Query psy240
Match_columns 376
No_of_seqs 240 out of 1995
Neff 7.4
Searched_HMMs 29240
Date Sat Aug 17 00:03:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy240.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/240hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ao0_A Glutamine phosphoribosy 100.0 4E-50 1.4E-54 407.5 26.6 277 22-357 1-281 (459)
2 1ecf_A Glutamine phosphoribosy 100.0 2.1E-45 7.1E-50 376.7 25.2 265 22-333 1-273 (504)
3 1xff_A D-fructose-6-, glucosam 100.0 2E-41 6.7E-46 316.1 22.8 216 22-297 1-221 (240)
4 1ct9_A Asparagine synthetase B 100.0 3.3E-39 1.1E-43 334.0 17.9 234 22-368 1-237 (553)
5 2bpl_A Glucosamine--fructose-6 100.0 3.4E-37 1.2E-41 322.7 22.6 217 22-298 1-222 (608)
6 3mdn_A Glutamine aminotransfer 100.0 5.7E-37 2E-41 290.8 13.9 223 21-301 3-258 (274)
7 1te5_A Conserved hypothetical 100.0 2.2E-37 7.5E-42 291.4 -1.5 225 21-296 1-252 (257)
8 1jgt_A Beta-lactam synthetase; 100.0 2.6E-29 8.8E-34 257.9 11.5 205 100-368 40-252 (513)
9 1q15_A CARA; CMPR, (2S,5S)-5-c 100.0 8E-30 2.7E-34 261.1 6.8 203 89-368 20-249 (503)
10 1ea0_A Glutamate synthase [NAD 99.9 2.6E-25 8.9E-30 245.2 18.9 206 38-297 143-400 (1479)
11 1ofd_A Ferredoxin-dependent gl 99.9 8.9E-25 3.1E-29 241.4 20.8 206 38-297 143-399 (1520)
12 1ao0_A Glutamine phosphoribosy 83.0 0.28 9.5E-06 49.0 0.5 39 332-374 413-451 (459)
13 1ecf_A Glutamine phosphoribosy 80.1 0.4 1.4E-05 48.4 0.5 35 332-371 434-468 (504)
14 1ofd_A Ferredoxin-dependent gl 36.8 26 0.00088 39.8 4.4 41 22-63 1-49 (1520)
15 1vk9_A Conserved hypothetical 32.5 19 0.00064 30.1 1.8 28 191-219 28-55 (151)
16 3qh6_A CT296; iron, modeling; 30.5 18 0.00061 29.5 1.3 13 363-375 127-139 (157)
17 1ea0_A Glutamate synthase [NAD 26.7 31 0.0011 39.1 2.8 40 22-62 1-48 (1479)
No 1
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=100.00 E-value=4e-50 Score=407.53 Aligned_cols=277 Identities=33% Similarity=0.572 Sum_probs=233.2
Q ss_pred eEEEEEEeCCCCCCccchHHHHHHHHHHHHhcCCCCcceEEeCCCcceeEEEEecccccccccccccccccCccEEEEEe
Q psy240 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMISNIFNDENLKKLKGNLGIGHT 101 (376)
Q Consensus 22 CGI~G~~~~~~~~~~~~~~~~l~~~l~~l~hRG~D~~Gi~~~~~~~~g~~~~~K~~g~~~~~~~~~~l~~~~~~~~igH~ 101 (376)
|||||+++.. ++...++.||.+|+|||||++|+++.++ +.+.++|++|.++++|++.+++.+.++++|||+
T Consensus 1 CGI~G~~~~~------~~~~~~~~~l~~L~hRG~D~~Gi~~~~~---~~~~~~k~~g~v~~~~~~~~l~~l~g~~~igH~ 71 (459)
T 1ao0_A 1 CGVFGIWGHE------EAPQITYYGLHSLQHRGQEGAGIVATDG---EKLTAHKGQGLITEVFQNGELSKVKGKGAIGHV 71 (459)
T ss_dssp CEEEEEESCT------BHHHHHHHHHHHTGGGCCSEEEEEEECS---SCEEEEEEESCHHHHTTSSCTTTCCBSEEEEEE
T ss_pred CEEEEEECCc------chHHHHHHHHHHHHhcCCCcCCEEEEeC---CeEEEEecCCcHhhhcchhhhhccCCCEEEEEE
Confidence 9999999764 2456788999999999999999999875 378999999999999988888889999999999
Q ss_pred ccccCCCCCCCCCCCceeec-CCCcEEEEEEeeecChHHHHHHHHhCCCCcccCCHHHHHHHHHHhCCCCCCCCCCCHHH
Q psy240 102 RYSTSAASEEVNCQPFVVHT-AHGVLAVAHNGEIVNAERLRRMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPA 180 (376)
Q Consensus 102 R~at~g~~~~~n~qPf~~~~-~~~~~~~v~NGeI~N~~~L~~~L~~~g~~~~~~tDsE~i~~l~~~~~~~~~~~g~~~~~ 180 (376)
||||+|.++..|+|||.... .+++++++|||+|+|+.+||++|...|+.|.+.||||+|+++|.++. ..++.+
T Consensus 72 R~at~g~~~~~n~qP~~~~~~~~g~~~l~hNG~I~N~~~Lr~~L~~~g~~f~~~sDsEvi~~l~~~~~------~~~~~~ 145 (459)
T 1ao0_A 72 RYATAGGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSG------HFTLKD 145 (459)
T ss_dssp ECCC----CGGGSSSEEEBCTTTCCEEEEEEEEETTHHHHHHHHHHTTCCCCSSCHHHHHHHHHHTCC------CSSHHH
T ss_pred ecCCCCCCCccCCCCceeccCCCCcEEEEEEEEecCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhc------cCCHHH
Confidence 99999987778999998643 56889999999999999999999999999999999999999999983 257899
Q ss_pred HHHHHHHhCCcceEEEEEECCEEEEEEcCCCCCCcEEEEecCCCCCCcccccccCCCCceEEE-ecCCccchhhhhhccc
Q psy240 181 RITHLMKLTPLSYSLVIMEKDRVFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVT-SEGIDSRRFNIMKGMG 259 (376)
Q Consensus 181 ~L~~~~~~l~G~fa~v~~d~~~L~~~RD~~G~rPLyy~~~~~~~~~~~~~~~~~~~~~~~~~~-SE~l~~~~~~~~~~~~ 259 (376)
++..++++++|+|||+++|+++|+++||++|.|||||+.. ++.++| ||+ ++
T Consensus 146 a~~~~~~~l~G~fa~~i~d~~~l~~~RD~~G~rPL~~~~~-----------------~~~~~~ASE~-----------~a 197 (459)
T 1ao0_A 146 QIKNSLSMLKGAYAFLIMTETEMIVALDPNGLRPLSIGMM-----------------GDAYVVASET-----------CA 197 (459)
T ss_dssp HHHHHHTTCCEEEEEEEECSSEEEEEECTTCCSCCEEEEE-----------------TTEEEEESST-----------HH
T ss_pred HHHHHHHhhccceEEEEEeCCEEEEEECCCCCCCeEEEec-----------------CCEEEEEECc-----------hH
Confidence 9999999999999999999999999999999999999987 577888 998 34
Q ss_pred ccccccChHHHhhhhCcceEEEeCCCcEEEEecCCeEEEEEecCCCCCCCceeeeeeeecccCCcccccchhhhHhhHHH
Q psy240 260 MISNIFNDENLKKLKGARYVREVYPGEILEVSRTGIKTVSIVRRPDDKPPAFCIFEYVYFARSDSIFEGADSLQYLSVEG 339 (376)
Q Consensus 260 ~~~~~~~~~~l~~~l~~~~i~~l~pG~~l~i~~~~~~~~~y~~~~~~~~~~~~~~e~iy~~~~ds~~~~~~~~~~~~~~~ 339 (376)
+.. ++.+.|++|+|||+++++.++.+..+||.. .+.++|+||||||++|++...+... +..+..
T Consensus 198 l~~-----------~~~~~i~~l~pG~~~~i~~~~~~~~~~~~~---~~~~~c~feyiyfarp~s~~~~~~v--~~~r~~ 261 (459)
T 1ao0_A 198 FDV-----------VGATYLREVEPGEMLIINDEGMKSERFSMN---INRSICSMEYIYFSRPDSNIDGINV--HSARKN 261 (459)
T ss_dssp HHH-----------HTCEEEEECCTTEEEEEETTEEEEEESCSS---CCCCEEHHHHHTTSCTTCEETTEEH--HHHHHH
T ss_pred Hhc-----------CCCceEEEECCCEEEEEECCceEEEecCCC---ccccccceeeeeccCCcchhccHhH--HHHHHH
Confidence 422 346889999999999999999888899953 2357899999999999987665543 345666
Q ss_pred HHHHhhhcc--cccccCCCc
Q psy240 340 LKQAVQLKM--KVDSAEGSF 357 (376)
Q Consensus 340 l~~Av~~rl--~~d~~vg~~ 357 (376)
|-+++...+ ..|+.+++-
T Consensus 262 lg~~La~~~~~~~DvVV~VP 281 (459)
T 1ao0_A 262 LGKMLAQESAVEADVVTGVP 281 (459)
T ss_dssp HHHHHHHHHCCCCSEEECCT
T ss_pred HHHHHHHhcccCCcEEEEEC
Confidence 777777644 456666653
No 2
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=100.00 E-value=2.1e-45 Score=376.73 Aligned_cols=265 Identities=32% Similarity=0.547 Sum_probs=215.3
Q ss_pred eEEEEEEeCCCCCCccchHHHHHHHHHHHHhcCCCCcceEEeCCCcceeEEEEecccccccccccccccccCccEEEEEe
Q psy240 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMISNIFNDENLKKLKGNLGIGHT 101 (376)
Q Consensus 22 CGI~G~~~~~~~~~~~~~~~~l~~~l~~l~hRG~D~~Gi~~~~~~~~g~~~~~K~~g~~~~~~~~~~l~~~~~~~~igH~ 101 (376)
|||||+++... +...++.||.+|+|||||++|+++.+.. +.+.++|++|+++++|.+..++++.++++|||+
T Consensus 1 CGI~G~~~~~~------~~~~l~~~l~~LqhRG~D~aGi~~~~~~--~~~~~~k~~g~v~~vf~~~~~~~l~g~~~igH~ 72 (504)
T 1ecf_A 1 CGIVGIAGVMP------VNQSIYDALTVLQHRGQDAAGIITIDAN--NCFRLRKANGLVSDVFEARHMQRLQGNMGIGHV 72 (504)
T ss_dssp CEEEEEECSSC------CHHHHHHHHHHTGGGCCSEEEEEEECTT--SCEEEEEEESCHHHHCCHHHHHHCCSSEEEEEE
T ss_pred CEEEEEEcChh------HHHHHHHHHHHHHhcCCCcceEEEEcCC--CcEEEEecCCchhhhcCccccccCCCCEEEEEE
Confidence 99999998643 3467889999999999999999998632 378899999999999998888889999999999
Q ss_pred ccccCCCCCCCCCCCceeecCCCcEEEEEEeeecChHHHHHHHHhCC-CCcccCCHHHHHHHHHHhCCCCCC---CCCCC
Q psy240 102 RYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLRRMVLSRG-VGLSTRSDSELITQALCLNPPDGE---RDGPD 177 (376)
Q Consensus 102 R~at~g~~~~~n~qPf~~~~~~~~~~~v~NGeI~N~~~L~~~L~~~g-~~~~~~tDsE~i~~l~~~~~~~~~---~~g~~ 177 (376)
||||+|.++..|+|||...++ ++++++|||+|+|+.+||++|...| +.|.+.||||+|+++|.+++.+.. ....+
T Consensus 73 R~sT~G~~~~~n~QP~~~~~~-~~~~l~hNG~i~N~~eLr~~L~~~g~~~f~s~sDsEvi~~l~~~~~~~~g~~~~~~~~ 151 (504)
T 1ecf_A 73 RYPTAGSSSASEAQPFYVNSP-YGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADN 151 (504)
T ss_dssp ECCBTTBCTTSCCSCEEECSS-SCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHTTCCSSSCCHHH
T ss_pred ccCcCCCCCccccCCeEeccC-CCEEEEEeeeecCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHhcccccccccc
Confidence 999999887789999986333 3499999999999999999998754 678999999999999988753210 00136
Q ss_pred HHHHHHHHHHhCCcceEEEEEE-CCEEEEEEcCCCCCCcEEEEecCCCCCCcccccccCCCC-ceEEE-ecCCccchhhh
Q psy240 178 WPARITHLMKLTPLSYSLVIME-KDRVFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQES-AGIVT-SEGIDSRRFNI 254 (376)
Q Consensus 178 ~~~~L~~~~~~l~G~fa~v~~d-~~~L~~~RD~~G~rPLyy~~~~~~~~~~~~~~~~~~~~~-~~~~~-SE~l~~~~~~~ 254 (376)
+.+++..++++++|+|||++++ +++|+++|||+|+|||||+.... .++ +.++| ||+
T Consensus 152 ~~~a~~~~~~~l~G~fa~v~~~~~~~l~a~RD~~GirPL~~g~~~~-------------~~g~~~~~~ASE~-------- 210 (504)
T 1ecf_A 152 IFAAIAATNRLIRGAYACVAMIIGHGMVAFRDPNGIRPLVLGKRDI-------------DENRTEYMVASES-------- 210 (504)
T ss_dssp HHHHHHHHHHHCCEEEEEEEEETTTEEEEEECTTCCSCCEEEEEEC-------------SSSCEEEEEESST--------
T ss_pred HHHHHHHhhhhcCccceEEEEEcCCeEEEEECCCCCCceEEeeccc-------------CCCceEEEEEeCc--------
Confidence 8899999999999999999987 67999999999999999998510 001 36888 998
Q ss_pred hhcccccccccChHHHhhhhCcceEEEeCCCcEEEEecCCe-EEEEEecCCCCCCCceeeeeeeecccCCcccccchhhh
Q psy240 255 MKGMGMISNIFNDENLKKLKGARYVREVYPGEILEVSRTGI-KTVSIVRRPDDKPPAFCIFEYVYFARSDSIFEGADSLQ 333 (376)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~l~~~~i~~l~pG~~l~i~~~~~-~~~~y~~~~~~~~~~~~~~e~iy~~~~ds~~~~~~~~~ 333 (376)
+++.. ++++.|++|+||++++|+.++. ...+.+. ..+...|+|||+||++|++...+...++
T Consensus 211 ---~al~~-----------~~~~~v~~l~PGe~v~i~~~g~~~~~~~~~---~~~~~~c~fe~iYfarP~s~i~~~~ky~ 273 (504)
T 1ecf_A 211 ---VALDT-----------LGFDFLRDVAPGEAIYITEEGQLFTRQCAD---NPVSNPCLFEYVYFARPDSFIDKISVYS 273 (504)
T ss_dssp ---HHHHH-----------HTCEEEEECCTTEEEEEETTCCEEEEECSS---SCCCCCBHHHHHTTSCTTCEETTEEHHH
T ss_pred ---hHhhc-----------cCccEEEECCCCeEEEEeCCCceecceecC---CCCCCccEEEEehhcChHHHhhhcccHH
Confidence 44432 4578899999999999998884 3333331 2234689999999999999888775443
No 3
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Probab=100.00 E-value=2e-41 Score=316.05 Aligned_cols=216 Identities=27% Similarity=0.443 Sum_probs=187.0
Q ss_pred eEEEEEEeCCCCCCccchHHHHHHHHHHHHhcCCCCcceE-EeCCCcceeEEEEecccccccccccccccccCccEEEEE
Q psy240 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIV-TSEGIDSRRFNIMKGMGMISNIFNDENLKKLKGNLGIGH 100 (376)
Q Consensus 22 CGI~G~~~~~~~~~~~~~~~~l~~~l~~l~hRG~D~~Gi~-~~~~~~~g~~~~~K~~g~~~~~~~~~~l~~~~~~~~igH 100 (376)
|||+|+++... ....+..|+.+|+|||||++|++ +.++ +.+.++|++|.+.+++......++.+.++|||
T Consensus 1 CGI~G~~~~~~------~~~~l~~~l~~l~~RG~D~~Gi~~~~~~---~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH 71 (240)
T 1xff_A 1 CGIVGAIAQRD------VAEILLEGLRRLEYRGYDSAGLAVVDAE---GHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAH 71 (240)
T ss_dssp CEEEEEECSSC------CHHHHHHHHHHHGGGCCSEEEEEEECTT---CCEEEEEEESCHHHHHHHHHHSCCCCSEEEEE
T ss_pred CcEEEEEcCcc------hHHHHHHHHHHHHhcCCCcCCEEEEecC---CcEEEEEcCCcHHHHHhhhhcccCCccEEEEE
Confidence 99999998653 23678899999999999999999 6544 37899999999999887766777889999999
Q ss_pred eccccCCCCCCCCCCCceeecCCCcEEEEEEeeecChHHHHHHHHhCCCCcccCCHHHHHHHHHHhCCCCCCCCCCCHHH
Q psy240 101 TRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLRRMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPA 180 (376)
Q Consensus 101 ~R~at~g~~~~~n~qPf~~~~~~~~~~~v~NGeI~N~~~L~~~L~~~g~~~~~~tDsE~i~~l~~~~~~~~~~~g~~~~~ 180 (376)
+||||+|.++..|+|||.. ++++++|||+|+|+++||++|..+|+.|.+.||||+++++|+.++.+ |.++.+
T Consensus 72 ~R~at~g~~~~~n~qP~~~----~~~~l~hNG~I~N~~~lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~----g~~~~~ 143 (240)
T 1xff_A 72 TRWATHGEPSEVNAHPHVS----EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQ----GGTLRE 143 (240)
T ss_dssp EECCSSSCSSTTTSSCEEE----TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHT----SSCHHH
T ss_pred EeccCCCCCCcccCCCccc----CCEEEEEEEEECCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHhc----CCCHHH
Confidence 9999999877789999984 78999999999999999999999999999999999999999987432 568999
Q ss_pred HHHHHHHhCCcceEEEEEE---CCEEEEEEcCCCCCCcEEEEecCCCCCCcccccccCCCCceEEE-ecCCccchhhhhh
Q psy240 181 RITHLMKLTPLSYSLVIME---KDRVFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVT-SEGIDSRRFNIMK 256 (376)
Q Consensus 181 ~L~~~~~~l~G~fa~v~~d---~~~L~~~RD~~G~rPLyy~~~~~~~~~~~~~~~~~~~~~~~~~~-SE~l~~~~~~~~~ 256 (376)
++..++++|+|+|||+++| +++|+++||+ |||||+.. ++.++| ||+
T Consensus 144 ai~~~~~~l~G~fa~~i~d~~~~~~l~~~Rd~---~PL~~~~~-----------------~~~~~~aSE~---------- 193 (240)
T 1xff_A 144 AVLRAIPQLRGAYGTVIMDSRHPDTLLAARSG---SPLVIGLG-----------------MGENFIASDQ---------- 193 (240)
T ss_dssp HHHHHGGGCCEEEEEEEEETTCTTCEEEEEEB---SCCEEEEC-----------------SSCEEEESSG----------
T ss_pred HHHHHHHhcccceEEEEEecCCCCEEEEEECC---CceEEEEe-----------------CCEEEEEECH----------
Confidence 9999999999999999997 4799999996 99999986 567888 998
Q ss_pred cccccccccChHHHhhhhCcceEEEeCCCcEEEEecCCeEE
Q psy240 257 GMGMISNIFNDENLKKLKGARYVREVYPGEILEVSRTGIKT 297 (376)
Q Consensus 257 ~~~~~~~~~~~~~l~~~l~~~~i~~l~pG~~l~i~~~~~~~ 297 (376)
+++.. + ...|.+|+||++++++.++++.
T Consensus 194 -~al~~-----------~-~~~~~~l~pG~~~~i~~~~~~~ 221 (240)
T 1xff_A 194 -LALLP-----------V-TRRFIFLEEGDIAEITRRSVNI 221 (240)
T ss_dssp -GGTTT-----------T-CSEEEECCTTCEEEECSSCEEE
T ss_pred -HHHHh-----------h-CCeEEEECCCEEEEEECCeEEE
Confidence 34322 2 2458999999999999887654
No 4
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=100.00 E-value=3.3e-39 Score=334.02 Aligned_cols=234 Identities=24% Similarity=0.288 Sum_probs=184.4
Q ss_pred eEEEEEEeCCCCCCccchHHHHHHHHHHHHhcCCCCcceEEeCCCcceeEEEEecccccccccccccccccCccEEEEEe
Q psy240 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMISNIFNDENLKKLKGNLGIGHT 101 (376)
Q Consensus 22 CGI~G~~~~~~~~~~~~~~~~l~~~l~~l~hRG~D~~Gi~~~~~~~~g~~~~~K~~g~~~~~~~~~~l~~~~~~~~igH~ 101 (376)
|||+|+++.... .......+..|+.+|+|||||++|+++.+ .++|||+
T Consensus 1 CGI~G~~~~~~~--~~~~~~~~~~m~~~l~hRGpD~~G~~~~~------------------------------~~~lgh~ 48 (553)
T 1ct9_A 1 ASIFGVFDIKTD--AVELRKKALELSRLMRHRGPDWSGIYASD------------------------------NAILAHE 48 (553)
T ss_dssp CEEEEEESCCSC--HHHHHHHHHHHHHTTGGGCBTEEEEEECS------------------------------SEEEEEE
T ss_pred CEEEEEEcCCCc--chhHHHHHHHHHHHHhccCCCcccEEEEC------------------------------CEEEEEE
Confidence 999999976431 11234667889999999999999998653 4889999
Q ss_pred ccccCCCCCCCCCCCceeecCCCcEEEEEEeeecChHHHHHHHHhCCCCcccCCHHHHHHHHHHhCCCCCCCCCCCHHHH
Q psy240 102 RYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLRRMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPAR 181 (376)
Q Consensus 102 R~at~g~~~~~n~qPf~~~~~~~~~~~v~NGeI~N~~~L~~~L~~~g~~~~~~tDsE~i~~l~~~~~~~~~~~g~~~~~~ 181 (376)
||+|.|.+ .|+|||.. .+++++++|||+|||+.+||++|... +.|.+.||+|+|+++|+++ |.+
T Consensus 49 Rlsi~~~~--~~~QP~~~--~~~~~~lv~NGeIyN~~eLr~~L~~~-~~f~s~sDtEvil~l~~~~-------g~~---- 112 (553)
T 1ct9_A 49 RLSIVDVN--AGAQPLYN--QQKTHVLAVNGEIYNHQALRAEYGDR-YQFQTGSDCEVILALYQEK-------GPE---- 112 (553)
T ss_dssp ECCCSCTT--TCCSSEEC--TTSCEEEEEEEEETTHHHHHHHHTTT-SCCCSCCTTHHHHHHHHHH-------TTT----
T ss_pred eeeeeCCC--CCCCCeEe--CCCCEEEEEEEEEECHHHHHHHHhcc-CccCCCCcHHHHHHHHHHH-------HHH----
Confidence 99999974 68999984 57789999999999999999999776 8899999999999999998 754
Q ss_pred HHHHHHhCCcceEEEEEEC--CEEEEEEcCCCCCCcEEEEecCCCCCCcccccccCCCCceEEE-ecCCccchhhhhhcc
Q psy240 182 ITHLMKLTPLSYSLVIMEK--DRVFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVT-SEGIDSRRFNIMKGM 258 (376)
Q Consensus 182 L~~~~~~l~G~fa~v~~d~--~~L~~~RD~~G~rPLyy~~~~~~~~~~~~~~~~~~~~~~~~~~-SE~l~~~~~~~~~~~ 258 (376)
++++++|+|||+++|. ++|+++||++|+|||||+... ++.++| ||. +
T Consensus 113 ---~l~~l~G~fa~~i~d~~~~~l~~aRD~~G~~PLy~~~~~----------------~~~~~faSe~-----------~ 162 (553)
T 1ct9_A 113 ---FLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDE----------------HGQLYVASEM-----------K 162 (553)
T ss_dssp ---TGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECT----------------TCCEEEESSG-----------G
T ss_pred ---HHHhCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEec----------------CCEEEEeech-----------H
Confidence 4566779999999994 899999999999999999841 467888 998 3
Q ss_pred cccccccChHHHhhhhCcceEEEeCCCcEEEEecCCeEEEEEecCCCCCCCceeeeeeeecccCCcccccchhhhHhhHH
Q psy240 259 GMISNIFNDENLKKLKGARYVREVYPGEILEVSRTGIKTVSIVRRPDDKPPAFCIFEYVYFARSDSIFEGADSLQYLSVE 338 (376)
Q Consensus 259 ~~~~~~~~~~~l~~~l~~~~i~~l~pG~~l~i~~~~~~~~~y~~~~~~~~~~~~~~e~iy~~~~ds~~~~~~~~~~~~~~ 338 (376)
++.. . +++|++|||||++.++. + +..+||+. +-.. . ...++ ..+.+ +.+++
T Consensus 163 al~~-----------~-~~~i~~l~pG~~~~~~~-g-~~~~yw~~-~~~~-------~--~~~~~-~~~~~----~~lr~ 213 (553)
T 1ct9_A 163 ALVP-----------V-CRTIKEFPAGSYLWSQD-G-EIRSYYHR-DWFD-------Y--DAVKD-NVTDK----NELRQ 213 (553)
T ss_dssp GTTT-----------T-CSEEEECCTTEEEETTT-C-SEEECCCC-GGGS-------H--HHHTT-CCCCH----HHHHH
T ss_pred HHHh-----------h-cCCEEEECCCeEEEEcC-C-cEEEeecC-Cccc-------c--ccCCC-HHHHH----HHHHH
Confidence 3322 1 57899999999998754 3 35689963 2000 0 01112 11222 35788
Q ss_pred HHHHHhhhcccccccCCCcccccccccCCC
Q psy240 339 GLKQAVQLKMKVDSAEGSFGHCTACLTGEY 368 (376)
Q Consensus 339 ~l~~Av~~rl~~d~~vg~~~~~~~~~~g~~ 368 (376)
+|.+||++||++|+|||+ .||||.
T Consensus 214 ~L~~aV~~rl~sdvpvgv------~LSGGl 237 (553)
T 1ct9_A 214 ALEDSVKSHLMSDVPYGV------LLSGGL 237 (553)
T ss_dssp HHHHHHHHHTCCSSCEEE------ECCSSH
T ss_pred HHHHHHHHHhcCCCceEE------eCCCCc
Confidence 999999999999999998 778874
No 5
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=100.00 E-value=3.4e-37 Score=322.68 Aligned_cols=217 Identities=27% Similarity=0.440 Sum_probs=187.4
Q ss_pred eEEEEEEeCCCCCCccchHHHHHHHHHHHHhcCCCCcceEEe-CCCcceeEEEEecccccccccccccccccCccEEEEE
Q psy240 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTS-EGIDSRRFNIMKGMGMISNIFNDENLKKLKGNLGIGH 100 (376)
Q Consensus 22 CGI~G~~~~~~~~~~~~~~~~l~~~l~~l~hRG~D~~Gi~~~-~~~~~g~~~~~K~~g~~~~~~~~~~l~~~~~~~~igH 100 (376)
|||+|+++... ..+.+..|+..|+|||||++|+++. ++ +.+.++|++|.++++.......++.++++|||
T Consensus 1 CGI~G~~~~~~------~~~~l~~~l~~l~~RG~D~~Gi~~~~~~---~~~~~~k~~g~~~~l~~~l~~~~~~~~~~igH 71 (608)
T 2bpl_A 1 CGIVGAIAQRD------VAEILLEGLRRLEYRGYDSAGLAVVDAE---GHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAH 71 (608)
T ss_dssp CEEEEEECSSC------CHHHHHHHHHHHGGGCCSEEEEEEECTT---CCEEEEEEESSHHHHHHHHHHSCCCCSEEEEE
T ss_pred CeEEEEEcCCc------hHHHHHHHHHHHHhcCCCcCceEEEecC---CcEEEEeCCCcHHHHHHHhhccCCCCCEEEEE
Confidence 99999998653 2467889999999999999999988 43 37889999999988765444446779999999
Q ss_pred eccccCCCCCCCCCCCceeecCCCcEEEEEEeeecChHHHHHHHHhCCCCcccCCHHHHHHHHHHhCCCCCCCCCCCHHH
Q psy240 101 TRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLRRMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPA 180 (376)
Q Consensus 101 ~R~at~g~~~~~n~qPf~~~~~~~~~~~v~NGeI~N~~~L~~~L~~~g~~~~~~tDsE~i~~l~~~~~~~~~~~g~~~~~ 180 (376)
+||||+|.++..|+|||.. ++++++|||+|+|+.+||++|..+|+.|.+.||||+|+++|++++.+ |.++.+
T Consensus 72 ~R~at~g~~~~~n~qP~~~----~~~~lvhNG~I~N~~~Lr~~L~~~g~~f~s~tDtEvi~~l~~~~~~~----g~~~~~ 143 (608)
T 2bpl_A 72 TRWATHGEPSEVNAHPHVS----EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQ----GGTLRE 143 (608)
T ss_dssp EECCCSSSCCGGGCSCEEE----TTEEEEEEECCTTHHHHHHHHHHHTCCCSCCCHHHHHHHHHHHHHTT----CCCHHH
T ss_pred EccCCCCCCCccCCCCccC----CCEEEEEEEEEeCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhc----CCCHHH
Confidence 9999999877789999984 78999999999999999999998899999999999999999987543 778999
Q ss_pred HHHHHHHhCCcceEEEEEEC---CEEEEEEcCCCCCCcEEEEecCCCCCCcccccccCCCCceEEE-ecCCccchhhhhh
Q psy240 181 RITHLMKLTPLSYSLVIMEK---DRVFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVT-SEGIDSRRFNIMK 256 (376)
Q Consensus 181 ~L~~~~~~l~G~fa~v~~d~---~~L~~~RD~~G~rPLyy~~~~~~~~~~~~~~~~~~~~~~~~~~-SE~l~~~~~~~~~ 256 (376)
++..++++++|+|||+++|+ ++|+++||+ |||||+.. ++.++| ||+
T Consensus 144 av~~~~~~l~G~fa~~i~d~~~~~~l~~aRd~---~PL~~g~~-----------------~~~~~~aSe~---------- 193 (608)
T 2bpl_A 144 AVLRAIPQLRGAYGTVIMDSRHPDTLLAARSG---SPLVIGLG-----------------MGENFIASDQ---------- 193 (608)
T ss_dssp HHHHHGGGCCSSEEEEEEETTCTTCEEEEEEB---SCCEEEEC-----------------SSCEEEESSG----------
T ss_pred HHHHHHHhhcCceEEEEEecCCCCEEEEEECC---CceEEEEe-----------------CCeEEEEech----------
Confidence 99999999999999999995 789999996 99999986 567888 998
Q ss_pred cccccccccChHHHhhhhCcceEEEeCCCcEEEEecCCeEEE
Q psy240 257 GMGMISNIFNDENLKKLKGARYVREVYPGEILEVSRTGIKTV 298 (376)
Q Consensus 257 ~~~~~~~~~~~~~l~~~l~~~~i~~l~pG~~l~i~~~~~~~~ 298 (376)
+++.. . .+.|..|+||++++++++++++.
T Consensus 194 -~al~~-----------~-~~~~~~l~~G~i~~i~~~~~~~~ 222 (608)
T 2bpl_A 194 -LALLP-----------V-TRRFIFLEEGDIAEITRRSVNIF 222 (608)
T ss_dssp -GGTTT-----------T-CCEEEECCTTCEEEECSSCEEEE
T ss_pred -HHHHh-----------c-CCeEEEECCCeEEEEECCeEEEE
Confidence 44422 2 36789999999999999887654
No 6
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}
Probab=100.00 E-value=5.7e-37 Score=290.78 Aligned_cols=223 Identities=19% Similarity=0.216 Sum_probs=150.2
Q ss_pred ceEEEEEEeCCCCCCccchHHHHHHHHHHHHhc--------CCCCcceEEeCCCcceeEEEEeccccccccc---ccccc
Q psy240 21 ECGVFACVSTGTWPTQIDVAHTICMGLIALQHR--------GQESAGIVTSEGIDSRRFNIMKGMGMISNIF---NDENL 89 (376)
Q Consensus 21 MCGI~G~~~~~~~~~~~~~~~~l~~~l~~l~hR--------G~D~~Gi~~~~~~~~g~~~~~K~~g~~~~~~---~~~~l 89 (376)
||+++||.+.+... .++......+|..++++ ++|||||+++++. |+++.+++++ ++.++
T Consensus 3 MCR~~~y~g~~~~l--~~ll~~p~~sL~~qs~~~~~~~~~~~~Dg~GIa~~~~~--------~~~~~~r~~~p~~~~~~l 72 (274)
T 3mdn_A 3 LCRWAAYHGTPIFL--EDVISRPGHSLIAQSAHAEECKTATNGDGFGVAWYDAR--------PEPGLYRDVYPAWSDPNL 72 (274)
T ss_dssp -CCEEEEEEEEEEG--GGTC------------------------CEEEEEESSS--------SSCEEEEESSCGGGCHHH
T ss_pred ccceeeecCCCccH--HHHHhCccccHHHHhhhhhhcCCCCCCCeeEEEEEcCC--------CcEEEEecCCcccCcHHH
Confidence 99999999853211 11112223456666766 7899999998752 2344455544 55555
Q ss_pred ccc----CccEEEEEeccccCCCCCCCCCCCceeecCCCcEEEEEEeeecChHHHHHHHHhCC--CCc---ccCCHHHHH
Q psy240 90 KKL----KGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLRRMVLSRG--VGL---STRSDSELI 160 (376)
Q Consensus 90 ~~~----~~~~~igH~R~at~g~~~~~n~qPf~~~~~~~~~~~v~NGeI~N~~~L~~~L~~~g--~~~---~~~tDsE~i 160 (376)
+.+ .+.++|||+||||.|..+..|+|||.. ++|+|+|||+|+|+.+||++|...| +.| .++||||+|
T Consensus 73 ~~l~~~~~g~~~igHvR~AT~g~~s~~n~qPf~~----g~~~~~HNG~I~N~~~Lr~~L~~~g~~~~f~~~~~~TDSEvi 148 (274)
T 3mdn_A 73 RAVAHHVRSGLFLSHVRASTGSCISRNNCHPFAA----RRWCFMHNGQVGGFEAFRKQADMAIADEFYTYRKGSTDSEVL 148 (274)
T ss_dssp HHHHHHCEEEEEEEEC------------CCCEEE----TTEEEEEEEEETTGGGGHHHHHHTSCHHHHTTCCSCCHHHHH
T ss_pred HHHhhcCCCCEEEEEEccccCCCCcccCCCCccc----CCEEEEEeeEEcCHHHHHHHHHhhCCcceecCCCCCChHHHH
Confidence 544 799999999999999877789999985 7899999999999999999999887 334 789999999
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHhCCcc-----------eEEEEEECCEEEEEEcC-CCCCCcEEEEecCCCCCCc
Q psy240 161 TQALCLNPPDGERDGPDWPARITHLMKLTPLS-----------YSLVIMEKDRVFAVRDP-YGNRPLCIGKILPMKGSQS 228 (376)
Q Consensus 161 ~~l~~~~~~~~~~~g~~~~~~L~~~~~~l~G~-----------fa~v~~d~~~L~~~RD~-~G~rPLyy~~~~~~~~~~~ 228 (376)
+++|..+.. ..++.+++..++++++|. |+++++|+++|+++||+ +|.+||+|+...
T Consensus 149 ~~l~~~~~~-----~~~~~~al~~~l~~l~G~~~~~g~~~~~a~~~~~~d~~~l~a~Rd~~~G~~Pll~~~~~------- 216 (274)
T 3mdn_A 149 FLLALSEGL-----EHDPHGALARAIARLEGLSRAHGTTPHMRLSAAFSDGQTLYAARYSSDHIAPSVYYRYS------- 216 (274)
T ss_dssp HHHHHHTTT-----TTCHHHHHHHHHHHHHHHHHHHSCSSSEEEEEEEECSSCEEEEEEESSSCCCCCEEEEE-------
T ss_pred HHHHHHhhh-----cCCHHHHHHHHHHHHHhHHhhcCcccCceEEEEEEcCCEEEEEECCCCCCCCeEEEEEe-------
Confidence 999977632 347888999999999887 99999999999999998 999997777651
Q ss_pred ccccccCCCCceEEE-ecCCccchhhhhhcccccccccChHHHhhhhCcceEEEeCCCcEEEEecCCeEEEEEe
Q psy240 229 TVFDFRGQESAGIVT-SEGIDSRRFNIMKGMGMISNIFNDENLKKLKGARYVREVYPGEILEVSRTGIKTVSIV 301 (376)
Q Consensus 229 ~~~~~~~~~~~~~~~-SE~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~l~pG~~l~i~~~~~~~~~y~ 301 (376)
..++.++| ||++ .. . .+.|++|+||++++|+++++++.++-
T Consensus 217 -------~~~~~~~vASE~l-----------~~-------------~-~~~~~~v~pGeiv~i~~~~v~~~~~~ 258 (274)
T 3mdn_A 217 -------HARQGWAVVSEPL-----------ET-------------D-EGDWTELRPGRMLTIGAEGAAERDFA 258 (274)
T ss_dssp -------TTTTEEEEESSCC--------------------------C-CSCCEECCSSEEEEEETTEEEEEECC
T ss_pred -------CCCCEEEEEeccc-----------cc-------------C-CceEEEECcCEEEEEeCCeEEEEEcC
Confidence 00167888 9984 11 1 25689999999999999888776544
No 7
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1
Probab=100.00 E-value=2.2e-37 Score=291.38 Aligned_cols=225 Identities=17% Similarity=0.160 Sum_probs=164.3
Q ss_pred ceEEEEEEeCCCCCCccchHHHHHHHHHHHHhcC------CCCcceEEeCCCcceeEEEEeccccccccccccccc--cc
Q psy240 21 ECGVFACVSTGTWPTQIDVAHTICMGLIALQHRG------QESAGIVTSEGIDSRRFNIMKGMGMISNIFNDENLK--KL 92 (376)
Q Consensus 21 MCGI~G~~~~~~~~~~~~~~~~l~~~l~~l~hRG------~D~~Gi~~~~~~~~g~~~~~K~~g~~~~~~~~~~l~--~~ 92 (376)
||||||+++.... + ++.+|.+|+||| +|||||+++++. .+.++|++|.+.+.+....+. .+
T Consensus 1 MCgi~G~~~~~~~----~----~~~gL~~Lq~RG~~~~~~~DgaGIa~~~~~---~~~~~k~~g~v~~~~~~~~l~~~~l 69 (257)
T 1te5_A 1 MCELLGMSANVPT----D----IVFSFTGLMQRGGGTGPHRDGWGIAFYEGR---GVRLFQDPLASVDSEVARLVQRFPI 69 (257)
T ss_dssp -CCEEEEEEEEEE----E----CEEEECCCCCCSSSSSSSBCEEEEEEEETT---EEEEEEECSBSSCCHHHHHHHHSCC
T ss_pred CCeEEEEEcCCCc----c----HHHHHHHHHhccCCCCCCCCeEEEEEEeCC---ceEEEECCCccccchHHHHHhhCCc
Confidence 9999999985321 1 234889999999 799999999764 688999999887654434454 67
Q ss_pred CccEEEEEeccccCCCCCCCCCCCceeecCCCcEEEEEEeeecChHHHHHHHHhCCCCcccCCHHHHHHHHHHhCCCCCC
Q psy240 93 KGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLRRMVLSRGVGLSTRSDSELITQALCLNPPDGE 172 (376)
Q Consensus 93 ~~~~~igH~R~at~g~~~~~n~qPf~~~~~~~~~~~v~NGeI~N~~~L~~~L~~~g~~~~~~tDsE~i~~l~~~~~~~~~ 172 (376)
.+.++|||+||||+|.++..|+|||......++|+|+|||.|.|+++ |.+ ++.|.++||||+|++++.+.+.+..
T Consensus 70 ~g~~~IgHvR~AT~G~~~~~NahPf~~~~~~~~~a~aHNG~i~n~~~-r~~----~~~~~s~TDSEvi~~li~~~~~~~~ 144 (257)
T 1te5_A 70 KSETVIGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQP-KPG----FYRPVGETDSEAAFCDLLNRVRRAF 144 (257)
T ss_dssp EEEEEEEEEEECCCSCCSGGGCSCEEEEETTEEEEEEEESCBSSCCC-CCC----SSCCSSCCHHHHHHHHHHHHHHHHC
T ss_pred cccEEEEEeecCCCCCCCcCcCCCcEecCCCCeEEEEecCcccCchh-hhc----cCCcccCCHHHHHHHHHHHHHHHhc
Confidence 89999999999999988889999999755567899999999999988 643 4568999999999999987643100
Q ss_pred ---CCCCCHHHHHHHHHHhCC--cceEEEEEECCEEEEEEc----------CCCCCCcEEEEecCCCCCCcccccc--cC
Q psy240 173 ---RDGPDWPARITHLMKLTP--LSYSLVIMEKDRVFAVRD----------PYGNRPLCIGKILPMKGSQSTVFDF--RG 235 (376)
Q Consensus 173 ---~~g~~~~~~L~~~~~~l~--G~fa~v~~d~~~L~~~RD----------~~G~rPLyy~~~~~~~~~~~~~~~~--~~ 235 (376)
+.-.++.+++..+.+.++ |.|+++++|++.|+++|| |+|.|||+.... ..+| +.
T Consensus 145 ~~~~~~~a~~~al~~l~~~~~~~G~~n~~l~~g~~l~a~rd~~L~~~~~~~p~g~rpL~~~~~---------~i~~g~~~ 215 (257)
T 1te5_A 145 PEPVPVEVLLPVLISACDEYRKKGVFNALISDGDWLFTFCSSKLAYITRRAPFGPARLKDADL---------TVDFHAET 215 (257)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHTTBCCEEEEESSSCEEEECSSCEEEEEEESSCCCEEEECSSE---------EEEECCCS
T ss_pred CCCchHHHHHHHHHHHHHHHHhcCcEEEEEEcCCEEEEEEcCCceEEeecCCCcccccccccc---------eeeccccc
Confidence 000233444544444444 999999999999999999 666666643100 0000 00
Q ss_pred -CCCceEEE-ecCCccchhhhhhcccccccccChHHHhhhhCcceEEEeCCCcEEEEecCCeE
Q psy240 236 -QESAGIVT-SEGIDSRRFNIMKGMGMISNIFNDENLKKLKGARYVREVYPGEILEVSRTGIK 296 (376)
Q Consensus 236 -~~~~~~~~-SE~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~l~pG~~l~i~~~~~~ 296 (376)
..+..+++ ||+++ . .+.|++|+||++++|+++++.
T Consensus 216 ~~~~~~~vvASE~l~-------------~-------------~~~wr~v~pGe~v~i~~~~~~ 252 (257)
T 1te5_A 216 TPDDVVTVIATEPLT-------------D-------------NENWTLQQSGEWVLWWGGEVL 252 (257)
T ss_dssp STTCEEEEEESSCSS-------------S-------------SSSCEEECTTCEEEEETTEEE
T ss_pred CCCCCEEEEEeCccC-------------C-------------CCCeeEeCCCEEEEEECCEEE
Confidence 11346777 99841 1 356999999999999987754
No 8
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=99.96 E-value=2.6e-29 Score=257.87 Aligned_cols=205 Identities=18% Similarity=0.153 Sum_probs=150.0
Q ss_pred EeccccCCC---CCCCCCCCceeec--CCCcEEEEEEeeecChHHHHHHHHhCCCCcccCCHHHHHHHHHHhCCCCCCCC
Q psy240 100 HTRYSTSAA---SEEVNCQPFVVHT--AHGVLAVAHNGEIVNAERLRRMVLSRGVGLSTRSDSELITQALCLNPPDGERD 174 (376)
Q Consensus 100 H~R~at~g~---~~~~n~qPf~~~~--~~~~~~~v~NGeI~N~~~L~~~L~~~g~~~~~~tDsE~i~~l~~~~~~~~~~~ 174 (376)
|.|+.+.+. .+...+||+...+ ..++++++|||+|||+.+||++| . +.|.+.||||+|+++|++|
T Consensus 40 ~~r~p~~~~~~~~~~~~~QP~~~~~Pf~~~~~~lv~NGeIyN~~eLr~~L--~-~~f~t~sDtEvil~l~~~~------- 109 (513)
T 1jgt_A 40 PQGERSLAATLVHAPSVAPDRAVARSLTGAPTTAVLAGEIYNRDELLSVL--P-AGPAPEGDAELVLRLLERY------- 109 (513)
T ss_dssp TTGGGSCEEEEEECTTSCGGGGEEEECSSSSEEEEEEEEESCHHHHHHTS--C-SSCCCSSHHHHHHHHHHHH-------
T ss_pred ccCCCccccceeeCCccCCCcccCCcCCCCCEEEEEEEEEeCHHHHHHHh--C-CCCCCCCHHHHHHHHHHHH-------
Confidence 555555443 1222368988654 24789999999999999999999 2 7899999999999999998
Q ss_pred CCCHHHHHHHHHHhCCcceEEEEEECCEEEEEEcCCCCCCcEEEEecCCCCCCcccccccCCCCceEEE-ecCCccchhh
Q psy240 175 GPDWPARITHLMKLTPLSYSLVIMEKDRVFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVT-SEGIDSRRFN 253 (376)
Q Consensus 175 g~~~~~~L~~~~~~l~G~fa~v~~d~~~L~~~RD~~G~rPLyy~~~~~~~~~~~~~~~~~~~~~~~~~~-SE~l~~~~~~ 253 (376)
|.+ ++++++|.|||+++|.++|+++||++|+|||||+.. ++.++| ||. +
T Consensus 110 g~~-------~~~~l~G~fA~~i~d~~~l~~aRD~~G~kPLyy~~~-----------------~~~~~faSe~------~ 159 (513)
T 1jgt_A 110 DLH-------AFRLVNGRFATVVRTGDRVLLATDHAGSVPLYTCVA-----------------PGEVRASTEA------K 159 (513)
T ss_dssp GGG-------GGGTCCEEEEEEEEETTEEEEEECTTCCSCCEEEEE-----------------TTEEEEESCH------H
T ss_pred hHH-------hHhhcCeeEEEEEEECCEEEEEECCCCCceeEEEEe-----------------CCEEEEcchH------H
Confidence 743 567778999999999888999999999999999986 678889 897 4
Q ss_pred hhhcccccccccChHHHhhhhCcceEEEeCCCcEEEEe--cCCeEEEEEecCCCCCCCceeeeeeeecccCCcccccchh
Q psy240 254 IMKGMGMISNIFNDENLKKLKGARYVREVYPGEILEVS--RTGIKTVSIVRRPDDKPPAFCIFEYVYFARSDSIFEGADS 331 (376)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~~l~~~~i~~l~pG~~l~i~--~~~~~~~~y~~~~~~~~~~~~~~e~iy~~~~ds~~~~~~~ 331 (376)
+|...+. ...++.......-.+++|++|+|||+++++ .++.+..+||+.+. . .+..+..+
T Consensus 160 aL~~~~~-~~~~~l~~~~~~t~~~~i~~l~pG~~l~i~~~~g~~~~~~yw~~~~-~------------~~~~~~~~---- 221 (513)
T 1jgt_A 160 ALAAHRD-PKGFPLADARRVAGLTGVYQVPAGAVMDIDLGSGTAVTHRTWTPGL-S------------RRILPEGE---- 221 (513)
T ss_dssp HHHTC---CCCCCCTTSEECSSCSSCEECCTTEEEEEETTTTEEEEEECCCCCC-S------------CBCCCHHH----
T ss_pred HHHhccC-cccccccCCCccccccceEEcCCCcEEEEEcCCCCEEEEeecCCcc-c------------ccCCCHHH----
Confidence 4443321 111211100000116899999999999998 56677889997421 1 01122222
Q ss_pred hhHhhHHHHHHHhhhcccccccCCCcccccccccCCC
Q psy240 332 LQYLSVEGLKQAVQLKMKVDSAEGSFGHCTACLTGEY 368 (376)
Q Consensus 332 ~~~~~~~~l~~Av~~rl~~d~~vg~~~~~~~~~~g~~ 368 (376)
..+.++++|.+||++||++|+|||+ .||||.
T Consensus 222 ~~~~l~~~L~~aV~~rl~sd~~vgv------~LSGGl 252 (513)
T 1jgt_A 222 AVAAVRAALEKAVAQRVTPGDTPLV------VLSGGI 252 (513)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCCEE------ECCSSH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEEE------ECCCcH
Confidence 2235789999999999999999998 788874
No 9
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=99.96 E-value=8e-30 Score=261.11 Aligned_cols=203 Identities=13% Similarity=0.139 Sum_probs=153.7
Q ss_pred ccccCc-cEEEEEeccccCCCCCCCCCCCceeecCCCcEEEEEEeeecChH---HHHHHHHhCCCCcccCCHHHHHHHHH
Q psy240 89 LKKLKG-NLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAE---RLRRMVLSRGVGLSTRSDSELITQAL 164 (376)
Q Consensus 89 l~~~~~-~~~igH~R~at~g~~~~~n~qPf~~~~~~~~~~~v~NGeI~N~~---~L~~~L~~~g~~~~~~tDsE~i~~l~ 164 (376)
+..+.| .++|||+||+|.+. .++||+.. .+++++++ |+|||+. +|+++|. | .|.+.||+|+|+++|
T Consensus 20 ~~~~~g~~~~igh~R~~t~~~---~~~QP~~~--~~~~~~l~--GeI~N~~~~~eLr~~l~--g-~f~s~sDtEvil~l~ 89 (503)
T 1q15_A 20 QRDFDGKGEALSNGYLFIEQN---GHYQKCEM--ERGTAYLI--GSLYNRTFLIGLAGVWE--G-EAYLANDAELLALLF 89 (503)
T ss_dssp HTTSCEEEEEETTEEEEEETT---CCEEEEEC--SSSEEEEE--ECCSCHHHHHHHHTTTC--G-GGGGCCHHHHHHHHH
T ss_pred HHhccCCceeEeeeeEEEcCC---CCCCCcCc--CCCeEEEE--EEEeCCCChHHHHHHhh--C-CCCCCChHHHHHHHH
Confidence 455667 89999999999854 48999984 46778888 9999999 9999985 5 788999999999999
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHhCCcceEEEEEECCE-EEEEEcCCCCCCcEEEEecCCCCCCcccccccCCCCce---
Q psy240 165 CLNPPDGERDGPDWPARITHLMKLTPLSYSLVIMEKDR-VFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAG--- 240 (376)
Q Consensus 165 ~~~~~~~~~~g~~~~~~L~~~~~~l~G~fa~v~~d~~~-L~~~RD~~G~rPLyy~~~~~~~~~~~~~~~~~~~~~~~--- 240 (376)
.+| |. .++++++|+|||+++|.++ |+++||++|+|||||+.. ++.
T Consensus 90 ~~~-------g~-------~~l~~l~G~fa~~i~d~~~~l~~aRD~~G~rPL~y~~~-----------------~~~~~t 138 (503)
T 1q15_A 90 TRL-------GA-------NALALAEGDFCFFIDEPNGELTVITESRGFSPVHVVQG-----------------KKAWMT 138 (503)
T ss_dssp HHH-------CG-------GGGGGCCSSEEEEEECTTSCEEEEECSSSSSCCEEEES-----------------SSEEEE
T ss_pred HHH-------HH-------HHHHHcCEEEEEEEEeCCCCEEEEECCCCCeeEEEEEe-----------------CCceec
Confidence 998 74 3567778999999999533 999999999999999985 344
Q ss_pred --------------EEE-ecCCccchhhhhhcccccccccChHHHhhhhCcceEEEeCCCcEEEEecCCe----EEEEEe
Q psy240 241 --------------IVT-SEGIDSRRFNIMKGMGMISNIFNDENLKKLKGARYVREVYPGEILEVSRTGI----KTVSIV 301 (376)
Q Consensus 241 --------------~~~-SE~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~l~pG~~l~i~~~~~----~~~~y~ 301 (376)
++| ||. +++... + ..++.+ + +++|++|+|||+++++.++. ...+||
T Consensus 139 ~~l~l~~~~~~~~~~~faSE~------~al~~~-~---~~~~~T----~-~~~v~~l~pG~~~~i~~~g~~~~~~~~~yw 203 (503)
T 1q15_A 139 NSLKLVTAAEGEGALWFEEEA------LVCQSL-M---RADTYT----P-VKNAQRLKPGAVHVLTHDSEGYSFVESRTL 203 (503)
T ss_dssp SCHHHHHHHHCTTSSCBCCHH------HHTTCS-C---CCTTCC----S-BTTEEECCSSEEEEEEECTTCCEEEEEEES
T ss_pred ccccccccccCCcceEEecch------HHHHhc-c---CCCCCc----c-cCCeEEECCCeEEEEeCCCcccccceeeec
Confidence 778 887 333322 0 011111 1 68999999999999998774 377899
Q ss_pred cCCCCCCCceeeeeeeecccCCcccccchhhhHhhHHHHHHHhhhcccccccCCCcccccccccCCC
Q psy240 302 RRPDDKPPAFCIFEYVYFARSDSIFEGADSLQYLSVEGLKQAVQLKMKVDSAEGSFGHCTACLTGEY 368 (376)
Q Consensus 302 ~~~~~~~~~~~~~e~iy~~~~ds~~~~~~~~~~~~~~~l~~Av~~rl~~d~~vg~~~~~~~~~~g~~ 368 (376)
+.+. .+. ....+.. ...+.++++|.+||++|+++|+|||+ .||||.
T Consensus 204 ~~~~-~~~----------~~~~~~~----~~~~~l~~~L~~aV~~rl~sd~~v~v------~LSGGl 249 (503)
T 1q15_A 204 TTPA-SNQ----------LLALPRE----PLLALIDRYLNAPLEDLAPRFDTVGI------PLSGGL 249 (503)
T ss_dssp CCCC-CCS----------CBCCCHH----HHHHHHHHHHHHHHHHHGGGCSEEEE------ECCSSH
T ss_pred CCcc-ccc----------ccCCCHH----HHHHHHHHHHHHHHHHHHhCCCcEEE------ECCCCH
Confidence 7422 110 0112222 22335789999999999999999998 778874
No 10
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=99.93 E-value=2.6e-25 Score=245.19 Aligned_cols=206 Identities=21% Similarity=0.183 Sum_probs=161.9
Q ss_pred chHHHHHHHHHHHHhcCCC----CcceEEeCCCcceeEEEEeccccccccccc-ccc--cccCccEEEEEeccccCCCCC
Q psy240 38 DVAHTICMGLIALQHRGQE----SAGIVTSEGIDSRRFNIMKGMGMISNIFND-ENL--KKLKGNLGIGHTRYSTSAASE 110 (376)
Q Consensus 38 ~~~~~l~~~l~~l~hRG~D----~~Gi~~~~~~~~g~~~~~K~~g~~~~~~~~-~~l--~~~~~~~~igH~R~at~g~~~ 110 (376)
+....++..+.+++||+++ +++++..+. ++.+||+.|++.++++. ..| +++.+.++|+|+|+||++.++
T Consensus 143 ~~~r~ly~~r~~le~~~~~~~~~~~yi~Sls~----~~~vyKGmgl~~~v~~~y~dL~d~~~~g~~aigH~RySTnt~p~ 218 (1479)
T 1ea0_A 143 QFELDLYIIRRRIEKAVKGEQINDFYICSLSA----RSIIYKGMFLAEQLTTFYPDLLDERFESDFAIYHQRYSTNTFPT 218 (1479)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSCEEEEEES----SEEECCBSSCGGGHHHHCGGGGSTTCCBSEEEEEECCCSCSCCC
T ss_pred hHHHHHHHHHHHHHHhhhhccCCcEEEEEecC----cEEEEecCcCHHHhhhhhhhhcccccceeEEEeeecccCCCCCC
Confidence 4567788899999999974 678877753 78899999999999876 346 578999999999999999999
Q ss_pred CCCCCCceeecCCCcEEEEEEeeecChHHHHHHHHhC----------------C-CCcccCCHHHHHHHHHHhCCCCCCC
Q psy240 111 EVNCQPFVVHTAHGVLAVAHNGEIVNAERLRRMVLSR----------------G-VGLSTRSDSELITQALCLNPPDGER 173 (376)
Q Consensus 111 ~~n~qPf~~~~~~~~~~~v~NGeI~N~~~L~~~L~~~----------------g-~~~~~~tDsE~i~~l~~~~~~~~~~ 173 (376)
+.|+|||. +++|||+|+|...+|+++..+ + ..+.+.||||++.++++.....
T Consensus 219 w~~AQPf~--------~laHNGeInn~~~nr~~m~are~~~~~~~~G~~l~~~~pii~~~~SDSevld~~lelL~~~--- 287 (1479)
T 1ea0_A 219 WPLAQPFR--------MLAHNGEINTVKGNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLSDSGSLDTVFEVMVRA--- 287 (1479)
T ss_dssp STTSSCCS--------SEEEEECCTTHHHHHHHHHHHGGGCCCSTTGGGHHHHCCSSCTTCCHHHHHHHHHHHHHHT---
T ss_pred cccCCccE--------EEEECChhhCHHHHHHHHHHhHhhhcCchhhhhHHhcCCcCCCCCCcHHHHHHHHHHHHHc---
Confidence 99999996 389999999999999987421 1 2267899999995554432111
Q ss_pred CCCCHH-------------------------HHHHHHHHhCCcceEEEEEECCEEEEEEcCCCCCCcEEEEecCCCCCCc
Q psy240 174 DGPDWP-------------------------ARITHLMKLTPLSYSLVIMEKDRVFAVRDPYGNRPLCIGKILPMKGSQS 228 (376)
Q Consensus 174 ~g~~~~-------------------------~~L~~~~~~l~G~fa~v~~d~~~L~~~RD~~G~rPLyy~~~~~~~~~~~ 228 (376)
|.++. +.+..+++.|+|+|++++.|++.|+++|||+|.|||.|+...
T Consensus 288 -g~~l~~A~~~liPeaw~~~~~m~~~~~~fye~~~~~me~~dGp~slv~~dg~~l~a~~DrnGlRPl~~g~t~------- 359 (1479)
T 1ea0_A 288 -GRTAPMVKMMLVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPAALAMTDGRWVVGGMDRNGLRPMRYTITT------- 359 (1479)
T ss_dssp -TCCHHHHHHHHSCCCCC---CCCHHHHHHHHHHHHHCCCCCSSEEEEECSSSEEEEECCTTCCSCCEEEEET-------
T ss_pred -CCCHHHHHHHhCchhhcccccCCHHHHHHHHHHHHhhccCCCcEEEEEEeCCEEEEEecCCCCcceEEEEEC-------
Confidence 44444 444466788999999999999999999999999999999872
Q ss_pred ccccccCCCCceEEE-ecCCccchhhhhhcccccccccChHHHhhhhCcceEE--EeCCCcEEEEecCCeEE
Q psy240 229 TVFDFRGQESAGIVT-SEGIDSRRFNIMKGMGMISNIFNDENLKKLKGARYVR--EVYPGEILEVSRTGIKT 297 (376)
Q Consensus 229 ~~~~~~~~~~~~~~~-SE~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~--~l~pG~~l~i~~~~~~~ 297 (376)
++.+++ ||. +++.. .+.+.++ +|.||+++.|+.+.-++
T Consensus 360 ---------d~~~v~ASE~-----------galdi-----------~~a~~vrkg~l~PGemv~id~~~g~i 400 (1479)
T 1ea0_A 360 ---------DGLIIGGSET-----------GMVKI-----------DETQVIEKGRLGPGEMIAVDLQSGKL 400 (1479)
T ss_dssp ---------TSEEEECSSS-----------TTSCC-----------CGGGEEEEEECCTTCEEEEETTTTEE
T ss_pred ---------CCEEEEEccc-----------ccccC-----------cchheeeccCCCCCeEEEEECCCCeE
Confidence 456788 998 55522 2234455 99999999999764333
No 11
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=99.92 E-value=8.9e-25 Score=241.42 Aligned_cols=206 Identities=20% Similarity=0.098 Sum_probs=162.2
Q ss_pred chHHHHHHHHHHHHhcCCCCcceEEeCCCcceeEEEEeccccccccccc---ccccccCccEEEEEeccccCCCCCCCCC
Q psy240 38 DVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMISNIFND---ENLKKLKGNLGIGHTRYSTSAASEEVNC 114 (376)
Q Consensus 38 ~~~~~l~~~l~~l~hRG~D~~Gi~~~~~~~~g~~~~~K~~g~~~~~~~~---~~l~~~~~~~~igH~R~at~g~~~~~n~ 114 (376)
+....++..+.+++||++++++|+..+. ++.+||+.|++.+++.. ...+.+.+.++|+|+|+||++.+++.|+
T Consensus 143 ~~~r~ly~~r~~le~~~~~~~yI~S~s~----~~~vyKgmgl~~~v~~~y~dL~~~~~~g~~aigH~RySTnt~p~w~~A 218 (1520)
T 1ofd_A 143 ELDRRLYIARSIIGKKLAEDFYVCSFSC----RTIVYKGMVRSIILGEFYLDLKNPGYTSNFAVYHRRFSTNTMPKWPLA 218 (1520)
T ss_dssp HHHHHHHHHHHHHGGGCBTTBEEEEEES----SEEEEEESSCHHHHHHHBHHHHCTTCCBSEEEEEECCCSSSCCCGGGS
T ss_pred hHHHHHHHHHHHHHhhccCCEEEEEecC----cEEEEeCCccHHHHhhhhhhccccccceeEEEEEccccCCCCCCcccC
Confidence 4567788899999999998888888763 78899999999999654 4446889999999999999999999999
Q ss_pred CCceeecCCCcEEEEEEeeecChHHHHHHHHh-----------------CC-CCcccCCHHHHHHHHHHhCCCCCCCCCC
Q psy240 115 QPFVVHTAHGVLAVAHNGEIVNAERLRRMVLS-----------------RG-VGLSTRSDSELITQALCLNPPDGERDGP 176 (376)
Q Consensus 115 qPf~~~~~~~~~~~v~NGeI~N~~~L~~~L~~-----------------~g-~~~~~~tDsE~i~~l~~~~~~~~~~~g~ 176 (376)
|||. +++|||||+|...+|+++.. .+ ..+.+.||||++.++++...+. |.
T Consensus 219 QPf~--------~LaHNGeInt~~~nrnwm~aR~~~~~s~~~~g~~l~~~~p~i~~~~SDSe~ld~~lelL~~~----g~ 286 (1520)
T 1ofd_A 219 QPMR--------LLGHNGEINTLLGNINWMAAREKELEVSGWTKAELEALTPIVNQANSDSYNLDSALELLVRT----GR 286 (1520)
T ss_dssp SCCS--------SEEEEECCTTHHHHHHHHHHHGGGCCCTTCCHHHHHHHCCSCCTTSCHHHHHHHHHHHHHHT----TC
T ss_pred Cchh--------eeEecchhhcHHHHHHHHHHHHHHhcCcccchhhHHhhCCcCCCCCCcHHHHHHHHHHHHhc----CC
Confidence 9997 38999999999999954432 23 3478899999997655522111 55
Q ss_pred CHHHHHH---------------------------HHHHhCCcceEEEEEECCEEEEEEcCCCCCCcEEEEecCCCCCCcc
Q psy240 177 DWPARIT---------------------------HLMKLTPLSYSLVIMEKDRVFAVRDPYGNRPLCIGKILPMKGSQST 229 (376)
Q Consensus 177 ~~~~~L~---------------------------~~~~~l~G~fa~v~~d~~~L~~~RD~~G~rPLyy~~~~~~~~~~~~ 229 (376)
++.+++. .+++.|+|+|++++.|++.++++|||+|.|||.|+...
T Consensus 287 ~l~~A~~~liPeaw~~~~~m~~~~~~~~fyey~~~~me~~dGpaalv~~dg~~l~a~~DrnGlRPl~~~~t~-------- 358 (1520)
T 1ofd_A 287 SPLEAAMILVPEAYKNQPALKDYPEISDFHDYYSGLQEPWDGPALLVFSDGKIVGAGLDRNGLRPARYCITK-------- 358 (1520)
T ss_dssp CHHHHHHHHSCCCCTTCGGGTTCHHHHHHHHHHTTTCCCCCSSEEEEEECSSEEEEEECTTCCSCCEEEEET--------
T ss_pred CHHHHHHHhCcchhcccccccccHHHHHHHHHHHHhcccCCCCEEEEEEeCCEEEEEecCCCCCceEEEEeC--------
Confidence 5555554 33678999999999999999999999999999999972
Q ss_pred cccccCCCCceEEE-ecCCccchhhhhhcccccccccChHHHhhhhCcceEE--EeCCCcEEEEecCCeEE
Q psy240 230 VFDFRGQESAGIVT-SEGIDSRRFNIMKGMGMISNIFNDENLKKLKGARYVR--EVYPGEILEVSRTGIKT 297 (376)
Q Consensus 230 ~~~~~~~~~~~~~~-SE~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~--~l~pG~~l~i~~~~~~~ 297 (376)
++.+++ ||. +++.. .+.+.++ +|.||+++.|+.+.-++
T Consensus 359 --------d~~~v~ASE~-----------galdi-----------~~a~~vrkg~l~PGemv~id~~~g~i 399 (1520)
T 1ofd_A 359 --------DDYIVLGSEA-----------GVVDL-----------PEVDIVEKGRLAPGQMIAVDLAEQKI 399 (1520)
T ss_dssp --------TCCEEEESST-----------TCSCC-----------CGGGEEEEEECCTTCEEEEETTTTEE
T ss_pred --------CCEEEEEccc-----------ccccC-----------cchheeeccCCCCCeEEEEECCCCeE
Confidence 456888 998 55522 2234456 99999999998764333
No 12
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=83.00 E-value=0.28 Score=48.96 Aligned_cols=39 Identities=46% Similarity=0.877 Sum_probs=24.1
Q ss_pred hhHhhHHHHHHHhhhcccccccCCCcccccccccCCCcccCCC
Q psy240 332 LQYLSVEGLKQAVQLKMKVDSAEGSFGHCTACLTGEYPEELDW 374 (376)
Q Consensus 332 ~~~~~~~~l~~Av~~rl~~d~~vg~~~~~~~~~~g~~~~~~~~ 374 (376)
+.++-.+-|..++...-. + +. -++|++||||.||+.++.
T Consensus 413 l~~~s~~~l~~~~~~~~~-~-~~--~~~c~~cf~g~y~~~~~~ 451 (459)
T 1ao0_A 413 LSFLSVEGLLKGIGRKYD-D-SN--CGQCLACFTGKYPTEIYQ 451 (459)
T ss_dssp EEECCHHHHHHHHTCCCS-S-TT--TTEECHHHHSCCSSCCCS
T ss_pred EEEEcHHHHHHHhcCccc-C-cC--CCccceeCCCCccCCCCh
Confidence 333444556667743110 0 11 179999999999998764
No 13
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=80.14 E-value=0.4 Score=48.42 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=22.6
Q ss_pred hhHhhHHHHHHHhhhcccccccCCCcccccccccCCCccc
Q psy240 332 LQYLSVEGLKQAVQLKMKVDSAEGSFGHCTACLTGEYPEE 371 (376)
Q Consensus 332 ~~~~~~~~l~~Av~~rl~~d~~vg~~~~~~~~~~g~~~~~ 371 (376)
+.++..+-|..|+... .| ..-++|++||||.||+.
T Consensus 434 l~~~s~~~l~~~~~~~----~~-~~~~~~~~cf~g~y~~~ 468 (504)
T 1ecf_A 434 LIFQDLNDLIDAVRAE----NP-DIQQFECSVFNGVYVTK 468 (504)
T ss_dssp EEECCHHHHHHHHHTT----CT-TCCCCBCHHHHCCCTTS
T ss_pred EEEEcHHHHHHHhccC----CC-ccCCccceeCCCCCcCC
Confidence 3344445566777442 11 12369999999999987
No 14
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=36.80 E-value=26 Score=39.84 Aligned_cols=41 Identities=27% Similarity=0.457 Sum_probs=29.9
Q ss_pred eEEEEEEeCCCCCCccchHHHHHHHHHHHHhcC--------CCCcceEEe
Q psy240 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRG--------QESAGIVTS 63 (376)
Q Consensus 22 CGI~G~~~~~~~~~~~~~~~~l~~~l~~l~hRG--------~D~~Gi~~~ 63 (376)
|||.++.+.+..+.- ++.+....+|..|.||| -||+||.+.
T Consensus 1 CGvg~va~~~G~~sh-~iv~~al~~L~~m~HRG~~~ad~~tGDGaGil~~ 49 (1520)
T 1ofd_A 1 CGVGFIANLRGKPDH-TLVEQALKALGCMEHRGGCSADNDSGDGAGVMTA 49 (1520)
T ss_dssp CEEEEEECSSSCCBS-HHHHHHHHHHHHTGGGSCBCTTSSSBSCEEEEEE
T ss_pred CeEEEEEEcCCCccH-HHHHHHHHHHHhccccCcccCCCCCCCceeeecc
Confidence 999888886654322 34456678899999999 478888853
No 15
>1vk9_A Conserved hypothetical protein TM1506; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: UNL; 2.70A {Thermotoga maritima} SCOP: c.97.1.3
Probab=32.51 E-value=19 Score=30.14 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=22.1
Q ss_pred cceEEEEEECCEEEEEEcCCCCCCcEEEE
Q psy240 191 LSYSLVIMEKDRVFAVRDPYGNRPLCIGK 219 (376)
Q Consensus 191 G~fa~v~~d~~~L~~~RD~~G~rPLyy~~ 219 (376)
|.|++++.+++.++-..+ .|++|||=..
T Consensus 28 ~~~ScVv~~~~~i~ts~~-rGv~pL~~ll 55 (151)
T 1vk9_A 28 KDLSLLAYSGRSIFESKD-SGLKPVVELF 55 (151)
T ss_dssp TTCSEEEESSSEEEEECC-STTHHHHHHH
T ss_pred CCeeEEEecCCEEEEeCC-cChHHHHHHH
Confidence 889999977778887765 5999997543
No 16
>3qh6_A CT296; iron, modeling; HET: PG4; 1.80A {Chlamydia trachomatis} PDB: 3qh7_A
Probab=30.49 E-value=18 Score=29.52 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=11.6
Q ss_pred cccCCCcccCCCC
Q psy240 363 CLTGEYPEELDWY 375 (376)
Q Consensus 363 ~~~g~~~~~~~~~ 375 (376)
.|+|.||+++++.
T Consensus 127 FF~G~YP~dly~~ 139 (157)
T 3qh6_A 127 FFSGEYPQDVFDW 139 (157)
T ss_dssp EECSSCCTTTCCC
T ss_pred EEeCCCcccccCC
Confidence 7999999999875
No 17
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=26.69 E-value=31 Score=39.10 Aligned_cols=40 Identities=33% Similarity=0.417 Sum_probs=29.1
Q ss_pred eEEEEEEeCCCCCCccchHHHHHHHHHHHHhcCC--------CCcceEE
Q psy240 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQ--------ESAGIVT 62 (376)
Q Consensus 22 CGI~G~~~~~~~~~~~~~~~~l~~~l~~l~hRG~--------D~~Gi~~ 62 (376)
|||.++.+.+..+.. ++.+....+|..|.|||- ||+|+.+
T Consensus 1 CGvg~va~~~G~~sh-~~v~~al~aL~~m~HRG~~~ad~~tGDGaGil~ 48 (1479)
T 1ea0_A 1 CGVGFIAAIDGKPRR-SVVEKGIEALKAVWHRGAVDADGKTGDGAGIHV 48 (1479)
T ss_dssp CEECEEEETTCCCBH-HHHHHHHHHHTSCGGGSCCCTTSSCCSCBCEEE
T ss_pred CeEEEEEEcCCCccH-HHHHHHHHHHHhccccCccCCCCCCCCceeeec
Confidence 999888887654322 344556678888999996 7788874
Done!