Query psy2399
Match_columns 232
No_of_seqs 191 out of 1838
Neff 7.5
Searched_HMMs 29240
Date Sat Aug 17 00:01:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2399.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2399hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rqg_A Methionyl-tRNA syntheta 100.0 1.1E-53 3.9E-58 414.4 21.2 208 12-228 2-210 (722)
2 3h99_A Methionyl-tRNA syntheta 100.0 8.2E-53 2.8E-57 398.5 19.4 214 7-229 13-226 (560)
3 3u1f_A Methionyl-tRNA syntheta 100.0 4.7E-47 1.6E-51 357.4 16.0 194 8-229 5-199 (542)
4 3kfl_A Methionyl-tRNA syntheta 100.0 3.8E-42 1.3E-46 325.8 15.6 193 9-229 23-216 (564)
5 2x1l_A Methionyl-tRNA syntheta 100.0 3.1E-40 1E-44 310.0 18.1 194 1-228 1-197 (524)
6 4dlp_A Aminoacyl-tRNA syntheta 100.0 4.8E-40 1.6E-44 309.6 18.8 186 11-229 24-210 (536)
7 4arc_A Leucine--tRNA ligase; l 100.0 4.4E-40 1.5E-44 323.6 16.2 175 9-220 50-226 (880)
8 1ile_A Ilers, isoleucyl-tRNA s 100.0 8.8E-41 3E-45 328.3 9.7 140 9-154 35-193 (821)
9 2d5b_A Methionyl-tRNA syntheta 100.0 3.2E-39 1.1E-43 301.3 18.2 180 12-228 3-183 (500)
10 2csx_A Methionyl-tRNA syntheta 100.0 1.2E-39 4E-44 304.3 13.4 183 11-229 4-187 (497)
11 2v0c_A Aminoacyl-tRNA syntheta 100.0 7.3E-39 2.5E-43 315.9 19.0 175 9-220 30-207 (878)
12 1gax_A Valrs, valyl-tRNA synth 100.0 1.2E-38 3.9E-43 313.7 18.1 213 9-229 31-384 (862)
13 1ffy_A Isoleucyl-tRNA syntheta 100.0 1.5E-38 5.2E-43 314.8 18.8 142 8-155 44-199 (917)
14 1wkb_A Leucyl-tRNA synthetase; 100.0 1.6E-34 5.3E-39 283.7 19.4 142 9-156 31-200 (810)
15 1wz2_A Leucyl-tRNA synthetase; 100.0 2.9E-34 1E-38 286.0 18.1 139 12-156 34-200 (967)
16 3c8z_A Cysteinyl-tRNA syntheta 99.9 2.9E-26 9.9E-31 209.7 13.7 126 12-145 38-168 (414)
17 3tqo_A Cysteinyl-tRNA syntheta 99.9 3.6E-26 1.2E-30 210.9 13.7 128 11-146 23-152 (462)
18 3sp1_A Cysteinyl-tRNA syntheta 99.9 1E-25 3.4E-30 209.2 12.3 125 12-145 43-177 (501)
19 1li5_A Cysrs, cysteinyl-tRNA s 99.9 4.2E-25 1.5E-29 204.4 13.7 124 12-145 23-148 (461)
20 2zue_A Arginyl-tRNA synthetase 99.8 1.2E-20 4.1E-25 180.4 10.0 134 9-148 116-311 (629)
21 1iq0_A Arginyl-tRNA synthetase 99.8 1.4E-19 4.9E-24 172.0 11.3 115 13-134 104-264 (592)
22 1irx_A Lysyl-tRNA synthetase; 99.8 1.6E-20 5.6E-25 176.2 1.0 112 14-133 21-151 (523)
23 1f7u_A Arginyl-tRNA synthetase 99.8 1.6E-18 5.5E-23 165.0 11.8 129 9-144 140-327 (607)
24 3fnr_A Arginyl-tRNA synthetase 99.7 8E-16 2.7E-20 142.2 13.4 127 10-144 28-200 (464)
25 1nzj_A Hypothetical protein YA 99.2 4.5E-12 1.5E-16 110.9 4.8 94 15-134 6-100 (298)
26 3aii_A Glutamyl-tRNA synthetas 99.2 1.2E-11 4E-16 115.9 5.4 94 15-134 97-190 (553)
27 1qtq_A GLNRS, protein (glutami 99.1 4.7E-11 1.6E-15 111.7 7.1 94 15-134 27-121 (553)
28 2o5r_A Glutamyl-tRNA synthetas 99.1 7.4E-11 2.5E-15 109.4 7.0 96 13-134 12-116 (481)
29 2hz7_A Glutaminyl-tRNA synthet 99.1 1.2E-10 4.1E-15 113.5 6.3 94 15-134 67-161 (851)
30 4g6z_A Glutamate-tRNA ligase; 99.0 1.7E-10 6E-15 106.8 6.6 94 15-134 26-120 (490)
31 3al0_C Glutamyl-tRNA(Gln) amid 99.0 2.1E-10 7.3E-15 108.7 6.7 94 15-134 130-232 (592)
32 2cfo_A Glutamyl-tRNA synthetas 99.0 1.6E-10 5.4E-15 107.4 5.6 94 15-134 2-96 (492)
33 3afh_A Glutamyl-tRNA synthetas 99.0 4.9E-10 1.7E-14 104.0 6.9 94 15-134 26-128 (488)
34 4gri_A Glutamate--tRNA ligase; 99.0 6.9E-10 2.4E-14 103.7 6.6 95 14-134 24-127 (512)
35 1j09_A Glutamyl-tRNA synthetas 98.9 6.1E-10 2.1E-14 102.9 5.7 94 15-134 2-104 (468)
36 2ja2_A Glutamyl-tRNA synthetas 98.9 2.9E-09 1E-13 98.9 7.3 94 15-134 7-109 (498)
37 3jxe_A Tryptophanyl-tRNA synth 96.7 0.0057 1.9E-07 55.1 8.9 93 10-119 70-166 (392)
38 2cyb_A Tyrosyl-tRNA synthetase 96.3 0.0062 2.1E-07 53.3 6.6 76 12-105 31-106 (323)
39 3a04_A Tryptophanyl-tRNA synth 96.3 0.0051 1.7E-07 55.0 5.8 80 9-105 66-145 (372)
40 3hzr_A Tryptophanyl-tRNA synth 96.1 0.013 4.4E-07 52.6 7.6 79 10-105 79-157 (386)
41 2g36_A Tryptophanyl-tRNA synth 96.0 0.02 6.8E-07 50.5 7.9 73 14-104 14-86 (340)
42 2dlc_X Tyrosyl-tRNA synthetase 95.9 0.0093 3.2E-07 53.7 5.8 78 11-105 37-118 (394)
43 2zp1_A Tyrosyl-tRNA synthetase 95.9 0.017 5.9E-07 50.3 7.0 80 12-110 27-106 (314)
44 3tzl_A Tryptophanyl-tRNA synth 95.9 0.0081 2.8E-07 52.6 4.9 66 22-105 11-76 (322)
45 3prh_A Tryptophanyl-tRNA synth 95.8 0.011 3.9E-07 53.0 5.5 88 12-118 30-124 (388)
46 2cya_A Tyrosyl-tRNA synthetase 95.8 0.021 7.1E-07 50.9 7.2 77 13-105 35-111 (364)
47 1i6k_A TRPRS, tryptophanyl-tRN 95.7 0.011 3.8E-07 51.9 5.3 65 22-104 9-73 (328)
48 1n3l_A Tyrosyl-tRNA synthetase 95.6 0.023 8E-07 50.6 6.9 74 15-105 37-114 (372)
49 3tze_A Tryptophanyl-tRNA synth 95.4 0.055 1.9E-06 48.8 8.7 79 10-105 98-177 (406)
50 3hv0_A Tryptophanyl-tRNA synth 95.4 0.047 1.6E-06 49.1 8.1 78 11-105 72-151 (393)
51 2ip1_A Tryptophanyl-tRNA synth 95.3 0.039 1.3E-06 50.2 7.5 79 11-105 100-179 (432)
52 2j5b_A Tyrosyl-tRNA synthetase 95.2 0.047 1.6E-06 48.2 7.6 79 12-105 39-117 (348)
53 1r6t_A Tryptophanyl-tRNA synth 95.1 0.042 1.5E-06 50.6 7.2 78 11-105 153-231 (477)
54 3foc_A Tryptophanyl-tRNA synth 95.1 0.078 2.7E-06 48.5 8.8 80 10-105 88-168 (451)
55 1yi8_B Tryptophanyl-tRNA synth 95.1 0.064 2.2E-06 47.4 8.0 73 13-104 22-95 (351)
56 2yy5_A Tryptophanyl-tRNA synth 95.0 0.021 7.2E-07 50.5 4.6 77 22-116 12-91 (348)
57 3vgj_A Tyrosyl-tRNA synthetase 94.9 0.059 2E-06 48.1 7.3 77 14-105 57-133 (373)
58 3i05_A Tryptophanyl-tRNA synth 94.9 0.054 1.9E-06 48.7 6.9 79 10-105 75-154 (395)
59 1r6u_A Tryptophanyl-tRNA synth 94.8 0.081 2.8E-06 48.2 8.0 79 10-105 105-184 (437)
60 3p0j_A Tyrosyl-tRNA synthetase 94.8 0.062 2.1E-06 51.7 7.5 78 12-105 39-117 (690)
61 3sz3_A Tryptophanyl-tRNA synth 94.7 0.038 1.3E-06 48.8 5.3 79 22-118 14-95 (341)
62 2cyc_A Tyrosyl-tRNA synthetase 94.4 0.056 1.9E-06 48.3 5.8 79 13-105 33-115 (375)
63 3n9i_A Tryptophanyl-tRNA synth 93.8 0.058 2E-06 47.6 4.7 65 22-105 23-88 (346)
64 2el7_A Tryptophanyl-tRNA synth 93.7 0.13 4.3E-06 45.3 6.6 69 22-104 9-77 (337)
65 1jil_A Tyrrs, tyrosyl-tRNA syn 90.3 0.14 4.7E-06 46.4 2.7 79 13-103 32-113 (420)
66 2kdx_A HYPA, hydrogenase/ureas 90.0 0.64 2.2E-05 34.4 5.8 65 83-148 7-82 (119)
67 1h3f_A Tyrosyl-tRNA synthetase 89.6 0.74 2.5E-05 41.8 7.0 43 11-63 35-78 (432)
68 3a43_A HYPD, hydrogenase nicke 89.4 0.65 2.2E-05 35.4 5.6 65 83-149 5-80 (139)
69 1lko_A Rubrerythrin all-iron(I 88.9 0.45 1.5E-05 38.3 4.5 35 111-146 128-162 (191)
70 2pid_A Tyrosyl-tRNA synthetase 88.7 0.3 1E-05 43.2 3.6 40 13-62 46-86 (356)
71 2ts1_A Tyrosyl-tRNA synthetase 88.5 0.29 1E-05 44.3 3.5 41 13-63 30-71 (419)
72 2yxn_A Tyrosyl-tRNA synthetase 87.9 0.42 1.4E-05 41.6 4.0 40 13-62 33-73 (322)
73 2jrp_A Putative cytoplasmic pr 87.3 0.12 4.1E-06 36.0 0.1 37 142-178 5-41 (81)
74 1y42_X Tyrosyl-tRNA synthetase 86.9 0.6 2E-05 41.8 4.5 40 13-62 64-104 (392)
75 3p0j_A Tyrosyl-tRNA synthetase 86.6 1.9 6.5E-05 41.4 8.1 75 23-110 390-466 (690)
76 3pwf_A Rubrerythrin; non heme 85.8 0.83 2.9E-05 36.0 4.4 21 111-133 113-133 (170)
77 3k7a_M Transcription initiatio 85.8 0.47 1.6E-05 41.6 3.2 37 146-182 12-56 (345)
78 2jan_A Tyrosyl-tRNA synthetase 85.1 0.73 2.5E-05 41.8 4.2 40 13-62 32-72 (432)
79 2lcq_A Putative toxin VAPC6; P 84.9 0.35 1.2E-05 37.7 1.8 32 167-199 131-162 (165)
80 1yuz_A Nigerythrin; rubrythrin 84.2 0.67 2.3E-05 37.6 3.2 31 11-42 13-43 (202)
81 2jne_A Hypothetical protein YF 83.6 0.31 1.1E-05 34.9 0.8 23 128-150 21-43 (101)
82 1dl6_A Transcription factor II 82.5 0.66 2.3E-05 30.0 2.0 25 157-181 13-43 (58)
83 4ayb_P DNA-directed RNA polyme 81.9 1.3 4.5E-05 27.3 3.0 30 170-199 5-37 (48)
84 2jrp_A Putative cytoplasmic pr 81.8 0.39 1.3E-05 33.3 0.8 17 157-176 33-49 (81)
85 1pft_A TFIIB, PFTFIIBN; N-term 81.8 0.7 2.4E-05 28.6 1.9 27 157-183 7-39 (50)
86 3v2d_5 50S ribosomal protein L 81.0 0.69 2.4E-05 30.2 1.7 21 156-176 31-51 (60)
87 2zjr_Z 50S ribosomal protein L 80.8 1 3.5E-05 29.4 2.5 21 157-177 32-52 (60)
88 3nw0_A Non-structural maintena 77.0 1.2 4.2E-05 37.0 2.4 80 114-194 134-226 (238)
89 3h0g_L DNA-directed RNA polyme 75.5 1.8 6.2E-05 28.5 2.4 33 170-202 23-55 (63)
90 1twf_L ABC10-alpha, DNA-direct 74.7 1.2 4.2E-05 29.9 1.5 31 170-200 30-60 (70)
91 2apo_B Ribosome biogenesis pro 74.5 1.5 5E-05 28.7 1.8 21 157-178 8-28 (60)
92 2jne_A Hypothetical protein YF 73.3 0.57 2E-05 33.6 -0.5 40 155-198 32-74 (101)
93 1e8j_A Rubredoxin; iron-sulfur 70.2 3.2 0.00011 26.1 2.6 25 170-194 5-45 (52)
94 6rxn_A Rubredoxin; electron tr 68.2 2.2 7.5E-05 26.2 1.5 25 170-194 6-39 (46)
95 3lcz_A YCZA, inhibitor of trap 67.4 3.6 0.00012 25.9 2.4 44 153-219 7-50 (53)
96 2kdx_A HYPA, hydrogenase/ureas 65.9 5.8 0.0002 29.0 3.7 26 170-195 75-100 (119)
97 3k1f_M Transcription initiatio 64.6 2.8 9.6E-05 33.4 1.8 35 149-183 15-57 (197)
98 1yk4_A Rubredoxin, RD; electro 62.8 2.9 9.8E-05 26.3 1.3 25 170-194 4-44 (52)
99 1lko_A Rubrerythrin all-iron(I 62.2 2 6.7E-05 34.4 0.5 25 170-195 157-181 (191)
100 2aus_D NOP10, ribosome biogene 62.2 3.4 0.00012 26.9 1.6 19 157-176 7-25 (60)
101 3a43_A HYPD, hydrogenase nicke 59.2 5.9 0.0002 30.0 2.7 18 185-202 107-125 (139)
102 2v3b_B Rubredoxin 2, rubredoxi 59.0 3.6 0.00012 26.2 1.3 25 170-194 5-45 (55)
103 4bbr_M Transcription initiatio 58.4 2.5 8.6E-05 37.0 0.6 33 149-181 15-55 (345)
104 3j21_g 50S ribosomal protein L 58.4 4.8 0.00016 25.3 1.7 22 156-177 15-37 (51)
105 4rxn_A Rubredoxin; electron tr 56.6 5.1 0.00017 25.4 1.6 25 170-194 5-45 (54)
106 1dx8_A Rubredoxin; electron tr 55.8 5.2 0.00018 26.8 1.7 26 169-194 8-49 (70)
107 2kn9_A Rubredoxin; metalloprot 54.6 4.6 0.00016 27.9 1.3 26 169-194 28-69 (81)
108 1s24_A Rubredoxin 2; electron 52.6 4 0.00014 28.6 0.7 26 169-194 36-77 (87)
109 2yxb_A Coenzyme B12-dependent 49.8 54 0.0019 24.9 7.0 82 10-131 17-98 (161)
110 3j20_Y 30S ribosomal protein S 49.3 5.5 0.00019 24.8 0.9 8 156-163 20-27 (50)
111 2lcq_A Putative toxin VAPC6; P 49.1 8.5 0.00029 29.6 2.2 25 139-163 132-156 (165)
112 3dvk_B Voltage-dependent R-typ 49.1 19 0.00067 18.6 2.8 19 28-46 2-21 (23)
113 3cw2_K Translation initiation 48.4 18 0.0006 27.5 3.8 45 141-194 87-133 (139)
114 2gmg_A Hypothetical protein PF 47.9 9.3 0.00032 27.6 2.0 26 170-195 69-94 (105)
115 1ccw_A Protein (glutamate muta 45.7 53 0.0018 24.1 6.2 80 12-131 4-83 (137)
116 1vq8_Z 50S ribosomal protein L 45.7 3.6 0.00012 28.5 -0.4 11 116-126 11-21 (83)
117 2pk7_A Uncharacterized protein 45.1 5.1 0.00018 26.7 0.3 22 157-178 10-36 (69)
118 2d74_B Translation initiation 42.6 19 0.00065 27.6 3.2 29 157-194 106-134 (148)
119 3ezx_A MMCP 1, monomethylamine 41.7 1E+02 0.0036 24.5 7.8 84 9-131 90-174 (215)
120 2hf1_A Tetraacyldisaccharide-1 41.1 5.1 0.00017 26.7 -0.2 23 157-179 10-37 (68)
121 2jr6_A UPF0434 protein NMA0874 40.9 5.2 0.00018 26.6 -0.2 22 157-178 10-36 (68)
122 3jyw_9 60S ribosomal protein L 40.4 18 0.00061 24.3 2.4 22 157-178 28-54 (72)
123 3cc2_Z 50S ribosomal protein L 38.9 6 0.0002 29.2 -0.2 8 170-177 80-87 (116)
124 3p8b_A DNA-directed RNA polyme 36.5 16 0.00054 25.1 1.7 42 171-219 26-67 (81)
125 3mwm_A ZUR, putative metal upt 35.5 37 0.0013 25.1 3.8 28 115-143 48-78 (139)
126 3s2u_A UDP-N-acetylglucosamine 35.4 41 0.0014 28.7 4.7 36 12-62 3-38 (365)
127 1k81_A EIF-2-beta, probable tr 34.7 7 0.00024 22.5 -0.3 10 185-194 21-30 (36)
128 3m7n_A Putative uncharacterize 34.5 10 0.00036 29.7 0.6 30 171-202 143-172 (179)
129 2js4_A UPF0434 protein BB2007; 34.3 6.8 0.00023 26.2 -0.5 23 157-179 10-37 (70)
130 2k53_A A3DK08 protein; NESG, C 34.2 11 0.00039 25.3 0.7 26 67-92 38-63 (76)
131 2k5e_A Uncharacterized protein 33.4 10 0.00035 25.3 0.3 27 67-93 40-66 (73)
132 3g5g_A Regulatory protein; tra 33.2 51 0.0017 22.7 4.1 69 21-107 13-88 (99)
133 1yfu_A 3-hydroxyanthranilate-3 32.5 18 0.00063 28.5 1.7 19 137-155 120-138 (174)
134 2jny_A Uncharacterized BCR; st 32.5 9.3 0.00032 25.3 -0.0 23 157-179 12-39 (67)
135 1zvf_A 3-hydroxyanthranilate 3 32.1 25 0.00087 27.7 2.4 19 137-155 122-140 (176)
136 3bvo_A CO-chaperone protein HS 32.0 28 0.00097 27.9 2.8 27 155-181 10-40 (207)
137 2w57_A Ferric uptake regulatio 31.1 54 0.0018 24.5 4.2 28 115-143 52-82 (150)
138 1wii_A Hypothetical UPF0222 pr 31.0 16 0.00055 25.3 1.0 57 154-219 22-78 (85)
139 2akl_A PHNA-like protein PA012 30.9 16 0.00056 27.4 1.1 24 156-179 28-55 (138)
140 1vk6_A NADH pyrophosphatase; 1 30.7 15 0.00053 30.7 1.1 12 169-180 126-137 (269)
141 1ma3_A SIR2-AF2, transcription 30.7 11 0.00039 31.2 0.2 24 170-193 125-155 (253)
142 2fe3_A Peroxide operon regulat 30.2 49 0.0017 24.5 3.8 27 115-142 56-85 (145)
143 2o03_A Probable zinc uptake re 29.8 58 0.002 23.6 4.1 27 115-142 45-74 (131)
144 1mzb_A Ferric uptake regulatio 29.4 49 0.0017 24.2 3.6 21 115-136 53-73 (136)
145 3eau_A Voltage-gated potassium 29.0 62 0.0021 27.2 4.7 47 86-133 100-149 (327)
146 3omt_A Uncharacterized protein 28.7 64 0.0022 20.2 3.7 42 68-109 22-70 (73)
147 1gve_A Aflatoxin B1 aldehyde r 28.6 73 0.0025 26.8 5.0 48 85-133 84-134 (327)
148 2lo3_A SAGA-associated factor 28.2 8.1 0.00028 23.2 -0.8 16 170-185 19-34 (44)
149 3erp_A Putative oxidoreductase 28.0 65 0.0022 27.6 4.7 48 85-133 134-184 (353)
150 1nui_A DNA primase/helicase; z 27.6 16 0.00054 30.0 0.6 10 155-164 14-23 (255)
151 3lut_A Voltage-gated potassium 27.4 67 0.0023 27.6 4.7 47 86-133 134-183 (367)
152 1nlt_A Protein YDJ1, mitochond 27.3 1E+02 0.0034 25.2 5.5 23 185-207 96-118 (248)
153 1y80_A Predicted cobalamin bin 26.9 1.9E+02 0.0066 22.4 7.1 80 10-130 87-167 (210)
154 3n6q_A YGHZ aldo-keto reductas 26.9 70 0.0024 27.2 4.7 48 85-133 113-163 (346)
155 1q1a_A HST2 protein; ternary c 26.9 11 0.00037 32.0 -0.6 33 170-204 138-180 (289)
156 3qt1_I DNA-directed RNA polyme 26.8 36 0.0012 25.4 2.4 12 138-149 23-34 (133)
157 3u6p_A Formamidopyrimidine-DNA 26.6 44 0.0015 27.9 3.2 20 94-113 178-197 (273)
158 3k7a_M Transcription initiatio 26.5 35 0.0012 29.4 2.7 26 170-195 23-52 (345)
159 2g2k_A EIF-5, eukaryotic trans 26.2 17 0.00058 28.6 0.5 9 157-165 98-106 (170)
160 1kbe_A Kinase suppressor of RA 25.8 21 0.0007 22.0 0.7 20 156-175 15-34 (49)
161 2bp1_A Aflatoxin B1 aldehyde r 25.8 75 0.0026 27.3 4.7 48 85-133 117-167 (360)
162 2hl0_A Threonyl-tRNA synthetas 25.8 2.2E+02 0.0074 21.5 7.0 61 80-141 52-120 (143)
163 1m2k_A Silent information regu 25.7 25 0.00086 28.9 1.5 11 185-195 142-152 (249)
164 1h7b_A Anaerobic ribonucleotid 25.5 31 0.0011 32.4 2.2 20 157-176 542-566 (605)
165 1pz1_A GSP69, general stress p 25.4 88 0.003 26.5 5.0 47 85-132 100-149 (333)
166 1ynp_A Oxidoreductase, AKR11C1 25.4 70 0.0024 27.0 4.3 48 85-133 114-164 (317)
167 2e9h_A EIF-5, eukaryotic trans 25.4 22 0.00076 27.5 1.0 16 70-85 46-61 (157)
168 1q14_A HST2 protein; histone d 25.3 14 0.00048 32.5 -0.2 34 170-205 146-189 (361)
169 2xig_A Ferric uptake regulatio 25.2 78 0.0027 23.6 4.1 27 115-142 61-90 (150)
170 3gmt_A Adenylate kinase; ssgci 25.2 23 0.00078 29.0 1.1 30 184-219 150-179 (230)
171 2iya_A OLEI, oleandomycin glyc 24.8 96 0.0033 26.5 5.2 28 29-64 23-50 (424)
172 1nee_A EIF-2-beta, probable tr 24.5 20 0.00069 27.1 0.6 14 71-84 48-61 (138)
173 1yc5_A NAD-dependent deacetyla 24.5 14 0.00048 30.4 -0.3 33 170-204 123-162 (246)
174 3iz5_m 60S ribosomal protein L 23.9 25 0.00086 24.7 1.0 8 170-177 56-63 (92)
175 1y7y_A C.AHDI; helix-turn-heli 23.9 1.3E+02 0.0045 18.4 5.1 36 71-106 30-72 (74)
176 2ct7_A Ring finger protein 31; 23.8 53 0.0018 22.2 2.7 37 137-178 23-61 (86)
177 3zyq_A Hepatocyte growth facto 23.5 1.2E+02 0.004 24.4 5.1 23 111-135 123-145 (226)
178 1ffk_W Ribosomal protein L37AE 23.4 18 0.00062 24.3 0.1 10 169-178 46-55 (73)
179 3lfp_A CSP231I C protein; tran 23.3 1.1E+02 0.0039 20.4 4.4 42 69-110 16-68 (98)
180 2gnr_A Conserved hypothetical 23.0 33 0.0011 25.9 1.6 13 118-131 33-45 (145)
181 1pyf_A IOLS protein; beta-alph 22.8 90 0.0031 26.0 4.5 46 86-132 101-149 (312)
182 2zvi_A 2,3-diketo-5-methylthio 22.8 1E+02 0.0035 27.6 4.9 67 19-100 343-420 (425)
183 5rub_A Rubisco (ribulose-1,5-b 22.7 27 0.00091 32.1 1.1 75 18-107 386-472 (490)
184 2heo_A Z-DNA binding protein 1 22.6 77 0.0026 20.1 3.2 26 115-142 39-64 (67)
185 2xvc_A ESCRT-III, SSO0910; cel 22.6 70 0.0024 20.4 2.7 19 115-134 39-57 (59)
186 3irb_A Uncharacterized protein 22.5 77 0.0026 23.7 3.6 37 118-164 33-70 (145)
187 3j21_i 50S ribosomal protein L 22.4 25 0.00086 24.2 0.7 9 170-178 55-63 (83)
188 3eyy_A Putative iron uptake re 22.3 88 0.003 23.1 3.9 29 114-143 51-82 (145)
189 3glr_A NAD-dependent deacetyla 22.1 19 0.00064 30.6 -0.0 33 170-204 141-180 (285)
190 1l8d_A DNA double-strand break 21.7 22 0.00075 25.2 0.3 10 155-164 47-56 (112)
191 2ewt_A BLDD, putative DNA-bind 21.7 94 0.0032 19.0 3.5 37 70-106 24-69 (71)
192 3u31_A SIR2A, transcriptional 21.7 28 0.00096 29.5 1.0 17 185-204 182-198 (290)
193 3ivp_A Putative transposon-rel 21.5 1E+02 0.0036 21.6 4.1 38 71-108 29-73 (126)
194 1adr_A P22 C2 repressor; trans 21.5 1.1E+02 0.0038 18.9 3.8 18 90-107 48-65 (76)
195 1gh9_A 8.3 kDa protein (gene M 21.4 12 0.00041 25.1 -1.1 21 185-207 21-41 (71)
196 1dxg_A Desulforedoxin; non-hem 21.3 20 0.00069 20.4 0.0 9 171-179 9-17 (36)
197 3izc_m 60S ribosomal protein R 21.3 30 0.001 24.3 0.9 8 170-177 56-63 (92)
198 2c2l_A CHIP, carboxy terminus 20.5 83 0.0028 25.3 3.7 59 155-220 208-272 (281)
199 3h0g_I DNA-directed RNA polyme 20.5 39 0.0013 24.3 1.5 10 171-180 7-16 (113)
200 3mhs_E SAGA-associated factor 20.4 26 0.00089 24.8 0.4 16 170-185 77-92 (96)
201 1h7b_A Anaerobic ribonucleotid 20.3 22 0.00077 33.4 0.1 25 168-193 540-566 (605)
202 4fc5_A TON_0340, putative unch 20.2 1.3E+02 0.0044 25.2 4.8 45 10-61 40-84 (270)
203 2k9q_A Uncharacterized protein 20.1 1E+02 0.0034 19.5 3.4 17 90-106 45-61 (77)
No 1
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=1.1e-53 Score=414.45 Aligned_cols=208 Identities=35% Similarity=0.678 Sum_probs=201.1
Q ss_pred CcEEEEcCCCCCCCcCCchHHHh-HHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q psy2399 12 RRIFVTTALPYANGELHIGHIME-YIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISS 90 (232)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~-~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~ 90 (232)
++|+||+|||||||.|||||+++ ++++|+++||+||+| ++|.|++|+|+||+||+.+|++.|++|+++++++.+
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G-----~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~ 76 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKG-----EDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHE 76 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTT-----CEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcC-----CceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 67999999999999999999998 999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCcCCccccCCChhHHHHHHHHHHHHHhhcCCEEecccceeeccCCCcccccceeccCCCCCCccccCCCc
Q psy2399 91 NRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDF 170 (232)
Q Consensus 91 ~~~~~l~~lgI~~d~~~~t~~~~~~~~v~~~~~~L~~~kG~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ 170 (232)
.|+++|++|||++|.|++|+++.|.+.++++|.+|+ ++|+||++.+.+|||+.|++||+|++|+|+||.|+.++++|++
T Consensus 77 ~~~~~~~~lgis~D~~~rT~d~~~~~~v~~~f~~L~-~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~ 155 (722)
T 1rqg_A 77 QIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAY-ENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQ 155 (722)
T ss_dssp HHHHHHHHHTCCCSEEEETTSHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTT
T ss_pred HHHHHHHHhCCCCCCCeeCCCHHHHHHHHHHHHHHH-HCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcch
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCccccCCcccCCCCccEEEEccceeEecCChhhHHHHHhhhhcCCCCCC
Q psy2399 171 CECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQP 228 (232)
Q Consensus 171 Ce~Cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~L~~~~~~~~l~~~~~~~~~~~p 228 (232)
|+.||+.+++.+|++|+|..||.+++++.++||||+| ++|+++|.+| ++...++|
T Consensus 156 c~~~G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l--~~~~~~l~~~-~~~~~wp~ 210 (722)
T 1rqg_A 156 CEVCGRPLTPEILINPRCAICGRPISFRDSAHYYIKM--QDFAERLKRW-IEKQPWKP 210 (722)
T ss_dssp CSSSCCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECG--GGTHHHHHHH-HHSSCCCH
T ss_pred hhhcccccChhhccCCcccCCCcEeEEEEeccEEEEh--HHHHHHHHHH-HHhCCCCH
Confidence 9999999999999999999999999999999999999 9999999999 54333443
No 2
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=8.2e-53 Score=398.50 Aligned_cols=214 Identities=46% Similarity=0.906 Sum_probs=204.9
Q ss_pred cCCCCCcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHH
Q psy2399 7 EFKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFIN 86 (232)
Q Consensus 7 ~~~~~~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~ 86 (232)
.+.++++++|++|||||||+|||||+|+++++|+++||+|++| ++|.+++|+|+||++|+..|++.|++++++++
T Consensus 13 ~~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G-----~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~ 87 (560)
T 3h99_A 13 MTQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRG-----HEVNFICADDAHGTPIMLKAQQLGITPEQMIG 87 (560)
T ss_dssp ----CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcC-----CeEEEeeeecCcCcHHHHHHHHhCCCHHHHHH
Confidence 3567789999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCcCCccccCCChhHHHHHHHHHHHHHhhcCCEEecccceeeccCCCcccccceeccCCCCCCcccc
Q psy2399 87 NISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQ 166 (232)
Q Consensus 87 ~~~~~~~~~l~~lgI~~d~~~~t~~~~~~~~v~~~~~~L~~~kG~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~ 166 (232)
++.+.|+++|++|||++|.|++|+++.|.+.++++|.+|. ++|+||++++.+|||+.++++|++++|+|+||.|+..++
T Consensus 88 ~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~-~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~ 166 (560)
T 3h99_A 88 EMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLK-ENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQ 166 (560)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEESSSHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSE
T ss_pred HHHHHHHHHHHHcCCCCCCceeCCCHHHHHHHHHHHHHHH-HCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCccc
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CCCcCccCCCCCCCccccCCcccCCCCccEEEEccceeEecCChhhHHHHHhhhhcCCCCCCC
Q psy2399 167 YGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPE 229 (232)
Q Consensus 167 ~g~~Ce~Cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~L~~~~~~~~l~~~~~~~~~~~p~ 229 (232)
+|++||+||+.+++.+|++|+|..||++++++.+++|||+| ++|+++|.+| +++++++|+
T Consensus 167 ~gd~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l--~~~~~~l~~~-~~~~~~~~~ 226 (560)
T 3h99_A 167 YGDNCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDL--PSFSEMLQAW-TRSGALQEQ 226 (560)
T ss_dssp ETTBCTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECG--GGGHHHHHHH-HHTSCSCHH
T ss_pred ccchhhhccccCChhhhcCCccccCCCCceEEecceEEEEH--HHHHHHHHHH-HHhCCCCHH
Confidence 99999999999999999999999999999999999999999 9999999999 666667664
No 3
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=4.7e-47 Score=357.37 Aligned_cols=194 Identities=21% Similarity=0.371 Sum_probs=179.4
Q ss_pred CCCCCcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHH
Q psy2399 8 FKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINN 87 (232)
Q Consensus 8 ~~~~~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~ 87 (232)
.+..++|+||+|+|||||.||||||++++++|+++||+||+| ++|.+++|+|+||+||+.+|++.|++|++++++
T Consensus 5 ~~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G-----~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~ 79 (542)
T 3u1f_A 5 MKVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKG-----ERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTA 79 (542)
T ss_dssp --CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTT-----CCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHH
T ss_pred CCCCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcC-----CCccccCccCcChHHHHHHHHHcCCCHHHHHHH
Confidence 456688999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCcCCccccCCChhHHHHHHHHHHHHHhhcCCEEecccceeeccCCCcccccceeccCCCCCCccccC
Q psy2399 88 ISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQY 167 (232)
Q Consensus 88 ~~~~~~~~l~~lgI~~d~~~~t~~~~~~~~v~~~~~~L~~~kG~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~ 167 (232)
+++.|++++++|||++|.|++|+++.|.+.|+++|.+|+ ++|+||++.+.++||+.|++||+|++|++.|+.||
T Consensus 80 ~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~-~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g----- 153 (542)
T 3u1f_A 80 VAGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLE-QKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDG----- 153 (542)
T ss_dssp HHHHHHHHHHHHTCCCSEEEETTCHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTS-----
T ss_pred HHHHHHHHHHHhCCccCcCccCCCHHHHHHHHHHHHHHh-hcCcEEecceeEEeeccCcccchhhhhhccccccC-----
Confidence 999999999999999999999999999999999999999 99999999999999999999999999999888764
Q ss_pred CCcCccCCCCCCCccccCCcccCCCCccEEEEccceeEecCChhhHHHHHhhhhc-CCCCCCC
Q psy2399 168 GDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIH-DKRLQPE 229 (232)
Q Consensus 168 g~~Ce~Cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~L~~~~~~~~l~~~~~~-~~~~~p~ 229 (232)
+.|+ .|..||++++++.++||||+| ++++++|.+|+.. +.++.|+
T Consensus 154 -~~~~--------------~~~~sg~~ve~~~~~~~f~~l--~~~~~~l~~~~~~~~~~~~P~ 199 (542)
T 3u1f_A 154 -NPCK--------------VSLESGHVVTWVSEENYMFRL--SAFRERLLEWYHANPGCIVPE 199 (542)
T ss_dssp -CEEE--------------EETTTCCBEEEEEEEEEEECG--GGGHHHHHHHHHHCTTSEESH
T ss_pred -cccc--------------ccCCCCCcceeeccccceecc--hhHHHHHHHHHhhcccccCCc
Confidence 3453 455689999999999999999 9999999999443 4566664
No 4
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=3.8e-42 Score=325.76 Aligned_cols=193 Identities=24% Similarity=0.395 Sum_probs=176.0
Q ss_pred CCCCcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHH
Q psy2399 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (232)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~ 88 (232)
+++++++||+|+|||||+|||||+|++|++|+++||+|++| ++|.+++|+|+||++|+.+|++.|++|+++++++
T Consensus 23 ~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G-----~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~ 97 (564)
T 3kfl_A 23 KKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKG-----EEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSV 97 (564)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHT-----CCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHH
T ss_pred cCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC-----CcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHH
Confidence 45678999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcCCccccCCChhHHHHHHHHHHHHHhhcCCEEecccceeeccCCCcccccceeccCCCCCCccccCC
Q psy2399 89 SSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYG 168 (232)
Q Consensus 89 ~~~~~~~l~~lgI~~d~~~~t~~~~~~~~v~~~~~~L~~~kG~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~g 168 (232)
.+.|+++|++|||++|.|++|+++.|.+.++++|.+|. ++|+||++++.+|||+.|++|++++++...|+.+ |
T Consensus 98 ~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~-~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~------g 170 (564)
T 3kfl_A 98 SSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLA-AKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRD------G 170 (564)
T ss_dssp HHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHH-HHTCEEEEEEEEEEETTTTEEECGGGEEEEECTT------S
T ss_pred HHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHHHHHH-HCCCEEEeeeeEEecCCcCCCCCHHHhccCcCCC------C
Confidence 99999999999999999999999999999999999999 9999999999999999999999999998877543 3
Q ss_pred CcCccCCCCCCCccccCCcccCCCCccEEEEccceeEecCChhhHHHHHhhhhc-CCCCCCC
Q psy2399 169 DFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIH-DKRLQPE 229 (232)
Q Consensus 169 ~~Ce~Cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~L~~~~~~~~l~~~~~~-~~~~~p~ 229 (232)
..|.. +..||.+++++.+++|||+| ++|+++|.+|+.+ +.++.|+
T Consensus 171 ~~c~~--------------~~~~g~~~~~~~~~~~f~~l--~~~~~~l~~~~~~~~~~i~P~ 216 (564)
T 3kfl_A 171 KPCKV--------------SLESGHVVTWVEEENYMFRL--SAFRERLLKYFHDHPNCIVPE 216 (564)
T ss_dssp CEEEE--------------ETTTSCBCEEEEEEEEEECG--GGGHHHHHHHHHHCTTSEESH
T ss_pred CEecc--------------ccCCCCccEEEecceeEEEH--HHHHHHHHHHHHhCCCccCCH
Confidence 33421 12479999999999999999 9999999999432 4567774
No 5
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=3.1e-40 Score=310.02 Aligned_cols=194 Identities=22% Similarity=0.358 Sum_probs=170.3
Q ss_pred CCCCCccCCCCCcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCC
Q psy2399 1 MKKHDSEFKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMT 80 (232)
Q Consensus 1 ~~~~~~~~~~~~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~ 80 (232)
|.-+.---.+++.++|+||+|||||+|||||+++++++|+++||+|++| ++|.+++|+|+||++|+.+|++.|++
T Consensus 1 ~~~~~~~~~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G-----~~V~~~~g~D~~G~~i~~~a~~~g~~ 75 (524)
T 2x1l_A 1 MAHHHHHHGGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDG-----YDVRYLTGTDVHGQKMAETAAKEGIP 75 (524)
T ss_dssp ----------CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEECCCSHHHHHHHHHHTSC
T ss_pred CCccccccCCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcC-----CceeeeCCcCcccHHHHHHHHHcCCC
Confidence 3344444567788999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCcCCccccCCChhHHHHHHHHHHHHHhhcCCEEecccceeeccCCCcccccceec-cCCC
Q psy2399 81 PKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIK-GECP 159 (232)
Q Consensus 81 ~~e~~~~~~~~~~~~l~~lgI~~d~~~~t~~~~~~~~v~~~~~~L~~~kG~iy~~~~~~~~~~~~~~~l~~~~v~-g~cp 159 (232)
|+++++++.+.|++++++|||++|.|++|+++.|.+.++++|.+|+ ++|+||++++.+|||+.|++++++++|+ |.
T Consensus 76 ~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~-~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~-- 152 (524)
T 2x1l_A 76 AAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKAIWKRMA-DAGDIYLDAYKGWYSIRDERFFTENETTEQP-- 152 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEETTTTEEECGGGEEECT--
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCCCCeecCCHHHHHHHHHHHHHHH-HCCCEEeeeeeeeccCccCccccHHHhccCC--
Confidence 9999999999999999999999999999999999999999999999 9999999999999999999999999985 32
Q ss_pred CCCccccCCCcCccCCCCCCCccccCCccc-CCCCccEEEEccceeEecCChhhHHHHHhhhhc-CCCCCC
Q psy2399 160 ICNAKDQYGDFCECCSSIYTPTKLINPYSI-LSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIH-DKRLQP 228 (232)
Q Consensus 160 ~c~~~~~~g~~Ce~Cg~~~~~~~l~~~~~~-~~g~~~~~~~~~~~f~~L~~~~~~~~l~~~~~~-~~~~~p 228 (232)
|| +.|. .||.+++++.+++|||+| ++|+++|.+++-+ +.++.|
T Consensus 153 --------------~G----------~~c~~~~g~~v~~~~~~qwF~~l--~~~~~~l~~~~~~~~~~i~p 197 (524)
T 2x1l_A 153 --------------DG----------TRIATETGAPVTWTEEQTYFFRL--SAYTDRLLALYEEHPEFIGP 197 (524)
T ss_dssp --------------TS----------CEEETTTCCBEEEEEEEEEEECG--GGSHHHHHHHHHHCGGGEES
T ss_pred --------------CC----------CccccccCCcceEEecCCeEeeH--HHHHHHHHHHHHhCCCeeCC
Confidence 22 2577 899999999999999999 9999999999332 234544
No 6
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=4.8e-40 Score=309.63 Aligned_cols=186 Identities=23% Similarity=0.358 Sum_probs=171.1
Q ss_pred CCcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q psy2399 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISS 90 (232)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~ 90 (232)
+++++||+|+|||||+|||||+|++|++|+++||+|++| ++|.+++|+|+||++|+..|++.|++|+++++++.+
T Consensus 24 ~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G-----~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~ 98 (536)
T 4dlp_A 24 REKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNG-----MDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTS 98 (536)
T ss_dssp CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcC-----CcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHH
Confidence 468999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCcCCccccCCChhHHHHHHHHHHHHHhhcCCEEecccceeeccCCCcccccceeccCCCCCCccccCCCc
Q psy2399 91 NRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDF 170 (232)
Q Consensus 91 ~~~~~l~~lgI~~d~~~~t~~~~~~~~v~~~~~~L~~~kG~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ 170 (232)
.|+++|++|||++|.|++|+++.|.+.++++|.+|. ++|+||++++.+|||+.|+++++++++... ..|.
T Consensus 99 ~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~-~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~--------~~g~- 168 (536)
T 4dlp_A 99 AFRRMAEVLNSSNDDYIRTSEERHYKASQAIWQAMV-ANGDIYKGGYAGWYSVRDEAYYGEEETEVR--------ADGV- 168 (536)
T ss_dssp HHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEETTTTEEECGGGCEEC--------TTSC-
T ss_pred HHHHHHHHcCCCCCcceeCCCHHHHHHHHHHHHHHH-HCCCEEEeceeeeecCCcCcccCHHHhhcC--------CCCC-
Confidence 999999999999999999999999999999999999 999999999999999999999999988631 1122
Q ss_pred CccCCCCCCCccccCCcccCCCCccEEEEccceeEecCChhhHHHHHhhhhc-CCCCCCC
Q psy2399 171 CECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIH-DKRLQPE 229 (232)
Q Consensus 171 Ce~Cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~L~~~~~~~~l~~~~~~-~~~~~p~ 229 (232)
.|..||.+++++.+++|||+| ++++++|.+|+.+ +.++.|+
T Consensus 169 ----------------~c~~~g~~~e~~~~~~~f~~l--~~~~~~l~~~~~~~~~~i~P~ 210 (536)
T 4dlp_A 169 ----------------RYGPQGTPVEWVEEESYFFRL--SAYQDKLLDLYENNPGFIMPA 210 (536)
T ss_dssp ----------------EECTTSSBCEEEEEEEEEECG--GGGHHHHHHHHHHCTTSEESH
T ss_pred ----------------cccCCCCcceEEeccceEEec--HHHHHHHHHHHHhCCCccCcH
Confidence 355688999999999999999 9999999999433 3466664
No 7
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=4.4e-40 Score=323.57 Aligned_cols=175 Identities=25% Similarity=0.306 Sum_probs=140.1
Q ss_pred CCCCcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHH
Q psy2399 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (232)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~ 88 (232)
.++++|+|+++||||||.|||||+++++++|+++||+||+| ++|.+++|+|+||+||+..|++.|++|.++++++
T Consensus 50 ~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G-----~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~ 124 (880)
T 4arc_A 50 ESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLG-----KNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDN 124 (880)
T ss_dssp TTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTT-----CEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcC-----CceEEecCccccCcHHHHHHHHcCCCHHHHHHHH
Confidence 45678999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcCC--ccccCCChhHHHHHHHHHHHHHhhcCCEEecccceeeccCCCcccccceeccCCCCCCcccc
Q psy2399 89 SSNRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQ 166 (232)
Q Consensus 89 ~~~~~~~l~~lgI~~d--~~~~t~~~~~~~~v~~~~~~L~~~kG~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~ 166 (232)
.+.|+++|++||+++| ++++|+++.|.+.++++|.+|+ ++|+||++.+.+|||+.|+++|++.+|
T Consensus 125 i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~-ekGliY~~~~~v~wcp~~~t~La~~ev------------ 191 (880)
T 4arc_A 125 IAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELY-KKGLVYKKTSAVNWCPNDQTVLANEQV------------ 191 (880)
T ss_dssp HHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHH-HTTCEEEEEECC---------------------------
T ss_pred HHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHH-HCCCEEEeceeEeecCCcCCEecchhh------------
Confidence 9999999999999655 8999999999999999999999 999999999999998888888776655
Q ss_pred CCCcCccCCCCCCCccccCCcccCCCCccEEEEccceeEecCChhhHHHHHhhh
Q psy2399 167 YGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWA 220 (232)
Q Consensus 167 ~g~~Ce~Cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~L~~~~~~~~l~~~~ 220 (232)
++++|..||.+++.+++++|||+| ++|+++|.++|
T Consensus 192 -----------------~~g~~~~~g~~ve~~~~~~~f~~i--~~y~~~Ll~~l 226 (880)
T 4arc_A 192 -----------------IDGCCWRCDTKVERKEIPQWFIKI--TAYADELLNDL 226 (880)
T ss_dssp --------------------------------CEEEEEECG--GGGHHHHHHHG
T ss_pred -----------------hcCcCcCCCCccEEEEccceEEee--chhHHHHHHHH
Confidence 445677788999999999999999 99999999994
No 8
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=8.8e-41 Score=328.30 Aligned_cols=140 Identities=19% Similarity=0.252 Sum_probs=132.9
Q ss_pred CCCCcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHc-CCCH------
Q psy2399 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA-GMTP------ 81 (232)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~-g~~~------ 81 (232)
+++++|+|++|||||||.|||||+++++++|+++||+||+| ++|.+++|+|+||+||+.+|++. |+++
T Consensus 35 ~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G-----~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~ 109 (821)
T 1ile_A 35 KGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRG-----YYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEA 109 (821)
T ss_dssp TTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTT-----CBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHH
T ss_pred CCCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcC-----CcccccccccCCCchHHHHHHHHhcccccchHhh
Confidence 46688999999999999999999999999999999999999 99999999999999999999985 8764
Q ss_pred ----------HHHHHHHHHHHHHHHhccC--CcCCccccCCChhHHHHHHHHHHHHHhhcCCEEecccceeeccCCCccc
Q psy2399 82 ----------KEFINNISSNRKKYLDGFY--IKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFL 149 (232)
Q Consensus 82 ----------~e~~~~~~~~~~~~l~~lg--I~~d~~~~t~~~~~~~~v~~~~~~L~~~kG~iy~~~~~~~~~~~~~~~l 149 (232)
.++++++.+.++++|++|| ++||++++|+++.|.+.++++|.+|+ ++|+||++.+.++|||.|+|+|
T Consensus 110 ~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~-~~Gliy~~~~~v~wcp~~~t~L 188 (821)
T 1ile_A 110 YGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLF-DRGLLYRDHKVVPYCPRCGTPL 188 (821)
T ss_dssp HCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHH-HTTCEEEECCEEEEETTTTEEC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHH-HcCCeeecCcceEecCCCCCcc
Confidence 4567788899999999999 79999999999999999999999999 9999999999999999999999
Q ss_pred cccee
Q psy2399 150 PDRYI 154 (232)
Q Consensus 150 ~~~~v 154 (232)
+|++|
T Consensus 189 ad~ev 193 (821)
T 1ile_A 189 SSHEV 193 (821)
T ss_dssp CHHHH
T ss_pred cHhHh
Confidence 99999
No 9
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=3.2e-39 Score=301.35 Aligned_cols=180 Identities=22% Similarity=0.439 Sum_probs=165.6
Q ss_pred CcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2399 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (232)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~ 91 (232)
++++|++|+|||||+|||||+|+++++|+++||+|++| ++|.+++|+|+||++|+.+|++.|+++.++++++.+.
T Consensus 3 ~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G-----~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 77 (500)
T 2d5b_A 3 KVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDG-----YRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGR 77 (500)
T ss_dssp CEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCC-----CceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhccCCcCCccccCCChhHHHHHHHHHHHHHhhcCCEEecccceeeccCCCcccccceeccCCCCCCccccCCCcC
Q psy2399 92 RKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFC 171 (232)
Q Consensus 92 ~~~~l~~lgI~~d~~~~t~~~~~~~~v~~~~~~L~~~kG~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~C 171 (232)
|+++|++|||++|.+++|+++.|.+.++++|.+|+ ++|+||++++.++||+.|+++++++++
T Consensus 78 ~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~~~~L~-~~G~iy~~~~~~~~~~~~~~~~~~~~l----------------- 139 (500)
T 2d5b_A 78 FKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVY-EAGDIYYGEYEGLYCVSCERFYTEKEL----------------- 139 (500)
T ss_dssp HHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEETTTTEECCTTTS-----------------
T ss_pred HHHHHHHhCCcCCCCcccCCHHHHHHHHHHHHHHH-HCCCEEecceEEecCCCcCcccCchhc-----------------
Confidence 99999999999999999999999999999999999 999999999999998888888876654
Q ss_pred ccCCCCCCCccccCCcccCCCCccEEEEccceeEecCChhhHHHHHhhhhc-CCCCCC
Q psy2399 172 ECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIH-DKRLQP 228 (232)
Q Consensus 172 e~Cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~L~~~~~~~~l~~~~~~-~~~~~p 228 (232)
+++.|+.||.+++.+.+++|||+| ++|+++|.+++-+ +.++.|
T Consensus 140 ------------~~g~c~~~~~~v~~~~~~~wf~~l--~~~~~~l~~~~~~~~~~~~p 183 (500)
T 2d5b_A 140 ------------VEGLCPIHGRPVERRKEGNYFFRM--EKYRPWLQEYIQENPDLIRP 183 (500)
T ss_dssp ------------BTTBCTTTCSBCEEEEEEEEEECG--GGGHHHHHHHHHTCTTSEES
T ss_pred ------------cCCcCCCCCCeeeEEecCceEEEc--HHHHHHHHHHHHhCCCeeCC
Confidence 334567788899999999999999 9999999999433 345544
No 10
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=1.2e-39 Score=304.28 Aligned_cols=183 Identities=23% Similarity=0.387 Sum_probs=142.2
Q ss_pred CCcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q psy2399 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISS 90 (232)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~ 90 (232)
+++++|++|+|||||+|||||+++++++|+++||+|++| ++|.++.|+|+||++|+.+|++.|++|+++++++.+
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G-----~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 78 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRD-----YDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAE 78 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcC-----CceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHH
Confidence 478999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCcCCccccCCChhHHHHHHHHHHHHHhhcCCEEecccceeeccCCCcccccceeccCCCCCCccccCCCc
Q psy2399 91 NRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDF 170 (232)
Q Consensus 91 ~~~~~l~~lgI~~d~~~~t~~~~~~~~v~~~~~~L~~~kG~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ 170 (232)
.|+++|++|||++|.+++|+++.|.+.++++|.+|+ ++|+||++++.++||+.++++++++++..
T Consensus 79 ~~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~~~~L~-~~G~iY~~~~~~~~~~~~~~~~~~~~~~~-------------- 143 (497)
T 2csx_A 79 RFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFEECY-KRGDIYLGEYEGWYCVGCEEFKSEAELAE-------------- 143 (497)
T ss_dssp HHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHH-HTTCEEEEEC---------------------------------
T ss_pred HHHHHHHHhCCcCCCCccCCCHHHHHHHHHHHHHHH-HCCCEEecceeeccCcccCeEccHHHhcc--------------
Confidence 999999999999999999999999999999999999 99999999999999999999988887742
Q ss_pred CccCCCCCCCccccCCcccCCCCccEEEEccceeEecCChhhHHHHHhhhhc-CCCCCCC
Q psy2399 171 CECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIH-DKRLQPE 229 (232)
Q Consensus 171 Ce~Cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~L~~~~~~~~l~~~~~~-~~~~~p~ 229 (232)
.+.|..||.+++.+.+++|||+| ++|+++|.+++-+ +.++.|+
T Consensus 144 --------------~~~c~~~~~~~~~~~~~~wf~~l--~~~~~~l~~~~~~~~~~~~p~ 187 (497)
T 2csx_A 144 --------------DHTCPIHQKKCEYIKEPSYFFRL--SKYQDKLLELYEKNPEFIQPD 187 (497)
T ss_dssp ----------------------------CCEEEEECT--TSSHHHHHHHHHHCTTSBCSH
T ss_pred --------------CCCCCCCCCCCeEEecCceEEEc--HHHHHHHHHHHHhCCCeeCcH
Confidence 04466677788999999999999 9999999999433 3466664
No 11
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=7.3e-39 Score=315.92 Aligned_cols=175 Identities=22% Similarity=0.258 Sum_probs=161.8
Q ss_pred CCCCcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHH
Q psy2399 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (232)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~ 88 (232)
+++++++|+++||||||.|||||+++++++|+++||+||+| ++|.+++|+|+||+||+.+|++.|++|.++++++
T Consensus 30 ~~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G-----~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~ 104 (878)
T 2v0c_A 30 GGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQG-----YEVLHPMGWDAFGLPAENAALKFGVHPKDWTYAN 104 (878)
T ss_dssp C---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHT-----CEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcC-----CceEeecccCcccHHHHHHHHHcCCCHHHHHHHH
Confidence 45677999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcCC--ccccCCChhHHHHHHHHHHHHHhhcCCEEecccceeeccCCCcccccceeccCCCCCCcccc
Q psy2399 89 SSNRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQ 166 (232)
Q Consensus 89 ~~~~~~~l~~lgI~~d--~~~~t~~~~~~~~v~~~~~~L~~~kG~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~ 166 (232)
.+.|+++|++|||++| ++++|+++.|.+.++++|.+|+ ++|+||++.+.++||+.|+++|++.+|+
T Consensus 105 ~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~-~kGliY~~~~~v~w~p~~~t~La~~ev~----------- 172 (878)
T 2v0c_A 105 IRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMW-EKGLAYRAKGLVNWCPKCQTVLANEQVV----------- 172 (878)
T ss_dssp HHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEETTTTEEECGGGEE-----------
T ss_pred HHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHH-HCCCEEEcceeEEEeCCCCCCcCHHHHh-----------
Confidence 9999999999999655 8999999999999999999999 9999999999999999999999998884
Q ss_pred CCCcCccCCCCCCCccccCCcccC-CCCccEEEEccceeEecCChhhHHHHHhhh
Q psy2399 167 YGDFCECCSSIYTPTKLINPYSIL-SGTKPIIKSSKHFFFKLSDKRCIDFLRKWA 220 (232)
Q Consensus 167 ~g~~Ce~Cg~~~~~~~l~~~~~~~-~g~~~~~~~~~~~f~~L~~~~~~~~l~~~~ 220 (232)
++.|.. ||++++.+++++|||+| ++|+++|.+++
T Consensus 173 ------------------~g~~~~~~~~~~~~~~~~~~f~~l--~~~~~~L~~~l 207 (878)
T 2v0c_A 173 ------------------EGRCWRHEDTPVEKRELEQWYLRI--TAYAERLLKDL 207 (878)
T ss_dssp ------------------TTEESSCTTCBCEEEEEEEEEECG--GGGHHHHHHTT
T ss_pred ------------------cCCCcccCCCceEEEecceeeEec--chhHHHHHHHh
Confidence 223445 78899999999999999 99999999994
No 12
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=1.2e-38 Score=313.70 Aligned_cols=213 Identities=16% Similarity=0.180 Sum_probs=181.6
Q ss_pred CCCCcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHH----cCCCHH--
Q psy2399 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK----AGMTPK-- 82 (232)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~----~g~~~~-- 82 (232)
+++++|+|++|||||||.|||||+++++++|+++||+||+| ++|.+++|||+||++++.++++ .|+++.
T Consensus 31 ~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G-----~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~ 105 (862)
T 1gax_A 31 SGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRG-----FEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDL 105 (862)
T ss_dssp CCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTT-----SEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCC
T ss_pred CCCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCC-----CccccccccCCCCcHHHHHHHHHHHHcCCChHHc
Confidence 45678999999999999999999999999999999999999 9999999999999999999985 466543
Q ss_pred ----------HHHHHHHHHHHHHHhccCCcCC--ccccCCChhHHHHHHHHHHHHHhhcCCEEecccceeeccCCCcccc
Q psy2399 83 ----------EFINNISSNRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLP 150 (232)
Q Consensus 83 ----------e~~~~~~~~~~~~l~~lgI~~d--~~~~t~~~~~~~~v~~~~~~L~~~kG~iy~~~~~~~~~~~~~~~l~ 150 (232)
++++++.+.++++|++||+++| +.+.|+++.|.+.|+++|.+|+ ++|+||++.+.++|||.|+|+|+
T Consensus 106 ~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~-~kGliYrg~~~v~wcp~~~T~Ls 184 (862)
T 1gax_A 106 GREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYY-HEGLAYRAPRLVNWCPRCETTLS 184 (862)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHH-TTSSEEEECCEEEEETTTTEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHH-HCCCEEecccccccCCCcCcccc
Confidence 5689999999999999998555 5556999999999999999999 99999999999999999999999
Q ss_pred cceec-----c------------------------------------------------CCCCCCcc-------------
Q psy2399 151 DRYIK-----G------------------------------------------------ECPICNAK------------- 164 (232)
Q Consensus 151 ~~~v~-----g------------------------------------------------~cp~c~~~------------- 164 (232)
|.+|+ | .||.|+..
T Consensus 185 d~EV~~~e~~g~~~~v~f~~~~~~~l~v~TTrPeTl~g~~avav~P~~~ry~~l~G~~~~~P~~~~~ipii~~~~V~~~~ 264 (862)
T 1gax_A 185 DLEVETEPTPGKLYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIPILADPAVEKDF 264 (862)
T ss_dssp GGGEEECCEEEEEEEEECCCSSSCCCEEEESCSGGGTTCCCEEECSSCCTTCSCTTCCCBCTTCCCBCCEEECTTCCTTS
T ss_pred ccccccccccceEEEEEEEecCCCEEEEEeCCccccccceEEEECCCccHHHHHcCCEEECCCCCCeeeEEeccccccCC
Confidence 99986 1 38888753
Q ss_pred ------------------------------ccCCCcCccC--CCCC------------------------CCccccCCcc
Q psy2399 165 ------------------------------DQYGDFCECC--SSIY------------------------TPTKLINPYS 188 (232)
Q Consensus 165 ------------------------------~~~g~~Ce~C--g~~~------------------------~~~~l~~~~~ 188 (232)
+..|..|++| |.+. .+.....|.|
T Consensus 265 GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c 344 (862)
T 1gax_A 265 GTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATC 344 (862)
T ss_dssp SSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEE
T ss_pred CCcceEecCCCCchHHHHHHHcCCCccceeCCCCccccccCCcccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCee
Confidence 2457788888 6422 1112356899
Q ss_pred cCCCCccEEEEccceeEecCChhhHHHHHhhhhc-CCCCCCC
Q psy2399 189 ILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIH-DKRLQPE 229 (232)
Q Consensus 189 ~~~g~~~~~~~~~~~f~~L~~~~~~~~l~~~~~~-~~~~~p~ 229 (232)
..||.+++.+.++|||+++ +++++++.+++.+ ...+.|+
T Consensus 345 ~R~~~~i~~~~~~qWFv~~--~~~~~~~l~~v~~~~~~~~P~ 384 (862)
T 1gax_A 345 SRCGTPIEYAIFPQWWLRM--RPLAEEVLKGLRRGDIAFVPE 384 (862)
T ss_dssp TTTCSBCCEEECCEEEECH--HHHHHHHHHHHHHTCCEESSS
T ss_pred cCCCCeEEEEecceEEEEh--HHHHHHHHHHHHcCCceEcCH
Confidence 9999999999999999999 9999999999422 2244554
No 13
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=1.5e-38 Score=314.84 Aligned_cols=142 Identities=27% Similarity=0.363 Sum_probs=135.7
Q ss_pred CCCCCcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCH------
Q psy2399 8 FKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTP------ 81 (232)
Q Consensus 8 ~~~~~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~------ 81 (232)
++++++|+|++|||||||.|||||+++++++|+++||+||+| ++|.+++|||+||+||+.+|++.|+++
T Consensus 44 ~~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G-----~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~ 118 (917)
T 1ffy_A 44 NKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQG-----FYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTA 118 (917)
T ss_dssp TTTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTT-----CBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHH
T ss_pred ccCCCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCC-----CCCCCcccCchhhHHHHHHHHHcCCCchhCCHH
Confidence 356778999999999999999999999999999999999999 999999999999999999999999875
Q ss_pred ------HHHHHHHHHHHHHHHhccCC--cCCccccCCChhHHHHHHHHHHHHHhhcCCEEecccceeeccCCCcccccce
Q psy2399 82 ------KEFINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRY 153 (232)
Q Consensus 82 ------~e~~~~~~~~~~~~l~~lgI--~~d~~~~t~~~~~~~~v~~~~~~L~~~kG~iy~~~~~~~~~~~~~~~l~~~~ 153 (232)
.++++++.+.++++|++||+ +||++++|+++.|.+.++++|.+|+ ++|+||++.++++|||.|+|+|+|++
T Consensus 119 ~f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~-~kGliYr~~~~v~wcp~~~T~Lae~e 197 (917)
T 1ffy_A 119 EFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMA-DKGLIYKGKKPVYWSPSSESSLAEAE 197 (917)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEETTTTEECCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHH-HcCCeEecccceeccCCCCcCcchhh
Confidence 56888999999999999999 6889999999999999999999999 99999999999999999999999999
Q ss_pred ec
Q psy2399 154 IK 155 (232)
Q Consensus 154 v~ 155 (232)
|+
T Consensus 198 Ve 199 (917)
T 1ffy_A 198 IE 199 (917)
T ss_dssp EE
T ss_pred hh
Confidence 96
No 14
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.6e-34 Score=283.66 Aligned_cols=142 Identities=23% Similarity=0.308 Sum_probs=131.5
Q ss_pred CCCCcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHc-----------
Q psy2399 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA----------- 77 (232)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~----------- 77 (232)
+++++|+|++|||||||+|||||+++++++|+++||+||+| ++|.+++|+|+||+||+..|++.
T Consensus 31 ~~~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G-----~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~ 105 (810)
T 1wkb_A 31 PKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQG-----YNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIY 105 (810)
T ss_dssp CGGGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHT-----CEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCC-----CccCcCCccCCCCChHHHHHHHhcccCchHHHHH
Confidence 34678999999999999999999999999999999999999 99999999999999999888642
Q ss_pred -------------CCCHHHHHHHHHHHHHHHHhccCCcCC--ccccCCC--hhHHHHHHHHHHHHHhhcCCEEeccccee
Q psy2399 78 -------------GMTPKEFINNISSNRKKYLDGFYIKFD--NWYSTDS--IENIDLVQKIYDTLYNKAKLIINKKINQF 140 (232)
Q Consensus 78 -------------g~~~~e~~~~~~~~~~~~l~~lgI~~d--~~~~t~~--~~~~~~v~~~~~~L~~~kG~iy~~~~~~~ 140 (232)
+.++.++++++.+.++++|++|||++| ++++|++ +.|.+.++++|.+|+ ++|+||++.+.+|
T Consensus 106 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~-~~Gliy~~~~~v~ 184 (810)
T 1wkb_A 106 RDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLK-EKGYIVKGAHRVR 184 (810)
T ss_dssp HHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHH-HTTCEEEEEEEEE
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHH-HCCCEEECCeeee
Confidence 246788999999999999999999666 7788999 999999999999999 9999999999999
Q ss_pred eccCCCcccccceecc
Q psy2399 141 FDPIKNIFLPDRYIKG 156 (232)
Q Consensus 141 ~~~~~~~~l~~~~v~g 156 (232)
|||.|+|+|++.+|+.
T Consensus 185 ~~~~~~t~La~~ev~~ 200 (810)
T 1wkb_A 185 WDPVVGTPLGDHDLME 200 (810)
T ss_dssp EETTTTEECCTTCCSB
T ss_pred ccCCcCCCccHHHHhc
Confidence 9999999999998853
No 15
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.9e-34 Score=285.96 Aligned_cols=139 Identities=23% Similarity=0.329 Sum_probs=130.1
Q ss_pred CcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHc--------------
Q psy2399 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA-------------- 77 (232)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~-------------- 77 (232)
++|+|++|||||||.|||||+++++++|+++||+||+| ++|.+++|||+||+||+.+|++.
T Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G-----~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~ 108 (967)
T 1wz2_A 34 KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQG-----YNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDV 108 (967)
T ss_dssp GCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTT-----CCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred CcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCC-----CccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHh
Confidence 78999999999999999999999999999999999999 99999999999999999988752
Q ss_pred -C---------CCHHHHHHHHHHHHHHHHhccCC--cCCccccCCC--hhHHHHHHHHHHHHHhhcCCEEecccceeecc
Q psy2399 78 -G---------MTPKEFINNISSNRKKYLDGFYI--KFDNWYSTDS--IENIDLVQKIYDTLYNKAKLIINKKINQFFDP 143 (232)
Q Consensus 78 -g---------~~~~e~~~~~~~~~~~~l~~lgI--~~d~~~~t~~--~~~~~~v~~~~~~L~~~kG~iy~~~~~~~~~~ 143 (232)
| .+|.++++++.+.++++|++||+ +|++.+.|++ +.|.+.++++|.+|+ ++|+||++.+.++|||
T Consensus 109 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~-~kGliyr~~~~v~wcp 187 (967)
T 1wz2_A 109 YKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLK-EKGYIVKGAHRVRWDP 187 (967)
T ss_dssp SCCCHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTT-TTTCEEECCCCCEECT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHH-HCCCEEEeceEecccC
Confidence 3 35788899999999999999998 5667889999 999999999999999 9999999999999999
Q ss_pred CCCcccccceecc
Q psy2399 144 IKNIFLPDRYIKG 156 (232)
Q Consensus 144 ~~~~~l~~~~v~g 156 (232)
.|+|+|+|.+|+.
T Consensus 188 ~~~T~Lad~Ev~~ 200 (967)
T 1wz2_A 188 VVGTPLGDHDLME 200 (967)
T ss_dssp TTSCBCCSSSCSS
T ss_pred CCCCCcchhhhcc
Confidence 9999999998753
No 16
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.94 E-value=2.9e-26 Score=209.66 Aligned_cols=126 Identities=11% Similarity=0.126 Sum_probs=116.1
Q ss_pred CcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2399 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (232)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~ 91 (232)
.+..+....|||||++||||+|++|++|+++||+|++| ++|.+++|+|+||++|+.+|++.|+++.++++++.+.
T Consensus 38 ~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G-----~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~ 112 (414)
T 3c8z_A 38 PTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAG-----HTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQL 112 (414)
T ss_dssp SEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcC-----CCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33444444678899999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhccCCc-CCccccCCChhHHHHHHHHHHHHHhhcCCEEecc----cceeeccCC
Q psy2399 92 RKKYLDGFYIK-FDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKK----INQFFDPIK 145 (232)
Q Consensus 92 ~~~~l~~lgI~-~d~~~~t~~~~~~~~v~~~~~~L~~~kG~iy~~~----~~~~~~~~~ 145 (232)
|+++|++|||. +|.|++|++ |...++++|.+|. ++|++|+++ ..+||+.+.
T Consensus 113 ~~~~~~~Lgi~~~d~~~r~t~--~~~~~~~~~~~L~-~kG~~Y~~~~~~e~~~~f~~~~ 168 (414)
T 3c8z_A 113 FREDMAALRVLPPHDYVAATD--AIAEVVEMVEKLL-ASGAAYIVEDAEYPDVYFRADA 168 (414)
T ss_dssp HHHHHHHTTCCCCSEEEEGGG--CHHHHHHHHHHHH-HHTSEEECSCSSCCCEEECTTS
T ss_pred HHHHHHHcCCCCCcceecccc--hHHHHHHHHHHHH-HCCCEEeccCCcCCCEEEEchh
Confidence 99999999998 999999984 8899999999999 999999988 788987664
No 17
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.93 E-value=3.6e-26 Score=210.94 Aligned_cols=128 Identities=15% Similarity=0.146 Sum_probs=118.1
Q ss_pred CCcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q psy2399 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISS 90 (232)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~ 90 (232)
++++.+...+|||+|.+||||+|++|++|+++||+|++| ++|.++.|+||+|+||+.+|++.|+++.++++++.+
T Consensus 23 ~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~G-----y~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~ 97 (462)
T 3tqo_A 23 SGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRG-----YEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQ 97 (462)
T ss_dssp TTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTT-----CEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcC-----CceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 345556666789999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCcCCccc-cCCChhHHHHHHHHHHHHHhhcCCEEec-ccceeeccCCC
Q psy2399 91 NRKKYLDGFYIKFDNWY-STDSIENIDLVQKIYDTLYNKAKLIINK-KINQFFDPIKN 146 (232)
Q Consensus 91 ~~~~~l~~lgI~~d~~~-~t~~~~~~~~v~~~~~~L~~~kG~iy~~-~~~~~~~~~~~ 146 (232)
.|++++++|||.++.+. +++ +|...++++|.+|. ++|++|+. .+.+|||+.+-
T Consensus 98 ~f~~d~~~LgI~~d~~~praT--e~i~~i~~~i~~L~-ekG~aY~~~~g~Vyfdv~~~ 152 (462)
T 3tqo_A 98 ILHEDEKALRVLSPDQEPRAT--QYVPEIIKLIQKLL-DNQYAYTGQNGDVFFDVRRF 152 (462)
T ss_dssp HHHHHHHHHTCCCCSBCCBGG--GCHHHHHHHHHHHH-HHTSEEECTTSCEEECTTTC
T ss_pred HHHHHHHHcCCCCCccccChh--hHHHHHHHHHHHHH-HCCCEEEecCCcEEeccccc
Confidence 99999999999987665 666 79999999999999 99999998 68999998764
No 18
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.93 E-value=1e-25 Score=209.21 Aligned_cols=125 Identities=17% Similarity=0.216 Sum_probs=99.8
Q ss_pred CcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecC---------C-ChhhHHHHHHHHHcCCCH
Q psy2399 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICA---------D-DAHGAAIMIAAEKAGMTP 81 (232)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g---------~-D~~G~~i~~~a~~~g~~~ 81 (232)
.++||+ +|||+|.+||||+|++|++|+++||+|++| ++|.|+.| + |+||+||+.+|++.|++|
T Consensus 43 v~~Yvc--gPTvYg~~HIGHar~~v~~Dvl~R~lr~~G-----y~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~ 115 (501)
T 3sp1_A 43 VKVYAC--GPTVYNYAHIGNFRTYIFGDLLIKTLRFLG-----YKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTV 115 (501)
T ss_dssp EEEEEC--CCBCSSCCCHHHHHHHHHHHHHHHHHHHHT-----CCEEEEEEEBCSCCC-------------------CCH
T ss_pred ceEEeC--CCcCCCCcchhhhHHHHHHHHHHHHHHHcC-----CceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCH
Confidence 345555 567779999999999999999999999999 99999954 4 677999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCcCCccccCCChhHHHHHHHHHHHHHhhcCCEEecccceeeccCC
Q psy2399 82 KEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIK 145 (232)
Q Consensus 82 ~e~~~~~~~~~~~~l~~lgI~~d~~~~t~~~~~~~~v~~~~~~L~~~kG~iy~~~~~~~~~~~~ 145 (232)
.++++++.+.|++++++|||.+|.+.++ ..+|...++++|.+|+ ++|++|++++.+|||+.+
T Consensus 116 ~e~a~~~~~~f~~d~~~Lgi~~d~~~~~-~t~hi~~v~~~i~~L~-~kG~aY~~~g~Vyf~v~~ 177 (501)
T 3sp1_A 116 YEISEFFTEAFFNDCRKLNIVYPDKVLV-ASKHIPIMIEVVKILE-EKKITYFSNGNVYFDTSC 177 (501)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCSEEEE-GGGCHHHHHHHHHHHH-HTTCEEEETTEEEECGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcccC-cchHHHHHHHHHHHHH-HCCCEEEeCCcEEecCCc
Confidence 9999999999999999999999988765 4689999999999999 999999999999999987
No 19
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.92 E-value=4.2e-25 Score=204.41 Aligned_cols=124 Identities=15% Similarity=0.145 Sum_probs=115.5
Q ss_pred CcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2399 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (232)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~ 91 (232)
.+++|+ .|+|+|++||||+|++|++|+++||+|++| ++|.++.++||+|.+|..+|++.|.+++++++++.+.
T Consensus 23 v~~yv~--gPt~y~~~HiGHar~~v~~D~l~R~lr~~G-----~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~ 95 (461)
T 1li5_A 23 VGMYVC--GITVYDLCHIGHGRTFVAFDVVARYLRFLG-----YKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAE 95 (461)
T ss_dssp EEEEEC--CCBSSSCCBHHHHHHHHHHHHHHHHHHHHT-----CEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred eeEEEc--CCcCCCCCcccccHHHHHHHHHHHHHHHcC-----CCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345555 566779999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhccCCcC-CccccCCChhHHHHHHHHHHHHHhhcCCEEec-ccceeeccCC
Q psy2399 92 RKKYLDGFYIKF-DNWYSTDSIENIDLVQKIYDTLYNKAKLIINK-KINQFFDPIK 145 (232)
Q Consensus 92 ~~~~l~~lgI~~-d~~~~t~~~~~~~~v~~~~~~L~~~kG~iy~~-~~~~~~~~~~ 145 (232)
|++++++|||.+ |.+++++ +|.+.+++++++|. ++|++|+. ++.+|||+.+
T Consensus 96 f~~~~~~LgI~~~d~~~r~t--~~~~~~~~~i~~L~-~~G~aY~~~~g~v~f~~~~ 148 (461)
T 1li5_A 96 MHKDFDALNILRPDMEPRAT--HHIAEIIELTEQLI-AKGHAYVADNGDVMFDVPT 148 (461)
T ss_dssp HHHHHHHTTCCCCSBCCBGG--GCHHHHHHHHHHHH-HTTSEEECTTSCEEECGGG
T ss_pred HHHHHHHcCCCCCccccccc--chHHHHHHHHHHHH-HCCCEEEecCCCEEEeccc
Confidence 999999999997 8888988 48999999999999 99999999 8999998875
No 20
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.82 E-value=1.2e-20 Score=180.40 Aligned_cols=134 Identities=15% Similarity=0.114 Sum_probs=111.4
Q ss_pred CCCCcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHH-------------------
Q psy2399 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAA------------------- 69 (232)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~------------------- 69 (232)
..+++++|....|||||++||||+|++|++|+++|+++..| ++|.++..++|+|.+
T Consensus 116 ~~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G-----~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~ 190 (629)
T 2zue_A 116 GKGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLG-----YEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIM 190 (629)
T ss_dssp TTTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHH
T ss_pred CCCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcC-----CCceEEecccchhHHHHHHHHHHHHhCCcchhhh
Confidence 35678999999999999999999999999999999999999 999999988887665
Q ss_pred --------------------HHHHHHHcCCCH--------------------HHHHHHHHHHHHHHHhccCCcCCccccC
Q psy2399 70 --------------------IMIAAEKAGMTP--------------------KEFINNISSNRKKYLDGFYIKFDNWYST 109 (232)
Q Consensus 70 --------------------i~~~a~~~g~~~--------------------~e~~~~~~~~~~~~l~~lgI~~d~~~~t 109 (232)
+...+++.+.+| +++++.+.+.|++++++|||++|.|+++
T Consensus 191 ~~~~~~~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D~~~~e 270 (629)
T 2zue_A 191 NELRERGLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLVWE 270 (629)
T ss_dssp HHHHHHTSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCSEEEEH
T ss_pred hhhcccccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCccccccCc
Confidence 334444444444 7889999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhcCCEEe---cccceeeccCCCcc
Q psy2399 110 DSIENIDLVQKIYDTLYNKAKLIIN---KKINQFFDPIKNIF 148 (232)
Q Consensus 110 ~~~~~~~~v~~~~~~L~~~kG~iy~---~~~~~~~~~~~~~~ 148 (232)
++..|...++.++++|. ++|++|+ ++..++|+..+..|
T Consensus 271 s~~~~~~~v~~vi~~L~-~kG~~y~~~~ge~~Ga~~v~~~~~ 311 (629)
T 2zue_A 271 SDIVRRKLFEIALELLS-KNENFYIPSDGKYRGAFVMDLRKL 311 (629)
T ss_dssp HHHHHTTHHHHHHHHHH-TSTTEECCSSSTTTTCEEEECTTT
T ss_pred CccccchhHHHHHHHHH-HCCCccccccCCcCCcEEEECccc
Confidence 97667899999999999 9999992 34445544444444
No 21
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.80 E-value=1.4e-19 Score=172.01 Aligned_cols=115 Identities=20% Similarity=0.233 Sum_probs=99.8
Q ss_pred cEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHH--------------------
Q psy2399 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMI-------------------- 72 (232)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~-------------------- 72 (232)
+++|..+.|||||++||||+|++|++|+++|++++.| ++|.++..++|.|.++..
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G-----~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~ 178 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAG-----REVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDH 178 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTT-----EEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcC-----CceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcch
Confidence 6899999999999999999999999999999999999 999998777777643321
Q ss_pred --------HH------------------HHcCCCHHHHHHHHHHHHHHHHhccCCcCCccccCCChhHHHHHHHHHHHHH
Q psy2399 73 --------AA------------------EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLY 126 (232)
Q Consensus 73 --------~a------------------~~~g~~~~e~~~~~~~~~~~~l~~lgI~~d~~~~t~~~~~~~~v~~~~~~L~ 126 (232)
.+ .+.|. .+++++.+.+.|+++|++|||++|.|.+|++..|...+++++++|.
T Consensus 179 ~~g~~y~~~~~~~~~~~~~~~a~~~~~~~e~g~-~~~~~~~~~~~~~~~~~~LgI~~D~~~~es~~~~~~~v~~~~~~L~ 257 (592)
T 1iq0_A 179 FAGRAYVRLHQDPEYERLQPAIEEVLHALERGE-LREEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLE 257 (592)
T ss_dssp HHHHHHHHHHHCTTTGGGHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHhCCchH-HHHHHHHHHHHHHHHHHHcCCEeEEeccCCcccccchHHHHHHHHH
Confidence 11 22343 3889999999999999999999999999997667899999999999
Q ss_pred hhcCCEEe
Q psy2399 127 NKAKLIIN 134 (232)
Q Consensus 127 ~~kG~iy~ 134 (232)
++|++|+
T Consensus 258 -~kG~~y~ 264 (592)
T 1iq0_A 258 -QSPHVFR 264 (592)
T ss_dssp -TSTTEEC
T ss_pred -HCCCccc
Confidence 9999993
No 22
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.78 E-value=1.6e-20 Score=176.18 Aligned_cols=112 Identities=14% Similarity=0.119 Sum_probs=98.3
Q ss_pred EEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhh--HHH---HHHHHHc--CCCH-----
Q psy2399 14 IFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHG--AAI---MIAAEKA--GMTP----- 81 (232)
Q Consensus 14 ~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G--~~i---~~~a~~~--g~~~----- 81 (232)
.+|+.+.|||||+|||||+|+++.+|+++||++++| ++|.|+.++||+| .+| ...|.+. |+++
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g-----~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~ 95 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKG-----YEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPD 95 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTT-----CEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCC
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcC-----CCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCc
Confidence 566666789999999999999999999999999999 9999999999999 666 4444444 8887
Q ss_pred -----HHHHHHHHHHHHHHHhccCCcCCccccCCChhHHH-HHHHHHHHHHhhcC-CEE
Q psy2399 82 -----KEFINNISSNRKKYLDGFYIKFDNWYSTDSIENID-LVQKIYDTLYNKAK-LII 133 (232)
Q Consensus 82 -----~e~~~~~~~~~~~~l~~lgI~~d~~~~t~~~~~~~-~v~~~~~~L~~~kG-~iy 133 (232)
+++++++.+.|+++|++|||++|.+ ++++. |.. .+++++.+|. ++| .||
T Consensus 96 p~~~~~~~~~~~~~~~~~~l~~Lgi~~D~~-~~se~-~~~g~~~~~i~~L~-~~G~~iy 151 (523)
T 1irx_A 96 PWGCHESYAEHFMRKFEEEVEKLGIEVDLL-YASEL-YKRGEYSEEIRLAF-EKRDKIM 151 (523)
T ss_dssp TTSSSSSHHHHHHHHHHHHHHTTTCCCEEE-EHHHH-HHTTTTHHHHHHHH-HTHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHcCCCceEE-echhh-ccchHHHHHHHHHH-HchHHHH
Confidence 8899999999999999999999988 77632 777 8999999999 999 665
No 23
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.76 E-value=1.6e-18 Score=165.00 Aligned_cols=129 Identities=15% Similarity=0.117 Sum_probs=109.5
Q ss_pred CCCCcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHH------------------
Q psy2399 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI------------------ 70 (232)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i------------------ 70 (232)
..+++++|....|||+|++||||+|++|++|+++|+++..| ++|..+..++|+|.++
T Consensus 140 ~~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G-----~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~ 214 (607)
T 1f7u_A 140 VENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLG-----WEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVK 214 (607)
T ss_dssp SSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTT-----CEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHH
T ss_pred cCCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcC-----CCeeEEEeecCcchHHHHHHHHHHHhCchhhccC
Confidence 35678999999999999999999999999999999999999 9999999988876654
Q ss_pred ------------------------------HHHHHH------cCCC-----HHHHHHHHHHHHHHHHhccCCcCCccccC
Q psy2399 71 ------------------------------MIAAEK------AGMT-----PKEFINNISSNRKKYLDGFYIKFDNWYST 109 (232)
Q Consensus 71 ------------------------------~~~a~~------~g~~-----~~e~~~~~~~~~~~~l~~lgI~~d~~~~t 109 (232)
...|++ .|.+ .+++++...+.|++++++|||.+|.|.++
T Consensus 215 ~~i~~l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~E 294 (607)
T 1f7u_A 215 DPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGE 294 (607)
T ss_dssp CHHHHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEG
T ss_pred CChHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCc
Confidence 222333 2443 35678889999999999999999999988
Q ss_pred CChhHHHHHHHHHHHHHhhcCCEEecccceeeccC
Q psy2399 110 DSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPI 144 (232)
Q Consensus 110 ~~~~~~~~v~~~~~~L~~~kG~iy~~~~~~~~~~~ 144 (232)
++ .+...+..+++.|. ++|++|+.++.+|++..
T Consensus 295 S~-~~~~~~~~vi~~L~-~kG~~ye~dGa~~~~~~ 327 (607)
T 1f7u_A 295 SQ-VSKESMLKAIDLFK-EKGLTHEDKGAVLIDLT 327 (607)
T ss_dssp GG-CCHHHHHHHHHHHH-HTTCEEEETTEEEEEGG
T ss_pred ch-hhhhHHHHHHHHHH-hCCCEEEECCcEEEEec
Confidence 85 23378899999999 99999999999998654
No 24
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.65 E-value=8e-16 Score=142.21 Aligned_cols=127 Identities=17% Similarity=0.161 Sum_probs=104.1
Q ss_pred CCCcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHH-------HH--cCCC
Q psy2399 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA-------EK--AGMT 80 (232)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a-------~~--~g~~ 80 (232)
.+++++|...+|||+|++||||+|+++++|+++|++++.| ++|.-...+.|.|.++...+ .+ .|.+
T Consensus 28 ~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G-----~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~ 102 (464)
T 3fnr_A 28 KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLG-----YKFNTEYYVNDAGNQIYLLGLSILLSVKESILHEN 102 (464)
T ss_dssp CSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTT-----CEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcC-----CceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCC
Confidence 5578999999999999999999999999999999999999 99999999999998874332 11 1211
Q ss_pred ---H-------------H---------------------HHHHHHHHHHHHHHhccCCcCCccccCCChhHHHHHHHHHH
Q psy2399 81 ---P-------------K---------------------EFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYD 123 (232)
Q Consensus 81 ---~-------------~---------------------e~~~~~~~~~~~~l~~lgI~~d~~~~t~~~~~~~~v~~~~~ 123 (232)
| + ...+...+.+++++++|||.+|.|..+++. |. .+.++++
T Consensus 103 ~~~p~~~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~Ess~-~~-~~~~vv~ 180 (464)
T 3fnr_A 103 VEYPEQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSERSY-YD-ALNATLE 180 (464)
T ss_dssp CCCCSSCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEEGGGG-ST-THHHHHH
T ss_pred CCCchhhcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecCHHHH-HH-HHHHHHH
Confidence 0 0 112334568999999999999999888653 44 8999999
Q ss_pred HHHhhcCCEEecccceeeccC
Q psy2399 124 TLYNKAKLIINKKINQFFDPI 144 (232)
Q Consensus 124 ~L~~~kG~iy~~~~~~~~~~~ 144 (232)
.|. ++|++|++++..|++..
T Consensus 181 ~L~-~~g~~~e~dGa~~~~~~ 200 (464)
T 3fnr_A 181 SLK-EHKGIYEQEGKIWLASS 200 (464)
T ss_dssp HHH-HTTCEEEETTEEEECGG
T ss_pred HHH-HCCCEEEeCCeEEEEec
Confidence 999 99999999999998654
No 25
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.23 E-value=4.5e-12 Score=110.92 Aligned_cols=94 Identities=16% Similarity=0.247 Sum_probs=73.5
Q ss_pred EEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2399 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (232)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~~~~ 94 (232)
+++--+|+|||.|||||+|+++....++| + +.+.|+.-+||.+ ++.-...+.+.|.+
T Consensus 6 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar-----~-----~~g~~ilRieDtD-------------~~R~~~~~~~~I~~ 62 (298)
T 1nzj_A 6 YIGRFAPSPSGELHFGSLIAALGSYLQAR-----A-----RQGRWLVRIEDID-------------PPREVPGAAETILR 62 (298)
T ss_dssp CEEEECCCTTSCCCHHHHHHHHHHHHHHH-----H-----TTCEEEEEECCSC-------------GGGSCTTHHHHHHH
T ss_pred eEEEECcCCCCCccHHHHHHHHHHHHHHH-----h-----cCCeEEEEEecCC-------------chhhHHHHHHHHHH
Confidence 67778899999999999999996666665 3 4445555555533 22334678899999
Q ss_pred HHhccCCcCCc-cccCCChhHHHHHHHHHHHHHhhcCCEEe
Q psy2399 95 YLDGFYIKFDN-WYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (232)
Q Consensus 95 ~l~~lgI~~d~-~~~t~~~~~~~~v~~~~~~L~~~kG~iy~ 134 (232)
+|++|||+||. .++.| ++.+..++++++|. ++|++|.
T Consensus 63 dL~~LGl~~D~~~~~qS--er~~~y~~~~~~L~-~~G~aY~ 100 (298)
T 1nzj_A 63 QLEHYGLHWDGDVLWQS--QRHDAYREALAWLH-EQGLSYY 100 (298)
T ss_dssp HHHHTTCCCSSCCEEGG--GCHHHHHHHHHHHH-HTTCEEE
T ss_pred HHHHcCCCCCCCCeeee--CCHHHHHHHHHHHH-HcCCccc
Confidence 99999999997 55666 57789999999999 9999997
No 26
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.19 E-value=1.2e-11 Score=115.86 Aligned_cols=94 Identities=16% Similarity=0.163 Sum_probs=77.8
Q ss_pred EEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2399 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (232)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~~~~ 94 (232)
+++--+|+|||.||||||+++++.+.++| + +.+.++.-+||.+ ++.-...+.+.|.+
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar-----~-----~~G~~iLRieDtD-------------~~R~~~e~~~~I~e 153 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYAR-----K-----YDGRLILRIEDTD-------------PRRVDPEAYDMIPA 153 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH-----H-----TTCEEEEEECCCC-------------GGGCCTTHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----H-----cCCEEEEEECcCC-------------cccccHHHHHHHHH
Confidence 77888999999999999999999777776 3 4555666666543 22335678899999
Q ss_pred HHhccCCcCCccccCCChhHHHHHHHHHHHHHhhcCCEEe
Q psy2399 95 YLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (232)
Q Consensus 95 ~l~~lgI~~d~~~~t~~~~~~~~v~~~~~~L~~~kG~iy~ 134 (232)
+|++||+.||..++.| +|.+...+++.+|. ++|++|.
T Consensus 154 dL~wLGl~wd~~~~qS--dr~~~y~~~~~~Li-~~G~AY~ 190 (553)
T 3aii_A 154 DLEWLGVEWDETVIQS--DRMETYYEYTEKLI-ERGGAYV 190 (553)
T ss_dssp HHHHHTCCCSEEEEGG--GGHHHHHHHHHHHH-HTTSEEE
T ss_pred HHHHcCCCCCCCcccc--cCHHHHHHHHHHHH-HcCCcee
Confidence 9999999999887887 68999999999999 9999996
No 27
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=99.14 E-value=4.7e-11 Score=111.75 Aligned_cols=94 Identities=17% Similarity=0.032 Sum_probs=74.1
Q ss_pred EEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2399 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (232)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~~~~ 94 (232)
+++--+|+|||.|||||||++++.+.+||- +...++.-+||.+ +......+.+.|.+
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~----------~gG~fiLRieDTD-------------~~R~~~e~~~~I~e 83 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQD----------YKGQCNLRFDDTN-------------PVKEDIEYVESIKN 83 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHHH----------TTCEEEEEECCCC-------------GGGCCHHHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHH----------cCCEEEEEECCCC-------------chhcCHHHHHHHHH
Confidence 678889999999999999999998888872 3344554455432 23346788899999
Q ss_pred HHhccCCcCC-ccccCCChhHHHHHHHHHHHHHhhcCCEEe
Q psy2399 95 YLDGFYIKFD-NWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (232)
Q Consensus 95 ~l~~lgI~~d-~~~~t~~~~~~~~v~~~~~~L~~~kG~iy~ 134 (232)
+|++|||+|| ..++.| +|.....+...+|. ++|++|.
T Consensus 84 dL~wLGl~wde~~~~qS--er~~~~~~~a~~Li-~~G~AY~ 121 (553)
T 1qtq_A 84 DVEWLGFHWSGNVRYSS--DYFDQLHAYAIELI-NKGLAYV 121 (553)
T ss_dssp HHHHTTCCCSSSCEEGG--GGHHHHHHHHHHHH-HTTSEEE
T ss_pred HHHHcCCCCCCCCeehc--ccHHHHHHHHHHHH-HCCCcee
Confidence 9999999995 455666 57777778889999 9999996
No 28
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.11 E-value=7.4e-11 Score=109.45 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=76.4
Q ss_pred cEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2399 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92 (232)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~~ 92 (232)
.++++...|+|||+|||||+|+.+.+|.+||. ..| .-++-+-.+| ++...+.+.+.|
T Consensus 12 ~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G-----~~iLRieDtD----------------~~r~~~~~~~~I 68 (481)
T 2o5r_A 12 HMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKG-----KFILRIEDTD----------------LERSEREYEEKL 68 (481)
T ss_dssp -CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTC-----EEEECBCCSS----------------CCSGGGHHHHHH
T ss_pred eEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCC-----eEEEEEecCC----------------ccccHHHHHHHH
Confidence 46788889999999999999999999999997 567 6665554333 334456677778
Q ss_pred HHHHhccCCcCCcc---------ccCCChhHHHHHHHHHHHHHhhcCCEEe
Q psy2399 93 KKYLDGFYIKFDNW---------YSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (232)
Q Consensus 93 ~~~l~~lgI~~d~~---------~~t~~~~~~~~v~~~~~~L~~~kG~iy~ 134 (232)
.++|++||++||.. ++.| ++.+..++++.+|. ++|.+|.
T Consensus 69 ~~~l~wlGl~~de~p~~gg~~g~y~QS--~r~~~y~~~a~~L~-~~G~aY~ 116 (481)
T 2o5r_A 69 MESLRWLGLLWDEGPDVGGDHGPYRQS--ERVEIYREHAERLV-KEGKAYY 116 (481)
T ss_dssp HHHHHHHTCCCSBBTTTBCTTCCCBGG--GGHHHHHHHHHHHH-HTTSEEE
T ss_pred HHHHHHcCCCCCCCcccCCCCCceeee--ccHHHHHHHHHHHH-HCCCeeE
Confidence 89999999999963 3444 57888999999999 9999984
No 29
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=99.06 E-value=1.2e-10 Score=113.55 Aligned_cols=94 Identities=16% Similarity=0.128 Sum_probs=75.8
Q ss_pred EEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2399 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (232)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~~~~ 94 (232)
+++--+|+|||.|||||||++++...++|- +.+.|+.-+||.+ ++.....+.+.|.+
T Consensus 67 v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~----------~gG~fiLRIEDTD-------------~~R~~~e~~~~Ile 123 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFASLLDFNTARQ----------YGGQFNLRMDDTN-------------PELARQEYVDSIAD 123 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHH----------TTCEEEEEECCCC-------------TTTCCHHHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHH----------cCCEEEEEECcCC-------------cccccHHHHHHHHH
Confidence 778889999999999999999998777773 4445555555543 22336688899999
Q ss_pred HHhccCCcCC-ccccCCChhHHHHHHHHHHHHHhhcCCEEe
Q psy2399 95 YLDGFYIKFD-NWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (232)
Q Consensus 95 ~l~~lgI~~d-~~~~t~~~~~~~~v~~~~~~L~~~kG~iy~ 134 (232)
+|++|||+|| ..++.| +|.....+++.+|. ++|++|.
T Consensus 124 dL~wLGl~wde~~~~qS--er~d~y~e~a~~LI-~~G~AY~ 161 (851)
T 2hz7_A 124 DLKWLGLDWGEHFYYAS--DYFDRYYAYAEQLI-RQGDAYV 161 (851)
T ss_dssp HHHHHTCCCTTCEEEGG--GGHHHHHHHHHHHH-HTTSEEE
T ss_pred HHHHcCCCCCCCcccHh--hhHHHHHHHHHHHH-HCCCcEe
Confidence 9999999995 456666 68999999999999 9999996
No 30
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=99.05 E-value=1.7e-10 Score=106.82 Aligned_cols=94 Identities=16% Similarity=0.182 Sum_probs=74.7
Q ss_pred EEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2399 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (232)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~~~~ 94 (232)
+++--+|+|||.|||||+|+++..+.++|. ..| .-++-+-.+|. +.....+.+.|.+
T Consensus 26 v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~--~~G-----~filRieDtD~----------------~R~~~~~~~~i~~ 82 (490)
T 4g6z_A 26 VRTRFAPSPTGFIHLGNIRSALYPWAFARK--MKG-----TFVLRIEDTDV----------------ERSSQEAVDAILE 82 (490)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHHH--TTC-----EEEEEECCCCG----------------GGCCHHHHHHHHH
T ss_pred ceEEeCCCCCCCccHHHHHHHHHHHHHHHh--cCC-----eEEEEeCCCCc----------------ccccHHHHHHHHH
Confidence 667778999999999999999999988884 344 44544444442 2335678899999
Q ss_pred HHhccCCcCCcc-ccCCChhHHHHHHHHHHHHHhhcCCEEe
Q psy2399 95 YLDGFYIKFDNW-YSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (232)
Q Consensus 95 ~l~~lgI~~d~~-~~t~~~~~~~~v~~~~~~L~~~kG~iy~ 134 (232)
+|++|||+||.- ++.| ++.+..++++.+|. ++|++|.
T Consensus 83 dl~wlGl~~d~~~~~qS--~r~~~y~~~~~~Li-~~G~aY~ 120 (490)
T 4g6z_A 83 GMAWLGLDYDEGPYYQM--QRMDRYREVLAQMQ-EKGLVYP 120 (490)
T ss_dssp HHHHTTCCCSEEEEEGG--GCHHHHHHHHHHHH-HTTSEEE
T ss_pred HHHHcCCCCCCCCcccc--cCHHHHHHHHHHHH-HCCCEEe
Confidence 999999999973 5555 58888999999999 9999985
No 31
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.03 E-value=2.1e-10 Score=108.69 Aligned_cols=94 Identities=15% Similarity=0.180 Sum_probs=73.1
Q ss_pred EEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2399 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (232)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~~~~ 94 (232)
+++--+|+|||+|||||+|+.+..+.+||. ..| . |+.-+||. ++..-...+.+.|.+
T Consensus 130 v~~RFaPsPTG~LHiG~artAl~n~l~Ar~--~~G-----~---~ilRieDt-------------D~~r~~~~~~~~I~~ 186 (592)
T 3al0_C 130 VRVRFAPSPTGHLHVGGARTALFNWMFARK--EGG-----K---FILRIEDT-------------DTERSSREYEQQILE 186 (592)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHH--HTC-----E---EEECBCCC-------------CSSSCCHHHHHHHHH
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHHHHHh--cCC-----c---EEEEecCc-------------ChhhccHHHHHHHHH
Confidence 445555999999999999999999999985 445 3 33334442 233446677888999
Q ss_pred HHhccCCcCCcc---------ccCCChhHHHHHHHHHHHHHhhcCCEEe
Q psy2399 95 YLDGFYIKFDNW---------YSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (232)
Q Consensus 95 ~l~~lgI~~d~~---------~~t~~~~~~~~v~~~~~~L~~~kG~iy~ 134 (232)
+|++|||+||.- ++.| ++.+..++++.+|. ++|++|.
T Consensus 187 dL~wlGl~~D~~~~~gG~~gp~~qS--er~~~y~~~~~~L~-~~G~aY~ 232 (592)
T 3al0_C 187 SLRWCGLDWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLV-EDKRAYY 232 (592)
T ss_dssp HHHHTTCCCSBBTTTBCTTCCCBST--TCHHHHHHHHHHHH-HTTTEEE
T ss_pred HHHHcCCCCCCCCCcCCCCCCeeee--CCHHHHHHHHHHHH-HcCCceE
Confidence 999999999983 4555 46688999999999 9999997
No 32
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.03 E-value=1.6e-10 Score=107.44 Aligned_cols=94 Identities=20% Similarity=0.229 Sum_probs=73.2
Q ss_pred EEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2399 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (232)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~~~~ 94 (232)
+++--+|+|||.|||||+|+++....++|- +.+.|+.-+||.+ +......+.+.|.+
T Consensus 2 v~~RFAPSPtG~lHiG~artal~n~l~Ar~----------~~G~filRieDtD-------------~~R~~~~~~~~i~~ 58 (492)
T 2cfo_A 2 VRVRLAPSPTGNLHIGTARTAVFNWLYARH----------RGGKFILRIEDTD-------------RERSRPEYTENILE 58 (492)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHHH----------TTCEEEEEECCCS-------------SSSCCHHHHHHHHH
T ss_pred ceEEeCCCCCCCccHHHHHHHHHHHHHHHh----------cCCeEEEEEeeCC-------------ccccchHHHHHHHH
Confidence 456778999999999999999997777763 3344555455433 12224677889999
Q ss_pred HHhccCCcCCc-cccCCChhHHHHHHHHHHHHHhhcCCEEe
Q psy2399 95 YLDGFYIKFDN-WYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (232)
Q Consensus 95 ~l~~lgI~~d~-~~~t~~~~~~~~v~~~~~~L~~~kG~iy~ 134 (232)
+|++|||+||. .++.| ++.+...+++.+|. ++|++|.
T Consensus 59 dL~wLGl~wde~~~~QS--~r~~~y~~~~~~Li-~~G~AY~ 96 (492)
T 2cfo_A 59 GLQWLGLTWDEGPYFQS--DRLDLYRQAIQTLL-DKGLAYY 96 (492)
T ss_dssp HHHHTTCCCSEEEEEGG--GCHHHHHHHHHHHH-HTTSEEE
T ss_pred HHHHcCCCCCCCCcccc--CCHHHHHHHHHHHH-HCCCceE
Confidence 99999999997 66666 57889999999999 9999996
No 33
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=98.99 E-value=4.9e-10 Score=104.02 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=74.9
Q ss_pred EEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2399 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (232)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~~~~ 94 (232)
+++--+|.|||.|||||+|+.+....+||- ..| .|+.-+||. ++......+.+.|.+
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~--~~G--------~filRieDt-------------D~~R~~~~~~~~I~~ 82 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFARK--EGG--------KFILRIEDT-------------DTERSSREYEQQILE 82 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHHH--HTC--------EEEECBCCC-------------CTTTCCHHHHHHHHH
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHHH--cCC--------EEEEEEeeC-------------CcccccHHHHHHHHH
Confidence 677788999999999999999999999884 344 344444443 334446678888999
Q ss_pred HHhccCCcCCcc---------ccCCChhHHHHHHHHHHHHHhhcCCEEe
Q psy2399 95 YLDGFYIKFDNW---------YSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (232)
Q Consensus 95 ~l~~lgI~~d~~---------~~t~~~~~~~~v~~~~~~L~~~kG~iy~ 134 (232)
+|++|||+||.- ++.| ++.+..++.+.+|. ++|++|.
T Consensus 83 dL~wlGl~wDe~~~~gG~~gp~~QS--er~~~y~~~~~~L~-~~G~aY~ 128 (488)
T 3afh_A 83 SLRWCGLDWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLV-EDKRAYY 128 (488)
T ss_dssp HHHHTTCCCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHH-HTTSEEE
T ss_pred HHHHcCCCCCcCCCCCCCCCCeeee--CCHHHHHHHHHHHH-HcCCeEe
Confidence 999999999984 4555 56788999999999 9999996
No 34
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=98.95 E-value=6.9e-10 Score=103.72 Aligned_cols=95 Identities=13% Similarity=0.089 Sum_probs=72.9
Q ss_pred EEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy2399 14 IFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRK 93 (232)
Q Consensus 14 ~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~~~ 93 (232)
-|.|--+|.|||.|||||||++++...+||- ..| .|+.-+||. ++......+.+.|.
T Consensus 24 ~vrtRFAPsPtG~LHiG~artAl~n~~~Ar~--~~G--------~fiLRieDt-------------D~~R~~~~~~~~I~ 80 (512)
T 4gri_A 24 STRVRYAPSPTGLQHIGGIRTALFNYFFAKS--CGG--------KFLLRIEDT-------------DQSRYSPEAENDLY 80 (512)
T ss_dssp CCEEEECCCSSSCCBHHHHHHHHHHHHHHHH--TTC--------EEEECBCCC-------------CTTSCCHHHHHHHH
T ss_pred ceeEEeCcCCCCcccHHHHHHHHHHHHHHHH--cCC--------EEEEEeCcC-------------CCCcCCHHHHHHHH
Confidence 3667889999999999999999999999973 344 344444442 34444567788889
Q ss_pred HHHhccCCcCCccc---------cCCChhHHHHHHHHHHHHHhhcCCEEe
Q psy2399 94 KYLDGFYIKFDNWY---------STDSIENIDLVQKIYDTLYNKAKLIIN 134 (232)
Q Consensus 94 ~~l~~lgI~~d~~~---------~t~~~~~~~~v~~~~~~L~~~kG~iy~ 134 (232)
++|++|||+||.-. +.| ++.+..++.+.+|. ++|++|.
T Consensus 81 ~~L~wlGl~wDe~p~~~g~~~py~QS--~r~~~Y~~~~~~L~-~~G~aY~ 127 (512)
T 4gri_A 81 SSLKWLGISFDEGPVVGGDYAPYVQS--QRSAIYKQYAKYLI-ESGHAYY 127 (512)
T ss_dssp HHHHHHTCCCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHH-HTTSEEE
T ss_pred HHHHHcCCCCCcCCccCCCCCCcccc--chHHHHHHHHHHHH-HcCCccc
Confidence 99999999999632 223 46677888999999 9999985
No 35
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=98.94 E-value=6.1e-10 Score=102.93 Aligned_cols=94 Identities=20% Similarity=0.269 Sum_probs=74.2
Q ss_pred EEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2399 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (232)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~~~~ 94 (232)
+++--+|.|||.|||||+++.+....+||- ..| .|+.-+||. ++......+.+.|.+
T Consensus 2 v~~RFaPsPtG~LHiG~~rtal~n~l~Ar~--~~G--------~filRieDt-------------D~~R~~~~~~~~I~~ 58 (468)
T 1j09_A 2 VVTRIAPSPTGDPHVGTAYIALFNYAWARR--NGG--------RFIVRIEDT-------------DRARYVPGAEERILA 58 (468)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHHH--TTC--------EEEECBCCC-------------CTTSCCTTHHHHHHH
T ss_pred ceEEeCCCCCCCccHHHHHHHHHHHHHHHH--cCC--------EEEEEeCcC-------------CCcccChHHHHHHHH
Confidence 456778999999999999999999999883 334 354445543 233445677888899
Q ss_pred HHhccCCcCCcc---------ccCCChhHHHHHHHHHHHHHhhcCCEEe
Q psy2399 95 YLDGFYIKFDNW---------YSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (232)
Q Consensus 95 ~l~~lgI~~d~~---------~~t~~~~~~~~v~~~~~~L~~~kG~iy~ 134 (232)
+|++||++||.- ++.| ++.+..++++.+|. ++|++|.
T Consensus 59 dl~wlGl~wd~~~~~gG~~gp~~QS--~r~~~y~~~~~~L~-~~G~aY~ 104 (468)
T 1j09_A 59 ALKWLGLSYDEGPDVGGPHGPYRQS--ERLPLYQKYAEELL-KRGWAYR 104 (468)
T ss_dssp HHHHTTCCCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHH-HHTSEEE
T ss_pred HHHHcCCCCCCCCCCCCCCCCeecc--CCHHHHHHHHHHHH-HcCCeEE
Confidence 999999999975 4555 67888999999999 9999995
No 36
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=98.86 E-value=2.9e-09 Score=98.93 Aligned_cols=94 Identities=12% Similarity=0.128 Sum_probs=75.0
Q ss_pred EEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2399 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (232)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~~~~ 94 (232)
+++--+|.|||.|||||+++.+....+||- ..| . |+.-+||. ++......+.+.|.+
T Consensus 7 vr~RFAPsPTG~LHiG~~rtAL~n~l~Ar~--~gG-----~---fiLRieDt-------------D~~R~~~~~~~~I~~ 63 (498)
T 2ja2_A 7 VRVRFCPSPTGTPHVGLVRTALFNWAYARH--TGG-----T---FVFRIEDT-------------DAQRDSEESYLALLD 63 (498)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHHH--HTC-----E---EEECBCCC-------------CTTTCCHHHHHHHHH
T ss_pred eeEEECcCCCCCccHHHHHHHHHHHHHHHH--cCC-----E---EEEEECcC-------------CCcccChHHHHHHHH
Confidence 567778999999999999999999999983 445 3 33333432 345556678888999
Q ss_pred HHhccCCcCCc---------cccCCChhHHHHHHHHHHHHHhhcCCEEe
Q psy2399 95 YLDGFYIKFDN---------WYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (232)
Q Consensus 95 ~l~~lgI~~d~---------~~~t~~~~~~~~v~~~~~~L~~~kG~iy~ 134 (232)
+|++|||+||. .++.| ++.+..++.+.+|. ++|++|.
T Consensus 64 ~L~wlGl~wDegp~~gG~~~~~~QS--~r~~~y~~~~~~L~-~~g~aY~ 109 (498)
T 2ja2_A 64 ALRWLGLDWDEGPEVGGPYGPYRQS--QRAEIYRDVLARLL-AAGEAYH 109 (498)
T ss_dssp HHHHHTCCCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHH-HTTSEEE
T ss_pred HHHHcCCCcCCCcCcCCCCCCeeee--cCHHHHHHHHHHHH-HcCCeEE
Confidence 99999999997 45555 57888899999999 9999995
No 37
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=96.72 E-value=0.0057 Score=55.08 Aligned_cols=93 Identities=15% Similarity=0.202 Sum_probs=55.7
Q ss_pred CCCcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHH-cCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHH
Q psy2399 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCM-QQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (232)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~-~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~ 88 (232)
.++++.|.++. -|+|.|||||..+.+. .||+.. .| .++.+..+ |.|..-. ..+.+++++. ++
T Consensus 70 ~~~p~~i~sG~-~PTG~lHLGh~v~~~~----~~~lQ~~~g-----~~~~i~Ia-D~ha~~~-----~~~~~~e~i~-~~ 132 (392)
T 3jxe_A 70 EGRGFFLYTGR-GPSGPMHIGHIIPFFA----TKWLQEKFG-----VNLYIQIT-DDEKFLF-----KENLTFDDTK-RW 132 (392)
T ss_dssp TTCCCEEEEEE-CCSSCCBHHHHHHHHH----HHHHHHHHC-----CEEEEEEC-HHHHHHH-----CSSCCHHHHH-HH
T ss_pred cCCCeEEEecc-CCCCchhHHHHHHHHH----HHHHHHhcC-----CceEEEec-chHHhhc-----CCCCCHHHHH-HH
Confidence 34566666655 5679999999886642 233443 68 88888776 5554321 1135665554 44
Q ss_pred HHHHHHHHhccCCcCCc--cccCC-ChhHHHHHH
Q psy2399 89 SSNRKKYLDGFYIKFDN--WYSTD-SIENIDLVQ 119 (232)
Q Consensus 89 ~~~~~~~l~~lgI~~d~--~~~t~-~~~~~~~v~ 119 (232)
.....+++.++|++++. ++.-| -+.|.+.++
T Consensus 133 ~~~~~~~~lA~GlDp~kt~i~~qS~~~~~~~~~~ 166 (392)
T 3jxe_A 133 AYDNILDIIAVGFDPDKTFIFQNSEFTKIYEMAI 166 (392)
T ss_dssp HHHHHHHHHTTCCCTTSEEEEETTTSTHHHHHHH
T ss_pred HHHHHHHHHHhCcCccceEEEECchhHHHHHHHH
Confidence 44666778889998874 33333 244554444
No 38
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=96.34 E-value=0.0062 Score=53.28 Aligned_cols=76 Identities=21% Similarity=0.256 Sum_probs=46.6
Q ss_pred CcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2399 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (232)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~ 91 (232)
++..|.++. -|||+|||||+.. +. .+.++ +..| +++.+..| |.|+.-. . ..++++ +.++...
T Consensus 31 ~~~~vy~G~-~PTg~lHlG~l~~-l~--~~~~l-q~~g-----~~~~~~i~-D~~a~~~----d--~~~~~~-i~~~~~~ 92 (323)
T 2cyb_A 31 EKPRAYVGY-EPSGEIHLGHMMT-VQ--KLMDL-QEAG-----FEIIVLLA-DIHAYLN----E--KGTFEE-IAEVADY 92 (323)
T ss_dssp SCCEEEEEE-CCCSCCBHHHHHH-HH--HHHHH-HHTT-----CEEEEEEC-HHHHHHT----T--CCCHHH-HHHHHHH
T ss_pred CCCEEEECc-CCCCcchHHHHHH-HH--HHHHH-HHCC-----CcEEEEEC-CceeEcC----C--CCCHHH-HHHHHHH
Confidence 344555554 6789999999633 22 33344 4458 78766653 3333221 1 125554 5667788
Q ss_pred HHHHHhccCCcCCc
Q psy2399 92 RKKYLDGFYIKFDN 105 (232)
Q Consensus 92 ~~~~l~~lgI~~d~ 105 (232)
+.+++.++|++++.
T Consensus 93 ~~~~~~a~Gldp~k 106 (323)
T 2cyb_A 93 NKKVFIALGLDESR 106 (323)
T ss_dssp HHHHHHHTTCCTTT
T ss_pred HHHHHHHhCCCccc
Confidence 88899999999875
No 39
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=96.29 E-value=0.0051 Score=55.01 Aligned_cols=80 Identities=15% Similarity=0.179 Sum_probs=51.7
Q ss_pred CCCCcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHH
Q psy2399 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (232)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~ 88 (232)
..+++++|.++. -|+|.|||||..+.+ -.+++...| +++.+.. .|.|-.-. ......+.....
T Consensus 66 e~gk~~~v~sG~-~PTG~lHLGhyv~~~----~~~~lq~~~-----~~~~~~I-aD~ha~t~------~~~~~~e~~r~~ 128 (372)
T 3a04_A 66 ARGERVAVLTGF-MPSGKFHFGHKLTVD----QLIYLQKNG-----FKVFVAI-ADAEAFAV------RRIGREEAVRIA 128 (372)
T ss_dssp HTTCCCEEEEEE-CCCSCCBHHHHHHHH----HHHHHHHTT-----CEEEEEE-CHHHHHHT------TCCCHHHHHHHH
T ss_pred HcCCCCEEEeCc-CCCcHhHHHHHHHHH----HHHHHHhCC-----CeEEEEE-ecchhhcc------CCCCCHHHHHHH
Confidence 345777887776 788999999977442 234455568 8887654 45554321 123344555566
Q ss_pred HHHHHHHHhccCCcCCc
Q psy2399 89 SSNRKKYLDGFYIKFDN 105 (232)
Q Consensus 89 ~~~~~~~l~~lgI~~d~ 105 (232)
......++-++|++++.
T Consensus 129 ~~~~~~~~lA~GlDP~k 145 (372)
T 3a04_A 129 VEEYIANMIALGLDPKD 145 (372)
T ss_dssp HHTTHHHHHHHTCCTTT
T ss_pred HHHHHHHHHHcCCChHH
Confidence 66667777889998764
No 40
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=96.13 E-value=0.013 Score=52.61 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=47.2
Q ss_pred CCCcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHH
Q psy2399 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (232)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~ 89 (232)
+++++.|.++. -|+|+|||||..+. ..+.++++.-| ..+.++.+ |.+ +......+++++.+...
T Consensus 79 ~~~~~~vysG~-~PTG~lHLGh~v~~---~~~~~lQ~~~g-----~~v~i~I~-D~~------a~~~r~~~~e~i~~~~~ 142 (386)
T 3hzr_A 79 AKKPTFIFIQK-YPQKEVALEEYITL---EFARYLQDAFN-----IQVIIQIL-DDI------KVLNREATINEASKMSN 142 (386)
T ss_dssp TTCCEEEEEEE-CCCSSCBGGGHHHH---HHHHHHHHHHC-----CEEEEEEC-HHH------HHHTTSCCHHHHHHHHH
T ss_pred cCCCeEEEecc-CCCCCccHHHHHHH---HHHHHHHHhcC-----CeEEEEeC-chH------HhhcCCCCHHHHHHHHH
Confidence 34667777765 78899999996654 33433444457 77777633 221 11111256666554444
Q ss_pred HHHHHHHhccCCcCCc
Q psy2399 90 SNRKKYLDGFYIKFDN 105 (232)
Q Consensus 90 ~~~~~~l~~lgI~~d~ 105 (232)
.+.+++-++|++.+.
T Consensus 143 -~~~~~~lA~GlDp~k 157 (386)
T 3hzr_A 143 -DLMKYILAFGFNEDK 157 (386)
T ss_dssp -HHHHHHHHTCCCGGG
T ss_pred -HHHHHHHHcCCCCcc
Confidence 555677788888764
No 41
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=95.95 E-value=0.02 Score=50.53 Aligned_cols=73 Identities=12% Similarity=0.144 Sum_probs=44.7
Q ss_pred EEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy2399 14 IFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRK 93 (232)
Q Consensus 14 ~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~~~ 93 (232)
.+.+... |||.|||||..+.+. -.+.+...| +++.++. .|.|+.-.. ..+|+++ .+......
T Consensus 14 ~v~~G~~--PTG~lHLGn~~g~l~---~~~~lQ~~G-----~~~~~~I-aD~ha~t~~------~~dp~~~-~~~~~~~~ 75 (340)
T 2g36_A 14 RILSGMR--PTGKLHIGHLVGALE---NWVKLQEEG-----NECFYFV-ADWHALTTH------YDDVSKL-KEYTRDLV 75 (340)
T ss_dssp EEEEEEC--CCSSCBHHHHHTHHH---HHHHHHHTT-----CEEEEEE-CHHHHHHHH------TTCCTTH-HHHHHHHH
T ss_pred eEEEeeC--CCCcccHHhHHHHHH---HHHHHHHCC-----CCEEEEE-ecceeecCC------CCCHHHH-HHHHHHHH
Confidence 3444444 568999999998653 223344578 8888776 445544321 2345543 33444555
Q ss_pred HHHhccCCcCC
Q psy2399 94 KYLDGFYIKFD 104 (232)
Q Consensus 94 ~~l~~lgI~~d 104 (232)
+++.++|++++
T Consensus 76 ~~~lA~Gldp~ 86 (340)
T 2g36_A 76 RGFLACGIDPE 86 (340)
T ss_dssp HHHHHTTCCTT
T ss_pred HHHHHhCCChh
Confidence 67778999887
No 42
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.0093 Score=53.67 Aligned_cols=78 Identities=17% Similarity=0.151 Sum_probs=45.1
Q ss_pred CCcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHH----HH
Q psy2399 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEF----IN 86 (232)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~----~~ 86 (232)
++++.|.++. -|||.|||||+++.+. +.++++ .| +++.+..+ |.|+.-.. .. .+.+. +.
T Consensus 37 ~~p~~vy~G~-~PTG~LHlG~~~~al~---~~~~~q-~g-----~~~ii~I~-D~ha~t~~-----~~-~~~e~~~~~~~ 99 (394)
T 2dlc_X 37 KRHLKLYWGT-APTGRPHCGYFVPMTK---LADFLK-AG-----CEVTVLLA-DLHAFLDN-----MK-APLEVVNYRAK 99 (394)
T ss_dssp CSCCEEEEEE-CCCSCCBGGGHHHHHH---HHHHHH-TT-----CEEEEEEC-HHHHHHTT-----TS-SCTTHHHHHHH
T ss_pred CCCeEEEEEe-CCCCCccHHHHHHHHH---HHHHHH-cC-----CcEEEEEc-CCccccCC-----CC-CcHHHHHHHHH
Confidence 3554444443 5589999999877655 333444 67 77766653 33332210 00 12222 33
Q ss_pred HHHHHHHHHHhccCCcCCc
Q psy2399 87 NISSNRKKYLDGFYIKFDN 105 (232)
Q Consensus 87 ~~~~~~~~~l~~lgI~~d~ 105 (232)
.+...+.+.|.++|++++.
T Consensus 100 ~~~~~i~~~l~a~Gldp~k 118 (394)
T 2dlc_X 100 YYELTIKAILRSINVPIEK 118 (394)
T ss_dssp HHHHHHHHHHHHTTCCCTT
T ss_pred HHHHHHHHHHHHcCCChhH
Confidence 4556677788999999886
No 43
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=95.87 E-value=0.017 Score=50.33 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=47.1
Q ss_pred CcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2399 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (232)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~ 91 (232)
+++.|.++. -|+|.||||| ...+ -.+.++ ...| +++.+..| |.|+.-. . ..++++ +.++...
T Consensus 27 ~~~~vy~G~-~PTg~lHlGh-l~~l--~~~~~l-Q~~g-----~~~~~~i~-D~~a~~~----~--~~~~e~-i~~~~~~ 88 (314)
T 2zp1_A 27 DEKSAYIGF-EPSGKIHLGH-YLQI--KKMIDL-QNAG-----FDIIILLA-DLAAYLN----Q--KGELDE-IRKIGDY 88 (314)
T ss_dssp SSEEEEEEE-CCCSSCBHHH-HHHH--HHHHHH-HHTT-----EEEEEEEC-HHHHHHT----T--CCCHHH-HHHHHHH
T ss_pred CCCEEEEcc-CCCCCcchhh-HHHH--HHHHHH-HHCC-----CCEEEEEe-cceEecC----C--CCCHHH-HHHHHHH
Confidence 445554443 5679999999 4332 233344 4468 88877664 3333221 1 124444 4555588
Q ss_pred HHHHHhccCCcCCccccCC
Q psy2399 92 RKKYLDGFYIKFDNWYSTD 110 (232)
Q Consensus 92 ~~~~l~~lgI~~d~~~~t~ 110 (232)
+.+++.++|++ ..|+.-+
T Consensus 89 ~~~~~~a~G~d-~~~~~qs 106 (314)
T 2zp1_A 89 NKKVFEAMGLK-AKYVYGS 106 (314)
T ss_dssp HHHHHHHTTCC-CEEEEGG
T ss_pred HHHHHHhcCCC-eEEEECC
Confidence 88999999998 5565444
No 44
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=95.87 E-value=0.0081 Score=52.64 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=42.3
Q ss_pred CCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCC
Q psy2399 22 YANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYI 101 (232)
Q Consensus 22 ~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~lgI 101 (232)
-|+|.|||||..+.+.. +.++++ | +++.+..+ |.|+.-. ..+++++ .++...+..++.++|+
T Consensus 11 ~PTg~lHlG~~lg~l~~--~~~lQ~--g-----~~~~~~ia-D~ha~~~-------~~~~~~l-~~~~~~~~~~~lA~Gl 72 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQ--MVDAQE--K-----SQMFMFIA-NYHAMTS-------SQDGEKL-KQNSLKAAAAFLSLGI 72 (322)
T ss_dssp CCSSCCBHHHHHHTHHH--HHHTTT--T-----SCCEEEEC-HHHHTTT-------CCCHHHH-HHHHHHHHHHHHHTTC
T ss_pred CCCccccHHHHHHHHHH--HHHHhc--C-----CCEEEEEe-cCeeecC-------CCCHHHH-HHHHHHHHHHHHHcCC
Confidence 57799999999875543 444444 8 88877665 5554321 1245554 4445566677778999
Q ss_pred cCCc
Q psy2399 102 KFDN 105 (232)
Q Consensus 102 ~~d~ 105 (232)
+++.
T Consensus 73 dp~k 76 (322)
T 3tzl_A 73 DPQK 76 (322)
T ss_dssp CTTT
T ss_pred Cccc
Confidence 8763
No 45
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=95.77 E-value=0.011 Score=53.03 Aligned_cols=88 Identities=14% Similarity=0.224 Sum_probs=51.3
Q ss_pred CcEE----EEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHH
Q psy2399 12 RRIF----VTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINN 87 (232)
Q Consensus 12 ~~~~----v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~ 87 (232)
++++ |.++. -|+|.|||||..+.+.. +.+++ .| +++.+.. .|.|..-. ..+++++.+.
T Consensus 30 ~p~~m~~ri~sG~-~PTG~lHLGhyvGal~~--~~~LQ--~~-----~~~~~~I-aD~hAlt~-------~~~~~~lr~~ 91 (388)
T 3prh_A 30 DPFTMKQTIFSGI-QPSGSVTLGNYIGAMKQ--FVELQ--HD-----YNSYFCI-VDQHAITV-------PQDRLELRKN 91 (388)
T ss_dssp -----CCEEEEEE-CCCSCCBHHHHHHTHHH--HHHTT--TT-----SEEEEEE-CHHHHTTS-------CCCHHHHHHH
T ss_pred CCcccCCeEEEee-CCCCcchHHHHHHHHHH--HHHHH--cc-----CcEEEEE-ecceeeec-------CCCHHHHHHH
Confidence 5666 66665 78899999998876542 12222 37 8887665 35555331 3466665444
Q ss_pred HHHHHHHHHhccCCcCCc--cccCC-ChhHHHHH
Q psy2399 88 ISSNRKKYLDGFYIKFDN--WYSTD-SIENIDLV 118 (232)
Q Consensus 88 ~~~~~~~~l~~lgI~~d~--~~~t~-~~~~~~~v 118 (232)
. .....++.++|++++. ++.-| -++|.+..
T Consensus 92 ~-~~~aa~~lA~GlDp~kt~if~qS~v~~~~el~ 124 (388)
T 3prh_A 92 I-RNLAALYLAVGLDPEKATLFIQSEVPAHAQAG 124 (388)
T ss_dssp H-HHHHHHHHHTTCCTTTEEEEEGGGSTHHHHHH
T ss_pred H-HHHHHHHHHhCCChhHeEEEecccccchHHHH
Confidence 4 4666778889999875 33333 34554443
No 46
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=95.76 E-value=0.021 Score=50.87 Aligned_cols=77 Identities=13% Similarity=0.058 Sum_probs=45.7
Q ss_pred cEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2399 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92 (232)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~~ 92 (232)
+..|.++. -|+|.||||| ... .-.+.+++ ..| +++.+..| |.|+.-. .+.|.+++++. ++...+
T Consensus 35 ~~~iy~G~-~PTg~lHlG~-l~~--l~~~~~lQ-~~G-----~~~~~~ia-D~~a~~~----~ps~~~~e~i~-~~~~~~ 98 (364)
T 2cya_A 35 RIKGYIGY-EPSGVAHIGW-LVW--MYKVKDLV-EAG-----VDFSVLEA-TWHAYIN----DKLGGDMDLIR-AAARIV 98 (364)
T ss_dssp CCEEEEEE-CCCSSCBTHH-HHH--HHHHHHHH-HTT-----CEEEEEEC-HHHHHHT----TGGGGCHHHHH-HHHHHH
T ss_pred CCEEEecc-CCCCCccHhH-HHH--HHHHHHHH-HCC-----CCEEEEEe-CcchhhC----CCCCCCHHHHH-HHHHHH
Confidence 34444443 5679999999 432 23334443 458 88877765 4444321 11234555544 444677
Q ss_pred HHHHhccCCcCCc
Q psy2399 93 KKYLDGFYIKFDN 105 (232)
Q Consensus 93 ~~~l~~lgI~~d~ 105 (232)
.+++.++|++++.
T Consensus 99 ~~~~la~G~dp~k 111 (364)
T 2cya_A 99 RRVMEAAGVPVER 111 (364)
T ss_dssp HHHHHHTTCCGGG
T ss_pred HHHHHHhCCCccc
Confidence 7889999998875
No 47
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=95.73 E-value=0.011 Score=51.87 Aligned_cols=65 Identities=17% Similarity=0.253 Sum_probs=41.6
Q ss_pred CCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCC
Q psy2399 22 YANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYI 101 (232)
Q Consensus 22 ~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~lgI 101 (232)
-|||.|||||..+.+..-+ +++ .| +++.+..| |.|+.-. ..+++++ .++...+.+++.++|+
T Consensus 9 ~PTG~lHlGn~vg~l~~~~--~lQ--~g-----~~~~~~Ia-D~ha~~~-------~~~~e~i-~~~~~~~~~~~la~Gl 70 (328)
T 1i6k_A 9 QPSGVITIGNYIGALRQFV--ELQ--HE-----YNCYFCIV-DQHAITV-------WQDPHEL-RQNIRRLAALYLAVGI 70 (328)
T ss_dssp CCCSCCBHHHHHHTHHHHH--HHT--TT-----SEEEEEEC-HHHHTTS-------CCCHHHH-HHHHHHHHHHHHHTTC
T ss_pred CCCCcccHHHHHHHHHHHH--HHH--cC-----CcEEEEEe-CceeecC-------CCCHHHH-HHHHHHHHHHHHHhCC
Confidence 4669999999987763222 332 28 88866654 4444321 1456544 4455577788899999
Q ss_pred cCC
Q psy2399 102 KFD 104 (232)
Q Consensus 102 ~~d 104 (232)
+++
T Consensus 71 dp~ 73 (328)
T 1i6k_A 71 DPT 73 (328)
T ss_dssp CTT
T ss_pred Chh
Confidence 987
No 48
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=95.58 E-value=0.023 Score=50.64 Aligned_cols=74 Identities=16% Similarity=0.132 Sum_probs=42.7
Q ss_pred EEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHH---HHHHHHH
Q psy2399 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEF---INNISSN 91 (232)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~---~~~~~~~ 91 (232)
.|.++. -|||.|||||+.+.+. +.++++ .| +++.+..| |.|+.-.. -.++.++ ...+.+.
T Consensus 37 ~vy~G~-~PTG~lHlG~~~~~l~---~~~~~q-~g-----~~~i~~I~-D~ha~t~~------~~~~~~l~~~~~~~~~~ 99 (372)
T 1n3l_A 37 KIYWGT-ATTGKPHVAYFVPMSK---IADFLK-AG-----CEVTILFA-DLHAYLDN------MKAPWELLELRVSYYEN 99 (372)
T ss_dssp EEEEEE-CCSSCCBGGGHHHHHH---HHHHHH-TT-----CEEEEEEC-HHHHHHTT------TTSCHHHHHHHHHHHHH
T ss_pred EEEeCc-CCCCcccHHHHHHHHH---HHHHHH-CC-----CCEEEEEc-CCceeeCC------CCCHHHHHHHHHHHHHH
Confidence 444443 3779999999877655 444444 68 78776654 22322210 0134443 3444444
Q ss_pred -HHHHHhccCCcCCc
Q psy2399 92 -RKKYLDGFYIKFDN 105 (232)
Q Consensus 92 -~~~~l~~lgI~~d~ 105 (232)
+...|.++|++++.
T Consensus 100 ~i~~~lla~Gldp~k 114 (372)
T 1n3l_A 100 VIKAMLESIGVPLEK 114 (372)
T ss_dssp HHHHHHHHHTCCCTT
T ss_pred HHHHHHHHcCCChhh
Confidence 66667899998874
No 49
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=95.41 E-value=0.055 Score=48.84 Aligned_cols=79 Identities=13% Similarity=0.116 Sum_probs=48.2
Q ss_pred CCCcEEEEcCCCCCCC-cCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHH
Q psy2399 10 DVRRIFVTTALPYANG-ELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (232)
Q Consensus 10 ~~~~~~v~~~~P~~nG-~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~ 88 (232)
+++++.|.++. -|+| .|||||..+. ..+.++++.-| ..+.+..| |.|.... ...+++++. ++
T Consensus 98 ~~~p~~vy~G~-~PTg~~lHLGh~v~~---~~~~~lQ~~~g-----~~~~i~Ia-D~~a~l~------~~~~~e~i~-~~ 160 (406)
T 3tze_A 98 NNRPFYLYTGR-GPSSKTMHIGHTIPF---LLCKYMQDAFK-----IRLVIQIT-DDEKFLW------KSMRLEDAM-AY 160 (406)
T ss_dssp TTCCEEEEEEE-CCCSSCCBGGGHHHH---HHHHHHHHHHT-----CCEEEEEC-HHHHHHH------SSCCHHHHH-HH
T ss_pred cCCCeEEEEee-CCCCCcccHHHHHHH---HHHHHHHHhcC-----CcEEEEee-ChHHHcC------CCCCHHHHH-HH
Confidence 35677777765 7888 7999996654 33333444447 67766543 4442111 135666554 44
Q ss_pred HHHHHHHHhccCCcCCc
Q psy2399 89 SSNRKKYLDGFYIKFDN 105 (232)
Q Consensus 89 ~~~~~~~l~~lgI~~d~ 105 (232)
...+.+++-++|++.+.
T Consensus 161 ~~~~~~~~lA~GlDp~k 177 (406)
T 3tze_A 161 GRENIKDIVTLGFDPKL 177 (406)
T ss_dssp HHHHHHHHHTTTCCGGG
T ss_pred HHHHHHHHHHcCCCccc
Confidence 45666777789998764
No 50
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=95.35 E-value=0.047 Score=49.07 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=47.1
Q ss_pred CCcEEEEcCCCCCC-CcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHH-cCCCHHHHHHHH
Q psy2399 11 VRRIFVTTALPYAN-GELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK-AGMTPKEFINNI 88 (232)
Q Consensus 11 ~~~~~v~~~~P~~n-G~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~-~g~~~~e~~~~~ 88 (232)
++++.|.++. -|+ |.|||||..+.+ .+.++++.-| ..|.+..| |.| +... ...+++++ .++
T Consensus 72 g~~~~vy~G~-~PTa~~lHlGh~v~~~---~~~~lQ~~~~-----~~v~i~I~-D~~------~~~~r~~~~~e~i-~~~ 134 (393)
T 3hv0_A 72 GELFYLYTGR-GPSSESLHVGHLVPFL---FTKYLQDTFK-----VPLVIQLT-DDE------KFIFKSNLTLEET-HNY 134 (393)
T ss_dssp TCCCEEEEEE-CCSSSSCBSTTHHHHH---HHHHHHHHHC-----CCEEEEEC-HHH------HHHHCTTCCHHHH-HHH
T ss_pred CCCeEEEeCC-CCCCCCccHHHHHHHH---HHHHHHHhcC-----CCeEeecc-ChH------HHhhccCCCHHHH-HHH
Confidence 4456666665 677 689999965544 4444555557 67666543 221 2122 25666555 444
Q ss_pred HHHHHHHHhccCCcCCc
Q psy2399 89 SSNRKKYLDGFYIKFDN 105 (232)
Q Consensus 89 ~~~~~~~l~~lgI~~d~ 105 (232)
...+.+++.++|++.+.
T Consensus 135 ~~~~~~~~lA~GlDp~k 151 (393)
T 3hv0_A 135 AYENMKDIIACGFDPEL 151 (393)
T ss_dssp HHHHHHHHHTTCCCTTT
T ss_pred HHHHHHHHHHcCCCCcc
Confidence 44666778889998764
No 51
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=95.31 E-value=0.039 Score=50.20 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=48.4
Q ss_pred CCcEEEEcCCCCCC-CcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHH
Q psy2399 11 VRRIFVTTALPYAN-GELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (232)
Q Consensus 11 ~~~~~v~~~~P~~n-G~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~ 89 (232)
++++.|.++. -|+ |.|||||..+.+. +.+++...| .++.++.| |.++.-- ...++++.+ .++.
T Consensus 100 g~~~~vy~G~-dPTag~LHLGh~v~~~~---l~~lQ~~~g-----~~~i~lI~-D~ta~l~-----~~~~t~e~i-~~~~ 163 (432)
T 2ip1_A 100 GKPFFLYTGR-GPSSDSMHLGHMIPFVF---TKWLQEVFD-----VPLVIELT-DDEKFLF-----KHKLTINDV-KNFA 163 (432)
T ss_dssp TCCCEEEEEE-CCCSSCCBGGGHHHHHH---HHHHHHHHT-----CCEEEEEC-HHHHHHH-----CTTCCHHHH-HHHH
T ss_pred CCCeEEEEee-cCCCCCccHHHHHHHHH---HHHHHHHcC-----CeEEEEEe-cccceeC-----CCCCCHHHH-HHHH
Confidence 3456666665 677 8999999886542 334444478 88887776 4333220 112565554 4444
Q ss_pred HHHHHHHhccCCcCCc
Q psy2399 90 SNRKKYLDGFYIKFDN 105 (232)
Q Consensus 90 ~~~~~~l~~lgI~~d~ 105 (232)
..+.+++.++|++.+.
T Consensus 164 ~~~~~~~lA~GlDp~k 179 (432)
T 2ip1_A 164 RENAKDIIAVGFDPKN 179 (432)
T ss_dssp HHHHHHHHTTTCCGGG
T ss_pred HHHHHHHHHhCCCCCc
Confidence 4556677788998763
No 52
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=95.23 E-value=0.047 Score=48.22 Aligned_cols=79 Identities=15% Similarity=0.091 Sum_probs=45.9
Q ss_pred CcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2399 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (232)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~ 91 (232)
++..|.++. -|+|.|||||.. +..-.+.+++ ..| +++.+..| |.|+.-. .+.|.++++ +.++...
T Consensus 39 ~~~~vy~G~-~PTg~lHlGhyl--~~l~~~~~lQ-~~G-----~~~~~~i~-D~~a~~~----~~~~~~~e~-i~~~~~~ 103 (348)
T 2j5b_A 39 RIFTAYNGF-EPSGRIHIAQAL--ITVMNTNNMI-ECG-----GQMIIYIA-DWFAKMN----LKMNGDINK-IRELGRY 103 (348)
T ss_dssp CCEEEEEEE-CCCSSCBHHHHH--HHHHHHHHHH-HTT-----EEEEEEEC-HHHHHHT----TGGGGCHHH-HHHHHHH
T ss_pred CCCEEEecc-CCCCCCchhHHH--HHHHHHHHHH-HcC-----CcEEEEec-cchhhhC----CCCCCCHHH-HHHHHHH
Confidence 344554444 566999999932 2223344444 458 88877664 3343221 122345544 4555567
Q ss_pred HHHHHhccCCcCCc
Q psy2399 92 RKKYLDGFYIKFDN 105 (232)
Q Consensus 92 ~~~~l~~lgI~~d~ 105 (232)
+.+++.++|++.+.
T Consensus 104 ~~~~~la~Gldp~k 117 (348)
T 2j5b_A 104 FIEVFKACGINLDG 117 (348)
T ss_dssp HHHHHHHTTCCGGG
T ss_pred HHHHHHHhcCCccc
Confidence 77788899998764
No 53
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=95.13 E-value=0.042 Score=50.60 Aligned_cols=78 Identities=12% Similarity=0.134 Sum_probs=48.5
Q ss_pred CCcEEEEcCCCCCC-CcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHH
Q psy2399 11 VRRIFVTTALPYAN-GELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (232)
Q Consensus 11 ~~~~~v~~~~P~~n-G~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~ 89 (232)
++++.|.++. -|+ |.|||||..+.+. +.+++...| .++.++.|- .++.-- + .++++++. ++.
T Consensus 153 ~~~~~vy~G~-dPTag~LHLGh~v~~~~---~~~lQ~~~g-----~~~iilI~D-~~a~ig----d--~lt~e~i~-~n~ 215 (477)
T 1r6t_A 153 KKPFYLYTGR-GPSSEAMHVGHLIPFIF---TKWLQDVFN-----VPLVIQMTD-DEKYLW----K--DLTLDQAY-GDA 215 (477)
T ss_dssp TCCEEEEEEE-CCCTTCCBGGGHHHHHH---HHHHHHHHT-----CCEEEEECH-HHHHHH----S--SCCHHHHH-HHH
T ss_pred CCCcEEEEcc-cCCCCCccHHHHHHHHH---HHHHHHHhC-----CcEEEEEec-ceeeec----C--CCCHHHHH-HHH
Confidence 4567777765 677 8999999887652 333444478 887776653 232221 1 46666544 444
Q ss_pred HHHHHHHhccCCcCCc
Q psy2399 90 SNRKKYLDGFYIKFDN 105 (232)
Q Consensus 90 ~~~~~~l~~lgI~~d~ 105 (232)
..+..++.++|++++.
T Consensus 216 ~~~~~~~lA~GlDp~k 231 (477)
T 1r6t_A 216 VENAKDIIACGFDINK 231 (477)
T ss_dssp HHHHHHHHTTCCCTTS
T ss_pred HHHHHHHHHhCCCCCc
Confidence 4456667788988763
No 54
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=95.10 E-value=0.078 Score=48.46 Aligned_cols=80 Identities=18% Similarity=0.184 Sum_probs=48.2
Q ss_pred CCCcEEEEcCCCCCC-CcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHH
Q psy2399 10 DVRRIFVTTALPYAN-GELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (232)
Q Consensus 10 ~~~~~~v~~~~P~~n-G~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~ 88 (232)
+++++.|.++. -|| |.|||||..+.+ .+.+++..-| ..+.+..| |.+ . ...+...+++++. ++
T Consensus 88 ~g~p~~vytG~-dPTagsLHLGH~v~~~---~l~~lQ~~~g-----~~v~I~Ig-D~~-a----~~~r~~lt~E~I~-~n 151 (451)
T 3foc_A 88 KGHPIYIYTGR-GPSSGALHLGHLLPFI---FTKYLQDAFK-----CYVVIQIT-DDE-K----FLRNRSLSYAEVD-SY 151 (451)
T ss_dssp TTCCEEEEEEE-CCCSSCCBHHHHHHHH---HHHHHHHHHT-----CEEEEEEC-HHH-H----HHHCTTCCHHHHH-HH
T ss_pred cCCCeEEEecC-CCCCCCccHHHHHHHH---HHHHHHHccC-----ceEEEEee-CcH-H----hhcccCCCHHHHH-HH
Confidence 34677777776 788 899999966543 3344445447 77777543 221 1 1122245666554 44
Q ss_pred HHHHHHHHhccCCcCCc
Q psy2399 89 SSNRKKYLDGFYIKFDN 105 (232)
Q Consensus 89 ~~~~~~~l~~lgI~~d~ 105 (232)
...+.+++-++|++.+.
T Consensus 152 ~~~~~~~~lA~GlDpek 168 (451)
T 3foc_A 152 TRENIKDIIACGFDPDK 168 (451)
T ss_dssp HHHHHHHHHTTTCCGGG
T ss_pred HHHHHHHHHHcCCCCCc
Confidence 44666777888987653
No 55
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=95.09 E-value=0.064 Score=47.43 Aligned_cols=73 Identities=16% Similarity=0.113 Sum_probs=43.4
Q ss_pred cEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHc-CCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2399 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQ-QDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (232)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~-G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~ 91 (232)
+..|.++. -|+|.|||||..+.+. .|.+++ . +++.+.. .|.|+.-.. ..+++++. ++...
T Consensus 22 ~~~vysG~-~PTG~lHLGn~~g~l~-----~~~~lQ~~-----~~~~~~I-aD~ha~~~~------~~~~e~i~-~~~~~ 82 (351)
T 1yi8_B 22 RPRVLTGD-RPTGALHLGHLAGSLQ-----NRVRLQDE-----AELFVLL-ADVQALTDH------FDRPEQVR-ENVLA 82 (351)
T ss_dssp CSEEEEEE-CCSSCCBHHHHHHTHH-----HHHHHTSS-----SEEEEEE-CHHHHHHHH------TTCHHHHH-HHHHH
T ss_pred CcEEEEee-CCCCCccHHHHHHHHH-----HHHHHHHh-----CCeEEEE-ecchhhcCC------CCCHHHHH-HHHHH
Confidence 33444433 5679999999987642 333333 3 4665444 455554422 35666554 44445
Q ss_pred HHHHHhccCCcCC
Q psy2399 92 RKKYLDGFYIKFD 104 (232)
Q Consensus 92 ~~~~l~~lgI~~d 104 (232)
+.+++.++|++++
T Consensus 83 ~~~~~la~Gldp~ 95 (351)
T 1yi8_B 83 VALDYLAAGLDPQ 95 (351)
T ss_dssp HHHHHHHHTCCTT
T ss_pred HHHHHHHhCCChh
Confidence 6677888999887
No 56
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=95.00 E-value=0.021 Score=50.51 Aligned_cols=77 Identities=18% Similarity=0.286 Sum_probs=45.4
Q ss_pred CCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCC
Q psy2399 22 YANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYI 101 (232)
Q Consensus 22 ~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~lgI 101 (232)
-|+|.|||||..+.+..- .+++. | +++.+..+ |.|+.-. ..+|+++.+ +...+.+++.++|+
T Consensus 12 ~PTG~lHLGn~vg~l~~~--~~lQ~--~-----~~~~~~Ia-D~ha~~~-------~~d~~~i~~-~~~~~~~~~lA~Gl 73 (348)
T 2yy5_A 12 QASGKQHLGNYLGVMQSL--IELQE--Q-----CQLFVFVA-DLHSITV-------DFQPQALKQ-NNFDLVRTLLAVGL 73 (348)
T ss_dssp CCCTTCBHHHHHHTGGGH--HHHHH--H-----SEEEEEEC-HHHHTTS-------CCCHHHHHH-HHHHHHHHHHHTTC
T ss_pred CCCCcccHHHHHHHHHHH--HHHHh--C-----CcEEEEEc-ChhhccC-------CCCHHHHHH-HHHHHHHHHHHhCC
Confidence 466999999998766322 23333 7 77765543 3343321 146665544 45566677888999
Q ss_pred cCCc--cccCC-ChhHHH
Q psy2399 102 KFDN--WYSTD-SIENID 116 (232)
Q Consensus 102 ~~d~--~~~t~-~~~~~~ 116 (232)
+++. ++.-| -+.|.+
T Consensus 74 dp~k~~if~qS~~~~~~e 91 (348)
T 2yy5_A 74 DPQKACLFLQSDLLEHSM 91 (348)
T ss_dssp CTTTEEEEEGGGCHHHHH
T ss_pred ChhHeEEEECCcccchhH
Confidence 9873 33333 344443
No 57
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=94.91 E-value=0.059 Score=48.10 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=44.3
Q ss_pred EEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy2399 14 IFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRK 93 (232)
Q Consensus 14 ~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~~~ 93 (232)
..|.++. -|+|.|||||. .+..-.+.++ ...| +++.+..| |.|+.-. .+.|.+++++ .++...+.
T Consensus 57 ~~iy~G~-~PTg~lHlG~g--vl~~~~~~~l-Q~~G-----~~~~~lIa-D~ha~i~----d~~~~~~~~i-~~~~~~~~ 121 (373)
T 3vgj_A 57 LICYDGF-EPSGRMHIAQG--LLKSIIVNKL-TSNG-----CTFIFWIA-DWFAHLN----NKMSGDLKKI-KKVGSYFI 121 (373)
T ss_dssp CEEEEEE-CCCSSCBHHHH--HHHHHHHHHH-HTTT-----CEEEEEEC-HHHHHHT----TGGGGCHHHH-HHHHHHHH
T ss_pred ceEEeCC-CCCCCceehhh--HHHHHHHHHH-HHCC-----CcEEEEEe-cceeEec----CCCCCCHHHH-HHHHHHHH
Confidence 3444443 56689999992 2222224444 4468 88887775 5454321 1233445443 44445566
Q ss_pred HHHhccCCcCCc
Q psy2399 94 KYLDGFYIKFDN 105 (232)
Q Consensus 94 ~~l~~lgI~~d~ 105 (232)
+.+.++|++++.
T Consensus 122 ~~~~a~G~dp~k 133 (373)
T 3vgj_A 122 EVWKSCGMNMEN 133 (373)
T ss_dssp HHHHHTTCCSTT
T ss_pred HHHHHcCCChhh
Confidence 788889998764
No 58
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=94.85 E-value=0.054 Score=48.70 Aligned_cols=79 Identities=10% Similarity=0.107 Sum_probs=48.6
Q ss_pred CCCcEEEEcCCCCCCC-cCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHH
Q psy2399 10 DVRRIFVTTALPYANG-ELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (232)
Q Consensus 10 ~~~~~~v~~~~P~~nG-~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~ 88 (232)
+++++.|.++. -|+| .|||||..+. ..+.++++.-| ..+.++.|-+.+ +.....+++++. ++
T Consensus 75 ~~~~~~vy~G~-~PTg~~lHLGh~v~~---~~~~~lQ~~~~-----~~v~i~I~D~~~-------~l~~~~~~e~i~-~~ 137 (395)
T 3i05_A 75 SGQPFYLYTGR-GPSSESMHMGHLIPF---MFTKWLQDSFR-----VPLVIQMTDDEK-------FYFRNIPMEQVE-AM 137 (395)
T ss_dssp TTCCEEEEEEE-CCCSSCCBGGGSHHH---HHHHHHHHHHT-----CCEEEEECHHHH-------HHHSCCCHHHHH-HH
T ss_pred cCCCeEEEEee-cCCCccchHHHHHHH---HHHHHHHHhcC-----CcEEEEEcchHH-------HhcCCCCHHHHH-HH
Confidence 34567777765 7889 6999997554 34444555557 777776443321 111236666654 44
Q ss_pred HHHHHHHHhccCCcCCc
Q psy2399 89 SSNRKKYLDGFYIKFDN 105 (232)
Q Consensus 89 ~~~~~~~l~~lgI~~d~ 105 (232)
...+.+++.++|++.+.
T Consensus 138 ~~~~~~~~lA~GlDp~k 154 (395)
T 3i05_A 138 TTENIKDIIAMGFDPEL 154 (395)
T ss_dssp HHHHHHHHHTTTCCTTS
T ss_pred HHHHHHHHHHcCCCCCc
Confidence 45666777889997764
No 59
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=94.80 E-value=0.081 Score=48.19 Aligned_cols=79 Identities=11% Similarity=0.131 Sum_probs=49.1
Q ss_pred CCCcEEEEcCCCCCC-CcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHH
Q psy2399 10 DVRRIFVTTALPYAN-GELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (232)
Q Consensus 10 ~~~~~~v~~~~P~~n-G~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~ 88 (232)
.++++.|.++. -|| |.|||||..+.+. +.+++...| .++.++.|- .++.--. .++++++. ++
T Consensus 105 ~~~~~~vy~G~-dPTag~LHLGh~v~~~~---~~~lQ~~~G-----~~~iilIgD-~ta~igd------~lt~e~i~-~n 167 (437)
T 1r6u_A 105 NKKPFYLYTGR-GPSSEAMHVGHLIPFIF---TKWLQDVFN-----VPLVIQMTD-DEKYLWK------DLTLDQAY-GD 167 (437)
T ss_dssp TTCCEEEEEEE-CCCSSCCBHHHHHHHHH---HHHHHHHHT-----CCEEEEECH-HHHHHHS------SCCHHHHH-HH
T ss_pred cCCCcEEEEcc-cCCCCCccHHHHHHHHH---HHHHHHHhC-----CcEEEEEec-ceeeecC------CCCHHHHH-HH
Confidence 34567777765 677 8999999887652 334444478 887776653 3332211 46666644 44
Q ss_pred HHHHHHHHhccCCcCCc
Q psy2399 89 SSNRKKYLDGFYIKFDN 105 (232)
Q Consensus 89 ~~~~~~~l~~lgI~~d~ 105 (232)
...+..++.++|++.+.
T Consensus 168 ~~~~~~~~lA~GlDp~k 184 (437)
T 1r6u_A 168 AVENAKDIIACGFDINK 184 (437)
T ss_dssp HHHHHHHHHTTTCCGGG
T ss_pred HHHHHHHHHHhCCCccc
Confidence 44456677788987663
No 60
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=94.77 E-value=0.062 Score=51.71 Aligned_cols=78 Identities=15% Similarity=0.097 Sum_probs=46.6
Q ss_pred CcEEEEcCCCCCCCcCCchHHHhHHHHH-HHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q psy2399 12 RRIFVTTALPYANGELHIGHIMEYIQAD-IWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISS 90 (232)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~v~~D-vl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~ 90 (232)
++..|.++. -|||.||||| .++.- .+.++ ...| +++.+..| |-|+.-. .+.|.++++ +.++..
T Consensus 39 ~~~~vy~G~-~PTg~lHLG~---~v~~~~~~~~l-Q~~G-----~~~~~lIa-D~ha~~~----d~~~~~~e~-i~~~~~ 102 (690)
T 3p0j_A 39 PLIRCYDGF-EPSGRMHIAQ---GIFKAVNVNKC-TAAG-----CEFVFWVA-DWFALMN----DKVGGELEK-IRIVGR 102 (690)
T ss_dssp TTEEEEEEE-CCCSCCBHHH---HHHHHHHHHHH-HHTT-----EEEEEEEC-CGGGGGG----CTTTTHHHH-HHHHHH
T ss_pred CCceEEeee-cCCCcchhHh---hHHHHHHHHHH-HHCC-----CcEEEEEe-eeEEEec----CCCcchHHH-HHHHHH
Confidence 455565554 6779999999 22222 23444 4568 89887766 5555321 112333444 344446
Q ss_pred HHHHHHhccCCcCCc
Q psy2399 91 NRKKYLDGFYIKFDN 105 (232)
Q Consensus 91 ~~~~~l~~lgI~~d~ 105 (232)
.+.+++.++|++++.
T Consensus 103 ~~~~~~lA~GlDp~k 117 (690)
T 3p0j_A 103 YLIEVWKAAGMDMDK 117 (690)
T ss_dssp HHHHHHHHTTCCGGG
T ss_pred HHHHHHHHcCCChHH
Confidence 667788899998764
No 61
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=94.66 E-value=0.038 Score=48.76 Aligned_cols=79 Identities=15% Similarity=0.278 Sum_probs=47.1
Q ss_pred CCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCC
Q psy2399 22 YANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYI 101 (232)
Q Consensus 22 ~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~lgI 101 (232)
-|+|.|||||..+.+.. +.+++. + +++.+..+ |.|..-. ..+++++ .++...+..++.++|+
T Consensus 14 ~PTG~lHLGhy~g~l~~--~~~lQ~--~-----~~~~~~ia-D~ha~~~-------~~~~~~~-~~~~~~~~~~~lA~Gl 75 (341)
T 3sz3_A 14 QPSGELSIGNYLGALRQ--WQQMQD--D-----YDCQYCVV-DLHAITV-------RQDPQAL-HEATLDALAICLAVGV 75 (341)
T ss_dssp CSSSCCBHHHHHHTGGG--HHHHHH--H-----SEEEEEEC-HHHHTTS-------CCCHHHH-HHHHHHHHHHHHHTTC
T ss_pred CCCCcccHHHHHHHHHH--HHHHHh--c-----CeEEEEEe-cceeEcC-------CCCHHHH-HHHHHHHHHHHHHcCC
Confidence 56799999999876632 233433 5 67766543 5554331 2466554 4445567778889999
Q ss_pred cCCc--cccCC-ChhHHHHH
Q psy2399 102 KFDN--WYSTD-SIENIDLV 118 (232)
Q Consensus 102 ~~d~--~~~t~-~~~~~~~v 118 (232)
+++. ++.-| -++|.+..
T Consensus 76 Dp~k~~i~~qS~v~~~~el~ 95 (341)
T 3sz3_A 76 DPKKSTLFVQSHVPEHAQLG 95 (341)
T ss_dssp CTTTSEEEEGGGCTHHHHHH
T ss_pred ChhhcEEEeccchhhhHHHH
Confidence 8874 33333 34454433
No 62
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=94.37 E-value=0.056 Score=48.27 Aligned_cols=79 Identities=14% Similarity=0.037 Sum_probs=43.6
Q ss_pred cEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHH----H
Q psy2399 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINN----I 88 (232)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~----~ 88 (232)
++.|.++. -|||.|||||....+ -.+.+++ ..| +++.+..| |.|+.- ..+.|.+++++... +
T Consensus 33 ~~~vy~G~-~PTg~lHlG~yl~~l--~~~~~lQ-~~G-----~~~~~~ia-D~ha~~----~~~~g~~~e~i~~~~~~~~ 98 (375)
T 2cyc_A 33 PLQHYIGF-EISGYIHLGTGLMAG--AKIADFQ-KAG-----IKTRVFLA-DWHSWI----NDKLGGDLEVIQEVALKYF 98 (375)
T ss_dssp CCBEEEEE-CCCSCCBHHHHHHHH--HHHHHHH-HTT-----CBCEEEEC-HHHHHH----TTGGGGCHHHHHHHHHHTH
T ss_pred CcEEEeCC-CCCCCcCchHHHHHH--HHHHHHH-HCC-----CcEEEEec-CcEEEc----CCCCCCCHHHHHHHHHHHH
Confidence 33444443 567999999944322 2333444 468 88777654 333322 12234455554433 3
Q ss_pred HHHHHHHHhccCCcCCc
Q psy2399 89 SSNRKKYLDGFYIKFDN 105 (232)
Q Consensus 89 ~~~~~~~l~~lgI~~d~ 105 (232)
...+.+++.++|++++.
T Consensus 99 ~~~~~~~~la~G~dp~k 115 (375)
T 2cyc_A 99 KVGMEKSIEVMGGDPKK 115 (375)
T ss_dssp HHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHhCCCccc
Confidence 33444888899998763
No 63
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=93.82 E-value=0.058 Score=47.65 Aligned_cols=65 Identities=17% Similarity=0.225 Sum_probs=40.8
Q ss_pred CCCCcCCchHHHhHHHHHHHHHHHHH-cCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccC
Q psy2399 22 YANGELHIGHIMEYIQADIWVRFQCM-QQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFY 100 (232)
Q Consensus 22 ~~nG~lHiGH~~~~v~~Dvl~R~lr~-~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~lg 100 (232)
-|+|.|||||..+.+. .|.++ .+ +++.+..+ |.|..-. ..+|+++ .++......++.++|
T Consensus 23 ~PTG~lHLGh~vg~l~-----~~~~lQ~~-----~~~~~~ia-D~hA~t~-------~~~~~~~-~~~~~~~~~~~lA~G 83 (346)
T 3n9i_A 23 QPSGELTIGNYMGALR-----QWVQMQDD-----YDCIYCIV-DLHAITA-------RQDPALL-RKRTLDTLALYLACG 83 (346)
T ss_dssp CSCSCCBHHHHHHTHH-----HHHTTTTT-----SEEEEEEC-HHHHTTS-------CCCHHHH-HHHHHHHHHHHHHHT
T ss_pred CCCCcccHHHHHHHHH-----HHHHHHhh-----CcEEEEEe-cceeecC-------CCCHHHH-HHHHHHHHHHHHHcC
Confidence 5679999999887652 22222 25 77766553 5554331 2456554 444456677788899
Q ss_pred CcCCc
Q psy2399 101 IKFDN 105 (232)
Q Consensus 101 I~~d~ 105 (232)
++++.
T Consensus 84 lDp~k 88 (346)
T 3n9i_A 84 IDPKK 88 (346)
T ss_dssp CCTTT
T ss_pred CCccc
Confidence 98874
No 64
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=93.67 E-value=0.13 Score=45.28 Aligned_cols=69 Identities=19% Similarity=0.256 Sum_probs=38.3
Q ss_pred CCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCC
Q psy2399 22 YANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYI 101 (232)
Q Consensus 22 ~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~lgI 101 (232)
-|||.|||||..+.+. -+.++++.-+ +++.+..| |.|+.-.. + +-+++++ .++...+..++.++|+
T Consensus 9 ~PTg~lHlGh~~g~l~--~~~~lQ~~G~-----~~~~~~Ia-D~~a~~~~----~-~~~~~~i-~~~~~~~~~~~la~Gl 74 (337)
T 2el7_A 9 QPSGEIHIGNYLGAIK--QWVAIGEKLG-----RDAFFCIV-DYHALTNP----L-AYDPSTL-AQRTFEAALVNIAAGL 74 (337)
T ss_dssp CSCSCCBHHHHHTHHH--HHHHHHHHHG-----GGEEEEEC-GGGGGGST----T-TSCHHHH-HHHHHHHHHHHHHHTC
T ss_pred CCCCcccHHHHHHHHH--HHHHHHhcCC-----CCEEEEEe-CceeecCC----C-CCCHHHH-HHHHHHHHHHHHHhCC
Confidence 4668999999987752 2334554432 35544332 33432210 0 2345444 4444555667778999
Q ss_pred cCC
Q psy2399 102 KFD 104 (232)
Q Consensus 102 ~~d 104 (232)
+++
T Consensus 75 dp~ 77 (337)
T 2el7_A 75 DPE 77 (337)
T ss_dssp CTT
T ss_pred Chh
Confidence 876
No 65
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=90.28 E-value=0.14 Score=46.41 Aligned_cols=79 Identities=16% Similarity=0.215 Sum_probs=40.3
Q ss_pred cEEEEcCCCCCCCc-CCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChh--hHHHHHHHHHcCCCHHHHHHHHH
Q psy2399 13 RIFVTTALPYANGE-LHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAH--GAAIMIAAEKAGMTPKEFINNIS 89 (232)
Q Consensus 13 ~~~v~~~~P~~nG~-lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~--G~~i~~~a~~~g~~~~e~~~~~~ 89 (232)
+..|.++. -|||+ |||||... .-.+.+++ ..| +++.++.|-.+. |.|--...++.-++++++. ++.
T Consensus 32 ~~~iy~G~-dPTg~sLHlGh~v~---l~~~~~lQ-~~G-----~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~-~n~ 100 (420)
T 1jil_A 32 QVTLYCGA-DPTADSLHIGHLLP---FLTLRRFQ-EHG-----HRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVD-KNI 100 (420)
T ss_dssp CCEEEEEE-CCSSSSCBHHHHHH---HHHHHHHH-HTT-----CEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHH-HHH
T ss_pred CCEEEEee-CCCCCCccHHHHHH---HHHHHHHH-HCC-----CcEEEEEcCceeEecCCCccccccccCCHHHHH-HHH
Confidence 34454444 67798 99999663 33344444 568 888877653321 2220000011113555443 444
Q ss_pred HHHHHHHhccCCcC
Q psy2399 90 SNRKKYLDGFYIKF 103 (232)
Q Consensus 90 ~~~~~~l~~lgI~~ 103 (232)
..+++++.++ +++
T Consensus 101 ~~~~~~~~~~-ld~ 113 (420)
T 1jil_A 101 EGISKQMHNI-FEF 113 (420)
T ss_dssp HHHHHHHHHH-SCC
T ss_pred HHHHHHHHHH-hCC
Confidence 5555655555 544
No 66
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=90.00 E-value=0.64 Score=34.36 Aligned_cols=65 Identities=6% Similarity=-0.046 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhccCC-cCC---ccccCCChhHHHHHHHHHHHHHhhcC-CEE------ecccceeeccCCCcc
Q psy2399 83 EFINNISSNRKKYLDGFYI-KFD---NWYSTDSIENIDLVQKIYDTLYNKAK-LII------NKKINQFFDPIKNIF 148 (232)
Q Consensus 83 e~~~~~~~~~~~~l~~lgI-~~d---~~~~t~~~~~~~~v~~~~~~L~~~kG-~iy------~~~~~~~~~~~~~~~ 148 (232)
.++..+.+.+.+..+.=|. ... ..+...+-.+.+..+..|..+. +.- .+. +.....|+|..|+..
T Consensus 7 si~~~i~~~~~~~A~~~g~~~V~~V~l~IG~ls~v~~e~l~f~f~~~~-~gt~~~e~a~L~i~~~p~~~~C~~CG~~ 82 (119)
T 2kdx_A 7 SVVSSLIALCEEHAKKNQAHKIERVVVGIGERSAMDKSLFVSAFETFR-EESLVCKDAILDIVDEKVELECKDCSHV 82 (119)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCEEEEEEETTSCCCHHHHHHHHHHHG-GGCTTTSSCCEEEEEECCEEECSSSSCE
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEEEeehhccccHHHHHHHHHHHH-hCChhhcCcEEEEEeccceEEcCCCCCE
Confidence 4566666777776666565 222 2334444467788888888886 443 222 334456665555543
No 67
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=89.65 E-value=0.74 Score=41.76 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=26.9
Q ss_pred CCcEEEEcCCCCCCCc-CCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCC
Q psy2399 11 VRRIFVTTALPYANGE-LHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICAD 63 (232)
Q Consensus 11 ~~~~~v~~~~P~~nG~-lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~ 63 (232)
++++.|.++. -|||+ |||||.. .--.+.+++ ..| +++.++.|-
T Consensus 35 ~~~~~vy~G~-dPTg~sLHlGh~v---~l~~l~~lQ-~~G-----~~~i~lIgD 78 (432)
T 1h3f_A 35 GRPLTVKLGA-DPTRPDLHLGHAV---VLRKMRQFQ-ELG-----HKVVLIIGD 78 (432)
T ss_dssp CSCCEEEEEE-CTTCCSCBHHHHH---HHHHHHHHH-HTT-----CEEEEEECC
T ss_pred CCCcEEEEcc-cCCCCCCchhhHH---HHHHHHHHH-HCC-----CCEEEEEcc
Confidence 3445555544 67785 9999976 234444554 468 888776653
No 68
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=89.40 E-value=0.65 Score=35.43 Aligned_cols=65 Identities=12% Similarity=-0.005 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhccCC-cCC---ccccCCChhHHHHHHHHHHHHHhhcCCEEe-------cccceeeccCCCccc
Q psy2399 83 EFINNISSNRKKYLDGFYI-KFD---NWYSTDSIENIDLVQKIYDTLYNKAKLIIN-------KKINQFFDPIKNIFL 149 (232)
Q Consensus 83 e~~~~~~~~~~~~l~~lgI-~~d---~~~~t~~~~~~~~v~~~~~~L~~~kG~iy~-------~~~~~~~~~~~~~~l 149 (232)
.++..+.+.+.+..+.-|. ... ..+...+..+.+..+..|..+. + |-+.+ .....|+|..|+...
T Consensus 5 sia~~iv~~v~~~A~~~g~~~V~~V~l~IG~ls~v~~e~l~faf~~~~-~-gt~~e~A~L~i~~~p~~~~C~~CG~~~ 80 (139)
T 3a43_A 5 ALADAIVRTVLDYAQREGASRVKAVRVVLGELQDVAEDIVKFAMEQLF-A-GTIAEGAEIEFVEEEAVFKCRNCNYEW 80 (139)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEEEEEETTCCCCHHHHHHHHHHHH-T-TSTTTTCEEEEEEECCEEEETTTCCEE
T ss_pred HHHHHHHHHHHHHHHHcCCCeehhHHhhHHHHhhhhHHHHHHHHHHHH-c-CCcccCCEEEEEecCCcEECCCCCCEE
Confidence 4566667777777766665 222 2334444467778888888876 4 33322 345667766666543
No 69
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=88.88 E-value=0.45 Score=38.25 Aligned_cols=35 Identities=0% Similarity=-0.051 Sum_probs=22.4
Q ss_pred ChhHHHHHHHHHHHHHhhcCCEEecccceeeccCCC
Q psy2399 111 SIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKN 146 (232)
Q Consensus 111 ~~~~~~~v~~~~~~L~~~kG~iy~~~~~~~~~~~~~ 146 (232)
..+|......++.+|. ....+.+.....|-|+.|+
T Consensus 128 E~ehe~~~~~~l~~l~-~~~~~~~~~~~~~~C~~CG 162 (191)
T 1lko_A 128 EEFHEKRFLDFARNIK-EGRVFLREQATKWRCRNCG 162 (191)
T ss_dssp HHHHHHHHHHHHHHHH-HTCSSEEEEEEEEEETTTC
T ss_pred HHHHHHHHHHHHHhhh-cccccccCCCceEEECCCC
Confidence 4468888999999987 5444444444566654444
No 70
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=88.65 E-value=0.3 Score=43.21 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=25.2
Q ss_pred cEEEEcCCCCCCCc-CCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecC
Q psy2399 13 RIFVTTALPYANGE-LHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICA 62 (232)
Q Consensus 13 ~~~v~~~~P~~nG~-lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g 62 (232)
+..|.++. -|+|+ |||||+.. + -.+.+++ ..| +++.++.|
T Consensus 46 ~~~vy~G~-~PTg~sLHLGhl~~-l--~~~~~lQ-~~G-----~~~~~lIa 86 (356)
T 2pid_A 46 PQTIYCGF-DPTADSLHVGHLLA-L--LGLFHLQ-RAG-----HNVIALVG 86 (356)
T ss_dssp CCEEEEEE-CCSSSSCBHHHHHH-H--HHHHHHH-HTT-----CEEEEEEC
T ss_pred CCEEEEee-cCCCCcccHHHHHH-H--HHHHHHH-HCC-----CcEEEEEc
Confidence 35555544 67796 99999442 2 2355554 468 88877664
No 71
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=88.51 E-value=0.29 Score=44.26 Aligned_cols=41 Identities=22% Similarity=0.341 Sum_probs=26.0
Q ss_pred cEEEEcCCCCCCCc-CCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCC
Q psy2399 13 RIFVTTALPYANGE-LHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICAD 63 (232)
Q Consensus 13 ~~~v~~~~P~~nG~-lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~ 63 (232)
+..|.++. -|||+ |||||... .-.+.+++ ..| +++.++.|-
T Consensus 30 ~~~iy~G~-dPTg~sLHlGh~v~---l~~l~~lQ-~~G-----~~~i~lIgd 71 (419)
T 2ts1_A 30 RVTLYCGF-DPTADSLHIGHLAT---ILTMRRFQ-QAG-----HRPIALVGG 71 (419)
T ss_dssp CCEEEEEE-CCSSSSCBGGGHHH---HHHHHHHH-HTT-----CEEEEEECT
T ss_pred CCEEEEee-CCCCCCccHHHHHH---HHHHHHHH-HCC-----CcEEEEEcC
Confidence 34444443 67799 99999663 33444444 568 888877653
No 72
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=87.91 E-value=0.42 Score=41.62 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=25.3
Q ss_pred cEEEEcCCCCCCCc-CCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecC
Q psy2399 13 RIFVTTALPYANGE-LHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICA 62 (232)
Q Consensus 13 ~~~v~~~~P~~nG~-lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g 62 (232)
+..|.++. -|+|+ |||||... .-.+.++ ...| +++.++.|
T Consensus 33 ~~~vy~G~-~PTg~slHlGh~l~---l~~~~~l-Q~~g-----~~~~~~i~ 73 (322)
T 2yxn_A 33 PIALVCGF-DPTADSLHLGHLVP---LLCLKRF-QQAG-----HKPVALVG 73 (322)
T ss_dssp CCEEEEEE-CCSSSSCBHHHHHH---HHHHHHH-HHTT-----CEEEEEEC
T ss_pred CCEEEEee-cCCCCcccHHHHHH---HHHHHHH-HHcC-----CcEEEEEc
Confidence 44454444 67799 99999662 3334444 4558 88877665
No 73
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=87.27 E-value=0.12 Score=35.97 Aligned_cols=37 Identities=16% Similarity=0.298 Sum_probs=16.6
Q ss_pred ccCCCcccccceeccCCCCCCccccCCCcCccCCCCC
Q psy2399 142 DPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIY 178 (232)
Q Consensus 142 ~~~~~~~l~~~~v~g~cp~c~~~~~~g~~Ce~Cg~~~ 178 (232)
||.++..|.-.--...|+.|++.-...-+|+.||..+
T Consensus 5 CP~C~~~l~~~~~~~~C~~C~~~~~~~afCPeCgq~L 41 (81)
T 2jrp_A 5 CPVCHHALERNGDTAHCETCAKDFSLQALCPDCRQPL 41 (81)
T ss_dssp CSSSCSCCEECSSEEECTTTCCEEEEEEECSSSCSCC
T ss_pred CCCCCCccccCCCceECccccccCCCcccCcchhhHH
Confidence 4555554433222334555554433334455555544
No 74
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=86.91 E-value=0.6 Score=41.82 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=25.4
Q ss_pred cEEEEcCCCCCCCc-CCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecC
Q psy2399 13 RIFVTTALPYANGE-LHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICA 62 (232)
Q Consensus 13 ~~~v~~~~P~~nG~-lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g 62 (232)
+..|.++. -|||+ |||||... .-.+.+++ ..| +++.++.|
T Consensus 64 ~~~vy~G~-dPTg~sLHlGhlv~---l~~l~~lQ-~~G-----~~~~~lIg 104 (392)
T 1y42_X 64 RIGAYVGI-DPTAPSLHVGHLLP---LMPLFWMY-LEG-----YKAFTLIG 104 (392)
T ss_dssp CCEEEEEE-CCCSSSCBGGGHHH---HHHHHHHH-HHT-----CEEEEEEC
T ss_pred CCEEEEee-cCCCCCccHHHHHH---HHHHHHHH-HcC-----CcEEEEEc
Confidence 34444443 67799 99999763 23355554 458 88877654
No 75
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=86.60 E-value=1.9 Score=41.41 Aligned_cols=75 Identities=12% Similarity=0.033 Sum_probs=47.6
Q ss_pred CCCcCCchHHHhHHHHHHHHHHHHHc-CCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCC
Q psy2399 23 ANGELHIGHIMEYIQADIWVRFQCMQ-QDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYI 101 (232)
Q Consensus 23 ~nG~lHiGH~~~~v~~Dvl~R~lr~~-G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~lgI 101 (232)
++|.+||||+-...- ++..|++.. | .+|.++.+-++.= .-++.|.+++ -+.++.....+++.++|.
T Consensus 390 s~g~lHLGh~v~~~k--~l~~~~~~~~g-----~~v~ilIaD~~A~-----i~d~~g~~~e-~i~~~~~y~~~~~~alG~ 456 (690)
T 3p0j_A 390 ALLKVPLDVAEGMIK--VTKDFIAAHPE-----GTVTLVLPDWSAV-----ASDEITGVEK-DISAALQVNCALLKAYGL 456 (690)
T ss_dssp CCSSCBHHHHHHHHH--HHHHHHHHCSS-----CEEEEEECTTHHH-----HTTCTTCCHH-HHHHHHHHHHHHHHHHTC
T ss_pred CCCCcccchHHHHHH--HHHHHHHHcCC-----CeEEEEEecchhh-----hCCCCCCCHH-HHHHHHHHHHHHHHhcCC
Confidence 789999999987543 345666664 6 7888887655311 1123455544 445556777888999998
Q ss_pred cC-CccccCC
Q psy2399 102 KF-DNWYSTD 110 (232)
Q Consensus 102 ~~-d~~~~t~ 110 (232)
+. -.|++.|
T Consensus 457 d~k~~fv~~S 466 (690)
T 3p0j_A 457 PSSVKIVTEN 466 (690)
T ss_dssp CTTSEEEEHH
T ss_pred CcCeEEEECC
Confidence 63 2344444
No 76
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=85.81 E-value=0.83 Score=36.05 Aligned_cols=21 Identities=14% Similarity=-0.029 Sum_probs=14.1
Q ss_pred ChhHHHHHHHHHHHHHhhcCCEE
Q psy2399 111 SIENIDLVQKIYDTLYNKAKLII 133 (232)
Q Consensus 111 ~~~~~~~v~~~~~~L~~~kG~iy 133 (232)
...|.+....++..|. +|..+
T Consensus 113 E~~H~~~~~~~l~~l~--~~~~~ 133 (170)
T 3pwf_A 113 EKIHAELYRKAKEKAE--KGEDI 133 (170)
T ss_dssp HHHHHHHHHHHHHHHT--TTCCC
T ss_pred HHHHHHHHHHHHHHHh--cCCcC
Confidence 4468888888888775 44443
No 77
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=85.77 E-value=0.47 Score=41.61 Aligned_cols=37 Identities=22% Similarity=0.392 Sum_probs=22.9
Q ss_pred CcccccceeccCCCCCCccc-------cCC-CcCccCCCCCCCcc
Q psy2399 146 NIFLPDRYIKGECPICNAKD-------QYG-DFCECCSSIYTPTK 182 (232)
Q Consensus 146 ~~~l~~~~v~g~cp~c~~~~-------~~g-~~Ce~Cg~~~~~~~ 182 (232)
+.|-++-.+...||.|+... ..| -.|.+||.++.+..
T Consensus 12 ~~~~~~~~~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~e~~ 56 (345)
T 3k7a_M 12 GRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKL 56 (345)
T ss_dssp -----CCCCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCCCCC
T ss_pred cccCccccCCCcCcCCCCCCCceEEECCCCCEecCCCCeEccccc
Confidence 33566666677899998851 123 46999999987543
No 78
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=85.09 E-value=0.73 Score=41.80 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=25.1
Q ss_pred cEEEEcCCCCCCCc-CCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecC
Q psy2399 13 RIFVTTALPYANGE-LHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICA 62 (232)
Q Consensus 13 ~~~v~~~~P~~nG~-lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g 62 (232)
+..|.++. -|||+ |||||+.. .-.+.+++ ..| +++.++.|
T Consensus 32 ~~~iy~G~-dPTg~sLHLGhlv~---l~~l~~lQ-~~G-----~~~i~lIg 72 (432)
T 2jan_A 32 PMTVYAGF-DPTAPSLHAGHLVP---LLTLRRFQ-RAG-----HRPIVLAG 72 (432)
T ss_dssp CCEEEEEE-CCSSSSCBGGGHHH---HHHHHHHH-HTT-----CEEEEEEC
T ss_pred CCEEEEee-CCCCCCcCHHHHHH---HHHHHHHH-HCC-----CcEEEEEc
Confidence 44444443 67795 99999442 23455554 468 88887764
No 79
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=84.94 E-value=0.35 Score=37.70 Aligned_cols=32 Identities=13% Similarity=0.180 Sum_probs=21.4
Q ss_pred CCCcCccCCCCCCCccccCCcccCCCCccEEEE
Q psy2399 167 YGDFCECCSSIYTPTKLINPYSILSGTKPIIKS 199 (232)
Q Consensus 167 ~g~~Ce~Cg~~~~~~~l~~~~~~~~g~~~~~~~ 199 (232)
+...|.+||+.+... -....|+.||+++...+
T Consensus 131 ~~y~C~~Cg~~~~~~-~~~~~Cp~CG~~~~~~~ 162 (165)
T 2lcq_A 131 WRYVCIGCGRKFSTL-PPGGVCPDCGSKVKLIP 162 (165)
T ss_dssp CCEEESSSCCEESSC-CGGGBCTTTCCBEEECC
T ss_pred EEEECCCCCCcccCC-CCCCcCCCCCCcceeCC
Confidence 445699999888643 11238999999865443
No 80
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=84.18 E-value=0.67 Score=37.62 Aligned_cols=31 Identities=10% Similarity=0.078 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCCCCcCCchHHHhHHHHHHHH
Q psy2399 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWV 42 (232)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~ 42 (232)
..+|....-|++.-|. -+-++...+.+...+
T Consensus 13 ~~~~~~~~~~~~~~g~-T~~nL~~a~~gE~~a 43 (202)
T 1yuz_A 13 ATNFNMVADSKTAVGS-TLENLKAAIAGETGA 43 (202)
T ss_dssp CSCCCCCSSCCCCCCC-HHHHHHHHHHHHHHH
T ss_pred CccceecCCCcccchH-HHHHHHHHHHHHHHH
Confidence 3455555555565555 445555555544444
No 81
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=83.64 E-value=0.31 Score=34.92 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=8.1
Q ss_pred hcCCEEecccceeeccCCCcccc
Q psy2399 128 KAKLIINKKINQFFDPIKNIFLP 150 (232)
Q Consensus 128 ~kG~iy~~~~~~~~~~~~~~~l~ 150 (232)
..|++-++......||.|+..|.
T Consensus 21 ~~~~~~~~~~M~~~CP~Cq~eL~ 43 (101)
T 2jne_A 21 SSGLVPRGSHMELHCPQCQHVLD 43 (101)
T ss_dssp ----------CCCBCSSSCSBEE
T ss_pred ccccccCcccccccCccCCCcce
Confidence 45555555544466777766654
No 82
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=82.54 E-value=0.66 Score=29.98 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=16.2
Q ss_pred CCCCCCcc----c-cCC-CcCccCCCCCCCc
Q psy2399 157 ECPICNAK----D-QYG-DFCECCSSIYTPT 181 (232)
Q Consensus 157 ~cp~c~~~----~-~~g-~~Ce~Cg~~~~~~ 181 (232)
.||.|+.. + ..| -.|..||.++...
T Consensus 13 ~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e~ 43 (58)
T 1dl6_A 13 TCPNHPDAILVEDYRAGDMICPECGLVVGDR 43 (58)
T ss_dssp SBTTBSSSCCEECSSSCCEECTTTCCEECCS
T ss_pred cCcCCCCCceeEeCCCCeEEeCCCCCEEecc
Confidence 69988762 1 223 4588888877654
No 83
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=81.90 E-value=1.3 Score=27.34 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=23.5
Q ss_pred cCccCCCCCCCcccc---CCcccCCCCccEEEE
Q psy2399 170 FCECCSSIYTPTKLI---NPYSILSGTKPIIKS 199 (232)
Q Consensus 170 ~Ce~Cg~~~~~~~l~---~~~~~~~g~~~~~~~ 199 (232)
-|-.||+.++.+||. .-+|+.||-.+..+-
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGyrii~Kv 37 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMV 37 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEECC
T ss_pred EeeccCCCccHHHHhhCCCcccCccCcEEEEEe
Confidence 388899999988883 458999998877543
No 84
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=81.84 E-value=0.39 Score=33.33 Aligned_cols=17 Identities=29% Similarity=0.696 Sum_probs=8.3
Q ss_pred CCCCCCccccCCCcCccCCC
Q psy2399 157 ECPICNAKDQYGDFCECCSS 176 (232)
Q Consensus 157 ~cp~c~~~~~~g~~Ce~Cg~ 176 (232)
.||.|+.+.+ .|-.||.
T Consensus 33 fCPeCgq~Le---~lkACGA 49 (81)
T 2jrp_A 33 LCPDCRQPLQ---VLKACGA 49 (81)
T ss_dssp ECSSSCSCCC---EEEETTE
T ss_pred cCcchhhHHH---HHHhcCC
Confidence 5555555442 2445554
No 85
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=81.76 E-value=0.7 Score=28.62 Aligned_cols=27 Identities=26% Similarity=0.744 Sum_probs=17.4
Q ss_pred CCCCCCc-c---c-cCC-CcCccCCCCCCCccc
Q psy2399 157 ECPICNA-K---D-QYG-DFCECCSSIYTPTKL 183 (232)
Q Consensus 157 ~cp~c~~-~---~-~~g-~~Ce~Cg~~~~~~~l 183 (232)
.||.|+. . + ..| -.|..||..+....+
T Consensus 7 ~CP~C~~~~l~~d~~~gelvC~~CG~v~~e~~i 39 (50)
T 1pft_A 7 VCPACESAELIYDPERGEIVCAKCGYVIEENII 39 (50)
T ss_dssp SCTTTSCCCEEEETTTTEEEESSSCCBCCCCCC
T ss_pred eCcCCCCcceEEcCCCCeEECcccCCccccccc
Confidence 5888877 2 1 112 468899988876554
No 86
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=81.00 E-value=0.69 Score=30.20 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=16.2
Q ss_pred cCCCCCCccccCCCcCccCCC
Q psy2399 156 GECPICNAKDQYGDFCECCSS 176 (232)
Q Consensus 156 g~cp~c~~~~~~g~~Ce~Cg~ 176 (232)
-.||.||+....--.|..||.
T Consensus 31 ~~c~~cGe~~~~H~vc~~CG~ 51 (60)
T 3v2d_5 31 VPCPECKAMKPPHTVCPECGY 51 (60)
T ss_dssp EECTTTCCEECTTSCCTTTCE
T ss_pred eECCCCCCeecceEEcCCCCc
Confidence 358888888777777888884
No 87
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=80.81 E-value=1 Score=29.37 Aligned_cols=21 Identities=33% Similarity=0.836 Sum_probs=17.2
Q ss_pred CCCCCCccccCCCcCccCCCC
Q psy2399 157 ECPICNAKDQYGDFCECCSSI 177 (232)
Q Consensus 157 ~cp~c~~~~~~g~~Ce~Cg~~ 177 (232)
.||.||+....--.|..||.+
T Consensus 32 ~c~~cG~~~~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 32 ECPQCHGKKLSHHICPNCGYY 52 (60)
T ss_dssp ECTTTCCEECTTBCCTTTCBS
T ss_pred ECCCCCCEeCCceEcCCCCcC
Confidence 689999888777889999954
No 88
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=76.97 E-value=1.2 Score=37.01 Aligned_cols=80 Identities=15% Similarity=0.250 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhhcCCEEecccceeeccCC----Ccccccce--eccCCCCCCccccCCCcCccCCCCCCCc------
Q psy2399 114 NIDLVQKIYDTLYNKAKLIINKKINQFFDPIK----NIFLPDRY--IKGECPICNAKDQYGDFCECCSSIYTPT------ 181 (232)
Q Consensus 114 ~~~~v~~~~~~L~~~kG~iy~~~~~~~~~~~~----~~~l~~~~--v~g~cp~c~~~~~~g~~Ce~Cg~~~~~~------ 181 (232)
-...++.++.+|. +.|++...++..-+++.. ..+|.+.+ -...|..|.+-...|..|.+|+..+=..
T Consensus 134 ~~~eae~lL~~lv-~~gWl~~~~g~~~l~~R~l~El~~~l~~~~~~~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~ 212 (238)
T 3nw0_A 134 RKKEAEQVLQKFV-QNKWLIEKEGEFTLHGRAILEMEQYIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYF 212 (238)
T ss_dssp CHHHHHHHHHHHH-HTTSEEEETTEEEECHHHHHHHHHHHHHHCTTTCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHT
T ss_pred CHHHHHHHHHHHH-HhcchhhhCCEEEecCccHHHHHHHHHHhcCCCCCcCcchhhHHhCCcccCccChHHHHHHHHHHH
Confidence 4677899999999 999998765443333322 11222222 2557999999999998899998654211
Q ss_pred -cccCCcccCCCCc
Q psy2399 182 -KLINPYSILSGTK 194 (232)
Q Consensus 182 -~l~~~~~~~~g~~ 194 (232)
.-.++.|+.|+..
T Consensus 213 ~~~~~~~CP~C~~~ 226 (238)
T 3nw0_A 213 QSNAEPRCPHCNDY 226 (238)
T ss_dssp TTCSSCBCTTTCCB
T ss_pred HhCCCCCCCCCCCC
Confidence 1236789999874
No 89
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=75.48 E-value=1.8 Score=28.49 Aligned_cols=33 Identities=15% Similarity=0.142 Sum_probs=23.9
Q ss_pred cCccCCCCCCCccccCCcccCCCCccEEEEccc
Q psy2399 170 FCECCSSIYTPTKLINPYSILSGTKPIIKSSKH 202 (232)
Q Consensus 170 ~Ce~Cg~~~~~~~l~~~~~~~~g~~~~~~~~~~ 202 (232)
.|-.||...+....-.-+|..||+.+..++...
T Consensus 23 ~C~~Cg~~~~l~~~~~iRC~~CG~RILyK~Rt~ 55 (63)
T 3h0g_L 23 LCADCGARNTIQAKEVIRCRECGHRVMYKMRTK 55 (63)
T ss_dssp BCSSSCCBCCCCSSSCCCCSSSCCCCCBCCCCC
T ss_pred ECCCCCCeeecCCCCceECCCCCcEEEEEecCC
Confidence 477788777655545569999999887765544
No 90
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=74.75 E-value=1.2 Score=29.92 Aligned_cols=31 Identities=19% Similarity=0.301 Sum_probs=18.6
Q ss_pred cCccCCCCCCCccccCCcccCCCCccEEEEc
Q psy2399 170 FCECCSSIYTPTKLINPYSILSGTKPIIKSS 200 (232)
Q Consensus 170 ~Ce~Cg~~~~~~~l~~~~~~~~g~~~~~~~~ 200 (232)
.|..||..++..+--..+|+.||+.+..++.
T Consensus 30 ~C~~CG~~~e~~~~d~irCp~CG~RILyK~R 60 (70)
T 1twf_L 30 ICAECSSKLSLSRTDAVRCKDCGHRILLKAR 60 (70)
T ss_dssp ECSSSCCEECCCTTSTTCCSSSCCCCCBCCC
T ss_pred ECCCCCCcceeCCCCCccCCCCCceEeEecC
Confidence 4677776644433334578888886655443
No 91
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=74.50 E-value=1.5 Score=28.66 Aligned_cols=21 Identities=24% Similarity=0.700 Sum_probs=13.6
Q ss_pred CCCCCCccccCCCcCccCCCCC
Q psy2399 157 ECPICNAKDQYGDFCECCSSIY 178 (232)
Q Consensus 157 ~cp~c~~~~~~g~~Ce~Cg~~~ 178 (232)
.||.|+...- ..+|..||...
T Consensus 8 ~C~~CgvYTL-k~~CP~CG~~T 28 (60)
T 2apo_B 8 KCPKCGLYTL-KEICPKCGEKT 28 (60)
T ss_dssp ECTTTCCEES-SSBCSSSCSBC
T ss_pred eCCCCCCEec-cccCcCCCCcC
Confidence 5777776653 56677777653
No 92
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=73.31 E-value=0.57 Score=33.57 Aligned_cols=40 Identities=15% Similarity=0.332 Sum_probs=27.4
Q ss_pred ccCCCCCCccc--cCCC-cCccCCCCCCCccccCCcccCCCCccEEE
Q psy2399 155 KGECPICNAKD--QYGD-FCECCSSIYTPTKLINPYSILSGTKPIIK 198 (232)
Q Consensus 155 ~g~cp~c~~~~--~~g~-~Ce~Cg~~~~~~~l~~~~~~~~g~~~~~~ 198 (232)
.-.||.|..+. ..+. .|+.|+..+. ..+.|+.|+.+++.-
T Consensus 32 ~~~CP~Cq~eL~~~g~~~hC~~C~~~f~----~~a~CPdC~q~LevL 74 (101)
T 2jne_A 32 ELHCPQCQHVLDQDNGHARCRSCGEFIE----MKALCPDCHQPLQVL 74 (101)
T ss_dssp CCBCSSSCSBEEEETTEEEETTTCCEEE----EEEECTTTCSBCEEE
T ss_pred cccCccCCCcceecCCEEECccccchhh----ccccCcchhhHHHHH
Confidence 35799998763 1222 3888888654 457888888888853
No 93
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=70.20 E-value=3.2 Score=26.15 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=16.2
Q ss_pred cCccCCCCCCCcc---------------c-cCCcccCCCCc
Q psy2399 170 FCECCSSIYTPTK---------------L-INPYSILSGTK 194 (232)
Q Consensus 170 ~Ce~Cg~~~~~~~---------------l-~~~~~~~~g~~ 194 (232)
+|..||-++++++ | .+-+|+.||..
T Consensus 5 ~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 5 VCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp ECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred EeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCCc
Confidence 4777777777543 3 23478888864
No 94
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=68.15 E-value=2.2 Score=26.22 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=17.1
Q ss_pred cCccCCCCCCCc--------cc-cCCcccCCCCc
Q psy2399 170 FCECCSSIYTPT--------KL-INPYSILSGTK 194 (232)
Q Consensus 170 ~Ce~Cg~~~~~~--------~l-~~~~~~~~g~~ 194 (232)
+|..||-+++++ +| .+-+|+.||..
T Consensus 6 ~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 6 VCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred ECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 577888887753 33 23489999875
No 95
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=67.37 E-value=3.6 Score=25.95 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=27.3
Q ss_pred eeccCCCCCCccccCCCcCccCCCCCCCccccCCcccCCCCccEEEEccceeEecCChhhHHHHHhh
Q psy2399 153 YIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKW 219 (232)
Q Consensus 153 ~v~g~cp~c~~~~~~g~~Ce~Cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~L~~~~~~~~l~~~ 219 (232)
.+...||.|.... +++...|..|+.....+.... -.+.+++.+|
T Consensus 7 q~~~~C~~C~GsG----------------~~i~~~C~~C~G~G~v~~~~G-------~~~~~~~~~~ 50 (53)
T 3lcz_A 7 DLETTCPNCNGSG----------------REEPEPCPKCLGKGVILTAQG-------STLLHFIKKH 50 (53)
T ss_dssp HHEEECTTTTTSC----------------EETTEECTTTTTSSEEECHHH-------HHHHHHHHHH
T ss_pred ceeccCcCCcccc----------------cCCCCcCCCCCCcEEEEEEeC-------chHHHHHHHH
Confidence 4556788775532 234567888888887666553 2334666666
No 96
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=65.95 E-value=5.8 Score=29.03 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=15.5
Q ss_pred cCccCCCCCCCccccCCcccCCCCcc
Q psy2399 170 FCECCSSIYTPTKLINPYSILSGTKP 195 (232)
Q Consensus 170 ~Ce~Cg~~~~~~~l~~~~~~~~g~~~ 195 (232)
.|.+||..+...+.....|+.||++.
T Consensus 75 ~C~~CG~~~e~~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 75 ECKDCSHVFKPNALDYGVCEKCHSKN 100 (119)
T ss_dssp ECSSSSCEECSCCSTTCCCSSSSSCC
T ss_pred EcCCCCCEEeCCCCCCCcCccccCCC
Confidence 46667766665443222688787763
No 97
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=64.60 E-value=2.8 Score=33.36 Aligned_cols=35 Identities=23% Similarity=0.445 Sum_probs=23.1
Q ss_pred cccceeccCCCCCCcc-------ccCC-CcCccCCCCCCCccc
Q psy2399 149 LPDRYIKGECPICNAK-------DQYG-DFCECCSSIYTPTKL 183 (232)
Q Consensus 149 l~~~~v~g~cp~c~~~-------~~~g-~~Ce~Cg~~~~~~~l 183 (232)
-.+..+.-.||.|+.. ...| -+|.+||.+++...+
T Consensus 15 ~~~ln~~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLEEriI 57 (197)
T 3k1f_M 15 GPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLV 57 (197)
T ss_dssp SSCCCCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCCCCCB
T ss_pred ccccccCeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcCCcee
Confidence 4455566689999872 1244 459999998865433
No 98
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=62.84 E-value=2.9 Score=26.35 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=16.7
Q ss_pred cCccCCCCCCCc---------------cc-cCCcccCCCCc
Q psy2399 170 FCECCSSIYTPT---------------KL-INPYSILSGTK 194 (232)
Q Consensus 170 ~Ce~Cg~~~~~~---------------~l-~~~~~~~~g~~ 194 (232)
+|..||-+++++ +| .+-+|+.||..
T Consensus 4 ~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 4 SCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAP 44 (52)
T ss_dssp EESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred EeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCCC
Confidence 477777777764 34 23489999874
No 99
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=62.19 E-value=2 Score=34.41 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=14.5
Q ss_pred cCccCCCCCCCccccCCcccCCCCcc
Q psy2399 170 FCECCSSIYTPTKLINPYSILSGTKP 195 (232)
Q Consensus 170 ~Ce~Cg~~~~~~~l~~~~~~~~g~~~ 195 (232)
.|..||-+++-.++-+ +|+.||++-
T Consensus 157 ~C~~CG~~~~g~~~p~-~CP~C~~~k 181 (191)
T 1lko_A 157 RCRNCGYVHEGTGAPE-LCPACAHPK 181 (191)
T ss_dssp EETTTCCEEEEEECCS-BCTTTCCBG
T ss_pred EECCCCCEeeCCCCCC-CCCCCcCCH
Confidence 3556666654223222 899998863
No 100
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=62.16 E-value=3.4 Score=26.88 Aligned_cols=19 Identities=26% Similarity=0.847 Sum_probs=9.4
Q ss_pred CCCCCCccccCCCcCccCCC
Q psy2399 157 ECPICNAKDQYGDFCECCSS 176 (232)
Q Consensus 157 ~cp~c~~~~~~g~~Ce~Cg~ 176 (232)
.||.|+...- ...|..||.
T Consensus 7 ~C~~Cg~YTL-k~~CP~CG~ 25 (60)
T 2aus_D 7 KCPKCGRYTL-KETCPVCGE 25 (60)
T ss_dssp ECTTTCCEES-SSBCTTTCS
T ss_pred ECCCCCCEEc-cccCcCCCC
Confidence 4555555432 444555554
No 101
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=59.17 E-value=5.9 Score=30.00 Aligned_cols=18 Identities=6% Similarity=0.004 Sum_probs=10.6
Q ss_pred CCcccCCCCccE-EEEccc
Q psy2399 185 NPYSILSGTKPI-IKSSKH 202 (232)
Q Consensus 185 ~~~~~~~g~~~~-~~~~~~ 202 (232)
...|+.||++-. +..-+-
T Consensus 107 ~~~CP~Cgs~~~~i~~G~e 125 (139)
T 3a43_A 107 FLACPKCGSHDFEVVKGRG 125 (139)
T ss_dssp GCSCSSSSCCCEEEEESSC
T ss_pred CCcCccccCCccEEecCCe
Confidence 457888887643 334333
No 102
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=59.00 E-value=3.6 Score=26.18 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=16.5
Q ss_pred cCccCCCCCCCcc---------------c-cCCcccCCCCc
Q psy2399 170 FCECCSSIYTPTK---------------L-INPYSILSGTK 194 (232)
Q Consensus 170 ~Ce~Cg~~~~~~~---------------l-~~~~~~~~g~~ 194 (232)
+|..||-++++++ | .+-+|+.||..
T Consensus 5 ~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 5 QCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVG 45 (55)
T ss_dssp EETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCC
T ss_pred EeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 4777777776643 4 23489999875
No 103
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=58.37 E-value=2.5 Score=36.97 Aligned_cols=33 Identities=24% Similarity=0.540 Sum_probs=18.0
Q ss_pred cccceeccCCCCCCc--cc-----cCC-CcCccCCCCCCCc
Q psy2399 149 LPDRYIKGECPICNA--KD-----QYG-DFCECCSSIYTPT 181 (232)
Q Consensus 149 l~~~~v~g~cp~c~~--~~-----~~g-~~Ce~Cg~~~~~~ 181 (232)
-++-.+.-.||.|+. +. ..| -.|.+||.++...
T Consensus 15 ~~~l~~~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~e~ 55 (345)
T 4bbr_M 15 GPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDK 55 (345)
T ss_dssp -------CCCSSCCCSSCCEEEEGGGTEEEETTTCBEEESC
T ss_pred CcccccCCcCCCCCCCCCceeEECCCCcEEeCCCCCCccCc
Confidence 344455668999986 11 245 4599999887654
No 104
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=58.35 E-value=4.8 Score=25.27 Aligned_cols=22 Identities=27% Similarity=0.640 Sum_probs=13.2
Q ss_pred cCCCCCCccccCC-CcCccCCCC
Q psy2399 156 GECPICNAKDQYG-DFCECCSSI 177 (232)
Q Consensus 156 g~cp~c~~~~~~g-~~Ce~Cg~~ 177 (232)
-.||.|++..+-| ..|..||..
T Consensus 15 ~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 15 YVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp EECTTTCCEECTTCSSCSSSSSC
T ss_pred ccCCCCCCcCCCCceecCCCCCc
Confidence 3577777665444 446666653
No 105
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=56.58 E-value=5.1 Score=25.44 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=16.7
Q ss_pred cCccCCCCCCCc---------------cc-cCCcccCCCCc
Q psy2399 170 FCECCSSIYTPT---------------KL-INPYSILSGTK 194 (232)
Q Consensus 170 ~Ce~Cg~~~~~~---------------~l-~~~~~~~~g~~ 194 (232)
+|..||-+|+++ +| .+-+|+.||..
T Consensus 5 ~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 5 TCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG 45 (54)
T ss_dssp EETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred ECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCc
Confidence 477777777764 33 24489999874
No 106
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=55.77 E-value=5.2 Score=26.77 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=17.2
Q ss_pred CcCccCCCCCCCcc---------------c-cCCcccCCCCc
Q psy2399 169 DFCECCSSIYTPTK---------------L-INPYSILSGTK 194 (232)
Q Consensus 169 ~~Ce~Cg~~~~~~~---------------l-~~~~~~~~g~~ 194 (232)
.+|..||-++++++ | .+-+|+.||..
T Consensus 8 y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 8 YECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp EEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred EEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 45777887777642 4 23478889875
No 107
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=54.63 E-value=4.6 Score=27.89 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=17.0
Q ss_pred CcCccCCCCCCCc---------------cc-cCCcccCCCCc
Q psy2399 169 DFCECCSSIYTPT---------------KL-INPYSILSGTK 194 (232)
Q Consensus 169 ~~Ce~Cg~~~~~~---------------~l-~~~~~~~~g~~ 194 (232)
.+|..||-+|+++ +| .+-+|+.||.+
T Consensus 28 y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 28 FRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp EEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred EEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 4577777777653 24 23489999874
No 108
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=52.59 E-value=4 Score=28.57 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=16.1
Q ss_pred CcCccCCCCCCCc---------------cc-cCCcccCCCCc
Q psy2399 169 DFCECCSSIYTPT---------------KL-INPYSILSGTK 194 (232)
Q Consensus 169 ~~Ce~Cg~~~~~~---------------~l-~~~~~~~~g~~ 194 (232)
.+|..||-+|+++ +| .+-+|+.||..
T Consensus 36 y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 36 WICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp EEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred EECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 3466677666653 33 23478888874
No 109
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=49.84 E-value=54 Score=24.87 Aligned_cols=82 Identities=12% Similarity=0.053 Sum_probs=49.5
Q ss_pred CCCcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHH
Q psy2399 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (232)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~ 89 (232)
+++++++.+++ |+.|- +-..+++.+++..| ++|.+.-.. .+++++++...
T Consensus 17 ~~~~vlla~~~----gd~Hd------iG~~~va~~l~~~G-----~eVi~lG~~---------------~p~e~lv~aa~ 66 (161)
T 2yxb_A 17 RRYKVLVAKMG----LDGHD------RGAKVVARALRDAG-----FEVVYTGLR---------------QTPEQVAMAAV 66 (161)
T ss_dssp CSCEEEEEEES----SSSCC------HHHHHHHHHHHHTT-----CEEECCCSB---------------CCHHHHHHHHH
T ss_pred CCCEEEEEeCC----CCccH------HHHHHHHHHHHHCC-----CEEEECCCC---------------CCHHHHHHHHH
Confidence 45566666543 67772 23567778899999 999976321 35666554433
Q ss_pred HHHHHHHhccCCcCCccccCCChhHHHHHHHHHHHHHhhcCC
Q psy2399 90 SNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131 (232)
Q Consensus 90 ~~~~~~l~~lgI~~d~~~~t~~~~~~~~v~~~~~~L~~~kG~ 131 (232)
+ ..-+.++++ .+...+...+..+++.|. ++|.
T Consensus 67 ~---~~~diV~lS------~~~~~~~~~~~~~i~~L~-~~g~ 98 (161)
T 2yxb_A 67 Q---EDVDVIGVS------ILNGAHLHLMKRLMAKLR-ELGA 98 (161)
T ss_dssp H---TTCSEEEEE------ESSSCHHHHHHHHHHHHH-HTTC
T ss_pred h---cCCCEEEEE------eechhhHHHHHHHHHHHH-hcCC
Confidence 1 122233332 222257788888888888 7764
No 110
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=49.31 E-value=5.5 Score=24.78 Aligned_cols=8 Identities=38% Similarity=0.995 Sum_probs=4.8
Q ss_pred cCCCCCCc
Q psy2399 156 GECPICNA 163 (232)
Q Consensus 156 g~cp~c~~ 163 (232)
..||.||+
T Consensus 20 k~CP~CG~ 27 (50)
T 3j20_Y 20 KFCPRCGP 27 (50)
T ss_dssp EECSSSCS
T ss_pred ccCCCCCC
Confidence 35666665
No 111
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=49.13 E-value=8.5 Score=29.60 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=11.9
Q ss_pred eeeccCCCcccccceeccCCCCCCc
Q psy2399 139 QFFDPIKNIFLPDRYIKGECPICNA 163 (232)
Q Consensus 139 ~~~~~~~~~~l~~~~v~g~cp~c~~ 163 (232)
.|.|..|+.......-...||.||+
T Consensus 132 ~y~C~~Cg~~~~~~~~~~~Cp~CG~ 156 (165)
T 2lcq_A 132 RYVCIGCGRKFSTLPPGGVCPDCGS 156 (165)
T ss_dssp CEEESSSCCEESSCCGGGBCTTTCC
T ss_pred EEECCCCCCcccCCCCCCcCCCCCC
Confidence 4556666654443222234555544
No 112
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=49.06 E-value=19 Score=18.64 Aligned_cols=19 Identities=21% Similarity=0.454 Sum_probs=16.3
Q ss_pred CchHHH-hHHHHHHHHHHHH
Q psy2399 28 HIGHIM-EYIQADIWVRFQC 46 (232)
Q Consensus 28 HiGH~~-~~v~~Dvl~R~lr 46 (232)
|+|-++ ++++.|-+.++..
T Consensus 2 ~VGKiYA~llI~d~~r~~k~ 21 (23)
T 3dvk_B 2 HMGKIYAAMMIMDYYKQSKV 21 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhc
Confidence 899999 6889999988864
No 113
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=48.35 E-value=18 Score=27.46 Aligned_cols=45 Identities=22% Similarity=0.355 Sum_probs=23.7
Q ss_pred eccCCCcccccceecc--CCCCCCccccCCCcCccCCCCCCCccccCCcccCCCCc
Q psy2399 141 FDPIKNIFLPDRYIKG--ECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTK 194 (232)
Q Consensus 141 ~~~~~~~~l~~~~v~g--~cp~c~~~~~~g~~Ce~Cg~~~~~~~l~~~~~~~~g~~ 194 (232)
|+++.=.-+=+.||.. .||.|+++++.-. ....+.--+|..||+.
T Consensus 87 ~~~~~i~~~L~~yI~~yVlC~~C~sPdT~l~---------k~~r~~~l~C~ACGa~ 133 (139)
T 3cw2_K 87 FSSQVINTLMERFLKAYVECSTCKSLDTILK---------KEKKSWYIVCLACGAQ 133 (139)
T ss_dssp CCSCCSCSTTTTTSSCCSSCCSSSSSCCCSC---------SSCSTTTSSCCC----
T ss_pred eCHHHHHHHHHHHHHHeeECCCCCCcCcEEE---------EeCCeEEEEecCCCCC
Confidence 4444444455666664 6888877764321 1234556788889875
No 114
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=47.88 E-value=9.3 Score=27.64 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=16.1
Q ss_pred cCccCCCCCCCccccCCcccCCCCcc
Q psy2399 170 FCECCSSIYTPTKLINPYSILSGTKP 195 (232)
Q Consensus 170 ~Ce~Cg~~~~~~~l~~~~~~~~g~~~ 195 (232)
.|.+||-.+...--+..+|+.|++.-
T Consensus 69 ~C~~CG~~F~~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 69 QCRKCGFVFKAEINIPSRCPKCKSEW 94 (105)
T ss_dssp BBTTTCCBCCCCSSCCSSCSSSCCCC
T ss_pred ChhhCcCeecccCCCCCCCcCCCCCc
Confidence 47888877632222456888887653
No 115
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=45.66 E-value=53 Score=24.11 Aligned_cols=80 Identities=13% Similarity=0.013 Sum_probs=47.8
Q ss_pred CcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2399 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (232)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~~~~ 91 (232)
+++++.++ -|+.|= +-+.+++.+++..| ++|.++-. ..+++++++...+.
T Consensus 4 ~~vvla~~----~~d~Hd------iG~~~v~~~l~~~G-----~~Vi~lG~---------------~~p~e~~v~~a~~~ 53 (137)
T 1ccw_A 4 KTIVLGVI----GSDCHA------VGNKILDHAFTNAG-----FNVVNIGV---------------LSPQELFIKAAIET 53 (137)
T ss_dssp CEEEEEEE----TTCCCC------HHHHHHHHHHHHTT-----CEEEEEEE---------------EECHHHHHHHHHHH
T ss_pred CEEEEEeC----CCchhH------HHHHHHHHHHHHCC-----CEEEECCC---------------CCCHHHHHHHHHhc
Confidence 45666643 366773 33567889999999 99997742 13566655544422
Q ss_pred HHHHHhccCCcCCccccCCChhHHHHHHHHHHHHHhhcCC
Q psy2399 92 RKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131 (232)
Q Consensus 92 ~~~~l~~lgI~~d~~~~t~~~~~~~~v~~~~~~L~~~kG~ 131 (232)
.-+.++++ .+...+...+.++++.|. ++|.
T Consensus 54 ---~~d~v~lS------~~~~~~~~~~~~~i~~l~-~~g~ 83 (137)
T 1ccw_A 54 ---KADAILVS------SLYGQGEIDCKGLRQKCD-EAGL 83 (137)
T ss_dssp ---TCSEEEEE------ECSSTHHHHHTTHHHHHH-HTTC
T ss_pred ---CCCEEEEE------ecCcCcHHHHHHHHHHHH-hcCC
Confidence 22333332 222246667777888887 7663
No 116
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=45.66 E-value=3.6 Score=28.53 Aligned_cols=11 Identities=0% Similarity=0.030 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q psy2399 116 DLVQKIYDTLY 126 (232)
Q Consensus 116 ~~v~~~~~~L~ 126 (232)
..+.+.+.++.
T Consensus 11 ~~lRk~vk~ie 21 (83)
T 1vq8_Z 11 RVSRRRVAEIE 21 (83)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 33444444443
No 117
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=45.09 E-value=5.1 Score=26.69 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=11.8
Q ss_pred CCCCCCccccCC-----CcCccCCCCC
Q psy2399 157 ECPICNAKDQYG-----DFCECCSSIY 178 (232)
Q Consensus 157 ~cp~c~~~~~~g-----~~Ce~Cg~~~ 178 (232)
.||.|+.+-.+. -.|..||..|
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 10 ACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp CCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred eCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 577776653322 2466666554
No 118
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=42.56 E-value=19 Score=27.58 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=16.2
Q ss_pred CCCCCCccccCCCcCccCCCCCCCccccCCcccCCCCc
Q psy2399 157 ECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTK 194 (232)
Q Consensus 157 ~cp~c~~~~~~g~~Ce~Cg~~~~~~~l~~~~~~~~g~~ 194 (232)
.||.|+++++.-. ....+.--+|..||+.
T Consensus 106 lC~~C~sPdT~L~---------k~~r~~~l~C~ACGa~ 134 (148)
T 2d74_B 106 ICPVCGSPDTKII---------KRDRFHFLKCEACGAE 134 (148)
T ss_dssp SCSSSCCTTCCCC---------BSSSSBCCCCSSSCCC
T ss_pred ECCCCCCcCcEEE---------EeCCEEEEEecCCCCC
Confidence 4677766654221 1223455678888874
No 119
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=41.75 E-value=1e+02 Score=24.47 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=49.6
Q ss_pred CCCCcEEEEcCCCCCCCcCC-chHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHH
Q psy2399 9 KDVRRIFVTTALPYANGELH-IGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINN 87 (232)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lH-iGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~ 87 (232)
.+++++++.+ |-|+.| ||- -+++..++..| ++|.++ |.| .+++++++.
T Consensus 90 ~~~~~vll~~----v~gd~HdiG~-------~iv~~~l~~~G-----~~Vi~L-G~~--------------vp~e~iv~~ 138 (215)
T 3ezx_A 90 EEAGLAITFV----AEGDIHDIGH-------RLVTTMLGANG-----FQIVDL-GVD--------------VLNENVVEE 138 (215)
T ss_dssp --CCEEEEEE----CTTCCCCHHH-------HHHHHHHHHTS-----CEEEEC-CSS--------------CCHHHHHHH
T ss_pred CCCCeEEEEe----CCCChhHHHH-------HHHHHHHHHCC-----CeEEEc-CCC--------------CCHHHHHHH
Confidence 3456677765 448999 554 45677889999 999876 332 456666554
Q ss_pred HHHHHHHHHhccCCcCCccccCCChhHHHHHHHHHHHHHhhcCC
Q psy2399 88 ISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131 (232)
Q Consensus 88 ~~~~~~~~l~~lgI~~d~~~~t~~~~~~~~v~~~~~~L~~~kG~ 131 (232)
..+ ..-+.+++++ +.+...+...+.+++..|. ++|.
T Consensus 139 ~~~---~~~d~v~l~~----S~l~~~~~~~~~~~i~~l~-~~~~ 174 (215)
T 3ezx_A 139 AAK---HKGEKVLLVG----SALMTTSMLGQKDLMDRLN-EEKL 174 (215)
T ss_dssp HHH---TTTSCEEEEE----ECSSHHHHTHHHHHHHHHH-HTTC
T ss_pred HHH---cCCCEEEEEc----hhcccCcHHHHHHHHHHHH-HcCC
Confidence 432 1223334411 1223346667888888888 7764
No 120
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=41.13 E-value=5.1 Score=26.65 Aligned_cols=23 Identities=17% Similarity=0.559 Sum_probs=12.1
Q ss_pred CCCCCCccccCC-----CcCccCCCCCC
Q psy2399 157 ECPICNAKDQYG-----DFCECCSSIYT 179 (232)
Q Consensus 157 ~cp~c~~~~~~g-----~~Ce~Cg~~~~ 179 (232)
.||.|+.+-.+. -.|..||+.|.
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~YP 37 (68)
T 2hf1_A 10 VCPLCKGPLVFDKSKDELICKGDRLAFP 37 (68)
T ss_dssp BCTTTCCBCEEETTTTEEEETTTTEEEE
T ss_pred ECCCCCCcCeEeCCCCEEEcCCCCcEec
Confidence 477776543221 24666665543
No 121
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=40.90 E-value=5.2 Score=26.61 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=11.6
Q ss_pred CCCCCCccccCC-----CcCccCCCCC
Q psy2399 157 ECPICNAKDQYG-----DFCECCSSIY 178 (232)
Q Consensus 157 ~cp~c~~~~~~g-----~~Ce~Cg~~~ 178 (232)
.||.|+.+-.+. -.|..||+.|
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 10 VCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp BCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred ECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 477776543221 2466666554
No 122
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=40.43 E-value=18 Score=24.31 Aligned_cols=22 Identities=32% Similarity=0.894 Sum_probs=11.6
Q ss_pred CCCCCCcccc----CC-CcCccCCCCC
Q psy2399 157 ECPICNAKDQ----YG-DFCECCSSIY 178 (232)
Q Consensus 157 ~cp~c~~~~~----~g-~~Ce~Cg~~~ 178 (232)
.||.|+.... -| ..|..||..+
T Consensus 28 ~C~fCgk~~vkR~a~GIW~C~~C~~~~ 54 (72)
T 3jyw_9 28 DCSFCGKKTVKRGAAGIWTCSCCKKTV 54 (72)
T ss_dssp CCSSCCSSCBSBCSSSCBCCSSSCCCC
T ss_pred cCCCCCCceeEecCCCeEECCCCCCEE
Confidence 4666654322 12 3477777654
No 123
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=38.91 E-value=6 Score=29.15 Aligned_cols=8 Identities=25% Similarity=0.692 Sum_probs=4.5
Q ss_pred cCccCCCC
Q psy2399 170 FCECCSSI 177 (232)
Q Consensus 170 ~Ce~Cg~~ 177 (232)
.|..||..
T Consensus 80 ~C~~Cgk~ 87 (116)
T 3cc2_Z 80 QCSYCDYK 87 (116)
T ss_dssp EETTTCCE
T ss_pred ECCCCCCE
Confidence 36666654
No 124
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=36.50 E-value=16 Score=25.13 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=22.4
Q ss_pred CccCCCCCCCccccCCcccCCCCccEEEEccceeEecCChhhHHHHHhh
Q psy2399 171 CECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKW 219 (232)
Q Consensus 171 Ce~Cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~L~~~~~~~~l~~~ 219 (232)
|-.|..+.+.+ .|+.||..-....-..+..-+ ..-..|+.+|
T Consensus 26 C~~C~~v~~~d-----~CPnCgs~~~T~~w~G~ViI~--dPe~S~IAk~ 67 (81)
T 3p8b_A 26 CRHCHYITSED-----RCPVCGSRDLSEEWFDLVIIV--DVENSEIAKK 67 (81)
T ss_dssp ETTTCBEESSS-----SCTTTCCCCEESCEEEEEEES--CTTTCHHHHH
T ss_pred HhhCCCccCCC-----CCCCCCCCccCCccceEEEEe--CChHhHHHHH
Confidence 56666655432 466666544333334555556 3444667777
No 125
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=35.50 E-value=37 Score=25.12 Aligned_cols=28 Identities=11% Similarity=0.083 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhhcCCEEecc---cceeecc
Q psy2399 115 IDLVQKIYDTLYNKAKLIINKK---INQFFDP 143 (232)
Q Consensus 115 ~~~v~~~~~~L~~~kG~iy~~~---~~~~~~~ 143 (232)
...|-..++.|. +.|+|.+-. ....|+.
T Consensus 48 ~aTVYR~L~~L~-e~Glv~~~~~~~g~~~Y~~ 78 (139)
T 3mwm_A 48 LTTVYRTLQSLA-DAGEVDVLRTAEGESVYRR 78 (139)
T ss_dssp HHHHHHHHHHHH-HTTSSEEEECTTSCEEEEC
T ss_pred HHHHHHHHHHHH-HCCCEEEEEcCCCceEEEE
Confidence 567788899999 999997743 3455643
No 126
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=35.42 E-value=41 Score=28.72 Aligned_cols=36 Identities=14% Similarity=0.244 Sum_probs=26.3
Q ss_pred CcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecC
Q psy2399 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICA 62 (232)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g 62 (232)
++++|+.+. || ||+++.+ .+++.++.+| ++|.|+..
T Consensus 3 ~~i~i~~GG---Tg----GHi~pal---ala~~L~~~g-----~~V~~vg~ 38 (365)
T 3s2u_A 3 GNVLIMAGG---TG----GHVFPAL---ACAREFQARG-----YAVHWLGT 38 (365)
T ss_dssp CEEEEECCS---SH----HHHHHHH---HHHHHHHHTT-----CEEEEEEC
T ss_pred CcEEEEcCC---CH----HHHHHHH---HHHHHHHhCC-----CEEEEEEC
Confidence 567776652 45 9998755 4677778899 99999853
No 127
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=34.68 E-value=7 Score=22.50 Aligned_cols=10 Identities=10% Similarity=-0.024 Sum_probs=5.9
Q ss_pred CCcccCCCCc
Q psy2399 185 NPYSILSGTK 194 (232)
Q Consensus 185 ~~~~~~~g~~ 194 (232)
--+|..||+.
T Consensus 21 ~l~C~aCG~~ 30 (36)
T 1k81_A 21 LLKCMACGAI 30 (36)
T ss_dssp EEEEETTTEE
T ss_pred EEEhhcCCCc
Confidence 3466667654
No 128
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=34.47 E-value=10 Score=29.72 Aligned_cols=30 Identities=10% Similarity=0.029 Sum_probs=20.0
Q ss_pred CccCCCCCCCccccCCcccCCCCccEEEEccc
Q psy2399 171 CECCSSIYTPTKLINPYSILSGTKPIIKSSKH 202 (232)
Q Consensus 171 Ce~Cg~~~~~~~l~~~~~~~~g~~~~~~~~~~ 202 (232)
|..||..+.+.. ...+|+.||. .|.|+...
T Consensus 143 ~~~~g~~m~~~~-~~~~cp~~g~-~e~RKva~ 172 (179)
T 3m7n_A 143 CSNCKTEMVREG-DILKCPECGR-VEKRKIST 172 (179)
T ss_dssp CTTTCCBCEECS-SSEECSSSCC-EECCCBCT
T ss_pred ccccCCceEECC-CEEECCCCCC-EEEEeccc
Confidence 667777776666 6778888874 44455443
No 129
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=34.34 E-value=6.8 Score=26.17 Aligned_cols=23 Identities=17% Similarity=0.660 Sum_probs=12.7
Q ss_pred CCCCCCccccCC-----CcCccCCCCCC
Q psy2399 157 ECPICNAKDQYG-----DFCECCSSIYT 179 (232)
Q Consensus 157 ~cp~c~~~~~~g-----~~Ce~Cg~~~~ 179 (232)
.||.|+.+-.+. -.|..||+.|.
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~YP 37 (70)
T 2js4_A 10 VCPVCKGRLEFQRAQAELVCNADRLAFP 37 (70)
T ss_dssp BCTTTCCBEEEETTTTEEEETTTTEEEE
T ss_pred ECCCCCCcCEEeCCCCEEEcCCCCceec
Confidence 477776643221 24777776553
No 130
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=34.19 E-value=11 Score=25.29 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=21.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2399 67 GAAIMIAAEKAGMTPKEFINNISSNR 92 (232)
Q Consensus 67 G~~i~~~a~~~g~~~~e~~~~~~~~~ 92 (232)
+.+++.++...|+++.++.+...+.+
T Consensus 38 ~~tLeeA~~~hgiD~d~ll~eLn~~i 63 (76)
T 2k53_A 38 GESIEDACAVHGIDADKLVKELNEYF 63 (76)
T ss_dssp CSBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHcCCCHHHHHHHHHHHH
Confidence 46789999999999998887776544
No 131
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=33.36 E-value=10 Score=25.32 Aligned_cols=27 Identities=7% Similarity=0.254 Sum_probs=21.6
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy2399 67 GAAIMIAAEKAGMTPKEFINNISSNRK 93 (232)
Q Consensus 67 G~~i~~~a~~~g~~~~e~~~~~~~~~~ 93 (232)
+..++.++...|+++.++.+...+.+.
T Consensus 40 ~~tL~~Aa~~~gid~~~ll~~Ln~~~~ 66 (73)
T 2k5e_A 40 NESLEQGANAHGLNVEDILRDLNALAL 66 (73)
T ss_dssp GSBHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 467889999999999998887765543
No 132
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=33.25 E-value=51 Score=22.67 Aligned_cols=69 Identities=6% Similarity=-0.042 Sum_probs=34.9
Q ss_pred CCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHH-------HHHHH
Q psy2399 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI-------SSNRK 93 (232)
Q Consensus 21 P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~-------~~~~~ 93 (232)
|+|.+.-|+---....+++-|.++...+| ......|++.|+++..+..-- .+.+.
T Consensus 13 ~~~~~~~~M~~~~~~~ig~~lr~~R~~~g------------------ltq~elA~~~gis~~~is~iE~G~~~ps~~~l~ 74 (99)
T 3g5g_A 13 GLVPRGSHMESFLLSKVSFVIKKIRLEKG------------------MTQEDLAYKSNLDRTYISGIERNSRNLTIKSLE 74 (99)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHTT------------------CCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHH
T ss_pred CCCCccccccHHHHHHHHHHHHHHHHHcC------------------CCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHH
Confidence 45556666543344456666666655555 223456666777665543321 25667
Q ss_pred HHHhccCCcCCccc
Q psy2399 94 KYLDGFYIKFDNWY 107 (232)
Q Consensus 94 ~~l~~lgI~~d~~~ 107 (232)
+..+.||++++.+.
T Consensus 75 ~ia~~l~v~~~~l~ 88 (99)
T 3g5g_A 75 LIMKGLEVSDVVFF 88 (99)
T ss_dssp HHHHHTTCCHHHHH
T ss_pred HHHHHHCcCHHHHh
Confidence 77788888776654
No 133
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=32.53 E-value=18 Score=28.46 Aligned_cols=19 Identities=0% Similarity=-0.071 Sum_probs=14.4
Q ss_pred cceeeccCCCcccccceec
Q psy2399 137 INQFFDPIKNIFLPDRYIK 155 (232)
Q Consensus 137 ~~~~~~~~~~~~l~~~~v~ 155 (232)
.-.|||.+|+..|.+.+..
T Consensus 120 ~~~wyc~~c~~~~~e~~f~ 138 (174)
T 1yfu_A 120 GFEWYCDACGHLVHRVEVQ 138 (174)
T ss_dssp EEEEECTTTCCEEEEEEEC
T ss_pred ceEEEcCCCCCEEEEEEEE
Confidence 4569999998888776653
No 134
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=32.50 E-value=9.3 Score=25.29 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=12.9
Q ss_pred CCCCCCccccCC-----CcCccCCCCCC
Q psy2399 157 ECPICNAKDQYG-----DFCECCSSIYT 179 (232)
Q Consensus 157 ~cp~c~~~~~~g-----~~Ce~Cg~~~~ 179 (232)
.||.|+.+-.+. -.|..||+.|.
T Consensus 12 ~CP~ck~~L~~~~~~g~LvC~~c~~~YP 39 (67)
T 2jny_A 12 ACPKDKGPLRYLESEQLLVNERLNLAYR 39 (67)
T ss_dssp BCTTTCCBCEEETTTTEEEETTTTEEEE
T ss_pred CCCCCCCcCeEeCCCCEEEcCCCCcccc
Confidence 477776653322 24777776553
No 135
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=32.08 E-value=25 Score=27.69 Aligned_cols=19 Identities=0% Similarity=0.016 Sum_probs=14.3
Q ss_pred cceeeccCCCcccccceec
Q psy2399 137 INQFFDPIKNIFLPDRYIK 155 (232)
Q Consensus 137 ~~~~~~~~~~~~l~~~~v~ 155 (232)
.-.|||.+|+..|.+.+..
T Consensus 122 ~~~wyc~~c~~~~~e~~f~ 140 (176)
T 1zvf_A 122 KIRWYCSHCRQVVHESELQ 140 (176)
T ss_dssp EEEEECTTTCCEEEEEECC
T ss_pred ceEEEcCCCCCEEEEEEEE
Confidence 4569999998888776553
No 136
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=31.98 E-value=28 Score=27.94 Aligned_cols=27 Identities=22% Similarity=0.527 Sum_probs=18.0
Q ss_pred ccCCCCCCcc----ccCCCcCccCCCCCCCc
Q psy2399 155 KGECPICNAK----DQYGDFCECCSSIYTPT 181 (232)
Q Consensus 155 ~g~cp~c~~~----~~~g~~Ce~Cg~~~~~~ 181 (232)
...|+.|+.. .....+|..|+.+..+.
T Consensus 10 ~~~Cw~C~~~~~~~~~~~~fC~~c~~~q~~~ 40 (207)
T 3bvo_A 10 YPRCWNCGGPWGPGREDRFFCPQCRALQAPD 40 (207)
T ss_dssp -CBCSSSCCBCCSSCSCCCBCTTTCCBCCCC
T ss_pred CCCCCCCCCCcccccccccccccccccCCCC
Confidence 4578888875 33556788888766554
No 137
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=31.09 E-value=54 Score=24.49 Aligned_cols=28 Identities=11% Similarity=0.272 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhhcCCEEecc---cceeecc
Q psy2399 115 IDLVQKIYDTLYNKAKLIINKK---INQFFDP 143 (232)
Q Consensus 115 ~~~v~~~~~~L~~~kG~iy~~~---~~~~~~~ 143 (232)
...|-..+..|. +.|+|.+-. ....|+.
T Consensus 52 ~aTVYR~L~~L~-e~Glv~~~~~~~~~~~Y~~ 82 (150)
T 2w57_A 52 LATVYRVLNQFD-DAGIVTRHHFEGGKSVFEL 82 (150)
T ss_dssp HHHHHHHHHHHH-HTTSEEEEECGGGCEEEEE
T ss_pred HHHHHHHHHHHH-HCCcEEEEEeCCCceEEEe
Confidence 456778889999 999997743 3456653
No 138
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=31.02 E-value=16 Score=25.29 Aligned_cols=57 Identities=9% Similarity=-0.002 Sum_probs=34.2
Q ss_pred eccCCCCCCccccCCCcCccCCCCCCCccccCCcccCCCCccEEEEccceeEecCChhhHHHHHhh
Q psy2399 154 IKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKW 219 (232)
Q Consensus 154 v~g~cp~c~~~~~~g~~Ce~Cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~L~~~~~~~~l~~~ 219 (232)
-...||.|+... +..|-.- ....+..-.|..||..-+. +...+.=++ .-|.+|+-..
T Consensus 22 t~F~CPfCnh~~-----sV~vkid-k~~~~g~l~C~~Cg~~~~~-~i~~L~epi--DVYs~WiDac 78 (85)
T 1wii_A 22 TQFTCPFCNHEK-----SCDVKMD-RARNTGVISCTVCLEEFQT-PITYLSEPV--DVYSDWIDAC 78 (85)
T ss_dssp SCCCCTTTCCSS-----CEEEEEE-TTTTEEEEEESSSCCEEEE-ECCSSCCTT--HHHHHHHHHH
T ss_pred CeEcCCCCCCCC-----eEEEEEE-ccCCEEEEEcccCCCeEEe-ccCccCcch--hhHHHHHHHH
Confidence 345788887753 1122111 1112334578999988776 566666666 6788887766
No 139
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=30.90 E-value=16 Score=27.42 Aligned_cols=24 Identities=33% Similarity=0.902 Sum_probs=16.0
Q ss_pred cCCCCCCccccCCC----cCccCCCCCC
Q psy2399 156 GECPICNAKDQYGD----FCECCSSIYT 179 (232)
Q Consensus 156 g~cp~c~~~~~~g~----~Ce~Cg~~~~ 179 (232)
-.||.|.++-.|.+ .|+.|+.-.+
T Consensus 28 P~CP~C~seytYeDg~l~vCPeC~hEW~ 55 (138)
T 2akl_A 28 PPCPQCNSEYTYEDGALLVCPECAHEWS 55 (138)
T ss_dssp CCCTTTCCCCCEECSSSEEETTTTEEEC
T ss_pred CCCCCCCCcceEecCCeEECCccccccC
Confidence 36888887666553 4777776554
No 140
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=30.74 E-value=15 Score=30.65 Aligned_cols=12 Identities=33% Similarity=0.888 Sum_probs=6.9
Q ss_pred CcCccCCCCCCC
Q psy2399 169 DFCECCSSIYTP 180 (232)
Q Consensus 169 ~~Ce~Cg~~~~~ 180 (232)
..|..||...-|
T Consensus 126 ~~C~~C~~~~yp 137 (269)
T 1vk6_A 126 MLCSHCRERYYP 137 (269)
T ss_dssp EEESSSSCEECC
T ss_pred eeCCCCCCEecC
Confidence 357777765443
No 141
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=30.67 E-value=11 Score=31.17 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=14.7
Q ss_pred cCccCCCCCCCcccc-------CCcccCCCC
Q psy2399 170 FCECCSSIYTPTKLI-------NPYSILSGT 193 (232)
Q Consensus 170 ~Ce~Cg~~~~~~~l~-------~~~~~~~g~ 193 (232)
+|..|+..++.+++. -|+|+.||.
T Consensus 125 ~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg 155 (253)
T 1ma3_A 125 DCLDCHETYDWSEFVEDFNKGEIPRCRKCGS 155 (253)
T ss_dssp EETTTCCEEEGGGTHHHHHTTCCCCCTTTCC
T ss_pred eeCCCCCcCcHHHHHHHhccCCCCCCCCCCC
Confidence 366666655433321 389999987
No 142
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.17 E-value=49 Score=24.51 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhcCCEEecc---cceeec
Q psy2399 115 IDLVQKIYDTLYNKAKLIINKK---INQFFD 142 (232)
Q Consensus 115 ~~~v~~~~~~L~~~kG~iy~~~---~~~~~~ 142 (232)
...|-..++.|. +.|+|.+-. ....|+
T Consensus 56 ~aTVYR~L~~L~-e~Glv~~~~~~~~~~~Y~ 85 (145)
T 2fe3_A 56 VATVYNNLRVFR-ESGLVKELTYGDASSRFD 85 (145)
T ss_dssp HHHHHHHHHHHH-HTTSEEEECCTTSCCEEE
T ss_pred hhhHHHHHHHHH-HCCCEEEEeeCCCceEEE
Confidence 466778899999 999998743 344564
No 143
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=29.84 E-value=58 Score=23.61 Aligned_cols=27 Identities=7% Similarity=0.153 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhcCCEEecc---cceeec
Q psy2399 115 IDLVQKIYDTLYNKAKLIINKK---INQFFD 142 (232)
Q Consensus 115 ~~~v~~~~~~L~~~kG~iy~~~---~~~~~~ 142 (232)
...|-..+..|. +.|+|.+-. ....|+
T Consensus 45 ~~TVYR~L~~L~-e~Glv~~~~~~~~~~~y~ 74 (131)
T 2o03_A 45 LTTVYRTLQSMA-SSGLVDTLHTDTGESVYR 74 (131)
T ss_dssp HHHHHHHHHHHH-TTTSEEEEECTTSCEEEE
T ss_pred HhhHHHHHHHHH-HCCCEEEEEeCCCceEEE
Confidence 466778899999 999997643 345564
No 144
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=29.44 E-value=49 Score=24.18 Aligned_cols=21 Identities=14% Similarity=0.331 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhhcCCEEecc
Q psy2399 115 IDLVQKIYDTLYNKAKLIINKK 136 (232)
Q Consensus 115 ~~~v~~~~~~L~~~kG~iy~~~ 136 (232)
...|-..++.|. +.|+|.+-.
T Consensus 53 ~aTVYR~L~~L~-e~Glv~~~~ 73 (136)
T 1mzb_A 53 LATVYRVLTQFE-AAGLVVRHN 73 (136)
T ss_dssp HHHHHHHHHHHH-HHTSEEEEC
T ss_pred HHHHHHHHHHHH-HCCcEEEEE
Confidence 456778889999 999998743
No 145
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Probab=28.97 E-value=62 Score=27.20 Aligned_cols=47 Identities=11% Similarity=0.230 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhccCCcC-Cccc--cCCChhHHHHHHHHHHHHHhhcCCEE
Q psy2399 86 NNISSNRKKYLDGFYIKF-DNWY--STDSIENIDLVQKIYDTLYNKAKLII 133 (232)
Q Consensus 86 ~~~~~~~~~~l~~lgI~~-d~~~--~t~~~~~~~~v~~~~~~L~~~kG~iy 133 (232)
+.+.+.+.+.|++||+++ |.+. +.......+.+.+.+.+|. ++|+|-
T Consensus 100 ~~i~~~~e~SL~rLg~dyiDl~~lH~p~~~~~~~e~~~al~~l~-~~Gkir 149 (327)
T 3eau_A 100 KHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVI-NQGMAM 149 (327)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEESSCCTTSCHHHHHHHHHHHH-HTTSEE
T ss_pred HHHHHHHHHHHHHhCCCccceEEEeCCCCCCCHHHHHHHHHHHH-HcCCee
Confidence 566778899999999864 5433 1211123456778999999 999984
No 146
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=28.70 E-value=64 Score=20.21 Aligned_cols=42 Identities=2% Similarity=-0.059 Sum_probs=25.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHH-------HHHHHHHHhccCCcCCccccC
Q psy2399 68 AAIMIAAEKAGMTPKEFINNI-------SSNRKKYLDGFYIKFDNWYST 109 (232)
Q Consensus 68 ~~i~~~a~~~g~~~~e~~~~~-------~~~~~~~l~~lgI~~d~~~~t 109 (232)
......|++.|+++..+..-. .+.+.+..+.||++++.+...
T Consensus 22 lsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~v~~~~l~~~ 70 (73)
T 3omt_A 22 KTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVDVRELIVS 70 (73)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGGBCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHhcC
Confidence 334555666666655443322 256667778888888776543
No 147
>1gve_A Aflatoxin B1 aldehyde reductase member 3; oxidoreductase, aldo-keto reductase, succinic semialdehyde oxidoreductase, AKR7 family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2clp_A* 2c91_A*
Probab=28.60 E-value=73 Score=26.80 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhccCCcC-Ccccc--CCChhHHHHHHHHHHHHHhhcCCEE
Q psy2399 85 INNISSNRKKYLDGFYIKF-DNWYS--TDSIENIDLVQKIYDTLYNKAKLII 133 (232)
Q Consensus 85 ~~~~~~~~~~~l~~lgI~~-d~~~~--t~~~~~~~~v~~~~~~L~~~kG~iy 133 (232)
.+.+.+.+.+.|++||+++ |.+.- .......+.+.+.+.+|. ++|+|-
T Consensus 84 ~~~i~~~~~~SL~rL~~dyiDl~~lH~p~~~~~~~e~~~al~~l~-~~Gkir 134 (327)
T 1gve_A 84 PADVRFQLETSLKRLQCPRVDLFYLHFPDHGTPIEETLQACHQLH-QEGKFV 134 (327)
T ss_dssp HHHHHHHHHHHHHHTTCSCEEEEEECSCCTTSCHHHHHHHHHHHH-HTTSEE
T ss_pred HHHHHHHHHHHHHHHCCCeEeEEEecCCCCCCCHHHHHHHHHHHH-hCCcee
Confidence 3566788899999999964 54431 111122456778999999 999984
No 148
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=28.19 E-value=8.1 Score=23.19 Aligned_cols=16 Identities=25% Similarity=0.632 Sum_probs=11.7
Q ss_pred cCccCCCCCCCccccC
Q psy2399 170 FCECCSSIYTPTKLIN 185 (232)
Q Consensus 170 ~Ce~Cg~~~~~~~l~~ 185 (232)
.|.+||++..-+.+++
T Consensus 19 vC~~CgkPi~lsAIvd 34 (44)
T 2lo3_A 19 VCEKCGKPLALTAIVD 34 (44)
T ss_dssp ECTTTCCEEETTTHHH
T ss_pred hhcccCCcchHHHHHH
Confidence 4999999887665543
No 149
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Probab=28.04 E-value=65 Score=27.58 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhccCCcC-Cccc--cCCChhHHHHHHHHHHHHHhhcCCEE
Q psy2399 85 INNISSNRKKYLDGFYIKF-DNWY--STDSIENIDLVQKIYDTLYNKAKLII 133 (232)
Q Consensus 85 ~~~~~~~~~~~l~~lgI~~-d~~~--~t~~~~~~~~v~~~~~~L~~~kG~iy 133 (232)
.+.+.+.+.+.|++||+++ |.+. +.....-.+.+.+.+.+|. +.|+|-
T Consensus 134 ~~~i~~~~e~SL~rLg~dyiDl~~lH~p~~~~~~~e~~~aL~~l~-~~Gkir 184 (353)
T 3erp_A 134 RKYLIASLDQSLKRMGLEYVDIFYHHRPDPETPLKETMKALDHLV-RHGKAL 184 (353)
T ss_dssp HHHHHHHHHHHHHHHTCSCEEEEEECSCCTTSCHHHHHHHHHHHH-HTTSEE
T ss_pred HHHHHHHHHHHHHHhCCCeEeEEEecCCCCCCCHHHHHHHHHHHH-HCCCcc
Confidence 3567788899999999964 5433 1111122456778999999 999984
No 150
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=27.55 E-value=16 Score=29.97 Aligned_cols=10 Identities=20% Similarity=0.557 Sum_probs=7.8
Q ss_pred ccCCCCCCcc
Q psy2399 155 KGECPICNAK 164 (232)
Q Consensus 155 ~g~cp~c~~~ 164 (232)
.+.||.|+..
T Consensus 14 ~~~CP~Cg~~ 23 (255)
T 1nui_A 14 HIPCDNCGSS 23 (255)
T ss_dssp EECCSSSCCS
T ss_pred CCcCCCCCCC
Confidence 6788888874
No 151
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating, potassium channel, KV1.2, gating charges, no analysis, ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Probab=27.39 E-value=67 Score=27.62 Aligned_cols=47 Identities=11% Similarity=0.230 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhccCCcC-Cccc--cCCChhHHHHHHHHHHHHHhhcCCEE
Q psy2399 86 NNISSNRKKYLDGFYIKF-DNWY--STDSIENIDLVQKIYDTLYNKAKLII 133 (232)
Q Consensus 86 ~~~~~~~~~~l~~lgI~~-d~~~--~t~~~~~~~~v~~~~~~L~~~kG~iy 133 (232)
+.+.+.+.+.|++||+++ |.+. +.......+.+...+.+|. +.|+|-
T Consensus 134 ~~i~~~~e~SL~rLg~dyiDl~~lH~pd~~~~~~e~~~al~~l~-~~Gkir 183 (367)
T 3lut_A 134 KHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVI-NQGMAM 183 (367)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEESSCCTTSCHHHHHHHHHHHH-HTTSEE
T ss_pred HHHHHHHHHHHHHhCCCccceEEecCCCCCCCHHHHHHHHHHHH-HcCCee
Confidence 567788899999999964 5433 1111123456788999999 999984
No 152
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=27.31 E-value=1e+02 Score=25.21 Aligned_cols=23 Identities=9% Similarity=-0.012 Sum_probs=16.4
Q ss_pred CCcccCCCCccEEEEccceeEec
Q psy2399 185 NPYSILSGTKPIIKSSKHFFFKL 207 (232)
Q Consensus 185 ~~~~~~~g~~~~~~~~~~~f~~L 207 (232)
.-.|..|+..-..+.++.+-+++
T Consensus 96 ~~~C~~C~G~g~~~~~~~l~V~I 118 (248)
T 1nlt_A 96 KDRCKSCNGKKVENERKILEVHV 118 (248)
T ss_dssp TSBCSSSTTSCEEEEEEEEEEEE
T ss_pred CCCCcccCCCceEeeeEEEEEEE
Confidence 45788888877777666666665
No 153
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=26.92 E-value=1.9e+02 Score=22.36 Aligned_cols=80 Identities=21% Similarity=0.258 Sum_probs=47.1
Q ss_pred CCCcEEEEcCCCCCCCcCC-chHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHHHHHHHcCCCHHHHHHHH
Q psy2399 10 DVRRIFVTTALPYANGELH-IGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (232)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lH-iGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~~~a~~~g~~~~e~~~~~ 88 (232)
.++++++.+ +-|+.| || ..+++..++..| ++|.++- .+ .+++++++..
T Consensus 87 ~~~~vll~~----~~gd~H~iG-------~~~va~~l~~~G-----~~v~~LG-~~--------------vp~~~l~~~~ 135 (210)
T 1y80_A 87 SVGKIVLGT----VKGDLHDIG-------KNLVAMMLESGG-----FTVYNLG-VD--------------IEPGKFVEAV 135 (210)
T ss_dssp CCCEEEEEE----BTTCCCCHH-------HHHHHHHHHHTT-----CEEEECC-SS--------------BCHHHHHHHH
T ss_pred CCCEEEEEe----CCCcccHHH-------HHHHHHHHHHCC-----CEEEECC-CC--------------CCHHHHHHHH
Confidence 345666664 348888 55 457778889999 9998763 32 4555555444
Q ss_pred HHHHHHHHhccCCcCCccccCCChhHHHHHHHHHHHHHhhcC
Q psy2399 89 SSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAK 130 (232)
Q Consensus 89 ~~~~~~~l~~lgI~~d~~~~t~~~~~~~~v~~~~~~L~~~kG 130 (232)
.+ ..-+.++++.. ...+...+.++++.|. ++|
T Consensus 136 ~~---~~~d~v~lS~~------~~~~~~~~~~~i~~l~-~~~ 167 (210)
T 1y80_A 136 KK---YQPDIVGMSAL------LTTTMMNMKSTIDALI-AAG 167 (210)
T ss_dssp HH---HCCSEEEEECC------SGGGTHHHHHHHHHHH-HTT
T ss_pred HH---cCCCEEEEecc------ccccHHHHHHHHHHHH-hcC
Confidence 31 12234444321 1234556777778887 765
No 154
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A*
Probab=26.92 E-value=70 Score=27.17 Aligned_cols=48 Identities=10% Similarity=0.171 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhccCCcC-Ccccc--CCChhHHHHHHHHHHHHHhhcCCEE
Q psy2399 85 INNISSNRKKYLDGFYIKF-DNWYS--TDSIENIDLVQKIYDTLYNKAKLII 133 (232)
Q Consensus 85 ~~~~~~~~~~~l~~lgI~~-d~~~~--t~~~~~~~~v~~~~~~L~~~kG~iy 133 (232)
.+.+.+.+.+.|++||+++ |.+.- .......+.+...+.+|. ++|+|-
T Consensus 113 ~~~i~~~~e~SL~rL~~dyiDl~~lH~p~~~~~~~e~~~al~~l~-~~Gkir 163 (346)
T 3n6q_A 113 RKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAV-QSGKAL 163 (346)
T ss_dssp HHHHHHHHHHHHHHHTCSCEEEEEECSCCTTSCHHHHHHHHHHHH-HTTSEE
T ss_pred HHHHHHHHHHHHHHhCCCcEeEEEEeCCCCCCCHHHHHHHHHHHH-HcCCee
Confidence 3466788889999999964 54331 111122456788999999 999984
No 155
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=26.86 E-value=11 Score=31.97 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=18.9
Q ss_pred cCccCCCCCCCccc----------cCCcccCCCCccEEEEcccee
Q psy2399 170 FCECCSSIYTPTKL----------INPYSILSGTKPIIKSSKHFF 204 (232)
Q Consensus 170 ~Ce~Cg~~~~~~~l----------~~~~~~~~g~~~~~~~~~~~f 204 (232)
+|..|++.++.+++ .-|+|+.||..+ |+---||
T Consensus 138 ~C~~C~~~~~~~~~~~~~~~~~~~~~P~C~~Cgg~l--rP~vv~F 180 (289)
T 1q1a_A 138 HCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELV--KPAIVFF 180 (289)
T ss_dssp EETTTCCEECHHHHHHHHTCSSCCSCCBCTTTCCBE--EEEECCB
T ss_pred EECCCCCCCcHHHHHHHHhhccCCCCccCCCCCCEE--CCCEEEc
Confidence 46666665543221 238999999754 4443444
No 156
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=26.77 E-value=36 Score=25.43 Aligned_cols=12 Identities=25% Similarity=-0.064 Sum_probs=6.2
Q ss_pred ceeeccCCCccc
Q psy2399 138 NQFFDPIKNIFL 149 (232)
Q Consensus 138 ~~~~~~~~~~~l 149 (232)
..-|||.|+..|
T Consensus 23 ~~~FCPeCgNmL 34 (133)
T 3qt1_I 23 TFRFCRDCNNML 34 (133)
T ss_dssp CCCBCTTTCCBC
T ss_pred CCeeCCCCCCEe
Confidence 345555555554
No 157
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=26.63 E-value=44 Score=27.95 Aligned_cols=20 Identities=15% Similarity=-0.280 Sum_probs=13.3
Q ss_pred HHHhccCCcCCccccCCChh
Q psy2399 94 KYLDGFYIKFDNWYSTDSIE 113 (232)
Q Consensus 94 ~~l~~lgI~~d~~~~t~~~~ 113 (232)
+.|=+.||++..-..+.+..
T Consensus 178 EiLf~a~I~P~~~~~~Ls~~ 197 (273)
T 3u6p_A 178 ESLFRAGILPGRPAASLSSK 197 (273)
T ss_dssp HHHHHHTCCTTSBGGGCCHH
T ss_pred HHHHHcCCCccCccccCCHH
Confidence 45567788887777666543
No 158
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=26.48 E-value=35 Score=29.42 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=14.3
Q ss_pred cCccCCCC----CCCccccCCcccCCCCcc
Q psy2399 170 FCECCSSI----YTPTKLINPYSILSGTKP 195 (232)
Q Consensus 170 ~Ce~Cg~~----~~~~~l~~~~~~~~g~~~ 195 (232)
.|..||.. .....--+.+|..||..+
T Consensus 23 ~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 23 TCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp CCSTTCCSCCCCCCCSSSCSCCCSSSCCCC
T ss_pred cCcCCCCCCCceEEECCCCCEecCCCCeEc
Confidence 47777763 111222355777777654
No 159
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=26.24 E-value=17 Score=28.57 Aligned_cols=9 Identities=33% Similarity=1.029 Sum_probs=4.7
Q ss_pred CCCCCCccc
Q psy2399 157 ECPICNAKD 165 (232)
Q Consensus 157 ~cp~c~~~~ 165 (232)
.|+.|+.++
T Consensus 98 lC~~C~sPd 106 (170)
T 2g2k_A 98 LCPECENPE 106 (170)
T ss_dssp SCTTTSSSC
T ss_pred ECCCCCCCc
Confidence 355555544
No 160
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=25.83 E-value=21 Score=21.96 Aligned_cols=20 Identities=25% Similarity=0.766 Sum_probs=11.4
Q ss_pred cCCCCCCccccCCCcCccCC
Q psy2399 156 GECPICNAKDQYGDFCECCS 175 (232)
Q Consensus 156 g~cp~c~~~~~~g~~Ce~Cg 175 (232)
..|-.|+...-.|..|..|+
T Consensus 15 t~C~~C~k~i~~G~kC~~Ck 34 (49)
T 1kbe_A 15 QVCNVCQKSMIFGVKCKHCR 34 (49)
T ss_dssp CCCSSSCCSSCCEEEETTTT
T ss_pred cCccccCceeECcCCCCCCC
Confidence 45666666555555555555
No 161
>2bp1_A Aflatoxin B1 aldehyde reductase member 2; oxidoreductase, aldo-keto reductase family 7, SSA reductase, barrel; HET: FLC NDP; 2.4A {Homo sapiens}
Probab=25.80 E-value=75 Score=27.29 Aligned_cols=48 Identities=13% Similarity=0.132 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhccCCcC-Ccccc--CCChhHHHHHHHHHHHHHhhcCCEE
Q psy2399 85 INNISSNRKKYLDGFYIKF-DNWYS--TDSIENIDLVQKIYDTLYNKAKLII 133 (232)
Q Consensus 85 ~~~~~~~~~~~l~~lgI~~-d~~~~--t~~~~~~~~v~~~~~~L~~~kG~iy 133 (232)
.+.+.+.+.+.|++||+++ |.+.- .......+.+.+.+.+|. +.|+|-
T Consensus 117 ~~~i~~~~e~SL~rLg~dyiDl~~lH~p~~~~~~~e~~~aL~~l~-~~Gkir 167 (360)
T 2bp1_A 117 PDSVRSQLETSLKRLQCPQVDLFYLHAPDHGTPVEETLHACQRLH-QEGKFV 167 (360)
T ss_dssp HHHHHHHHHHHHHHHTCSCEEEEEECSCCTTSCHHHHHHHHHHHH-HTTSEE
T ss_pred HHHHHHHHHHHHHHhCCCeEeEEEecCCCCCCCHHHHHHHHHHHH-HCCCcc
Confidence 3567788899999999964 54431 111122456778999999 999984
No 162
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Probab=25.77 E-value=2.2e+02 Score=21.53 Aligned_cols=61 Identities=15% Similarity=0.218 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHHHHhccCC------cCCccccCC-ChhH-HHHHHHHHHHHHhhcCCEEecccceee
Q psy2399 80 TPKEFINNISSNRKKYLDGFYI------KFDNWYSTD-SIEN-IDLVQKIYDTLYNKAKLIINKKINQFF 141 (232)
Q Consensus 80 ~~~e~~~~~~~~~~~~l~~lgI------~~d~~~~t~-~~~~-~~~v~~~~~~L~~~kG~iy~~~~~~~~ 141 (232)
+|+.++++..+.+++.+.+++. .|.+..... +|.. .+....+-.+|. ++|+=..+.--+||
T Consensus 52 ~~~~vv~~av~eI~~~a~kv~~~~ivlYPyAHLSs~La~P~~A~~iL~~le~~L~-~~g~eV~raPFGwy 120 (143)
T 2hl0_A 52 NPEEVSLKAIEEISKVAEQVKAENVFVYPFAHLSSELAKPSVAMDILNRVYQGLK-ERGFNVGKAPFGYY 120 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCEEEEEECGGGCSSBCCHHHHHHHHHHHHHHHH-HTTCEEEECCSSEE
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCccCChHHHHHHHHHHHHHHH-hCCCeEEEeCCccc
Confidence 5788999999999999999997 455554443 4443 455666777888 89986667778888
No 163
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=25.70 E-value=25 Score=28.91 Aligned_cols=11 Identities=18% Similarity=0.018 Sum_probs=8.5
Q ss_pred CCcccCCCCcc
Q psy2399 185 NPYSILSGTKP 195 (232)
Q Consensus 185 ~~~~~~~g~~~ 195 (232)
-|+|+.||..+
T Consensus 142 ~p~C~~Cgg~l 152 (249)
T 1m2k_A 142 LPKCDKCGSLL 152 (249)
T ss_dssp CCBCSSSSSBE
T ss_pred CCCCCCCCCCc
Confidence 48999998754
No 164
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=25.52 E-value=31 Score=32.44 Aligned_cols=20 Identities=25% Similarity=0.803 Sum_probs=1.1
Q ss_pred CCCCCCccccC-----CCcCccCCC
Q psy2399 157 ECPICNAKDQY-----GDFCECCSS 176 (232)
Q Consensus 157 ~cp~c~~~~~~-----g~~Ce~Cg~ 176 (232)
.||.||..... ++.|+.||.
T Consensus 542 ~C~~CGy~~~~~~~~~~~~CP~Cg~ 566 (605)
T 1h7b_A 542 KCFTCGSTHEMTPTENGFVCSICGE 566 (605)
T ss_dssp ET-----------------------
T ss_pred cCcccCCcCccCccccCCcCCCCCC
Confidence 45555543321 244555554
No 165
>1pz1_A GSP69, general stress protein 69; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; HET: NAP; 2.20A {Bacillus subtilis} SCOP: c.1.7.1
Probab=25.42 E-value=88 Score=26.45 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhccCCcC-Ccccc--CCChhHHHHHHHHHHHHHhhcCCE
Q psy2399 85 INNISSNRKKYLDGFYIKF-DNWYS--TDSIENIDLVQKIYDTLYNKAKLI 132 (232)
Q Consensus 85 ~~~~~~~~~~~l~~lgI~~-d~~~~--t~~~~~~~~v~~~~~~L~~~kG~i 132 (232)
.+.+.+.+.+.|++||+++ |.+.- .....-.+.+.+.+.+|. ++|+|
T Consensus 100 ~~~i~~~~~~SL~rLg~dyiDl~~lH~p~~~~~~~e~~~al~~l~-~~Gki 149 (333)
T 1pz1_A 100 RARIVEEVENSLKRLQTDYIDLYQVHWPDPLVPIEETAEVMKELY-DAGKI 149 (333)
T ss_dssp HHHHHHHHHHHHHHTTSSCBSEEEECSCCTTSCHHHHHHHHHHHH-HTTSB
T ss_pred HHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCHHHHHHHHHHHH-HCCcC
Confidence 3566778899999999964 54431 111112456778999999 99987
No 166
>1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC; 1.25A {Bacillus halodurans} PDB: 1ynq_A*
Probab=25.39 E-value=70 Score=26.97 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhccCCcC-Cccc--cCCChhHHHHHHHHHHHHHhhcCCEE
Q psy2399 85 INNISSNRKKYLDGFYIKF-DNWY--STDSIENIDLVQKIYDTLYNKAKLII 133 (232)
Q Consensus 85 ~~~~~~~~~~~l~~lgI~~-d~~~--~t~~~~~~~~v~~~~~~L~~~kG~iy 133 (232)
.+.+.+.+.+.|++||+++ |.+. +.......+.+.+.+.+|. ++|+|-
T Consensus 114 ~~~v~~~~e~SL~rL~~dyiDl~llH~p~~~~~~~e~~~al~~l~-~~Gkir 164 (317)
T 1ynp_A 114 KAYIKEAVKDSLRRLQTDYIDLYQLHGGTIDDPIDETIEAFEELK-QEGVIR 164 (317)
T ss_dssp HHHHHHHHHHHHHHHTCSCEEEEEECSCCTTSCHHHHHHHHHHHH-HHTSEE
T ss_pred HHHHHHHHHHHHHHHCCCcEeEEEecCCCCCCChHHHHHHHHHHH-hCCceE
Confidence 3566788999999999964 5433 1111122356777999999 999984
No 167
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.38 E-value=22 Score=27.49 Aligned_cols=16 Identities=13% Similarity=0.040 Sum_probs=9.3
Q ss_pred HHHHHHHcCCCHHHHH
Q psy2399 70 IMIAAEKAGMTPKEFI 85 (232)
Q Consensus 70 i~~~a~~~g~~~~e~~ 85 (232)
+...|+.++.+|+-+.
T Consensus 46 f~dIak~L~R~p~hv~ 61 (157)
T 2e9h_A 46 MVDVAKALNRPPTYPT 61 (157)
T ss_dssp HHHHHHHTTSCTHHHH
T ss_pred HHHHHHHHCCCHHHHH
Confidence 3556666777665433
No 168
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=25.34 E-value=14 Score=32.48 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=19.2
Q ss_pred cCccCCCCCCCccc----------cCCcccCCCCccEEEEccceeE
Q psy2399 170 FCECCSSIYTPTKL----------INPYSILSGTKPIIKSSKHFFF 205 (232)
Q Consensus 170 ~Ce~Cg~~~~~~~l----------~~~~~~~~g~~~~~~~~~~~f~ 205 (232)
+|..|++.+...++ .-|+|+.||..+ |+---||-
T Consensus 146 ~C~~C~~~~~~~~~~~~~~~~~~~~~P~Cp~Cgg~l--rP~VV~FG 189 (361)
T 1q14_A 146 HCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELV--KPAIVFFG 189 (361)
T ss_dssp EETTTCCEECTHHHHHHTTSSSCSCCCBCTTTCCBE--EEEECCBT
T ss_pred CcCCCCccCcHHHHHHHHhhcccCCCCCCcCCCCEe--CCCccccc
Confidence 36666665543321 128999999753 44444553
No 169
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=25.19 E-value=78 Score=23.57 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhcCCEEecc---cceeec
Q psy2399 115 IDLVQKIYDTLYNKAKLIINKK---INQFFD 142 (232)
Q Consensus 115 ~~~v~~~~~~L~~~kG~iy~~~---~~~~~~ 142 (232)
...|-..++.|. +.|+|.+-. ....|+
T Consensus 61 ~aTVYR~L~~L~-e~Glv~~~~~~~~~~~Y~ 90 (150)
T 2xig_A 61 ISSVYRILNFLE-KENFISVLETSKSGRRYE 90 (150)
T ss_dssp HHHHHHHHHHHH-HTTSEEEEEETTTEEEEE
T ss_pred HhhHHHHHHHHH-HCCcEEEEEeCCCceEEE
Confidence 456778889999 999997633 344564
No 170
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=25.19 E-value=23 Score=29.02 Aligned_cols=30 Identities=7% Similarity=0.107 Sum_probs=20.0
Q ss_pred cCCcccCCCCccEEEEccceeEecCChhhHHHHHhh
Q psy2399 184 INPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKW 219 (232)
Q Consensus 184 ~~~~~~~~g~~~~~~~~~~~f~~L~~~~~~~~l~~~ 219 (232)
.+++|..||.++..|+-++ . +.++.+|..|
T Consensus 150 ~~~~~d~~g~~L~~R~DD~----~--e~i~~Rl~~y 179 (230)
T 3gmt_A 150 VEGKDDVTGEPLVQRDDDK----E--ETVKKRLDVY 179 (230)
T ss_dssp STTBCTTTCCBCBCCGGGS----H--HHHHHHHHHH
T ss_pred ccCcCCCccCccccCCCCC----H--HHHHHHHHHH
Confidence 4678888998887776554 2 5556666555
No 171
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=24.83 E-value=96 Score=26.49 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=21.3
Q ss_pred chHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCC
Q psy2399 29 IGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADD 64 (232)
Q Consensus 29 iGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D 64 (232)
-||+...+ .+++.|+.+| ++|.++.+-+
T Consensus 23 ~GHv~p~l---~la~~L~~~G-----h~V~~~~~~~ 50 (424)
T 2iya_A 23 HGHVNPSL---GIVQELVARG-----HRVSYAITDE 50 (424)
T ss_dssp HHHHHHHH---HHHHHHHHTT-----CEEEEEECGG
T ss_pred CcccchHH---HHHHHHHHCC-----CeEEEEeCHH
Confidence 69998766 4666777789 9999886543
No 172
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=24.51 E-value=20 Score=27.10 Aligned_cols=14 Identities=14% Similarity=0.226 Sum_probs=7.7
Q ss_pred HHHHHHcCCCHHHH
Q psy2399 71 MIAAEKAGMTPKEF 84 (232)
Q Consensus 71 ~~~a~~~g~~~~e~ 84 (232)
...|+.++.+|+-+
T Consensus 48 ~dIa~~L~R~p~hv 61 (138)
T 1nee_A 48 REVADALNRDPQHL 61 (138)
T ss_dssp HHHHHHHCSSHHHH
T ss_pred HHHHHHHCCCHHHH
Confidence 44556666665433
No 173
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=24.48 E-value=14 Score=30.42 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=18.4
Q ss_pred cCccCCCCCCCccc-------cCCcccCCCCccEEEEcccee
Q psy2399 170 FCECCSSIYTPTKL-------INPYSILSGTKPIIKSSKHFF 204 (232)
Q Consensus 170 ~Ce~Cg~~~~~~~l-------~~~~~~~~g~~~~~~~~~~~f 204 (232)
+|..|+..++.+++ .-|+|+.||..+ |+---||
T Consensus 123 ~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~l--rP~vv~F 162 (246)
T 1yc5_A 123 YCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLI--RPNIVFF 162 (246)
T ss_dssp EETTTCCEEEHHHHHHHTTTCSSCBCTTTCCBE--EEEECCB
T ss_pred EcCCCCCCCcHHHHHHHhccCCCCCCCCCCCcc--CcceEEC
Confidence 46666665443222 248999998753 4433344
No 174
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=23.94 E-value=25 Score=24.70 Aligned_cols=8 Identities=25% Similarity=0.808 Sum_probs=4.7
Q ss_pred cCccCCCC
Q psy2399 170 FCECCSSI 177 (232)
Q Consensus 170 ~Ce~Cg~~ 177 (232)
.|..||..
T Consensus 56 ~C~~Cg~~ 63 (92)
T 3iz5_m 56 GCKDCGKV 63 (92)
T ss_dssp ECSSSCCE
T ss_pred EcCCCCCE
Confidence 46666654
No 175
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=23.86 E-value=1.3e+02 Score=18.37 Aligned_cols=36 Identities=14% Similarity=-0.091 Sum_probs=20.1
Q ss_pred HHHHHHcCCCHHHHHHHH-------HHHHHHHHhccCCcCCcc
Q psy2399 71 MIAAEKAGMTPKEFINNI-------SSNRKKYLDGFYIKFDNW 106 (232)
Q Consensus 71 ~~~a~~~g~~~~e~~~~~-------~~~~~~~l~~lgI~~d~~ 106 (232)
...|++.|+++..+..-- .+.+....+.||++.+.+
T Consensus 30 ~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~l~~~l~~~~~~l 72 (74)
T 1y7y_A 30 ETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPREL 72 (74)
T ss_dssp HHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTSCGGGG
T ss_pred HHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHH
Confidence 445556666654443211 245566667778876654
No 176
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=23.79 E-value=53 Score=22.19 Aligned_cols=37 Identities=16% Similarity=0.476 Sum_probs=19.8
Q ss_pred cceeeccCCCccc-cc-ceeccCCCCCCccccCCCcCccCCCCC
Q psy2399 137 INQFFDPIKNIFL-PD-RYIKGECPICNAKDQYGDFCECCSSIY 178 (232)
Q Consensus 137 ~~~~~~~~~~~~l-~~-~~v~g~cp~c~~~~~~g~~Ce~Cg~~~ 178 (232)
....|||.|+..+ .+ ......||.|+.. +|-.|+...
T Consensus 23 ~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~-----FC~~C~~~w 61 (86)
T 2ct7_A 23 PKFLWCAQCSFGFIYEREQLEATCPQCHQT-----FCVRCKRQW 61 (86)
T ss_dssp CCEECCSSSCCCEECCCSCSCEECTTTCCE-----ECSSSCSBC
T ss_pred CCEeECcCCCchheecCCCCceEeCCCCCc-----cccccCCch
Confidence 3445777666633 22 2233467777553 366666543
No 177
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=23.48 E-value=1.2e+02 Score=24.43 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=17.5
Q ss_pred ChhHHHHHHHHHHHHHhhcCCEEec
Q psy2399 111 SIENIDLVQKIYDTLYNKAKLIINK 135 (232)
Q Consensus 111 ~~~~~~~v~~~~~~L~~~kG~iy~~ 135 (232)
++.+ ..+.+++..|. .+|+.+..
T Consensus 123 ~~~l-~~i~~~Y~~Lk-~~G~~FP~ 145 (226)
T 3zyq_A 123 EPKY-KVVQDTYQIMK-VEGHVFPE 145 (226)
T ss_dssp CGGG-HHHHHHHHHHH-HHTCCCCC
T ss_pred Ccch-HHHHHHHHHHH-hcCCCccc
Confidence 3444 56888999999 99988754
No 178
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=23.39 E-value=18 Score=24.33 Aligned_cols=10 Identities=20% Similarity=0.385 Sum_probs=5.8
Q ss_pred CcCccCCCCC
Q psy2399 169 DFCECCSSIY 178 (232)
Q Consensus 169 ~~Ce~Cg~~~ 178 (232)
..|..|+..+
T Consensus 46 W~C~~C~~~~ 55 (73)
T 1ffk_W 46 WVCGHCGYKI 55 (73)
T ss_pred EECCCCCcEE
Confidence 3467776643
No 179
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=23.25 E-value=1.1e+02 Score=20.37 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCCHHHH---HHHHH--------HHHHHHHhccCCcCCccccCC
Q psy2399 69 AIMIAAEKAGMTPKEF---INNIS--------SNRKKYLDGFYIKFDNWYSTD 110 (232)
Q Consensus 69 ~i~~~a~~~g~~~~e~---~~~~~--------~~~~~~l~~lgI~~d~~~~t~ 110 (232)
.....|+..|+++..+ +.++. +.+....+.|||+.+.+....
T Consensus 16 sq~~lA~~~gis~~~~~~~is~~E~g~~~p~~~~l~~la~~l~v~~~~l~~~~ 68 (98)
T 3lfp_A 16 SQEKLGVLAGIDEASASARMNQYEKGKHAPDFEMANRLAKVLKIPVSYLYTPE 68 (98)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHTSCGGGGGCCC
T ss_pred CHHHHHHHhCCCcchhhhHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHhCCC
Confidence 4466677788887662 33332 466677788999998876554
No 180
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=23.05 E-value=33 Score=25.95 Aligned_cols=13 Identities=15% Similarity=0.416 Sum_probs=7.5
Q ss_pred HHHHHHHHHhhcCC
Q psy2399 118 VQKIYDTLYNKAKL 131 (232)
Q Consensus 118 v~~~~~~L~~~kG~ 131 (232)
...+|+.|. +..+
T Consensus 33 ~~~fw~~l~-~g~L 45 (145)
T 2gnr_A 33 GEQFFNGLK-QNKI 45 (145)
T ss_dssp HHHHHHHHH-TTCC
T ss_pred hHHHHhhhh-CCEE
Confidence 456777776 4433
No 181
>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1 PDB: 1pz0_A*
Probab=22.77 E-value=90 Score=26.02 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhccCCcC-Cccc--cCCChhHHHHHHHHHHHHHhhcCCE
Q psy2399 86 NNISSNRKKYLDGFYIKF-DNWY--STDSIENIDLVQKIYDTLYNKAKLI 132 (232)
Q Consensus 86 ~~~~~~~~~~l~~lgI~~-d~~~--~t~~~~~~~~v~~~~~~L~~~kG~i 132 (232)
+.+.+.+.+.|++||+++ |.+. +.....-.+.+...+.+|. ++|+|
T Consensus 101 ~~i~~~~~~SL~rL~~dyiDl~~lH~p~~~~~~~e~~~al~~l~-~~Gki 149 (312)
T 1pyf_A 101 DFLKKSVDESLKRLNTDYIDLFYIHFPDEHTPKDEAVNALNEMK-KAGKI 149 (312)
T ss_dssp HHHHHHHHHHHHHHTSSCBSEEEECSCCSSSCHHHHHHHHHHHH-HTTSB
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCCCCCCCCHHHHHHHHHHHH-HCCCc
Confidence 566778889999999964 5443 1111123456778999999 99987
No 182
>2zvi_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; methionine salvage pathway, amino-acid biosynthesis, isomerase, magnesium, metal- binding; 2.30A {Bacillus subtilis}
Probab=22.76 E-value=1e+02 Score=27.64 Aligned_cols=67 Identities=15% Similarity=0.054 Sum_probs=45.1
Q ss_pred CCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEecCCChhhHHHH-----------HHHHHcCCCHHHHHHH
Q psy2399 19 ALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM-----------IAAEKAGMTPKEFINN 87 (232)
Q Consensus 19 ~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~g~D~~G~~i~-----------~~a~~~g~~~~e~~~~ 87 (232)
..|-|+|-+|.||+-.. .+..| -+|.+..|-..+|-|-- ..|...|.+..+.+..
T Consensus 343 v~PV~SGGih~~~~p~l---------~~~~G-----~Dvvl~~GGG~~gHP~G~aaGa~A~R~A~eA~~~g~~l~~~A~~ 408 (425)
T 2zvi_A 343 TFAVPSAGIHPGMVPLL---------MRDFG-----IDHIINAGGGVHGHPNGAQGGGRAFRAIIDAVLEAQPIDEKAEQ 408 (425)
T ss_dssp CEEEECSSCCGGGHHHH---------HHHHT-----TSBEEECGGGGGGSTTHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ceEeecCCcchhhHHHH---------HHHhC-----CceEEEcCccccCCCCCcHHHHHHHHHHHHHHHcCCChHHhhcc
Confidence 45778999999997643 46678 89999998776653211 1122367777777766
Q ss_pred HHHHHHHHHhccC
Q psy2399 88 ISSNRKKYLDGFY 100 (232)
Q Consensus 88 ~~~~~~~~l~~lg 100 (232)
+.+.+..|+.++
T Consensus 409 -~~eL~~Al~~w~ 420 (425)
T 2zvi_A 409 -CKDLKLALDKWG 420 (425)
T ss_dssp -CHHHHHHHHHHC
T ss_pred -CHHHHHHHHHhC
Confidence 666666666655
No 183
>5rub_A Rubisco (ribulose-1,5-bisphosphate carboxylase(slash)oxygenase); lyase(carbon-carbon); 1.70A {Rhodospirillum rubrum} SCOP: c.1.14.1 d.58.9.1 PDB: 1rus_A 2rus_A 9rub_A* 1rba_A
Probab=22.68 E-value=27 Score=32.06 Aligned_cols=75 Identities=15% Similarity=0.192 Sum_probs=50.8
Q ss_pred cCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCc-eeEEecCCChhhHH-----------HHHHHHHcCCCHHHHH
Q psy2399 18 TALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSR-QVYFICADDAHGAA-----------IMIAAEKAGMTPKEFI 85 (232)
Q Consensus 18 ~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~-~v~~~~g~D~~G~~-----------i~~~a~~~g~~~~e~~ 85 (232)
...|-|+|-+|.||+-. ..+..| . +|.+..|-..+|-| ....|.+.|.+..+++
T Consensus 386 ~v~PV~SGGih~g~~p~---------l~~~~G-----~~Dvi~~~GGGi~GHP~G~aAGa~A~RqA~eA~~~G~~l~e~A 451 (490)
T 5rub_A 386 ACTPIISGGMNALRMPG---------FFENLG-----NANVILTAGGGAFGHIDGPVAGARSLRQAWQAWRDGVPVLDYA 451 (490)
T ss_dssp CCEEEEEECCCTTTHHH---------HHHHHS-----CCCCEEEECTTTTCCTTCHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CcccccCCCcchhhHHH---------HHHHhC-----CCcEEEecCCcccCCCCCcHHHHHHHHHHHHHHHcCCCHHHHh
Confidence 44678899999999854 236668 6 68887777666522 1222345789888775
Q ss_pred HHHHHHHHHHHhccCCcCCccc
Q psy2399 86 NNISSNRKKYLDGFYIKFDNWY 107 (232)
Q Consensus 86 ~~~~~~~~~~l~~lgI~~d~~~ 107 (232)
.. +.+.+..|+.++-+-|.++
T Consensus 452 k~-~~eL~~Ale~w~~~~~~~~ 472 (490)
T 5rub_A 452 RE-HKELARAFESFPGDADQIY 472 (490)
T ss_dssp HT-CHHHHHHHHHSHHHHHHHS
T ss_pred hc-CHHHHHHHHHcCcchhhcC
Confidence 43 4677788888887766554
No 184
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=22.61 E-value=77 Score=20.12 Aligned_cols=26 Identities=8% Similarity=0.184 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhhcCCEEecccceeec
Q psy2399 115 IDLVQKIYDTLYNKAKLIINKKINQFFD 142 (232)
Q Consensus 115 ~~~v~~~~~~L~~~kG~iy~~~~~~~~~ 142 (232)
+..|+..+..|. +.|+|.. ...++|.
T Consensus 39 r~tv~~~l~~L~-~~G~I~~-~~~G~y~ 64 (67)
T 2heo_A 39 KKTLNQVLYRLK-KEDRVSS-PSPKYWS 64 (67)
T ss_dssp HHHHHHHHHHHH-HTTSEEE-EETTEEE
T ss_pred HHHHHHHHHHHH-HCCcEec-CCCceEe
Confidence 678999999999 9999866 4446664
No 185
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=22.61 E-value=70 Score=20.45 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhcCCEEe
Q psy2399 115 IDLVQKIYDTLYNKAKLIIN 134 (232)
Q Consensus 115 ~~~v~~~~~~L~~~kG~iy~ 134 (232)
++.|..++++|. +||+|..
T Consensus 39 kdeV~~~LrrLe-~KGLI~l 57 (59)
T 2xvc_A 39 KQEVVKLLEALK-NKGLIAV 57 (59)
T ss_dssp HHHHHHHHHHHH-HTTSEEE
T ss_pred HHHHHHHHHHHH-HCCCeec
Confidence 567888999999 9999854
No 186
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=22.52 E-value=77 Score=23.74 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhcCCEEecccceeeccCCCccc-ccceeccCCCCCCcc
Q psy2399 118 VQKIYDTLYNKAKLIINKKINQFFDPIKNIFL-PDRYIKGECPICNAK 164 (232)
Q Consensus 118 v~~~~~~L~~~kG~iy~~~~~~~~~~~~~~~l-~~~~v~g~cp~c~~~ 164 (232)
...+|+.|. +..++.. -|.+|++.. +.+ ..||.|++.
T Consensus 33 ~~~F~~~l~-~grL~~~------rC~~CG~~~~PPr---~~Cp~C~s~ 70 (145)
T 3irb_A 33 GEQFFNGLK-QNKIIGS------KCSKCGRIFVPAR---SYCEHCFVK 70 (145)
T ss_dssp HHHHHHHHH-TTCCEEE------ECTTTCCEEESCC---SEETTTTEE
T ss_pred HHHHHHHHH-cCeEEEE------EeCCCCcEEcCch---hhCcCCCCC
Confidence 467888887 6544433 255555543 222 235555543
No 187
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.37 E-value=25 Score=24.22 Aligned_cols=9 Identities=22% Similarity=0.936 Sum_probs=5.3
Q ss_pred cCccCCCCC
Q psy2399 170 FCECCSSIY 178 (232)
Q Consensus 170 ~Ce~Cg~~~ 178 (232)
.|..||..+
T Consensus 55 ~C~kCg~~~ 63 (83)
T 3j21_i 55 QCQKCGATF 63 (83)
T ss_dssp EETTTCCEE
T ss_pred EcCCCCCEE
Confidence 466676543
No 188
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.27 E-value=88 Score=23.13 Aligned_cols=29 Identities=17% Similarity=0.175 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhhcCCEEecc---cceeecc
Q psy2399 114 NIDLVQKIYDTLYNKAKLIINKK---INQFFDP 143 (232)
Q Consensus 114 ~~~~v~~~~~~L~~~kG~iy~~~---~~~~~~~ 143 (232)
-...|-+.++.|. +.|+|.+-. ....|+.
T Consensus 51 s~~TVYR~L~~L~-e~Glv~~i~~~~~~~~Y~~ 82 (145)
T 3eyy_A 51 NISTVYRTLELLE-ELGLVSHAHLGHGAPTYHL 82 (145)
T ss_dssp CHHHHHHHHHHHH-HHTSEEEEECGGGCEEEEE
T ss_pred CHhHHHHHHHHHH-HCCcEEEEEeCCCceEEEe
Confidence 3567788899999 999997633 3455653
No 189
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=22.14 E-value=19 Score=30.59 Aligned_cols=33 Identities=18% Similarity=0.392 Sum_probs=18.0
Q ss_pred cCccCCCCCCCccc-------cCCcccCCCCccEEEEcccee
Q psy2399 170 FCECCSSIYTPTKL-------INPYSILSGTKPIIKSSKHFF 204 (232)
Q Consensus 170 ~Ce~Cg~~~~~~~l-------~~~~~~~~g~~~~~~~~~~~f 204 (232)
.|..|++.+..+++ .-|+|..||.. +|+---||
T Consensus 141 ~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~--lrP~IV~F 180 (285)
T 3glr_A 141 TCTVCQRPFPGEDIRADVMADRVPRCPVCTGV--VKPDIVFF 180 (285)
T ss_dssp EETTTCCEEEGGGGHHHHHTTCCCBCTTTCCB--EEEEECCT
T ss_pred EECCCCCcCCHHHHHHHhhcCCCCCCCCCCCc--cCCcEEEe
Confidence 35566655543322 24789888864 34444444
No 190
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.74 E-value=22 Score=25.24 Aligned_cols=10 Identities=50% Similarity=1.521 Sum_probs=6.6
Q ss_pred ccCCCCCCcc
Q psy2399 155 KGECPICNAK 164 (232)
Q Consensus 155 ~g~cp~c~~~ 164 (232)
.+.||-||++
T Consensus 47 g~~CPvCgs~ 56 (112)
T 1l8d_A 47 KGKCPVCGRE 56 (112)
T ss_dssp SEECTTTCCE
T ss_pred CCCCCCCCCc
Confidence 4468877664
No 191
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=21.73 E-value=94 Score=19.01 Aligned_cols=37 Identities=8% Similarity=-0.057 Sum_probs=21.6
Q ss_pred HHHHHHHcC--CCHHHHHHHH-------HHHHHHHHhccCCcCCcc
Q psy2399 70 IMIAAEKAG--MTPKEFINNI-------SSNRKKYLDGFYIKFDNW 106 (232)
Q Consensus 70 i~~~a~~~g--~~~~e~~~~~-------~~~~~~~l~~lgI~~d~~ 106 (232)
....|++.| +++..+..-- .+.+.+..+.||++++.+
T Consensus 24 q~~lA~~~g~~is~~~i~~~e~g~~~~~~~~l~~la~~l~v~~~~l 69 (71)
T 2ewt_A 24 LHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQEL 69 (71)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHTCSCCCHHHHHHHHHHHTSCGGGG
T ss_pred HHHHHHHHCCcCCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 355666677 6665443221 245666667778877655
No 192
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=21.67 E-value=28 Score=29.52 Aligned_cols=17 Identities=24% Similarity=0.299 Sum_probs=11.0
Q ss_pred CCcccCCCCccEEEEcccee
Q psy2399 185 NPYSILSGTKPIIKSSKHFF 204 (232)
Q Consensus 185 ~~~~~~~g~~~~~~~~~~~f 204 (232)
-|+|+ ||.. +|+---||
T Consensus 182 ~P~C~-Cgg~--lrPdVV~F 198 (290)
T 3u31_A 182 PPECP-CGGI--FKPNIILF 198 (290)
T ss_dssp SCBCT-TSCB--EEEEECCB
T ss_pred CCCCC-CCCE--ECCeEEEc
Confidence 48999 9865 45544455
No 193
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=21.53 E-value=1e+02 Score=21.62 Aligned_cols=38 Identities=8% Similarity=0.086 Sum_probs=21.7
Q ss_pred HHHHHHcCCCHHHHHHHH-------HHHHHHHHhccCCcCCcccc
Q psy2399 71 MIAAEKAGMTPKEFINNI-------SSNRKKYLDGFYIKFDNWYS 108 (232)
Q Consensus 71 ~~~a~~~g~~~~e~~~~~-------~~~~~~~l~~lgI~~d~~~~ 108 (232)
...|+..|+++..+..-- .+.+.+..+.|||+.+.+..
T Consensus 29 ~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~~~~l~~ 73 (126)
T 3ivp_A 29 EQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFL 73 (126)
T ss_dssp HHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSHHHHS
T ss_pred HHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHhC
Confidence 344455555544432211 25667777889998776543
No 194
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=21.49 E-value=1.1e+02 Score=18.87 Aligned_cols=18 Identities=11% Similarity=-0.066 Sum_probs=11.5
Q ss_pred HHHHHHHhccCCcCCccc
Q psy2399 90 SNRKKYLDGFYIKFDNWY 107 (232)
Q Consensus 90 ~~~~~~l~~lgI~~d~~~ 107 (232)
+.+.+..+.||++.+.+.
T Consensus 48 ~~l~~ia~~l~~~~~~l~ 65 (76)
T 1adr_A 48 ENLLALSKALQCSPDYLL 65 (76)
T ss_dssp HHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHCcCHHHHh
Confidence 445566677777766654
No 195
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=21.42 E-value=12 Score=25.07 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=12.6
Q ss_pred CCcccCCCCccEEEEccceeEec
Q psy2399 185 NPYSILSGTKPIIKSSKHFFFKL 207 (232)
Q Consensus 185 ~~~~~~~g~~~~~~~~~~~f~~L 207 (232)
--.|+ ||.....++... |++-
T Consensus 21 T~~C~-CG~~~~~~k~ri-f~~~ 41 (71)
T 1gh9_A 21 TRKCV-CGRTVNVKDRRI-FGRA 41 (71)
T ss_dssp EEEET-TTEEEECCSSSC-BSCC
T ss_pred EEECC-CCCeeeeceEEE-EEec
Confidence 34676 887777555544 4444
No 196
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=21.34 E-value=20 Score=20.36 Aligned_cols=9 Identities=33% Similarity=1.028 Sum_probs=5.8
Q ss_pred CccCCCCCC
Q psy2399 171 CECCSSIYT 179 (232)
Q Consensus 171 Ce~Cg~~~~ 179 (232)
|+.||.+..
T Consensus 9 C~~CGnive 17 (36)
T 1dxg_A 9 CELCGQVVK 17 (36)
T ss_dssp CTTTCCEEE
T ss_pred cCCCCcEEE
Confidence 677776654
No 197
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=21.27 E-value=30 Score=24.28 Aligned_cols=8 Identities=38% Similarity=1.335 Sum_probs=4.5
Q ss_pred cCccCCCC
Q psy2399 170 FCECCSSI 177 (232)
Q Consensus 170 ~Ce~Cg~~ 177 (232)
.|..||..
T Consensus 56 ~C~~C~~~ 63 (92)
T 3izc_m 56 TCSCCKKT 63 (92)
T ss_dssp ECTTTCCE
T ss_pred EcCCCCCE
Confidence 36666653
No 198
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=20.51 E-value=83 Score=25.34 Aligned_cols=59 Identities=3% Similarity=-0.065 Sum_probs=36.7
Q ss_pred ccCCCCCCccccCCCcCccCCCCCCCcccc------CCcccCCCCccEEEEccceeEecCChhhHHHHHhhh
Q psy2399 155 KGECPICNAKDQYGDFCECCSSIYTPTKLI------NPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWA 220 (232)
Q Consensus 155 ~g~cp~c~~~~~~g~~Ce~Cg~~~~~~~l~------~~~~~~~g~~~~~~~~~~~f~~L~~~~~~~~l~~~~ 220 (232)
.-.||.|.... .-+..-.||+.+.-.-|. ...|+.|+.++. ... ..+- ...+..+.+|+
T Consensus 208 ~~~c~i~~~~~-~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~---~~~-l~~n--~~l~~~i~~~~ 272 (281)
T 2c2l_A 208 YLCGKISFELM-REPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT---QEQ-LIPN--LAMKEVIDAFI 272 (281)
T ss_dssp TTBCTTTCSBC-SSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC---GGG-CEEC--HHHHHHHHHHH
T ss_pred ccCCcCcCCHh-cCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc---hhc-Cccc--HHHHHHHHHHH
Confidence 34688887754 334455688777644331 234899988774 223 2344 57888888883
No 199
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=20.46 E-value=39 Score=24.31 Aligned_cols=10 Identities=30% Similarity=0.909 Sum_probs=4.7
Q ss_pred CccCCCCCCC
Q psy2399 171 CECCSSIYTP 180 (232)
Q Consensus 171 Ce~Cg~~~~~ 180 (232)
|+.||.++.+
T Consensus 7 Cp~Cgn~L~~ 16 (113)
T 3h0g_I 7 CIECNNMLYP 16 (113)
T ss_dssp CSSSCCCCEE
T ss_pred CcCCCCEeeE
Confidence 4445544433
No 200
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=20.39 E-value=26 Score=24.79 Aligned_cols=16 Identities=25% Similarity=0.632 Sum_probs=12.3
Q ss_pred cCccCCCCCCCccccC
Q psy2399 170 FCECCSSIYTPTKLIN 185 (232)
Q Consensus 170 ~Ce~Cg~~~~~~~l~~ 185 (232)
.|.+||++..-..|++
T Consensus 77 vCn~CGkPI~l~AIvD 92 (96)
T 3mhs_E 77 VCEKCGKPLALTAIVD 92 (96)
T ss_dssp EETTTCCEECGGGTTT
T ss_pred hhhccCCceeHHHHHH
Confidence 4999999887766654
No 201
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=20.32 E-value=22 Score=33.42 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=2.4
Q ss_pred CCcCccCCCCCCCccc--cCCcccCCCC
Q psy2399 168 GDFCECCSSIYTPTKL--INPYSILSGT 193 (232)
Q Consensus 168 g~~Ce~Cg~~~~~~~l--~~~~~~~~g~ 193 (232)
-+.|..||..-.. .+ ....|+.||+
T Consensus 540 ~~~C~~CGy~~~~-~~~~~~~~CP~Cg~ 566 (605)
T 1h7b_A 540 VDKCFTCGSTHEM-TPTENGFVCSICGE 566 (605)
T ss_dssp EEET------------------------
T ss_pred CccCcccCCcCcc-CccccCCcCCCCCC
Confidence 4567777742210 11 1246777775
No 202
>4fc5_A TON_0340, putative uncharacterized protein; unknown function; 2.30A {Thermococcus onnurineus}
Probab=20.24 E-value=1.3e+02 Score=25.20 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=31.5
Q ss_pred CCCcEEEEcCCCCCCCcCCchHHHhHHHHHHHHHHHHHcCCCCCCceeEEec
Q psy2399 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFIC 61 (232)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~v~~Dvl~R~lr~~G~~~~~~~v~~~~ 61 (232)
+.++++|+|++|.|+.. ..--=+-+-+=.++|.|+..| .++..++
T Consensus 40 ~~~~vlI~TGFpv~~~~--~~ETDGP~GA~ala~aL~~lG-----~~~~ivt 84 (270)
T 4fc5_A 40 NLERVLIVTGFPIPPMM--VAETDGPPGALAIYRAVEMLG-----GKAEILT 84 (270)
T ss_dssp CCTTEEEEECCCBTTTT--BCBSSSHHHHHHHHHHHHHTT-----CCEEEEC
T ss_pred CCCceEEEeCcccCCCC--CcccCCcHHHHHHHHHHHHcC-----CceEEEe
Confidence 44678999998876432 111113456677899999999 9999886
No 203
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=20.08 E-value=1e+02 Score=19.50 Aligned_cols=17 Identities=6% Similarity=0.085 Sum_probs=10.1
Q ss_pred HHHHHHHhccCCcCCcc
Q psy2399 90 SNRKKYLDGFYIKFDNW 106 (232)
Q Consensus 90 ~~~~~~l~~lgI~~d~~ 106 (232)
+.+.+..+.||++.+.+
T Consensus 45 ~~l~~ia~~l~v~~~~l 61 (77)
T 2k9q_A 45 VKYIAFLRSKGVDLNAL 61 (77)
T ss_dssp HHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHhCcCHHHH
Confidence 44556666777765543
Done!