RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy240
(376 letters)
>d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 249
Score = 119 bits (299), Expect = 3e-32
Identities = 76/278 (27%), Positives = 124/278 (44%), Gaps = 47/278 (16%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMIS 81
CG+ V +I L LQHRGQ++AGI+T + + F + K G++S
Sbjct: 1 CGIVGIAGVM------PVNQSIYDALTVLQHRGQDAAGIITIDA--NNCFRLRKANGLVS 52
Query: 82 NIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLR 141
++F ++++L+GN+GIGH RY T+ +S QPF V++ +G+ +AHNG + NA LR
Sbjct: 53 DVFEARHMQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYGI-TLAHNGNLTNAHELR 111
Query: 142 RMVLSR-GVGLSTRSDSELITQALCL---NPPDGERDGPDWPARITHLMKLTPLSYSLVI 197
+ + ++T SDSE++ N + + A I +L +Y+ V
Sbjct: 112 KKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAATNRLIRGAYACVA 171
Query: 198 MEKDR-VFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVTSEGIDSRRFNIMK 256
M + A RDP G RPL +GK + + ES + T
Sbjct: 172 MIIGHGMVAFRDPNGIRPLVLGKRDIDENRTEYMV---ASESVALDTL------------ 216
Query: 257 GMGMISNIFNDENLKKLKGARYVREVYPGEILEVSRTG 294
G ++R+V PGE + ++ G
Sbjct: 217 ------------------GFDFLRDVAPGEAIYITEEG 236
>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 238
Score = 109 bits (272), Expect = 2e-28
Identities = 49/198 (24%), Positives = 78/198 (39%), Gaps = 16/198 (8%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMIS 81
CG+ ++ DVA + GL L++RG +SAG+ + ++ +G +
Sbjct: 1 CGIVGAIAQR------DVAEILLEGLRRLEYRGYDSAGLAVVDA--EGHMTRLRRLGKVQ 52
Query: 82 NIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLR 141
+ L G GI HTR++T EVN P V + V HNG I N E LR
Sbjct: 53 MLAQAAEEHPLHGGTGIAHTRWATHGEPSEVNAHPHV----SEHIVVVHNGIIENHEPLR 108
Query: 142 RMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPARITHLMKLTPLSYSLVIMEKD 201
+ +RG + +D T+ + + G + + +Y VIM+
Sbjct: 109 EELKARGYTFVSETD----TEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSR 164
Query: 202 RVFAVRDPYGNRPLCIGK 219
+ PL IG
Sbjct: 165 HPDTLLAARSGSPLVIGL 182
Score = 31.7 bits (71), Expect = 0.096
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 234 RGQESAGIVTSEGIDSRRFNIMKGMGMISNIFNDENLKKLKG 275
RG +SAG+ + ++ +G + + L G
Sbjct: 26 RGYDSAGLAVVDA--EGHMTRLRRLGKVQMLAQAAEEHPLHG 65
>d1te5a_ d.153.1.1 (A:) Hypothetical protein YafJ (PA1307)
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 253
Score = 106 bits (264), Expect = 4e-27
Identities = 39/281 (13%), Positives = 70/281 (24%), Gaps = 52/281 (18%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQES------AGIVTSEGIDSRRFNIMK 75
C + + +V I L RG + GI EG R + +
Sbjct: 1 CELLGMSA--------NVPTDIVFSFTGLMQRGGGTGPHRDGWGIAFYEG---RGVRLFQ 49
Query: 76 GMGMI--SNIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGE 133
S + +K IGH R + N PF+ AHNG+
Sbjct: 50 DPLASVDSEVARLVQRFPIKSETVIGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQ 109
Query: 134 IVNAERLRRMVLSRGVGLSTRSDSELITQALCLNP-PDGERDGPDWPARITHLMKLTPLS 192
+ + + G S + +L+ + P P +
Sbjct: 110 LADFQPKPGFYRPVGETDSEAAFCDLLNRVRRAFPEPVPVEVLLPVLISACDEYR-KKGV 168
Query: 193 YSLVIMEKDRVFAVRDPYGNRPLCIGKILPMK-GSQSTVFDFRGQESAG----IVTSEGI 247
++ +I + D +F P + DF + + ++ +E
Sbjct: 169 FNALISDGDWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIATEP- 227
Query: 248 DSRRFNIMKGMGMISNIFNDENLKKLKGARYVREVYPGEIL 288
L GE +
Sbjct: 228 -------------------------LTDNENWTLQQSGEWV 243
>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase,
N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Length = 234
Score = 100 bits (250), Expect = 2e-25
Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 26/244 (10%)
Query: 22 CGVFACVSTGTWPTQIDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMIS 81
CGVF + GL +LQHRGQE AGIV D + KG G+I+
Sbjct: 1 CGVFGIWGHE------EAPQITYYGLHSLQHRGQEGAGIVA---TDGEKLTAHKGQGLIT 51
Query: 82 NIFNDENLKKLKGNLGIGHTRYSTSAAS-EEVNCQPFVVHTAHGVLAVAHNGEIVNAERL 140
+F + L K+KG IGH RY+T+ E +G LA+AHNG +VNA +L
Sbjct: 52 EVFQNGELSKVKGKGAIGHVRYATAGGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQL 111
Query: 141 RRMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPARITHLMKLTPLSYSLVIMEK 200
++ + ++G T SD+E++ + + +I + + + +Y+ +IM +
Sbjct: 112 KQQLENQGSIFQTSSDTEVLAHLIKRSGHF------TLKDQIKNSLSMLKGAYAFLIMTE 165
Query: 201 DRVFAVRDPYGNRPLCIGKILP--MKGSQSTVFDFRGQE--------SAGIVTSEGIDSR 250
+ DP G RPL IG + + S++ FD G I+ EG+ S
Sbjct: 166 TEMIVALDPNGLRPLSIGMMGDAYVVASETCAFDVVGATYLREVEPGEMLIINDEGMKSE 225
Query: 251 RFNI 254
RF++
Sbjct: 226 RFSM 229
Score = 38.0 bits (87), Expect = 0.001
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 234 RGQESAGIVTSEGIDSRRFNIMKGMGMISNIFNDENLKKLKG 275
RGQE AGIV D + KG G+I+ +F + L K+KG
Sbjct: 26 RGQEGAGIVA---TDGEKLTAHKGQGLITEVFQNGELSKVKG 64
>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium
carotovorum [TaxId: 554]}
Length = 204
Score = 51.5 bits (123), Expect = 2e-08
Identities = 19/212 (8%), Positives = 57/212 (26%), Gaps = 31/212 (14%)
Query: 86 DENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLRRMVL 145
D ++ ++ + S E N + A G + N L +
Sbjct: 12 DTDINNIQRDFDGKGEALSNGYLFIEQN-GHYQKCEMERGTAY-LIGSLYNRTFLIGLAG 69
Query: 146 SRGVGLSTRSDSELITQALCLNPPDGERDGPDWPARITHLMKLTPLSYSLVI-MEKDRVF 204
+D+EL+ + + L + I +
Sbjct: 70 VWEGEAYLANDAELLALLFTRLG--------------ANALALAEGDFCFFIDEPNGELT 115
Query: 205 AVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVTSEGIDSRRFNIMKGMGMISNI 264
+ + G P+ + +G ++ + ++ + + + + ++
Sbjct: 116 VITESRGFSPVHVV-----QGKKAWMT------NSLKLVTAAEGEGALWFEEEALVCQSL 164
Query: 265 FNDENLKKLKGARYVREVYPGEILEVSRTGIK 296
+ +K + + PG + ++
Sbjct: 165 MRADTYTPVKN---AQRLKPGAVHVLTHDSEG 193
>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces
clavuligerus [TaxId: 1901]}
Length = 206
Score = 49.7 bits (118), Expect = 1e-07
Identities = 33/225 (14%), Positives = 65/225 (28%), Gaps = 49/225 (21%)
Query: 73 IMKGMGMISNIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNG 132
+ G ++I + + L L H S A + + G
Sbjct: 24 VFATRGSHTDIDTPQGERSLAATLV--HAP---SVAPDRAVARSLTGAPT----TAVLAG 74
Query: 133 EIVNAERLRRMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPDWPARITHLMKLTPLS 192
EI N + L ++ G + D+EL+ + L ER +
Sbjct: 75 EIYNRDELLSVL---PAGPAPEGDAELVLRLL-------ERYDLHAFRLVNG-------R 117
Query: 193 YSLVIMEKDRVFAVRDPYGNRPLCIGKILPMKGSQSTVFDFRGQESAGIVTSEGIDSRRF 252
++ V+ DRV D G+ PL + + E+ +
Sbjct: 118 FATVVRTGDRVLLATDHAGSVPLYTCVAPGEVRAST--------EAKALAAHRDPKG--- 166
Query: 253 NIMKGMGMISNIFNDENLKKLKGARYVREVYPGEILEVSRTGIKT 297
F + +++ G V +V G ++++
Sbjct: 167 ------------FPLADARRVAGLTGVYQVPAGAVMDIDLGSGTA 199
>d1gph11 c.61.1.1 (1:235-465) Glutamine PRPP amidotransferase,
C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 46.2 bits (109), Expect = 2e-06
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 328 GADSLQYLSVEGLKQAVQLKMKVDSAEGSFGHCTACLTGEYPEEL 372
GAD+L +LSVEGL + + K + G C AC TG+YP E+
Sbjct: 175 GADTLSFLSVEGLLKGIGRKYDDSNC----GQCLACFTGKYPTEI 215
Score = 41.9 bits (98), Expect = 4e-05
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 312 CIFEYVYFARSDSIFEG 328
C EY+YF+R DS +G
Sbjct: 2 CSMEYIYFSRPDSNIDG 18
>d1ecfa1 c.61.1.1 (A:250-492) Glutamine PRPP amidotransferase,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 243
Score = 42.4 bits (99), Expect = 4e-05
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 312 CIFEYVYFARSDSIFEGAD 330
C+FEYVYFAR DS +
Sbjct: 3 CLFEYVYFARPDSFIDKIS 21
Score = 35.4 bits (81), Expect = 0.007
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 329 ADSLQYLSVEGLKQAVQLKMKVDSAEGSFGHCTACLTGEYPEEL 372
AD L + + L AV+ + F + G Y +
Sbjct: 182 ADGLIFQDLNDLIDAVR---AENPDIQQF--ECSVFNGVYVTKD 220
>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase,
N-terminal domain {Azospirillum brasilense [TaxId: 192]}
Length = 422
Score = 38.4 bits (89), Expect = 0.001
Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 11/113 (9%)
Query: 68 SRRFNIMKGMGM---ISNIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHG 124
S R I KGM + ++ + D ++ + + I H RYST+ QPF
Sbjct: 173 SARSIIYKGMFLAEQLTTFYPDLLDERFESDFAIYHQRYSTNTFPTWPLAQPF------- 225
Query: 125 VLAVAHNGEIVNAERLRRMVLSRGVGLSTRSDSELITQALCLNPPDGERDGPD 177
+AHNGEI + + + + + + + G
Sbjct: 226 -RMLAHNGEINTVKGNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLSDSGSL 277
>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase,
N-terminal domain {Synechocystis sp. [TaxId: 1143]}
Length = 430
Score = 37.7 bits (87), Expect = 0.002
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 68 SRRFNIMKGMGM---ISNIFNDENLKKLKGNLGIGHTRYSTSAASEEVNCQPFVVHTAHG 124
S R + KGM + + D N + H R+ST+ + QP + +G
Sbjct: 169 SCRTIVYKGMVRSIILGEFYLDLKNPGYTSNFAVYHRRFSTNTMPKWPLAQPMRLLGHNG 228
Query: 125 -VLAVAHN 131
+ + N
Sbjct: 229 EINTLLGN 236
>d1f61a_ c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 418
Score = 28.9 bits (64), Expect = 1.1
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 229 TVFDFRGQESAGI-VTSEGIDSRRFNIMKGMGMISNIFNDENLKKLKGARYVREVYPGEI 287
AG + ++ + G +I ++++ L AR +V
Sbjct: 167 LQKALIAAGVAGSHWEDQLASEKKCGHLGGKVLIPT---QQHIRTLTSARLAADVADVPT 223
Query: 288 LEVSRT 293
+ ++RT
Sbjct: 224 VVIART 229
>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 192
Score = 27.6 bits (60), Expect = 2.2
Identities = 28/183 (15%), Positives = 46/183 (25%), Gaps = 47/183 (25%)
Query: 37 IDVAHTICMGLIALQHRGQESAGIVTSEGIDSRRFNIMKGMGMISNIFNDENLKKLKGNL 96
+++ ++HRG + +GI S+ N
Sbjct: 14 VELRKKALELSRLMRHRGPDWSGIYASD------------------------------NA 43
Query: 97 GIGHTRYSTSAASEEVNCQPFVVHTAHGVLAVAHNGEIVNAERLRRMVLSRGVGLSTRSD 156
+ H R S + T + + R T SD
Sbjct: 44 ILAHERLSIVDVNAGAQPLYNQQKTHVLA-----VNGEIYNHQALRAEYGDRYQFQTGSD 98
Query: 157 SELITQALCLNPPDGERDGPDWPARITHLMKLTPLSYSLVIMEKDRVFAVRDPYGNRPLC 216
E+I P+ +++L EKD RD G PL
Sbjct: 99 CEVILALYQEKGPEFLD------------DLQGMFAFALYDSEKDAYLIGRDHLGIIPLY 146
Query: 217 IGK 219
+G
Sbjct: 147 MGY 149
>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein
ThiS {Bacillus subtilis [TaxId: 1423]}
Length = 65
Score = 24.6 bits (54), Expect = 4.9
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 126 LAVAHNGEIVNAERLRRMVLSRG 148
+ V N EI+ ER + L
Sbjct: 32 VIVERNKEIIGKERYHEVELCDR 54
>d3pcca_ b.3.6.1 (A:) Protocatechuate-3,4-dioxygenase, alpha chain
{Pseudomonas putida [TaxId: 303]}
Length = 200
Score = 25.8 bits (56), Expect = 7.4
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 199 EKDRVFAVRDPYGNRPLCIGKILPMKGSQSTVFDFR 234
K V + + R I K + G + FD R
Sbjct: 153 AKCPVLNLIEQPQRRETLIAKRCEVDGKTAYRFDIR 188
>d2fpna1 d.129.10.1 (A:1-214) Hypothetical protein YwmB {Bacillus
subtilis [TaxId: 1423]}
Length = 214
Score = 25.6 bits (56), Expect = 9.9
Identities = 4/33 (12%), Positives = 9/33 (27%)
Query: 341 KQAVQLKMKVDSAEGSFGHCTACLTGEYPEELD 373
Q + + CL G + ++
Sbjct: 108 DTYEQFERETLGIFQEKVVIFTCLNGHLDDNMN 140
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,363,918
Number of extensions: 62248
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 23
Length of query: 376
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 289
Effective length of database: 1,213,086
Effective search space: 350581854
Effective search space used: 350581854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)