RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy240
(376 letters)
>gnl|CDD|238367 cd00715, GPATase_N, Glutamine amidotransferases class-II
(GN-AT)_GPAT- type. This domain is found at the
N-terminus of glutamine phosphoribosylpyrophosphate
(Prpp) amidotransferase (GPATase) . The glutaminase
domain catalyzes amide nitrogen transfer from glutamine
to the appropriate substrate. In this process, glutamine
is hydrolyzed to glutamic acid and ammonia. GPATase
catalyzes the first step in purine biosynthesis, an
amide transfer from glutamine to PRPP, resulting in
phosphoribosylamine, pyrophosphate and glutamate.
GPATase crystalizes as a homotetramer, but can also
exist as a homdimer.
Length = 252
Score = 323 bits (830), Expect = e-110
Identities = 118/306 (38%), Positives = 162/306 (52%), Gaps = 54/306 (17%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMIS 81
CGVF D A +GL ALQHRGQESAGI TS D +RF+ KGMG++S
Sbjct: 1 CGVFGIYG------AEDAARLTYLGLYALQHRGQESAGIATS---DGKRFHTHKGMGLVS 51
Query: 82 NIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLR 141
++F++E L++L GN+ IGH RYST+ +S N QPFVV++ G +A+AHNG +VNA+ LR
Sbjct: 52 DVFDEEKLRRLPGNIAIGHVRYSTAGSSSLENAQPFVVNSPLGGIALAHNGNLVNAKELR 111
Query: 142 RMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPARITHLMKLTPLSYSLVIMEKD 201
+ G T SDSE+I + D I ++ +YSLVIM D
Sbjct: 112 EELEEEGRIFQTTSDSEVILHLIA-----RSLAKDDLFEAIIDALERVKGAYSLVIMTAD 166
Query: 202 RVFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVTSEGIDSRRFNIMKGMGMI 261
+ AVRDP+G RPL +GK+ + +V SE S +I+
Sbjct: 167 GLIAVRDPHGIRPLVLGKL---------------EGDGYVVASE---SCALDII------ 202
Query: 262 SNIFNDENLKKLKGARYVREVYPGEILEVSRTGIKTVSIVRRPDDKPPAFCIFEYVYFAR 321
GA +VR+V PGEI+ + G+++ +R PA CIFEYVYFAR
Sbjct: 203 -------------GAEFVRDVEPGEIVVIDDDGLES---SQRAPKPKPAPCIFEYVYFAR 246
Query: 322 SDSIFE 327
DS+ +
Sbjct: 247 PDSVID 252
>gnl|CDD|233285 TIGR01134, purF, amidophosphoribosyltransferase. Alternate name:
glutamine phosphoribosylpyrophosphate (PRPP)
amidotransferase [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 442
Score = 247 bits (632), Expect = 3e-78
Identities = 114/307 (37%), Positives = 163/307 (53%), Gaps = 55/307 (17%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMIS 81
CGV G + + D A GL ALQHRGQE+AGI S+G + KG G++S
Sbjct: 1 CGVV-----GIYSQEEDAASLTYYGLYALQHRGQEAAGIAVSDG---NKIRTHKGNGLVS 52
Query: 82 NIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLR 141
++F++ +L++LKGN+GIGH RYST+ +S N QPFVV++ G +A+AHNG +VNAE LR
Sbjct: 53 DVFDERHLERLKGNVGIGHVRYSTAGSSSLSNAQPFVVNSPGG-IALAHNGNLVNAEELR 111
Query: 142 RMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPARITHLMKLTPLSYSLVIMEKD 201
+ G +T SDSE++ L + D I ++K +Y+LVIM D
Sbjct: 112 EELEEEGRIFNTTSDSEVLLHLLARER----LEEDDLFEAIARVLKRVRGAYALVIMIGD 167
Query: 202 RVFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVTSEGIDSRRFNIMKGMGMI 261
+ AVRDP+G RPL +GK + +V SE S +I+
Sbjct: 168 GLIAVRDPHGIRPLVLGK----------------RGDGYVVASE---SCALDIL------ 202
Query: 262 SNIFNDENLKKLKGARYVREVYPGEILEVSRTGIKTVSIVRRPDDKPPAFCIFEYVYFAR 321
GA ++R+V PGE + + G+++ R + P A CIFEYVYFAR
Sbjct: 203 -------------GAEFIRDVEPGEAVVIDDGGLES----RLFANTPRAPCIFEYVYFAR 245
Query: 322 SDSIFEG 328
DS+ +G
Sbjct: 246 PDSVIDG 252
Score = 48.8 bits (117), Expect = 3e-06
Identities = 22/44 (50%), Positives = 26/44 (59%), Gaps = 8/44 (18%)
Query: 326 FEGADSLQYLSVEGLKQAVQLKMKVDSAEGSFGHCTACLTGEYP 369
GADSL YLS+EGLK+A+ K+ C AC TGEYP
Sbjct: 407 EIGADSLAYLSLEGLKEAIGKKIS--------DLCLACFTGEYP 442
>gnl|CDD|223112 COG0034, PurF, Glutamine phosphoribosylpyrophosphate
amidotransferase [Nucleotide transport and metabolism].
Length = 470
Score = 247 bits (632), Expect = 7e-78
Identities = 112/312 (35%), Positives = 161/312 (51%), Gaps = 51/312 (16%)
Query: 18 LTHECGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGM 77
CGVF + A GL ALQHRGQE+AGI ++G +RF+ KGM
Sbjct: 1 PREMCGVFGIWG----HKDNNAAQLTYYGLYALQHRGQEAAGIAVADG---KRFHTHKGM 53
Query: 78 GMISNIFNDENL-KKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVN 136
G++S++FN+ +L +KL+GN+GIGH RYST+ +S N QPF V++ G +A+AHNG +VN
Sbjct: 54 GLVSDVFNERDLLRKLQGNVGIGHVRYSTAGSSSIENAQPFYVNSPGGGIALAHNGNLVN 113
Query: 137 AERLRRMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPARITHLMKLTPLSYSLV 196
AE LRR + G +T SDSE++ L E D D + +++ +Y+LV
Sbjct: 114 AEELRRELEEEGAIFNTTSDSEVLLHLLAR-----ELDEDDIFEAVKEVLRRVKGAYALV 168
Query: 197 IMEKDRVFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVTSEGIDSRRFNIMK 256
+ KD + AVRDP G RPL +GK+ + +V SE
Sbjct: 169 ALIKDGLIAVRDPNGIRPLVLGKL---------------GDGFYVVASETC--------- 204
Query: 257 GMGMISNIFNDENLKKLKGARYVREVYPGEILEVSRTGIKTVSIVRRPDDKPPAFCIFEY 316
+ ++ GA +VR+V PGE + ++ G S + A C FEY
Sbjct: 205 ALDIL-------------GAEFVRDVEPGEAVIITIDGDGLESKQVAEPPR-RAPCSFEY 250
Query: 317 VYFARSDSIFEG 328
VYFAR DS+ +G
Sbjct: 251 VYFARPDSVIDG 262
Score = 51.8 bits (125), Expect = 3e-07
Identities = 22/45 (48%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
Query: 328 GADSLQYLSVEGLKQAVQLKMKVDSAEGSFGHCTACLTGEYPEEL 372
GADSL YLS+EGL +A+ F C AC TGEYP L
Sbjct: 419 GADSLAYLSLEGLIKAIGRD------NNDF--CLACFTGEYPTGL 455
>gnl|CDD|235611 PRK05793, PRK05793, amidophosphoribosyltransferase; Provisional.
Length = 469
Score = 230 bits (588), Expect = 2e-71
Identities = 112/312 (35%), Positives = 159/312 (50%), Gaps = 58/312 (18%)
Query: 21 ECGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMI 80
ECGVF S IDVA GL ALQHRGQESAGI S+G + + KGMG++
Sbjct: 14 ECGVFGVFS----KNNIDVASLTYYGLYALQHRGQESAGIAVSDG---EKIKVHKGMGLV 66
Query: 81 SNIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERL 140
S +F+ E LK LKGN IGH RYST+ AS+ N QP V + G +A+AHNG +VNA+ +
Sbjct: 67 SEVFSKEKLKGLKGNSAIGHVRYSTTGASDLDNAQPLVANYKLGSIAIAHNGNLVNADVI 126
Query: 141 RRMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPARITHLMKLTPLSYSLVIMEK 200
R ++ G T DSE+I + + G + ++ SY+LVI+ +
Sbjct: 127 RELLEDGGRIFQTSIDSEVILNLIARSAKKGLEKA------LVDAIQAIKGSYALVILTE 180
Query: 201 DRVFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVTSE--GIDSRRFNIMKGM 258
D++ VRDP+G RPLC+GK+ I++SE +D+
Sbjct: 181 DKLIGVRDPHGIRPLCLGKL----------------GDDYILSSESCALDT--------- 215
Query: 259 GMISNIFNDENLKKLKGARYVREVYPGEILEVSRTGIKTVSIVRRPDDKPPAFCIFEYVY 318
GA ++R+V PGEI+ + GIK+ ++ + C FEY+Y
Sbjct: 216 ---------------IGAEFIRDVEPGEIVIIDEDGIKS---IKFAEKTKCQTCAFEYIY 257
Query: 319 FARSDSIFEGAD 330
FAR DS+ +G
Sbjct: 258 FARPDSVIDGIS 269
Score = 45.0 bits (107), Expect = 4e-05
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 328 GADSLQYLSVEGLKQAVQLKMKVDSAEGSFGHCTACLTGEYP 369
GADSL YLS+EGL +++ G G C C G YP
Sbjct: 424 GADSLGYLSIEGLLESL---------NGDKGFCLGCFNGVYP 456
>gnl|CDD|235998 PRK07349, PRK07349, amidophosphoribosyltransferase; Provisional.
Length = 500
Score = 215 bits (549), Expect = 2e-65
Identities = 112/309 (36%), Positives = 157/309 (50%), Gaps = 53/309 (17%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMIS 81
CGVF + G +VA GL ALQHRGQESAGI T EG + ++ K MG++S
Sbjct: 34 CGVFGVYAPGE-----EVAKLTYFGLYALQHRGQESAGIATFEG---DKVHLHKDMGLVS 85
Query: 82 NIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLR 141
+F+++ L++L G+L +GHTRYST+ +S + N QP V+ T G LA+AHNG +VN LR
Sbjct: 86 QVFDEDILEELPGDLAVGHTRYSTTGSSRKANAQPAVLETRLGPLALAHNGNLVNTVELR 145
Query: 142 RMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPARITHLMKLTPLSYSLVIMEKD 201
+L+RG L+T +DSE+I A+ G DW + ++SLVI +
Sbjct: 146 EELLARGCELTTTTDSEMIAFAIA----QAVDAGKDWLEAAISAFQRCQGAFSLVIGTPE 201
Query: 202 RVFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVTSE--GIDSRRFNIMKGMG 259
+ VRDP G RPL IG L G V + SE +D
Sbjct: 202 GLMGVRDPNGIRPLVIG-TLGEGGPGRYV-----------LASETCALD----------- 238
Query: 260 MISNIFNDENLKKLKGARYVREVYPGEILEVSRTGIKTVSIVRRPDDKPPAFCIFEYVYF 319
+ GA Y+R+V PGE++ ++ G+ + + P K CIFE +YF
Sbjct: 239 -------------IIGAEYLRDVEPGELVWITEGGLSSFHWAQEPQRK---LCIFEMIYF 282
Query: 320 ARSDSIFEG 328
AR DS G
Sbjct: 283 ARPDSRMHG 291
Score = 39.3 bits (92), Expect = 0.002
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 328 GADSLQYLSVEGLKQAVQLKMKVDSAEGSFGHCTACLTGEYP 369
G DSL YLS EG+ +A E C+AC TG+YP
Sbjct: 448 GVDSLAYLSWEGMLEATG--------EDPNSFCSACFTGDYP 481
>gnl|CDD|236384 PRK09123, PRK09123, amidophosphoribosyltransferase; Provisional.
Length = 479
Score = 208 bits (531), Expect = 8e-63
Identities = 104/315 (33%), Positives = 152/315 (48%), Gaps = 68/315 (21%)
Query: 21 ECGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMI 80
ECGVF G D A +GL ALQHRGQE+AGIV+ +G RF+ + MG++
Sbjct: 21 ECGVF-----GILGHP-DAAALTALGLHALQHRGQEAAGIVSFDG---ERFHSERRMGLV 71
Query: 81 SNIFND-ENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAER 139
+ F D + + +L GN IGH RYST+ + N QP G LA+AHNG + NA
Sbjct: 72 GDHFTDADVIARLPGNRAIGHVRYSTTGETILRNVQPLFAELEFGGLAIAHNGNLTNALT 131
Query: 140 LRRMVLSRGVGLSTRSDSE----LITQALCLNPPDGERDGPDWPARITHLMKLTPLSYSL 195
LRR ++ RG + SD+E LI ++ + D R ++ +YSL
Sbjct: 132 LRRELIRRGAIFQSTSDTEVILHLIARSRKASFLD----------RFIDALRQVEGAYSL 181
Query: 196 VIMEKDRVFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVTSE--GIDSRRFN 253
V + ++ RDP G RPL +G++ + + I+ SE +D
Sbjct: 182 VALTNTKLIGARDPLGIRPLVLGEL----------------DGSPILASETCALD----- 220
Query: 254 IMKGMGMISNIFNDENLKKLKGARYVREVYPGEILEVSRTGIKTVSIVRRPDDKPPAFCI 313
+I GA +VR+V PGE++ + G ++ ++ +P FCI
Sbjct: 221 ------II-------------GAEFVRDVEPGELVVIDEDG--SIESIKPFPPQPARFCI 259
Query: 314 FEYVYFARSDSIFEG 328
FEYVYFAR DS+ G
Sbjct: 260 FEYVYFARPDSVVGG 274
Score = 41.0 bits (97), Expect = 7e-04
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 328 GADSLQYLSVEGLKQAVQLKMKVDSAEGSFGHCTACLTGEYPEEL 372
GADSL +LS++GL +AV + + A + C AC TG+YP L
Sbjct: 431 GADSLAFLSIDGLYRAVGEE-GRNPAAPQY--CDACFTGDYPTGL 472
>gnl|CDD|215241 PLN02440, PLN02440, amidophosphoribosyltransferase.
Length = 479
Score = 204 bits (522), Expect = 1e-61
Identities = 106/311 (34%), Positives = 155/311 (49%), Gaps = 60/311 (19%)
Query: 21 ECGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMI 80
ECGV + + +GL ALQHRGQE AGIVT +G R + G G++
Sbjct: 1 ECGVVGIFGDP------EASRLCYLGLHALQHRGQEGAGIVTVDG---NRLQSITGNGLV 51
Query: 81 SNIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERL 140
S++F++ L +L G++ IGH RYST+ AS N QPFV + G + VAHNG +VN E L
Sbjct: 52 SDVFDESKLDQLPGDIAIGHVRYSTAGASSLKNVQPFVANYRFGSIGVAHNGNLVNYEEL 111
Query: 141 RRMVLSRGVGLSTRSDSELITQ--ALCLNPPDGERDGPDWPARITHLMKLTPLSYSLVIM 198
R + G +T SD+E++ A+ P + +RI + +YS+V +
Sbjct: 112 RAKLEENGSIFNTSSDTEVLLHLIAISKARP--------FFSRIVDACEKLKGAYSMVFL 163
Query: 199 EKDRVFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVTSEGIDSRRFNIMKGM 258
+D++ AVRDP+G RPL +G R A + SE +
Sbjct: 164 TEDKLVAVRDPHGFRPLVMG---------------RRSNGAVVFASETC---------AL 199
Query: 259 GMISNIFNDENLKKLKGARYVREVYPGEILEVSR-TGIKTVSIVRRPDDKPPAFCIFEYV 317
+I GA Y REV PGE++ V + G+ + ++ P+ KP CIFE++
Sbjct: 200 DLI-------------GATYEREVNPGEVIVVDKDKGVSSQCLMPHPEPKP---CIFEHI 243
Query: 318 YFARSDSIFEG 328
YFAR +SI G
Sbjct: 244 YFARPNSIVFG 254
Score = 34.7 bits (80), Expect = 0.070
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
Query: 328 GADSLQYLSVEGLKQAVQLKMKVDSAEGSFGHCTACLTGEYP 369
G DSL +L +E LK+++ E S C AC +G+YP
Sbjct: 411 GCDSLAFLPLEDLKKSLG--------EESPRFCYACFSGDYP 444
>gnl|CDD|236113 PRK07847, PRK07847, amidophosphoribosyltransferase; Provisional.
Length = 510
Score = 190 bits (484), Expect = 1e-55
Identities = 100/319 (31%), Positives = 149/319 (46%), Gaps = 71/319 (22%)
Query: 21 ECGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMI 80
ECGVF G W +VA GL ALQHRGQE+AGI S+G + + K +G++
Sbjct: 23 ECGVF-----GVWAPGEEVAKLTYYGLYALQHRGQEAAGIAVSDG---SQILVFKDLGLV 74
Query: 81 SNIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQP-FVVHTAHGVLAVAHNGEIVNAER 139
S +F+++ L L+G++ IGH RYST+ AS N QP F A G +A+ HNG +VN
Sbjct: 75 SQVFDEQTLASLQGHVAIGHCRYSTTGASTWENAQPTFRATAAGGGVALGHNGNLVNTAE 134
Query: 140 LRRMVLSRGVGLSTR-----SDSELITQALCLNPPDGERDGPDWPARITHLMKLTPL--- 191
L RG+ +D++L+T L G ++L P
Sbjct: 135 LAARARDRGLIRGRDPAGATTDTDLVTALLA--------HGAADSTLEQAALELLPTVRG 186
Query: 192 SYSLVIMEKDRVFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVTSE--GIDS 249
++ LV M++ ++A RDP G RPL +G++ E +V SE +D
Sbjct: 187 AFCLVFMDEHTLYAARDPQGVRPLVLGRL----------------ERGWVVASETAALD- 229
Query: 250 RRFNIMKGMGMISNIFNDENLKKLKGARYVREVYPGEILEVSRTGIKTVSIVRRPDDKPP 309
+ GA +VRE+ PGE++ + G+++ R + P
Sbjct: 230 -----------------------IVGASFVREIEPGELIAIDADGLRS----TRFAEPTP 262
Query: 310 AFCIFEYVYFARSDSIFEG 328
C+FEYVY AR D+ G
Sbjct: 263 KGCVFEYVYLARPDTTIAG 281
Score = 40.0 bits (94), Expect = 0.002
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 10/46 (21%)
Query: 328 GADSLQYLSVEGLKQAV-QLKMKVDSAEGSFGHCTACLTGEYPEEL 372
GADSL Y+S++G+ A Q ++ CTAC G YP EL
Sbjct: 438 GADSLGYISLDGMIAATEQPASRL---------CTACFDGVYPIEL 474
>gnl|CDD|181456 PRK08525, PRK08525, amidophosphoribosyltransferase; Provisional.
Length = 445
Score = 181 bits (462), Expect = 3e-53
Identities = 94/316 (29%), Positives = 154/316 (48%), Gaps = 52/316 (16%)
Query: 38 DVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMISNIFNDENLKKLKGNLG 97
+ A L A+QHRGQE++GI S G ++ +KG G+++ +FN++NLK LKG +
Sbjct: 12 NAAKLAYYALFAMQHRGQEASGISVSNG---KKIKTIKGRGLVTQVFNEDNLKTLKGEIA 68
Query: 98 IGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLRRMVLSRGVGLSTRSDS 157
IGH RYST+ ++ QP G +A+ HNG +VN + +R ++ G T D+
Sbjct: 69 IGHNRYSTAGNDSILDAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDT 128
Query: 158 ELITQALCLNPPDGERDGPDWPARITHLMKLTPLSYSLVIMEKDRVFAVRDPYGNRPLCI 217
E + + + + +D RI +K +Y LV++ + ++FA+RDP+G RPL +
Sbjct: 129 ENLIHLIARSKKESLKD------RIIEALKKIIGAYCLVLLSRSKMFAIRDPHGVRPLSL 182
Query: 218 GKILPMKGSQSTVFDFRGQESAGIVTSEGIDSRRFNIMKGMGMISNIFNDENLKKLKGAR 277
G++ ++ IV SE + F+ L GA
Sbjct: 183 GRL---------------KDGGYIVASE----------------TCAFD------LIGAE 205
Query: 278 YVREVYPGE--ILEVSRTGIKTVSIVRRPDDKPPAFCIFEYVYFARSDSIFEGADSLQYL 335
++R+V PGE I E +++ + + P C FEY+YFAR DSI G + +
Sbjct: 206 FIRDVKPGEMLIFEQGNDEFESIQLF----EPTPRICAFEYIYFARPDSIVFGKNVYEVR 261
Query: 336 SVEGLKQAVQLKMKVD 351
G + A + +K D
Sbjct: 262 KKMGEELAKKFPIKAD 277
Score = 35.5 bits (82), Expect = 0.038
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
Query: 326 FEGADSLQYLSVEGLKQAVQLKMKVDSAEGSFGHCTACLTGEYP 369
+ GADSL +LS++ L +++ + K + A G+Y
Sbjct: 409 YIGADSLSFLSIDELTRSIGDERK---------YSLASFDGDYF 443
>gnl|CDD|235984 PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional.
Length = 484
Score = 171 bits (434), Expect = 1e-48
Identities = 95/315 (30%), Positives = 146/315 (46%), Gaps = 56/315 (17%)
Query: 15 VSGLTHECGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIM 74
V L ECGVF G W D A GL +LQHRGQE AGIV+++ +
Sbjct: 5 VKSLNEECGVF-----GIWGHP-DAAQLTYFGLHSLQHRGQEGAGIVSNDNGKLKGH--- 55
Query: 75 KGMGMISNIFND-ENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGE 133
+ +G++S +F D +L KL G IGH RY+T+ ++ N QPF+ H +AHNG
Sbjct: 56 RDLGLLSEVFKDPADLDKLTGQAAIGHVRYATAGSASIENIQPFLFHFHDMQFGLAHNGN 115
Query: 134 IVNAERLRRMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPARITHLMKLTPLSY 193
+ NA LR+ + +G + SD+E++ + P + ++ + +
Sbjct: 116 LTNAVSLRKELEKQGAIFHSSSDTEILMHLI------RRSHNPTFMGKLKEALNTVKGGF 169
Query: 194 SLVIMEKDRVFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVTSEGIDSRRFN 253
+ +++ +D++ A DP G RPL IGK+ + A +V SE + F+
Sbjct: 170 AYLLLTEDKLIAALDPNGFRPLSIGKM---------------KNGAYVVASE---TCAFD 211
Query: 254 IMKGMGMISNIFNDENLKKLKGARYVREVYPGEILEVSRTGIKTVSIVRRPDDKPPAFCI 313
++ GA +VR+V PGEI+ + GI+ D A C
Sbjct: 212 VV-------------------GAEWVRDVQPGEIVIIDDEGIQ---YDSYTTDTQLAICS 249
Query: 314 FEYVYFARSDSIFEG 328
EY+YFAR DS G
Sbjct: 250 MEYIYFARPDSTIHG 264
Score = 41.6 bits (98), Expect = 5e-04
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 328 GADSLQYLSVEGLKQAVQLKMKVDSAEGSFGHCTACLTGEYPEELDWY 375
GADSL YLSV+GL +++ L D+ G G C A G+YP L Y
Sbjct: 421 GADSLTYLSVDGLIESIGL--DTDAPNG--GLCVAYFDGDYPTPLYDY 464
>gnl|CDD|102351 PRK06388, PRK06388, amidophosphoribosyltransferase; Provisional.
Length = 474
Score = 163 bits (414), Expect = 6e-46
Identities = 107/319 (33%), Positives = 162/319 (50%), Gaps = 56/319 (17%)
Query: 36 QIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMISNIFNDENLKKLKGN 95
I+ I L LQHRGQESAG+ D R+ ++ KGMG+++++FN +KG
Sbjct: 28 GINAYSPIITALRTLQHRGQESAGMAV---FDGRKIHLKKGMGLVTDVFNPAT-DPIKGI 83
Query: 96 LGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLRRMVLSRGVGLSTRS 155
+G+GHTRYST+ + N PFV++++ G + ++HNGEIVNA+ LR + G + S
Sbjct: 84 VGVGHTRYSTAGSKGVENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDS 143
Query: 156 DSELITQALCLNPPD-GERDGPDWPARITHLMKLTPLSYSLVIMEKDRVFAVRDPYGNRP 214
D+E++ L N G ++G M+ +Y+ +M DR++A+RDP G RP
Sbjct: 144 DTEVMLAELSRNISKYGLKEG------FERSMERLRGAYACALMINDRLYAIRDPNGIRP 197
Query: 215 LCIGKILPMKGSQSTVFDFRGQESAGIVTSE--GIDSRRFNIMKGMGMISNIFNDENLKK 272
L +GK +F G I+ SE ID+
Sbjct: 198 LVLGK------------NFDGY----IIASESCAIDA----------------------- 218
Query: 273 LKGARYVREVYPGEILEVSRTGIKTVSIVRRPDDKPPAFCIFEYVYFARSDSIFEGADSL 332
L G ++ V PGE++EV G KT I + DK A C+FEYVYF+R DSI +G +
Sbjct: 219 LSGT-TIKNVEPGEVVEVFDNGYKT--IFKLDGDK-VAHCMFEYVYFSRPDSIIDGINVY 274
Query: 333 QYLSVEGLKQAVQLKMKVD 351
Q G++ A + ++ D
Sbjct: 275 QARVRMGMRLAKESPVEAD 293
Score = 47.2 bits (112), Expect = 8e-06
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 8/45 (17%)
Query: 328 GADSLQYLSVEGLKQAVQLKMKVDSAEGSFGHCTACLTGEYPEEL 372
GADSL +LS++GLKQA+ +K E + C CLTG YP ++
Sbjct: 427 GADSLAFLSIDGLKQAIGIK------ENNL--CLGCLTGIYPIDI 463
>gnl|CDD|238212 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase).
The glutaminase domain catalyzes an amide nitrogen
transfer from glutamine to the appropriate substrate. In
this process, glutamine is hydrolyzed to glutamic acid
and ammonia. This domain is related to members of the
Ntn (N-terminal nucleophile) hydrolase superfamily and
is found at the N-terminus of enzymes such as
glucosamine-fructose 6-phosphate synthase (GLMS or
GFAT), glutamine phosphoribosylpyrophosphate (Prpp)
amidotransferase (GPATase), asparagine synthetase B
(AsnB), beta lactam synthetase (beta-LS) and glutamate
synthase (GltS). GLMS catalyzes the formation of
glucosamine 6-phosphate from fructose 6-phosphate and
glutamine in amino sugar synthesis. GPATase catalyzes
the first step in purine biosynthesis, an amide transfer
from glutamine to PRPP, resulting in
phosphoribosylamine, pyrophosphate and glutamate.
Asparagine synthetase B synthesizes asparagine from
aspartate and glutamine. Beta-LS catalyzes the formation
of the beta-lactam ring in the beta-lactamase inhibitor
clavulanic acid. GltS synthesizes L-glutamate from
2-oxoglutarate and L-glutamine. These enzymes are
generally dimers, but GPATase also exists as a
homotetramer.
Length = 220
Score = 155 bits (394), Expect = 1e-45
Identities = 61/200 (30%), Positives = 90/200 (45%), Gaps = 14/200 (7%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMIS 81
CG+F V + + GL AL+HRG + AGI +G + K G +S
Sbjct: 1 CGIFGIVGAD--GAASLLLLLLLRGLAALEHRGPDGAGIAVYDG---DGLFVEKRAGPVS 55
Query: 82 NIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLR 141
++ D + LK + +GH R +T+ E N QPF G +A+ HNGEI N LR
Sbjct: 56 DVALDLLDEPLKSGVALGHVRLATNGLPSEANAQPFRSED--GRIALVHNGEIYNYRELR 113
Query: 142 RMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPARITHLMKLTPLSYSLVIM--E 199
+ +RG SDSE+I L +G + +K ++ + +
Sbjct: 114 EELEARGYRFEGESDSEVILHLLERLGREG-----GLFEAVEDALKRLDGPFAFALWDGK 168
Query: 200 KDRVFAVRDPYGNRPLCIGK 219
DR+FA RD +G RPL G
Sbjct: 169 PDRLFAARDRFGIRPLYYGI 188
Score = 31.3 bits (71), Expect = 0.62
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 202 RVFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVTSEGIDSRRFNIMKGMGMI 261
+F + G L + +L + + RG + AGI +G + K G +
Sbjct: 2 GIFGIVGADGAASLLLLLLLRGLAAL----EHRGPDGAGIAVYDG---DGLFVEKRAGPV 54
Query: 262 SNIFNDENLKKLKG 275
S++ D + LK
Sbjct: 55 SDVALDLLDEPLKS 68
>gnl|CDD|181061 PRK07631, PRK07631, amidophosphoribosyltransferase; Provisional.
Length = 475
Score = 159 bits (405), Expect = 1e-44
Identities = 97/315 (30%), Positives = 155/315 (49%), Gaps = 58/315 (18%)
Query: 15 VSGLTHECGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIM 74
+ GL ECGVF G W + + A GL +LQHRGQE AGIV ++G + +
Sbjct: 5 IKGLNEECGVF-----GIWGHE-EAAQITYYGLHSLQHRGQEGAGIVVTDG---GKLSAH 55
Query: 75 KGMGMISNIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEI 134
KG+G+++ +F + L LKG IGH RY+T+ N QP + + G LA+AHNG +
Sbjct: 56 KGLGLVTEVFQNGELDALKGKAAIGHVRYATAGGGGYENVQPLLFRSQTGSLALAHNGNL 115
Query: 135 VNAERLRRMVLSRGVGLSTRSDSELITQALCLNPPDGERDG-PDWPARITHLMKLTPLSY 193
VNA +L+ + ++G T SD+E++ + +R G P +I + + + +Y
Sbjct: 116 VNATQLKLQLENQGSIFQTTSDTEVLAHLI-------KRSGAPTLKEQIKNALSMLKGAY 168
Query: 194 SLVIMEKDRVFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVTSEGIDSRRFN 253
+ ++M + ++ DP G RPL IG++ A +V SE + F+
Sbjct: 169 AFLLMTETELYVALDPNGLRPLSIGRL----------------GDAYVVASE---TCAFD 209
Query: 254 IMKGMGMISNIFNDENLKKLKGARYVREVYPGEILEVSRTGIKTVSIVRRPDDKPPAFCI 313
++ GA Y REV PGE+L ++ G+++ + + C
Sbjct: 210 VI-------------------GATYEREVEPGELLIINDEGMRSERFAPN---QNRSICS 247
Query: 314 FEYVYFARSDSIFEG 328
EY+YFAR DS +G
Sbjct: 248 MEYIYFARPDSNVDG 262
Score = 45.6 bits (108), Expect = 3e-05
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 328 GADSLQYLSVEGLKQAVQLKMKVDSAEGSFGHCTACLTGEYPEEL 372
GADSL +LS EGL + + + G C AC TG+YP E+
Sbjct: 419 GADSLAFLSQEGLLEGIGR----PYESPNCGQCLACFTGQYPTEI 459
>gnl|CDD|236427 PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional.
Length = 501
Score = 154 bits (392), Expect = 2e-42
Identities = 103/325 (31%), Positives = 152/325 (46%), Gaps = 77/325 (23%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMIS 81
CG+ V V +I L LQHRGQ++AGIVT ID RF + K G++
Sbjct: 2 CGIVGIVGHS------PVNQSIYDALTVLQHRGQDAAGIVT---IDGNRFRLRKANGLVR 52
Query: 82 NIFNDENLKKLKGNLGIGHTRYST--SAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAER 139
++F ++++L+GN+GIGH RY T S++S E QPF V++ +G + +AHNG + NAE
Sbjct: 53 DVFRTRHMRRLQGNMGIGHVRYPTAGSSSSAEA--QPFYVNSPYG-ITLAHNGNLTNAEE 109
Query: 140 LRRMVLS---RGVGLSTRSDSELITQALC--LNPPDGERDGPD--WPARITHLMKLTPLS 192
LR+ + R + +T SDSE++ L G P+ + A + + + +
Sbjct: 110 LRKELFEKDRRHI--NTTSDSEVLLNVFAHELQKFRGLPLTPEDIFAA-VAAVHRRVRGA 166
Query: 193 YSLVIMEKDR-VFAVRDPYGNRPLCIGKILP------MKGSQSTVFDFRGQESAGIVTSE 245
Y++V M + A RDP+G RPL +GK M S+S D G E
Sbjct: 167 YAVVAMIIGHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFE-------- 218
Query: 246 GIDSRRFNIMKGMGMISNIFNDENLKKLKGARYVREVYPGEILEVSRTGIKTVSIVRRPD 305
+VR+V PGE + ++ G + R
Sbjct: 219 --------------------------------FVRDVAPGEAIYITEDG----QLHTRQC 242
Query: 306 DKPPAF--CIFEYVYFARSDSIFEG 328
+ P CIFEYVYFAR DSI +G
Sbjct: 243 AENPKLNPCIFEYVYFARPDSIIDG 267
Score = 32.5 bits (75), Expect = 0.36
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 11/53 (20%)
Query: 328 GADSLQYLSVEGLKQAVQLKMKVDSAEGSFGHCTACLTGEY------PEELDW 374
GAD L Y +E L +AV+ + + F +C GEY E LD
Sbjct: 429 GADGLIYQDLEDLIEAVR---EGNPDIKQF--ECSCFDGEYVTGDIDQEYLDR 476
>gnl|CDD|215851 pfam00310, GATase_2, Glutamine amidotransferases class-II.
Length = 223
Score = 141 bits (358), Expect = 3e-40
Identities = 55/215 (25%), Positives = 81/215 (37%), Gaps = 21/215 (9%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQ------ESAGIVTSEG-----IDSRR 70
CG+ ++ DV L L+HRG + AGI+T RR
Sbjct: 1 CGILGFIAHIKGKASHDVVEDALEALERLEHRGGVGADGNDGAGILTQIPDGFGAPSERR 60
Query: 71 FNIMKGMGMISNIF-NDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVA 129
+++ G S + ++ K L I HTR+ST+ N PF +A
Sbjct: 61 LFVIRKRGEKSIVAEFYLQDERFKSALAIVHTRFSTNGFPSWENAHPFRREG----WVLA 116
Query: 130 HNGEIVNAERLRRMVLSRGVGLSTRSDSELITQAL-----CLNPPDGERDGPDWPARITH 184
HNGEI LR + +R ++ SDSE L PD + + + +
Sbjct: 117 HNGEINTLRGLRNWMRAREGVFNSGSDSEAFDNLLELLVRAGRSPDMDPEERAFYEYLAG 176
Query: 185 LMKLTPLSYSLVIMEKDRVFAVRDPYGNRPLCIGK 219
LM+ +LV + V A D G RP G
Sbjct: 177 LMEPWDGPAALVFTDGRYVGATLDRNGLRPARYGI 211
>gnl|CDD|136048 PRK06781, PRK06781, amidophosphoribosyltransferase; Provisional.
Length = 471
Score = 144 bits (364), Expect = 5e-39
Identities = 96/316 (30%), Positives = 148/316 (46%), Gaps = 56/316 (17%)
Query: 15 VSGLTHECGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIM 74
+ GL ECGVF G W + + A GL +LQHRGQE AGIV + G +
Sbjct: 5 IKGLNEECGVF-----GIWGHE-NAAQVSYYGLHSLQHRGQEGAGIVVNNG---EKIVGH 55
Query: 75 KGMGMISNIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEI 134
KG+G+IS +F+ L+ L G IGH RY+T+ SE N QP + + +A+AHNG +
Sbjct: 56 KGLGLISEVFSRGELEGLNGKSAIGHVRYATAGGSEVANVQPLLFRFSDHSMALAHNGNL 115
Query: 135 VNAERLRRMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPARITHLMKLTPLSYS 194
+NA+ LRR + + G T SD+E++ + + + +++
Sbjct: 116 INAKMLRRELEAEGSIFQTSSDTEVLLHLI------KRSTKDSLIESVKEALNKVKGAFA 169
Query: 195 LVIMEKDRVFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVTSEGIDSRRFNI 254
+++ + + DP G RPL IGK+ A +V SE + F++
Sbjct: 170 YLLLTGNEMIVALDPNGFRPLSIGKM----------------GDAYVVASE---TCAFDV 210
Query: 255 MKGMGMISNIFNDENLKKLKGARYVREVYPGEILEVSRTGIKTVSIVRRPDDKPPAFCIF 314
+ GA Y+R+V PGE+L ++ GI + R ++ A C
Sbjct: 211 V-------------------GATYIRDVEPGELLIINDEGIH---VDRFTNEVDHAICSM 248
Query: 315 EYVYFARSDSIFEGAD 330
EY+YFAR DS G +
Sbjct: 249 EYIYFARPDSNIAGIN 264
Score = 31.5 bits (71), Expect = 0.82
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 328 GADSLQYLSVEGLKQAVQLKMKVDSAEGSFGH-CTACLTGEYPEEL 372
GADSL +LS +GL A+ EG +G C A G+YP L
Sbjct: 419 GADSLTFLSEDGLVDAIGRPY-----EGKYGGLCMAYFNGDYPTAL 459
>gnl|CDD|181395 PRK08341, PRK08341, amidophosphoribosyltransferase; Provisional.
Length = 442
Score = 138 bits (350), Expect = 4e-37
Identities = 97/308 (31%), Positives = 139/308 (45%), Gaps = 61/308 (19%)
Query: 21 ECGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMI 80
+CG+FA S + LIALQHRGQE AGI R +KG G++
Sbjct: 4 KCGIFAAYSE-------NAPKKAYYALIALQHRGQEGAGISVWRH----RIRTVKGHGLV 52
Query: 81 SNIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERL 140
S +F +L +LK NL IGH RYSTS + EV QP V +A+AHNG + N L
Sbjct: 53 SEVFKGGSLSRLKSNLAIGHVRYSTSGSLSEV--QPLEVECCGYKIAIAHNGTLTNFLPL 110
Query: 141 RRMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPARITHLMKLTPLSYSLVIMEK 200
RR SRGV + D+ELI + L D + + + +K +YS+ I+
Sbjct: 111 RRKYESRGVKFRSSVDTELIGISF-LWHYSETGDEFEAMREVFNEVK---GAYSVAILFD 166
Query: 201 DRVFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVTSEGIDSRRFNIMKGMGM 260
++ RDP G RPL G + F ++SA
Sbjct: 167 GKIIVARDPVGFRPLSYG--------EGDGHYFASEDSA--------------------- 197
Query: 261 ISNIFNDENLKKLKGARYVREVYPGEILEVSRTGIKTVSIVRRPDDKPPAFCIFEYVYFA 320
+F +E +R+V+PGE+ VS +++ + R C+FEY+YFA
Sbjct: 198 -LRMFVNE----------IRDVFPGEVFVVSEGEVESKVLAREKH----HHCVFEYIYFA 242
Query: 321 RSDSIFEG 328
R DS+ +G
Sbjct: 243 RPDSVIDG 250
Score = 51.4 bits (123), Expect = 4e-07
Identities = 26/43 (60%), Positives = 28/43 (65%), Gaps = 10/43 (23%)
Query: 328 GADSLQYLSVEGLKQAVQLKMKVDSAEGSFGHCTACLTGEYPE 370
GADSL YLSVEGLK+AV G+ C ACLTGEYPE
Sbjct: 405 GADSLAYLSVEGLKRAV----------GTEDLCMACLTGEYPE 437
>gnl|CDD|223526 COG0449, GlmS, Glucosamine 6-phosphate synthetase, contains
amidotransferase and phosphosugar isomerase domains
[Cell envelope biogenesis, outer membrane].
Length = 597
Score = 90.3 bits (225), Expect = 1e-19
Identities = 55/207 (26%), Positives = 85/207 (41%), Gaps = 36/207 (17%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMIS 81
CG+ + + + GL L++RG +SAGI + N+ K +G IS
Sbjct: 2 CGIVGYIGF-----LREAIDILLEGLKRLEYRGYDSAGIAV---VGDGSLNVRKQVGKIS 53
Query: 82 NIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLR 141
N+ N + L G +GI HTR++T N P H+ G AV HNG I N L+
Sbjct: 54 NLEELLNKEPLIGGVGIAHTRWATHGGPTRANAHP---HSD-GEFAVVHNGIIENFAELK 109
Query: 142 RMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPARITHL------MKLTPLSYSL 195
+ ++G + +D+E+I L + + L +K SY+L
Sbjct: 110 EELEAKGYVFKSDTDTEVIAHLL------------EEIYDTSLLEAVKKVLKRLEGSYAL 157
Query: 196 VIM---EKDRVFAVRDPYGNRPLCIGK 219
+ D + A R PL IG
Sbjct: 158 LCTHSDFPDELVAARK---GSPLVIGV 181
>gnl|CDD|130205 TIGR01135, glmS, glucosamine--fructose-6-phosphate aminotransferase
(isomerizing). The member from Methanococcus jannaschii
contains an intein [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan,
Central intermediary metabolism, Amino sugars].
Length = 607
Score = 86.1 bits (214), Expect = 2e-18
Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 23/202 (11%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMIS 81
CG+ + Q D + GL L++RG +SAGI +D + + K +G +
Sbjct: 1 CGIVGYI------GQRDAVPILLEGLKRLEYRGYDSAGIAV---VDEGKLFVRKAVGKVQ 51
Query: 82 NIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHT-AHGVLAVAHNGEIVNAERL 140
+ N K L G +GIGHTR++T E N P HT G +AV HNG I N L
Sbjct: 52 ELANKLGEKPLPGGVGIGHTRWATHGKPTEENAHP---HTDEGGRIAVVHNGIIENYAEL 108
Query: 141 RRMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPARITHLMKLTPLSYSLVIM-- 198
R + +RG + +D+E+I + R+G D + +K +Y+L ++
Sbjct: 109 REELEARGHVFVSDTDTEVIAHLIEEY----LREGGDLLEAVQKALKQLRGAYALAVLHA 164
Query: 199 -EKDRVFAVRDPYGNRPLCIGK 219
+ + A R G+ PL +G
Sbjct: 165 DHPETLVAAR--SGS-PLIVGL 183
>gnl|CDD|238366 cd00714, GFAT, Glutamine amidotransferases class-II
(Gn-AT)_GFAT-type. This domain is found at the
N-terminus of glucosamine-6P synthase (GlmS, or GFAT in
humans). The glutaminase domain catalyzes amide
nitrogen transfer from glutamine to the appropriate
substrate. In this process, glutamine is hydrolyzed to
glutamic acid and ammonia. In humans, GFAT catalyzes the
first and rate-limiting step of hexosamine metabolism,
the conversion of D-fructose-6P (Fru6P) into
D-glucosamine-6P using L-glutamine as a nitrogen source.
The end product of this pathway, UDP-N-acetyl
glucosamine, is a major building block of the bacterial
peptidoglycan and fungal chitin.
Length = 215
Score = 82.1 bits (204), Expect = 3e-18
Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 35/208 (16%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMIS 81
CG+ + + + GL L++RG +SAGI I ++K +G ++
Sbjct: 1 CGIVGYIGKR------EAVDILLEGLKRLEYRGYDSAGIAV---IGDGSLEVVKAVGKVA 51
Query: 82 NIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHT-AHGVLAVAHNGEIVNAERL 140
N+ K L G++GIGHTR++T +VN P H G +AV HNG I N L
Sbjct: 52 NLEEKLAEKPLSGHVGIGHTRWATHGEPTDVNAHP---HRSCDGEIAVVHNGIIENYAEL 108
Query: 141 RRMVLSRGVGLSTRSDSELITQ--ALCLNPPDGERDGPDWPARITHLMKLTPL----SYS 194
+ + ++G + +D+E+I + G D + +K +Y+
Sbjct: 109 KEELEAKGYKFESETDTEVIAHLIEYYYD------GGLD----LLEAVKKALKRLEGAYA 158
Query: 195 LVIMEK---DRVFAVRDPYGNRPLCIGK 219
L ++ K D + A R+ PL IG
Sbjct: 159 LAVISKDEPDEIVAARN---GSPLVIGI 183
>gnl|CDD|222195 pfam13522, GATase_6, Glutamine amidotransferase domain. This
domain is a class-II glutamine amidotransferase domain
found in a variety of enzymes, such as asparagine
synthetase and glutamine--fructose-6-phosphate
transaminase.
Length = 130
Score = 75.4 bits (186), Expect = 1e-16
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 94 GNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLRRMVLSRGVGLST 153
G + +GH R + SE QP +A G L + HNGEI N LR + ++G +
Sbjct: 10 GGIALGHVRLAIVDLSEA-GAQPM--LSADGRLVLVHNGEIYNFGELREELPAKGHAFRS 66
Query: 154 RSDSELITQALCLNPPDGERDGPDWPARITHLMKLTPLSYSLVIMEKDRVFAVRDPYGNR 213
RSDSE++ E G D R+ + ++++ + +F RD G +
Sbjct: 67 RSDSEVLLALY-------EEWGEDALERLRGMF-----AFAIWDKRRKTLFLARDRLGIK 114
Query: 214 PLCIGKI 220
PL G
Sbjct: 115 PLYYGVT 121
>gnl|CDD|222208 pfam13537, GATase_7, Glutamine amidotransferase domain. This
domain is a class-II glutamine amidotransferase domain
found in a variety of enzymes such as asparagine
synthetase and glutamine-fructose-6-phosphate
transaminase.
Length = 120
Score = 71.0 bits (175), Expect = 3e-15
Identities = 35/124 (28%), Positives = 48/124 (38%), Gaps = 24/124 (19%)
Query: 100 HTRYST--SAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLRRMVLSRGVGLSTRSDS 157
H R S S QP V G + NGEI N LR + ++G T SD+
Sbjct: 1 HRRLSIDDSEGGA----QPMVSE--DGRYVIVFNGEIYNYRELRAELEAKGYRFRTHSDT 54
Query: 158 ELITQALCLNPPDGERDGPDWPARITHLMKLTPLSYSLVIM--EKDRVFAVRDPYGNRPL 215
E+I E G D R+ ++ I + R+F RD +G +PL
Sbjct: 55 EVILHLY-------EEWGEDCLDRLNG-------MFAFAIWDRREGRLFLARDRFGIKPL 100
Query: 216 CIGK 219
GK
Sbjct: 101 YYGK 104
>gnl|CDD|238888 cd01907, GlxB, Glutamine amidotransferases class-II
(Gn-AT)_GlxB-type. GlxB is a glutamine
amidotransferase-like protein of unknown function found
in bacteria and archaea. GlxB has a structural fold
similar to that of other class II glutamine
amidotransferases including glucosamine-fructose
6-phosphate synthase (GLMS or GFAT), glutamine
phosphoribosylpyrophosphate (Prpp) amidotransferase
(GPATase), asparagine synthetase B (AsnB), beta lactam
synthetase (beta-LS) and glutamate synthase (GltS).
The GlxB fold is also somewhat similar to the Ntn
(N-terminal nucleophile) hydrolase fold of the
proteasomal alpha and beta subunits.
Length = 249
Score = 71.9 bits (177), Expect = 2e-14
Identities = 59/225 (26%), Positives = 88/225 (39%), Gaps = 41/225 (18%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRG-QESAG---------IVTSEGIDSRRF 71
CG+F +S P V + L A+Q RG + AG V S G +
Sbjct: 1 CGIFGIMSKDGEP---FVGALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSG---KDM 54
Query: 72 NIMKGMG---MISNIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAV 128
+ KG+G I+ ++ L++ KG I HTR T++A PF + G +AV
Sbjct: 55 EVFKGVGYPEDIARRYD---LEEYKGYHWIAHTRQPTNSAVWWYGAHPFSI----GDIAV 107
Query: 129 AHNGEIVNAERLRRMVLSRGVGLSTRSDSELITQALCL------NPPDGERDGPDWPARI 182
HNGEI N R + G T +D+E+I L L P + + P
Sbjct: 108 VHNGEISNYGSNREYLERFGYKFETETDTEVIAYYLDLLLRKGGLPLEYYKHIIRMPEEE 167
Query: 183 THLMKLTPLSYSLVIME---------KDRVFAVRDPYGNRPLCIG 218
L+ L+Y L ++ D +RD RP +
Sbjct: 168 RELLLALRLTYRLADLDGPFTIIVGTPDGFIVIRDRIKLRPAVVA 212
>gnl|CDD|238364 cd00712, AsnB, Glutamine amidotransferases class-II (GATase)
asparagine synthase_B type. Asparagine synthetase B
catalyses the ATP-dependent conversion of aspartate to
asparagine. This enzyme is a homodimer, with each
monomer composed of a glutaminase domain and a
synthetase domain. The N-terminal glutaminase domain
hydrolyzes glutamine to glutamic acid and ammonia.
Length = 220
Score = 71.0 bits (175), Expect = 2e-14
Identities = 46/199 (23%), Positives = 68/199 (34%), Gaps = 59/199 (29%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMIS 81
CG+ + + AL HRG + +GI EG+
Sbjct: 1 CGIAGIIGLDGASVDRATLERMLD---ALAHRGPDGSGIWIDEGV--------------- 42
Query: 82 NIFNDENLKKLKGNLGIGHTRYS---TSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAE 138
+GH R S S + QP + G L + NGEI N
Sbjct: 43 ---------------ALGHRRLSIIDLSGGA-----QPM--VSEDGRLVLVFNGEIYNYR 80
Query: 139 RLRRMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPARITHLMKLTPLSYSLVI- 197
LR + + G T SD+E+I E G D R+ + M ++ +
Sbjct: 81 ELRAELEALGHRFRTHSDTEVILHLY-------EEWGEDCLERL-NGM------FAFALW 126
Query: 198 -MEKDRVFAVRDPYGNRPL 215
K R+F RD +G +PL
Sbjct: 127 DKRKRRLFLARDRFGIKPL 145
>gnl|CDD|234729 PRK00331, PRK00331, glucosamine--fructose-6-phosphate
aminotransferase; Reviewed.
Length = 604
Score = 70.5 bits (174), Expect = 3e-13
Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 29/183 (15%)
Query: 46 GLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMISNIFNDENLKKLKGNLGIGHTRYST 105
GL L++RG +SAGI +D + K +G ++N+ + L G GIGHTR++T
Sbjct: 20 GLKRLEYRGYDSAGIAV---LDDGGLEVRKAVGKVANLEAKLEEEPLPGTTGIGHTRWAT 76
Query: 106 SAASEEVNCQPFVVHT-AHGVLAVAHNGEIVNAERLRRMVLSRGVGLSTRSDSE----LI 160
E N P HT G +AV HNG I N L+ +L++G + +D+E LI
Sbjct: 77 HGKPTERNAHP---HTDCSGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHLI 133
Query: 161 TQALCLNPPDGERDGPDWPA--RITHLMKLTPLSYSLVIM---EKDRVFAVRDPYGNRPL 215
+ L ++G D R L +L +Y+L ++ E D + A R+ PL
Sbjct: 134 EEEL--------KEGGDLLEAVRKA-LKRLEG-AYALAVIDKDEPDTIVAARN---GSPL 180
Query: 216 CIG 218
IG
Sbjct: 181 VIG 183
>gnl|CDD|238889 cd01908, YafJ, Glutamine amidotransferases class-II
(Gn-AT)_YafJ-type. YafJ is a glutamine
amidotransferase-like protein of unknown function found
in prokaryotes, eukaryotes and archaea. YafJ has a
conserved structural fold similar to those of other
class II glutamine amidotransferases including
lucosamine-fructose 6-phosphate synthase (GLMS or GFAT),
glutamine phosphoribosylpyrophosphate (Prpp)
amidotransferase (GPATase), asparagine synthetase B
(AsnB), beta lactam synthetase (beta-LS) and glutamate
synthase (GltS). The YafJ fold is also somwhat similar
to the Ntn (N-terminal nucleophile) hydrolase fold of
the proteasomal alpha and beta subunits.
Length = 257
Score = 62.0 bits (151), Expect = 5e-11
Identities = 45/186 (24%), Positives = 69/186 (37%), Gaps = 30/186 (16%)
Query: 83 IFNDENLK----KLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAE 138
++D NL+ +K L + H R +T NC PF G AHNG++
Sbjct: 65 AWSDINLESLARPIKSPLVLAHVRAATVGPVSLENCHPFT----RGRWLFAHNGQLDGFR 120
Query: 139 RLRR---MVLSRGVGLSTRSDSE----LITQALCLNPPDGERDGPDWPAR-ITHLMKL-T 189
LRR +L R +T DSE L+ L P + D + + L L
Sbjct: 121 LLRRRLLRLLPRLPVGTT--DSELAFALLLSRLLERDPLDPAELLDAILQTLRELAALAP 178
Query: 190 PLSYSLVIMEKDRVFAVRDP------YGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVT 243
P +L++ + + + A R Y R G + S +T D +V
Sbjct: 179 PGRLNLLLSDGEYLIATRYASAPSLYYLTRRAPFGCARLLFRSVTTPND-----DGVVVA 233
Query: 244 SEGIDS 249
SE +
Sbjct: 234 SEPLTD 239
>gnl|CDD|223444 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino
acid transport and metabolism].
Length = 542
Score = 61.3 bits (149), Expect = 3e-10
Identities = 47/196 (23%), Positives = 71/196 (36%), Gaps = 53/196 (27%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMIS 81
CG+ + + ID I L+HRG + +G+ S
Sbjct: 2 CGIAGIL---NFKNLIDAKSIIEEMTKLLRHRGPDDSGVWIS------------------ 40
Query: 82 NIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLR 141
N +GH R S S QP + G A+ +NGEI N E LR
Sbjct: 41 ------------LNALLGHRRLSIVDLSGGR--QPMI--KEGGKYAIVYNGEIYNVEELR 84
Query: 142 RMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPARITHLMKLTPLSYSLVI--ME 199
+ + G T SD+E+I E G D + + M ++ I
Sbjct: 85 KELREAGYEFRTYSDTEVILTLY-------EEWGEDCVEHL-NGM------FAFAIYDET 130
Query: 200 KDRVFAVRDPYGNRPL 215
+ ++F RDP+G +PL
Sbjct: 131 RQKLFLARDPFGVKPL 146
>gnl|CDD|240349 PTZ00295, PTZ00295, glucosamine-fructose-6-phosphate
aminotransferase; Provisional.
Length = 640
Score = 61.2 bits (149), Expect = 4e-10
Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 34/166 (20%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVT-------------SEGIDS 68
CG+ + D + + G+ LQ+RG +S GI T S+G S
Sbjct: 25 CGIVGYLGNE------DASKILLEGIEILQNRGYDSCGISTISSGGELKTTKYASDGTTS 78
Query: 69 RRFNIMKGMGMISNIFNDENLKKLKGN--LGIGHTRYSTSAASEEVNCQPFVVHTAHGVL 126
I+K E L N +GI HTR++T + N P +
Sbjct: 79 DSIEILK-----------EKLLDSHKNSTIGIAHTRWATHGGKTDENAHPH--CDYKKRI 125
Query: 127 AVAHNGEIVNAERLRRMVLSRGVGLSTRSDSELITQALCLNPPDGE 172
A+ HNG I N L+ ++++G+ + +DSE+I + L GE
Sbjct: 126 ALVHNGTIENYVELKSELIAKGIKFRSETDSEVIANLIGLELDQGE 171
>gnl|CDD|215531 PLN02981, PLN02981, glucosamine:fructose-6-phosphate
aminotransferase.
Length = 680
Score = 58.2 bits (141), Expect = 3e-09
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 17/153 (11%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFN--IMKGMGM 79
CG+FA ++ + + + GL L++RG +SAGI + + + G
Sbjct: 2 CGIFAYLNYNVPRERRFILEVLFNGLRRLEYRGYDSAGIAIDNDPSLESSSPLVFREEGK 61
Query: 80 ISN----IFNDENLKKLKGNL------GIGHTRYSTSAASEEVNCQPFVVHT--AHGVLA 127
I + ++ + L +L GI HTR++T N P +
Sbjct: 62 IESLVRSVYEEVAETDLNLDLVFENHAGIAHTRWATHGPPAPRNSHP---QSSGPGNEFL 118
Query: 128 VAHNGEIVNAERLRRMVLSRGVGLSTRSDSELI 160
V HNG I N E L+ +L G + +D+E+I
Sbjct: 119 VVHNGIITNYEVLKETLLRHGFTFESDTDTEVI 151
>gnl|CDD|173585 PTZ00394, PTZ00394, glucosamine-fructose-6-phosphate
aminotransferase; Provisional.
Length = 670
Score = 56.8 bits (137), Expect = 9e-09
Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 25/163 (15%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFN--------- 72
CG+F + T + + + G+ +++RG +SAG+ I S + +
Sbjct: 2 CGIFGYANHNVPRTVEQILNVLLDGIQKVEYRGYDSAGLAIDANIGSEKEDGTAASAPTP 61
Query: 73 ---IMKGMGMISN----IFNDENL-------KKLKGNLGIGHTRYSTSAASEEVNCQPFV 118
+++ +G IS +F++ ++GI HTR++T E NC P
Sbjct: 62 RPCVVRSVGNISQLREKVFSEAVAATLPPMDATTSHHVGIAHTRWATHGGVCERNCHP-- 119
Query: 119 VHTAHGVLAVAHNGEIVNAERLRRMVLSRGVGLSTRSDSELIT 161
+ +G + HNG + N L+ ++ G S+ +D+E+I+
Sbjct: 120 QQSNNGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEVIS 162
>gnl|CDD|233454 TIGR01536, asn_synth_AEB, asparagine synthase
(glutamine-hydrolyzing). This model describes the
glutamine-hydrolysing asparagine synthase. A poorly
conserved C-terminal extension was removed from the
model. Bacterial members of the family tend to have a
long, poorly conserved insert lacking from archaeal and
eukaryotic sequences. Multiple isozymes have been
demonstrated, such as in Bacillus subtilis. Long-branch
members of the phylogenetic tree (which typically were
also second or third candidate members from their
genomes) were removed from the seed alignment and score
below trusted cutoff [Amino acid biosynthesis, Aspartate
family].
Length = 466
Score = 52.7 bits (127), Expect = 1e-07
Identities = 33/138 (23%), Positives = 51/138 (36%), Gaps = 32/138 (23%)
Query: 86 DENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLRRMVL 145
++ GN +GH R + S QP + NGEI N E LR +
Sbjct: 32 ASGIEYKDGNAILGHRRLAIIDLSGGA--QPM--SNEGKTYVIVFNGEIYNHEELREELE 87
Query: 146 SRGVGLSTRSDSELITQAL------CLNPPDGERDGPDWPARITHLMKLTPLSYSLVIM- 198
++G T SD+E+I C++ DG ++ +
Sbjct: 88 AKGYTFQTDSDTEVILHLYEEWGEECVDRLDGM--------------------FAFALWD 127
Query: 199 -EKDRVFAVRDPYGNRPL 215
EK +F RD +G +PL
Sbjct: 128 SEKGELFLARDRFGIKPL 145
>gnl|CDD|223145 COG0067, GltB, Glutamate synthase domain 1 [Amino acid transport
and metabolism].
Length = 371
Score = 52.3 bits (126), Expect = 2e-07
Identities = 35/169 (20%), Positives = 60/169 (35%), Gaps = 30/169 (17%)
Query: 68 SRRFNIMKGMGM---ISNIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHG 124
S R + KG+G+ ++ + D + ++ K + + HTR+ST+ PF +
Sbjct: 173 SSRTIVYKGVGLPEDVAEFYLDLDDERYKSAIALVHTRFSTNTFPSWPLAHPFRL----- 227
Query: 125 VLAVAHNGEIVNAERLRRMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPARITH 184
+ HNGEI R + +RG + +D E++ + L P R G D +
Sbjct: 228 ---LVHNGEINTYGGNRNWLEARGYKFESPTDGEVLAKLL----PILMRGGSDSASLDNA 280
Query: 185 LMKLTPLSYSLV---------------IMEKDRVFAVRDPYGNRPLCIG 218
L L L M+ + D G
Sbjct: 281 LELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDG 329
>gnl|CDD|223199 COG0121, COG0121, Predicted glutamine amidotransferase [General
function prediction only].
Length = 252
Score = 44.3 bits (105), Expect = 4e-05
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 83 IFNDENLK----KLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAE 138
+ D L +K L I H R +T N PF + AHNG++ +
Sbjct: 55 AWEDIALLVLAYPIKSELVIAHVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFK 114
Query: 139 RL 140
L
Sbjct: 115 LL 116
>gnl|CDD|236513 PRK09431, asnB, asparagine synthetase B; Provisional.
Length = 554
Score = 43.4 bits (103), Expect = 1e-04
Identities = 47/211 (22%), Positives = 67/211 (31%), Gaps = 75/211 (35%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMIS 81
CG+F + T + + ++HRG + +GI S+
Sbjct: 2 CGIFGILDIKTDADE--LRKKALEMSRLMRHRGPDWSGIYASD----------------- 42
Query: 82 NIFNDENLKKLKGNLGIGHTRYS----TSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNA 137
LG H R S A QP ++ G +A NGEI N
Sbjct: 43 -----------NAILG--HERLSIVDVNGGA------QP--LYNEDGTHVLAVNGEIYNH 81
Query: 138 ERLRRMVLSRGVGLSTRSDSELITQAL-------CLNPPDGERDGPDWPARITHLMKLTP 190
+ LR + + T SD E+I AL L+ DG
Sbjct: 82 QELRAELGDK-YAFQTGSDCEVIL-ALYQEKGPDFLDDLDGM------------------ 121
Query: 191 LSYSLVIM--EKDRVFAVRDPYGNRPLCIGK 219
++ + EKD RDP G PL G
Sbjct: 122 --FAFALYDSEKDAYLIARDPIGIIPLYYGY 150
>gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein;
Provisional.
Length = 586
Score = 40.9 bits (96), Expect = 8e-04
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 17/106 (16%)
Query: 115 QPFVVHTAHGVLAVAHNGEIVNAERLRRMVLSRGVGLSTRSDSELITQALCLNPPDGERD 174
QP + +A+ NGEI N +R + G S+ SD E+I L G +D
Sbjct: 66 QPLLD--DDETVALMQNGEIYNHWEIRPELEKEGYKFSSNSDCEII---GHLYKEYGPKD 120
Query: 175 GPDWPARITHLMKLTPLSYSLVI--MEKDRVFAVRDPYGNRPLCIG 218
+ HL + ++ VI M+ + FA RD G PL IG
Sbjct: 121 FWN------HLDGM----FATVIYDMKTNTFFAARDHIGIIPLYIG 156
>gnl|CDD|234108 TIGR03104, trio_amidotrans, asparagine synthase family
amidotransferase. Members of this protein family are
closely related to several isoforms of asparagine
synthetase (glutamine amidotransferase) and typically
have been given this name in genome annotation to date.
Each is part of a conserved three-gene cassette sparsely
distributed across at least twenty different species
known so far, including alpha, beta, and gamma
Proteobacteria, Mycobacterium, and Prosthecochloris,
which is a member of the Chlorobi. The other two members
of the cassette are a probable protease and a member of
the GNAT family of acetyltransferases.
Length = 589
Score = 40.5 bits (95), Expect = 0.001
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 25/127 (19%)
Query: 94 GNLGIGHTRYST---SAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLRRMVLSRGVG 150
G + +GH R S AS+ QP +V G LA+ NG I N LR + + G
Sbjct: 41 GPVALGHRRLKIIDLSEASQ----QP-MVDPELG-LALVFNGCIYNYRELRAELEALGYR 94
Query: 151 LSTRSDSELITQALCLNPPDGERDGPDWPARITHLMKLTPLSYSLVIMEKD--RVFAVRD 208
+ D+E+I +A G D +R + M ++ I E+D R+ RD
Sbjct: 95 FFSDGDTEVILKAY-------HAWGRDCVSRF-NGM------FAFAIWERDSGRLLLARD 140
Query: 209 PYGNRPL 215
G +PL
Sbjct: 141 RLGIKPL 147
>gnl|CDD|238365 cd00713, GltS, Glutamine amidotransferases class-II (Gn-AT),
glutamate synthase (GltS)-type. GltS is a homodimer that
synthesizes L-glutamate from 2-oxoglutarate and
L-glutamine, an important step in ammonia assimilation
in bacteria, cyanobacteria and plants. The N-terminal
glutaminase domain catalyzes the hydrolysis of glutamine
to glutamic acid and ammonia, and has a fold similar to
that of other glutamine amidotransferases such as
glucosamine-fructose 6-phosphate synthase (GLMS or
GFAT), glutamine phosphoribosylpyrophosphate (Prpp)
amidotransferase (GPATase), asparagine synthetase B
(AsnB), and beta lactam synthetase (beta-LS), as well as
the Ntn hydrolase folds of the proteasomal alpha and
beta subunits.
Length = 413
Score = 36.3 bits (85), Expect = 0.020
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 29/94 (30%)
Query: 68 SRRFNIMKGMGM---ISNIFNDENLKKLKGNLGIGHTRYST------SAASEEVNCQPFV 118
S R + KGM + + + D + + + H+R+ST A QPF
Sbjct: 172 SSRTIVYKGMLLPEQLGQFYPDLQDPRFESAFALVHSRFSTNTFPSWPLA------QPFR 225
Query: 119 VHTAHGVLAVAHNGEI------VNAERLRRMVLS 146
+AHNGEI N R R +L
Sbjct: 226 Y--------LAHNGEINTIRGNRNWMRAREGLLK 251
>gnl|CDD|132152 TIGR03108, eps_aminotran_1, exosortase A system-associated
amidotransferase 1. The predicted protein-sorting
transpeptidase that we call exosortase (see TIGR02602)
has distinct subclasses that associated with different
types of exopolysaccharide production loci. This model
represents a distinct clade among a set of
amidotransferases largely annotated (not necessarily
accurately) as glutatime-hydrolyzing asparagine
synthases. Members of this clade are essentially
restricted to the characteristic exopolysaccharide (EPS)
regions that contain the exosortase 1 genome (xrtA), in
genomes that also have numbers of PEP-CTERM domain
(TIGR02595) proteins.
Length = 628
Score = 36.3 bits (84), Expect = 0.025
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 96 LGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLRRMVLSRGVGLSTRS 155
+G+GH R S S QP + G + V NGEI N + L + + G TRS
Sbjct: 44 IGLGHRRLSIIDLSG--GQQP--LFNEDGSVVVVFNGEIYNFQELVAELQALGHVFRTRS 99
Query: 156 DSELITQA 163
D+E+I A
Sbjct: 100 DTEVIVHA 107
>gnl|CDD|178164 PLN02549, PLN02549, asparagine synthase (glutamine-hydrolyzing).
Length = 578
Score = 35.5 bits (82), Expect = 0.040
Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 18/105 (17%)
Query: 115 QPFVVHTAHGVLAVAHNGEIVNAERLR-RMVLSRGVGLSTRSDSELITQALCLNPPDGER 173
QP + V NGEI N + LR ++ L + T SD E+I E
Sbjct: 61 QPLYNEDKT--IVVTANGEIYNHKELREKLKLHK---FRTGSDCEVIAHLY-------EE 108
Query: 174 DGPDWPARITHLMKLTPLSYSLVIMEKDRVFAVRDPYGNRPLCIG 218
G ++ + + S+ L+ + A RD G PL IG
Sbjct: 109 HGEEFVDMLDGM-----FSFVLLDTRDNSFIAARDHIGITPLYIG 148
>gnl|CDD|131773 TIGR02726, phenyl_P_delta, phenylphosphate carboxylase, delta
subunit. Members of this protein family are the alpha
subunit of phenylphosphate carboxylase. Phenol
(methyl-benzene) is converted to phenylphosphate, then
para-carboxylated by this four-subunit enzyme, with the
release of phosphate, to 4-hydroxybenzoate. The enzyme
contains neither biotin nor thiamin pyrophosphate. This
delta subunit belongs to HAD family hydrolases [Energy
metabolism, Anaerobic].
Length = 169
Score = 29.6 bits (66), Expect = 1.9
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 224 KGSQSTVFDFRGQESAG--IVTSEGIDSRRFNIMKGMGMI 261
K + + D G + G ++ EGI+SR F+I GMG+I
Sbjct: 5 KNIKLVILDVDGVMTDGRIVINDEGIESRNFDIKDGMGVI 44
Score = 28.9 bits (64), Expect = 2.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 60 IVTSEGIDSRRFNIMKGMGMI 80
++ EGI+SR F+I GMG+I
Sbjct: 24 VINDEGIESRNFDIKDGMGVI 44
>gnl|CDD|182137 PRK09906, PRK09906, DNA-binding transcriptional regulator HcaR;
Provisional.
Length = 296
Score = 29.0 bits (65), Expect = 3.8
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 80 ISNIFNDENLKKLK-GNLGIGHTR---YSTSAASEEVNCQPFVV 119
+ ++ + +KL+ G L +G R YS E+ +P VV
Sbjct: 123 LVSLITTQQEEKLRRGELDVGFMRHPVYSDEIDYLELLDEPLVV 166
>gnl|CDD|215324 PLN02604, PLN02604, oxidoreductase.
Length = 566
Score = 28.7 bits (64), Expect = 6.1
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 282 VYPGEILEV--------SRTGIKTVSIVRRPDDKPPAFCIFEY 316
+Y GE V SR T S+V R + PP IF Y
Sbjct: 276 IYSGETYSVLVKADQDPSRNYWVTTSVVSRNNTTPPGLAIFNY 318
>gnl|CDD|234088 TIGR03016, pepcterm_hypo_1, uncharacterized protein, PEP-CTERM
system associated. Members of this protein family are
found predominantly in exopolysaccharide biosynthesis
operons marked by the presence of the EpsH-family
putative exosortase and presence in the genome of the
PEP-CTERM protein sorting signal. Members of this family
may be distantly related to the EpsL family modeled in
TIGR03014.
Length = 431
Score = 28.2 bits (63), Expect = 7.4
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 226 SQSTVFDFRGQESAGIVTSEGIDSRRFNI 254
SQ ++ DF GQE VT D F+
Sbjct: 96 SQVSISDFGGQEDNESVTGNRTDQNIFSA 124
>gnl|CDD|179875 PRK04758, PRK04758, hypothetical protein; Validated.
Length = 181
Score = 27.5 bits (61), Expect = 9.1
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 146 SRGVGLSTRSDSELITQALCLNPPDGERDGPDWPARI 182
S+ +GL++ S +EL LC G DG DW ARI
Sbjct: 14 SQQLGLAS-SAAEL-HGGLCGWLAGGGADGADWLARI 48
>gnl|CDD|148587 pfam07062, Clc-like, Clc-like. This family contains a number of
Clc-like proteins that are approximately 250 residues
long.
Length = 212
Score = 27.5 bits (61), Expect = 9.3
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 12 SSVVSGLTHECGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRF 71
S + + L+ G+ A S + TI +GL AL V + +DSR
Sbjct: 114 SMIFASLSIASGICAPCSPSR-----AILFTIFLGLAALLAGVALIIFFVYAHRVDSRFV 168
Query: 72 NIMKG 76
+ G
Sbjct: 169 QGIVG 173
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.267 0.0851 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,833,793
Number of extensions: 1806421
Number of successful extensions: 1490
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1376
Number of HSP's successfully gapped: 102
Length of query: 376
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 278
Effective length of database: 6,590,910
Effective search space: 1832272980
Effective search space used: 1832272980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)