BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy240
(376 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GPH|1 Chain 1, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|2 Chain 2, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|3 Chain 3, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|4 Chain 4, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
Length = 465
Score = 131 bits (329), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 152/311 (48%), Gaps = 59/311 (18%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMIS 81
CGVF G W + + GL +LQHRGQE AGIV ++G + KG G+I+
Sbjct: 1 CGVF-----GIWGHE-EAPQITYYGLHSLQHRGQEGAGIVATDG---EKLTAHKGQGLIT 51
Query: 82 NIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTA-HGVLAVAHNGEIVNAERL 140
+F + L K+KG IGH RY+T+ N QP + + +G LA+AHNG +VNA +L
Sbjct: 52 EVFQNGELSKVKGKGAIGHVRYATAGGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQL 111
Query: 141 RRMVLSRGVGLSTRSDSELITQALCLNPPDGERDGP-DWPARITHLMKLTPLSYSLVIME 199
++ + ++G T SD+E++ + +R G +I + + + +Y+ +IM
Sbjct: 112 KQQLENQGSIFQTSSDTEVLAHLI-------KRSGHFTLKDQIKNSLSMLKGAYAFLIMT 164
Query: 200 KDRVFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVTSEGIDSRRFNIMKGMG 259
+ + DP G RPL IG M G A +V SE + F+++
Sbjct: 165 ETEMIVALDPNGLRPLSIG----MMG------------DAYVVASE---TCAFDVV---- 201
Query: 260 MISNIFNDENLKKLKGARYVREVYPGEILEVSRTGIKTVSIVRRPDDKPPAFCIFEYVYF 319
GA Y+REV PGE+L ++ G+K+ R + + C EY+YF
Sbjct: 202 ---------------GATYLREVEPGEMLIINDEGMKS---ERFSMNINRSICSMEYIYF 243
Query: 320 ARSDSIFEGAD 330
+R DS +G +
Sbjct: 244 SRPDSNIDGIN 254
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 328 GADSLQYLSVEGLKQAVQLKMKVDSAEGSFGHCTACLTGEYPEEL 372
GAD+L +LSVEGL + + K + + G C AC TG+YP E+
Sbjct: 409 GADTLSFLSVEGLLKGIGRKYD----DSNCGQCLACFTGKYPTEI 449
>pdb|1AO0|A Chain A, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|B Chain B, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|C Chain C, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|D Chain D, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
Length = 459
Score = 130 bits (328), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 152/311 (48%), Gaps = 59/311 (18%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMIS 81
CGVF G W + + GL +LQHRGQE AGIV ++G + KG G+I+
Sbjct: 1 CGVF-----GIWGHE-EAPQITYYGLHSLQHRGQEGAGIVATDG---EKLTAHKGQGLIT 51
Query: 82 NIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTA-HGVLAVAHNGEIVNAERL 140
+F + L K+KG IGH RY+T+ N QP + + +G LA+AHNG +VNA +L
Sbjct: 52 EVFQNGELSKVKGKGAIGHVRYATAGGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQL 111
Query: 141 RRMVLSRGVGLSTRSDSELITQALCLNPPDGERDGP-DWPARITHLMKLTPLSYSLVIME 199
++ + ++G T SD+E++ + +R G +I + + + +Y+ +IM
Sbjct: 112 KQQLENQGSIFQTSSDTEVLAHLI-------KRSGHFTLKDQIKNSLSMLKGAYAFLIMT 164
Query: 200 KDRVFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVTSEGIDSRRFNIMKGMG 259
+ + DP G RPL IG M G A +V SE + F+++
Sbjct: 165 ETEMIVALDPNGLRPLSIG----MMG------------DAYVVASE---TCAFDVV---- 201
Query: 260 MISNIFNDENLKKLKGARYVREVYPGEILEVSRTGIKTVSIVRRPDDKPPAFCIFEYVYF 319
GA Y+REV PGE+L ++ G+K+ R + + C EY+YF
Sbjct: 202 ---------------GATYLREVEPGEMLIINDEGMKS---ERFSMNINRSICSMEYIYF 243
Query: 320 ARSDSIFEGAD 330
+R DS +G +
Sbjct: 244 SRPDSNIDGIN 254
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 328 GADSLQYLSVEGLKQAVQLKMKVDSAEGSFGHCTACLTGEYPEEL 372
GAD+L +LSVEGL + + K + + G C AC TG+YP E+
Sbjct: 409 GADTLSFLSVEGLLKGIGRKYD----DSNCGQCLACFTGKYPTEI 449
>pdb|1ECF|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase
pdb|1ECF|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase
pdb|1ECG|A Chain A, Don Inactivated Escherichia Coli Glutamine
Phosphoribosylpyrophosphate (Prpp) Amidotransferase
pdb|1ECG|B Chain B, Don Inactivated Escherichia Coli Glutamine
Phosphoribosylpyrophosphate (Prpp) Amidotransferase
pdb|1ECB|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|C Chain C, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|D Chain D, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECC|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With Mn-Cprpp And
5-Oxo- Norleucine
pdb|1ECC|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With Mn-Cprpp And
5-Oxo- Norleucine
pdb|1ECJ|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|C Chain C, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|D Chain D, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
Length = 504
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/314 (31%), Positives = 149/314 (47%), Gaps = 55/314 (17%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRR-FNIMKGMGMI 80
CG+ G P V +I L LQHRGQ++AGI+T ID+ F + K G++
Sbjct: 1 CGIVGI--AGVMP----VNQSIYDALTVLQHRGQDAAGIIT---IDANNCFRLRKANGLV 51
Query: 81 SNIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERL 140
S++F ++++L+GN+GIGH RY T+ +S QPF V++ +G+ +AHNG + NA L
Sbjct: 52 SDVFEARHMQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYGI-TLAHNGNLTNAHEL 110
Query: 141 RRMVL-SRGVGLSTRSDSELITQALCLNPPDGERDGP----DWPARITHLMKLTPLSYSL 195
R+ + + ++T SDSE++ + D R P + A I +L +Y+
Sbjct: 111 RKKLFEEKRRHINTTSDSEILLNIFA-SELDNFRHYPLEADNIFAAIAATNRLIRGAYAC 169
Query: 196 VIMEKDR-VFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVTSEGIDSRRFNI 254
V M + A RDP G RPL +GK ID R
Sbjct: 170 VAMIIGHGMVAFRDPNGIRPLVLGK-------------------------RDIDENRTEY 204
Query: 255 MKGMGMISNIFNDENLKKLKGARYVREVYPGEILEVSRTG-IKTVSIVRRPDDKPPAFCI 313
M ++ L L G ++R+V PGE + ++ G + T P P C+
Sbjct: 205 MVASESVA-------LDTL-GFDFLRDVAPGEAIYITEEGQLFTRQCADNPVSNP---CL 253
Query: 314 FEYVYFARSDSIFE 327
FEYVYFAR DS +
Sbjct: 254 FEYVYFARPDSFID 267
>pdb|1XFF|A Chain A, Glutaminase Domain Of Glucosamine 6-Phosphate Synthase
Complexed With Glutamate
pdb|1XFF|B Chain B, Glutaminase Domain Of Glucosamine 6-Phosphate Synthase
Complexed With Glutamate
pdb|1XFG|A Chain A, Glutaminase Domain Of Glucosamine 6-phosphate Synthase
Complexed With L-glu Hydroxamate
pdb|1XFG|B Chain B, Glutaminase Domain Of Glucosamine 6-phosphate Synthase
Complexed With L-glu Hydroxamate
Length = 240
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 94/202 (46%), Gaps = 26/202 (12%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAG--IVTSEGIDSRRFNIMKGMGM 79
CG+ ++ Q DVA + GL L++RG +SAG +V +EG +R ++ +G
Sbjct: 1 CGIVGAIA------QRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTR----LRRLGK 50
Query: 80 ISNIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAER 139
+ + L G GI HTR++T EVN P V + H + V HNG I N E
Sbjct: 51 VQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEVNAHPHV--SEH--IVVVHNGIIENHEP 106
Query: 140 LRRMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPARITHLMKLTPLSYSLVIME 199
LR + +RG + +D+E+I + G G A + + +L +Y VIM+
Sbjct: 107 LREELKARGYTFVSETDTEVIAHLVNWELKQG---GTLREAVLRAIPQLRG-AYGTVIMD 162
Query: 200 K---DRVFAVRDPYGNRPLCIG 218
D + A R PL IG
Sbjct: 163 SRHPDTLLAARS---GSPLVIG 181
>pdb|2J6H|A Chain A, E. Coli Glucosamine-6-p Synthase In Complex With
Glucose-6p And 5-oxo-l-norleucine
pdb|2J6H|B Chain B, E. Coli Glucosamine-6-p Synthase In Complex With
Glucose-6p And 5-oxo-l-norleucine
pdb|2VF4|X Chain X, E. Coli Glucosamine-6-P Synthase
pdb|2VF5|X Chain X, Glucosamine-6-Phosphate Synthase In Complex With
Glucosamine-6-Phosphate
Length = 608
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 94/202 (46%), Gaps = 26/202 (12%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAG--IVTSEGIDSRRFNIMKGMGM 79
CG+ ++ Q DVA + GL L++RG +SAG +V +EG +R ++ +G
Sbjct: 1 CGIVGAIA------QRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTR----LRRLGK 50
Query: 80 ISNIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAER 139
+ + L G GI HTR++T EVN P V + H + V HNG I N E
Sbjct: 51 VQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEVNAHPHV--SEH--IVVVHNGIIENHEP 106
Query: 140 LRRMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPARITHLMKLTPLSYSLVIME 199
LR + +RG + +D+E+I + G G A + + +L +Y VIM+
Sbjct: 107 LREELKARGYTFVSETDTEVIAHLVNWELKQG---GTLREAVLRAIPQLRG-AYGTVIMD 162
Query: 200 K---DRVFAVRDPYGNRPLCIG 218
D + A R PL IG
Sbjct: 163 SRHPDTLLAAR---SGSPLVIG 181
>pdb|1JXA|A Chain A, Glucosamine 6-Phosphate Synthase With Glucose 6-Phosphate
pdb|1JXA|B Chain B, Glucosamine 6-Phosphate Synthase With Glucose 6-Phosphate
pdb|1JXA|C Chain C, Glucosamine 6-Phosphate Synthase With Glucose 6-Phosphate
pdb|2BPL|A Chain A, E.Coli Glucosamine-6p Synthase In Complex With Fructose-6p
pdb|2BPL|B Chain B, E.Coli Glucosamine-6p Synthase In Complex With Fructose-6p
pdb|2BPL|C Chain C, E.Coli Glucosamine-6p Synthase In Complex With Fructose-6p
Length = 608
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 94/202 (46%), Gaps = 26/202 (12%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAG--IVTSEGIDSRRFNIMKGMGM 79
CG+ ++ Q DVA + GL L++RG +SAG +V +EG +R ++ +G
Sbjct: 1 CGIVGAIA------QRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTR----LRRLGK 50
Query: 80 ISNIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAER 139
+ + L G GI HTR++T EVN P V + H + V HNG I N E
Sbjct: 51 VQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEVNAHPHV--SEH--IVVVHNGIIENHEP 106
Query: 140 LRRMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPARITHLMKLTPLSYSLVIME 199
LR + +RG + +D+E+I + G G A + + +L +Y VIM+
Sbjct: 107 LREELKARGYTFVSETDTEVIAHLVNWELKQG---GTLREAVLRAIPQLRG-AYGTVIMD 162
Query: 200 K---DRVFAVRDPYGNRPLCIG 218
D + A R PL IG
Sbjct: 163 SRHPDTLLAAR---SGSPLVIG 181
>pdb|3OOJ|A Chain A, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|B Chain B, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|C Chain C, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|D Chain D, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|E Chain E, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|F Chain F, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|G Chain G, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|H Chain H, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
Length = 608
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 89/189 (47%), Gaps = 20/189 (10%)
Query: 35 TQIDVAHTICMGLIALQHRGQESAG--IVTSEGIDSRRFNIMKGMGMISNIFNDENLKKL 92
Q DVA + GL L++RG +SAG +V +EG +R ++ +G + + L
Sbjct: 8 AQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTR----LRRLGKVQMLAQAAEEHPL 63
Query: 93 KGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLRRMVLSRGVGLS 152
G GI HTR++T EVN P V + H + V HNG I N E LR + +RG
Sbjct: 64 HGGTGIAHTRWATHGEPSEVNAHPHV--SEH--IVVVHNGIIENHEPLREELKARGYTFV 119
Query: 153 TRSDSELITQALCLNPPDGERDGPDWPARITHLMKLTPLSYSLVIMEK---DRVFAVRDP 209
+ +D+E+I + G G A + + +L +Y VIM+ D + A R
Sbjct: 120 SETDTEVIAHLVNWELKQG---GTLREAVLRAIPQLRG-AYGTVIMDSRHPDTLLAAR-- 173
Query: 210 YGNRPLCIG 218
PL IG
Sbjct: 174 -SGSPLVIG 181
>pdb|3MDN|A Chain A, Structure Of Glutamine Aminotransferase Class-Ii Domain
Protein (Spo2029) From Silicibacter Pomeroyi
pdb|3MDN|B Chain B, Structure Of Glutamine Aminotransferase Class-Ii Domain
Protein (Spo2029) From Silicibacter Pomeroyi
pdb|3MDN|C Chain C, Structure Of Glutamine Aminotransferase Class-Ii Domain
Protein (Spo2029) From Silicibacter Pomeroyi
pdb|3MDN|D Chain D, Structure Of Glutamine Aminotransferase Class-Ii Domain
Protein (Spo2029) From Silicibacter Pomeroyi
Length = 274
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 11/105 (10%)
Query: 47 LIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMISNIF---NDENLK----KLKGNLGIG 99
LIA +E +G ++ G+ +++ +D NL+ ++ L +
Sbjct: 27 LIAQSAHAEECKTATNGDGFGVAWYDARPEPGLYRDVYPAWSDPNLRAVAHHVRSGLFLS 86
Query: 100 HTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLRRMV 144
H R ST + NC PF HNG++ E R+
Sbjct: 87 HVRASTGSCISRNNCHPFAARR----WCFXHNGQVGGFEAFRKQA 127
>pdb|3R6F|A Chain A, Crystal Structure Of A Zinc-Containing Hit Family Protein
From Encephalitozoon Cuniculi
Length = 135
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 196 VIMEKDRVFAVRDPYGNRPLCIGKILPM-KGSQSTVFDFRGQESAGIVTS-----EGIDS 249
+I E DR+FA+ D Y PL G L + K + +++ +E +G++ + +
Sbjct: 20 IIYETDRLFALIDRY---PLSKGHFLVIPKAHHPYLHNYKPEELSGVLDTIRHLVQKFGF 76
Query: 250 RRFNIMKGMGMISNIFN 266
R+NI++ G +F+
Sbjct: 77 ERYNILQNNGNHQEVFH 93
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
Length = 1479
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 68 SRRFNIMKGMGM---ISNIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHG 124
S R I KGM + ++ + D ++ + + I H RYST+ QPF +
Sbjct: 173 SARSIIYKGMFLAEQLTTFYPDLLDERFESDFAIYHQRYSTNTFPTWPLAQPFRM----- 227
Query: 125 VLAVAHNGEI 134
+AHNGEI
Sbjct: 228 ---LAHNGEI 234
>pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|B Chain B, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|C Chain C, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|D Chain D, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|E Chain E, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|F Chain F, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications
Length = 1472
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 68 SRRFNIMKGMGM---ISNIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHG 124
S R I KGM + ++ + D ++ + + I H RYST+ QPF +
Sbjct: 173 SARSIIYKGMFLAEQLTTFYPDLLDERFESDFAIYHQRYSTNTFPTWPLAQPFRM----- 227
Query: 125 VLAVAHNGEI 134
+AHNGEI
Sbjct: 228 ---LAHNGEI 234
>pdb|1Y5M|A Chain A, The Crystal Structure Of Murine 11b-Hydroxysteroid
Dehydrogenase: An Important Therapeutic Target For
Diabetes
pdb|1Y5M|B Chain B, The Crystal Structure Of Murine 11b-Hydroxysteroid
Dehydrogenase: An Important Therapeutic Target For
Diabetes
pdb|1Y5R|A Chain A, The Crystal Structure Of Murine 11b-hydroxysteroid
Dehydrogenase Complexed With Corticosterone
pdb|1Y5R|B Chain B, The Crystal Structure Of Murine 11b-hydroxysteroid
Dehydrogenase Complexed With Corticosterone
Length = 276
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 23 GVFACVSTGTWPTQIDVAHTIC-MGLIALQHRGQESAGIVTSEGIDSRR--FNIMKGMGM 79
G F+ + T + T+++V+ T+C +GLI + +E +GI+ ++ I+KG +
Sbjct: 176 GFFSTIRTELYITKVNVSITLCVLGLIDTETAMKEISGIINAQASPKEECALEIIKGTAL 235
Query: 80 -ISNIFNDEN 88
S ++ D++
Sbjct: 236 RKSEVYYDKS 245
>pdb|3SY8|A Chain A, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|B Chain B, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|C Chain C, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|D Chain D, Crystal Structure Of The Response Regulator Rocr
Length = 400
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 264 IFNDENLKKLKGARYVREVYPGEILEVSRTGIKTVSIVRRPDDKPPAFCIFEYVYFARSD 323
+ DE ++L +++V PG ILE + G + V+I+ A C +
Sbjct: 8 VLEDEPFQRLVAVTALKKVVPGSILEAA-DGKEAVAILESCGHVDIAICDLQM------- 59
Query: 324 SIFEGADSLQYLSVEGLKQAVQLKMKVD 351
S +G L++ S+ G +V L +VD
Sbjct: 60 SGMDGLAFLRHASLSGKVHSVILSSEVD 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,682,873
Number of Sequences: 62578
Number of extensions: 437113
Number of successful extensions: 963
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 917
Number of HSP's gapped (non-prelim): 33
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)