RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2399
(232 letters)
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 111 bits (277), Expect = 1e-29
Identities = 69/157 (43%), Positives = 101/157 (64%), Gaps = 7/157 (4%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
++I VT ALPYANG +H+GH++E+IQAD+WVR+Q M+ V FICADDAHG IM
Sbjct: 2 KKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHE-----VNFICADDAHGTPIM 56
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
+ A++ G+TP++ I +S + GF I +DN++ST S EN L + IY L +
Sbjct: 57 LKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLK-ENGF 115
Query: 132 IINKKINQFFDPIKNIFLPDRY-IKGECPICNAKDQY 167
I N+ I+Q +DP K +FLPDR+ + G P+ + +
Sbjct: 116 IKNRTISQLYDPEKGMFLPDRFVVSGATPVMRDSEHF 152
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 90.8 bits (224), Expect = 5e-22
Identities = 54/220 (24%), Positives = 88/220 (40%), Gaps = 11/220 (5%)
Query: 13 RIFVTTALPYANGELHIGHIM-EYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
R VT+ALPYANG +H GH+ Y+ ADI+VR+ ++ ++ V FIC D HG I
Sbjct: 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGED-----VVFICGTDEHGTPIS 57
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
A K G +P+E ++ K I FD + T+ + L Q+ + Y
Sbjct: 58 FRALKEGRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGH- 116
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
++ K Q + +FLPDR+ PI + + L
Sbjct: 117 LVKKVTKQAYCEHDKMFLPDRFAICGRPISFRDSAHYYIKMQDFAER----LKRWIEKQP 172
Query: 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIF 231
+ + + ++R I W I + ++
Sbjct: 173 WKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMK 212
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 89.7 bits (221), Expect = 8e-22
Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 6/171 (3%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
+ +VTT + Y N E H+GH + AD R+ + +F+ D HG +
Sbjct: 3 KVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYR-----TFFLTGTDEHGETVY 57
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
AA+ AG PK F++ +S K+ D I +D++ T + +VQ + +Y +A
Sbjct: 58 RAAQAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVY-EAGD 116
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTK 182
I + + F ++ + + + +
Sbjct: 117 IYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYR 167
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 88.9 bits (219), Expect = 4e-21
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 7/149 (4%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
+V PY +G+LH+GH+ Y D+ RF+ MQ V DA G AA
Sbjct: 36 YVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYE-----VLHPMGWDAFGLPAENAA 90
Query: 75 EKAGMTPKEFINNISSNRKKYLD--GFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLI 132
K G+ PK++ K+ L G +D +T E Q I+ ++ K
Sbjct: 91 LKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAY 150
Query: 133 INKKINQFFDPIKNIFLPDRYIKGECPIC 161
K + + + + ++ ++G C
Sbjct: 151 RAKGLVNWCPKCQTVLANEQVVEGRCWRH 179
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 70.7 bits (172), Expect = 8e-15
Identities = 33/211 (15%), Positives = 60/211 (28%), Gaps = 16/211 (7%)
Query: 2 KKHDSEFKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFIC 61
+K K R V P ANG H+GH D++ R++ M+
Sbjct: 28 QKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYY-----APRRA 82
Query: 62 ADDAHGAAIMIAAE-KAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQK 120
D HG + + E K G+ K I R S + E
Sbjct: 83 GWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQA--------CRESVFTYEKEWEAFT 134
Query: 121 IYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTP 180
+ + + + I + + +G + Y
Sbjct: 135 ERIAYWVDLEDAYATLEPTYIESIWWSLK-NLFDRGLLYRDHKVVPY-CPRCGTPLSSHE 192
Query: 181 TKLINPYSILSGTKPIIKSSKHFFFKLSDKR 211
L P+ T + +++ +F K + +
Sbjct: 193 VALGYPHCWRCSTPLMYYATESWFIKNTLFK 223
>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS),
Zn-domain {Escherichia coli [TaxId: 562]}
Length = 35
Score = 63.5 bits (155), Expect = 1e-14
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 154 IKGECPICNAKDQYGDFCECCSSIYTPTKLINPYS 188
+KG CP C + DQYGD CE C + Y+PT+LI P S
Sbjct: 1 VKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKS 35
>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS),
Zn-domain {Pyrococcus abyssi [TaxId: 29292]}
Length = 35
Score = 60.4 bits (147), Expect = 2e-13
Identities = 18/33 (54%), Positives = 20/33 (60%)
Query: 154 IKGECPICNAKDQYGDFCECCSSIYTPTKLINP 186
+ G CP C A+DQ GD CE C TP LINP
Sbjct: 1 VIGTCPYCGAEDQKGDQCEVCGRPLTPEILINP 33
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 64.9 bits (157), Expect = 6e-13
Identities = 26/229 (11%), Positives = 63/229 (27%), Gaps = 30/229 (13%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
+ P G LH+GH ++ D +R++ M+ ++ D G A +
Sbjct: 37 VIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFE-----AVWLPGTDHAGIATQVVV 91
Query: 75 EKAGMTPKEFINNISSNRKKYLD------------------GFYIKFDNWYSTDSIENID 116
E+ + + +++ + G + T +
Sbjct: 92 ERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSR 151
Query: 117 LVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSS 176
V+ + Y++ ++ + P L D C+ ++
Sbjct: 152 AVRYAFSRYYHEGLAYRAPRL-VNWCPRCETTLSDLE----VETCSRCGTPIEYAIFPQW 206
Query: 177 IYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKR 225
L I + + D ++ ++ W I +
Sbjct: 207 WLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMD--WLENVKDWNISRQL 253
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 60.4 bits (145), Expect = 2e-11
Identities = 44/236 (18%), Positives = 77/236 (32%), Gaps = 22/236 (9%)
Query: 2 KKHDSEFKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFIC 61
K + K + PYANG LH+GH + I D VR++ MQ ++
Sbjct: 38 HKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFY-----APYVP 92
Query: 62 ADDAHGAAIMIAAEKAG-----MTPKEFINNISSNRKKYLDGFYIKF---------DNWY 107
D HG I A K G M+ EF + ++ F ++ Y
Sbjct: 93 GWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPY 152
Query: 108 STDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQY 167
T E +I+ + +K + KK ++ P L + I+ K
Sbjct: 153 ITLKPEYEAAQIRIFGEMADKGLIYKGKKP-VYWSPSSESSLAEAEIEYPHDWRTKKPVI 211
Query: 168 GDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKR--CIDFLRKWAI 221
+ + + +I + + + + D+ I R W +
Sbjct: 212 FRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGV 267
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 45.5 bits (106), Expect = 2e-06
Identities = 17/169 (10%), Positives = 42/169 (24%), Gaps = 6/169 (3%)
Query: 7 EFKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAH 66
+ + +V + +G +H+G+ E A I + V I D +
Sbjct: 12 RERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYE-----VRHIHMWDDY 66
Query: 67 GAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDS-IENIDLVQKIYDTL 125
+ IS + + +E + + +
Sbjct: 67 DRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYAS 126
Query: 126 YNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECC 174
+ +++I F+ I + + + C
Sbjct: 127 ELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYC 175
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 34.5 bits (78), Expect = 0.007
Identities = 17/126 (13%), Positives = 41/126 (32%), Gaps = 6/126 (4%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMT 80
HIGH ++ D+ R+ + ++ I+ A + G +
Sbjct: 30 ITVYDLCHIGHGRTFVAFDVVARYLRFLGYK-----LKYVRNITDIDDKIIKRANENGES 84
Query: 81 PKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQF 140
++ + + K D I + + +I + ++ + L K + +
Sbjct: 85 FVAMVDRMIAEMHKDFDALNILRPDMEPR-ATHHIAEIIELTEQLIAKGHAYVADNGDVM 143
Query: 141 FDPIKN 146
FD +
Sbjct: 144 FDVPTD 149
>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha
subunit {Oxytricha nova [TaxId: 200597]}
Length = 169
Score = 29.6 bits (66), Expect = 0.21
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 180 PTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAI 221
T+ IN +S T P SSKH + ++ + LRKWA
Sbjct: 121 VTQEINNQDAVSDTTPFSFSSKHATIEKNEISILQNLRKWAN 162
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 306
Score = 27.7 bits (60), Expect = 1.3
Identities = 21/185 (11%), Positives = 49/185 (26%), Gaps = 16/185 (8%)
Query: 25 GELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEF 84
G++H+GH Y+Q + Q D + + AD A + E +
Sbjct: 39 GKIHLGH---YLQIKKMIDLQNAGFD------IIILLADLH--AYLNQKGELDEIRKIGD 87
Query: 85 INNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPI 144
N + + D N+ + + + + + ++
Sbjct: 88 YNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIAREDENPKVA 147
Query: 145 KNIFLPDRYIKGE----CPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSS 200
+ I+ P + + + + + +L+G K S
Sbjct: 148 EVIY-PIMQVNDIHYLGVDVAVGGMEQRKIHMLARELLPKKVVCIHNPVLTGLDGEGKMS 206
Query: 201 KHFFF 205
Sbjct: 207 SSKGN 211
>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 132
Score = 26.7 bits (59), Expect = 1.4
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 21/93 (22%)
Query: 33 MEYIQADIWVRFQCMQQ----DNGKSRQVYFICADDAH-----------GAAIMIAAEKA 77
ME + AD+ + DN +R++ I G I ++ K
Sbjct: 1 MEALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKG 60
Query: 78 -----GMTPKEFINNISSNRKKYLDGFYIKFDN 105
+ + ++ DG +KF++
Sbjct: 61 TPEMRRQVLEAVVVRQRKPIRRP-DGTRVKFED 92
>d2icsa2 c.1.9.14 (A:55-321) Putative adenine deaminase EF0837
{Enterococcus faecalis [TaxId: 1351]}
Length = 267
Score = 26.8 bits (57), Expect = 2.3
Identities = 8/107 (7%), Positives = 25/107 (23%), Gaps = 11/107 (10%)
Query: 1 MKKHDSEFKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFI 60
+ + ++ T + + + ++ I + + +
Sbjct: 155 LTHCFNGKENGILDQATDKIKDFAWQAYNKGVVFDIGHGTDSFNFHVAETALREGMKAAS 214
Query: 61 CADDAHG-----------AAIMIAAEKAGMTPKEFINNISSNRKKYL 96
+ D + A M G E I ++ +
Sbjct: 215 ISTDIYIRNRENGPVYDLATTMEKLRVVGYDWPEIIEKVTKAPAENF 261
>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 140
Score = 25.5 bits (56), Expect = 3.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 198 KSSKHFFFKLSDKRCIDFLRKWA 220
SSK+F F D + ++ LR WA
Sbjct: 113 TSSKYFNFTTEDHKMVEALRVWA 135
>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human
(Homo sapiens) [TaxId: 9606]}
Length = 43
Score = 23.6 bits (51), Expect = 4.8
Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 156 GECPICNAKDQYGDFCECC 174
G C +C YGD CE C
Sbjct: 22 GSC-VCIQPGSYGDTCEKC 39
>d1xvha1 a.8.1.2 (A:3-72) Ebh protein {Staphylococcus aureus [TaxId:
1280]}
Length = 70
Score = 23.5 bits (51), Expect = 8.2
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 119 QKIYDTLYNKAKLIINKKINQFFDP 143
+ Y+ + A+ I+NK+
Sbjct: 29 RNAYNQAVSAAETILNKQTGPNTAK 53
>d1k8ta_ e.41.1.1 (A:) Adenylylcyclase toxin (the edema factor)
{Bacillus anthracis [TaxId: 1392]}
Length = 509
Score = 24.9 bits (54), Expect = 10.0
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 80 TPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKK 136
T EFI N+SS R+ G Y + E++ + YN A I +++
Sbjct: 369 TSAEFIKNLSSIRRSSNVGVYKDSGDKDEFAKKESVKKIAGYLSDYYNSANHIFSQE 425
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.141 0.443
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 951,327
Number of extensions: 45845
Number of successful extensions: 248
Number of sequences better than 10.0: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 40
Length of query: 232
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,281,736
Effective search space: 192260400
Effective search space used: 192260400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.7 bits)