RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy240
(376 letters)
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine
amidotransferase, prtase, purine biosynthesis,
phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus
subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Length = 459
Score = 293 bits (752), Expect = 3e-96
Identities = 93/310 (30%), Positives = 145/310 (46%), Gaps = 61/310 (19%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMIS 81
CGVF G W + + GL +LQHRGQE AGIV ++G + KG G+I+
Sbjct: 1 CGVF-----GIWGHE-EAPQITYYGLHSLQHRGQEGAGIVATDG---EKLTAHKGQGLIT 51
Query: 82 NIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHT-AHGVLAVAHNGEIVNAERL 140
+F + L K+KG IGH RY+T+ N QP + + +G LA+AHNG +VNA +L
Sbjct: 52 EVFQNGELSKVKGKGAIGHVRYATAGGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQL 111
Query: 141 RRMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPARITHLMKLTPLSYSLVIMEK 200
++ + ++G T SD+E++ + + +I + + + +Y+ +IM +
Sbjct: 112 KQQLENQGSIFQTSSDTEVLAHLIKRSG------HFTLKDQIKNSLSMLKGAYAFLIMTE 165
Query: 201 DRVFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVTSE--GIDSRRFNIMKGM 258
+ DP G RPL IG + A +V SE D
Sbjct: 166 TEMIVALDPNGLRPLSIGMM----------------GDAYVVASETCAFD---------- 199
Query: 259 GMISNIFNDENLKKLKGARYVREVYPGEILEVSRTGIKTVSIVRRPDDKPPAFCIFEYVY 318
+ GA Y+REV PGE+L ++ G+K+ R + + C EY+Y
Sbjct: 200 --------------VVGATYLREVEPGEMLIINDEGMKS---ERFSMNINRSICSMEYIY 242
Query: 319 FARSDSIFEG 328
F+R DS +G
Sbjct: 243 FSRPDSNIDG 252
Score = 59.4 bits (145), Expect = 6e-10
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 328 GADSLQYLSVEGLKQAVQLKMKVDSAEGSFGHCTACLTGEYPEELD 373
GAD+L +LSVEGL + + K + + G C AC TG+YP E+
Sbjct: 409 GADTLSFLSVEGLLKGIGRKYD----DSNCGQCLACFTGKYPTEIY 450
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine
biosynthesis, transferase, glycosyltransferase, gluta
amidotransferase; HET: PIN; 2.00A {Escherichia coli}
SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A*
1ecj_A*
Length = 504
Score = 260 bits (668), Expect = 5e-83
Identities = 92/312 (29%), Positives = 146/312 (46%), Gaps = 49/312 (15%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMIS 81
CG+ G V +I L LQHRGQ++AGI+T + + F + K G++S
Sbjct: 1 CGIV-----GIAGVM-PVNQSIYDALTVLQHRGQDAAGIITIDA--NNCFRLRKANGLVS 52
Query: 82 NIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLR 141
++F ++++L+GN+GIGH RY T+ +S QPF V++ +G + +AHNG + NA LR
Sbjct: 53 DVFEARHMQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYG-ITLAHNGNLTNAHELR 111
Query: 142 R-MVLSRGVGLSTRSDSELITQ--ALCLNPPDGERDGPDW-PARITHLMKLTPLSYSLVI 197
+ + + ++T SDSE++ A L+ D A I +L +Y+ V
Sbjct: 112 KKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAATNRLIRGAYACVA 171
Query: 198 M-EKDRVFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVTSEGIDSRRFNIMK 256
M + A RDP G RPL +GK + + V SE S + +
Sbjct: 172 MIIGHGMVAFRDPNGIRPLVLGKRDIDENRTEYM-----------VASE---SVALDTL- 216
Query: 257 GMGMISNIFNDENLKKLKGARYVREVYPGEILEVSRTGIKTVSIVRRPDDKPPAFCIFEY 316
G ++R+V PGE + ++ G + + D+ C+FEY
Sbjct: 217 ------------------GFDFLRDVAPGEAIYITEEGQ--LFTRQCADNPVSNPCLFEY 256
Query: 317 VYFARSDSIFEG 328
VYFAR DS +
Sbjct: 257 VYFARPDSFIDK 268
Score = 50.2 bits (121), Expect = 6e-07
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 5/42 (11%)
Query: 328 GADSLQYLSVEGLKQAVQLKMKVDSAEGSFGHCTACLTGEYP 369
GAD L + + L AV+ + + F + G Y
Sbjct: 430 GADGLIFQDLNDLIDAVRAE---NPDIQQF--ECSVFNGVYV 466
>1te5_A Conserved hypothetical protein; glutamine amidotransferase,
amidotransferase, structural genomics, PSI, protein
structure initiative; 2.00A {Pseudomonas aeruginosa
PAO1} SCOP: d.153.1.1
Length = 257
Score = 94.0 bits (233), Expect = 3e-22
Identities = 38/243 (15%), Positives = 68/243 (27%), Gaps = 30/243 (12%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESA------GIVTSEGIDSRRFNIMK 75
C + + +V I L RG + GI EG R F
Sbjct: 2 CELLGMSA--------NVPTDIVFSFTGLMQRGGGTGPHRDGWGIAFYEGRGVRLFQDPL 53
Query: 76 GMGMISNIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIV 135
+ S + +K IGH R + N PF+ AHNG++
Sbjct: 54 AS-VDSEVARLVQRFPIKSETVIGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLA 112
Query: 136 NAERLRRMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPARITHLMKLT-----P 190
+ + G S + +L+ + P + + L+
Sbjct: 113 DFQPKPGFYRPVGETDSEAAFCDLLNRVRRAFP-----EPVPVEVLLPVLISACDEYRKK 167
Query: 191 LSYSLVIMEKDRVFAVRD---PYGNRPLCIGKILPMKGSQSTVFDFRGQES--AGIVTSE 245
++ +I + D +F Y R G + F ++ +E
Sbjct: 168 GVFNALISDGDWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIATE 227
Query: 246 GID 248
+
Sbjct: 228 PLT 230
>3mdn_A Glutamine aminotransferase class-II domain protei; structural
genomics, PSI-2, protein structure initiative; 2.09A
{Ruegeria pomeroyi}
Length = 274
Score = 84.4 bits (208), Expect = 7e-19
Identities = 51/314 (16%), Positives = 88/314 (28%), Gaps = 64/314 (20%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGM-- 79
C A T + DV LIA +E +G ++ G+
Sbjct: 4 CRWAAYHGTPIFLE--DVISRPGHSLIAQSAHAEECKTATNGDGFGVAWYDARPEPGLYR 61
Query: 80 -ISNIFNDENLKKL----KGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEI 134
+ ++D NL+ + + L + H R ST + NC PF A HNG++
Sbjct: 62 DVYPAWSDPNLRAVAHHVRSGLFLSHVRASTGSCISRNNCHPF----AARRWCFMHNGQV 117
Query: 135 VNAERLRRMVLSR-----GVGLSTRSDSELITQALCLNPPDGERDGPDWPARITHLMKL- 188
E R+ +DSE++ L L+ I L L
Sbjct: 118 GGFEAFRKQADMAIADEFYTYRKGSTDSEVLF-LLALSEGLEHDPHGALARAIARLEGLS 176
Query: 189 ------TPLSYSLVIMEKDRVFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIV 242
+ S + ++A R + S + + V
Sbjct: 177 RAHGTTPHMRLSAAFSDGQTLYAARYSSDHIAP------------SVYYRYSHARQGWAV 224
Query: 243 TSEGIDSRRFNIMKGMGMISNIFNDENLKKLKGARYVREVYPGEILEVSRTGIKTVSIVR 302
SE ++ ++ + E+ PG +L + G
Sbjct: 225 VSEPLE----------------TDEGD---------WTELRPGRMLTIGAEGAAERDFA- 258
Query: 303 RPDDKPPAFCIFEY 316
D A +
Sbjct: 259 PADLGRAAEGHHHH 272
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase
[isomerizing]; complex (transferase/inhibitor),
glutamine amidotransferase; HET: GLU; 1.80A {Escherichia
coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Length = 240
Score = 72.5 bits (179), Expect = 7e-15
Identities = 54/204 (26%), Positives = 83/204 (40%), Gaps = 30/204 (14%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMIS 81
CG+ ++ DVA + GL L++RG +SAG+ + ++ +G +
Sbjct: 1 CGIVGAIAQR------DVAEILLEGLRRLEYRGYDSAGLAVVDA--EGHMTRLRRLGKVQ 52
Query: 82 NIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLR 141
+ L G GI HTR++T EVN P H + + V HNG I N E LR
Sbjct: 53 MLAQAAEEHPLHGGTGIAHTRWATHGEPSEVNAHP---HVSEHI-VVVHNGIIENHEPLR 108
Query: 142 RMVLSRGVGLSTRSDSE----LITQALCLNPPDGERDGPDWPARITHLMKLTPLSYSLVI 197
+ +RG + +D+E L+ L + G + + +Y VI
Sbjct: 109 EELKARGYTFVSETDTEVIAHLVNWEL--------KQGGTLREAVLRAIPQLRGAYGTVI 160
Query: 198 M---EKDRVFAVRDPYGNRPLCIG 218
M D + A R PL IG
Sbjct: 161 MDSRHPDTLLAARS---GSPLVIG 181
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing];
amidotransferase, ammonia channeling, glucosamine 6-
phosphate synthase; HET: F6R; 2.05A {Escherichia coli}
SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X
2vf5_X* 3ooj_A*
Length = 608
Score = 70.2 bits (173), Expect = 3e-13
Identities = 49/180 (27%), Positives = 74/180 (41%), Gaps = 24/180 (13%)
Query: 46 GLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMISNIFNDENLKKLKGNLGIGHTRYST 105
GL L++RG +SAG+ + ++ +G + + L G GI HTR++T
Sbjct: 19 GLRRLEYRGYDSAGLAVVDA--EGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWAT 76
Query: 106 SAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLRRMVLSRGVGLSTRSDSE----LIT 161
EVN P H + + V HNG I N E LR + +RG + +D+E L+
Sbjct: 77 HGEPSEVNAHP---HVS-EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVN 132
Query: 162 QALCLNPPDGERDGPDWPARITHLMKLTPLSYSLVIM---EKDRVFAVRDPYGNRPLCIG 218
L + G + + +Y VIM D + A R PL IG
Sbjct: 133 WEL--------KQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARS---GSPLVIG 181
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling,
asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A
{Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Length = 553
Score = 61.0 bits (148), Expect = 2e-10
Identities = 42/205 (20%), Positives = 64/205 (31%), Gaps = 68/205 (33%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMIS 81
GVF + +++ ++HRG + +GI S
Sbjct: 4 FGVFDIKTD-----AVELRKKALELSRLMRHRGPDWSGIYAS------------------ 40
Query: 82 NIFNDENLKKLKGNLGIGHTRYS----TSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNA 137
N + H R S + A QP + +A NGEI N
Sbjct: 41 ------------DNAILAHERLSIVDVNAGA------QPL--YNQQKTHVLAVNGEIYNH 80
Query: 138 ERLRRMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPARITHL--MKLTPLSYSL 195
+ LR T SD E+I + GP++ + L M ++
Sbjct: 81 QALRAE-YGDRYQFQTGSDCEVILALY-------QEKGPEF---LDDLQGM------FAF 123
Query: 196 VI--MEKDRVFAVRDPYGNRPLCIG 218
+ EKD RD G PL +G
Sbjct: 124 ALYDSEKDAYLIGRDHLGIIPLYMG 148
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.9 bits (139), Expect = 3e-09
Identities = 42/306 (13%), Positives = 90/306 (29%), Gaps = 93/306 (30%)
Query: 81 SNIFND------------ENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHG---- 124
++ND + KL+ L E+ V+ G
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQAL-------------LELRPAKNVL--IDGVLGS 161
Query: 125 ---VLAVAHNGEIVNAERLRRMVLSRGV-----GLSTRSDSEL-ITQALC--LNPPDGER 173
+A+ ++ + +++ + + ++ L + Q L ++P R
Sbjct: 162 GKTWVAL----DVCLSYKVQCK-MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 174 -DGP--------DWPARITHLMKLTPLSYSLVIMEKDRV--------FAVRDPYGNRPLC 216
D A + L+K P L+++ V F + C
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL--LNVQNAKAWNAFNLS--------C 266
Query: 217 IGKILPMKGSQSTVFDFRGQESAGIVTSEGIDSRRFNIMKGMGMISNIFNDENLKKLKGA 276
KIL + V DF + ++ + S + ++ + + L
Sbjct: 267 --KIL-LTTRFKQVTDFLSAATTTHISLDHH-SMTLTPDEVKSLLLKYLD-CRPQDL--- 318
Query: 277 RYVREVYPGEILEVSRTGIKTVSIVRRPDDKPPAFCIFEYVYFARSDSIFEGADSLQYLS 336
P E+L + + I D + +++V + +I E SL L
Sbjct: 319 -------PREVLTTNPRRLSI--IAESIRDGLATWDNWKHVNCDKLTTIIE--SSLNVLE 367
Query: 337 VEGLKQ 342
++
Sbjct: 368 PAEYRK 373
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam
synthetase, AS-B, class B asparagine synthetase,
AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP:
c.26.2.1 d.153.1.1 PDB: 1q19_A*
Length = 503
Score = 56.3 bits (136), Expect = 6e-09
Identities = 25/316 (7%), Positives = 65/316 (20%), Gaps = 78/316 (24%)
Query: 46 GLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMISNIFNDENLKKLKGNLGIGHTRYST 105
+ ++G ++ D + + +
Sbjct: 3 NSFCVVYKGSDTDINNIQRDFDGK-------------------------GEALSNGYLFI 37
Query: 106 SAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLRRMVLSRGVGLSTRSDSELITQALC 165
+ Q + G + N L + +D+EL+
Sbjct: 38 EQNG---HYQKCEMER----GTAYLIGSLYNRTFLIGLAGVWEGEAYLANDAELLALLF- 89
Query: 166 LNPPDGERDGPDWPARITHL--MKLTPLSYSLVI-MEKDRVFAVRDPYGNRPLCIGKILP 222
R G + + + I + + + G P+ + +
Sbjct: 90 ------TRLGANA---LALAEGD------FCFFIDEPNGELTVITESRGFSPVHVVQ--- 131
Query: 223 MKGSQSTVFDFRGQESAGIVTSEGIDSRRFN-IMKGMGMISNIFNDENLKKLKGARYVRE 281
+ + +EG + F + +K +
Sbjct: 132 ------GKKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADTYTPVKN------AQR 179
Query: 282 VYPGEILEVSRTGIKTVSIVRRPDDKPPAFCIFEYVYFARSDSIFEGADSLQYLSVEGLK 341
+ PG + ++ + R P + + I L
Sbjct: 180 LKPGAVHVLTHDSEGYSFVESRTLTTPASNQLLALPREPLLALI-----------DRYLN 228
Query: 342 QAVQLKMKVDSAEGSF 357
++ G
Sbjct: 229 APLEDLAPRFDTVGIP 244
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC
AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC
CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1
d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Length = 513
Score = 54.3 bits (131), Expect = 3e-08
Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 27/128 (21%)
Query: 94 GNLGIGHTRYST------SAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLRRMVLSR 147
+ G + S A + + GEI N + L ++ +
Sbjct: 37 IDTPQGERSLAATLVHAPSVAPDRAVARSL----TGAPTTAVLAGEIYNRDELLSVLPAG 92
Query: 148 GVGLSTRSDSELITQALCLNPPDGERDGPDWPARITHLMKLTPLSYSLVIMEKDRVFAVR 207
+ D+EL+ + L ER + + ++ V+ DRV
Sbjct: 93 P---APEGDAELVLRLL-------ERYDLHAFRLV-NGR------FATVVRTGDRVLLAT 135
Query: 208 DPYGNRPL 215
D G+ PL
Sbjct: 136 DHAGSVPL 143
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 2e-07
Identities = 37/256 (14%), Positives = 75/256 (29%), Gaps = 81/256 (31%)
Query: 75 KGMGM--------ISNIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVL 126
+GMGM +++ + K G + + V P L
Sbjct: 1629 QGMGMDLYKTSKAAQDVW-NRADNHFKDTYGF--------SILDIVINNP-------VNL 1672
Query: 127 AVAHNGEIVNAERLRRMVLSRGVGLSTRSDSELI-------TQALCLNPPDGERDGPDWP 179
+ GE R + + + +E I + + G
Sbjct: 1673 TIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG-------- 1724
Query: 180 ARITHLMKLT----P----LSYSL--VIMEK-----DRVFAVRDPYGNRPL-------CI 217
L+ T P + + + K D FA G+ L +
Sbjct: 1725 -----LLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFA-----GH-SLGEYAALASL 1773
Query: 218 GKILPMKGSQSTVFDFRGQESAGIVTSEGIDSRRFNIMK-GMGMISNIFNDENLKKLKGA 276
++ ++ VF +RG V + + + ++ G ++ F+ E L+ +
Sbjct: 1774 ADVMSIESLVEVVF-YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV--- 1829
Query: 277 RYVREVYP--GEILEV 290
V V G ++E+
Sbjct: 1830 --VERVGKRTGWLVEI 1843
Score = 50.0 bits (119), Expect = 9e-07
Identities = 28/160 (17%), Positives = 48/160 (30%), Gaps = 68/160 (42%)
Query: 256 KGMGM--------ISNIFNDENLKKLKGARYVREVYPGEILEVSRTGIKTVSI------- 300
+GMGM +++N + + ++ Y IL++ ++I
Sbjct: 1629 QGMGMDLYKTSKAAQDVWN-------RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 301 --VRR----------PDDKPPAFCIFEYVYFARSDSIFEGADSL----QY-------LSV 337
+R D K IF+ + + F L Q+ +
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 338 --------EGLKQAVQLKMKVDSAEGSF-GHCTACLTGEY 368
+GL A D+ F GH L GEY
Sbjct: 1742 AAFEDLKSKGLIPA-------DAT---FAGH---SL-GEY 1767
Score = 40.8 bits (95), Expect = 7e-04
Identities = 62/357 (17%), Positives = 106/357 (29%), Gaps = 140/357 (39%)
Query: 53 RGQESAGIVTSEGIDSRRFNIMKGMGMISNIFNDENLKKLKGNLGIGHTRYSTSAASEEV 112
+ SA +++ I G G + F +E L+ L Y T
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF-EE-LRDL----------YQTY------ 180
Query: 113 NCQPFV---VHTAHGVLAVAHNGEIVNAERLRRMVLSRGVGLSTRSDSELITQALCLNPP 169
V + + L+ E++ V ++G+ + I + L
Sbjct: 181 --HVLVGDLIKFSAETLS-----ELIRTTLDAEKVFTQGL------N---ILEWL----- 219
Query: 170 DGERDGPD----------WPARITHLMKLTPLSYSLVIMEKDRVFAVRDPYGNRPLCIGK 219
+ + PD P L+ + L++ +V + G P G+
Sbjct: 220 ENPSNTPDKDYLLSIPISCP-----LIGVIQLAHYVVTAKL---------LGFTP---GE 262
Query: 220 ILPMKGSQSTVFDFRGQESAGIVTSEGI---DSRR-F--NIMKGMGMISNIFNDENLKKL 273
+ + S G+VT+ I DS F ++ K + ++ I
Sbjct: 263 LRSYLKGATGH-------SQGLVTAVAIAETDSWESFFVSVRKAITVLFFI--------- 306
Query: 274 KGARYVREVYPGEILEVSRTGIKTVSIVRRPDDKPPAFCIFEYVYFARSDSIF--EGADS 331
G R E YP L PP+ DS+ EG S
Sbjct: 307 -GVR-CYEAYPNTSL-------------------PPS---------ILEDSLENNEGVPS 336
Query: 332 LQYLSVEGLKQAVQLKMKVDSAEGSF------------GHCTACLTGEYPEELDWYG 376
LS+ L Q Q++ V+ G ++G P+ L YG
Sbjct: 337 PM-LSISNLTQE-QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG-PPQSL--YG 388
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.030
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 21/48 (43%)
Query: 87 ENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEI 134
+ LKKL+ +L + Y+ +A P A+A +
Sbjct: 20 QALKKLQASLKL----YADDSA-------P----------ALAIKATM 46
Score = 29.5 bits (65), Expect = 0.99
Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 25/47 (53%)
Query: 268 ENLKKLKGARYVREVY-PGEILEVSRTGIKTVSIVRRPDDKPPAFCI 313
+ LKKL+ + ++Y D PA I
Sbjct: 20 QALKKLQASL---KLYAD---------------------DSAPALAI 42
>3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography,
beta-ketoacyl SYN brucella melitensis, fragments of
LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar
abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A*
Length = 428
Score = 32.1 bits (74), Expect = 0.29
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 48 IALQHRGQESAGIVTSEGIDSRRFNIMKGMGMISNIFND--ENLKKLK-GNLGIGH-TRY 103
+A H ++G S R ++ GMG++S+I ++ E L+ GI Y
Sbjct: 1 MAHHHHHHMGTLEAQTQGPGSMRRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEY 60
Query: 104 STSA 107
+
Sbjct: 61 AELG 64
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron
sulphur flavoprotein; HET: OMT FMN AKG; 3.0A
{Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1
d.153.1.1 PDB: 2vdc_A*
Length = 1479
Score = 28.6 bits (65), Expect = 3.7
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 25/70 (35%)
Query: 75 KGMGM---ISNIFNDENLKKLKGNLGIGHTRYSTSAASEEVN-------CQPFVVHTAHG 124
KGM + ++ + D ++ + + I H RYST N QPF +
Sbjct: 180 KGMFLAEQLTTFYPDLLDERFESDFAIYHQRYST-------NTFPTWPLAQPFRM----- 227
Query: 125 VLAVAHNGEI 134
+AHNGEI
Sbjct: 228 ---LAHNGEI 234
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex
enzyme, substrate channeling, amidotransferase,
flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A
{Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB:
1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Length = 1520
Score = 28.7 bits (65), Expect = 4.2
Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 25/70 (35%)
Query: 75 KGMGM---ISNIFNDENLKKLKGNLGIGHTRYSTSAASEEVN-------CQPFVVHTAHG 124
KGM + + D N + H R+ST N QP +
Sbjct: 176 KGMVRSIILGEFYLDLKNPGYTSNFAVYHRRFST-------NTMPKWPLAQPMRL----- 223
Query: 125 VLAVAHNGEI 134
+ HNGEI
Sbjct: 224 ---LGHNGEI 230
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 28.1 bits (63), Expect = 5.2
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 72 NIMKGMGMISNIFNDENLKKLKGNLGIGHTR 102
+I + I+ IF D L + G +
Sbjct: 2 SITQPTA-INVIFPDPALANAI-KIAAGKSN 30
>3itw_A Protein TIOX; bleomycin resistance fold, bisintercalator,
solvent-exposed residue, thiocoraline, protein binding,
peptide binding Pro; 2.15A {Micromonospora SP}
Length = 137
Score = 27.1 bits (60), Expect = 5.9
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 201 DRVFAVRDPYGNR 213
R + VRD G+
Sbjct: 104 LRQYLVRDLEGHL 116
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 27.6 bits (62), Expect = 6.7
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 80 ISNIFNDENLKKLKGNLGIGHTR 102
I+ IF D L + +G T
Sbjct: 14 INQIFTDTALAEKM-KTVLGKTN 35
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC,
twin arginine translocation pathway signal P structural
genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Length = 332
Score = 27.4 bits (61), Expect = 7.5
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 294 GIKTVSIVRRPDDKPPAFCIFEYVYFARSDSIFEGADSLQYL 335
G +I +P D P YV D + G ++ L
Sbjct: 88 GAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQL 129
>3cjy_A Putative thioesterase; YP_496845.1, structural genomics, JOI for
structural genomics, JCSG; HET: MSE PGE; 1.70A
{Novosphingobium aromaticivorans}
Length = 259
Score = 27.2 bits (61), Expect = 7.5
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 106 SAASEEVNCQPFVVHTAHGVLAVAHNGEIV-NAERLR 141
A+E V +P V + V + E L+
Sbjct: 46 DVAAETVG-RPVVQGSLQFVSFTPLGSVLDLTVEVLQ 81
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen
activation, iron coupled radical, immune EVAS
replication, oxidoreductase; 1.70A {Chlamydia
trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A
Length = 346
Score = 27.3 bits (61), Expect = 9.1
Identities = 8/22 (36%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 69 RRFNIMKGMG-MISNIFNDENL 89
R N M G+G I DE +
Sbjct: 208 HRQNKMIGIGEQYQYILRDETI 229
Score = 27.3 bits (61), Expect = 9.1
Identities = 8/22 (36%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 250 RRFNIMKGMG-MISNIFNDENL 270
R N M G+G I DE +
Sbjct: 208 HRQNKMIGIGEQYQYILRDETI 229
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase;
HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB:
1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A*
1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A*
1ns7_A* 1ns2_A* 1nsm_A* 1nss_A*
Length = 347
Score = 27.1 bits (61), Expect = 9.7
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 12/75 (16%)
Query: 218 GKILPMKGSQSTVFDFRGQESAGIVTSEGIDSRRFNIMKGMGMISN-IFNDENLKKLKGA 276
G I+ +K T DFR ++ +S + G+ + + L K +
Sbjct: 207 GDIVDIKN---TDLDFRQEKQLS----NAFNSNMEQVQLVKGIDHPFLLDQLGLDKEQ-- 257
Query: 277 RYVREVYPGEILEVS 291
R + V
Sbjct: 258 --ARLTLDDTSISVF 270
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,720,857
Number of extensions: 349167
Number of successful extensions: 760
Number of sequences better than 10.0: 1
Number of HSP's gapped: 726
Number of HSP's successfully gapped: 35
Length of query: 376
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 281
Effective length of database: 4,049,298
Effective search space: 1137852738
Effective search space used: 1137852738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)