BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2399
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 205 bits (522), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 93/197 (47%), Positives = 130/197 (65%), Gaps = 6/197 (3%)
Query: 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI 70
++I VT ALPYANG +H+GH++E+IQAD+WVR+Q M + +V FICADDAHG I
Sbjct: 5 AKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRM-----RGHEVNFICADDAHGTPI 59
Query: 71 MIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXX 130
M+ A++ G+TP++ I +S + GF I +DN++ST S EN L + IY L
Sbjct: 60 MLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRL-KENG 118
Query: 131 XXXXXXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSIL 190
Q +DP K +FLPDR++KG CP C + DQYGD CE C + Y+PT+LI P S++
Sbjct: 119 FIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVV 178
Query: 191 SGTKPIIKSSKHFFFKL 207
SG P+++ S+HFFF L
Sbjct: 179 SGATPVMRDSEHFFFDL 195
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 205 bits (522), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 93/197 (47%), Positives = 130/197 (65%), Gaps = 6/197 (3%)
Query: 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI 70
++I VT ALPYANG +H+GH++E+IQAD+WVR+Q M + +V FICADDAHG I
Sbjct: 4 AKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRM-----RGHEVNFICADDAHGTPI 58
Query: 71 MIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXX 130
M+ A++ G+TP++ I +S + GF I +DN++ST S EN L + IY L
Sbjct: 59 MLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRL-KENG 117
Query: 131 XXXXXXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSIL 190
Q +DP K +FLPDR++KG CP C + DQYGD CE C + Y+PT+LI P S++
Sbjct: 118 FIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVV 177
Query: 191 SGTKPIIKSSKHFFFKL 207
SG P+++ S+HFFF L
Sbjct: 178 SGATPVMRDSEHFFFDL 194
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 205 bits (522), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 93/197 (47%), Positives = 130/197 (65%), Gaps = 6/197 (3%)
Query: 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI 70
++I VT ALPYANG +H+GH++E+IQAD+WVR+Q M + +V FICADDAHG I
Sbjct: 4 AKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRM-----RGHEVNFICADDAHGTPI 58
Query: 71 MIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXX 130
M+ A++ G+TP++ I +S + GF I +DN++ST S EN L + IY L
Sbjct: 59 MLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRL-KENG 117
Query: 131 XXXXXXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSIL 190
Q +DP K +FLPDR++KG CP C + DQYGD CE C + Y+PT+LI P S++
Sbjct: 118 FIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVV 177
Query: 191 SGTKPIIKSSKHFFFKL 207
SG P+++ S+HFFF L
Sbjct: 178 SGATPVMRDSEHFFFDL 194
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 93/197 (47%), Positives = 130/197 (65%), Gaps = 6/197 (3%)
Query: 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI 70
++I VT ALPYANG +H+GH++E+IQAD+WVR+Q M + +V FICADDAHG I
Sbjct: 4 AKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRM-----RGHEVNFICADDAHGTPI 58
Query: 71 MIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXX 130
M+ A++ G+TP++ I +S + GF I +DN++ST S EN L + IY L
Sbjct: 59 MLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRL-KENG 117
Query: 131 XXXXXXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSIL 190
Q +DP K +FLPDR++KG CP C + DQYGD CE C + Y+PT+LI P S++
Sbjct: 118 FIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVV 177
Query: 191 SGTKPIIKSSKHFFFKL 207
SG P+++ S+HFFF L
Sbjct: 178 SGATPVMRDSEHFFFDL 194
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 202 bits (515), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 92/197 (46%), Positives = 129/197 (65%), Gaps = 6/197 (3%)
Query: 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI 70
++I VT A PYANG +H+GH++E+IQAD+WVR+Q M + +V FICADDAHG I
Sbjct: 17 AKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRM-----RGHEVNFICADDAHGTPI 71
Query: 71 MIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXX 130
M+ A++ G+TP++ I +S + GF I +DN++ST S EN L + IY L
Sbjct: 72 MLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRL-KENG 130
Query: 131 XXXXXXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSIL 190
Q +DP K +FLPDR++KG CP C + DQYGD CE C + Y+PT+LI P S++
Sbjct: 131 FIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVV 190
Query: 191 SGTKPIIKSSKHFFFKL 207
SG P+++ S+HFFF L
Sbjct: 191 SGATPVMRDSEHFFFDL 207
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 120 bits (300), Expect = 9e-28, Method: Composition-based stats.
Identities = 74/219 (33%), Positives = 107/219 (48%), Gaps = 10/219 (4%)
Query: 13 RIFVTTALPYANGELHIGHIM-EYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
R VT+ALPYANG +H GH+ Y+ ADI+VR+ + K V FIC D HG I
Sbjct: 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRL-----KGEDVVFICGTDEHGTPIS 57
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXXX 131
A K G +P+E ++ K I FD + T+ + L Q+ + Y
Sbjct: 58 FRALKEGRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHL 117
Query: 132 XXXXXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
+ + K +FLPDR++ G CP C A+DQ GD CE C TP LINP +
Sbjct: 118 VKKVTKQAYCEHDK-MFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRCAIC 176
Query: 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEI 230
G + S H++ K+ D + L++W I + +P +
Sbjct: 177 GRPISFRDSAHYYIKMQD--FAERLKRW-IEKQPWKPNV 212
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
++TTA+ Y NG+ HIGH E I D RFQ + NG VYF+ D HG ++ +A
Sbjct: 28 YITTAIAYPNGKPHIGHAYELIATDAMARFQRL---NGMD--VYFLTGTDEHGIKMLQSA 82
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTL 125
K G+TP++ + +S ++ + D++ T + Q I+ +
Sbjct: 83 RKEGITPRDLADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAIWQAM 133
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 75/197 (38%), Gaps = 35/197 (17%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
+VTT + Y N E H+GH + AD R+ + + +F+ D HG + AA
Sbjct: 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLD-----GYRTFFLTGTDEHGETVYRAA 60
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXXXXXX 134
+ AG PK F++ +S K+ D I +D++ T + +VQ + +Y
Sbjct: 61 QAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVY-------- 112
Query: 135 XXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTK 194
E + G +C C YT +L+ + G
Sbjct: 113 ----------------------EAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRP 150
Query: 195 PIIKSSKHFFFKLSDKR 211
+ ++FF++ R
Sbjct: 151 VERRKEGNYFFRMEKYR 167
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 75/197 (38%), Gaps = 35/197 (17%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
+VTT + Y N E H+GH + AD R+ + + +F+ D HG + AA
Sbjct: 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLD-----GYRTFFLTGTDEHGETVYRAA 60
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXXXXXX 134
+ AG PK F++ +S K+ D I +D++ T + +VQ + +Y
Sbjct: 61 QAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVY-------- 112
Query: 135 XXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTK 194
E + G +C C YT +L+ + G
Sbjct: 113 ----------------------EAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRP 150
Query: 195 PIIKSSKHFFFKLSDKR 211
+ ++FF++ R
Sbjct: 151 VERRKEGNYFFRMEKYR 167
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 5/146 (3%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
+VTT + Y N E H+GH + AD R+ + + +F+ D HG + AA
Sbjct: 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLD-----GYRTFFLTGTDEHGETVYRAA 60
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXXXXXX 134
+ AG PK F++ +S K+ D I +D++ T + +VQ + +Y
Sbjct: 61 QAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYG 120
Query: 135 XXXXQFFDPIKNIFLPDRYIKGECPI 160
+ + + ++G CPI
Sbjct: 121 EYEGLYCVSCERFYTEKELVEGLCPI 146
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI 70
+++ +VTT + Y N H+GH I AD R+ + + V+F+ D HG I
Sbjct: 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRL-----RDYDVFFLTGTDEHGLKI 58
Query: 71 MIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLY 126
AE+ G++PKE ++ + KK + I++ + T ++ VQK+++ Y
Sbjct: 59 QKKAEELGISPKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFEECY 114
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 6 SEFKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDA 65
K + F TT + Y N HIGH+ + D+ R+ + K +V+ + D
Sbjct: 20 GSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRV-----KGEEVFVMTGTDE 74
Query: 66 HGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTL 125
HG + AA K G++P +F ++SS K+ + + T + + LVQ I+ L
Sbjct: 75 HGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKL 134
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
++TTA+ Y NG HIGH EYI D RF+ + V ++ D HG + A
Sbjct: 15 YITTAIAYPNGVPHIGHAYEYIATDAIARFKRLD-----GYDVRYLTGTDVHGQKMAETA 69
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIY 122
K G+ E S ++ + I FD + T ++ + + I+
Sbjct: 70 AKEGIPAAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKAIW 117
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
FVT+ + Y N HIGH+ + D+ R+ + K +V+ + D HG + AA
Sbjct: 12 FVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRV-----KGERVFALTGTDEHGQKVAEAA 66
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTL 125
++ ++P +F ++ KK + D + T + ++ +V++++ L
Sbjct: 67 KQKQVSPYDFTTAVAGEFKKXFEQMDYSIDYFIRTTNEQHKAVVKELWTKL 117
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
FVT+ + Y N HIGH+ + D+ R+ + K +V+ + D HG + AA
Sbjct: 12 FVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRV-----KGERVFALTGTDEHGQKVAEAA 66
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTL 125
++ ++P +F ++ KK + D + T + ++ +V++++ L
Sbjct: 67 KQKQVSPYDFTTAVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKL 117
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
FVT+ + Y N HIGH+ + D+ R+ + K +V+ + D HG + AA
Sbjct: 12 FVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRV-----KGERVFALTGTDEHGQKVAEAA 66
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTL 125
++ ++P +F ++ KK + D + T + ++ +V++++ L
Sbjct: 67 KQKQVSPYDFTTAVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKL 117
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 43.5 bits (101), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
+V PY +G+LH+GH+ Y D+ RF+ MQ +V DA G AA
Sbjct: 36 YVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQ-----GYEVLHPMGWDAFGLPAENAA 90
Query: 75 EKAGMTPKEF 84
K G+ PK++
Sbjct: 91 LKFGVHPKDW 100
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 43.5 bits (101), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
+V PY +G+LH+GH+ Y D+ RF+ MQ +V DA G AA
Sbjct: 36 YVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQ-----GYEVLHPMGWDAFGLPAENAA 90
Query: 75 EKAGMTPKEF 84
K G+ PK++
Sbjct: 91 LKFGVHPKDW 100
>pdb|1MEA|A Chain A, Methionyl-Trna Synthetase Zinc Binding Domain. 3d
Structure And Homology With Rubredoxin And Gag
Retroviral Proteins
pdb|1MED|A Chain A, Methionyl-Trna Synthetase Zinc Binding Domain. 3d
Structure And Homology With Rubredoxin And Gag
Retroviral Proteins
Length = 28
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 151 DRYIKGECPICNAKDQYGDFCECCSS 176
DR++KG CP C + DQYGD CE C +
Sbjct: 3 DRFVKGTCPKCKSPDQYGDNCEVCGA 28
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 41.6 bits (96), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
++ ++T A PY +G LH+GH Y D+ RF+ MQ N V F A G+ I+
Sbjct: 34 KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYN-----VLFPMAWHITGSPIV 88
Query: 72 IAAEK 76
AE+
Sbjct: 89 GIAER 93
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 41.6 bits (96), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
++ ++T A PY +G LH+GH Y D+ RF+ MQ N V F A G+ I+
Sbjct: 34 KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYN-----VLFPMAWHITGSPIV 88
Query: 72 IAAEK 76
AE+
Sbjct: 89 GIAER 93
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 41.2 bits (95), Expect = 5e-04, Method: Composition-based stats.
Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 9/162 (5%)
Query: 6 SEFKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDA 65
+E + + + + LPY +G LH+GH+ Y D+ R+Q M N V DA
Sbjct: 47 TEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKN-----VLQPIGWDA 101
Query: 66 HGAAIMIAAEKAGMTPKEFI-NNIS--SNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIY 122
G AA K P + +NI+ N+ K L GF + +T + E QK +
Sbjct: 102 FGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKML-GFGYDWSRELATCTPEYYRWEQKFF 160
Query: 123 DTLYXXXXXXXXXXXXQFFDPIKNIFLPDRYIKGECPICNAK 164
LY + + + ++ I G C C+ K
Sbjct: 161 TELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTK 202
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 40.0 bits (92), Expect = 0.001, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMT 80
PYANG LH+GH + I D VR++ MQ ++ D HG I A K G+
Sbjct: 57 PYANGNLHMGHALNKILKDFIVRYKTMQ-----GFYAPYVPGWDTHGLPIEQALTKKGVD 111
Query: 81 PKE 83
K+
Sbjct: 112 RKK 114
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 6/93 (6%)
Query: 13 RIFVTTALPYANGE-LHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
+ + PY +G LH+GH Y DI R++ + K V DA G
Sbjct: 37 KFYALDMFPYPSGSGLHVGHPEGYTATDIISRYKRL-----KGFDVLHPIGWDAFGLPAE 91
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFD 104
A +G P+ F N ++ L FD
Sbjct: 92 QYALSSGKHPQPFTLKNIENFRRQLKSLGFSFD 124
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 29.3 bits (64), Expect = 2.1, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMI 72
R V P ANG H+GH D++ R++ M+ R + D HG + +
Sbjct: 39 RYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGW-----DTHGLPVEL 93
Query: 73 AAEK 76
EK
Sbjct: 94 EVEK 97
>pdb|1PH2|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttg
pdb|1PH5|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttg(3dr)gg
Length = 459
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 181 TKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWA 220
T+ IN +S T P SSKH + ++ + LRKWA
Sbjct: 122 TQEINNQDAVSDTTPFSFSSKHATIEKNEISILQNLRKWA 161
>pdb|1PA6|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere
End-Binding Protein Complexed With Noncognate Ssdna
Ggggttttgagg
pdb|1PH3|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere
End-Binding Protein Complexed With Noncognate Ssdna
Ggggttttggtg
pdb|1PH4|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere
End-Binding Protein Complexed With Noncognate Ssdna
Ggggttttggcg
pdb|1PH7|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere
End-Binding Protein Complexed With Noncognate Ssdna
Ggggttttgigg
pdb|1PH8|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttgcgg
pdb|1PH9|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere
End-Binding Protein Complexed With Noncognate Ssdna
Ggggttttgagg
Length = 460
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 181 TKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWA 220
T+ IN +S T P SSKH + ++ + LRKWA
Sbjct: 122 TQEINNQDAVSDTTPFSFSSKHATIEKNEISILQNLRKWA 161
>pdb|1PH1|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttggggt
pdb|1PH6|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna
Ggggttttgtgg
pdb|1PHJ|A Chain A, Crystal Structure Of The Oxytricha Nova Telomere End-
Binding Protein Complexed With Noncognate Ssdna Gg(3dr)
Gttttgggg
Length = 461
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 181 TKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWA 220
T+ IN +S T P SSKH + ++ + LRKWA
Sbjct: 123 TQEINNQDAVSDTTPFSFSSKHATIEKNEISILQNLRKWA 162
>pdb|1OTC|A Chain A, The O. Nova Telomere End Binding Protein Complexed With
Single Strand Dna
pdb|1JB7|A Chain A, Dna G-Quartets In A 1.86 A Resolution Structure Of An
Oxytricha Nova Telomeric Protein-Dna Complex
pdb|1KIX|A Chain A, Dimeric Structure Of The O. Nova Telomere End Binding
Protein Alpha Subunit With Bound Ssdna
pdb|2I0Q|A Chain A, Crystal Structure Of A Telomere Single-Strand Dna-Protein
Complex From O. Nova With Full-Length Alpha And Beta
Telomere Proteins
Length = 495
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 181 TKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWA 220
T+ IN +S T P SSKH + ++ + LRKWA
Sbjct: 157 TQEINNQDAVSDTTPFSFSSKHATIEKNEISILQNLRKWA 196
>pdb|1K8G|A Chain A, Crystal Structure Of The N-Terminal Domain Of Oxytricha
Nova Telomere End Binding Protein Alpha Subunit Both
Uncomplexed And Complexed With Telomeric Ssdna
pdb|1K8G|B Chain B, Crystal Structure Of The N-Terminal Domain Of Oxytricha
Nova Telomere End Binding Protein Alpha Subunit Both
Uncomplexed And Complexed With Telomeric Ssdna
pdb|1K8G|C Chain C, Crystal Structure Of The N-Terminal Domain Of Oxytricha
Nova Telomere End Binding Protein Alpha Subunit Both
Uncomplexed And Complexed With Telomeric Ssdna
Length = 320
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 181 TKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWA 220
T+ IN +S T P SSKH + ++ + LRKWA
Sbjct: 157 TQEINNQDAVSDTTPFSFSSKHATIEKNEISILQNLRKWA 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,915,889
Number of Sequences: 62578
Number of extensions: 266952
Number of successful extensions: 690
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 637
Number of HSP's gapped (non-prelim): 37
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)