BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2401
(363 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 397 bits (1020), Expect = e-111, Method: Compositional matrix adjust.
Identities = 185/363 (50%), Positives = 266/363 (73%)
Query: 1 MNLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKT 60
M KCG++GLPNVGKSTLFNALTK I A NYPFCTIEPN G++ +PD RL L IVK
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKP 60
Query: 61 KKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEIN 120
++I P ++ VDIAGLV+GASKGEGLGNKFLA+IRET+ + HV+RCF++D I H++G+I+
Sbjct: 61 ERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKID 120
Query: 121 PIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRL 180
P+ D + I TEL L+DL E+ I + K+ ++ + L ++++I+ L + IR
Sbjct: 121 PLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFELSVMEKILPVLENAGMIRS 180
Query: 181 MSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKL 240
+ L+ EEL +IK N LT+KP +++ANV E+GF+NN LD+++ A + ++ +CA +
Sbjct: 181 VGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240
Query: 241 EEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTVGKKEIRAWTIPNGTT 300
E EI++L++ +K FL +LG++E LN +IRA ++LL+L+TYFT G KE+RAWT+ G T
Sbjct: 241 ESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTVSVGAT 300
Query: 301 AEQAAGIIHTDIKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDGDILNFL 360
A +AA +IHTD ++GFIRA I+Y+DF+ + GE G K AGK R EGK Y+V+DGD+++F
Sbjct: 301 APKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMHFR 360
Query: 361 FNI 363
FN+
Sbjct: 361 FNV 363
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 312 bits (800), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 155/367 (42%), Positives = 231/367 (62%), Gaps = 8/367 (2%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLN-NIVKTK 61
L G++GLPNVGKSTLFNALT+ A NYPF TI+ N+G++ + D+RL L K +
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGE 61
Query: 62 KIFPAI---IKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGE 118
++ P + ++ VDIAGLV GA KGEGLGN+FLAHIRE + HV+RCF D + H+ G
Sbjct: 62 RVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGR 121
Query: 119 INPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPI 178
++P+ DAEV++TEL+L+DLA LE+ +++ K+ E + LL+ + + +L + P
Sbjct: 122 VDPLEDAEVVETELLLADLATLERRLERLRKEARADRER-LPLLEAAEGLYVHLQEGKPA 180
Query: 179 RLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGF---KNNLLLDQLKIYAHNQNIPIII 235
R + +K LLT KP+I+VANV E + N ++ ++ A + +++
Sbjct: 181 RTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVV 240
Query: 236 ICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTVGKKEIRAWTI 295
+ A+LE E+++L+ + + L GL+E+ L L RA + LDL T+FT G+KE+RAWT+
Sbjct: 241 VSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAGEKEVRAWTV 300
Query: 296 PNGTTAEQAAGIIHTDIKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDGD 355
GT A +AAG IH+D++RGFIRA I + + G K G +R EGK Y V+DGD
Sbjct: 301 RRGTKAPRAAGEIHSDMERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGD 360
Query: 356 ILNFLFN 362
++ LFN
Sbjct: 361 VIYVLFN 367
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 311 bits (797), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 154/367 (41%), Positives = 227/367 (61%), Gaps = 8/367 (2%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIV---- 58
L G++GLPNVGKSTLFNALT+ A NYPF TI+ N+G++ + D+RL L
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGE 61
Query: 59 KTKKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGE 118
+ + P ++ VDIAGLV GA KGEGLGN+FLAHIRE + HV+RCF D + H+ G
Sbjct: 62 RVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGR 121
Query: 119 INPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPI 178
++P+ DAEV++TEL+L+DLA LE+ +++ K+ E + LL+ + + +L + P
Sbjct: 122 VDPLEDAEVVETELLLADLATLERRLERLRKEARADRER-LPLLEAAEGLYVHLQEGKPA 180
Query: 179 RLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGF---KNNLLLDQLKIYAHNQNIPIII 235
R + +K LLT KP+I+VANV E + N ++ ++ A + +++
Sbjct: 181 RTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVV 240
Query: 236 ICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTVGKKEIRAWTI 295
+ A+LE E+++L+ + + L GL+E+ L L RA + LDL T+FT G+KE+RAWT+
Sbjct: 241 VSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAGEKEVRAWTV 300
Query: 296 PNGTTAEQAAGIIHTDIKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDGD 355
GT A +AAG IH+D +RGFIRA I + + G K G +R EGK Y V+DGD
Sbjct: 301 RRGTKAPRAAGEIHSDXERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGD 360
Query: 356 ILNFLFN 362
++ LFN
Sbjct: 361 VIYVLFN 367
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 266 bits (681), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 149/372 (40%), Positives = 219/372 (58%), Gaps = 16/372 (4%)
Query: 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTK 61
+LK G++GLPNVGKST FN LT + SAEN+PFCTI+PN + VPD+R L K
Sbjct: 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPA 81
Query: 62 KIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINP 121
PA + +VDIAGLV GA G+GLGN FL+HI + + H+ R F+DD ITH+ G ++P
Sbjct: 82 SKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDP 141
Query: 122 IHDAEVIQTELILSDLAILEKYIDKENKKFF------LKNEHSIELLKLLKRIIFNLNKS 175
I D E+I EL L D ++ IDK K LK E+ I + K + +++
Sbjct: 142 IRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLKPEYDI----MCKVKSWVIDQK 197
Query: 176 IPIRLM-SLNNEELMSIKFLNLLTIKPIIFVANVKENGF--KNNLLLDQLKIYA--HNQN 230
P+R N++E+ + LT KP++++ N+ E + K N L ++K + ++
Sbjct: 198 KPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRKKNKWLIKIKEWVDKYDPG 257
Query: 231 IPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTVGKKEI 290
+I LE ++ +L+ +++ +L+ + ++ L +I+A F+ L L +FT G E+
Sbjct: 258 ALVIPFSGALELKLQELSAEERQKYLE-ANMTQSALPKIIKAGFAALQLEYFFTAGPDEV 316
Query: 291 RAWTIPNGTTAEQAAGIIHTDIKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYL 350
RAWTI GT A QAAG IHTD ++GFI A + Y+DF E K AGK R +G+ Y+
Sbjct: 317 RAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYI 376
Query: 351 VEDGDILNFLFN 362
VEDGDI+ F FN
Sbjct: 377 VEDGDIIFFKFN 388
>pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase
Length = 392
Score = 236 bits (602), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 135/370 (36%), Positives = 207/370 (55%), Gaps = 14/370 (3%)
Query: 2 NLKCGLIGLPNVGKSTLFNALTKLKIS-AENYPFCTIEPNIGIIEVPDKRLKHLNNIVKT 60
NLK G++G PNVGKST F A+TK + NYP+ TI+P + VPD+R L K
Sbjct: 20 NLKTGIVGXPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKP 79
Query: 61 KKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEIN 120
K PA + + DIAGL GAS G GLGN FL+H+R + + V+R F D +I H+ G+++
Sbjct: 80 KSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVD 139
Query: 121 PIHDAEVIQTELILSDLAILEKYIDKENK-----KFFLKNEHSIELLKLLKRIIFNLNKS 175
PI D +I EL++ D +EK+++ K L+ + E +++++ L ++
Sbjct: 140 PIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEXKAKKEEQAIIEKVYQYLTET 199
Query: 176 -IPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGF--KNNLLLDQLKIYAHNQNIP 232
PIR +N E+ I L LLT KP+I++ N E F + N L ++K + ++N P
Sbjct: 200 KQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNXSERDFLRQKNKYLPKIKKWI-DENSP 258
Query: 233 ---IIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTVGKKE 289
+I EE +++ + L K + L +I ++ L+L YFT G+ E
Sbjct: 259 GDTLIPXSVAFEERLTNFTEEEAIEECKKLNTK-SXLPKIIVTGYNALNLINYFTCGEDE 317
Query: 290 IRAWTIPNGTTAEQAAGIIHTDIKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKY 349
+R+WTI GT A QAAG+IHTD ++ F+ Y+D YK E C+ AGK ++GK+Y
Sbjct: 318 VRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIXHYQDLFDYKTENACRAAGKYLTKGKEY 377
Query: 350 LVEDGDILNF 359
+ E GDI ++
Sbjct: 378 VXESGDIAHW 387
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 83/157 (52%), Gaps = 8/157 (5%)
Query: 6 GLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGII-EVPDKRLKHL------NNIV 58
G++G PNVGKST F+A T + + NYPF TIE N+G+ + D K L N
Sbjct: 4 GVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYE 63
Query: 59 KTKKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCF-KDDKITHISG 117
+ +K VD+AGLV GA +G GLGNKFL +R + +IHV+ K D +
Sbjct: 64 YRNGLALIPVKXVDVAGLVPGAHEGRGLGNKFLDDLRXASALIHVVDATGKTDPEGQPTD 123
Query: 118 EINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLK 154
+P+ D E ++ E+ IL K DK K+ L+
Sbjct: 124 YHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQ 160
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 27/138 (19%)
Query: 5 CGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIF 64
GL+G PN GKS+L A+T+ YPF T+ PN+G++EV ++
Sbjct: 160 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEER------------- 206
Query: 65 PAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHD 124
L DI G++ GAS+G+GLG +FL HI T ++++V+ + P+
Sbjct: 207 ---FTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADE-----------PLKT 252
Query: 125 AEVIQTELILSDLAILEK 142
E ++ E+ D A+L +
Sbjct: 253 LETLRKEVGAYDPALLRR 270
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 16/100 (16%)
Query: 5 CGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIF 64
GL+G P+VGKSTL + ++ K +Y F T+ PN+G +E D R
Sbjct: 161 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGXVETDDGR-------------- 206
Query: 65 PAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVI 104
D+ GL+ GA +G GLG++FL HI T +++HVI
Sbjct: 207 --SFVXADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVI 244
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 29/127 (22%)
Query: 6 GLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFP 65
G +G P+VGKSTL + LT + A Y F T ++ VP +++ K
Sbjct: 76 GFVGFPSVGKSTLLSKLTGTESEAAEYEFTT------LVTVP--------GVIRYKG--- 118
Query: 66 AIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDA 125
A I+++D+ G++ GA G G G + +A R N++ ++ K P+H
Sbjct: 119 AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNK------------PLHHK 166
Query: 126 EVIQTEL 132
++I+ EL
Sbjct: 167 QIIEKEL 173
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 5 CGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49
L+G PNVGK+T+FNALT L+ N+P T+E GI+E +K
Sbjct: 6 VALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK 50
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGI 43
+K L G PNVGK++LFNALT K N+P T+E G+
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGV 46
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGI 43
+K L G PNVGK++LFNALT K N+P T+E G+
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGV 46
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob
Iron Iransporter
Length = 168
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGI 43
+K L G PNVGK++LFNALT K N+P T+E G+
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGV 46
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLK 52
+ LIG PNVGKST+FNALT + N+P T+E G E ++ K
Sbjct: 6 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFK 54
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLK 52
+ LIG PNVGKST+FNALT + N+P T+E G E ++ K
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFK 53
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLK 52
+ LIG PNVGKST+FNALT + N+P T+E G E ++ K
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFK 53
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLK 52
+ LIG PNVGKST+FNALT + N+P T+E G E ++ K
Sbjct: 9 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFK 57
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Gdp
Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Gdp
Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Gmppnp
Binding State
Length = 267
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRL 51
L GLIG PN GK+TLFN LT + N+ T+E GI D ++
Sbjct: 4 LTVGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGIFATTDHQV 52
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 23/39 (58%)
Query: 7 LIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIE 45
+ G PNVGKSTL ALT K +YPF T N+G E
Sbjct: 172 IAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFE 210
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 7 LIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIG-------IIEVPD 48
LIG PN GK+TLFNALT N+P T+E G +IE+ D
Sbjct: 6 LIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITD 54
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And
Regulation Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And
Regulation Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And
Regulation Of Fe2+ Membrane Transport
Length = 270
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRL 51
L GLIG PN GK+TLFN LT + N+ T+E G D ++
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQV 52
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRL 51
L GLIG PN GK+TLFN LT + N+ T+E G D ++
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQV 52
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRL 51
L GLIG PN GK+TLFN LT + N+ T+E G D ++
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQV 52
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 5 CGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIF 64
G++G N GK++LFN+LT L + F T+ P I + ++++ ++ + + I
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVSFIRGIP 241
Query: 65 PAII 68
P I+
Sbjct: 242 PQIV 245
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 5 CGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIF 64
G++G N GK++LFN+LT L + F T+ P I + ++++ ++ + + I
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVPFIRGIP 241
Query: 65 PAII 68
P I+
Sbjct: 242 PQIV 245
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 5 CGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIF 64
G++G N GK++LFN+LT L + F T+ P I + ++++ ++ + + I
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIP 241
Query: 65 PAII 68
P I+
Sbjct: 242 PQIV 245
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a
Mutant Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a
Mutant Bound To Gmppnp
Length = 272
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEV-PDKRLKHLNNIVKTKK 62
+ LIG PN GK++LFN +T N+P T+E G+++ D ++ L I
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSP 64
Query: 63 IFPA 66
PA
Sbjct: 65 YSPA 68
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S.
Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGII 44
+ LIG PN GK++LFN +T N+P T+E G++
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV 45
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
Length = 272
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGII 44
+ LIG PN GK++LFN +T N+P T+E G++
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV 45
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 3 LKCGLIGLPNVGKSTLFNA-LTKLKISAENYPFCTIEP 39
+K ++G PNVGKSTLFNA L K + P T +P
Sbjct: 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDP 218
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 18/100 (18%)
Query: 7 LIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPA 66
++G PNVGKSTLFN L K K +E G+ P + T + +
Sbjct: 6 IVGRPNVGKSTLFNKLVKKKK-------AIVEDEEGVTRDP---------VQDTVEWYGK 49
Query: 67 IIKLVDIAGLVSGASK--GEGLGNKFLAHIRETNIVIHVI 104
KLVD G+ + L IRE ++V+ V+
Sbjct: 50 TFKLVDTCGVFDNPQDIISQKXKEVTLNXIREADLVLFVV 89
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s
Mutant Without Nucleotide
Length = 272
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGII 44
+ LIG PN GK++LFN +T N+P ++E G++
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVSVERKSGLV 45
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a
Mutant Bound To Gdp
Length = 272
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGII 44
+ LIG PN GK++LFN +T N+P +E G++
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVAVERKSGLV 45
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a
Mutant Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a
Mutant Bound To Mgdp
Length = 272
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGII 44
+ LIG P GK++LFN +T N+P T+E G++
Sbjct: 5 EIALIGNPASGKTSLFNLITGHNQRVGNWPGVTVERKSGLV 45
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 18/84 (21%)
Query: 7 LIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIG----------IIEVP---DKRLKH 53
L G PNVGKS+ N +++ + ++Y F T +G II+ P D+ ++
Sbjct: 34 LSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFEN 93
Query: 54 LNNIVKTKKIFPAIIKLVDIAGLV 77
N I T I L I G++
Sbjct: 94 RNTIEMT-----TITALAHINGVI 112
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of
Enga From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of
Enga From Thermus Thermophilus Hb8
Length = 161
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 18/77 (23%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKIS-AENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKK 62
K ++G PNVGKS+LFN L K + + + P T + G++E R
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRF----------- 51
Query: 63 IFPAIIKLVDIAGLVSG 79
LVD GL SG
Sbjct: 52 ------LLVDTGGLWSG 62
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 5 CGLIGLPNVGKSTLFNALTKLKIS-AENYPFCT 36
++G PNVGKST+FN + +IS E+ P T
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVT 38
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 5 CGLIGLPNVGKSTLFNALTKLKIS-AENYPFCT 36
++G PNVGKST+FN + +IS E+ P T
Sbjct: 26 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVT 58
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 2 NLKCGLIGLPNVGKSTLFNALTK 24
LK ++G PNVGKS+L NA ++
Sbjct: 224 GLKVAIVGRPNVGKSSLLNAWSQ 246
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 5 CGLI---GLPNVGKSTLFNALTKLKIS 28
CG I G PNVGKSTL N L KIS
Sbjct: 5 CGFIAIVGRPNVGKSTLLNKLLGQKIS 31
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 5 CGLI---GLPNVGKSTLFNALTKLKIS 28
CG I G PNVGKSTL N L KIS
Sbjct: 8 CGFIAIVGRPNVGKSTLLNKLLGQKIS 34
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKIS 28
++ +IG+PNVGKSTL N L K I+
Sbjct: 121 IRALIIGIPNVGKSTLINRLAKKNIA 146
>pdb|4F0D|A Chain A, Human Artd15PARP16 IN COMPLEX WITH 3-Aminobenzamide
pdb|4F0D|B Chain B, Human Artd15PARP16 IN COMPLEX WITH 3-Aminobenzamide
Length = 277
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 133 ILSDLAILEKYIDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIK 192
ILS +A+ E ID + K K + S E+ + RI + IP + + N +L+ +K
Sbjct: 206 ILSCVAVCE-VIDHPDVKCQTKKKDSKEIDRRRARIKHSEGGDIPPKYFVVTNNQLLRVK 264
Query: 193 FLNLLTIKP 201
+L + + KP
Sbjct: 265 YLLVYSQKP 273
>pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae:
A Putative P-Loop Containing Kinase With A Circular
Permutation.
pdb|2GAA|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae:
A Putative P-Loop Containing Kinase With A Circular
Permutation
Length = 359
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 7 LIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPA 66
L+G P GKST+ L ++ I+ + + F + PN +IEV D RLK + N+V + K
Sbjct: 29 LVGSPGSGKSTIAEELXQI-INEKYHTFLSEHPN--VIEVND-RLKPMVNLVDSLKTLQP 84
Query: 67 --IIKLVDIAGL 76
+ ++++ GL
Sbjct: 85 NKVAEMIENQGL 96
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 5 CGLIGLPNVGKSTLFNALTKLKIS 28
++G PNVGKSTL N L K+S
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVS 35
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The
3' End Of 16s Rrna
Length = 308
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 5 CGLIGLPNVGKSTLFNALTKLKIS 28
++G PNVGKSTL N L K+S
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVS 36
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 5 CGLIGLPNVGKSTLFNALTKLKIS 28
++G PNVGKSTL N L +K++
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVA 33
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 2 NLKCGLIGLPNVGKSTLFNAL 22
L+ ++G PNVGKSTL N L
Sbjct: 243 GLRMVIVGKPNVGKSTLLNRL 263
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.142 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,461,750
Number of Sequences: 62578
Number of extensions: 443407
Number of successful extensions: 1313
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1248
Number of HSP's gapped (non-prelim): 57
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)