RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2398
(433 letters)
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 282 bits (723), Expect = 2e-92
Identities = 75/379 (19%), Positives = 135/379 (35%), Gaps = 39/379 (10%)
Query: 11 CIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQV 70
+IGGG G+ G L ++Y + + E+ GG W + SLHL SP + +
Sbjct: 7 VVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQ------HAWHSLHLFSPAGWSSI 60
Query: 71 PDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKK 130
P +PMP + YP + +L YL Y +K+ + V + + + V +G++
Sbjct: 61 PGWPMPASQGPYPARAEVLAYLAQYEQKYALPVL--RPIRVQRVSHFGERLRVVARDGRQ 118
Query: 131 KKYDFIAVCNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDI 188
+ G A P Y G F+G LHS Y +P RV ++G GNSG I
Sbjct: 119 WLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQI 178
Query: 189 AVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAG 248
+ S +E + + DG+ + +
Sbjct: 179 LAEVSTVAETTWITQHEPAFLADDV-DGRVLFERATER---------------------- 215
Query: 249 FDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVD 308
+ G + P +M +L G + + + + D T D
Sbjct: 216 WKAQQEGREPDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERAFD 275
Query: 309 TIIYATGYNRHFPFIDKEKLEWKLG-IPDLFIHIAPRNLDNIFFFGFVN----AAAGLGD 363
+I+ TG+ + L G + + + +++ G+ + A+A L
Sbjct: 276 AVIWCTGFRPALSHLKGLDLVTPQGQVEVDGSGLRALAVPSVWLLGYGDWNGMASATLI- 334
Query: 364 GLRLQGQFIRSYIQAFIRK 382
G+ + + A+
Sbjct: 335 GVTRYAREAVRQVTAYCAD 353
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 180 bits (459), Expect = 2e-52
Identities = 61/389 (15%), Positives = 114/389 (29%), Gaps = 101/389 (25%)
Query: 9 KLCIIGGGPLGIGLGRELSEGNINYD--LYEMESDLGGVWN------------------- 47
K+ IIG GP G+ + L L+E GGVWN
Sbjct: 8 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILT 67
Query: 48 ---------SQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKK 98
+Y L +P D +P+ + +Y R YA+
Sbjct: 68 TEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQP 127
Query: 99 FDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKK------YDFIAVCNGAQRVARYPNYS 152
+ T+V+++E+ + W V K +D +++CNG V PN
Sbjct: 128 LLPFIK--LATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIK 185
Query: 153 G------YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206
G G +LHS ++ P+ + VLVVG +S D+ + ++ + + G
Sbjct: 186 GLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG 245
Query: 207 YHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAA 266
+ + Q + I + + +
Sbjct: 246 GGDIQ--------NESLQQ-----------VPEITKFD----------PTTREIYLKGGK 276
Query: 267 HPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKE 326
+++Y G+ +P F ++ +
Sbjct: 277 VLSNIDRVIYCTGYLYSVP-------------FPSLAKLKSPETKLIDDGSH-------- 315
Query: 327 KLEWKLGIPDLFIHIAPRNLDNIFFFGFV 355
+ +++ HI + F G
Sbjct: 316 -------VHNVYQHIFYIPDPTLAFVGLA 337
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 161 bits (408), Expect = 8e-45
Identities = 55/236 (23%), Positives = 95/236 (40%), Gaps = 29/236 (12%)
Query: 9 KLCIIGGGPLGIGLGRELSE------GNINYDLYEMESDLGGVWN----------SQASC 52
++ I+G GP G+ R +E ++D GG WN +
Sbjct: 4 RIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVH 63
Query: 53 GRVYPSLHLISPKFNTQVPDYPMPDNY----PVYPNHSMMLDYLRSYAKKFDVYNHSIFN 108
+Y L PK + DY +++ YP ++ DY++ +K V + FN
Sbjct: 64 SSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFN 123
Query: 109 TEVINLEQYED--IWEVELSNGKKKK-----YDFIAVCNGAQRVARYPNYSGY--FSGEI 159
T V ++E ED + V + + +D++ C G P + G+ F G I
Sbjct: 124 TAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRI 183
Query: 160 LHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFID 215
LH+ D++ + ++K VL+VG+ S DI + K S R K+ +
Sbjct: 184 LHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPE 239
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 141 bits (358), Expect = 2e-38
Identities = 60/387 (15%), Positives = 110/387 (28%), Gaps = 71/387 (18%)
Query: 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYP-SLHLISP 64
++ K+ IIG G GIG+ L + I + + +G + + +P S I+P
Sbjct: 3 QHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSF-------KHWPKSTRTITP 55
Query: 65 KFNTQVP-----------DYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN 113
F + P + + +YL+ A +++ + NT V N
Sbjct: 56 SFTSNGFGMPDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYEL--NIFENTVVTN 113
Query: 114 LEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRN 173
+ + + + + D+I V G + P G +H + + D
Sbjct: 114 ISADDAYYTIATTTETYH-ADYIFVATGDYNFPKKPFKYG------IHYSEIEDFDNFNK 166
Query: 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSK 233
+ +V+G SG D A + + + T P + Q
Sbjct: 167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNV--- 223
Query: 234 EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN 293
+ G + + I + YHI
Sbjct: 224 ------------------IKQGARIEMNVHYTVKDIDFNNGQYHISFDS----------- 254
Query: 294 GNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFG 353
+ I ATG++ I ++ L H NIF G
Sbjct: 255 -------GQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIKLTTHDESTRYPNIFMIG 307
Query: 354 FV----NAAAGLGDGLRLQGQFIRSYI 376
NA R + + +
Sbjct: 308 ATVENDNAKLCYIYKFRARFAVLAHLL 334
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 104 bits (260), Expect = 2e-24
Identities = 71/406 (17%), Positives = 127/406 (31%), Gaps = 64/406 (15%)
Query: 12 IIGGGPLGIGLGRELSE-----GNINYDLYEMESDLG---GVWNSQASC--GRVYPSLHL 61
+G GP I L L E G + + + D SQ+ + + L
Sbjct: 35 GVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSL 94
Query: 62 ISPK--------FNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN 113
+P + + YP DYLR A F S + EV+
Sbjct: 95 RNPTSPYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQ--EQSRYGEEVLR 152
Query: 114 LEQYEDIWEVEL-------SNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMD 164
+E +VE ++G++ A+ R P G + H
Sbjct: 153 IEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGTPRIPQVFRALKGDGRVFHHSQ 212
Query: 165 Y------KSPDQIRNKRVLVVGAGNSGCDIAVD--ASHHSEKVYHSTRRGYHYYP----K 212
Y + + ++ ++G G S + +D S+ S + R P
Sbjct: 213 YLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRA-SALKPADDSP 271
Query: 213 FIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNS 272
F++ P++ + +S + + + + + VD L ++ + +
Sbjct: 272 FVNEVFAPKFTDLI---YSREHAERERLLREYHNTNYSVVDTDL------IERIYGVFYR 322
Query: 273 QILYHIGHGDILPKDDIKNL----NGNIVHFVD-----DTHIEVDTIIYATGYNRHFP-- 321
Q + I ++ G + D + D +I ATGY R
Sbjct: 323 QKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQLHRQ 382
Query: 322 FID--KEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGL 365
++ E L D + R I+ GF A+ GL D L
Sbjct: 383 LLEPLAEYLGDHEIGRDYRLQTDERCKVAIYAQGFSQASHGLSDTL 428
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 91.9 bits (229), Expect = 3e-20
Identities = 64/251 (25%), Positives = 86/251 (34%), Gaps = 58/251 (23%)
Query: 12 IIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW--NSQASCGRVYPSLHLISPKFNTQ 69
+IG G GI +++ + E D+GG W N YP +T+
Sbjct: 14 VIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNR-------YPGCR-----LDTE 61
Query: 70 VPDYPMPDNYPVYPNHSM---------MLDYLRSYAKKFDVYNHSIFNTEVINLEQYED- 119
Y + P ML Y+ A DV H FNT V Y +
Sbjct: 62 SYAYGYFALKGIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAAR-YVEN 120
Query: 120 --IWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY--FSGEILHS----MDYKSPDQ- 170
+WEV L N + F+ G +R P+ G F GE HS D + +
Sbjct: 121 DRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKG 180
Query: 171 --IRNKRVLVVGAGNSG----CDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWML 224
KRV V+G G +G A A +Y R TP W
Sbjct: 181 VDFTGKRVGVIGTGATGVQIIPIAAETAKE----LYVFQR--------------TPNWCT 222
Query: 225 QLGNKFSSKEE 235
LGN SKE+
Sbjct: 223 PLGNSPMSKEK 233
Score = 34.1 bits (79), Expect = 0.100
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 14/91 (15%)
Query: 300 VDDTHIEVDTIIYATGYN------RHFPFI--DKEKL--EWKLGIPDLFIHIAPRNLDNI 349
D ++D IIYATG++ D +L W G P ++ + R N
Sbjct: 373 TADAAYDLDVIIYATGFDAVTGSLDRIDIRGKDNVRLIDAWAEG-PSTYLGLQARGFPNF 431
Query: 350 FFFGFVNAAAGLGDGLRL---QGQFIRSYIQ 377
F + + + Q +++ I
Sbjct: 432 FTLVGPHNGSTFCNVGVCGGLQAEWVLRMIS 462
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 91.1 bits (227), Expect = 7e-20
Identities = 53/243 (21%), Positives = 94/243 (38%), Gaps = 48/243 (19%)
Query: 12 IIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW--NSQASCGRVYPSL------HLIS 63
++G G G+ L E + + E D+GGVW N YP
Sbjct: 21 VVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNR-------YPGARCDIESIEYC 73
Query: 64 PKFNTQVPDYPMPDNYP-VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLE--QYEDI 120
F+ + N+ Y + +L Y+ A KFD+ + F+T V + +
Sbjct: 74 YSFS---EEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNT 130
Query: 121 WEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY--FSGEILHSM--DYKSPDQIRNKRV 176
W V+ ++G + + ++ + +G V + PN+ G F+G + H+ ++ D +RV
Sbjct: 131 WTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVD-FSGQRV 189
Query: 177 LVVGAGNSG----CDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS 232
V+G G+SG IA A+ ++ R TP + + N
Sbjct: 190 GVIGTGSSGIQVSPQIAKQAAE----LFVFQR--------------TPHFAVPARNAPLD 231
Query: 233 KEE 235
E
Sbjct: 232 PEF 234
Score = 34.8 bits (81), Expect = 0.053
Identities = 16/112 (14%), Positives = 34/112 (30%), Gaps = 36/112 (32%)
Query: 300 VDDTHIEVDTIIYATGYN------RHFPFI--DKEKL--EWK------LGI-----PDLF 338
+ E+D+++ ATG++ L +W LG+ P+LF
Sbjct: 373 TSEREYELDSLVLATGFDALTGALFKIDIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLF 432
Query: 339 IHIAPRNLDNIFFFGFVNAAAGLGDGLRL---QGQFIRSYIQAFIRKSKGYL 387
P + + L + L +++ +I +
Sbjct: 433 FIAGP------------GSPSALSNMLVSIEQHVEWVTDHIAYMFKNGLTRS 472
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 90.3 bits (225), Expect = 9e-20
Identities = 53/249 (21%), Positives = 83/249 (33%), Gaps = 52/249 (20%)
Query: 12 IIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVW--NSQASCGRVYPSLHLISPKFNTQ 69
++G G G+ + +E S +GGVW N YP + +
Sbjct: 26 VVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNR-------YPGAR-----CDVE 73
Query: 70 VPDY-----PMPDNYPV----YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLE--QYE 118
DY P + Y +L YL A +FD+ F+T V + +
Sbjct: 74 SIDYSYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEG 133
Query: 119 DIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY--FSGEILHSM--DYKSPDQIRNK 174
W V G + F+ V G A P + G F+G+I+H+ + D K
Sbjct: 134 LRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVD-FTGK 192
Query: 175 RVLVVGAGNSGC----DIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF 230
RV V+G G+SG IA A ++ R + + + GN
Sbjct: 193 RVGVIGTGSSGIQSIPIIAEQAEQ----LFVFQR--------------SANYSIPAGNVP 234
Query: 231 SSKEETMAY 239
Sbjct: 235 LDDATRAEQ 243
Score = 35.6 bits (83), Expect = 0.030
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 300 VDDTHIEVDTIIYATGY 316
H ++D I+ ATG+
Sbjct: 378 TTGAHYDLDMIVLATGF 394
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 88.0 bits (219), Expect = 6e-19
Identities = 56/245 (22%), Positives = 93/245 (37%), Gaps = 52/245 (21%)
Query: 12 IIGGGPLGIGLGREL-SEGNINYDLYEMESDLGGVW--NSQASCGRVYPSL------HLI 62
+IG G GI +L E + ++ GG W N YP HL
Sbjct: 13 VIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNR-------YPGALSDTESHLY 65
Query: 63 SPKF---NTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLE--QY 117
F Q + Y +L+YL +FD+ H F TEV +
Sbjct: 66 RFSFDRDLLQESTWKT-----TYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDD 120
Query: 118 EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY--FSGEILHSMDY-KSPDQIRNK 174
E++WEV +G+ + ++ G +PN G F GE +H+ + + + +
Sbjct: 121 ENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKS-LAGR 179
Query: 175 RVLVVGAGNSG----CDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF 230
RV V+G G++G +A + H + R TPQ+ + +GN+
Sbjct: 180 RVGVIGTGSTGQQVITSLAPEVEH----LTVFVR--------------TPQYSVPVGNRP 221
Query: 231 SSKEE 235
+ E+
Sbjct: 222 VNPEQ 226
Score = 34.1 bits (79), Expect = 0.088
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 297 VHFVDDTHIEVDTIIYATGY 316
V D E+D +++ATG+
Sbjct: 363 VVTEDGVLHELDVLVFATGF 382
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 55.0 bits (133), Expect = 2e-08
Identities = 63/361 (17%), Positives = 125/361 (34%), Gaps = 90/361 (24%)
Query: 10 LCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQ 69
L IIGGGP GI + NI+ + E LGG Q +YP
Sbjct: 17 LTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGG----Q--LAALYP---------EKH 61
Query: 70 VPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-IWEVELSNG 128
+ D +P P ++ + L + A++++ N V + +D +E + G
Sbjct: 62 IYDVA---GFPEVPAIDLV-ESLWAQAERYNPDVV--LNETVTKYTKLDDGTFETRTNTG 115
Query: 129 KK--KKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDY--KSPDQIRNKRVLVVGAG 182
+ IA GA + P + +G ++ Y KS + + KRV++VG G
Sbjct: 116 NVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVY---YAVKSVEDFKGKRVVIVGGG 172
Query: 183 NSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQ 242
+S D V ++ V R ++F +T +
Sbjct: 173 DSALDWTVGLIKNAASVTLVHRG----------------------HEFQGHGKT---AHE 207
Query: 243 VFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDD 302
V + +D + +++ +L + +++ +G+
Sbjct: 208 VERARANGTIDV--------------YLETEVASIEESNGVLTRVHLRSSDGSK------ 247
Query: 303 THIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPR---NLDNIFFFGFVNAAA 359
+E D ++ G+ + + W L + + + + ++D ++ AA
Sbjct: 248 WTVEADRLLILIGFKSNLGPL----ARWDLELYENALVVDSHMKTSVDGLY-------AA 296
Query: 360 G 360
G
Sbjct: 297 G 297
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 51.0 bits (123), Expect = 3e-07
Identities = 44/204 (21%), Positives = 77/204 (37%), Gaps = 35/204 (17%)
Query: 10 LCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNTQ 69
+ I+G GP G+ G + +++ + + GG Q +YP K
Sbjct: 8 VLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGG----Q--LTALYPE------K---- 51
Query: 70 VPDYPMPDNYPVYPNHS--MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN 127
Y + +P ++ L F+ LE+ D+++V S
Sbjct: 52 -YIY----DVAGFPKVYAKDLVKGLVEQVAPFNPVYS--LGERAETLEREGDLFKVTTSQ 104
Query: 128 GKK--KKYDFIAVCNGA--QRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGN 183
G K IA GA R P + + +++ KS + + KRVL+VG G+
Sbjct: 105 GNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAV--KSKAEFQGKRVLIVGGGD 162
Query: 184 SGCDIAVDASHHSEKVY--HSTRR 205
S D A++ + ++ H RR
Sbjct: 163 SAVDWALNLLDTARRITLIH--RR 184
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 50.3 bits (121), Expect = 5e-07
Identities = 47/213 (22%), Positives = 77/213 (36%), Gaps = 35/213 (16%)
Query: 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLH 60
M+ K + IIGGGP+G+ + + E LGG Q +YP
Sbjct: 1 MREDTKVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGG----Q--LSALYP--- 51
Query: 61 LISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI 120
+ D +P ++ + L+ KFD V ++E+ D
Sbjct: 52 ------EKYIYDVA---GFPKIRAQELI-NNLKEQMAKFDQTIC--LEQAVESVEKQADG 99
Query: 121 WEVELSNGKKK--KYDFIAVCNGAQRVARYPNYSGY--FSGEILHSMDY--KSPDQIRNK 174
++N + K I NGA R + G+ LH Y + +
Sbjct: 100 VFKLVTNEETHYSKTVIITAGNGA-FKPRKLELENAEQYEGKNLH---YFVDDLQKFAGR 155
Query: 175 RVLVVGAGNSGCDIAVDASHHSEKVY--HSTRR 205
RV ++G G+S D A+ +++V H RR
Sbjct: 156 RVAILGGGDSAVDWALMLEPIAKEVSIIH--RR 186
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 50.0 bits (120), Expect = 9e-07
Identities = 50/313 (15%), Positives = 94/313 (30%), Gaps = 66/313 (21%)
Query: 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT 68
L ++G GP G+ + L++ S++GG +N
Sbjct: 375 NLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAK------------------ 416
Query: 69 QVPDYP-MPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN 127
Q+P + L Y R + V N V + +
Sbjct: 417 QIPGKEEFYE----------TLRYYRRMIEVTGVTLK--LNHTV----TADQL------- 453
Query: 128 GKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCD 187
+ +D + +G V R P G ++L +D +V ++G G G D
Sbjct: 454 ---QAFDETILASGI--VPRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFD 508
Query: 188 IAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLA 247
A+ S E + F + + Q G + +Q+ L
Sbjct: 509 TAMYLSQPGESTSQNI-------AGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQ 561
Query: 248 GFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHG-DILPKDDIKNLNGNIVHFVDDTH-- 304
KP L ++ L G ++P + ++ + +H V +
Sbjct: 562 RKAS------KPGQGLGKTTGWIHRTTLLS--RGVKMIPGVSYQKIDDDGLHVVINGETQ 613
Query: 305 -IEVDTIIYATGY 316
+ VD ++ G
Sbjct: 614 VLAVDNVVICAGQ 626
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 1e-05
Identities = 48/396 (12%), Positives = 107/396 (27%), Gaps = 107/396 (27%)
Query: 82 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYD-FIAVCN 140
Y ++ + ++ FD + +++ E+ + I + + F + +
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI--IMSKDAVSGTLRLFWTLLS 73
Query: 141 -GAQRVARY------PNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDAS 193
+ V ++ NY F + + + + P +
Sbjct: 74 KQEEMVQKFVEEVLRINYK--FLMSPIKT-EQRQPSMMT--------------------- 109
Query: 194 HHSEKVYHSTR-RGYHYYPKFIDGK-PTPQWMLQLGNKFSSKEETMAYI---------KQ 242
++Y R R Y+ F Q L+L + + K
Sbjct: 110 ----RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-LELRPAKNVLIDGVLGSGKT 164
Query: 243 VFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILY-HIGHGDILPKDDIKNLNGNIVHFVD 301
+A + Y ++ M+ +I + ++ + + P+ ++ L +++ +D
Sbjct: 165 W--VALDVCLSYKVQC----------KMDFKIFWLNLKNCNS-PETVLEMLQ-KLLYQID 210
Query: 302 DTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRN----LDNI-------- 349
H + + L N L N+
Sbjct: 211 PNWTSRSDHSSNIKLRIH---------SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 350 FFFG----FVNAAAGLGDGLRLQGQFIRSYIQAFI----RKSKGYL-KFLNAKKNDNPDL 400
F + D L S + + K L K+L+ + D P
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 401 GQDY----------FIDSHRHLWEVDFWKFIKCARM 426
I W D WK + C ++
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATW--DNWKHVNCDKL 355
Score = 35.2 bits (80), Expect = 0.048
Identities = 62/384 (16%), Positives = 109/384 (28%), Gaps = 128/384 (33%)
Query: 58 SLHLISPKFNTQVPDYP--MPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLE 115
L+ + + D P + P S++ + +R +D + H +N +
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRR--LSIIAESIRDGLATWDNWKH-------VNCD 353
Query: 116 QYEDIWEVELSNGK----KKKYDFIAVCNGAQRVARYPNYSGYFSGEIL----HSMDYKS 167
+ I E L+ + +K +D ++V +P S + +L +
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSV---------FPP-SAHIPTILLSLIWFDVIKSD 403
Query: 168 PDQIRN---KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWML 224
+ N K LV EK + +
Sbjct: 404 VMVVVNKLHKYSLV------------------EKQPKESTISIP--------------SI 431
Query: 225 QLGNKFSSKEETMAYIKQVFKLAGFDGVD-YGLKKPDHPLDAAHPIMNSQILYHIGHGDI 283
L + K E + + VD Y + K D P ++ HIGH
Sbjct: 432 YL--ELKVKLENEYALHRSI-------VDHYNIPKTFDSDDLIPPYLDQYFYSHIGH--- 479
Query: 284 LPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFP--FIDKEKLEWKLGIPDLFIHI 341
H + H E T+ F F+D LE K+ D
Sbjct: 480 --------------HLKNIEHPERMTL---------FRMVFLDFRFLEQKI-RHDSTAWN 515
Query: 342 APRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFL-----NAKKND 396
A ++ N L L+ +I + R L FL N +
Sbjct: 516 ASGSILNT-----------LQQ-LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 397 NPDLGQ--------DYFIDSHRHL 412
DL + F ++H+ +
Sbjct: 564 YTDLLRIALMAEDEAIFEEAHKQV 587
Score = 27.9 bits (61), Expect = 9.6
Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 16/129 (12%)
Query: 304 HIEVDTIIYATGYNRHFP-FID--KEKLEWKLGIPDLFIHI-APRNLDNIFFFG-FVNAA 358
H++ +T + Y F D + + K + D+ I + +D+I V+
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 359 AGLGDGLRLQGQFIRSYIQAFIRKS--KGYLKFLNAK---KNDNPDLGQDYFIDSHRHLW 413
L L + + +Q F+ + Y KFL + + P + +I+ L+
Sbjct: 65 LRLFWTLLSKQE---EMVQKFVEEVLRINY-KFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 414 EVDFWKFIK 422
D F K
Sbjct: 121 N-DNQVFAK 128
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 42.9 bits (102), Expect = 1e-04
Identities = 32/146 (21%), Positives = 52/146 (35%), Gaps = 41/146 (28%)
Query: 77 DNYPVYPNHS---MMLDYLRSYAKKFDV-YNHSIFNTEVINLEQYEDIWEVELSNGKKKK 132
+NY P + L+ + ++DV S +++I + ++E ++G K
Sbjct: 45 ENYISVPKTEGQKLAGA-LKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLK 103
Query: 133 YDFIAVCNGAQRVARYPN------YSG------------YFSGEILHSMDYKSPDQIRNK 174
I V GA+ R N Y F + K
Sbjct: 104 ARSIIVATGAK--WRNMNVPGEDQYRTKGVTYCPHCDGPLF----------------KGK 145
Query: 175 RVLVVGAGNSGCDIAVDASHHSEKVY 200
RV V+G GNSG + A+D + E V
Sbjct: 146 RVAVIGGGNSGVEAAIDLAGIVEHVT 171
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 42.3 bits (100), Expect = 3e-04
Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 39/158 (24%)
Query: 69 QVPDYPMPDNYPVYPNHS--MMLDYLRSYAKKFDV-YNHSIFNTEVINLEQYEDIWEVEL 125
QV D +NY P + L+++ +DV S ++++ + ++E
Sbjct: 248 QVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIET 307
Query: 126 SNGKKKKYDFIAVCNGAQRVARYPN------YSGY------------FSGEILHSMDYKS 167
++G K I + GA+ R N Y F
Sbjct: 308 ASGAVLKARSIIIATGAK--WRNMNVPGEDQYRTKGVTYCPHCDGPLF------------ 353
Query: 168 PDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205
+ KRV V+G GNSG + A+D + E V
Sbjct: 354 ----KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA 387
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein,
redox-active center, oxidoreductase, D oxidoreductase;
HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5
c.3.1.5 PDB: 2whd_A*
Length = 333
Score = 40.2 bits (95), Expect = 9e-04
Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 41/152 (26%)
Query: 77 DNYPVYPNHSM---MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN------ 127
+N+P +P + + D R +++F T + E + +V+ S+
Sbjct: 58 ENFPGFPEGILGVELTDKFRKQSERF--------GTTIF----TETVTKVDFSSKPFKLF 105
Query: 128 GKKKKY--DFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKS------------PDQIRN 173
K D + + GA A+ + F G + + RN
Sbjct: 106 TDSKAILADAVILAIGAV--AKRLS----FVGSGEVLGGFWNRGISACAVCDGAAPIFRN 159
Query: 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205
K + V+G G+S + A + + KVY RR
Sbjct: 160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRR 191
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A*
1f6m_A* 1tdf_A* 1tde_A*
Length = 320
Score = 39.4 bits (93), Expect = 0.002
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 61/159 (38%)
Query: 77 DNYPVYPNHSM---MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN------ 127
+N+P PN +++ + +A KF TE+I ++ I +V+L N
Sbjct: 50 ENWPGDPNDLTGPLLMERMHEHATKF--------ETEII----FDHINKVDLQNRPFRLN 97
Query: 128 GKKKKY--DFIAVCNGAQRVARY---PN---YSGY-----------FSGEILHSMDYKSP 168
G +Y D + + GA ARY P+ + G F Y
Sbjct: 98 GDNGEYTCDALIIATGAS--ARYLGLPSEEAFKGRGVSACATSDGFF---------Y--- 143
Query: 169 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVY--HSTRR 205
RN++V V+G GN+ + A+ S+ + +V+ H RR
Sbjct: 144 ---RNQKVAVIGGGNTAVEEALYLSNIASEVHLIH--RR 177
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct
structural genomics, PSI, protein structure initiative;
HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Length = 335
Score = 39.1 bits (92), Expect = 0.002
Identities = 29/158 (18%), Positives = 51/158 (32%), Gaps = 58/158 (36%)
Query: 77 DNYPVYPNHSM---MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN------ 127
+NYP + N ++D +R A +F ++ ED+ V L
Sbjct: 59 ENYPGFRNGITGPELMDEMREQALRF--------GADLR----MEDVESVSLHGPLKSVV 106
Query: 128 -GKKKKY--DFIAVCNGAQRVARY---PN---YSGY-----------FSGEILHSMDYKS 167
+ + + + GA ARY P G F +
Sbjct: 107 TADGQTHRARAVILAMGAA--ARYLQVPGEQELLGRGVSSCATCDGFF---------F-- 153
Query: 168 PDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205
R++ + V+G G+S + A + + V RR
Sbjct: 154 ----RDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRR 187
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 39.1 bits (90), Expect = 0.002
Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 1 MKYKNKNIKLCIIGGGPLGIGLGRELSE-GNINYDLYEMESDLGG 44
M + + ++ + +IG GP G+G + L++ ++ + + GG
Sbjct: 4 MTHPDISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG 48
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.004
Identities = 40/251 (15%), Positives = 70/251 (27%), Gaps = 51/251 (20%)
Query: 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKE 234
R L + G+ + V + + +++ +F P P ++ ++
Sbjct: 7 RPLTLSHGSLEHVLLVPTASF----FIASQL----QEQFNKILPEPTEGFAADDEPTTPA 58
Query: 235 ETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG 294
E + K G+ V + ++N L L +DI L
Sbjct: 59 ELVG------KFLGY--VSS--LVEPSKVGQFDQVLNL-CLTEF-ENCYLEGNDIHALAA 106
Query: 295 NIVHFVDDTHIEVDTII--YATGY---NRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNI 349
++ D T ++ +I Y T R F K LF +
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFD---------KKSNSALFRA-VGEGNAQL 156
Query: 350 F-FFGFVNAAAGLG------DGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNPDLGQ 402
FG G G + LR Q + I+ S L L D +
Sbjct: 157 VAIFG------GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 403 DYFIDSHRHLW 413
+ W
Sbjct: 211 QGL-NILE--W 218
Score = 37.7 bits (87), Expect = 0.008
Identities = 50/320 (15%), Positives = 103/320 (32%), Gaps = 98/320 (30%)
Query: 125 LSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEI--LHSMDYKSPDQIRNKRVLVVGAG 182
+ +A+ G Q N YF E+ L+ Y L+ +
Sbjct: 146 FRAVGEGNAQLVAIFGG-Q-----GNTDDYFE-ELRDLYQ-TYHV-----LVGDLIKFSA 192
Query: 183 NSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDG---KPTPQWM------------LQLG 227
+ ++ + + +EKV+ +G + ++++ P ++ +QL
Sbjct: 193 ETLSEL-IRTTLDAEKVFT---QGLNIL-EWLENPSNTPDKDYLLSIPISCPLIGVIQLA 247
Query: 228 NKFSSKEETMAYI-KQVFK-LAGFDGVDYGL---------KKPDHPLDAAHPIMNSQILY 276
+ + + + + ++ L G G GL + + + +L+
Sbjct: 248 H-YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI--TVLF 304
Query: 277 HIG--------HGDILP---KDDIKNLNGN---IVHFVDDTHIEVDTIIYATGYNRHFPF 322
IG + + P +D ++N G ++ + T +V + T N H P
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT--NSHLP- 361
Query: 323 IDKEKLEWKLGIPDLFIHIA----PRNLDNIFFF---GFVNAAAGLGDGLRLQGQFIRSY 375
+ I+ +N G + GL L L+ S
Sbjct: 362 ------------AGKQVEISLVNGAKN------LVVSGPPQSLYGLN--LTLRKAKAPSG 401
Query: 376 I-QAFI----RKSKGYLKFL 390
+ Q+ I RK K +FL
Sbjct: 402 LDQSRIPFSERKLKFSNRFL 421
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 37.3 bits (85), Expect = 0.006
Identities = 16/176 (9%), Positives = 48/176 (27%), Gaps = 23/176 (13%)
Query: 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG-----------------VWNSQAS 51
+ IIG G G+ + L+ L++ GG + ++
Sbjct: 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFTARDR 63
Query: 52 CGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDY-----LRSYAKKFDVYNHSI 106
P + P+ + + + + +
Sbjct: 64 RFATAVKQWQAQGHVAEWTPLLYNFHAGRLSPSPDEQVRWVGKPGMSAITRAMRGDMPVS 123
Query: 107 FNTEVINLEQYEDIWEVELSNGKKKK-YDFIAVCNGAQRVARYPNYSGYFSGEILH 161
F+ + + + E+ W + + G+ + + + A + + + + +
Sbjct: 124 FSCRITEVFRGEEHWNLLDAEGQNHGPFSHVIIATPAPQASTLLAAAPKLASVVAG 179
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein,
oxidoreductase, redox- active center; HET: FAD; 1.90A
{Deinococcus radiodurans}
Length = 325
Score = 37.1 bits (87), Expect = 0.007
Identities = 24/165 (14%), Positives = 49/165 (29%), Gaps = 69/165 (41%)
Query: 77 DNYPVYPNHSM---MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKY 133
+N+P +P + + A+KF +V +++ V+ Y
Sbjct: 53 ENFPGFPEPIAGMELAQRMHQQAEKF--------GAKVE----MDEVQGVQHD-ATSHPY 99
Query: 134 DFIAVCN-------------GAQRVARY---PN---YSGY------------FSGEILHS 162
F GA R P + G +
Sbjct: 100 PFTVRGYNGEYRAKAVILATGAD--PRKLGIPGEDNFWGKGVSTCATCDGFFY------- 150
Query: 163 MDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVY--HSTRR 205
+ K+V+V+G G++ + + + +++V H RR
Sbjct: 151 ---------KGKKVVVIGGGDAAVEEGMFLTKFADEVTVIH--RR 184
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP,
oxidoreductase, phosphoprotein, redox-A center; HET: FAD
CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Length = 338
Score = 37.1 bits (87), Expect = 0.008
Identities = 33/160 (20%), Positives = 57/160 (35%), Gaps = 57/160 (35%)
Query: 77 DNYPVYPNHSM---MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN------ 127
+N+P +P+ ++D +R + KF TE+I E + +V+LS+
Sbjct: 72 ENFPGFPDGLTGSELMDRMREQSTKF--------GTEII----TETVSKVDLSSKPFKLW 119
Query: 128 ----GKKKKY--DFIAVCNGAQRVARY---PN---YSGY----------FSGEILHSMDY 165
+ D I + GA A+ P Y
Sbjct: 120 TEFNEDAEPVTTDAIILATGAS--AKRMHLPGEETYWQKGISACAVCDGAV--------- 168
Query: 166 KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205
RNK + V+G G+S C+ A + + KV+ R+
Sbjct: 169 ---PIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRK 205
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+
B reduced izoalloxazine bending, oxidoreductase; HET:
FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A*
3ish_A*
Length = 311
Score = 36.3 bits (85), Expect = 0.015
Identities = 23/160 (14%), Positives = 43/160 (26%), Gaps = 62/160 (38%)
Query: 77 DNYPVYPNHSM---MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKK-- 131
+NYP + + +F + + V +
Sbjct: 47 ENYPGVKEVVSGLDFMQPWQEQCFRF--------GLKHE----MTAVQRVSKKDSHFVIL 94
Query: 132 -----KY--DFIAVCNGAQRVARY---PN---YSGY-----------FSGEILHSMDYKS 167
+ + + G + Y G F Y
Sbjct: 95 AEDGKTFEAKSVIIATGGS--PKRTGIKGESEYWGKGVSTCATCDGFF---------Y-- 141
Query: 168 PDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVY--HSTRR 205
+NK V V+G G++ + A+ ++ +KVY H RR
Sbjct: 142 ----KNKEVAVLGGGDTAVEEAIYLANICKKVYLIH--RR 175
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 36.1 bits (82), Expect = 0.018
Identities = 15/109 (13%), Positives = 32/109 (29%), Gaps = 23/109 (21%)
Query: 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWNSQASCGRVYPSLHLISPKFNT 68
++ I+G G G+ G L+ + + E ++ G GR+ +
Sbjct: 46 RILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVG--------GRIK------TFHAKK 91
Query: 69 QVPDYPMPDNYPV------YPNHSMMLDYLRSYAKKFDVYNHSIFNTEV 111
P P+ + + K + FN ++
Sbjct: 92 GEPSPFADPAQYAEAGAMRLPSFHPL---TLALIDKLGLKRRLFFNVDI 137
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 35.9 bits (83), Expect = 0.023
Identities = 32/186 (17%), Positives = 69/186 (37%), Gaps = 47/186 (25%)
Query: 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG-------------------- 43
+KN+ IIGGGP+G+ + + L + I+ +YE ++D
Sbjct: 25 SDKNV--AIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMK 82
Query: 44 --GVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPN------HSMMLDYLRSY 95
G+ + +++ K N P+N P +++L+ L
Sbjct: 83 KAGLLQTYYDLAL-PMGVNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLE-- 139
Query: 96 AKKFDVYNHSI-FNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ-RVARY----- 148
N ++ ++ +++ LE + W + N + D + + NG +V ++
Sbjct: 140 -------NDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKVRKFVTDTE 192
Query: 149 PNYSGY 154
+G
Sbjct: 193 VEETGT 198
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding,
FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 35.2 bits (82), Expect = 0.030
Identities = 30/152 (19%), Positives = 52/152 (34%), Gaps = 47/152 (30%)
Query: 77 DNYPVYPNHS---MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKY 133
D+Y M+ + +K++V + V +E D + V+ + K
Sbjct: 59 DDYLGLIEIQASDMI-KVFNKHIEKYEV---PVLLDIVEKIENRGDEFVVKTKRKGEFKA 114
Query: 134 DFIAVCNGAQRVARYPN------YSGY------------FSGEILHSMDYKSPDQIRNKR 175
D + + G + R ++G F +N+
Sbjct: 115 DSVILGIGVK--RRKLGVPGEQEFAGRGISYCSVADAPLF----------------KNRV 156
Query: 176 VLVVGAGNSGCDIAVDASHHSEKVY--HSTRR 205
V V+G G+S + A S +S KVY H RR
Sbjct: 157 VAVIGGGDSALEGAEILSSYSTKVYLIH--RR 186
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 35.2 bits (82), Expect = 0.033
Identities = 22/145 (15%), Positives = 47/145 (32%), Gaps = 44/145 (30%)
Query: 77 DNYPVYPNHS---MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKY 133
+NY + + + +A + EV ++++ + +++E ++
Sbjct: 61 ENYLGFKSIVGSELA-KLFADHAANYAK---IREGVEVRSIKKTQGGFDIETNDDTYHAK 116
Query: 134 DFIAVCNGAQRVARYPN------YSG------------YFSGEILHSMDYKSPDQIRNKR 175
I + G ++ Y G F + KR
Sbjct: 117 YVI-ITTGTT--HKHLGVKGESEYFGKGTSYCSTCDGYLF----------------KGKR 157
Query: 176 VLVVGAGNSGCDIAVDASHHSEKVY 200
V+ +G GNSG A+ S + + V
Sbjct: 158 VVTIGGGNSGAIAAISMSEYVKNVT 182
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 34.4 bits (80), Expect = 0.033
Identities = 20/137 (14%), Positives = 35/137 (25%), Gaps = 21/137 (15%)
Query: 77 DNYPVYPNHSM---MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKY 133
NYP + +L L ++A+++ + V + ++EVE G
Sbjct: 44 PNYPGLLDEPSGEELLRRLEAHARRYGA---EVRPGVVKGVRDMGGVFEVETEEGV---E 97
Query: 134 DFIAV--CNGAQRVARYPNYSGYFSGEILHSMDYKSPDQ---IRNKRVLVVGAGNSGCDI 188
+ C P+ G + Y D+ RV G
Sbjct: 98 KAERLLLCTHKD--PTLPSLLG-LTRR----GAYIDTDEGGRTSYPRVYAAGVARGKVPG 150
Query: 189 AVDASHHSEKVYHSTRR 205
S
Sbjct: 151 HAIISAGDGAYVAVHLV 167
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 35.1 bits (80), Expect = 0.039
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 2 KYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44
+ ++K I+G G G L L+ + + +GG
Sbjct: 24 QQESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGG 66
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB:
3k20_A
Length = 191
Score = 34.2 bits (78), Expect = 0.046
Identities = 9/105 (8%), Positives = 24/105 (22%), Gaps = 11/105 (10%)
Query: 87 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVA 146
+ D + + I L + +L + + ++
Sbjct: 29 QIADSISEAVTAAVSARGEALSVSTIELSELI----PDLMTAMTTRVHTTKLEEITSALS 84
Query: 147 R-------YPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNS 184
P + ++G D D + ++ S
Sbjct: 85 ASDGLVVATPVFKASYTGLFKMFFDILDTDALTGMPTIIAATAGS 129
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 34.5 bits (78), Expect = 0.066
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 4 KNKNIKLCIIGGGPLGIGLGRELSE-GNINYDLYEMESDLGG 44
+ K+ IIG GP G+G L+E G N+ LYE GG
Sbjct: 6 ELLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGG 47
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 34.5 bits (80), Expect = 0.067
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 290 KNLNGNI-VHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGI 334
N +G+ V F ++VD ++ A G R P + +L +G+
Sbjct: 263 LNTDGSKHVTFESGKTLDVDVVMMAIG--RI-PRTNDLQLG-NVGV 304
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 34.4 bits (80), Expect = 0.072
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 290 KNLNGNI-VHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGI 334
KN +G++ + D VD +I+A G R P D LE G+
Sbjct: 236 KNTDGSLTLELEDGRSETVDCLIWAIG--RE-PANDNINLE-AAGV 277
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 34.0 bits (79), Expect = 0.085
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 290 KNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGI 334
N V + I D ++ ATG R P LE + G+
Sbjct: 260 STENCYNVVLTNGQTICADRVMLATG--RV-PNTTGLGLE-RAGV 300
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 33.7 bits (78), Expect = 0.10
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 290 KNLNGNI-VHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGI 334
KN +G V F + D ++ A G R P +LE K G+
Sbjct: 259 KNADGTRHVVFESGAEADYDVVMLAIG--RV-PRSQTLQLE-KAGV 300
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 33.9 bits (77), Expect = 0.10
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44
I+G G G EL + N + E + +GG
Sbjct: 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG 38
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 33.5 bits (76), Expect = 0.11
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 6 KNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44
K+ K+ I+G G G +GR+L+E + + +GG
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG 40
>3r9u_A Thioredoxin reductase; structural genomics, center for structural
genomics of infec diseases, csgid, thioredoxin-disulfide
reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Length = 315
Score = 33.3 bits (77), Expect = 0.13
Identities = 22/161 (13%), Positives = 44/161 (27%), Gaps = 63/161 (39%)
Query: 77 DNYPVYPNHSM---MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKY 133
+NYP + +F + + ++ ++
Sbjct: 50 ENYPGVAQVMDGISFMAPWSEQCMRF--------GLKHE----MVGVEQILKNSDGSFTI 97
Query: 134 ----------DFIAVCNGAQRVARY---PN---YSGY-----------FSGEILHSMDYK 166
+ VC G+ + + G F Y
Sbjct: 98 KLEGGKTELAKAVIVCTGSA--PKKAGFKGEDEFFGKGVSTCATCDGFF---------Y- 145
Query: 167 SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVY--HSTRR 205
+NK V V+G G++ + A+ ++ K+Y H RR
Sbjct: 146 -----KNKEVAVLGGGDTALEEALYLANICSKIYLIH--RR 179
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 32.2 bits (73), Expect = 0.25
Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 6/84 (7%)
Query: 125 LSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNS 184
+ + + + A + G I+ ++ + I V V+G G
Sbjct: 113 MKKTNRTLVKLMERDDIAIYNSIPT-----AEGTIMMAIQ-HTDFTIHGANVAVLGLGRV 166
Query: 185 GCDIAVDASHHSEKVYHSTRRGYH 208
G +A + KV R
Sbjct: 167 GMSVARKFAALGAKVKVGARESDL 190
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 32.2 bits (74), Expect = 0.31
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 166 KSPDQIRNKRVLVVGAGNSG 185
K+ NK+VLV+G SG
Sbjct: 2 KTITTFENKKVLVLGLARSG 21
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD
BCN; 2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 32.1 bits (72), Expect = 0.33
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 1 MKYKNKNIKLCIIGGGPLGIGLGRELS-EGNINYDLYEMESDLGG 44
M+ L ++G G G+ + ++ + + + E +GG
Sbjct: 1 MQPMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGG 45
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase,
flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE;
1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A*
3ayl_A*
Length = 721
Score = 32.5 bits (72), Expect = 0.34
Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 20/106 (18%)
Query: 5 NKNIKLCIIGGGPLGIGLGRELSEGN--------INYDLYEMESDLGGVWNSQASCGRVY 56
N ++ I+GGG GI EL I+ +YE + D +
Sbjct: 54 AGNYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPG---IKAI 110
Query: 57 PSLHLISPKFNTQVPDYPMPDNYPVY---------PNHSMMLDYLR 93
L + + + + P + + Y
Sbjct: 111 KVRGLKAGRVSAALVHNGDPASGDTIYEVGAMRFPEIAGLTWHYAS 156
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A
{Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB:
1hrd_A 1k89_A 1aup_A 2yfh_A
Length = 449
Score = 31.8 bits (73), Expect = 0.39
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 19/84 (22%)
Query: 154 YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYH--------STRR 205
Y+ ++ + D + K V + G GN V A ++K+ S
Sbjct: 215 YYVEAVMKHEN----DTLVGKTVALAGFGN------V-AWGAAKKLAELGAKAVTLSGPD 263
Query: 206 GYHYYPKFIDGKPTPQWMLQLGNK 229
GY Y P+ I + +ML++
Sbjct: 264 GYIYDPEGITTEEKINYMLEMRAS 287
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 32.1 bits (74), Expect = 0.41
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 290 KNLNGN-IVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGI 334
+ +G + + I D ++ A G R P + LE G+
Sbjct: 239 ADADGRRVATTMKHGEIVADQVMLALG--RM-PNTNGLGLE-AAGV 280
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 31.0 bits (71), Expect = 0.62
Identities = 4/34 (11%), Positives = 10/34 (29%)
Query: 172 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205
++ V+ A A+ E + +
Sbjct: 140 DQGKIGVIAASPMAIHHALMLPDWGETTFFTNGI 173
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer,
oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces
cerevisiae} SCOP: c.2.1.11 e.37.1.1
Length = 274
Score = 30.8 bits (69), Expect = 0.67
Identities = 15/95 (15%), Positives = 37/95 (38%), Gaps = 13/95 (13%)
Query: 170 QIRNKRVLVVGAGN-----------SGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKP 218
Q+++KR+L++G G +GC + + + + + + + +
Sbjct: 10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYRED 69
Query: 219 TPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVD 253
+++ + +K E YI+ FK D +
Sbjct: 70 AKRFINPNWDP--TKNEIYEYIRSDFKDEYLDLEN 102
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 31.3 bits (70), Expect = 0.70
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 9 KLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44
++ +IG G G+ +L +N ++E E GG
Sbjct: 15 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG 50
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 30.9 bits (68), Expect = 0.75
Identities = 31/294 (10%), Positives = 82/294 (27%), Gaps = 56/294 (19%)
Query: 9 KLCIIGGGPLGIGLGRELSEGNINY---DLYEMESDLGG--------------------- 44
++ I+G G G L +++ D GG
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQY 62
Query: 45 -----VWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKF 99
+ + + + ++ + M + + + ++ Y K
Sbjct: 63 ITCTPHYAKKHQRFYDELLAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLK-- 120
Query: 100 DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEI 159
+ F V + +D WEV G +++D I + + + +
Sbjct: 121 ESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPVPEILQ-----------L 169
Query: 160 LHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPT 219
+ + R + V + + +A + + ++I P
Sbjct: 170 QGDITTLISECQRQQLEAVSYSSRYALGLFYEAGT---------KIDVPWAGQYITSNPC 220
Query: 220 PQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQ 273
+++ K + + + L V +G+ +H ++ ++ Q
Sbjct: 221 IRFVSIDNKKRNIE-----SSEIGPSLVIHTTVPFGVTYLEHSIEDVQELVFQQ 269
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 31.2 bits (70), Expect = 0.81
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 169 DQIRNKRVLVVGAGNSGCDIA 189
+ + RVLVVGAG GC++
Sbjct: 13 EAVAGGRVLVVGAGGIGCELL 33
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading
bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Length = 197
Score = 30.3 bits (68), Expect = 0.97
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 149 PNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAG 182
P Y ++G + +D + K L + G
Sbjct: 78 PIYKASYTGLLKAFLDILPQFALAGKAALPLATG 111
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 30.6 bits (70), Expect = 0.98
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 15/77 (19%)
Query: 122 EVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEI--LHSMDYKSPD--QIR----- 172
++ L++G +Y + + GA+ R + ++ L ++D + +R
Sbjct: 88 KLLLASGTAIEYGHLVLATGAR--NRMLDVPNASLPDVLYLRTLD----ESEVLRQRMPD 141
Query: 173 NKRVLVVGAGNSGCDIA 189
K V+V+GAG G + A
Sbjct: 142 KKHVVVIGAGFIGLEFA 158
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome
formation, non-canonical E1, ATP BI UBL, ATG8, ATG12,
ATG10, ATG3, UBL activation, thiolation; 1.91A
{Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Length = 340
Score = 30.4 bits (69), Expect = 1.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 169 DQIRNKRVLVVGAGNSGCDIA 189
D I+N +VL++GAG GC ++
Sbjct: 30 DIIKNTKVLLLGAGTLGCYVS 50
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 30.5 bits (69), Expect = 1.1
Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 12/81 (14%)
Query: 173 NKRVLVVGAGNSGCDIAVDASHHSEKVYHST---RRGYHYYPKFIDGKPTPQWMLQLGNK 229
+ V+++GAG G A + + T Y + P +G
Sbjct: 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQF--------VPSN-PWVGVG 54
Query: 230 FSSKEETMAYIKQVFKLAGFD 250
+ +++ I+ + G
Sbjct: 55 WKERDDIAFPIRHYVERKGIH 75
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 30.6 bits (68), Expect = 1.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44
K K+ IIG G G+ R+L ++ L E +GG
Sbjct: 104 TKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 144
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 30.5 bits (69), Expect = 1.3
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 13/80 (16%)
Query: 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHST---RRGYHYYPKFIDGKPTPQWMLQLGNKF 230
K V+V+G G G A + + + T R Y + TP +
Sbjct: 3 KHVVVIGGGVGGIATAYNLRNLMPDL-KITLISDRPYFGF--------TPAFPHLAMGWR 53
Query: 231 SSKEETMAYIKQVFKLAGFD 250
E+ + + +
Sbjct: 54 -KFEDISVPLAPLLPKFNIE 72
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 30.5 bits (69), Expect = 1.3
Identities = 9/80 (11%), Positives = 17/80 (21%), Gaps = 12/80 (15%)
Query: 174 KRVLVVGAGNSGCDIAVDASHHSEKVYHST---RRGYHYYPKFIDGKPTPQWMLQLGNKF 230
+VLV+G A + + Y+ P
Sbjct: 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYF--------RPALPHVAIGVR 53
Query: 231 SSKEETMAYIKQVFKLAGFD 250
+E + + G
Sbjct: 54 -DVDELKVDLSEALPEKGIQ 72
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 30.2 bits (68), Expect = 1.4
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 5 NKNIKLCIIGGGPLGIGLGRELSE-GNINYDLYEMESDLGG 44
+K+ ++ IIG GP G+ G L + G +Y + E +GG
Sbjct: 4 SKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGG 44
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 30.3 bits (67), Expect = 1.4
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44
K K+ IIG G G+ R+L ++ L E +GG
Sbjct: 275 TKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 315
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 30.2 bits (69), Expect = 1.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 176 VLVVGAGNSGCDIAVDAS 193
++V+G G +G IA DA+
Sbjct: 6 LIVIGGGINGAGIAADAA 23
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 30.2 bits (69), Expect = 1.4
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 290 KNLNGNIVHFVDD-THIEVDTIIYATGYNRHFPFIDKEKLEWKLGI 334
++ G + D D++I+A G R P LE GI
Sbjct: 235 RDAQGTTLVAQDGTRLEGFDSVIWAVG--RA-PNTRDLGLE-AAGI 276
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 29.8 bits (68), Expect = 1.5
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 15/77 (19%)
Query: 122 EVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEI--LHSMDYKSPD--QIRN---- 173
+ L +G D I + G++ AR G + L + D +R+
Sbjct: 89 TISLDDGTTLSADAIVIATGSR--ARTMALPGSQLPGVVTLRTYG----DVQVLRDSWTS 142
Query: 174 -KRVLVVGAGNSGCDIA 189
R+L+VG G GC++A
Sbjct: 143 ATRLLIVGGGLIGCEVA 159
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella
pertussis}
Length = 369
Score = 29.8 bits (68), Expect = 1.7
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 5 NKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG 43
+ +I +IG G +G+ + R L+ G + E +G
Sbjct: 2 STDIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIG 40
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 30.0 bits (68), Expect = 1.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 176 VLVVGAGNSGCDIAVDAS 193
+LV+G G +G IA+DA
Sbjct: 21 LLVIGGGITGAGIALDAQ 38
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B
3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Length = 434
Score = 29.9 bits (67), Expect = 1.9
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 152 SGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIA 189
SG F+ + +VLV+GAG GC++
Sbjct: 19 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELL 56
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
2rgo_A*
Length = 571
Score = 30.0 bits (68), Expect = 1.9
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 176 VLVVGAGNSGCDIAVDAS 193
+L++G G +G +AV A+
Sbjct: 35 LLIIGGGITGAGVAVQAA 52
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 29.8 bits (67), Expect = 1.9
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 10/36 (27%)
Query: 172 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207
++ +L+VGAG G A H RRGY
Sbjct: 5 KSSSLLIVGAGTWGTSTA----------LHLARRGY 30
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific
opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter
SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 29.6 bits (66), Expect = 2.0
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 171 IRNKRVLVVGAGNSGCDIAVDASHHSEKV 199
I +K V+G GN G A + + V
Sbjct: 2 IESKTYAVLGLGNGGHAFAAYLALKGQSV 30
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 29.5 bits (67), Expect = 2.0
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 15/77 (19%)
Query: 122 EVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEI--LHSMDYKSPD--QIR----- 172
V LS+G+ Y + + GA R + + L +++ D +I+
Sbjct: 91 TVALSDGRTLPYGTLVLATGAA--PRALPTLQGATMPVHTLRTLE----DARRIQAGLRP 144
Query: 173 NKRVLVVGAGNSGCDIA 189
R+L+VG G G ++A
Sbjct: 145 QSRLLIVGGGVIGLELA 161
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc
binding, metal binding protein; 3.00A {Saccharomyces
cerevisiae} PDB: 3vh2_A
Length = 598
Score = 29.8 bits (67), Expect = 2.1
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 169 DQIRNKRVLVVGAGNSGCDIA 189
D I+N +VL++GAG GC ++
Sbjct: 323 DIIKNTKVLLLGAGTLGCYVS 343
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional
protein MNMC; rossmann fold, oxidase, methyl
transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli}
PDB: 3awi_A*
Length = 676
Score = 29.9 bits (66), Expect = 2.1
Identities = 6/38 (15%), Positives = 18/38 (47%)
Query: 106 IFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ 143
+ ++ N + +D W + + ++ + + + NG Q
Sbjct: 435 YYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQ 472
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural
genomics, PSI-2, protein structu initiative; HET: MSE
GOL; 1.90A {Vibrio fischeri}
Length = 141
Score = 28.6 bits (65), Expect = 2.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 174 KRVLVVGAGNSGCDIAVDASHHSE 197
K+VL+ GAG++G +A E
Sbjct: 5 KKVLIYGAGSAGLQLANMLRQGKE 28
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 29.5 bits (67), Expect = 2.3
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 18/80 (22%)
Query: 122 EVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEI-----LHSMDYKSPD--QIRN- 173
+V LS+G+ YD + + G + R + G+ L +++ D IR
Sbjct: 92 QVILSDGRALDYDRLVLATGGR--PRPLPVASGAVGKANNFRYLRTLE----DAECIRRQ 145
Query: 174 ----KRVLVVGAGNSGCDIA 189
R++V+G G G ++A
Sbjct: 146 LIADNRLVVIGGGYIGLEVA 165
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A*
2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A*
2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 439
Score = 29.4 bits (67), Expect = 2.3
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 172 RNKRVLVVGAGNSG 185
+ K V+++G G +G
Sbjct: 4 QGKNVVIIGLGLTG 17
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB:
2ive_A*
Length = 478
Score = 29.6 bits (66), Expect = 2.4
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44
+ + + ++GGG G+ + L + L E + LGG
Sbjct: 13 RTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG 53
Score = 28.0 bits (62), Expect = 6.5
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 160 LHSMDYKSPDQIRNKRVLVVGAGNSG 185
H + + V VVG G SG
Sbjct: 3 HHHHHHHHMPRTTGMNVAVVGGGISG 28
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 29.3 bits (65), Expect = 2.7
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 4 KNKNIKLCIIGGGPLGIGLGRELSEGNINYD--LYEMESDLGG 44
+ + I+G G G+ LS + + E GG
Sbjct: 76 AHAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGG 118
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold,
ATP-binding, UBL conjugation pathway, transfer
structural genomics consortium, SGC; HET: ATP; 2.00A
{Homo sapiens} PDB: 3guc_A*
Length = 292
Score = 29.2 bits (66), Expect = 2.8
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 171 IRNKRVLVVGAGNSGC 186
IR V +VG G G
Sbjct: 34 IRTFAVAIVGVGGVGS 49
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin
biosynthesis, NAD, oxidoreducta porphyrin biosynthesis;
2.30A {Bacillus megaterium}
Length = 223
Score = 28.4 bits (64), Expect = 3.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 170 QIRNKRVLVVGAGN 183
++ + VLVVG G
Sbjct: 28 DLKGRSVLVVGGGT 41
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 29.0 bits (65), Expect = 3.4
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 26/83 (31%)
Query: 129 KKKKYD--FIAVCNGAQRVARYPNYSGYFSGE--ILHSMDY---------------KSPD 169
K++ Y FI + G + + + + S D+ SP
Sbjct: 272 KEEGYKAAFIGI--GLPE-PKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPL 328
Query: 170 QIRNKRVLVVGAGNSGCDIAVDA 192
V+V+GAG+ A D
Sbjct: 329 PSIRGAVIVLGAGD----TAFDC 347
Score = 27.9 bits (62), Expect = 8.9
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 4 KNKNIKLCIIGGGPLGIGLGRELS-EGNINYDLYEMESDLGGV 45
+ + K+ ++G GP I L+ G + ++E + +GG+
Sbjct: 184 EAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGL 226
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 28.8 bits (64), Expect = 3.8
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 2 KYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLG 43
+N + +IG GP G+ G L++ N + E ++
Sbjct: 102 APENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVR 143
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 28.9 bits (65), Expect = 3.8
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 13/78 (16%)
Query: 122 EVELSNGKKKKYDFIAVCNGAQ-RVARYPNYSGYFSGEILHSM----DYKSPDQIR---- 172
V+L++G + Y+ + G R + +G D+ +
Sbjct: 122 MVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDF---RSLEKISR 178
Query: 173 -NKRVLVVGAGNSGCDIA 189
K + ++G G G ++A
Sbjct: 179 EVKSITIIGGGFLGSELA 196
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 28.6 bits (63), Expect = 4.2
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 10/55 (18%)
Query: 1 MKYKNKNIKLCIIGGGPLGIGLGRELSEGNINYDLYEMESDLGGVWN-SQASCGR 54
MK ++ + +IG G L L + L + V++ ++ S
Sbjct: 4 MKRSIEDTPIVLIGAGNLATNLAKALYRKGF---------RIVQVYSRTEESARE 49
>1vjt_A Alpha-glucosidase; TM0752, structural genomics, JCSG, PSI, P
structure initiative, joint center for structural
genomics, hydrolase; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 483
Score = 28.7 bits (63), Expect = 4.5
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 1 MKYKNKNIKLCIIGGG 16
+ + + ++K+ IIG G
Sbjct: 6 IHHHHHHMKISIIGAG 21
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO,
variegate porphyria disease, VP
oxidoreductase-oxidoreductase inhibitor complex; HET:
ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 28.5 bits (63), Expect = 4.6
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 9 KLCIIGGGPLGIGLGRELSEGNINYD--LYEMESDLGGV 45
+ ++GGG G+ LS L E LGG
Sbjct: 4 TVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGW 42
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 28.7 bits (63), Expect = 4.8
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 176 VLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207
V+V+G G + C ++ S +KV H ++ +
Sbjct: 14 VIVLGTGITECILSGLLSVDGKKVLHIDKQDH 45
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein,
oxidoreductase, enantioselectivity, directed evolution
variant; HET: FAD; 1.85A {Aspergillus niger} PDB:
2vvl_A* 2vvl_G*
Length = 495
Score = 28.4 bits (63), Expect = 4.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 12 IIGGGPLGIGLGRELSEGNINYDLYEMESDLGG 44
+IGGG G+ R+L+ L E +GG
Sbjct: 44 VIGGGYCGLTATRDLTVAGFKTLLLEARDRIGG 76
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast;
3.10A {Plasmodium falciparum}
Length = 456
Score = 28.3 bits (64), Expect = 5.0
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 19/70 (27%)
Query: 154 YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYH--------STRR 205
YF+ +L ++ D + NK+ LV G+GN V A + EK+ S
Sbjct: 224 YFAENVLKDLN----DNLENKKCLVSGSGN------V-AQYLVEKLIEKGAIVLTMSDSN 272
Query: 206 GYHYYPKFID 215
GY P
Sbjct: 273 GYILEPNGFT 282
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 28.3 bits (62), Expect = 5.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 176 VLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 207
V+V+G G + C ++ S + +KV H R Y
Sbjct: 9 VIVLGTGLTECILSGIMSVNGKKVLHMDRNPY 40
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase,
conformationa thioester, adenylation,
transthioesterification, ATP-bindin nucleotide-binding;
2.70A {Saccharomyces cerevisiae}
Length = 1015
Score = 28.6 bits (63), Expect = 5.5
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 169 DQIRNKRVLVVGAGNSGCDIA 189
+++ VL++G G +IA
Sbjct: 23 LKMQTSNVLILGLKGLGVEIA 43
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 28.0 bits (63), Expect = 5.5
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 164 DYKSPDQIRNKRVLVVGAGNSGCDIA 189
++ + +L++G G+ G IA
Sbjct: 131 QSHPYQGLKGRTLLILGTGSIGQHIA 156
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 28.0 bits (63), Expect = 5.5
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 164 DYKSPDQIRNKRVLVVGAGNSGCDIA 189
V ++GAG G +A
Sbjct: 130 KPLPEYTREEFSVGIMGAGVLGAKVA 155
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 28.4 bits (63), Expect = 5.6
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 176 VLVVGAGNSGCDIAVDASHHSEKVYHSTR 204
+L+VG G C A +A ++K +
Sbjct: 25 LLMVGGGMGNCGAAFEAVRWADKYAPEAK 53
>2v4w_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid
biosynthesis, cholesterol biosynthesis, mitochondrion,
phosphoprotein; HET: HMG; 1.7A {Homo sapiens} PDB:
2wya_A*
Length = 460
Score = 28.3 bits (62), Expect = 5.6
Identities = 16/118 (13%), Positives = 38/118 (32%), Gaps = 5/118 (4%)
Query: 73 YPMPDNYPVYPNHSMML--DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKK 130
+ P V + + ++ D+L + + + + LE +++ + K
Sbjct: 252 FHTPFCKMVQKSLARLMFNDFLSASSDTQTSLYKGLEAFGGLKLEDTYTNKDLDKALLKA 311
Query: 131 KKYDFIA-VCNGAQRVARYPN-YSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGC 186
+ F N Y+ G + + + S ++ R+ G SG
Sbjct: 312 SQDMFDKKTKASLYLSTHNGNMYTSSLYGCLASLLSHHSAQELAGSRIGAFSYG-SGL 368
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 28.5 bits (64), Expect = 5.7
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 10/32 (31%)
Query: 175 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 206
R++++GAG G ++A RG
Sbjct: 6 RIVIIGAGIVGTNLA----------DELVTRG 27
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 28.2 bits (62), Expect = 5.8
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 164 DYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 205
Y+ N + LVVGAG G AV+ + +V +R
Sbjct: 83 VYQQGQACTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKR 124
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A
{Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Length = 198
Score = 27.6 bits (62), Expect = 6.4
Identities = 6/31 (19%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 106 IFNTEVINLEQYEDIWEVELSNGKKKKYDFI 136
+ + + +E + +E SNG ++ Y+ +
Sbjct: 18 VARSRLFTVESVD----LEFSNGVRRVYERM 44
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium
toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A*
1c0k_A*
Length = 363
Score = 28.1 bits (62), Expect = 6.8
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 174 KRVLVVGAGNSGCDIAVDASHHSEKV 199
KRV+V+G+G G A+ + V
Sbjct: 7 KRVVVLGSGVIGLSSALILARKGYSV 32
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein
structure, MCCC7, peptide antibiotics, N-P bond
formation, transferase; HET: ATP; 1.90A {Escherichia
coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Length = 353
Score = 27.7 bits (62), Expect = 7.0
Identities = 6/32 (18%), Positives = 17/32 (53%)
Query: 158 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIA 189
+ + D+++N +V+++G G G ++
Sbjct: 103 QSYGANPVLVQDKLKNAKVVILGCGGIGNHVS 134
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 27.9 bits (62), Expect = 7.1
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 158 EILHSMDYKSPDQIRNKRVLVVGAGNSG 185
E L K V++VGAG +G
Sbjct: 18 EFLEIARNGLKATSNPKHVVIVGAGMAG 45
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens}
SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A*
1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A*
2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A*
2v60_A* 2v61_A* 2vrl_A* ...
Length = 520
Score = 27.9 bits (62), Expect = 7.7
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 12 IIGGGPLGIGLGRELSEGNINYDLYEMESDLGG-VWNSQASCGRVY 56
++GGG G+ + L + +N + E +GG + + +
Sbjct: 9 VVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYV 54
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 27.8 bits (62), Expect = 7.9
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 174 KRVLVVGAGNSGCDIA 189
++V+VVG G G A
Sbjct: 3 RKVVVVGGGTGGATAA 18
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis}
SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Length = 456
Score = 27.9 bits (62), Expect = 8.5
Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 19/149 (12%)
Query: 130 KKKYDFIAVCNGAQRVARYPNYSG------YFSGEIL------HSMDYKSPDQIRNKRVL 177
++YD + GAQ R N G + + + + SPD + R +
Sbjct: 94 SERYDAVIYAVGAQS-DRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPD-LSGARAV 151
Query: 178 VVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM 237
V+G GN D+A + + T H ++ +
Sbjct: 152 VIGNGNVALDVARILLTDPDVLAR-TDIADHALESLRPRGIQEVVIV----GRRGPLQAA 206
Query: 238 AYIKQVFKLAGFDGVDYGLKKPDHPLDAA 266
++ +LA DGVD + +
Sbjct: 207 FTTLELRELADLDGVDVVIDPAELDGITD 235
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: AMP; 1.50A {Thermotoga
maritima} PDB: 3l4b_A*
Length = 155
Score = 26.8 bits (60), Expect = 8.6
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 1 MKYKNKNIKLCIIGGGPLGIGLGRELS-EGN 30
M K K+ + I G G LG + S G+
Sbjct: 13 MSKKQKSKYIVIFGCGRLGSLIANLASSSGH 43
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 27.6 bits (60), Expect = 8.7
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 174 KRVLVVGAGNSGCDIAVDASHHSEKV 199
K VL++G+G + KV
Sbjct: 4 KSVLMLGSGFVTRPTLDVLTDSGIKV 29
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 27.7 bits (62), Expect = 8.8
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 169 DQIRNKRVLVVGAGNS 184
+ R LV+G S
Sbjct: 31 SVVSQSRFLVLGGAGS 46
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 27.5 bits (62), Expect = 9.0
Identities = 2/35 (5%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 172 RNKRVLVVGAGNSGC-DIAVDASHHSEKVYHSTRR 205
+++ ++++ + + S + +T
Sbjct: 145 KDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNG 179
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2;
1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A*
2hj9_A*
Length = 342
Score = 27.5 bits (61), Expect = 9.8
Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 8/69 (11%)
Query: 307 VDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDN---IFFFGFVNAAAGLGD 363
D +I+ RH F++ + I R D + GF +A
Sbjct: 105 SDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGS--- 161
Query: 364 GLRLQGQFI 372
R
Sbjct: 162 --RELATEF 168
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein
complex, THIF, TRAN biosynthetic protein complex; 1.98A
{Escherichia coli} PDB: 1zfn_A* 1zkm_A
Length = 251
Score = 27.1 bits (61), Expect = 10.0
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 159 ILHSMDYKSPDQIRNKRVLVVGAGNSGCDIA 189
+L + ++ + +VL++G G G A
Sbjct: 14 LLDDIALDGQQKLLDSQVLIIGLGGLGTPAA 44
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.141 0.444
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,302,568
Number of extensions: 465355
Number of successful extensions: 1866
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1814
Number of HSP's successfully gapped: 153
Length of query: 433
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 337
Effective length of database: 4,021,377
Effective search space: 1355204049
Effective search space used: 1355204049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)