.+..+|
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 3458999999999999999999999999999999864333
No 246
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.49 E-value=1.4e-06 Score=85.11 Aligned_cols=99 Identities=22% Similarity=0.304 Sum_probs=76.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|++|+.+|..|++.|.+|+++++.+.+.. +.+ ..
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~-----------------------------------~~~--~~ 179 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN-----------------------------------KLF--DE 179 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc-----------------------------------ccc--CH
Confidence 46899999999999999999999999999998764300 001 14
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
++.+++.+..++.++ ++.++++|.+++.++. . +.+.+++++.+|.||+|+|. .|+.
T Consensus 180 ~~~~~~~~~l~~~gV--~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~a~G~--~p~~ 235 (427)
T TIGR03385 180 EMNQIVEEELKKHEI--NLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVILATGI--KPNS 235 (427)
T ss_pred HHHHHHHHHHHHcCC--EEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEECCCc--cCCH
Confidence 556777777888888 5888999999986433 3 45567778999999999998 5543
No 247
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.49 E-value=3.2e-06 Score=86.13 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=33.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG 43 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G 43 (433)
.+||+|||||.+||+||..+++.|.+|+|+||...+|
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 4799999999999999999999999999999866543
No 248
>PRK14694 putative mercuric reductase; Provisional
Probab=98.49 E-value=2.4e-06 Score=84.35 Aligned_cols=99 Identities=10% Similarity=0.159 Sum_probs=77.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+++|||+|+.|+.+|..|++.|.+|+++++...+ + . ...
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l---------------------------------~----~--~~~ 218 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVL---------------------------------S----Q--EDP 218 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC---------------------------------C----C--CCH
Confidence 468999999999999999999999999999864211 0 0 124
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..++.++ +++++++|..++.+++.+.+.+.++ ++.+|.||+|+|. .|+..
T Consensus 219 ~~~~~l~~~l~~~GI--~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~--~pn~~ 276 (468)
T PRK14694 219 AVGEAIEAAFRREGI--EVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGR--TPNTE 276 (468)
T ss_pred HHHHHHHHHHHhCCC--EEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCC--CCCcC
Confidence 556677777777888 5888999999987666666766554 6999999999998 55543
No 249
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.48 E-value=2.7e-06 Score=85.89 Aligned_cols=39 Identities=23% Similarity=0.309 Sum_probs=34.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGG 44 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg 44 (433)
..+||+|||||.+||+||..+++. |.+|+|+||....||
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 357999999999999999999987 479999999876554
No 250
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.48 E-value=1.6e-06 Score=84.82 Aligned_cols=96 Identities=19% Similarity=0.244 Sum_probs=75.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+.. . -..
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~------------------------------------~--~d~ 189 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK------------------------------------L--MDA 189 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch------------------------------------h--cCH
Confidence 46899999999999999999999999999998765410 0 024
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
++.+.+.+..++.++ +++++++|.+++. . .+++.+++++.+|.|++|+|. .|+.
T Consensus 190 ~~~~~l~~~l~~~gI--~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~--~pn~ 243 (438)
T PRK13512 190 DMNQPILDELDKREI--PYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGT--HPNS 243 (438)
T ss_pred HHHHHHHHHHHhcCC--EEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCC--CcCh
Confidence 566677777777888 5888999999863 2 466667778999999999998 5554
No 251
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.48 E-value=2.6e-06 Score=84.11 Aligned_cols=100 Identities=14% Similarity=0.085 Sum_probs=77.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
+.+++|||||+.|+.+|..|++.|.+|+++++. .+. +.+ ..
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l------------------------------------~~~--d~ 220 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL------------------------------------RGF--DQ 220 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc------------------------------------ccc--CH
Confidence 468999999999999999999999999999863 220 011 25
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC---cEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG---KKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g---~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+++.+..++.++ ++++++.+..++..++...+++.++ .++.+|.|++|+|. .|+..
T Consensus 221 ~~~~~l~~~L~~~gV--~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~--~pn~~ 282 (484)
T TIGR01438 221 DCANKVGEHMEEHGV--KFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGR--DACTR 282 (484)
T ss_pred HHHHHHHHHHHHcCC--EEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecC--CcCCC
Confidence 566777777788888 5889999988887655566666554 36899999999998 55543
No 252
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.47 E-value=1.4e-06 Score=88.45 Aligned_cols=39 Identities=13% Similarity=0.091 Sum_probs=35.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg 44 (433)
..+||+|||+|.+|++||..+++.|.+|+|+||....+|
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g 66 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS 66 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC
Confidence 357999999999999999999999999999999876554
No 253
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.47 E-value=2.3e-06 Score=84.04 Aligned_cols=100 Identities=18% Similarity=0.212 Sum_probs=77.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||||++|+.+|..|.+.|.+|+++++.+.+.. . .+ ..
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~--------------------------------~---~~--~~ 191 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP--------------------------------D---SF--DK 191 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc--------------------------------h---hc--CH
Confidence 46899999999999999999999999999998654300 0 01 25
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
++.+++.+.+++.++ +++++++|++++.+++.+.+.++++ ++.+|.||+|+|. .|+.
T Consensus 192 ~~~~~l~~~l~~~gI--~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~d~vi~a~G~--~p~~ 248 (444)
T PRK09564 192 EITDVMEEELRENGV--ELHLNEFVKSLIGEDKVEGVVTDKG-EYEADVVIVATGV--KPNT 248 (444)
T ss_pred HHHHHHHHHHHHCCC--EEEcCCEEEEEecCCcEEEEEeCCC-EEEcCEEEECcCC--CcCH
Confidence 677788888888888 5889999999976544445555544 6999999999998 5543
No 254
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.46 E-value=1.8e-06 Score=81.38 Aligned_cols=100 Identities=24% Similarity=0.410 Sum_probs=77.6
Q ss_pred CcEEEECCChHHHHHHHHHHhc-------------CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEG-------------NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYP 74 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~-------------g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (433)
-+|+|+|||++|+..|-+|++. .++|+++|+.+.+-
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL------------------------------- 204 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL------------------------------- 204 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc-------------------------------
Confidence 4799999999999999999864 13899999987651
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCc-EEEeCEEEEccCCCCCCCCCCC
Q psy2398 75 MPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK-KKKYDFIAVCNGAQRVARYPNY 151 (433)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~-~~~~d~vIvAtG~~s~p~~p~i 151 (433)
+. -..++.+|.++..++.|+ .+++++.|++|+. + .|++.+++ .+.++.+|-|+|....|-.-.+
T Consensus 205 -----p~--~~~~l~~~a~~~L~~~GV--~v~l~~~Vt~v~~--~--~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 205 -----PM--FPPKLSKYAERALEKLGV--EVLLGTPVTEVTP--D--GVTLKDGEEEIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred -----cC--CCHHHHHHHHHHHHHCCC--EEEcCCceEEECC--C--cEEEccCCeeEecCEEEEcCCCcCChhhhhc
Confidence 11 136677899999999999 5999999999986 3 35566666 4999999999999544444343
No 255
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.46 E-value=3.3e-06 Score=83.84 Aligned_cols=100 Identities=17% Similarity=0.163 Sum_probs=78.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
+.+++|||+|+.|+.+|..|++.|.+|+++++. .+. . .+ ..
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l----~--------------------------------~~--d~ 222 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPL----R--------------------------------GF--DR 222 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccc----c--------------------------------cC--CH
Confidence 468999999999999999999999999999863 220 0 11 24
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..++.++ +++.++.+..++..++...+.+.+++++.+|.|++|+|. .|+..
T Consensus 223 ~~~~~l~~~l~~~GV--~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~--~pn~~ 281 (499)
T PTZ00052 223 QCSEKVVEYMKEQGT--LFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGR--KPDIK 281 (499)
T ss_pred HHHHHHHHHHHHcCC--EEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCC--CCCcc
Confidence 456777777778888 588899998888765556677777878999999999998 66654
No 256
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.46 E-value=2.6e-06 Score=86.11 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=37.5
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG 43 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G 43 (433)
|+.....+||+|||+|.+||+||..+++.|.+|+|+||....+
T Consensus 1 ~~~~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~ 43 (588)
T PRK08958 1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTR 43 (588)
T ss_pred CCCCccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 5555556899999999999999999999999999999986544
No 257
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.45 E-value=2.9e-06 Score=85.79 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=38.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
+..+||+|||+|.+|+++|..+.+.|.+|+||||.+..||...
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 52 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA 52 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 3468999999999999999999999999999999887777543
No 258
>PRK13748 putative mercuric reductase; Provisional
Probab=98.45 E-value=3.3e-06 Score=85.57 Aligned_cols=99 Identities=9% Similarity=0.154 Sum_probs=78.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|+.|+.+|..|.+.|.+|+++++...+ . . ...
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l----~---------------------------------~--~d~ 310 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLF----F---------------------------------R--EDP 310 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc----c---------------------------------c--cCH
Confidence 478999999999999999999999999999974311 0 0 124
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..++.++ +++++++|..++.+++.+.+.+.++ ++.+|.||+|+|. .|+..
T Consensus 311 ~~~~~l~~~l~~~gI--~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~--~pn~~ 368 (561)
T PRK13748 311 AIGEAVTAAFRAEGI--EVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGR--APNTR 368 (561)
T ss_pred HHHHHHHHHHHHCCC--EEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCC--CcCCC
Confidence 566777777788888 5888999999987666777776655 5999999999998 66654
No 259
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.44 E-value=3.6e-06 Score=85.56 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=34.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg 44 (433)
..+||+|||+|.+||+||..+++.|.+|+|+||....+|
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 347999999999999999999999999999999875443
No 260
>PRK07208 hypothetical protein; Provisional
Probab=98.44 E-value=5.8e-07 Score=89.25 Aligned_cols=44 Identities=25% Similarity=0.446 Sum_probs=40.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
+++||+|||||++||+||..|.++|++|+|+|+++.+||.+...
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~ 46 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTV 46 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeee
Confidence 56799999999999999999999999999999999999976543
No 261
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.44 E-value=5.1e-06 Score=83.74 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=33.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLGG 44 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~Gg 44 (433)
.+||+|||||.+||.||..+++. |.+|+|+||....|+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 47999999999999999999987 589999999876554
No 262
>PTZ00058 glutathione reductase; Provisional
Probab=98.43 E-value=3.9e-06 Score=83.80 Aligned_cols=101 Identities=17% Similarity=0.285 Sum_probs=77.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +.+ ..
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il------------------------------------~~~--d~ 278 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL------------------------------------RKF--DE 278 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc------------------------------------ccC--CH
Confidence 5789999999999999999999999999999876441 011 24
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC-CeEEEEEcc-CcEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVELSN-GKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~-~~~~v~~~~-g~~~~~d~vIvAtG~~s~p~~p 149 (433)
++.+.+.+..++.++ ++++++.|.+++.++ +...+...+ +.++.+|.|++|+|. .|+..
T Consensus 279 ~i~~~l~~~L~~~GV--~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr--~Pn~~ 339 (561)
T PTZ00058 279 TIINELENDMKKNNI--NIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGR--SPNTE 339 (561)
T ss_pred HHHHHHHHHHHHCCC--EEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCC--CCCcc
Confidence 556777777777788 588999999998753 345555444 346999999999997 55543
No 263
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.43 E-value=5.6e-06 Score=83.78 Aligned_cols=39 Identities=13% Similarity=0.280 Sum_probs=34.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG 43 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G 43 (433)
...+||+|||+|.+||+||..+++.|.+|+|+||....+
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~ 48 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTR 48 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence 345799999999999999999999999999999975433
No 264
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.42 E-value=6.9e-07 Score=87.25 Aligned_cols=58 Identities=26% Similarity=0.327 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCe--EEEEEccCcEEEeCEEEEccCCC
Q psy2398 83 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI--WEVELSNGKKKKYDFIAVCNGAQ 143 (433)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~--~~v~~~~g~~~~~d~vIvAtG~~ 143 (433)
..+..+.++|.+.+.+.|+. +..+ +|+.+..+.++ ..|++.+|.++++|.||-|||..
T Consensus 151 lDR~~fd~~L~~~A~~~Gv~--~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~ 210 (454)
T PF04820_consen 151 LDRAKFDQFLRRHAEERGVE--VIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRR 210 (454)
T ss_dssp EEHHHHHHHHHHHHHHTT-E--EEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG
T ss_pred EeHHHHHHHHHHHHhcCCCE--EEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCcc
Confidence 35899999999999999984 4444 68888877444 36778889899999999999974
No 265
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.41 E-value=4e-06 Score=83.40 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=33.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg 44 (433)
.+||+|||+|.+|++||..+++ |.+|+|+||.+..||
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCC
Confidence 4799999999999999999977 899999999876554
No 266
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.41 E-value=2.9e-06 Score=88.63 Aligned_cols=101 Identities=14% Similarity=0.185 Sum_probs=79.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+- . .. -..
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll---~---------------------------------~~-ld~ 182 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM---A---------------------------------KQ-LDQ 182 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh---h---------------------------------hh-cCH
Confidence 4689999999999999999999999999999865430 0 00 023
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
...+.+.+..+..++ ++++++.++++..++....|++.+|+++.+|.||+|+|. .|+.
T Consensus 183 ~~~~~l~~~l~~~GV--~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~--~Pn~ 240 (785)
T TIGR02374 183 TAGRLLQRELEQKGL--TFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGI--RPND 240 (785)
T ss_pred HHHHHHHHHHHHcCC--EEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCC--CcCc
Confidence 455667777778888 589999999887655556678888889999999999998 5554
No 267
>PRK12839 hypothetical protein; Provisional
Probab=98.40 E-value=5.4e-06 Score=83.40 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=39.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~ 48 (433)
+..+||+|||+|.+|+++|..+++.|.+|+|+||...+||....
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~ 49 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAW 49 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccc
Confidence 35689999999999999999999999999999999888876443
No 268
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.40 E-value=5.7e-06 Score=81.65 Aligned_cols=101 Identities=19% Similarity=0.255 Sum_probs=75.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.+.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ..
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------~--~d 209 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP------------------------------------L--ED 209 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc------------------------------------c--hh
Confidence 357899999999999999999999999999998765410 0 12
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC-eEEEEEcc--CcEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-IWEVELSN--GKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~-~~~v~~~~--g~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+.+.+..++. + +++++++|.+++.+++ ..+++..+ +.++.+|.|++|+|. .|+..
T Consensus 210 ~~~~~~~~~~l~~~-I--~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~--~p~~~ 271 (460)
T PRK06292 210 PEVSKQAQKILSKE-F--KIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGR--RPNTD 271 (460)
T ss_pred HHHHHHHHHHHhhc-c--EEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCC--ccCCC
Confidence 45566666666665 6 5888999999987543 34443323 346899999999998 66665
No 269
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.39 E-value=9.1e-06 Score=88.45 Aligned_cols=40 Identities=28% Similarity=0.405 Sum_probs=37.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV 45 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~ 45 (433)
...||+|||+|.+|++||..+++.|.+|+|+||.+..||.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 4589999999999999999999999999999999888774
No 270
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.39 E-value=5.9e-06 Score=83.63 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=33.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg 44 (433)
..+||+|||||.+|++||..+++. .+|+|+||....+|
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 458999999999999999999986 89999999765443
No 271
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.38 E-value=4.4e-07 Score=89.68 Aligned_cols=43 Identities=19% Similarity=0.337 Sum_probs=39.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
++||+|||||++||+||..|+++|++|+|+||+..+||.....
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~ 45 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTF 45 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEE
Confidence 5899999999999999999999999999999999999966554
No 272
>KOG1335|consensus
Probab=98.38 E-value=3.4e-06 Score=76.70 Aligned_cols=102 Identities=21% Similarity=0.279 Sum_probs=83.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+++++|||||..||..+.-..++|.+|+++|-.+++|+.+
T Consensus 209 ~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~m-------------------------------------- 250 (506)
T KOG1335|consen 209 EVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVM-------------------------------------- 250 (506)
T ss_pred hCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcccc--------------------------------------
Confidence 346799999999999999999999999999999998887642
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCeEEEEEcc-----CcEEEeCEEEEccCCCCCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSN-----GKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~v~~~~-----g~~~~~d~vIvAtG~~s~p~~ 148 (433)
..++...++...++.++ .+.++++|..++++ ++...|++.+ .+++++|.+++|+|. .|..
T Consensus 251 D~Eisk~~qr~L~kQgi--kF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGR--rP~t 316 (506)
T KOG1335|consen 251 DGEISKAFQRVLQKQGI--KFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGR--RPFT 316 (506)
T ss_pred CHHHHHHHHHHHHhcCc--eeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccC--cccc
Confidence 14566777777888888 58899999999988 4477777665 246899999999997 4443
No 273
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.36 E-value=1.6e-05 Score=79.80 Aligned_cols=43 Identities=21% Similarity=0.330 Sum_probs=38.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
..+||+|||+| +|++||..+++.|.+|+|+||.+.+||+....
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~ 57 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARS 57 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCc
Confidence 46899999999 89999999999999999999998888866544
No 274
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.35 E-value=1.5e-06 Score=88.68 Aligned_cols=39 Identities=10% Similarity=0.145 Sum_probs=35.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG 43 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G 43 (433)
...+||+|||||.+||+||..+++.|.+|+|+||.+..+
T Consensus 3 ~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~ 41 (657)
T PRK08626 3 IIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR 41 (657)
T ss_pred ceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 456899999999999999999999999999999976543
No 275
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.35 E-value=5.3e-06 Score=86.87 Aligned_cols=101 Identities=19% Similarity=0.250 Sum_probs=79.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+++|||||+.|+.+|..|++.|.+|+|+++.+.+-. .. -..
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~------------------------------------~~-ld~ 187 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA------------------------------------EQ-LDQ 187 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh------------------------------------hh-cCH
Confidence 46899999999999999999999999999998764300 00 124
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEe--CCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQY--EDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~--~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
+..+.+.+..++.++ ++++++.+++|..+ +....+++.+|+.+.+|.||+|+|. .|+.
T Consensus 188 ~~~~~l~~~L~~~GV--~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~--rPn~ 247 (847)
T PRK14989 188 MGGEQLRRKIESMGV--RVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGI--RPQD 247 (847)
T ss_pred HHHHHHHHHHHHCCC--EEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCc--ccCc
Confidence 556777788888888 59999999999764 2345677888889999999999998 5554
No 276
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.33 E-value=6.1e-06 Score=77.78 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=33.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLG 43 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~G 43 (433)
+.+||++||||+.|.+.+..|++. .++|.|+||.+.++
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A 41 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVA 41 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcch
Confidence 468999999999999999999987 57999999988754
No 277
>PLN02546 glutathione reductase
Probab=98.33 E-value=8.2e-06 Score=81.57 Aligned_cols=102 Identities=9% Similarity=0.140 Sum_probs=77.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
...+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . -.
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~------------------------------------~--~d 292 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR------------------------------------G--FD 292 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc------------------------------------c--cC
Confidence 357999999999999999999999999999998765410 0 12
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCeEEEEEccCcEEEeCEEEEccCCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p 149 (433)
.++.+++.+..++.++ +++.++++..+..+ ++...+.+.++....+|.||+|+|. .|+..
T Consensus 293 ~~~~~~l~~~L~~~GV--~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~--~Pnt~ 353 (558)
T PLN02546 293 EEVRDFVAEQMSLRGI--EFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGR--KPNTK 353 (558)
T ss_pred HHHHHHHHHHHHHCCc--EEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeecc--ccCCC
Confidence 4556677777777888 58889999999764 4445565555544458999999998 55543
No 278
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.31 E-value=2.4e-06 Score=81.53 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=33.0
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG 43 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G 43 (433)
.+|+|||||.+|+.+|..|++.|++|+|||+++..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 489999999999999999999999999999877654
No 279
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.30 E-value=9.3e-06 Score=82.40 Aligned_cols=102 Identities=18% Similarity=0.127 Sum_probs=75.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
+.+|+|||||+.|+..|..|.+.|.+|+++|+.+.+.. . -..
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~------------------------------------~--~d~ 353 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP------------------------------------L--LDA 353 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc------------------------------------c--CCH
Confidence 46899999999999999999999999999999875410 0 124
Q ss_pred HHHHHHHHHH-HHcCCCcceEeCcEEEEEEEeCCe--EEEEEcc-------C--------cEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYA-KKFDVYNHSIFNTEVINLEQYEDI--WEVELSN-------G--------KKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~-~~~~~~~~i~~~~~V~~v~~~~~~--~~v~~~~-------g--------~~~~~d~vIvAtG~~s~p~~ 148 (433)
++.+++.... +..++ .++.++.|..++.+++. ..+.+.+ + .++.+|.|++|+|. .|+.
T Consensus 354 eis~~l~~~ll~~~GV--~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr--~Pnt 429 (659)
T PTZ00153 354 DVAKYFERVFLKSKPV--RVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGR--KPNT 429 (659)
T ss_pred HHHHHHHHHHhhcCCc--EEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECc--ccCC
Confidence 4556666543 45677 58999999999875432 4554321 1 26899999999998 6665
Q ss_pred CC
Q psy2398 149 PN 150 (433)
Q Consensus 149 p~ 150 (433)
..
T Consensus 430 ~~ 431 (659)
T PTZ00153 430 NN 431 (659)
T ss_pred cc
Confidence 43
No 280
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.30 E-value=7.1e-06 Score=79.77 Aligned_cols=100 Identities=20% Similarity=0.342 Sum_probs=81.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..++||||+|+.|+.+|..|+++|++|+++|+.+.+++... . .
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~-----------------------------------~--~ 178 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL-----------------------------------D--P 178 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh-----------------------------------h--H
Confidence 37999999999999999999999999999999887643210 0 5
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEE---EEEccCcEEEeCEEEEccCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE---VELSNGKKKKYDFIAVCNGAQRVAR 147 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~---v~~~~g~~~~~d~vIvAtG~~s~p~ 147 (433)
.+.+.+.+..+.+++ .+++++.+..|+...+... +...++..+.+|.+++++|. .|+
T Consensus 179 ~~~~~~~~~l~~~gi--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~--~p~ 238 (415)
T COG0446 179 EVAEELAELLEKYGV--ELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGE--RPN 238 (415)
T ss_pred HHHHHHHHHHHHCCc--EEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecc--ccc
Confidence 677888888888887 5888999999987644322 56667778999999999998 554
No 281
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.28 E-value=3.7e-07 Score=66.28 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=32.3
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCcee
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHY 209 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~ 209 (433)
+++|||+|.+|+|+|..|++.+.+||++.|++...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58999999999999999999999999999998643
No 282
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.27 E-value=4e-06 Score=79.50 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=32.6
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL 42 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~ 42 (433)
.||+|||||++|+.+|..|++.|++|+|+|+++..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 69999999999999999999999999999987654
No 283
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.26 E-value=8.4e-06 Score=79.71 Aligned_cols=58 Identities=12% Similarity=0.080 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeC-CeEE--EEEc-cCcEEEeCEEEEccCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWE--VELS-NGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~-~~~~--v~~~-~g~~~~~d~vIvAtG~~s 144 (433)
...+.+.+.+.+++.++ .++++++|+++..+. +++. +... ++..+.++.||+|||.++
T Consensus 122 g~~l~~~L~~~a~~~Gv--~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 122 GKALTNALYSSAERLGV--EIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLG 183 (432)
T ss_pred HHHHHHHHHHHHHHcCC--EEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcc
Confidence 45677888888888887 699999999998752 3333 2332 334689999999999854
No 284
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.25 E-value=1.1e-05 Score=78.50 Aligned_cols=91 Identities=21% Similarity=0.411 Sum_probs=72.1
Q ss_pred CcEEEECCChHHHHHHHHHHh--------------cCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSE--------------GNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDY 73 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~--------------~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (433)
.+|+|||||+.|+..|..|.+ .+.+|+++++.+.+..
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~----------------------------- 224 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG----------------------------- 224 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc-----------------------------
Confidence 489999999999999999876 3688999998765410
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCC
Q psy2398 74 PMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 142 (433)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~ 142 (433)
.+ ...+.+++.+..++.++ +++++++|.+++. + .+.+++|+++.+|.||+|+|.
T Consensus 225 -------~~--~~~~~~~~~~~L~~~gV--~v~~~~~v~~v~~--~--~v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 225 -------SF--DQALRKYGQRRLRRLGV--DIRTKTAVKEVLD--K--EVVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred -------cC--CHHHHHHHHHHHHHCCC--EEEeCCeEEEEeC--C--EEEECCCCEEEccEEEEccCC
Confidence 11 24566777888888888 5888999998864 3 366778888999999999997
No 285
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.25 E-value=4.3e-05 Score=77.34 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=37.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~ 48 (433)
.+||+|||+|++|+++|..+++.|.+|+|+||...+||....
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~ 57 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTAT 57 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccc
Confidence 479999999999999999999999999999998888876543
No 286
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.24 E-value=3.5e-06 Score=80.43 Aligned_cols=134 Identities=15% Similarity=0.140 Sum_probs=75.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCC-CCccccceEe---ecCCCccc----CCC--CCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQAS-CGRVYPSLHL---ISPKFNTQ----VPD--YPM 75 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~-~~~~~~~~~~---~~~~~~~~----~~~--~~~ 75 (433)
..+||+|||||.+|+.||.+.++.|.++.++--..+.=|.+ ..+| -+..-++... +.-...+. ... +.+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~m-sCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~ 81 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEM-SCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRM 81 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeec-ccccccCCcccceeEEeehhccchHHHhhhhcCCchhh
Confidence 34999999999999999999999999998887544322221 1111 0011111100 00000000 000 000
Q ss_pred CCCC--C------CCCCHHHHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeCC--eEEEEEccCcEEEeCEEEEccCCC
Q psy2398 76 PDNY--P------VYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYED--IWEVELSNGKKKKYDFIAVCNGAQ 143 (433)
Q Consensus 76 ~~~~--~------~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~~--~~~v~~~~g~~~~~d~vIvAtG~~ 143 (433)
.+.. | ....+..+.+.++...+.. ++ -.++..|+.+...++ .+-|.+.+|..+.|+.||++||.+
T Consensus 82 LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL---~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 82 LNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNL---HLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred ccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCc---eehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 0000 1 1123445566666666554 33 234667777666433 467888899999999999999974
No 287
>PLN02815 L-aspartate oxidase
Probab=98.24 E-value=1.5e-05 Score=80.29 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=33.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg 44 (433)
.+||+|||+|.+||+||..+++.| +|+|+||....||
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 479999999999999999999999 9999999887654
No 288
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.23 E-value=2.2e-05 Score=79.43 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=33.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG 43 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G 43 (433)
+.||+|||+|.+||+||..+++.|.+|+|+||....|
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~ 39 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 4699999999999999999999999999999987654
No 289
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.22 E-value=1.5e-05 Score=79.40 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=30.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
...||+|||+|.+||+||..++ +.+|+|+||...
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 4589999999999999999997 569999999875
No 290
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.22 E-value=1.6e-06 Score=81.97 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=38.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~ 48 (433)
++||+|||||++|+++|..|++.|.+|+|+|+++.+||.+..
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~ 42 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYD 42 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceee
Confidence 369999999999999999999999999999999999996543
No 291
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.20 E-value=1.5e-06 Score=85.73 Aligned_cols=41 Identities=32% Similarity=0.515 Sum_probs=37.5
Q ss_pred CcEEEECCChHHHHHHHHHHhcC--CCeEEEccCCCCCCcccC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGN--INYDLYEMESDLGGVWNS 48 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g--~~v~v~e~~~~~Gg~~~~ 48 (433)
++|+|||||++||+||+.|++.| ++|+|+|+++.+||....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t 43 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT 43 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence 47999999999999999999987 899999999999997654
No 292
>PLN02268 probable polyamine oxidase
Probab=98.20 E-value=1.6e-06 Score=84.99 Aligned_cols=41 Identities=29% Similarity=0.537 Sum_probs=37.8
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~ 48 (433)
.+|+|||||.+||+||+.|.+.|++|+|+|+++.+||....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t 41 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHT 41 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeee
Confidence 47999999999999999999999999999999999997543
No 293
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.20 E-value=1.1e-05 Score=80.87 Aligned_cols=39 Identities=13% Similarity=0.234 Sum_probs=34.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg 44 (433)
+..+||+|||+|.+|++||..+.+ |.+|+|+||.+..||
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~gg 45 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLKTS 45 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCCCC
Confidence 456899999999999999999964 999999999886555
No 294
>PLN02568 polyamine oxidase
Probab=98.20 E-value=1.9e-06 Score=85.83 Aligned_cols=44 Identities=25% Similarity=0.434 Sum_probs=39.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcC-----CCeEEEccCCCCCCcccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGN-----INYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g-----~~v~v~e~~~~~Gg~~~~~ 49 (433)
+.+||+|||||++||+||..|++.| ++|+|+|+++.+||.+...
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~ 52 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTS 52 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEE
Confidence 4589999999999999999999887 8999999999999976543
No 295
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.17 E-value=1.9e-06 Score=85.16 Aligned_cols=42 Identities=26% Similarity=0.430 Sum_probs=38.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhc----CCCeEEEccCCCCCCcccC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG----NINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~----g~~v~v~e~~~~~Gg~~~~ 48 (433)
++||+|||||++||+||..|.++ |++|+|+|+++.+||....
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t 47 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT 47 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence 46999999999999999999998 9999999999999997654
No 296
>PLN02576 protoporphyrinogen oxidase
Probab=98.17 E-value=2.3e-06 Score=85.37 Aligned_cols=45 Identities=20% Similarity=0.348 Sum_probs=40.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhc-CCCeEEEccCCCCCCcccCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEG-NINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~-g~~v~v~e~~~~~Gg~~~~~ 49 (433)
..++||+|||||++||++|+.|.+. |++|+|+|+++.+||.....
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~ 55 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSV 55 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEe
Confidence 3567999999999999999999999 99999999999999975543
No 297
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.16 E-value=3.6e-05 Score=78.03 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=30.7
Q ss_pred EEEECCChHHHHHHHHHHhcCCCeEEEccCCCC
Q psy2398 10 LCIIGGGPLGIGLGRELSEGNINYDLYEMESDL 42 (433)
Q Consensus 10 v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~ 42 (433)
|+|||+|.+||+||..+++.|.+|+|+||.+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 689999999999999999999999999998744
No 298
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.15 E-value=2.8e-06 Score=75.64 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=40.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
++|++|||||.+|+.+|..|+++|.+|.|+||++++||.+...
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde 43 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDE 43 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccc
Confidence 4799999999999999999999999999999999999988765
No 299
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.12 E-value=6e-05 Score=75.61 Aligned_cols=43 Identities=23% Similarity=0.328 Sum_probs=35.9
Q ss_pred CCCC-CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC
Q psy2398 1 MKYK-NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44 (433)
Q Consensus 1 M~~~-~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg 44 (433)
|+++ ...+||+|||+|.+|++||..+++. .+|+|+||....||
T Consensus 1 ~~~~~~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 1 MNTSPEHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred CCCCccccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 4443 3457999999999999999999986 89999999876655
No 300
>PLN02676 polyamine oxidase
Probab=98.12 E-value=3.8e-06 Score=82.96 Aligned_cols=44 Identities=27% Similarity=0.455 Sum_probs=39.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCCCCCcccC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESDLGGVWNS 48 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~~Gg~~~~ 48 (433)
...+||+|||||++||+||.+|+++|. +|+|+|+++.+||.+..
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~ 68 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRK 68 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCccee
Confidence 456899999999999999999999998 69999999999986543
No 301
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=3e-06 Score=80.92 Aligned_cols=41 Identities=32% Similarity=0.579 Sum_probs=38.3
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~ 48 (433)
++|+|+|||.+||+||+.|+++|++|+|+|+++.+||....
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s 41 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVAS 41 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeee
Confidence 47999999999999999999999999999999999997654
No 302
>PRK10262 thioredoxin reductase; Provisional
Probab=98.10 E-value=3.1e-05 Score=72.61 Aligned_cols=98 Identities=15% Similarity=0.125 Sum_probs=70.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||+|..|+.+|..|++.+.+|+++++.+.+. ...
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~----------------------------------------~~~ 185 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR----------------------------------------AEK 185 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC----------------------------------------CCH
Confidence 4689999999999999999999999999999865320 012
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC-eEEEEEcc------CcEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-IWEVELSN------GKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~-~~~v~~~~------g~~~~~d~vIvAtG~~s~p~~ 148 (433)
.+.+.+.+..+..++ ++..++.+++++.++. .-.|++.+ .+++.+|.||+|+|. .|+.
T Consensus 186 ~~~~~~~~~l~~~gV--~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~--~p~~ 250 (321)
T PRK10262 186 ILIKRLMDKVENGNI--ILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH--SPNT 250 (321)
T ss_pred HHHHHHHhhccCCCe--EEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCC--ccCh
Confidence 234455555556666 5788999999976532 22344332 136899999999998 5554
No 303
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.10 E-value=3.3e-06 Score=83.46 Aligned_cols=41 Identities=34% Similarity=0.417 Sum_probs=36.7
Q ss_pred CcEEEECCChHHHHHHHHHHhc------CCCeEEEccCCCCCCcccC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEG------NINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~------g~~v~v~e~~~~~Gg~~~~ 48 (433)
++|+|||||++||+||+.|.+. |.+|+|+|+++.+||....
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T 48 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS 48 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEE
Confidence 5899999999999999999986 3799999999999997544
No 304
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.07 E-value=4.2e-06 Score=83.37 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=38.7
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
.||+|||||++||+||..|++.|++|+|+|+++.+||.....
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~ 43 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTF 43 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccee
Confidence 689999999999999999999999999999999999866543
No 305
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.06 E-value=4e-05 Score=71.79 Aligned_cols=58 Identities=22% Similarity=0.430 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCC-eEEEEEccCcEEEeCEEEEccCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-IWEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~-~~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
-..+.+-+.++.+.+|. .++|+++|+.++..++ ...+.+++|..+.+|+||+|.|..+
T Consensus 172 l~~vvkni~~~l~~~G~--ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 172 LPKVVKNIREYLESLGG--EIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred hHHHHHHHHHHHHhcCc--EEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcch
Confidence 35667778888888887 6999999999998654 4677888898999999999999854
No 306
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.05 E-value=1.4e-05 Score=74.10 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=29.7
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.|+|||+|.+|+..|..|.+.+.+|+++.+..
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 58999999999999999999999999999764
No 307
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.05 E-value=0.00031 Score=66.98 Aligned_cols=57 Identities=11% Similarity=0.060 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEE-EEEccC--cEEEeCEEEEccCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELSNG--KKKKYDFIAVCNGAQ 143 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~-v~~~~g--~~~~~d~vIvAtG~~ 143 (433)
...+.+.+.+.+++.|. .+..+++|.++..+++.++ +.+.++ .++.+|.||+|+|++
T Consensus 262 G~RL~~aL~~~~~~~Gg--~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 262 GIRLEEALKHRFEQLGG--VMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHHHHHHCCC--EEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 45666777777777777 4777889999988766555 454554 479999999999996
No 308
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.04 E-value=4.2e-06 Score=83.59 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=35.5
Q ss_pred EEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 10 LCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 10 v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
|+|||||++||+||..|++.|++|+|+|+++.+||...
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~ 38 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAG 38 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceE
Confidence 68999999999999999999999999999999998643
No 309
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.03 E-value=5.8e-06 Score=82.27 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=37.7
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~ 48 (433)
+||+|||||.+||++|..|+++|.+|+|+||++.+||....
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~ 41 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGY 41 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeE
Confidence 58999999999999999999999999999999999885543
No 310
>KOG2404|consensus
Probab=98.02 E-value=2.6e-05 Score=69.43 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=35.8
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
..|+|||+|.+||+++..+...|-.|+++|+...+||.-.
T Consensus 10 spvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 10 SPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred CcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence 4699999999999999999998778999999999998543
No 311
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.00 E-value=7.3e-06 Score=80.76 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=37.1
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~ 48 (433)
+|+|||||++||++|..|.++|++|+|+|+++.+||.+..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAA 40 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcce
Confidence 5899999999999999999999999999999999997643
No 312
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.99 E-value=2.5e-05 Score=78.86 Aligned_cols=33 Identities=30% Similarity=0.357 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHH----hcCCCeEEEccCCC
Q psy2398 9 KLCIIGGGPLGIGLGRELS----EGNINYDLYEMESD 41 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~----~~g~~v~v~e~~~~ 41 (433)
||+|||||.+||+||..++ +.|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999999764
No 313
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.99 E-value=7e-05 Score=71.56 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=67.3
Q ss_pred CCcEEEECCChHHHHHHHHHHh----cC--CCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSE----GN--INYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYP 80 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~----~g--~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (433)
..+|+|||+|++|+.+|..|.+ .| .+|+++. .+.+. +
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~-~~~~l------------------------------------~ 187 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA-GASLL------------------------------------P 187 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEe-CCccc------------------------------------c
Confidence 3589999999999999999975 34 4788883 22210 0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCC
Q psy2398 81 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA 142 (433)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~ 142 (433)
. ....+.+.+.+..++.++ ++..+++|..++. + .+.+.++.++.+|.||+|+|.
T Consensus 188 ~--~~~~~~~~~~~~l~~~gV--~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 188 G--FPAKVRRLVLRLLARRGI--EVHEGAPVTRGPD--G--ALILADGRTLPADAILWATGA 241 (364)
T ss_pred c--CCHHHHHHHHHHHHHCCC--EEEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccCC
Confidence 0 123455667777788888 5888999988863 2 566777888999999999998
No 314
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.95 E-value=8.4e-05 Score=74.26 Aligned_cols=95 Identities=20% Similarity=0.230 Sum_probs=68.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||||+.|+.+|..|++.+.+|+++++.+.+. .
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~----------------------------------------~-- 389 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK----------------------------------------A-- 389 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC----------------------------------------h--
Confidence 4689999999999999999999999999999765330 0
Q ss_pred HHHHHHHHHHHH-cCCCcceEeCcEEEEEEEeCCeE-EEEEcc---C--cEEEeCEEEEccCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDIW-EVELSN---G--KKKKYDFIAVCNGAQRVARYP 149 (433)
Q Consensus 87 ~~~~~l~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~-~v~~~~---g--~~~~~d~vIvAtG~~s~p~~p 149 (433)
...+....+. .++ ++++++.++++..+++.. .|++.+ + .++.+|.|++|+|. .|+..
T Consensus 390 --~~~l~~~l~~~~gV--~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~--~Pn~~ 453 (515)
T TIGR03140 390 --DKVLQDKLKSLPNV--DILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGL--VPNTE 453 (515)
T ss_pred --hHHHHHHHhcCCCC--EEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCC--cCCch
Confidence 1223333433 467 588899999997653332 355433 2 35899999999998 55543
No 315
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.94 E-value=2.4e-05 Score=83.12 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=32.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
.+||+|||||.+||.||..+++.|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 47999999999999999999999999999999764
No 316
>KOG1298|consensus
Probab=97.93 E-value=0.0001 Score=67.38 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=32.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+...||+|||||.+|.+.|..|.+.|-+|+|+||.-
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 345799999999999999999999999999999853
No 317
>PLN02529 lysine-specific histone demethylase 1
Probab=97.93 E-value=1.4e-05 Score=81.71 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=38.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
..++|+|||||++||+||..|++.|++|+|+|+++.+||...
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~ 200 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVY 200 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCcee
Confidence 457999999999999999999999999999999988887644
No 318
>KOG1336|consensus
Probab=97.88 E-value=0.00013 Score=68.77 Aligned_cols=105 Identities=22% Similarity=0.265 Sum_probs=84.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
...|+++|+|..|+.+|..|...+.+|++|++.+.+ ++. .-..
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~--------------------------------~~~-----lf~~ 255 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL--------------------------------LPR-----LFGP 255 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccc--------------------------------hhh-----hhhH
Confidence 357999999999999999999999999999987632 000 1135
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEe--CCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQY--EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYS 152 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~--~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~ 152 (433)
.+.+.+..+.++.++ ++..++.+.+++.+ +.--.|.+.++.++.+|.||+++|. .|+.+.+.
T Consensus 256 ~i~~~~~~y~e~kgV--k~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~--~p~t~~~~ 319 (478)
T KOG1336|consen 256 SIGQFYEDYYENKGV--KFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGI--KPNTSFLE 319 (478)
T ss_pred HHHHHHHHHHHhcCe--EEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecc--cccccccc
Confidence 677888888888888 58889999888876 3445677888999999999999999 78777655
No 319
>PLN02487 zeta-carotene desaturase
Probab=97.82 E-value=2.4e-05 Score=78.10 Aligned_cols=41 Identities=32% Similarity=0.530 Sum_probs=38.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
+++|+|||||++||++|..|.+.|++|+|+|+.+.+||.+.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVG 115 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCcee
Confidence 46999999999999999999999999999999999998654
No 320
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.82 E-value=2.7e-05 Score=77.66 Aligned_cols=43 Identities=19% Similarity=0.365 Sum_probs=36.8
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCC
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg 44 (433)
|..-+...||+|||+| +|++||.++++.|.+|+|+||.+..||
T Consensus 1 ~~~~d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 1 MSAWDEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred CCCCCCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 3433356899999999 999999999999999999999887664
No 321
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.81 E-value=2.2e-05 Score=77.44 Aligned_cols=40 Identities=35% Similarity=0.563 Sum_probs=36.9
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~ 48 (433)
+|+|||||++|+++|..|.+.|++|+|+|+++.+||....
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 40 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGS 40 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeee
Confidence 5899999999999999999999999999999999986544
No 322
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.80 E-value=2.8e-05 Score=79.97 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=38.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
...+|+|||||++|+++|+.|.+.|++|+|+|+++.+||...
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~ 278 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVK 278 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCccc
Confidence 357999999999999999999999999999999999988643
No 323
>KOG2844|consensus
Probab=97.79 E-value=0.00015 Score=70.92 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCeEEEEEccCcEEEeCEEEEccCCCC
Q psy2398 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
......+.+.+...|+++|. .|..+..|++|.-. ++.+-|.|..| .+++.+||.|+|.|.
T Consensus 183 ~~DP~~lC~ala~~A~~~GA--~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 183 VMDPAGLCQALARAASALGA--LVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred ccCHHHHHHHHHHHHHhcCc--EEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHH
Confidence 45577788889999999998 58889999999765 67778888877 499999999999864
No 324
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.77 E-value=2.9e-05 Score=75.22 Aligned_cols=44 Identities=18% Similarity=0.082 Sum_probs=41.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
+.+||+|||+|.+|+.+|..|++.|.+|+++|+++..||.|...
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~ 46 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASL 46 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccc
Confidence 56999999999999999999999999999999999999988754
No 325
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.73 E-value=4e-05 Score=77.21 Aligned_cols=40 Identities=25% Similarity=0.467 Sum_probs=36.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC--CCCCc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES--DLGGV 45 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~--~~Gg~ 45 (433)
..+||+|||+|.+||+||..+++.|.+|+|+||.+ ..||.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~ 44 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQ 44 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCc
Confidence 56899999999999999999999999999999998 56664
No 326
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.73 E-value=0.00013 Score=68.42 Aligned_cols=128 Identities=13% Similarity=0.162 Sum_probs=64.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCC--CeEEEccCCCCCCcccCCCCCCccccce--EeecCCCcccCCCCCCC-----
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMESDLGGVWNSQASCGRVYPSL--HLISPKFNTQVPDYPMP----- 76 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~~~Gg~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----- 76 (433)
..++|+|||||.++..++..|.+.+- +|+++-|+..+ .... +..+ .+..|..+..|...+..
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~---~~~d------~s~f~ne~f~P~~v~~f~~l~~~~R~~~ 259 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF---FPMD------DSPFVNEIFSPEYVDYFYSLPDEERREL 259 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS----EB----------CCHHGGGSHHHHHHHHTS-HHHHHHH
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc---CCCc------cccchhhhcCchhhhhhhcCCHHHHHHH
Confidence 45799999999999999999999864 79999887643 0000 0000 11111111111111100
Q ss_pred --CC---CCCCCCHHHHHHHHHH-HHHHc-C-CCcceEeCcEEEEEEEeC-CeEEEEEcc-----CcEEEeCEEEEccCC
Q psy2398 77 --DN---YPVYPNHSMMLDYLRS-YAKKF-D-VYNHSIFNTEVINLEQYE-DIWEVELSN-----GKKKKYDFIAVCNGA 142 (433)
Q Consensus 77 --~~---~~~~~~~~~~~~~l~~-~~~~~-~-~~~~i~~~~~V~~v~~~~-~~~~v~~~~-----g~~~~~d~vIvAtG~ 142 (433)
.. ...-++...+.+..+. |.++. + -+-++..+++|+.++.++ ++|++++.+ ..++.+|.||+|||-
T Consensus 260 l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 260 LREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp HHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred HHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence 00 0011222222111111 11121 1 122466799999999986 699999876 235899999999995
No 327
>PLN02612 phytoene desaturase
Probab=97.72 E-value=4.6e-05 Score=76.81 Aligned_cols=41 Identities=29% Similarity=0.413 Sum_probs=37.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW 46 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~ 46 (433)
..++|+|||||++||++|.+|.+.|++|+++|+++.+||..
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~ 132 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKV 132 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcc
Confidence 45789999999999999999999999999999998888853
No 328
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.71 E-value=0.00043 Score=62.22 Aligned_cols=40 Identities=23% Similarity=0.437 Sum_probs=35.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC--CCCc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD--LGGV 45 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~--~Gg~ 45 (433)
...||+|||||.+||.+|.+|++.|.+|+++|+... +||+
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ 45 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ 45 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence 457999999999999999999999999999997653 6664
No 329
>KOG2853|consensus
Probab=97.69 E-value=0.00055 Score=61.77 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhc----CCCeEEEccCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG----NINYDLYEMESD 41 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~----g~~v~v~e~~~~ 41 (433)
..||+|||||-.|.+.|.-|.++ |++|+|+|+.+.
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 46999999999999999999875 799999999874
No 330
>PLN03000 amine oxidase
Probab=97.68 E-value=5.9e-05 Score=77.78 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=39.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~ 48 (433)
...+|+|||||++|+.+|..|.+.|++|+|+|+++.+||.+..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T 225 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYT 225 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcce
Confidence 3579999999999999999999999999999999999997653
No 331
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.68 E-value=0.00032 Score=70.22 Aligned_cols=94 Identities=18% Similarity=0.242 Sum_probs=66.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
.++|+|||||.+|+.+|..|+..+.+|+++++.+.+. . .
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~---------------------------------------~-~- 389 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK---------------------------------------A-D- 389 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc---------------------------------------c-c-
Confidence 3689999999999999999999999999999765430 0 0
Q ss_pred HHHHHHHHHHHH-cCCCcceEeCcEEEEEEEeCCeE-EEEEc---cC--cEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDIW-EVELS---NG--KKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~-~v~~~---~g--~~~~~d~vIvAtG~~s~p~~ 148 (433)
.++...... .++ ++++++.++++..+++.. .+++. ++ .++.+|.|++|+|. .|+.
T Consensus 390 ---~~l~~~l~~~~gI--~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~--~p~~ 451 (517)
T PRK15317 390 ---QVLQDKLRSLPNV--TIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGL--VPNT 451 (517)
T ss_pred ---HHHHHHHhcCCCc--EEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECC--ccCc
Confidence 223333333 466 588899999998753332 24433 23 35899999999998 5543
No 332
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.68 E-value=0.00023 Score=67.56 Aligned_cols=33 Identities=15% Similarity=0.104 Sum_probs=30.1
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCC-eEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNIN-YDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~-v~v~e~~~ 40 (433)
.+|+|||+|+.|+.+|..|.+.|.+ |+++++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 5899999999999999999999997 99999754
No 333
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.65 E-value=0.00055 Score=67.48 Aligned_cols=95 Identities=14% Similarity=0.086 Sum_probs=66.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..+|+|||+|..|+.+|..|.+.|. +|+++++++.. ..+..
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~--------------------------------------~~~~~ 314 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGRE--------------------------------------EMPAS 314 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc--------------------------------------cCCCC
Confidence 4689999999999999999999998 89999976421 00101
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCe---EEEEE-----------------ccCcEEEeCEEEEccCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI---WEVEL-----------------SNGKKKKYDFIAVCNGAQRV 145 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~---~~v~~-----------------~~g~~~~~d~vIvAtG~~s~ 145 (433)
.. ..+.+++.|+ ++.+++.+..+..+++. .++.. .++.++.+|.||+|+|. .
T Consensus 315 ~~----~~~~~~~~GV--~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~--~ 386 (457)
T PRK11749 315 EE----EVEHAKEEGV--EFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQ--T 386 (457)
T ss_pred HH----HHHHHHHCCC--EEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccC--C
Confidence 11 1234556787 58889999888765432 33221 12346899999999998 5
Q ss_pred CC
Q psy2398 146 AR 147 (433)
Q Consensus 146 p~ 147 (433)
|+
T Consensus 387 p~ 388 (457)
T PRK11749 387 PN 388 (457)
T ss_pred CC
Confidence 55
No 334
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.65 E-value=6.4e-05 Score=75.67 Aligned_cols=41 Identities=15% Similarity=0.314 Sum_probs=37.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW 46 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~ 46 (433)
..+||+|||+|.+|+++|..+++.|.+|+|||+....||+.
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 46899999999999999999999999999999988777753
No 335
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.64 E-value=6.8e-05 Score=75.85 Aligned_cols=40 Identities=15% Similarity=0.364 Sum_probs=36.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGV 45 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~ 45 (433)
...||+|||+|.+||+||..+++.|.+|+|+||.+..||.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 3579999999999999999999999999999999887763
No 336
>KOG2311|consensus
Probab=97.64 E-value=0.00027 Score=66.44 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=31.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..+||+|||||.+|+.||.+.++.|.+.+++-.+-
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 46899999999999999999999999988887543
No 337
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.63 E-value=0.00073 Score=66.35 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=31.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.++|+|||||..|+.+|..|.+.|.+|++++++.
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 3689999999999999999999999999999864
No 338
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.63 E-value=0.00071 Score=63.95 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC-cEEEeCEEEEccCCCCCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-KKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g-~~~~~d~vIvAtG~~s~p~~ 148 (433)
...++.+.+...+++.++ .++++++|+.| +++.|.+.+.++ ..+.+|+||+|||+.+.|+.
T Consensus 84 ~A~sVv~~L~~~l~~~gV--~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGV--QFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGASWSQL 145 (376)
T ss_pred CHHHHHHHHHHHHHHCCC--EEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCcccccc
Confidence 578899999999999999 59999999999 344688887543 46899999999999765543
No 339
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.60 E-value=0.00024 Score=65.88 Aligned_cols=138 Identities=12% Similarity=0.173 Sum_probs=75.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCce----eeccc---C--CCCChhHHhHhhc---hhhcCchHHH-HHH
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYH----YYPKF---I--DGKPTPQWMLQLG---NKFSSKEETM-AYI 240 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~----~~p~~---~--~~~~~~~~~~~~p---~~~~~~~~~~-~~~ 240 (433)
..|+|||+|++|+=.|..+++.|.+|.++.+.+.. .+.-- + .-.+.+.++...| ..+.. .+. .-.
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~s--al~~ft~ 81 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKS--ALARFTP 81 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHH--HHHhCCH
Confidence 36999999999999999999999999999987642 11100 0 0011333443344 22211 000 111
Q ss_pred HHHHHHhcCCCCcCCCCCCCCCCCCCCCc------cChhhhhcccCCCeee--cCCceeeeC----CeEEecCCceeecc
Q psy2398 241 KQVFKLAGFDGVDYGLKKPDHPLDAAHPI------MNSQILYHIGHGDILP--KDDIKNLNG----NIVHFVDDTHIEVD 308 (433)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~v~~--~~~v~~~~~----~~v~~~dG~~~~~D 308 (433)
+.+..++. .+|+..-........|. +-+-+...+...+|++ +..|.++.. ..+.+.+|+++.||
T Consensus 82 ~d~i~~~e----~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d 157 (408)
T COG2081 82 EDFIDWVE----GLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCD 157 (408)
T ss_pred HHHHHHHH----hcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEcc
Confidence 11121221 22222111111111111 1133444456666665 567777753 34667888899999
Q ss_pred EEEEccCCC
Q psy2398 309 TIIYATGYN 317 (433)
Q Consensus 309 ~vi~atG~~ 317 (433)
.+|+|||=+
T Consensus 158 ~lilAtGG~ 166 (408)
T COG2081 158 SLILATGGK 166 (408)
T ss_pred EEEEecCCc
Confidence 999999944
No 340
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.60 E-value=7.6e-05 Score=73.89 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=37.5
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCccc
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN 47 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~ 47 (433)
+||+|||+||+|+.+|..|++.|++|++||++...|+.|.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~ 40 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI 40 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence 5999999999999999999999999999999999888773
No 341
>PLN02976 amine oxidase
Probab=97.58 E-value=8.6e-05 Score=79.51 Aligned_cols=44 Identities=25% Similarity=0.507 Sum_probs=40.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
..++|+|||||++|+++|..|.+.|++|+|||+++.+||.|...
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~ 735 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTD 735 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeec
Confidence 34799999999999999999999999999999999999987654
No 342
>KOG1276|consensus
Probab=97.54 E-value=0.0001 Score=68.47 Aligned_cols=42 Identities=24% Similarity=0.434 Sum_probs=36.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCC--eEEEccCCCCCCcccC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNIN--YDLYEMESDLGGVWNS 48 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~--v~v~e~~~~~Gg~~~~ 48 (433)
.++|+|+|||++||++|++|++++.+ +++||+.+.+||....
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 47999999999999999999999765 5669999999986554
No 343
>PRK12831 putative oxidoreductase; Provisional
Probab=97.54 E-value=0.0011 Score=65.28 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=31.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.++|+|||+|..|+.+|..|.+.|.+|+++.++.
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4699999999999999999999999999999764
No 344
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.54 E-value=0.00015 Score=70.85 Aligned_cols=41 Identities=17% Similarity=0.132 Sum_probs=36.1
Q ss_pred ceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCC
Q psy2398 104 HSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR 144 (433)
Q Consensus 104 ~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s 144 (433)
+|+++++|++|+.+++++.+++.++.++.||+||+|+....
T Consensus 225 ~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 265 (450)
T PF01593_consen 225 EIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSV 265 (450)
T ss_dssp GEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHH
T ss_pred eeecCCcceeccccccccccccccceEEecceeeecCchhh
Confidence 59999999999999999999999999999999999998743
No 345
>KOG2852|consensus
Probab=97.52 E-value=0.00065 Score=59.91 Aligned_cols=38 Identities=29% Similarity=0.572 Sum_probs=33.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcC------CCeEEEccCCCCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGN------INYDLYEMESDLGG 44 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g------~~v~v~e~~~~~Gg 44 (433)
.++|+|+|||+.|+++|++|.+++ +.+++||.....||
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 479999999999999999999987 79999998776554
No 346
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.47 E-value=0.0014 Score=64.81 Aligned_cols=102 Identities=19% Similarity=0.213 Sum_probs=61.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.++|+|||+|..|+.+|..+.+.|. +|++++........+. .....+.++.
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~---------------------------~~~~~~~~~~- 332 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRN---------------------------KNNPWPYWPM- 332 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccc---------------------------cccCCcccch-
Confidence 4689999999999999999998886 6887765432210000 0000111111
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEE-EE-----EccC---------cEEEeCEEEEccCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VE-----LSNG---------KKKKYDFIAVCNGA 142 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~-v~-----~~~g---------~~~~~d~vIvAtG~ 142 (433)
....+.+.+.|+ .+++++.++++..+++..+ |. ..+| .++.+|.||+|+|.
T Consensus 333 ----~~~~~~~~~~GV--~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~ 398 (471)
T PRK12810 333 ----KLEVSNAHEEGV--EREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF 398 (471)
T ss_pred ----HHHHHHHHHcCC--eEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCc
Confidence 111233455677 5888888888864333322 22 1111 46899999999997
No 347
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.45 E-value=0.00011 Score=68.08 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=29.5
Q ss_pred CcEEEECCChHHHHHHHHHHhcC-CCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGN-INYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g-~~v~v~e~~~~ 41 (433)
||++|||+|++|..+|.+|++.+ .+|+|+|+.+.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 69999999999999999999997 69999999864
No 348
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.45 E-value=0.0011 Score=59.79 Aligned_cols=37 Identities=30% Similarity=0.203 Sum_probs=32.5
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 171 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 171 ~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
+..-.|+|||+|++|+-.|..+++.+.+|.++.+.+.
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~ 59 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLS 59 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 3345799999999999999999999999999998753
No 349
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.44 E-value=0.00044 Score=67.83 Aligned_cols=91 Identities=21% Similarity=0.372 Sum_probs=61.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
.++|+|||+|.+|+-.|..|.+.+.+|+++.+..... .+. ..+.+
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~-----------~~~--------------~~~~~---------- 248 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRASESD-----------TYE--------------KLPVP---------- 248 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecccc-----------ccc--------------cCcCC----------
Confidence 4789999999999999999999999999998864220 000 00000
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYS 152 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~i~ 152 (433)
. ..+..+..|..+.. ++ .|.+.+|+.+.+|.||+|||. .+..|-++
T Consensus 249 -------------~--~~v~~~~~I~~~~~-~g--~V~f~DG~~~~~D~Ii~~TGy--~~~~pfL~ 294 (461)
T PLN02172 249 -------------Q--NNLWMHSEIDTAHE-DG--SIVFKNGKVVYADTIVHCTGY--KYHFPFLE 294 (461)
T ss_pred -------------C--CceEECCcccceec-CC--eEEECCCCCccCCEEEECCcC--CccccccC
Confidence 0 02334444544432 23 377788888999999999998 66665443
No 350
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.44 E-value=0.00096 Score=59.88 Aligned_cols=36 Identities=31% Similarity=0.294 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
..-.|+|||+|++|+=.|..+++.+.+|.++.|++.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~ 55 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA 55 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 344699999999999999999999999999999863
No 351
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.42 E-value=0.00021 Score=75.96 Aligned_cols=35 Identities=23% Similarity=0.031 Sum_probs=32.9
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.+|+|+|||+|++|+-.|..|++.|.+|+++.+.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 58999999999999999999999999999999864
No 352
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.39 E-value=0.0064 Score=58.51 Aligned_cols=42 Identities=24% Similarity=0.257 Sum_probs=35.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhc----CCCeEEEccCCCCCCcccC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEG----NINYDLYEMESDLGGVWNS 48 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~----g~~v~v~e~~~~~Gg~~~~ 48 (433)
.++.=|||+|+++|+||.+|-+. |-+|+|+|+.+..||.+.-
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg 47 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDG 47 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccC
Confidence 35788999999999999999986 5599999999988876543
No 353
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.38 E-value=0.00028 Score=74.25 Aligned_cols=37 Identities=27% Similarity=0.238 Sum_probs=33.6
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 171 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 171 ~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
..+|+|+|||+|++|+..|..|++.|.+|+++.+.+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~ 573 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREEN 573 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 3578999999999999999999999999999997753
No 354
>KOG2495|consensus
Probab=97.36 E-value=0.00045 Score=64.32 Aligned_cols=99 Identities=16% Similarity=0.291 Sum_probs=69.7
Q ss_pred CcEEEECCChHHHHHHHHHHhc--------------CCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEG--------------NINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDY 73 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~--------------g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (433)
-.++||||||.|+..|.+|+.. .++|+++|..+.+=
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL------------------------------ 268 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL------------------------------ 268 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH------------------------------
Confidence 4789999999999999999763 45899999877540
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccC--cEEEeCEEEEccCCCCCCCC
Q psy2398 74 PMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g--~~~~~d~vIvAtG~~s~p~~ 148 (433)
-+-...+.+|.++...+.++ .+..++.|..|+. ....+.+.+| +.+.|--+|-|||....|..
T Consensus 269 --------~mFdkrl~~yae~~f~~~~I--~~~~~t~Vk~V~~--~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~ 333 (491)
T KOG2495|consen 269 --------NMFDKRLVEYAENQFVRDGI--DLDTGTMVKKVTE--KTIHAKTKDGEIEEIPYGLLVWATGNGPRPVI 333 (491)
T ss_pred --------HHHHHHHHHHHHHHhhhccc--eeecccEEEeecC--cEEEEEcCCCceeeecceEEEecCCCCCchhh
Confidence 00124456666666666676 5778888888764 3334444444 35889999999998555544
No 355
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.36 E-value=0.0014 Score=66.26 Aligned_cols=95 Identities=16% Similarity=0.159 Sum_probs=63.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.+ ....
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~----------------------------------------~~~~ 182 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF----------------------------------------TCAK 182 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc----------------------------------------ccCH
Confidence 468999999999999999999999999999987532 0001
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEE---EccCcEE----EeCE----EEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVE---LSNGKKK----KYDF----IAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~---~~~g~~~----~~d~----vIvAtG~~s~p~~ 148 (433)
.+ .....++.++ .+++++.|+++..++....+. ..+|+.. .+|. |++|+|. .|+.
T Consensus 183 ~~---~~~~~~~~gV--~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~--~Pn~ 248 (555)
T TIGR03143 183 LI---AEKVKNHPKI--EVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGY--APSS 248 (555)
T ss_pred HH---HHHHHhCCCc--EEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCC--CCCh
Confidence 11 1222233466 588899999997543322222 2335433 2565 9999998 5554
No 356
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.35 E-value=0.00028 Score=70.38 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=36.4
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCC
Q psy2398 3 YKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG 43 (433)
Q Consensus 3 ~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~G 43 (433)
+...++||+|||||.+||.||..+++.|++|+|+||....+
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 34567899999999999999999999999999999977543
No 357
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.34 E-value=0.00077 Score=66.97 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..+|+|||+|.+|+++|..|+++|.+|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999753
No 358
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.34 E-value=0.00026 Score=63.51 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=31.2
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+||+|||||.+|++|+++|+++|.++.++.++.
T Consensus 3 fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 3 FDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred ccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 899999999999999999999999999998754
No 359
>KOG0405|consensus
Probab=97.33 E-value=0.00089 Score=60.62 Aligned_cols=104 Identities=12% Similarity=0.165 Sum_probs=76.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN 84 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
+.+++++|+|||+.++..|--++..|.++.+|-|.+.+ . - .|
T Consensus 187 e~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kv-------------L-----------R------------~F-- 228 (478)
T KOG0405|consen 187 EQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKV-------------L-----------R------------GF-- 228 (478)
T ss_pred hcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchh-------------h-----------c------------ch--
Confidence 45789999999999999999999999999999887643 0 0 11
Q ss_pred HHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCeEEEEEccCcEEEeCEEEEccCCCCCCCCCC
Q psy2398 85 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN 150 (433)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~p~ 150 (433)
.+.+.+.+.+..+.-++ +++-++.++++.+. ++...+.+.++....+|.|+.|+|. .|+...
T Consensus 229 D~~i~~~v~~~~~~~gi--nvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR--~Pntk~ 291 (478)
T KOG0405|consen 229 DEMISDLVTEHLEGRGI--NVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGR--KPNTKG 291 (478)
T ss_pred hHHHHHHHHHHhhhcce--eecccccceeeeecCCCceEEEEeccccccccEEEEEecC--CCCccc
Confidence 13445555555566677 58888999999887 4445666666655569999999997 555443
No 360
>PRK07236 hypothetical protein; Provisional
Probab=97.32 E-value=0.00084 Score=64.71 Aligned_cols=36 Identities=19% Similarity=0.088 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
...+|+|||||.+|+-+|..|++.|.+|+++.|++.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 356899999999999999999999999999999864
No 361
>PRK02106 choline dehydrogenase; Validated
Probab=97.31 E-value=0.00028 Score=71.37 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=33.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHh-cCCCeEEEccCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSE-GNINYDLYEMES 40 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~-~g~~v~v~e~~~ 40 (433)
...+|++|||||++|+.+|..|++ .|.+|+|+|+++
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 456899999999999999999999 799999999985
No 362
>KOG2665|consensus
Probab=97.31 E-value=0.002 Score=57.62 Aligned_cols=39 Identities=31% Similarity=0.566 Sum_probs=34.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLG 43 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~G 43 (433)
...+|++|||||+.|++.|++|.-+ +++|.|+|+...++
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 3568999999999999999999876 88999999987654
No 363
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.28 E-value=0.0077 Score=59.48 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESD 41 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~ 41 (433)
.++|+|||+|..|+.+|..+.+.|. +|+++++++.
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 3689999999999999999999996 7999998653
No 364
>KOG3855|consensus
Probab=97.26 E-value=0.0051 Score=57.26 Aligned_cols=38 Identities=29% Similarity=0.611 Sum_probs=31.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc----CCCeEEEccC--CCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG----NINYDLYEME--SDLG 43 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~----g~~v~v~e~~--~~~G 43 (433)
+.+||+|+||||.|++.|..|... ..++.++|.. +.++
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~ 78 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLG 78 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCcccc
Confidence 478999999999999999999865 4699999987 4444
No 365
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.25 E-value=0.00078 Score=64.30 Aligned_cols=128 Identities=16% Similarity=0.206 Sum_probs=67.9
Q ss_pred EEEEcCCCCHHHHHHHHhcc--CCcEEEEEecCceeecccCCCCChhHHhHhhchhhcCchHHHHHHHHHHHHhcCCCCc
Q psy2398 176 VLVVGAGNSGCDIAVDASHH--SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVD 253 (433)
Q Consensus 176 v~VvG~G~sg~d~a~~l~~~--~~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (433)
|+|||+|.+|..+|..|++. +.+|.++.+.+. +.+ ....-.|...+...... . .+. .+...-..
T Consensus 2 viIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~-~~~----~~tw~~~~~~~~~~~~~-----~-~~~---~v~~~W~~ 67 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT-IGG----NHTWSFFDSDLSDAQHA-----W-LAD---LVQTDWPG 67 (370)
T ss_pred EEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC-CCC----cccceecccccchhhhh-----h-hhh---hheEeCCC
Confidence 89999999999999999986 899999998752 111 00000000001100000 0 000 00000000
Q ss_pred CCCCCCC--CCCC-CCCCccChhhhhc----ccCCCeeecCCceeeeCCeEEecCCceeeccEEEEccCCCC
Q psy2398 254 YGLKKPD--HPLD-AAHPIMNSQILYH----IGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNR 318 (433)
Q Consensus 254 ~~~~~~~--~~~~-~~~~~~~~~~~~~----~~~~~v~~~~~v~~~~~~~v~~~dG~~~~~D~vi~atG~~~ 318 (433)
+.+..+. ..+. ........++.+. +..+ +.....|.+++.++|++.||+++.+|.||.|.|.++
T Consensus 68 ~~v~~~~~~~~l~~~Y~~I~r~~f~~~l~~~l~~~-i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 68 YEVRFPKYRRKLKTAYRSMTSTRFHEGLLQAFPEG-VILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred CEEECcchhhhcCCCceEEEHHHHHHHHHHhhccc-EEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCC
Confidence 1000010 0000 0011112333333 3343 656667888888889899999999999999999765
No 366
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.24 E-value=0.003 Score=66.25 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCC-eEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNIN-YDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~-v~v~e~~~ 40 (433)
.++|+|||||..|+.+|..+.+.|.+ |+++++++
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 36899999999999999999999997 99999764
No 367
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.22 E-value=7.3e-05 Score=64.81 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=29.1
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+|+|||+|.+|+.+|..|++.+.+|+++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 58999999999999999999999999996654
No 368
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.19 E-value=0.0036 Score=67.51 Aligned_cols=92 Identities=14% Similarity=0.181 Sum_probs=66.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
..+|+|||+|+.|+.+|..|.+.|. .|+|+|..+.+
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~------------------------------------------- 353 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV------------------------------------------- 353 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-------------------------------------------
Confidence 4689999999999999999999996 57888875422
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEc----cCcEEEeCEEEEccCCCCCCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS----NGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~----~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
...+....++.++ .++.++.|+.+..++..-.|++. ++.++.+|.|+++.|. .|+.
T Consensus 354 ---~~~l~~~L~~~GV--~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~--~Pnt 413 (985)
T TIGR01372 354 ---SPEARAEARELGI--EVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGW--TPVV 413 (985)
T ss_pred ---hHHHHHHHHHcCC--EEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCc--Cchh
Confidence 0112344566677 58889999988764332223332 3457899999999998 5554
No 369
>KOG3923|consensus
Probab=97.18 E-value=0.0016 Score=57.82 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=28.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhcC-------CCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGN-------INYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g-------~~v~v~e~~~ 40 (433)
+.+|+|||||..||++|..+++.. .+|+++..+.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 479999999999999999998853 5889987544
No 370
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.14 E-value=0.00073 Score=55.91 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=25.9
Q ss_pred EEEcCCCCHHHHHHHHhcc-----CCcEEEEEecCc
Q psy2398 177 LVVGAGNSGCDIAVDASHH-----SEKVYHSTRRGY 207 (433)
Q Consensus 177 ~VvG~G~sg~d~a~~l~~~-----~~~V~~~~r~~~ 207 (433)
+|||+|.+|+-++..|.+. ..+|+++.+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 5999999999999999987 357888887553
No 371
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.11 E-value=0.0057 Score=52.08 Aligned_cols=40 Identities=28% Similarity=0.209 Sum_probs=34.8
Q ss_pred CCCCCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 167 SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 167 ~~~~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+..++..-.|+|||+|+||.-.|+.|++.+-+|.++.|+.
T Consensus 24 ~l~~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l 63 (262)
T COG1635 24 DLLDYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL 63 (262)
T ss_pred HHHhhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence 3344556689999999999999999999999999999985
No 372
>KOG1346|consensus
Probab=97.11 E-value=0.0017 Score=60.21 Aligned_cols=101 Identities=20% Similarity=0.291 Sum_probs=70.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc----CCCeE-EEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG----NINYD-LYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYP 80 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~----g~~v~-v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (433)
++..|.|||.|+-|-..|..|.+. |.+|. ||+..... ....|
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm---------------------------------~kiLP 392 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNM---------------------------------EKILP 392 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCCh---------------------------------hhhhH
Confidence 357899999999999998888774 34433 33322111 01111
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 81 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
.-+.++-....++-|+ .++-+..|+.+....+...+.+.||.++..|.||+|+|. .|+.
T Consensus 393 -----eyls~wt~ekir~~GV--~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~--ePN~ 451 (659)
T KOG1346|consen 393 -----EYLSQWTIEKIRKGGV--DVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGE--EPNS 451 (659)
T ss_pred -----HHHHHHHHHHHHhcCc--eeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecC--CCch
Confidence 1122333344556677 588899999998887888999999999999999999998 6664
No 373
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.10 E-value=0.0021 Score=55.72 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=24.1
Q ss_pred EEEcCCCCHHHHHHHHhccCCc-EEEEEecC
Q psy2398 177 LVVGAGNSGCDIAVDASHHSEK-VYHSTRRG 206 (433)
Q Consensus 177 ~VvG~G~sg~d~a~~l~~~~~~-V~~~~r~~ 206 (433)
+|||+|++|+-+|..|.+.+.+ |+++.|++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~ 31 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERND 31 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 6999999999999999999988 99999874
No 374
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.10 E-value=0.016 Score=59.81 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=30.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
.++|+|||+|..|+.+|..+.+.|. +|+++.++.
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4789999999999999999999987 599998764
No 375
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.08 E-value=0.00024 Score=66.98 Aligned_cols=31 Identities=39% Similarity=0.668 Sum_probs=25.8
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEec
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
.|+|||||.+|+|.|..+++.|.+|.++...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~ 31 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHN 31 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeec
Confidence 4899999999999999999999999999533
No 376
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.08 E-value=0.0014 Score=68.56 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 171 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 171 ~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
..+|+|+|||+|++|+.+|..|+..|.+|+++.+.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 468999999999999999999999999999999754
No 377
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.06 E-value=0.00073 Score=66.29 Aligned_cols=36 Identities=25% Similarity=0.186 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhc--cCCcEEEEEecCc
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASH--HSEKVYHSTRRGY 207 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~--~~~~V~~~~r~~~ 207 (433)
.+++|+|||+|++|+..|..|++ .+.+|+++.+.+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~ 62 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT 62 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence 46789999999999999999986 6899999998873
No 378
>PLN02661 Putative thiazole synthesis
Probab=97.06 E-value=0.007 Score=56.35 Aligned_cols=45 Identities=22% Similarity=0.210 Sum_probs=36.2
Q ss_pred cCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhcc-CCcEEEEEecC
Q psy2398 162 SMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRG 206 (433)
Q Consensus 162 ~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~-~~~V~~~~r~~ 206 (433)
...+.+..++..-.|+|||+|.+|+=.|..|++. +.+|+++.+..
T Consensus 81 ~~~~~~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 81 RRYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred HhHhhhhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 3344444555666899999999999999999976 78999999875
No 379
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.0013 Score=59.22 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=32.2
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDL 42 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~ 42 (433)
..|-|||||.+|..||+.++++|++|.++|-++.-
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 57999999999999999999999999999987643
No 380
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.95 E-value=0.0048 Score=60.31 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=30.7
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCc-EEEEEecC
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEK-VYHSTRRG 206 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~-V~~~~r~~ 206 (433)
...|+|||+|.||+-+|..|.+.+.. +.++.++.
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~ 42 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD 42 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence 35799999999999999999999877 99999885
No 381
>KOG4254|consensus
Probab=96.89 E-value=0.00084 Score=62.92 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=37.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW 46 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~ 46 (433)
..+|++|||+|..||++|..|++.|.+|+++|++..+||.-
T Consensus 13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaa 53 (561)
T KOG4254|consen 13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAA 53 (561)
T ss_pred cccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcce
Confidence 46899999999999999999999999999999997777743
No 382
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.89 E-value=0.0011 Score=66.44 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=34.1
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
....+|++|||+|.+|..+|..|++.|.+|+++|+..
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 4467999999999999999999999999999999984
No 383
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.83 E-value=0.0021 Score=68.16 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.+++|+|||||++|+..|..|++.|.+|+++.+++
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 36799999999999999999999999999999875
No 384
>PLN02463 lycopene beta cyclase
Probab=96.78 E-value=0.0069 Score=59.14 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=30.6
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.|+|||+|++|.-+|..|++.|.+|.++.+++.
T Consensus 30 DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 30 DLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL 62 (447)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence 699999999999999999999999999998764
No 385
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.77 E-value=0.017 Score=59.68 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=30.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
.++|+|||+|..|+.+|..+.++|. +|+++.+++
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 3589999999999999999999987 699988764
No 386
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.76 E-value=0.02 Score=56.87 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=30.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESD 41 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~ 41 (433)
.++|+|||||..|+.+|..+.+.|. +|+++|..+.
T Consensus 283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 4689999999999999988888875 7999987653
No 387
>PRK06847 hypothetical protein; Provisional
Probab=96.71 E-value=0.0025 Score=61.11 Aligned_cols=35 Identities=26% Similarity=0.242 Sum_probs=32.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.++|+|||+|.+|+-+|..|++.|.+|+++.+++.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 45799999999999999999999999999998864
No 388
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.71 E-value=0.0038 Score=62.35 Aligned_cols=100 Identities=16% Similarity=0.274 Sum_probs=72.9
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHHH
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSM 87 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (433)
..-+|||+|.-|+.+|..|...|.+++|++-.+.+ .... . ...
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~l--MerQ----------------------------------L-D~~ 188 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTL--MERQ----------------------------------L-DRT 188 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeecchH--HHHh----------------------------------h-hhH
Confidence 45799999999999999999999999999865432 0000 0 022
Q ss_pred HHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCCCC
Q psy2398 88 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 88 ~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p~~ 148 (433)
-...|+...++.++ +++++...+.+...+..-.+.+.+|..+.||.||.|+|. .|+.
T Consensus 189 ag~lL~~~le~~Gi--~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GI--rPn~ 245 (793)
T COG1251 189 AGRLLRRKLEDLGI--KVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGI--RPND 245 (793)
T ss_pred HHHHHHHHHHhhcc--eeecccchhhhhcCcceeeEeecCCCcccceeEEEeccc--cccc
Confidence 24556667777787 466666666665545555678889988999999999999 6654
No 389
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.65 E-value=0.0025 Score=63.30 Aligned_cols=36 Identities=25% Similarity=0.214 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 171 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 171 ~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+.+++|+|+|+|.+|+++|..|.+.|.+|+++.+++
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 457899999999999999999999999999987654
No 390
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.65 E-value=0.0014 Score=70.30 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.+++|+|||+|++|+..|..|++.|.+|+++.+.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~ 463 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH 463 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 36899999999999999999999999999999775
No 391
>PRK06753 hypothetical protein; Provisional
Probab=96.60 E-value=0.0097 Score=57.02 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=31.3
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
+|+|||||.+|+-+|..|++.|.+|+++.|++.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 699999999999999999999999999999874
No 392
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.60 E-value=0.067 Score=50.09 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=34.0
Q ss_pred ceEeCcEEEEEEEeCCe-EEEEEcc-----CcEEEeCEEEEccCCCCCCCCCCC
Q psy2398 104 HSIFNTEVINLEQYEDI-WEVELSN-----GKKKKYDFIAVCNGAQRVARYPNY 151 (433)
Q Consensus 104 ~i~~~~~V~~v~~~~~~-~~v~~~~-----g~~~~~d~vIvAtG~~s~p~~p~i 151 (433)
++.-+++|..++.++++ +.+++.. ..++++|.||+|||- ....|.+
T Consensus 294 ~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY--~~~~P~f 345 (436)
T COG3486 294 RLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGY--RRAVPSF 345 (436)
T ss_pred eeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEeccc--ccCCchh
Confidence 35558899999987544 8887654 246889999999998 5566644
No 393
>KOG1399|consensus
Probab=96.58 E-value=0.026 Score=54.73 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=32.3
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.++|+|||+|.||.-.|..|.+.|.+++++.|++
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~ 39 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTD 39 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecC
Confidence 5789999999999999999999999999999986
No 394
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.58 E-value=0.002 Score=64.92 Aligned_cols=33 Identities=33% Similarity=0.378 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHHhcC-CCeEEEccCCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGN-INYDLYEMESD 41 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g-~~v~v~e~~~~ 41 (433)
|++|||||.+|+.+|.+|++.+ ++|+|+|+++.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 7999999999999999999998 69999999863
No 395
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.025 Score=52.15 Aligned_cols=94 Identities=18% Similarity=0.174 Sum_probs=66.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
.++|+|||+|-+.+..|..|.+.+-+|+++=|++.+ ...
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~----------------------------------------ra~- 181 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF----------------------------------------RAE- 181 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc----------------------------------------CcC-
Confidence 359999999999999999999999999999988654 111
Q ss_pred HHHHHHHHHHHHc-CCCcceEeCcEEEEEEEeC-CeEEEEEccC--cEEEeCEEEEccCCCCCCCC
Q psy2398 87 MMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYE-DIWEVELSNG--KKKKYDFIAVCNGAQRVARY 148 (433)
Q Consensus 87 ~~~~~l~~~~~~~-~~~~~i~~~~~V~~v~~~~-~~~~v~~~~g--~~~~~d~vIvAtG~~s~p~~ 148 (433)
..+.+.+.+. ++ .+++++.+.++.-++ ...++....+ ..+.+|.|+++.|. .|+.
T Consensus 182 ---~~~~~~l~~~~~i--~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~--~p~~ 240 (305)
T COG0492 182 ---EILVERLKKNVKI--EVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGH--LPNT 240 (305)
T ss_pred ---HHHHHHHHhcCCe--EEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEecCC--CCch
Confidence 2233333333 44 588899999988654 3333332212 25789999999998 5553
No 396
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.53 E-value=0.072 Score=54.91 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=30.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESD 41 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~ 41 (433)
.++|+|||+|..|+.+|..+.+.|. +|+++.+++.
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~ 486 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDE 486 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 4689999999999999999998886 7999987653
No 397
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=96.50 E-value=0.0042 Score=59.75 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=25.8
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.|+|||+|++|+=.|..+++.+.+|.++.|.+.
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~ 34 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKR 34 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcc
Confidence 489999999999999999999999999999864
No 398
>KOG2755|consensus
Probab=96.49 E-value=0.0052 Score=53.63 Aligned_cols=27 Identities=15% Similarity=0.342 Sum_probs=24.6
Q ss_pred CCeEEecCCceeeccEEEEccCCCCCC
Q psy2398 294 GNIVHFVDDTHIEVDTIIYATGYNRHF 320 (433)
Q Consensus 294 ~~~v~~~dG~~~~~D~vi~atG~~~~~ 320 (433)
++.|++.+|.++.++.+.+||||+|.+
T Consensus 80 ehci~t~~g~~~ky~kKOG~tg~kPkl 106 (334)
T KOG2755|consen 80 EHCIHTQNGEKLKYFKLCLCTGYKPKL 106 (334)
T ss_pred cceEEecCCceeeEEEEEEecCCCcce
Confidence 467899999999999999999999974
No 399
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.43 E-value=0.0098 Score=59.59 Aligned_cols=32 Identities=34% Similarity=0.563 Sum_probs=30.1
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.|+|||||.+|++.|..+++.|.+|.++.+++
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 59999999999999999999999999999874
No 400
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.35 E-value=0.0092 Score=58.04 Aligned_cols=36 Identities=22% Similarity=0.139 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCCCHHHHHHHHh-ccCCcEEEEEecCc
Q psy2398 172 RNKRVLVVGAGNSGCDIAVDAS-HHSEKVYHSTRRGY 207 (433)
Q Consensus 172 ~~~~v~VvG~G~sg~d~a~~l~-~~~~~V~~~~r~~~ 207 (433)
..++|+|||+|++|+..|..|+ +.+.+|+++.+.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~ 74 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPN 74 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 4679999999999999999876 45899999999874
No 401
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.32 E-value=0.016 Score=55.50 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=27.4
Q ss_pred CeEEEEcCCCCHHHHHHHHhcc--CC-cEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHH--SE-KVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~--~~-~V~~~~r~~ 206 (433)
++|+|||+|.||+.+|.+|++. .. .|.++.+++
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~ 37 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRP 37 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccc
Confidence 4799999999999999999986 22 388888765
No 402
>PLN02785 Protein HOTHEAD
Probab=96.29 E-value=0.0049 Score=62.36 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=31.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
..+|++|||||.+|+.+|..|.+ +.+|+|+|++..
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 35899999999999999999999 689999999863
No 403
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.27 E-value=0.046 Score=52.90 Aligned_cols=91 Identities=11% Similarity=-0.030 Sum_probs=65.6
Q ss_pred EEECCChHHHHHH-HHHH----hcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCH
Q psy2398 11 CIIGGGPLGIGLG-RELS----EGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNH 85 (433)
Q Consensus 11 ~IIGaG~~Gl~~a-~~l~----~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
+|++.|..|+..+ ..+. +.|.+|++++..+.. .+.
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pps----------------------------------------lpG 258 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPS----------------------------------------VPG 258 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCC----------------------------------------Cch
Confidence 5678888888877 4443 459999999876532 122
Q ss_pred HHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEE-EEccC--cEEEeCEEEEccCCC
Q psy2398 86 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEV-ELSNG--KKKKYDFIAVCNGAQ 143 (433)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v-~~~~g--~~~~~d~vIvAtG~~ 143 (433)
.++.+.+.+..++.++ .+..+++|++++.+++.... .+.++ ..+.+|.||+|||.+
T Consensus 259 ~rL~~aL~~~l~~~Gv--~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 259 LRLQNALRRAFERLGG--RIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHHhCCC--EEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 3577778777777787 58899999999877655443 33344 358999999999973
No 404
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.21 E-value=0.013 Score=58.41 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=29.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.++|+|||+|.+|+-.|..|.+...+|.+.-|+.
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 5799999999999999999999888999888764
No 405
>KOG0042|consensus
Probab=96.18 E-value=0.0024 Score=61.28 Aligned_cols=45 Identities=22% Similarity=0.355 Sum_probs=38.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
...+||+|||||..|..||.-.+-+|+++.++|+.+...|+-...
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkS 109 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKS 109 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccc
Confidence 345999999999999999999999999999999998766654433
No 406
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.14 E-value=0.017 Score=55.62 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=29.7
Q ss_pred EEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 176 VLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 176 v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
|+|||+|.+|.-+|..|++.|.+|.++.+++.
T Consensus 2 viIiGaG~AGl~~A~~la~~g~~v~liE~~~~ 33 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELARPGLRVQLIEPHPP 33 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 89999999999999999999999999998753
No 407
>KOG2960|consensus
Probab=96.13 E-value=0.0014 Score=55.03 Aligned_cols=42 Identities=19% Similarity=0.482 Sum_probs=34.8
Q ss_pred CcEEEECCChHHHHHHHHHHhc--CCCeEEEccCCCCC-CcccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEG--NINYDLYEMESDLG-GVWNSQ 49 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~--g~~v~v~e~~~~~G-g~~~~~ 49 (433)
.||+|+|||.+||++|+.+..+ +++|.+||..-..| |.|.-.
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGG 121 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGG 121 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccc
Confidence 5999999999999999999865 67999999876654 566544
No 408
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.11 E-value=0.019 Score=55.29 Aligned_cols=60 Identities=25% Similarity=0.299 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeEEEEEccCcEEEeCEEEEccCCCCCC
Q psy2398 84 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVA 146 (433)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~v~~~~g~~~~~d~vIvAtG~~s~p 146 (433)
....+...+.+.+.+ |+ .+++++.|+.++.+++.|.|++.+|..+.+|.||+|+|.++..
T Consensus 133 dp~~~~~~l~~~~~~-G~--~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~~ 192 (381)
T TIGR03197 133 SPPQLCRALLAHAGI-RL--TLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAGQ 192 (381)
T ss_pred ChHHHHHHHHhccCC-Cc--EEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccccc
Confidence 445666666666666 66 5888999999998878899999888778999999999997543
No 409
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.10 E-value=0.022 Score=54.89 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=31.0
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
..|+|||+|.+|+=+|..|++.|-+|+++.+.+
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~ 35 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAP 35 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCc
Confidence 469999999999999999999999999999983
No 410
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.10 E-value=0.029 Score=54.62 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=30.3
Q ss_pred eEEEEcCCCCHHHHHHHHhccC-CcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~-~~V~~~~r~~~ 207 (433)
+|+|||+|.+|+-+|..|++.| -+|+++.|++.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 6999999999999999999987 49999999864
No 411
>KOG3851|consensus
Probab=96.09 E-value=0.0058 Score=54.86 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=29.5
Q ss_pred Cceeee--CCeEEecCCceeeccEEEEccCCCCCCCCC
Q psy2398 288 DIKNLN--GNIVHFVDDTHIEVDTIIYATGYNRHFPFI 323 (433)
Q Consensus 288 ~v~~~~--~~~v~~~dG~~~~~D~vi~atG~~~~~~~l 323 (433)
.|++++ .++|.+.+|+++.+|.+|+|+|.+-++.-+
T Consensus 113 kv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~I 150 (446)
T KOG3851|consen 113 KVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKI 150 (446)
T ss_pred HHHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchh
Confidence 345553 578999999999999999999999987644
No 412
>PRK05868 hypothetical protein; Validated
Probab=96.04 E-value=0.029 Score=53.69 Aligned_cols=34 Identities=29% Similarity=0.222 Sum_probs=31.7
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
++|+|||+|.+|+-+|..|++.|.+|+++.+++.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 4799999999999999999999999999999875
No 413
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.89 E-value=0.01 Score=49.09 Aligned_cols=32 Identities=25% Similarity=0.501 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+|+|||||..|.++|..|+++|.+|+++.+..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999864
No 414
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=95.88 E-value=0.006 Score=58.42 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=28.9
Q ss_pred EEEEcCCCCHHHHHHHH--hccCCcEEEEEecCc
Q psy2398 176 VLVVGAGNSGCDIAVDA--SHHSEKVYHSTRRGY 207 (433)
Q Consensus 176 v~VvG~G~sg~d~a~~l--~~~~~~V~~~~r~~~ 207 (433)
|+|||+|++|.-+|..| ++.+.+|.++.+++.
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~ 35 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPK 35 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 89999999999999999 677999999988764
No 415
>PRK09897 hypothetical protein; Provisional
Probab=95.81 E-value=0.034 Score=55.49 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=28.4
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCC--cEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSE--KVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~--~V~~~~r~~ 206 (433)
++|+|||+|.+|+=+|..|.+.+. +|+++.++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 579999999999999999987643 799998864
No 416
>KOG2614|consensus
Probab=95.68 E-value=0.07 Score=50.07 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=31.2
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.+|+|||||.+|+-.|..|++.|-+|.+...+..
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 4799999999999999999999999999998653
No 417
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=95.66 E-value=0.074 Score=48.85 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=30.6
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.|+|||+|.+|+-+|..|++.+.+|+++.+++.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 489999999999999999999999999999864
No 418
>PRK13984 putative oxidoreductase; Provisional
Probab=95.65 E-value=0.1 Score=53.57 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=25.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC------CeEEEc
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI------NYDLYE 37 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~------~v~v~e 37 (433)
..+|+|||||..|+.+|..|.+.+. +|+++.
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 4799999999999999999998753 566654
No 419
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=95.63 E-value=0.072 Score=53.50 Aligned_cols=32 Identities=31% Similarity=0.531 Sum_probs=29.6
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.|+|||+|.+|+++|..+++.+.+|.++.+.+
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 48999999999999999999999999999864
No 420
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.63 E-value=0.012 Score=50.02 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=27.3
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
++|+|||.|..|+.+|..|++.|++|+.+|....
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4799999999999999999999999999998654
No 421
>PRK06834 hypothetical protein; Provisional
Probab=95.61 E-value=0.046 Score=54.36 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=31.6
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
..|+|||+|++|+-+|..|++.|.+|+++.|.+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4699999999999999999999999999999864
No 422
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.56 E-value=0.047 Score=45.52 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=31.4
Q ss_pred CCCCCeEEEEcCCCC-HHHHHHHHhccCCcEEEEEec
Q psy2398 170 QIRNKRVLVVGAGNS-GCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 170 ~~~~~~v~VvG~G~s-g~d~a~~l~~~~~~V~~~~r~ 205 (433)
.+.+++++|||+|.+ |.-+|..|.+.+.+|+++.|+
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 467999999999985 888999999998889988865
No 423
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.52 E-value=0.012 Score=44.73 Aligned_cols=36 Identities=31% Similarity=0.319 Sum_probs=31.1
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEec
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
+.++++|+|||+|..|..=+..|.+.+.+|+++.+.
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 356899999999999999999999999999999865
No 424
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=95.49 E-value=0.023 Score=55.50 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=30.9
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.|+|||+|++|+-+|..|++.|.+|.++.|.+.
T Consensus 7 DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~ 39 (428)
T PRK10157 7 DAIIVGAGLAGSVAALVLAREGAQVLVIERGNS 39 (428)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 699999999999999999999999999998764
No 425
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.47 E-value=0.019 Score=52.62 Aligned_cols=36 Identities=14% Similarity=0.445 Sum_probs=32.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
...+|+|||+|..|...|..|+..|++|+++|..+.
T Consensus 4 ~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 4 AIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred CccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 456899999999999999999999999999998764
No 426
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=95.45 E-value=0.013 Score=40.62 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=27.3
Q ss_pred EEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 178 VVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 178 VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
|||+|.+|+-.|..|++.+.+|+++.+++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999999864
No 427
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.42 E-value=0.035 Score=48.29 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEec
Q psy2398 171 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 171 ~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
.++++|+|||||..|..=+..|.+.+.+||++...
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 45889999999999999999999999999998743
No 428
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.32 E-value=0.023 Score=50.07 Aligned_cols=34 Identities=38% Similarity=0.609 Sum_probs=31.6
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
++++|||+|..|.+.|..|.+.|.+|+++|+.+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 4799999999999999999999999999998764
No 429
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.30 E-value=0.024 Score=48.02 Aligned_cols=32 Identities=25% Similarity=0.592 Sum_probs=28.2
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+|+|||||..|...|..++..|++|+++|..+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999865
No 430
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.26 E-value=0.03 Score=51.96 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=32.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
...+|+|||+|..|...|..++..|++|+++|..+.
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 446899999999999999999999999999998653
No 431
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=95.24 E-value=0.034 Score=53.93 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=30.0
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEec
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
..|+|||+|.+|.-+|..|++.|-+|+++.+.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 46999999999999999999999999999986
No 432
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.23 E-value=0.022 Score=53.11 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=30.8
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++|.|||.|+.||..|..|++.|++|+++|...
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 479999999999999999999999999999765
No 433
>KOG2311|consensus
Probab=95.22 E-value=0.15 Score=48.68 Aligned_cols=31 Identities=29% Similarity=0.584 Sum_probs=28.8
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEec
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
.|+|||||-.|+|.|...++.|.+.+++..+
T Consensus 30 dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 30 DVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 5999999999999999999999999888865
No 434
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.21 E-value=0.057 Score=49.15 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCC-CHHHHHHHHhccCCcEEEEEec
Q psy2398 170 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 170 ~~~~~~v~VvG~G~-sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
+++||+++|+|.|. .|.-++..|...+..|++++|+
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~ 192 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR 192 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 56799999999997 9999999999888899998874
No 435
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.17 E-value=0.024 Score=56.05 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
+|+|||+|++|+++|+.|.+.|++|+++|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 589999999999999999999999999998754
No 436
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.16 E-value=0.031 Score=54.15 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=30.0
Q ss_pred eEEEEcCCCCHHHHHHHHhccC--CcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~--~~V~~~~r~~~ 207 (433)
.|+|||+|.+|+-+|..|++.| .+|+++.+++.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 4899999999999999999985 89999999864
No 437
>KOG0399|consensus
Probab=95.16 E-value=0.033 Score=58.32 Aligned_cols=37 Identities=24% Similarity=0.305 Sum_probs=34.1
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 171 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 171 ~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
..|++|.|||+|++|.-.|..|-+.|..|++..|+..
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr 1819 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDR 1819 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCC
Confidence 4589999999999999999999999999999999863
No 438
>PLN02697 lycopene epsilon cyclase
Probab=95.15 E-value=0.031 Score=55.68 Aligned_cols=31 Identities=19% Similarity=0.316 Sum_probs=28.8
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEec
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
.|+|||+|++|+-+|..+++.|.+|.++.+.
T Consensus 110 DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 110 DLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 6999999999999999999999999999764
No 439
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.11 E-value=0.2 Score=50.89 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=29.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhcC-CCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGN-INYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g-~~v~v~e~~~ 40 (433)
..+|+|||+|..|+.++..+.+.+ .+|+++.+.+
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 468999999999999999898888 4688888764
No 440
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=95.08 E-value=0.092 Score=49.38 Aligned_cols=62 Identities=21% Similarity=0.198 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcceEeCcEEEEEEEeCCeE-EEEEccCcEEEeCEEEEccCCCCCC
Q psy2398 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVELSNGKKKKYDFIAVCNGAQRVA 146 (433)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~-~v~~~~g~~~~~d~vIvAtG~~s~p 146 (433)
......+...+.+.+.+.|+ +++.+++|+.++.+++.+ .|.+.+| ++.||.||+|+|.++..
T Consensus 133 ~v~p~~l~~~l~~~~~~~g~--~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 133 HVDPRALLKALEKALEKLGV--EIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGE 195 (337)
T ss_pred eEChHHHHHHHHHHHHHcCC--EEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhh
Confidence 34467778888888888887 588999999999876655 4666666 79999999999997543
No 441
>KOG1238|consensus
Probab=95.06 E-value=0.025 Score=56.12 Aligned_cols=37 Identities=32% Similarity=0.434 Sum_probs=33.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhc-CCCeEEEccCCCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEG-NINYDLYEMESDL 42 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~-g~~v~v~e~~~~~ 42 (433)
..||.+|||||.+|+..|..|.+. .++|.++|++...
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 468999999999999999999997 5799999998764
No 442
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.05 E-value=0.03 Score=54.08 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=35.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
..+||+|+|.|..-.-.|..|++.|.+|+.+|+++.-||.|..-
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl 46 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASL 46 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcc
Confidence 67999999999999999999999999999999999999988754
No 443
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=94.97 E-value=0.086 Score=51.32 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=29.2
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.|+|||||-.|+|.|...++.|.++.++.-..
T Consensus 6 DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 6 DVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred ceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 69999999999999999999999998888663
No 444
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.95 E-value=0.046 Score=47.31 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=31.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..++|+|||||..|..-+..|.+.|.+|+|+++..
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 34689999999999999999999999999999753
No 445
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.92 E-value=0.043 Score=51.16 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=31.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..++|+|||+|..|...|..|++.|.+|+++.+..
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 44689999999999999999999999999999854
No 446
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.82 E-value=0.027 Score=42.84 Aligned_cols=34 Identities=26% Similarity=0.459 Sum_probs=31.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEME 39 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~ 39 (433)
+..+|+|||+|..|..-+..|.+.|.+|+|+.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4579999999999999999999999999999986
No 447
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=94.80 E-value=0.037 Score=53.52 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=32.8
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCceeec
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYP 211 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~~~p 211 (433)
.|+|||+|++|.-+|..|++.|.+|.++.+.+..-.|
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k 41 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAK 41 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCC
Confidence 6999999999999999999999999999998754333
No 448
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.80 E-value=0.038 Score=51.38 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=31.4
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
++|.|||+|..|.+.|..|+++|++|+++|+.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 4799999999999999999999999999998753
No 449
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.64 E-value=0.05 Score=45.54 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=29.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.+.+|+|+|+|.+|..|+..|...|.+++++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 35799999999999999999999999999999754
No 450
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.63 E-value=0.13 Score=46.72 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=33.4
Q ss_pred CCCCCeEEEEcCCC-CHHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~-sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.+.||+++|||.|. .|.-+|..|...+..|++++++.
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t 192 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS 192 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc
Confidence 57799999999988 99999999999999999998754
No 451
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=94.61 E-value=0.032 Score=53.43 Aligned_cols=35 Identities=29% Similarity=0.277 Sum_probs=32.0
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCce
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYH 208 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~~ 208 (433)
++|+|||||.+|+++|..|++.|.+|+++.+++..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 57999999999999999999999999999987643
No 452
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.59 E-value=0.051 Score=44.49 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=29.1
Q ss_pred EEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 10 LCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 10 v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
|+|+|+|..|...|..|++.|.+|+++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999999863
No 453
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.57 E-value=0.039 Score=45.53 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=31.5
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEE
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHST 203 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~ 203 (433)
+.++++|+|||||..|...+..|.+.+.+|+++.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 5679999999999999999999999999999985
No 454
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=94.57 E-value=0.057 Score=53.72 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=36.0
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
|++.....+|.|||+|..|...|..|+..|++|+++|+...
T Consensus 1 ~~~~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 1 MMALPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCccCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 55555667899999999999999999999999999998753
No 455
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.56 E-value=0.053 Score=53.40 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=32.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..++|+|||+|..|+++|..|++.|.+|+++|+..
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34789999999999999999999999999999864
No 456
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=94.55 E-value=0.051 Score=53.03 Aligned_cols=37 Identities=32% Similarity=0.348 Sum_probs=33.3
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
...+++|+|||+|+.|...|..|++.+..|+++.|.+
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~ 156 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA 156 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC
Confidence 3457899999999999999999999999999988765
No 457
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.52 E-value=0.066 Score=44.14 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=30.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEcc
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEM 38 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~ 38 (433)
...+|+|||||..|..-+..|.+.|.+|+|+++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 357899999999999999999999999999964
No 458
>PRK04148 hypothetical protein; Provisional
Probab=94.49 E-value=0.038 Score=43.77 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=30.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
..++++||.| .|...|..|++.|.+|+.+|.++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 3679999999 999899999999999999997664
No 459
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.36 E-value=0.058 Score=44.20 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=29.3
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
.+.||+++|+|=|..|--+|..|...|.+|++....|
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 4579999999999999999999999999999998776
No 460
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=94.36 E-value=0.51 Score=39.33 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=29.7
Q ss_pred eEEEEcC-CCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~-G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
+|.|||+ |..|..++.++.++|.+||.+.|++.
T Consensus 2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~ 35 (211)
T COG2910 2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNAS 35 (211)
T ss_pred eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChH
Confidence 5788885 99999999999999999999999863
No 461
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=94.25 E-value=0.045 Score=52.28 Aligned_cols=35 Identities=31% Similarity=0.463 Sum_probs=33.0
Q ss_pred CCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 173 ~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
.++++|||||.+|++.|.+|++.|-+|+++.+++.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKeps 158 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPS 158 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 57899999999999999999999999999999874
No 462
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.23 E-value=0.075 Score=48.98 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=31.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..+|+|||+|..|...|..|++.|++|+++|+..
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4689999999999999999999999999999864
No 463
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.20 E-value=0.049 Score=47.13 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEec
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
++.+++|+|||||.+|.--+..|.+.|.+|+++...
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 356899999999999999999999999999998754
No 464
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.18 E-value=0.11 Score=41.75 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=31.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCC-eEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNIN-YDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~-v~v~e~~~ 40 (433)
+..+++|||||-+|-+++.+|.+.|.+ ++++.|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 457999999999999999999999996 99999863
No 465
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.16 E-value=0.087 Score=45.51 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=31.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEME 39 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~ 39 (433)
..++|+|||||-.|...+..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4579999999999999999999999999999864
No 466
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.15 E-value=0.072 Score=49.62 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=31.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..++|.|||+|..|...|..|++.|++|+++|+..
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 45689999999999999999999999999999754
No 467
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.15 E-value=0.057 Score=43.32 Aligned_cols=34 Identities=24% Similarity=0.486 Sum_probs=30.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~ 40 (433)
..+|+|||+|..|..+|..|.+.|+ +++++|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4689999999999999999999999 799999753
No 468
>KOG4716|consensus
Probab=94.12 E-value=0.15 Score=46.53 Aligned_cols=95 Identities=15% Similarity=0.103 Sum_probs=66.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCCCCCCccccceEeecCCCcccCCCCCCCCCCCCCCCHH
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHS 86 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (433)
+-+-+|||||+.+|.||-.|.-.|++|+|.=|+--+- +| .+
T Consensus 198 PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~Lr-------------------------------------GF--Dq 238 (503)
T KOG4716|consen 198 PGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLR-------------------------------------GF--DQ 238 (503)
T ss_pred CCceEEEccceeeeehhhhHhhcCCCcEEEEEEeecc-------------------------------------cc--cH
Confidence 4578999999999999999999999999988753220 11 25
Q ss_pred HHHHHHHHHHHHcCCCcceEeCcEEEEEEEe-CCeEEEEEcc-----CcEEEeCEEEEccCC
Q psy2398 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSN-----GKKKKYDFIAVCNGA 142 (433)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~v~~~~-----g~~~~~d~vIvAtG~ 142 (433)
++.+.+....+..|+. +.-.+..+.|+.. ++...|...+ +....||.|+.|.|.
T Consensus 239 dmae~v~~~m~~~Gik--f~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR 298 (503)
T KOG4716|consen 239 DMAELVAEHMEERGIK--FLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGR 298 (503)
T ss_pred HHHHHHHHHHHHhCCc--eeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhcc
Confidence 6777777777777873 4445455666654 4555554332 224679999999997
No 469
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=94.08 E-value=0.047 Score=52.62 Aligned_cols=33 Identities=24% Similarity=0.243 Sum_probs=30.8
Q ss_pred eEEEEcCCCCHHHHHHHHhccCCcEEEEEecCc
Q psy2398 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207 (433)
Q Consensus 175 ~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~~ 207 (433)
+|+|||||.+|+++|..|++.|.+|+++.+++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 699999999999999999999999999998764
No 470
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.02 E-value=0.057 Score=46.64 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEec
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
++.+++|+|||+|..|.-.+..|.+.+.+|+++.+.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 457899999999999999999999999999998753
No 471
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.97 E-value=0.15 Score=50.33 Aligned_cols=36 Identities=36% Similarity=0.475 Sum_probs=32.7
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 171 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 171 ~~~~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+++|+++|+|+|.+|+.+|..|++.|.+|+++.+..
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 468999999999999999999999999999988754
No 472
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.94 E-value=0.077 Score=48.77 Aligned_cols=33 Identities=15% Similarity=0.378 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.+|+|||+|..|.+.|..|++.|.+|+++|+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 589999999999999999999999999999764
No 473
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.91 E-value=0.076 Score=48.84 Aligned_cols=34 Identities=21% Similarity=0.489 Sum_probs=31.2
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
.+|+|||+|..|...|..|++.|++|+++|+.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 4799999999999999999999999999998653
No 474
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.87 E-value=0.072 Score=51.66 Aligned_cols=34 Identities=12% Similarity=0.200 Sum_probs=31.7
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
++|+|||.|..|+..|..|++.|++|+++|+.+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 6899999999999999999999999999998654
No 475
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.84 E-value=0.086 Score=48.34 Aligned_cols=34 Identities=18% Similarity=0.418 Sum_probs=31.2
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
.+|+|||+|..|...|..|++.|++|+++|..+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 5799999999999999999999999999997653
No 476
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.77 E-value=0.1 Score=49.05 Aligned_cols=35 Identities=14% Similarity=0.395 Sum_probs=32.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
.+++|.|||+|.-|...|..|.+.|++|+++++..
T Consensus 3 ~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 3 HGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 45689999999999999999999999999999864
No 477
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=93.71 E-value=0.11 Score=48.06 Aligned_cols=35 Identities=17% Similarity=0.409 Sum_probs=32.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
...+|.|||+|..|...|..|+..|++|+++|+..
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 34679999999999999999999999999999865
No 478
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.68 E-value=0.1 Score=48.38 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++|+|||+|..|...|..|.+.|.+|+++.+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 479999999999999999999999999999863
No 479
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.60 E-value=0.1 Score=49.70 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=31.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
...+|+|||+|..|+.++..|...|.+|+++|++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 34679999999999999999999999999999864
No 480
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.56 E-value=0.094 Score=48.33 Aligned_cols=34 Identities=12% Similarity=0.435 Sum_probs=31.4
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
.+|+|||+|..|...|..|+..|++|+++|+.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5799999999999999999999999999998653
No 481
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=93.42 E-value=0.15 Score=47.44 Aligned_cols=37 Identities=19% Similarity=0.431 Sum_probs=32.5
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCC--CeEEEccCC
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNI--NYDLYEMES 40 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~--~v~v~e~~~ 40 (433)
+....+|+|||+|..|.++|..|...++ ++.++|...
T Consensus 3 ~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 3 KKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4556799999999999999999999888 799999754
No 482
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.38 E-value=0.12 Score=43.10 Aligned_cols=34 Identities=24% Similarity=0.508 Sum_probs=29.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
|++|.+||-|..|...|..|.+.|++|.++|+.+
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 4689999999999999999999999999999864
No 483
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.36 E-value=0.11 Score=41.68 Aligned_cols=37 Identities=30% Similarity=0.462 Sum_probs=32.7
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhccCCc-EEEEEecC
Q psy2398 170 QIRNKRVLVVGAGNSGCDIAVDASHHSEK-VYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~sg~d~a~~l~~~~~~-V~~~~r~~ 206 (433)
.+++++++|+|+|.+|--++..|...|.+ |+++.|+.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 56799999999999999999999998754 99998864
No 484
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.36 E-value=0.11 Score=48.24 Aligned_cols=32 Identities=25% Similarity=0.463 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
+|+|||+|..|...|..|.+.|.+|+++++..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 69999999999999999999999999999853
No 485
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=93.33 E-value=0.16 Score=47.39 Aligned_cols=40 Identities=23% Similarity=0.383 Sum_probs=33.5
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHhcCC-CeEEEccCCC
Q psy2398 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEMESD 41 (433)
Q Consensus 1 M~~~~~~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~~~ 41 (433)
|+| -+..+|+|||||..|.++|..++..|+ +++++|..+.
T Consensus 1 ~~~-~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 1 MTM-IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCC-CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 554 234799999999999999999999896 8999998654
No 486
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.33 E-value=0.11 Score=48.12 Aligned_cols=30 Identities=20% Similarity=0.451 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHhcCCCeEEEcc
Q psy2398 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEM 38 (433)
Q Consensus 9 ~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~ 38 (433)
+|+|||+|..|...|..|.+.|.+|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 699999999999999999999999999998
No 487
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.31 E-value=0.1 Score=51.51 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=32.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 6 ~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
...+|+|||+|+.|+.++..++..|.+|+++|.++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35789999999999999999999999999999865
No 488
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.22 E-value=0.13 Score=48.68 Aligned_cols=32 Identities=25% Similarity=0.601 Sum_probs=30.2
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEME 39 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~ 39 (433)
++|+|||+|..|...|..|++.|++|+++++.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 47999999999999999999999999999975
No 489
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.02 E-value=0.16 Score=43.75 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=30.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCC-CeEEEccC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNI-NYDLYEME 39 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~-~v~v~e~~ 39 (433)
..+|+|||+|--|..+|..|++.|+ +++++|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4789999999999999999999999 69999975
No 490
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=92.98 E-value=0.11 Score=41.59 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=27.8
Q ss_pred EEEECCChHHHHHHHHHHhcCCCeEEEccCCC
Q psy2398 10 LCIIGGGPLGIGLGRELSEGNINYDLYEMESD 41 (433)
Q Consensus 10 v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~ 41 (433)
++|+|||+.+.+.+.-+...|++|+++|.+++
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998754
No 491
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=92.85 E-value=0.51 Score=37.95 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=30.4
Q ss_pred CCCCCeEEEEcCCCC-HHHHHHHHhccCCcEEEEEecC
Q psy2398 170 QIRNKRVLVVGAGNS-GCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 170 ~~~~~~v~VvG~G~s-g~d~a~~l~~~~~~V~~~~r~~ 206 (433)
+++||+++|+|.+.+ |.-++..|.+.+..|++++++.
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t 62 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT 62 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC
Confidence 678999999997654 8888888888899999887543
No 492
>KOG4405|consensus
Probab=92.82 E-value=0.14 Score=47.93 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=41.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccCCCCCCcccCC
Q psy2398 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQ 49 (433)
Q Consensus 5 ~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~~~Gg~~~~~ 49 (433)
+..+||+|||-|..=-..|.++.+.|.+|.=+|++...||.|...
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSf 50 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASF 50 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccce
Confidence 356899999999999999999999999999999999999999875
No 493
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=92.77 E-value=0.16 Score=47.66 Aligned_cols=33 Identities=21% Similarity=0.503 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
++|.|||+|..|...|..|++.|.+|+++++.+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 479999999999999999999999999999864
No 494
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.69 E-value=0.15 Score=48.94 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhcCCCeEEEccCC
Q psy2398 7 NIKLCIIGGGPLGIGLGRELSEGNINYDLYEMES 40 (433)
Q Consensus 7 ~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~~ 40 (433)
..+|+|+|+|+.|+.+|..++..|.+|+++|..+
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 4689999999999999999999999999999764
No 495
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.67 E-value=0.43 Score=43.21 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=32.1
Q ss_pred CCCCCeEEEEcCC-CCHHHHHHHHhccCCcEEEEEec
Q psy2398 170 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 170 ~~~~~~v~VvG~G-~sg~d~a~~l~~~~~~V~~~~r~ 205 (433)
++.||+|+|||.| ..|.-+|..|...+..|++++..
T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~ 190 (285)
T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL 190 (285)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC
Confidence 6779999999999 88999999999999999988643
No 496
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.63 E-value=0.17 Score=49.77 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=30.5
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHhcCCCeEEEccC
Q psy2398 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEME 39 (433)
Q Consensus 4 ~~~~~~v~IIGaG~~Gl~~a~~l~~~g~~v~v~e~~ 39 (433)
....++|+|+|.|-+|.++|+.|.+ |.+|++.|..
T Consensus 3 ~~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 3 SHTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 3445789999999999999999995 9999999954
No 497
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=92.62 E-value=0.12 Score=50.30 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhccCCcEEEEEecC
Q psy2398 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206 (433)
Q Consensus 174 ~~v~VvG~G~sg~d~a~~l~~~~~~V~~~~r~~ 206 (433)
++|+|||+|.+|+-+|..|++.|.+|+++.|+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 379999999999999999999999999999875
No 498
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=92.59 E-value=0.16 Score=49.27 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=38.1
Q ss_pred ceeccCCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhcc-C-CcEEEEEecC
Q psy2398 158 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH-S-EKVYHSTRRG 206 (433)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~v~VvG~G~sg~d~a~~l~~~-~-~~V~~~~r~~ 206 (433)
....+..++.....+.-.|+|||+|.+|+-+|.+|++. + ++|+++.|+.
T Consensus 15 ~~~~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 15 HRGWKPAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred CCCCCcccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 34445556666544456799999999999999999985 7 5899999864
No 499
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=92.58 E-value=0.15 Score=50.14 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=30.0
Q ss_pred CcEEEECCChHHHHHHHHHHhcC--CCeEEEccCCC
Q psy2398 8 IKLCIIGGGPLGIGLGRELSEGN--INYDLYEMESD 41 (433)
Q Consensus 8 ~~v~IIGaG~~Gl~~a~~l~~~g--~~v~v~e~~~~ 41 (433)
++|+|||+|..|+.+|..|++.| ++|+.+|....
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 57999999999999999999984 78999997653
No 500
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.55 E-value=0.38 Score=43.61 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCCC-HHHHHHHHhccCCcEEEEEec
Q psy2398 170 QIRNKRVLVVGAGNS-GCDIAVDASHHSEKVYHSTRR 205 (433)
Q Consensus 170 ~~~~~~v~VvG~G~s-g~d~a~~l~~~~~~V~~~~r~ 205 (433)
++.||+++|||.|.+ |.-+|..|...+..|++++++
T Consensus 155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~ 191 (285)
T PRK14189 155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK 191 (285)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC
Confidence 567999999999988 999999999999999987754
Done!