Query psy2401
Match_columns 363
No_of_seqs 358 out of 3122
Neff 7.9
Searched_HMMs 46136
Date Sat Aug 17 00:05:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2401.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2401hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09601 GTP-binding protein Y 100.0 1.7E-95 4E-100 698.6 33.8 363 1-363 1-364 (364)
2 TIGR00092 GTP-binding protein 100.0 4.1E-92 8.8E-97 675.2 30.6 361 1-363 1-368 (368)
3 PTZ00258 GTP-binding protein; 100.0 9.7E-92 2.1E-96 679.9 32.7 362 2-363 21-388 (390)
4 COG0012 Predicted GTPase, prob 100.0 9.1E-92 2E-96 662.3 26.3 363 1-363 1-372 (372)
5 KOG1491|consensus 100.0 4.9E-86 1.1E-90 609.3 27.2 362 1-363 19-391 (391)
6 PRK09602 translation-associate 100.0 4.9E-63 1.1E-67 484.4 29.0 333 3-361 2-394 (396)
7 cd01900 YchF YchF subfamily. 100.0 5E-54 1.1E-58 400.5 22.7 273 5-277 1-274 (274)
8 COG1163 DRG Predicted GTPase [ 100.0 1.4E-47 3.1E-52 353.0 17.5 286 3-360 64-363 (365)
9 PF06071 YchF-GTPase_C: Protei 100.0 7.6E-44 1.7E-48 267.2 5.7 84 279-362 1-84 (84)
10 cd04867 TGS_YchF_C TGS_YchF_C: 100.0 5.2E-43 1.1E-47 260.9 6.3 83 279-361 1-83 (83)
11 cd01899 Ygr210 Ygr210 subfamil 100.0 5.8E-37 1.3E-41 292.3 18.1 246 5-256 1-268 (318)
12 KOG1486|consensus 100.0 5.1E-35 1.1E-39 260.6 15.0 286 3-360 63-362 (364)
13 KOG1487|consensus 100.0 1E-29 2.3E-34 227.6 8.0 284 4-360 61-356 (358)
14 cd01896 DRG The developmentall 99.9 3.3E-26 7.1E-31 210.3 13.9 220 4-285 2-233 (233)
15 COG0536 Obg Predicted GTPase [ 99.9 1.9E-25 4.1E-30 208.3 13.3 174 4-281 161-336 (369)
16 PRK12296 obgE GTPase CgtA; Rev 99.9 4.2E-25 9.1E-30 220.5 14.5 172 3-247 160-331 (500)
17 KOG1489|consensus 99.9 1.2E-24 2.6E-29 200.6 13.7 159 4-246 198-357 (366)
18 PRK12297 obgE GTPase CgtA; Rev 99.9 6.7E-24 1.4E-28 209.3 14.0 89 4-108 160-248 (424)
19 PRK12299 obgE GTPase CgtA; Rev 99.9 2.2E-23 4.9E-28 200.6 16.6 90 3-108 159-248 (335)
20 TIGR02729 Obg_CgtA Obg family 99.9 2.5E-22 5.5E-27 193.1 16.4 90 3-108 158-247 (329)
21 PF02421 FeoB_N: Ferrous iron 99.9 7E-23 1.5E-27 175.6 10.3 87 3-107 1-89 (156)
22 PRK12298 obgE GTPase CgtA; Rev 99.9 5.4E-22 1.2E-26 194.6 15.4 88 4-107 161-248 (390)
23 cd01886 EF-G Elongation factor 99.9 7.7E-21 1.7E-25 178.2 15.4 225 4-285 1-248 (270)
24 COG1160 Predicted GTPases [Gen 99.9 8.3E-21 1.8E-25 184.1 14.7 90 1-107 1-94 (444)
25 cd04938 TGS_Obg-like TGS_Obg-l 99.8 4E-21 8.6E-26 144.8 7.5 65 279-361 1-76 (76)
26 COG1159 Era GTPase [General fu 99.8 3.9E-20 8.4E-25 170.8 14.5 88 4-108 8-97 (298)
27 cd01898 Obg Obg subfamily. Th 99.8 6.4E-20 1.4E-24 159.1 14.8 89 4-108 2-90 (170)
28 cd01881 Obg_like The Obg-like 99.8 4.7E-19 1E-23 154.2 14.1 85 7-108 1-86 (176)
29 COG0486 ThdF Predicted GTPase 99.8 5.5E-19 1.2E-23 171.9 13.3 90 2-108 217-308 (454)
30 TIGR00436 era GTP-binding prot 99.8 2.7E-18 5.8E-23 161.3 15.5 87 4-107 2-90 (270)
31 cd04170 EF-G_bact Elongation f 99.8 2.8E-18 6E-23 161.0 14.3 226 4-286 1-247 (268)
32 cd04168 TetM_like Tet(M)-like 99.8 2.5E-17 5.5E-22 151.7 17.9 184 4-285 1-215 (237)
33 TIGR03156 GTP_HflX GTP-binding 99.7 1.8E-17 4E-22 160.8 15.4 89 3-108 190-280 (351)
34 cd04169 RF3 RF3 subfamily. Pe 99.7 1.5E-17 3.3E-22 155.7 13.0 219 3-285 3-245 (267)
35 cd01897 NOG NOG1 is a nucleola 99.7 7.9E-17 1.7E-21 139.5 16.5 89 3-108 1-91 (168)
36 COG0370 FeoB Fe2+ transport sy 99.7 1.6E-17 3.5E-22 168.0 13.4 88 2-107 3-92 (653)
37 COG2262 HflX GTPases [General 99.7 3.5E-17 7.6E-22 156.8 14.4 88 3-108 193-283 (411)
38 PRK15494 era GTPase Era; Provi 99.7 6.1E-17 1.3E-21 156.7 15.2 88 3-107 53-142 (339)
39 COG1084 Predicted GTPase [Gene 99.7 3.3E-17 7.1E-22 152.8 12.1 89 3-108 169-259 (346)
40 cd04171 SelB SelB subfamily. 99.7 9.2E-17 2E-21 137.9 13.6 82 3-107 1-85 (164)
41 cd01861 Rab6 Rab6 subfamily. 99.7 1.1E-16 2.3E-21 137.5 12.9 83 3-107 1-83 (161)
42 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 2.1E-16 4.6E-21 136.7 14.3 150 3-244 3-152 (166)
43 cd01868 Rab11_like Rab11-like. 99.7 3.2E-16 7E-21 135.3 14.0 83 3-107 4-86 (165)
44 PF01926 MMR_HSR1: 50S ribosom 99.7 9.5E-17 2.1E-21 131.2 10.0 87 4-107 1-90 (116)
45 cd04145 M_R_Ras_like M-Ras/R-R 99.7 5.7E-16 1.2E-20 133.3 15.3 82 3-107 3-84 (164)
46 COG1160 Predicted GTPases [Gen 99.7 3E-16 6.5E-21 152.5 14.9 185 2-277 178-373 (444)
47 cd01878 HflX HflX subfamily. 99.7 5.2E-16 1.1E-20 139.3 15.4 90 3-108 42-132 (204)
48 PRK09554 feoB ferrous iron tra 99.7 3.5E-16 7.5E-21 165.2 16.4 89 1-107 2-96 (772)
49 cd04136 Rap_like Rap-like subf 99.7 6.4E-16 1.4E-20 132.8 15.2 82 3-107 2-83 (163)
50 cd04119 RJL RJL (RabJ-Like) su 99.7 4.9E-16 1.1E-20 133.8 14.2 83 3-107 1-83 (168)
51 cd01879 FeoB Ferrous iron tran 99.7 5E-16 1.1E-20 132.6 13.9 83 7-107 1-85 (158)
52 cd01865 Rab3 Rab3 subfamily. 99.7 5.7E-16 1.2E-20 134.2 14.2 83 3-107 2-84 (165)
53 PRK00089 era GTPase Era; Revie 99.7 6E-16 1.3E-20 146.9 15.5 87 4-107 7-95 (292)
54 PRK11058 GTPase HflX; Provisio 99.7 5.4E-16 1.2E-20 154.0 15.2 89 3-108 198-288 (426)
55 PRK05291 trmE tRNA modificatio 99.7 3.7E-16 8E-21 156.6 14.2 90 2-108 215-306 (449)
56 cd04142 RRP22 RRP22 subfamily. 99.7 5.9E-16 1.3E-20 138.8 14.1 90 3-107 1-91 (198)
57 cd01867 Rab8_Rab10_Rab13_like 99.7 3E-16 6.6E-21 136.2 11.8 150 3-244 4-153 (167)
58 cd04138 H_N_K_Ras_like H-Ras/N 99.7 1.1E-15 2.4E-20 130.8 14.7 82 3-107 2-83 (162)
59 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 1.3E-15 2.9E-20 136.5 15.8 158 3-248 1-160 (201)
60 cd04175 Rap1 Rap1 subgroup. T 99.7 1.2E-15 2.5E-20 131.8 14.6 83 2-107 1-83 (164)
61 cd04164 trmE TrmE (MnmE, ThdF, 99.7 1.3E-15 2.7E-20 129.6 14.6 89 2-107 1-91 (157)
62 cd01866 Rab2 Rab2 subfamily. 99.7 1.1E-15 2.4E-20 132.9 14.2 83 3-107 5-87 (168)
63 smart00175 RAB Rab subfamily o 99.7 1E-15 2.3E-20 131.5 13.9 83 3-107 1-83 (164)
64 smart00173 RAS Ras subfamily o 99.7 1.4E-15 3.1E-20 131.0 14.7 82 3-107 1-82 (164)
65 cd01863 Rab18 Rab18 subfamily. 99.7 2.1E-15 4.4E-20 129.6 15.0 83 3-107 1-83 (161)
66 TIGR00450 mnmE_trmE_thdF tRNA 99.7 9.8E-16 2.1E-20 152.9 14.6 89 2-107 203-293 (442)
67 cd04176 Rap2 Rap2 subgroup. T 99.7 2.3E-15 5E-20 129.7 15.0 82 3-107 2-83 (163)
68 cd04122 Rab14 Rab14 subfamily. 99.7 4.1E-16 9E-21 135.1 10.1 152 2-246 2-154 (166)
69 TIGR03594 GTPase_EngA ribosome 99.7 1.2E-15 2.6E-20 152.4 14.6 87 4-107 1-89 (429)
70 cd04160 Arfrp1 Arfrp1 subfamil 99.7 1.6E-15 3.5E-20 131.1 13.2 80 4-107 1-84 (167)
71 TIGR00484 EF-G translation elo 99.7 2E-15 4.2E-20 159.1 16.4 226 3-285 11-259 (689)
72 cd04109 Rab28 Rab28 subfamily. 99.7 1.1E-15 2.4E-20 138.7 12.5 84 3-107 1-84 (215)
73 cd01894 EngA1 EngA1 subfamily. 99.7 2E-15 4.3E-20 128.5 13.3 85 6-107 1-87 (157)
74 cd04127 Rab27A Rab27a subfamil 99.7 1.8E-15 3.9E-20 132.7 13.4 162 3-245 5-166 (180)
75 cd04112 Rab26 Rab26 subfamily. 99.7 2.3E-15 5E-20 133.9 14.1 83 3-107 1-84 (191)
76 cd04113 Rab4 Rab4 subfamily. 99.6 1.6E-15 3.5E-20 130.4 12.7 83 3-107 1-83 (161)
77 cd04124 RabL2 RabL2 subfamily. 99.6 5.5E-15 1.2E-19 127.6 15.8 83 3-107 1-83 (161)
78 cd01864 Rab19 Rab19 subfamily. 99.6 3.1E-15 6.8E-20 129.3 14.1 83 3-107 4-86 (165)
79 cd01895 EngA2 EngA2 subfamily. 99.6 9.2E-15 2E-19 126.1 17.0 89 2-107 2-95 (174)
80 PRK03003 GTP-binding protein D 99.6 4.2E-15 9.1E-20 150.2 16.5 184 3-278 212-405 (472)
81 TIGR03594 GTPase_EngA ribosome 99.6 5.4E-15 1.2E-19 147.7 16.3 181 3-275 173-364 (429)
82 cd04106 Rab23_lke Rab23-like s 99.6 6.1E-15 1.3E-19 126.7 14.4 83 3-107 1-85 (162)
83 cd01862 Rab7 Rab7 subfamily. 99.6 6.1E-15 1.3E-19 127.8 14.4 83 3-107 1-83 (172)
84 PRK03003 GTP-binding protein D 99.6 3.2E-15 7E-20 151.0 14.6 89 3-108 39-129 (472)
85 cd01860 Rab5_related Rab5-rela 99.6 6.9E-15 1.5E-19 126.5 14.5 83 3-107 2-84 (163)
86 cd04121 Rab40 Rab40 subfamily. 99.6 2.8E-15 6E-20 133.5 12.3 153 3-248 7-159 (189)
87 cd04120 Rab12 Rab12 subfamily. 99.6 3.6E-15 7.8E-20 134.1 12.9 163 3-257 1-164 (202)
88 PLN03118 Rab family protein; P 99.6 5.4E-15 1.2E-19 133.6 14.0 83 2-107 14-96 (211)
89 cd04123 Rab21 Rab21 subfamily. 99.6 8E-15 1.7E-19 125.4 14.3 83 3-107 1-83 (162)
90 cd04158 ARD1 ARD1 subfamily. 99.6 2.9E-15 6.3E-20 130.5 11.6 77 4-107 1-77 (169)
91 PRK00093 GTP-binding protein D 99.6 9.6E-15 2.1E-19 146.2 16.4 180 3-275 174-364 (435)
92 COG0218 Predicted GTPase [Gene 99.6 6.8E-15 1.5E-19 129.3 13.4 86 3-108 25-118 (200)
93 cd00154 Rab Rab family. Rab G 99.6 8.9E-15 1.9E-19 124.0 13.9 83 3-107 1-83 (159)
94 PRK00093 GTP-binding protein D 99.6 5.9E-15 1.3E-19 147.7 14.6 89 3-108 2-92 (435)
95 cd04117 Rab15 Rab15 subfamily. 99.6 1.4E-14 3.1E-19 125.2 14.9 83 3-107 1-83 (161)
96 cd04115 Rab33B_Rab33A Rab33B/R 99.6 1.2E-14 2.6E-19 126.6 14.3 84 3-107 3-86 (170)
97 cd04144 Ras2 Ras2 subfamily. 99.6 8E-15 1.7E-19 130.3 13.3 81 4-107 1-81 (190)
98 cd04139 RalA_RalB RalA/RalB su 99.6 1.4E-14 3E-19 124.3 14.4 82 3-107 1-82 (164)
99 cd04116 Rab9 Rab9 subfamily. 99.6 1.4E-14 2.9E-19 125.9 14.5 83 3-107 6-88 (170)
100 cd04146 RERG_RasL11_like RERG/ 99.6 1.1E-14 2.4E-19 125.9 13.7 82 4-107 1-82 (165)
101 PRK00007 elongation factor G; 99.6 7.9E-15 1.7E-19 154.4 15.1 226 3-285 11-260 (693)
102 cd00879 Sar1 Sar1 subfamily. 99.6 1E-14 2.2E-19 129.2 13.3 79 2-107 19-97 (190)
103 PLN03108 Rab family protein; P 99.6 6.8E-15 1.5E-19 133.0 12.1 153 3-247 7-159 (210)
104 KOG1191|consensus 99.6 2.3E-15 4.9E-20 146.6 9.3 89 2-107 268-359 (531)
105 PRK12739 elongation factor G; 99.6 8E-15 1.7E-19 154.4 14.2 226 3-285 9-258 (691)
106 cd04125 RabA_like RabA-like su 99.6 2.1E-14 4.6E-19 127.1 14.8 83 3-107 1-83 (188)
107 cd04177 RSR1 RSR1 subgroup. R 99.6 2.4E-14 5.3E-19 124.3 14.9 82 3-107 2-83 (168)
108 cd04111 Rab39 Rab39 subfamily. 99.6 1.8E-14 4E-19 130.4 14.5 83 3-107 3-86 (211)
109 cd04148 RGK RGK subfamily. Th 99.6 2.4E-14 5.3E-19 130.5 15.3 168 3-285 1-170 (221)
110 cd04140 ARHI_like ARHI subfami 99.6 2.9E-14 6.2E-19 123.5 15.0 82 3-107 2-83 (165)
111 PLN03110 Rab GTPase; Provision 99.6 1.6E-14 3.4E-19 131.3 14.0 83 3-107 13-95 (216)
112 PRK09518 bifunctional cytidyla 99.6 1.4E-14 3E-19 153.2 15.5 88 3-107 276-365 (712)
113 cd04163 Era Era subfamily. Er 99.6 3.2E-14 6.9E-19 121.5 15.0 88 3-107 4-93 (168)
114 cd04110 Rab35 Rab35 subfamily. 99.6 1.2E-14 2.5E-19 130.3 12.6 83 3-107 7-89 (199)
115 PTZ00369 Ras-like protein; Pro 99.6 2.3E-14 5E-19 127.2 14.4 83 3-108 6-88 (189)
116 cd01666 TGS_DRG_C TGS_DRG_C: 99.6 1.7E-15 3.8E-20 113.5 5.9 70 279-360 1-74 (75)
117 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 2.5E-14 5.3E-19 125.2 14.2 82 3-107 3-84 (172)
118 cd00876 Ras Ras family. The R 99.6 2.2E-14 4.8E-19 122.4 13.4 81 4-107 1-81 (160)
119 cd04166 CysN_ATPS CysN_ATPS su 99.6 5E-15 1.1E-19 133.8 9.8 81 4-108 1-112 (208)
120 cd01669 TGS_Ygr210_C TGS_Ygr21 99.6 1.7E-15 3.8E-20 113.9 5.6 64 279-360 1-75 (76)
121 cd04114 Rab30 Rab30 subfamily. 99.6 3.5E-14 7.7E-19 122.9 14.7 83 3-107 8-90 (169)
122 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 3.2E-14 6.9E-19 124.3 14.5 82 4-107 2-83 (170)
123 cd04150 Arf1_5_like Arf1-Arf5- 99.6 2.3E-14 4.9E-19 123.7 13.2 78 3-107 1-78 (159)
124 cd01890 LepA LepA subfamily. 99.6 3.3E-14 7.1E-19 124.4 14.1 84 3-108 1-102 (179)
125 PRK09518 bifunctional cytidyla 99.6 2.9E-14 6.2E-19 150.7 16.3 181 3-276 451-642 (712)
126 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 2.8E-14 6E-19 126.1 13.4 83 2-107 3-86 (183)
127 TIGR03598 GTPase_YsxC ribosome 99.6 1E-14 2.2E-19 128.4 10.5 85 3-107 19-111 (179)
128 cd04154 Arl2 Arl2 subfamily. 99.6 2.6E-14 5.5E-19 124.9 12.9 78 3-107 15-92 (173)
129 cd04118 Rab24 Rab24 subfamily. 99.6 5.6E-14 1.2E-18 124.8 15.2 83 3-107 1-84 (193)
130 PRK04213 GTP-binding protein; 99.6 7.8E-14 1.7E-18 124.8 16.1 84 3-107 10-101 (201)
131 PRK15467 ethanolamine utilizat 99.6 3.1E-14 6.8E-19 123.0 12.9 75 3-108 2-76 (158)
132 TIGR00437 feoB ferrous iron tr 99.6 1.7E-14 3.7E-19 148.9 13.3 81 9-107 1-83 (591)
133 cd00877 Ran Ran (Ras-related n 99.6 2.6E-14 5.6E-19 124.3 12.4 81 3-107 1-83 (166)
134 cd04143 Rhes_like Rhes_like su 99.6 6.7E-14 1.4E-18 129.8 15.7 82 3-107 1-82 (247)
135 cd04101 RabL4 RabL4 (Rab-like4 99.6 6.1E-14 1.3E-18 120.8 14.4 83 3-107 1-86 (164)
136 cd04159 Arl10_like Arl10-like 99.6 4.1E-14 8.9E-19 120.0 13.2 78 4-107 1-78 (159)
137 cd04137 RheB Rheb (Ras Homolog 99.6 4.4E-14 9.6E-19 123.9 13.8 82 3-107 2-83 (180)
138 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 4.4E-14 9.5E-19 123.7 13.4 78 3-107 16-93 (174)
139 cd04156 ARLTS1 ARLTS1 subfamil 99.6 2.8E-14 6.2E-19 122.4 11.9 78 4-107 1-78 (160)
140 cd01889 SelB_euk SelB subfamil 99.6 5.9E-14 1.3E-18 124.9 14.2 96 3-108 1-103 (192)
141 cd00881 GTP_translation_factor 99.6 5.4E-14 1.2E-18 123.5 13.8 81 4-108 1-97 (189)
142 smart00178 SAR Sar1p-like memb 99.6 4.9E-14 1.1E-18 124.7 13.2 78 3-107 18-95 (184)
143 cd04147 Ras_dva Ras-dva subfam 99.6 8.4E-14 1.8E-18 124.6 14.6 81 4-107 1-81 (198)
144 cd01891 TypA_BipA TypA (tyrosi 99.6 9E-14 2E-18 123.9 14.5 83 2-108 2-100 (194)
145 cd04128 Spg1 Spg1p. Spg1p (se 99.6 9.3E-14 2E-18 122.9 14.5 83 3-107 1-83 (182)
146 cd04151 Arl1 Arl1 subfamily. 99.6 6.3E-14 1.4E-18 120.3 13.0 77 4-107 1-77 (158)
147 cd04157 Arl6 Arl6 subfamily. 99.6 5.5E-14 1.2E-18 120.6 12.6 79 4-107 1-79 (162)
148 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 1.1E-13 2.3E-18 119.5 14.4 83 4-108 2-85 (168)
149 KOG0084|consensus 99.5 2.8E-14 6.1E-19 124.0 10.0 152 3-246 10-162 (205)
150 cd04149 Arf6 Arf6 subfamily. 99.5 6.6E-14 1.4E-18 122.1 12.5 78 3-107 10-87 (168)
151 cd00878 Arf_Arl Arf (ADP-ribos 99.5 1.1E-13 2.3E-18 118.7 13.4 78 4-108 1-78 (158)
152 COG0480 FusA Translation elong 99.5 9.7E-14 2.1E-18 144.2 15.5 227 3-285 11-258 (697)
153 PRK00454 engB GTP-binding prot 99.5 1.1E-13 2.5E-18 122.8 13.5 85 3-107 25-117 (196)
154 cd00880 Era_like Era (E. coli 99.5 2.3E-13 5E-18 114.6 14.5 86 7-108 1-87 (163)
155 cd01892 Miro2 Miro2 subfamily. 99.5 1.7E-13 3.7E-18 119.5 13.9 83 3-107 5-88 (169)
156 KOG0092|consensus 99.5 1.9E-13 4.2E-18 118.4 13.8 151 3-247 6-158 (200)
157 cd04162 Arl9_Arfrp2_like Arl9/ 99.5 8.9E-14 1.9E-18 120.7 11.6 78 4-107 1-78 (164)
158 PLN00223 ADP-ribosylation fact 99.5 1.4E-13 3E-18 121.6 13.0 79 3-108 18-96 (181)
159 KOG0078|consensus 99.5 9.4E-14 2E-18 122.3 11.7 164 3-258 13-176 (207)
160 cd01874 Cdc42 Cdc42 subfamily. 99.5 2.6E-13 5.7E-18 119.1 14.6 82 3-107 2-83 (175)
161 PLN03071 GTP-binding nuclear p 99.5 1.9E-13 4.1E-18 124.5 13.9 83 3-107 14-96 (219)
162 cd00157 Rho Rho (Ras homology) 99.5 4.9E-13 1.1E-17 115.7 15.9 82 3-107 1-82 (171)
163 smart00177 ARF ARF-like small 99.5 2.4E-13 5.2E-18 119.2 13.9 78 3-107 14-91 (175)
164 PRK13351 elongation factor G; 99.5 1.6E-13 3.4E-18 144.8 15.1 225 3-285 9-258 (687)
165 cd04161 Arl2l1_Arl13_like Arl2 99.5 1.7E-13 3.7E-18 119.2 12.7 77 4-107 1-77 (167)
166 smart00174 RHO Rho (Ras homolo 99.5 3E-13 6.5E-18 117.7 14.2 80 5-107 1-80 (174)
167 PF00009 GTP_EFTU: Elongation 99.5 7.2E-14 1.6E-18 124.1 10.3 82 3-108 4-105 (188)
168 cd04132 Rho4_like Rho4-like su 99.5 1.4E-13 3E-18 121.5 12.1 82 3-107 1-83 (187)
169 PRK00741 prfC peptide chain re 99.5 1.1E-13 2.3E-18 141.0 12.5 156 3-204 11-190 (526)
170 PF00071 Ras: Ras family; Int 99.5 2.5E-13 5.4E-18 116.7 12.5 148 4-243 1-148 (162)
171 PTZ00133 ADP-ribosylation fact 99.5 3.3E-13 7.2E-18 119.2 13.3 79 2-107 17-95 (182)
172 KOG0080|consensus 99.5 1.9E-13 4E-18 114.9 10.9 170 3-263 12-181 (209)
173 TIGR00487 IF-2 translation ini 99.5 4.3E-13 9.2E-18 138.1 16.0 84 2-108 87-170 (587)
174 cd04135 Tc10 TC10 subfamily. 99.5 8.8E-13 1.9E-17 114.8 15.4 82 3-107 1-82 (174)
175 cd04126 Rab20 Rab20 subfamily. 99.5 3.1E-13 6.8E-18 123.1 12.8 78 3-107 1-78 (220)
176 cd01888 eIF2_gamma eIF2-gamma 99.5 2.7E-13 5.8E-18 122.0 12.1 98 3-107 1-117 (203)
177 cd04133 Rop_like Rop subfamily 99.5 7E-13 1.5E-17 116.7 14.4 82 3-107 2-83 (176)
178 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.5 3.1E-13 6.6E-18 124.0 12.5 82 3-107 14-95 (232)
179 cd04103 Centaurin_gamma Centau 99.5 1E-12 2.2E-17 113.5 15.0 76 3-107 1-76 (158)
180 cd04131 Rnd Rnd subfamily. Th 99.5 2.9E-13 6.4E-18 119.3 11.7 82 3-107 2-83 (178)
181 cd01893 Miro1 Miro1 subfamily. 99.5 1E-12 2.2E-17 114.0 14.6 81 3-107 1-81 (166)
182 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.5 8.4E-13 1.8E-17 116.8 14.2 83 2-107 5-87 (182)
183 KOG0098|consensus 99.5 2.9E-13 6.2E-18 116.6 10.6 154 3-248 7-160 (216)
184 PRK05306 infB translation init 99.5 7.1E-13 1.5E-17 139.8 15.9 83 2-108 290-372 (787)
185 cd04130 Wrch_1 Wrch-1 subfamil 99.5 1.2E-12 2.5E-17 114.3 14.8 82 3-107 1-82 (173)
186 PRK12317 elongation factor 1-a 99.5 2E-13 4.4E-18 136.2 11.1 81 3-107 7-118 (425)
187 cd01884 EF_Tu EF-Tu subfamily. 99.5 1.8E-13 3.9E-18 122.4 9.6 82 3-108 3-100 (195)
188 cd04155 Arl3 Arl3 subfamily. 99.5 5.9E-13 1.3E-17 115.7 12.6 78 3-107 15-92 (173)
189 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 7.7E-13 1.7E-17 118.3 13.5 88 3-107 1-94 (196)
190 KOG0394|consensus 99.5 3.7E-13 8E-18 115.7 10.7 167 3-257 10-179 (210)
191 TIGR02528 EutP ethanolamine ut 99.5 4.1E-13 8.8E-18 113.1 10.7 74 3-108 1-74 (142)
192 TIGR00231 small_GTP small GTP- 99.5 8.4E-13 1.8E-17 111.2 12.7 82 3-106 2-83 (161)
193 cd01875 RhoG RhoG subfamily. 99.5 1.3E-12 2.8E-17 116.3 14.4 82 3-107 4-85 (191)
194 cd01871 Rac1_like Rac1-like su 99.5 1.9E-12 4.1E-17 113.6 14.9 82 3-107 2-83 (174)
195 cd04134 Rho3 Rho3 subfamily. 99.5 9.2E-13 2E-17 117.0 12.7 82 3-107 1-82 (189)
196 PF00025 Arf: ADP-ribosylation 99.5 2E-12 4.4E-17 113.6 14.7 79 3-108 15-93 (175)
197 KOG0087|consensus 99.4 1.1E-12 2.3E-17 115.3 12.4 152 3-246 15-166 (222)
198 cd01883 EF1_alpha Eukaryotic e 99.4 3.4E-13 7.5E-18 122.8 9.1 81 4-108 1-112 (219)
199 TIGR00475 selB selenocysteine- 99.4 8.9E-13 1.9E-17 136.1 13.1 82 3-108 1-85 (581)
200 CHL00189 infB translation init 99.4 1.2E-12 2.5E-17 137.1 13.8 85 2-108 244-330 (742)
201 KOG0094|consensus 99.4 2.4E-12 5.1E-17 111.8 13.2 154 3-248 23-177 (221)
202 cd01870 RhoA_like RhoA-like su 99.4 4.8E-12 1.1E-16 110.2 15.4 82 3-107 2-83 (175)
203 KOG0073|consensus 99.4 3.1E-12 6.7E-17 108.0 13.3 146 1-243 15-165 (185)
204 cd01876 YihA_EngB The YihA (En 99.4 2.4E-12 5.2E-17 110.2 12.1 84 4-107 1-92 (170)
205 KOG1423|consensus 99.4 2.7E-12 5.8E-17 118.7 11.8 89 3-108 73-167 (379)
206 smart00176 RAN Ran (Ras-relate 99.4 2.2E-12 4.7E-17 115.9 10.6 78 8-107 1-78 (200)
207 PRK10512 selenocysteinyl-tRNA- 99.4 3.3E-12 7.2E-17 132.3 13.5 83 3-108 1-86 (614)
208 cd04129 Rho2 Rho2 subfamily. 99.4 1E-11 2.2E-16 110.1 14.0 82 3-107 2-83 (187)
209 KOG1490|consensus 99.4 1.9E-12 4.2E-17 126.3 9.9 157 3-248 169-333 (620)
210 cd01873 RhoBTB RhoBTB subfamil 99.4 1.1E-11 2.3E-16 111.0 13.8 81 3-107 3-98 (195)
211 TIGR01393 lepA GTP-binding pro 99.4 9E-12 2E-16 128.8 14.2 84 3-108 4-105 (595)
212 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.3 9.1E-12 2E-16 113.6 12.2 82 3-107 2-83 (222)
213 cd00882 Ras_like_GTPase Ras-li 99.3 1.9E-11 4.1E-16 101.5 13.2 80 7-108 1-80 (157)
214 TIGR01394 TypA_BipA GTP-bindin 99.3 1.5E-11 3.3E-16 126.9 14.6 82 3-108 2-99 (594)
215 PRK09866 hypothetical protein; 99.3 2.8E-11 6.1E-16 122.8 15.5 35 3-37 70-105 (741)
216 TIGR00483 EF-1_alpha translati 99.3 6.9E-12 1.5E-16 125.3 10.7 82 3-108 8-120 (426)
217 cd04104 p47_IIGP_like p47 (47- 99.3 2.8E-11 6.1E-16 108.3 13.5 82 2-105 1-89 (197)
218 PRK10218 GTP-binding protein; 99.3 3.6E-11 7.8E-16 124.2 16.0 82 3-108 6-103 (607)
219 PTZ00132 GTP-binding nuclear p 99.3 4.3E-11 9.2E-16 108.4 14.7 82 2-107 9-92 (215)
220 PF10662 PduV-EutP: Ethanolami 99.3 1.7E-11 3.7E-16 103.2 10.7 133 3-245 2-135 (143)
221 CHL00071 tufA elongation facto 99.3 1.1E-11 2.4E-16 123.2 11.0 82 3-108 13-110 (409)
222 TIGR03680 eif2g_arch translati 99.3 1.1E-11 2.5E-16 122.9 10.7 99 3-108 5-115 (406)
223 TIGR02034 CysN sulfate adenyly 99.3 9.6E-12 2.1E-16 123.4 9.5 82 3-108 1-115 (406)
224 KOG0079|consensus 99.3 1E-11 2.2E-16 103.1 7.9 153 3-248 9-161 (198)
225 KOG0075|consensus 99.3 4.1E-12 9E-17 105.3 5.6 80 3-108 21-100 (186)
226 PRK04000 translation initiatio 99.3 2.5E-11 5.5E-16 120.5 11.7 99 3-108 10-120 (411)
227 PRK05433 GTP-binding protein L 99.3 5.1E-11 1.1E-15 123.4 14.2 84 3-108 8-109 (600)
228 KOG0465|consensus 99.3 1.7E-11 3.7E-16 122.1 9.7 226 3-285 40-288 (721)
229 PRK05124 cysN sulfate adenylyl 99.3 1.8E-11 3.9E-16 123.6 10.0 82 3-108 28-142 (474)
230 PRK05506 bifunctional sulfate 99.3 1.2E-11 2.6E-16 129.4 8.8 82 3-108 25-139 (632)
231 PRK12740 elongation factor G; 99.3 6.6E-11 1.4E-15 124.7 14.4 220 8-285 1-242 (668)
232 KOG0086|consensus 99.3 2.2E-11 4.9E-16 101.6 8.4 152 3-246 10-161 (214)
233 PRK12736 elongation factor Tu; 99.2 5.8E-11 1.3E-15 117.4 12.7 82 3-108 13-110 (394)
234 cd01853 Toc34_like Toc34-like 99.2 4.1E-11 8.9E-16 111.1 10.9 88 2-106 31-124 (249)
235 TIGR00485 EF-Tu translation el 99.2 4.5E-11 9.7E-16 118.3 11.3 82 3-108 13-110 (394)
236 TIGR00491 aIF-2 translation in 99.2 1.1E-10 2.5E-15 120.1 14.7 98 2-108 4-104 (590)
237 PRK12735 elongation factor Tu; 99.2 6.8E-11 1.5E-15 117.0 12.4 82 3-108 13-110 (396)
238 KOG0093|consensus 99.2 3.9E-11 8.5E-16 99.6 8.7 154 3-248 22-175 (193)
239 cd04102 RabL3 RabL3 (Rab-like3 99.2 2.2E-10 4.9E-15 103.0 14.1 89 3-108 1-89 (202)
240 KOG0095|consensus 99.2 4.9E-11 1.1E-15 99.2 8.8 84 3-108 8-91 (213)
241 COG2229 Predicted GTPase [Gene 99.2 2.4E-10 5.3E-15 98.7 13.2 84 2-108 10-103 (187)
242 TIGR00503 prfC peptide chain r 99.2 2.3E-11 5E-16 124.0 7.8 157 3-205 12-192 (527)
243 PF08477 Miro: Miro-like prote 99.2 4.8E-11 1E-15 97.3 8.0 80 4-107 1-84 (119)
244 TIGR02836 spore_IV_A stage IV 99.2 5E-10 1.1E-14 108.6 15.9 93 3-107 18-156 (492)
245 cd04105 SR_beta Signal recogni 99.2 9.5E-11 2.1E-15 105.5 10.4 82 4-108 2-84 (203)
246 PLN03127 Elongation factor Tu; 99.2 1.2E-10 2.7E-15 116.6 12.1 82 3-108 62-159 (447)
247 cd01885 EF2 EF2 (for archaea a 99.2 1.6E-10 3.5E-15 105.3 11.8 92 3-108 1-108 (222)
248 KOG0410|consensus 99.2 2.3E-11 4.9E-16 113.3 6.1 89 3-109 179-270 (410)
249 PLN00023 GTP-binding protein; 99.2 3.3E-10 7.1E-15 107.8 13.5 96 3-107 22-117 (334)
250 PRK00049 elongation factor Tu; 99.2 1.3E-10 2.7E-15 115.1 11.0 82 3-108 13-110 (396)
251 COG3596 Predicted GTPase [Gene 99.2 2.9E-10 6.3E-15 104.3 12.0 89 2-107 39-128 (296)
252 TIGR00991 3a0901s02IAP34 GTP-b 99.2 3.6E-10 7.9E-15 106.8 13.0 83 3-106 39-128 (313)
253 cd01850 CDC_Septin CDC/Septin. 99.2 5.4E-10 1.2E-14 105.3 14.2 64 3-81 5-78 (276)
254 KOG0097|consensus 99.2 1.7E-10 3.7E-15 95.1 9.3 151 3-246 12-163 (215)
255 PLN03126 Elongation factor Tu; 99.2 1.5E-10 3.2E-15 116.7 10.7 82 3-108 82-179 (478)
256 PRK04004 translation initiatio 99.2 4.1E-10 8.9E-15 116.3 14.0 98 2-108 6-106 (586)
257 PLN00043 elongation factor 1-a 99.1 1.4E-10 3E-15 116.3 9.9 82 3-108 8-120 (447)
258 cd04165 GTPBP1_like GTPBP1-lik 99.1 5.9E-10 1.3E-14 101.9 13.1 22 4-25 1-22 (224)
259 PTZ00141 elongation factor 1- 99.1 1.6E-10 3.4E-15 115.9 9.9 82 3-108 8-120 (446)
260 cd04167 Snu114p Snu114p subfam 99.1 3.9E-10 8.4E-15 102.1 11.6 87 3-108 1-106 (213)
261 KOG0088|consensus 99.1 2.1E-10 4.6E-15 96.4 6.7 162 2-257 13-176 (218)
262 PTZ00327 eukaryotic translatio 99.1 8.3E-10 1.8E-14 110.7 12.0 98 3-107 35-151 (460)
263 PLN00116 translation elongatio 99.1 7.3E-10 1.6E-14 119.2 12.3 143 3-169 20-186 (843)
264 PF04548 AIG1: AIG1 family; I 99.1 8.9E-09 1.9E-13 93.3 17.4 88 3-107 1-94 (212)
265 PTZ00416 elongation factor 2; 99.1 1.8E-09 3.9E-14 116.0 14.7 141 3-173 20-184 (836)
266 PF09439 SRPRB: Signal recogni 99.1 1.3E-09 2.7E-14 95.8 10.5 80 3-107 4-86 (181)
267 KOG0070|consensus 99.0 2E-09 4.2E-14 93.2 10.2 79 3-108 18-96 (181)
268 KOG0462|consensus 99.0 2.1E-09 4.5E-14 106.4 11.3 148 3-245 61-224 (650)
269 PF00350 Dynamin_N: Dynamin fa 99.0 4.1E-09 8.8E-14 91.3 11.3 100 5-108 1-140 (168)
270 KOG1145|consensus 99.0 3.3E-09 7.2E-14 105.0 11.2 83 3-108 154-236 (683)
271 KOG0395|consensus 99.0 2.9E-09 6.3E-14 95.2 9.7 82 3-107 4-85 (196)
272 cd01882 BMS1 Bms1. Bms1 is an 99.0 7.6E-09 1.7E-13 94.6 12.6 73 3-108 40-115 (225)
273 KOG0091|consensus 98.9 1.4E-09 3.1E-14 91.9 6.3 154 3-247 9-164 (213)
274 COG1100 GTPase SAR1 and relate 98.9 6.8E-09 1.5E-13 93.7 11.3 83 3-107 6-88 (219)
275 smart00053 DYNc Dynamin, GTPas 98.9 2E-08 4.3E-13 92.5 14.1 105 3-107 27-173 (240)
276 KOG0083|consensus 98.9 2.3E-10 5E-15 93.5 1.2 147 7-245 2-149 (192)
277 cd01858 NGP_1 NGP-1. Autoanti 98.9 1.2E-09 2.5E-14 94.2 5.6 54 3-76 103-157 (157)
278 COG5256 TEF1 Translation elong 98.9 9.6E-09 2.1E-13 99.2 9.3 83 3-109 8-121 (428)
279 COG3276 SelB Selenocysteine-sp 98.9 2.1E-08 4.5E-13 97.6 11.5 82 3-108 1-85 (447)
280 cd01849 YlqF_related_GTPase Yl 98.9 4.2E-09 9.2E-14 90.5 6.1 54 3-76 101-155 (155)
281 COG0532 InfB Translation initi 98.8 2.2E-08 4.7E-13 99.6 11.2 86 2-108 5-90 (509)
282 PRK13768 GTPase; Provisional 98.8 2.9E-08 6.3E-13 92.4 10.6 41 66-107 97-139 (253)
283 COG1161 Predicted GTPases [Gen 98.8 6.9E-09 1.5E-13 99.8 6.6 59 3-81 133-192 (322)
284 PRK09563 rbgA GTPase YlqF; Rev 98.8 1E-08 2.2E-13 97.3 7.0 59 3-81 122-181 (287)
285 TIGR00993 3a0901s04IAP86 chlor 98.8 1.9E-08 4.2E-13 102.7 9.1 88 3-107 119-212 (763)
286 COG0481 LepA Membrane GTPase L 98.8 3.2E-08 7E-13 96.7 10.1 89 3-110 10-113 (603)
287 KOG0464|consensus 98.8 1.5E-08 3.2E-13 97.3 7.2 201 3-260 38-268 (753)
288 KOG0071|consensus 98.7 1.5E-07 3.2E-12 77.9 11.6 79 3-108 18-96 (180)
289 TIGR03596 GTPase_YlqF ribosome 98.7 1.6E-08 3.4E-13 95.4 6.5 58 3-80 119-177 (276)
290 COG4917 EutP Ethanolamine util 98.7 8.7E-08 1.9E-12 77.9 9.7 129 3-241 2-131 (148)
291 COG4108 PrfC Peptide chain rel 98.7 3.4E-08 7.4E-13 95.7 8.3 148 3-199 13-187 (528)
292 TIGR00490 aEF-2 translation el 98.7 1.6E-08 3.5E-13 107.3 6.7 85 3-109 20-122 (720)
293 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 1.9E-08 4.2E-13 85.0 5.9 54 4-77 85-139 (141)
294 PF04670 Gtr1_RagA: Gtr1/RagA 98.7 4E-07 8.6E-12 83.4 14.6 86 4-107 1-87 (232)
295 PF02824 TGS: TGS domain; Int 98.7 2.7E-08 5.9E-13 71.5 5.2 59 280-360 1-59 (60)
296 KOG1424|consensus 98.7 1.3E-08 2.9E-13 100.2 4.1 59 3-81 315-374 (562)
297 KOG0081|consensus 98.7 4.3E-08 9.4E-13 82.6 6.4 160 4-245 11-170 (219)
298 KOG0076|consensus 98.7 4.3E-08 9.3E-13 84.0 6.2 82 3-108 18-104 (197)
299 PTZ00099 rab6; Provisional 98.7 1.9E-07 4E-12 82.2 10.4 35 66-107 29-63 (176)
300 COG1217 TypA Predicted membran 98.6 2.3E-07 5E-12 90.6 11.5 84 3-110 6-105 (603)
301 KOG0090|consensus 98.6 1.1E-07 2.4E-12 84.2 8.2 78 3-107 39-119 (238)
302 PF05049 IIGP: Interferon-indu 98.6 1.4E-07 3E-12 91.7 9.3 83 2-106 35-124 (376)
303 cd01856 YlqF YlqF. Proteins o 98.6 7.8E-08 1.7E-12 84.0 6.6 54 3-76 116-170 (171)
304 TIGR03597 GTPase_YqeH ribosome 98.6 6.4E-08 1.4E-12 94.6 6.2 57 3-79 155-217 (360)
305 PRK07560 elongation factor EF- 98.6 6.3E-08 1.4E-12 103.0 6.4 113 3-153 21-152 (731)
306 COG5257 GCD11 Translation init 98.6 3.9E-07 8.5E-12 85.4 10.4 163 3-244 11-190 (415)
307 PRK13796 GTPase YqeH; Provisio 98.5 1.2E-07 2.6E-12 92.8 5.7 56 3-78 161-222 (365)
308 PF08438 MMR_HSR1_C: GTPase of 98.5 4.8E-07 1.1E-11 72.5 6.9 76 205-285 1-107 (109)
309 PF00735 Septin: Septin; Inte 98.4 3.3E-06 7.2E-11 79.7 13.1 25 3-27 5-29 (281)
310 KOG0458|consensus 98.4 1.2E-06 2.5E-11 87.9 10.3 37 66-109 255-291 (603)
311 COG1120 FepC ABC-type cobalami 98.4 2.7E-07 5.8E-12 85.4 5.3 68 3-81 29-104 (258)
312 cd01851 GBP Guanylate-binding 98.4 7.6E-07 1.7E-11 81.4 7.4 89 4-107 9-102 (224)
313 KOG1673|consensus 98.4 1.1E-06 2.3E-11 74.1 7.4 145 2-239 20-169 (205)
314 cd01859 MJ1464 MJ1464. This f 98.4 5.7E-07 1.2E-11 77.1 5.9 54 3-76 102-156 (156)
315 PRK09435 membrane ATPase/prote 98.4 2E-06 4.4E-11 82.8 10.2 22 3-24 57-78 (332)
316 KOG0077|consensus 98.4 1.2E-06 2.6E-11 74.7 7.1 78 3-107 21-98 (193)
317 KOG1707|consensus 98.3 1.2E-06 2.6E-11 87.8 8.0 79 3-108 10-91 (625)
318 KOG0461|consensus 98.3 3.3E-06 7.2E-11 79.8 10.2 91 3-108 8-105 (522)
319 PRK12288 GTPase RsgA; Reviewed 98.3 6E-07 1.3E-11 87.2 5.3 57 4-80 207-271 (347)
320 PRK12289 GTPase RsgA; Reviewed 98.3 5.4E-07 1.2E-11 87.6 4.9 58 4-81 174-239 (352)
321 PRK14845 translation initiatio 98.3 6.6E-06 1.4E-10 89.6 12.8 82 14-108 473-561 (1049)
322 TIGR00750 lao LAO/AO transport 98.3 1.9E-06 4.2E-11 82.2 7.8 22 3-24 35-56 (300)
323 KOG4252|consensus 98.2 3.8E-07 8.3E-12 78.5 1.6 83 3-107 21-103 (246)
324 PF03193 DUF258: Protein of un 98.2 9.1E-07 2E-11 76.3 3.8 23 3-25 36-58 (161)
325 KOG3883|consensus 98.2 3E-05 6.6E-10 65.3 12.6 85 3-107 10-95 (198)
326 TIGR00157 ribosome small subun 98.2 1.5E-06 3.3E-11 80.5 5.5 57 3-80 121-185 (245)
327 KOG0074|consensus 98.2 5.9E-06 1.3E-10 68.7 7.8 78 3-107 18-96 (185)
328 KOG0468|consensus 98.2 5.7E-06 1.2E-10 83.9 8.9 89 3-110 129-234 (971)
329 cd01855 YqeH YqeH. YqeH is an 98.2 2.3E-06 4.9E-11 76.0 5.6 23 3-25 128-150 (190)
330 PRK00098 GTPase RsgA; Reviewed 98.2 2.2E-06 4.8E-11 81.7 5.6 23 3-25 165-187 (298)
331 KOG2484|consensus 98.2 1.2E-06 2.6E-11 84.2 3.8 61 2-82 252-313 (435)
332 KOG1547|consensus 98.2 3E-05 6.5E-10 70.2 12.4 65 3-82 47-120 (336)
333 KOG0072|consensus 98.1 3.3E-06 7.2E-11 70.3 5.2 79 3-108 19-97 (182)
334 KOG0393|consensus 98.1 1.4E-05 3.1E-10 70.8 9.4 81 3-106 5-86 (198)
335 COG4559 ABC-type hemin transpo 98.1 3E-06 6.5E-11 75.5 3.6 64 4-78 29-100 (259)
336 COG0411 LivG ABC-type branched 98.1 8.6E-07 1.9E-11 80.5 0.2 41 3-54 31-71 (250)
337 PF03029 ATP_bind_1: Conserved 98.1 7.5E-06 1.6E-10 75.5 6.3 41 66-107 91-133 (238)
338 KOG1144|consensus 98.0 1.3E-05 2.9E-10 82.2 7.9 97 3-109 476-576 (1064)
339 cd01854 YjeQ_engC YjeQ/EngC. 98.0 6.5E-06 1.4E-10 78.1 5.3 23 3-25 162-184 (287)
340 KOG2423|consensus 98.0 2.3E-06 5E-11 82.2 2.1 59 3-81 308-367 (572)
341 COG0050 TufB GTPases - transla 98.0 3.5E-05 7.6E-10 71.7 9.3 83 3-109 13-111 (394)
342 KOG2485|consensus 98.0 9.2E-06 2E-10 76.1 5.5 65 2-83 143-213 (335)
343 TIGR00073 hypB hydrogenase acc 98.0 4.7E-05 1E-09 68.6 9.7 23 3-25 23-45 (207)
344 COG1162 Predicted GTPases [Gen 98.0 7.5E-06 1.6E-10 77.0 4.3 23 3-25 165-187 (301)
345 COG5019 CDC3 Septin family pro 98.0 0.00014 3E-09 69.8 12.9 67 3-82 24-98 (373)
346 PF03308 ArgK: ArgK protein; 97.9 0.00014 3.1E-09 67.0 12.0 22 3-24 30-51 (266)
347 COG1121 ZnuC ABC-type Mn/Zn tr 97.9 6.1E-06 1.3E-10 76.1 2.9 36 4-50 32-67 (254)
348 TIGR00691 spoT_relA (p)ppGpp s 97.9 4.2E-05 9.2E-10 80.7 9.1 63 278-362 360-422 (683)
349 KOG0448|consensus 97.9 0.00011 2.4E-09 75.2 11.6 101 2-106 109-242 (749)
350 PRK10463 hydrogenase nickel in 97.9 8.4E-05 1.8E-09 70.1 10.0 23 3-25 105-127 (290)
351 KOG1954|consensus 97.9 6.4E-05 1.4E-09 71.9 8.9 102 4-107 60-192 (532)
352 COG4604 CeuD ABC-type enteroch 97.9 9E-06 1.9E-10 71.8 2.9 67 4-81 29-103 (252)
353 COG3839 MalK ABC-type sugar tr 97.8 7.9E-06 1.7E-10 78.5 2.5 40 4-54 31-70 (338)
354 PRK10872 relA (p)ppGpp synthet 97.8 5.3E-05 1.1E-09 79.9 8.6 63 278-362 404-466 (743)
355 COG1116 TauB ABC-type nitrate/ 97.8 1.6E-05 3.4E-10 72.7 4.1 36 4-50 31-66 (248)
356 PF00005 ABC_tran: ABC transpo 97.8 2.2E-05 4.7E-10 65.5 4.5 38 2-50 11-48 (137)
357 COG1134 TagH ABC-type polysacc 97.8 2.3E-05 4.9E-10 71.4 4.4 36 3-49 54-89 (249)
358 COG2895 CysN GTPases - Sulfate 97.8 9.8E-05 2.1E-09 70.4 8.5 66 196-261 136-215 (431)
359 COG1136 SalX ABC-type antimicr 97.8 2.7E-05 5.9E-10 70.8 4.2 35 4-49 33-67 (226)
360 COG0410 LivF ABC-type branched 97.7 3.1E-05 6.8E-10 69.9 4.4 38 3-51 30-67 (237)
361 cd03222 ABC_RNaseL_inhibitor T 97.7 3.4E-05 7.4E-10 67.9 4.5 36 3-49 26-61 (177)
362 COG3840 ThiQ ABC-type thiamine 97.7 3.1E-05 6.8E-10 67.6 4.1 36 3-49 26-61 (231)
363 cd03261 ABC_Org_Solvent_Resist 97.7 3.9E-05 8.6E-10 70.3 4.8 36 3-49 27-62 (235)
364 TIGR00960 3a0501s02 Type II (G 97.7 4E-05 8.8E-10 69.3 4.7 36 3-49 30-65 (216)
365 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.7 4.3E-05 9.4E-10 69.1 4.7 36 3-49 31-66 (218)
366 COG4148 ModC ABC-type molybdat 97.7 0.00023 5E-09 66.1 9.3 35 4-49 26-60 (352)
367 cd03226 ABC_cobalt_CbiO_domain 97.7 4.7E-05 1E-09 68.3 4.7 36 3-49 27-62 (205)
368 TIGR01166 cbiO cobalt transpor 97.7 4.8E-05 1E-09 67.4 4.7 36 3-49 19-54 (190)
369 cd03225 ABC_cobalt_CbiO_domain 97.7 4.4E-05 9.6E-10 68.7 4.4 36 3-49 28-63 (211)
370 cd03259 ABC_Carb_Solutes_like 97.7 4.9E-05 1.1E-09 68.6 4.7 36 3-49 27-62 (213)
371 TIGR03608 L_ocin_972_ABC putat 97.7 5.3E-05 1.2E-09 67.9 4.7 36 3-49 25-60 (206)
372 cd03264 ABC_drug_resistance_li 97.7 4.6E-05 9.9E-10 68.7 4.3 35 4-49 27-61 (211)
373 cd03265 ABC_DrrA DrrA is the A 97.7 5.5E-05 1.2E-09 68.6 4.8 36 3-49 27-62 (220)
374 PRK13540 cytochrome c biogenes 97.6 6.1E-05 1.3E-09 67.4 4.9 37 3-50 28-64 (200)
375 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.6 6.2E-05 1.3E-09 63.9 4.6 35 3-48 27-61 (144)
376 COG3842 PotA ABC-type spermidi 97.6 2.7E-05 5.8E-10 75.3 2.6 39 5-54 34-72 (352)
377 TIGR02673 FtsE cell division A 97.6 5.6E-05 1.2E-09 68.2 4.6 36 3-49 29-64 (214)
378 cd03269 ABC_putative_ATPase Th 97.6 6.1E-05 1.3E-09 67.8 4.8 36 3-49 27-62 (210)
379 PF05783 DLIC: Dynein light in 97.6 0.0025 5.5E-08 64.3 16.7 92 199-313 196-300 (472)
380 cd03218 ABC_YhbG The ABC trans 97.6 5.6E-05 1.2E-09 69.1 4.5 36 3-49 27-62 (232)
381 cd03292 ABC_FtsE_transporter F 97.6 6.5E-05 1.4E-09 67.7 4.8 36 3-49 28-63 (214)
382 cd03262 ABC_HisP_GlnQ_permease 97.6 5.8E-05 1.3E-09 68.0 4.5 36 3-49 27-62 (213)
383 TIGR02211 LolD_lipo_ex lipopro 97.6 5.9E-05 1.3E-09 68.4 4.6 36 3-49 32-67 (221)
384 cd03263 ABC_subfamily_A The AB 97.6 6E-05 1.3E-09 68.3 4.6 36 3-49 29-64 (220)
385 COG1131 CcmA ABC-type multidru 97.6 5.3E-05 1.1E-09 72.1 4.3 35 4-49 33-67 (293)
386 PRK13541 cytochrome c biogenes 97.6 6.5E-05 1.4E-09 66.9 4.6 36 3-49 27-62 (195)
387 cd03293 ABC_NrtD_SsuB_transpor 97.6 6.9E-05 1.5E-09 68.0 4.8 36 3-49 31-66 (220)
388 COG1124 DppF ABC-type dipeptid 97.6 0.00083 1.8E-08 61.3 11.6 36 3-49 34-69 (252)
389 cd03224 ABC_TM1139_LivF_branch 97.6 6.1E-05 1.3E-09 68.3 4.3 36 3-49 27-62 (222)
390 cd03257 ABC_NikE_OppD_transpor 97.6 6.3E-05 1.4E-09 68.5 4.4 36 3-49 32-67 (228)
391 COG3638 ABC-type phosphate/pho 97.6 6.1E-05 1.3E-09 68.3 4.2 36 4-50 32-67 (258)
392 PRK11629 lolD lipoprotein tran 97.6 7.2E-05 1.6E-09 68.5 4.8 36 3-49 36-71 (233)
393 COG1101 PhnK ABC-type uncharac 97.6 5.8E-05 1.3E-09 67.6 3.8 35 5-50 35-69 (263)
394 cd03215 ABC_Carb_Monos_II This 97.6 7.2E-05 1.6E-09 65.9 4.5 36 3-49 27-62 (182)
395 cd03235 ABC_Metallic_Cations A 97.6 6.4E-05 1.4E-09 67.8 4.2 36 3-49 26-61 (213)
396 cd03216 ABC_Carb_Monos_I This 97.6 8.4E-05 1.8E-09 64.4 4.8 37 3-50 27-63 (163)
397 cd03266 ABC_NatA_sodium_export 97.6 7.3E-05 1.6E-09 67.6 4.5 36 3-49 32-67 (218)
398 TIGR01188 drrA daunorubicin re 97.6 7.5E-05 1.6E-09 71.3 4.8 36 3-49 20-55 (302)
399 PRK13543 cytochrome c biogenes 97.6 8E-05 1.7E-09 67.4 4.7 36 3-49 38-73 (214)
400 cd03229 ABC_Class3 This class 97.6 8.5E-05 1.8E-09 65.2 4.8 36 3-49 27-62 (178)
401 TIGR02315 ABC_phnC phosphonate 97.6 7.7E-05 1.7E-09 68.7 4.6 36 3-49 29-64 (243)
402 cd03296 ABC_CysA_sulfate_impor 97.6 8.1E-05 1.7E-09 68.5 4.8 36 3-49 29-64 (239)
403 TIGR01189 ccmA heme ABC export 97.6 8.1E-05 1.8E-09 66.4 4.6 36 3-49 27-62 (198)
404 cd03258 ABC_MetN_methionine_tr 97.6 7.5E-05 1.6E-09 68.3 4.5 36 3-49 32-67 (233)
405 KOG2486|consensus 97.6 0.00038 8.1E-09 64.5 8.9 85 3-107 137-230 (320)
406 PRK11248 tauB taurine transpor 97.6 7.6E-05 1.6E-09 69.5 4.5 36 3-49 28-63 (255)
407 cd03268 ABC_BcrA_bacitracin_re 97.6 8.6E-05 1.9E-09 66.7 4.8 36 3-49 27-62 (208)
408 PRK10908 cell division protein 97.6 8.7E-05 1.9E-09 67.4 4.8 36 3-49 29-64 (222)
409 cd03219 ABC_Mj1267_LivG_branch 97.6 7.4E-05 1.6E-09 68.4 4.4 36 3-49 27-62 (236)
410 cd03301 ABC_MalK_N The N-termi 97.6 8.7E-05 1.9E-09 66.9 4.8 36 3-49 27-62 (213)
411 TIGR03864 PQQ_ABC_ATP ABC tran 97.6 8.8E-05 1.9E-09 68.1 4.8 36 3-49 28-63 (236)
412 cd03260 ABC_PstB_phosphate_tra 97.6 8.4E-05 1.8E-09 67.7 4.7 36 3-49 27-67 (227)
413 COG1127 Ttg2A ABC-type transpo 97.6 5.6E-05 1.2E-09 68.7 3.3 42 4-56 36-77 (263)
414 KOG4423|consensus 97.6 4.5E-06 9.6E-11 72.5 -3.6 158 3-247 26-185 (229)
415 PRK10584 putative ABC transpor 97.6 8.9E-05 1.9E-09 67.6 4.7 36 3-49 37-72 (228)
416 TIGR03410 urea_trans_UrtE urea 97.6 7.8E-05 1.7E-09 68.1 4.4 36 3-49 27-62 (230)
417 cd03214 ABC_Iron-Siderophores_ 97.6 8.8E-05 1.9E-09 65.2 4.5 36 3-49 26-61 (180)
418 cd03231 ABC_CcmA_heme_exporter 97.5 9.3E-05 2E-09 66.3 4.5 36 3-49 27-62 (201)
419 PRK15056 manganese/iron transp 97.5 9.4E-05 2E-09 69.5 4.7 37 3-50 34-70 (272)
420 PRK10895 lipopolysaccharide AB 97.5 9.1E-05 2E-09 68.2 4.5 36 3-49 30-65 (241)
421 cd03298 ABC_ThiQ_thiamine_tran 97.5 9.6E-05 2.1E-09 66.6 4.6 36 3-49 25-60 (211)
422 PRK13539 cytochrome c biogenes 97.5 9.7E-05 2.1E-09 66.5 4.6 36 3-49 29-64 (207)
423 cd03256 ABC_PhnC_transporter A 97.5 9.6E-05 2.1E-09 67.9 4.6 36 3-49 28-63 (241)
424 PRK13641 cbiO cobalt transport 97.5 9.5E-05 2.1E-09 70.1 4.7 36 3-49 34-69 (287)
425 COG1126 GlnQ ABC-type polar am 97.5 0.0001 2.2E-09 66.1 4.5 36 3-49 29-64 (240)
426 TIGR01184 ntrCD nitrate transp 97.5 9.7E-05 2.1E-09 67.6 4.5 36 3-49 12-47 (230)
427 PRK13638 cbiO cobalt transport 97.5 9.4E-05 2E-09 69.4 4.5 36 3-49 28-63 (271)
428 cd03267 ABC_NatA_like Similar 97.5 0.00011 2.3E-09 67.6 4.8 35 3-48 48-82 (236)
429 TIGR01288 nodI ATP-binding ABC 97.5 0.0001 2.2E-09 70.4 4.8 36 3-49 31-66 (303)
430 PRK11124 artP arginine transpo 97.5 0.00011 2.4E-09 67.7 4.8 36 3-49 29-64 (242)
431 PRK13538 cytochrome c biogenes 97.5 0.0001 2.2E-09 66.1 4.5 36 3-49 28-63 (204)
432 cd03230 ABC_DR_subfamily_A Thi 97.5 0.00012 2.5E-09 64.0 4.7 36 3-49 27-62 (173)
433 PRK14250 phosphate ABC transpo 97.5 0.0001 2.3E-09 67.9 4.6 36 3-49 30-65 (241)
434 PRK09493 glnQ glutamine ABC tr 97.5 0.00011 2.4E-09 67.5 4.8 36 3-49 28-63 (240)
435 PRK13652 cbiO cobalt transport 97.5 0.00011 2.4E-09 69.3 4.8 36 3-49 31-66 (277)
436 PRK13536 nodulation factor exp 97.5 0.00011 2.3E-09 71.4 4.8 36 3-49 68-103 (340)
437 PRK13537 nodulation ABC transp 97.5 0.00011 2.4E-09 70.4 4.8 36 3-49 34-69 (306)
438 PRK11264 putative amino-acid A 97.5 0.00011 2.5E-09 67.9 4.8 36 3-49 30-65 (250)
439 cd03295 ABC_OpuCA_Osmoprotecti 97.5 0.00011 2.3E-09 67.8 4.6 36 3-49 28-63 (242)
440 PRK01889 GTPase RsgA; Reviewed 97.5 0.00011 2.4E-09 71.8 4.8 23 3-25 196-218 (356)
441 PRK13637 cbiO cobalt transport 97.5 0.00011 2.3E-09 69.7 4.7 36 3-49 34-69 (287)
442 cd03297 ABC_ModC_molybdenum_tr 97.5 0.0001 2.2E-09 66.6 4.3 35 4-49 25-59 (214)
443 PRK10247 putative ABC transpor 97.5 0.00011 2.3E-09 67.1 4.5 36 3-49 34-69 (225)
444 cd03254 ABCC_Glucan_exporter_l 97.5 0.00011 2.3E-09 67.1 4.4 36 3-49 30-65 (229)
445 PRK13648 cbiO cobalt transport 97.5 0.00012 2.6E-09 68.7 4.8 36 3-49 36-71 (269)
446 PRK11701 phnK phosphonate C-P 97.5 0.00011 2.3E-09 68.5 4.4 36 3-49 33-68 (258)
447 cd03251 ABCC_MsbA MsbA is an e 97.5 0.00011 2.4E-09 67.2 4.5 36 3-49 29-64 (234)
448 PRK13649 cbiO cobalt transport 97.5 0.00012 2.6E-09 69.1 4.7 36 3-49 34-69 (280)
449 PRK11300 livG leucine/isoleuci 97.5 0.00011 2.4E-09 68.2 4.4 37 3-50 32-68 (255)
450 TIGR03411 urea_trans_UrtD urea 97.5 0.00011 2.4E-09 67.6 4.4 36 3-49 29-64 (242)
451 cd03247 ABCC_cytochrome_bd The 97.5 0.00012 2.6E-09 64.2 4.4 36 3-49 29-64 (178)
452 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.5 0.00013 2.8E-09 66.6 4.8 36 3-49 49-84 (224)
453 KOG3886|consensus 97.5 5E-05 1.1E-09 68.4 1.9 90 1-108 3-93 (295)
454 cd03237 ABC_RNaseL_inhibitor_d 97.5 0.00011 2.4E-09 68.0 4.4 35 3-48 26-60 (246)
455 PRK15112 antimicrobial peptide 97.5 0.00011 2.5E-09 68.8 4.4 36 3-49 40-75 (267)
456 TIGR03740 galliderm_ABC gallid 97.5 0.00013 2.9E-09 66.2 4.8 36 3-49 27-62 (223)
457 PRK13646 cbiO cobalt transport 97.5 0.00012 2.6E-09 69.4 4.6 36 3-49 34-69 (286)
458 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.5 0.00012 2.6E-09 67.2 4.5 36 3-49 30-65 (238)
459 PRK10575 iron-hydroxamate tran 97.5 0.00011 2.4E-09 68.8 4.3 36 3-49 38-73 (265)
460 PRK11614 livF leucine/isoleuci 97.5 0.00012 2.5E-09 67.3 4.3 36 3-49 32-67 (237)
461 TIGR03005 ectoine_ehuA ectoine 97.5 0.00013 2.9E-09 67.6 4.7 36 3-49 27-62 (252)
462 cd03246 ABCC_Protease_Secretio 97.5 0.00013 2.9E-09 63.7 4.5 35 3-48 29-63 (173)
463 cd03253 ABCC_ATM1_transporter 97.5 0.00012 2.7E-09 67.0 4.5 36 3-49 28-63 (236)
464 cd03294 ABC_Pro_Gly_Bertaine T 97.5 0.00013 2.8E-09 68.4 4.7 36 3-49 51-86 (269)
465 TIGR02769 nickel_nikE nickel i 97.5 0.00013 2.7E-09 68.4 4.6 36 3-49 38-73 (265)
466 TIGR01277 thiQ thiamine ABC tr 97.5 0.00013 2.9E-09 65.8 4.6 37 2-49 24-60 (213)
467 PRK11247 ssuB aliphatic sulfon 97.5 0.00014 3E-09 67.9 4.8 35 3-48 39-73 (257)
468 TIGR03771 anch_rpt_ABC anchore 97.5 0.00013 2.8E-09 66.5 4.5 37 2-49 6-42 (223)
469 TIGR02323 CP_lyasePhnK phospho 97.5 0.00012 2.6E-09 67.9 4.3 35 3-48 30-64 (253)
470 PRK09544 znuC high-affinity zi 97.5 0.00015 3.2E-09 67.5 4.8 35 3-48 31-65 (251)
471 PRK13643 cbiO cobalt transport 97.4 0.00013 2.9E-09 69.1 4.6 36 3-49 33-68 (288)
472 cd03233 ABC_PDR_domain1 The pl 97.4 0.00015 3.2E-09 65.1 4.5 36 3-49 34-72 (202)
473 cd03217 ABC_FeS_Assembly ABC-t 97.4 0.00016 3.5E-09 64.7 4.7 38 3-49 27-64 (200)
474 cd03223 ABCD_peroxisomal_ALDP 97.4 0.00015 3.3E-09 62.9 4.5 35 3-48 28-62 (166)
475 PRK10771 thiQ thiamine transpo 97.4 0.00014 3E-09 66.6 4.4 37 3-50 26-62 (232)
476 COG4525 TauB ABC-type taurine 97.4 0.00013 2.8E-09 64.5 3.9 36 4-50 33-68 (259)
477 PRK13647 cbiO cobalt transport 97.4 0.00015 3.3E-09 68.2 4.7 36 3-49 32-67 (274)
478 TIGR02314 ABC_MetN D-methionin 97.4 0.00013 2.8E-09 70.9 4.4 36 3-49 32-67 (343)
479 PRK13548 hmuV hemin importer A 97.4 0.00014 3.1E-09 67.8 4.5 36 3-49 29-64 (258)
480 PRK11153 metN DL-methionine tr 97.4 0.00015 3.2E-09 70.6 4.8 36 3-49 32-67 (343)
481 PRK13635 cbiO cobalt transport 97.4 0.00015 3.2E-09 68.5 4.6 36 3-49 34-69 (279)
482 PRK11831 putative ABC transpor 97.4 0.00015 3.2E-09 68.1 4.6 36 3-49 34-69 (269)
483 PRK13644 cbiO cobalt transport 97.4 0.00015 3.2E-09 68.3 4.6 36 3-49 29-64 (274)
484 cd03228 ABCC_MRP_Like The MRP 97.4 0.00016 3.4E-09 63.1 4.5 36 3-49 29-64 (171)
485 cd03369 ABCC_NFT1 Domain 2 of 97.4 0.00015 3.3E-09 65.1 4.4 36 3-49 35-70 (207)
486 TIGR03522 GldA_ABC_ATP gliding 97.4 0.00014 3E-09 69.5 4.4 35 4-49 30-64 (301)
487 TIGR01978 sufC FeS assembly AT 97.4 0.00015 3.4E-09 66.6 4.6 38 3-49 27-64 (243)
488 PRK13645 cbiO cobalt transport 97.4 0.00014 3.1E-09 68.9 4.5 36 3-49 38-73 (289)
489 PRK13650 cbiO cobalt transport 97.4 0.00015 3.3E-09 68.4 4.6 36 3-49 34-69 (279)
490 cd03248 ABCC_TAP TAP, the Tran 97.4 0.00016 3.5E-09 65.8 4.6 37 3-50 41-77 (226)
491 cd03250 ABCC_MRP_domain1 Domai 97.4 0.00016 3.4E-09 64.8 4.4 35 3-48 32-66 (204)
492 PRK11231 fecE iron-dicitrate t 97.4 0.00016 3.5E-09 67.2 4.5 36 3-49 29-64 (255)
493 TIGR03873 F420-0_ABC_ATP propo 97.4 0.00015 3.2E-09 67.4 4.3 36 3-49 28-63 (256)
494 TIGR02982 heterocyst_DevA ABC 97.4 0.00019 4.1E-09 65.2 4.8 36 3-49 32-67 (220)
495 cd03252 ABCC_Hemolysin The ABC 97.4 0.00016 3.5E-09 66.3 4.4 36 3-49 29-64 (237)
496 PRK13546 teichoic acids export 97.4 0.00017 3.8E-09 67.5 4.7 35 3-48 51-85 (264)
497 COG5192 BMS1 GTP-binding prote 97.4 0.00013 2.9E-09 73.0 4.0 76 3-109 70-146 (1077)
498 PRK13632 cbiO cobalt transport 97.4 0.00017 3.7E-09 67.8 4.6 36 3-49 36-71 (271)
499 PRK10253 iron-enterobactin tra 97.4 0.00016 3.5E-09 67.6 4.4 36 3-49 34-69 (265)
500 cd03245 ABCC_bacteriocin_expor 97.4 0.00017 3.7E-09 65.4 4.4 36 3-49 31-66 (220)
No 1
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=100.00 E-value=1.7e-95 Score=698.64 Aligned_cols=363 Identities=54% Similarity=0.921 Sum_probs=347.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 1 MNLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 1 m~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
|+++|||||.||||||||||+||+..+.+++|||||++|+.|.+.+++.+++.|.++++|++.+|.++.++|+||+.+++
T Consensus 1 m~~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 1 MGLKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHH
Q psy2401 81 SKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIE 160 (363)
Q Consensus 81 ~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~ 160 (363)
+.+++++++|++++++||+++||||+|.+++++|++|..||++|++.+++||.++|++.+++|++++.|..+.+++....
T Consensus 81 ~~g~glg~~fL~~i~~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL~~~d~~~~ek~~~k~~k~~~~~~~~~~~ 160 (364)
T PRK09601 81 SKGEGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILADLETVEKRLERLEKKAKGGDKEAKA 160 (364)
T ss_pred ChHHHHHHHHHHHHHhCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887666555567
Q ss_pred HHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCC-CchHHHHHHHHHHhcCCCcEEEeeHH
Q psy2401 161 LLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGF-KNNLLLDQLKIYAHNQNIPIIIICAK 239 (363)
Q Consensus 161 ~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~-~~~~~~~~i~~~~~~~~~~~i~~sa~ 239 (363)
+.+++++|+++|+++.+.+...|+++|...++++.++|.||++|++|++|.++ ..+++.+++++++.+++.+++++||+
T Consensus 161 e~~~l~~v~~~Le~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~ 240 (364)
T PRK09601 161 ELELLEKLLEHLEEGKPARTLELTDEEEKLLKSLQLLTAKPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAK 240 (364)
T ss_pred HHHHHHHHHHHHHcCCCcccCCCCHHHHHHHHHhcccccCCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHH
Confidence 88999999999999988888899999999999999999999999999999754 35778999999988888899999999
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeCCCCceEEEeecCCCCHHHhhhhhhcchhcccEEE
Q psy2401 240 LEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTVGKKEIRAWTIPNGTTAEQAAGIIHTDIKRGFIRA 319 (363)
Q Consensus 240 ~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~g~~e~raw~~~~g~ta~~~A~~IHsD~~~gfi~A 319 (363)
+|.++.+|+++++++||+++|+++++++++++++|++||||+|||+|++|+|||++++||||+||||+|||||+||||||
T Consensus 241 ~E~el~~l~~ee~~~fl~~~g~~~s~~~~ii~~~~~~L~li~fftvg~~evrawti~~GstA~~aAg~IHsD~~kgFI~A 320 (364)
T PRK09601 241 IEAEIAELDDEEKAEFLEELGLEESGLDRLIRAGYELLGLITYFTAGPKEVRAWTIKKGTTAPQAAGVIHTDFEKGFIRA 320 (364)
T ss_pred HHHHHHcCCHHHHHHHHHHcCCcchhHHHHHHHHHHHhCCEEEecCCCCeEEEEEeCCCCchHHHhhcchhhHhhccEEE
Confidence 99999999998999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccccChhhHhhcCceeecCCCeeeeCCCEEEEEecC
Q psy2401 320 LTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDGDILNFLFNI 363 (363)
Q Consensus 320 ~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdii~~~f~~ 363 (363)
||++|+||+++||+++||++|++|+|||||+|||||||+|||||
T Consensus 321 eVi~~~d~~~~g~~~~ak~~gk~rleGkdY~v~DGDIi~f~fn~ 364 (364)
T PRK09601 321 EVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQDGDVMHFRFNV 364 (364)
T ss_pred EEecHHHHHHcCCHHHHHHccceeccCCceEecCCCEEEEEcCC
Confidence 99999999999999999999999999999999999999999997
No 2
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=100.00 E-value=4.1e-92 Score=675.23 Aligned_cols=361 Identities=48% Similarity=0.718 Sum_probs=339.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHcCCc-cccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCC
Q psy2401 1 MNLKCGLIGLPNVGKSTLFNALTKLKI-SAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSG 79 (363)
Q Consensus 1 m~~~i~lvG~~g~GKSTL~n~Lt~~~~-~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
|++++||||.||+|||||||+||++.+ .+++|||||++|+.|.+.++|.|++.|+.+++|++..|..+.++|+||+..+
T Consensus 1 m~lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g 80 (368)
T TIGR00092 1 MGLSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG 80 (368)
T ss_pred CCceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence 889999999999999999999999988 9999999999999999999999999999999999999999999999999999
Q ss_pred CCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhH
Q psy2401 80 ASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSI 159 (363)
Q Consensus 80 ~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~ 159 (363)
++++++++++|++++|++|+++||||+|++++++|+.|.+||.+|++.+++||.++|++.+++|++++.|..+.+ +...
T Consensus 81 As~g~Glgn~fL~~ir~~d~l~hVvr~f~d~~i~H~~~~~dp~~d~~~i~~EL~l~d~~~~ek~l~r~~k~~k~~-k~~~ 159 (368)
T TIGR00092 81 ASKGEGLGNQFLANIREVDIIQHVVRCFEDDIIHHVGNVDDPRDDFEIIDEELLKADEFLVEKRIGRSKKSAEGG-KDKK 159 (368)
T ss_pred hhcccCcchHHHHHHHhCCEEEEEEeCCCCcccCccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc-hhhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999875543 4445
Q ss_pred HHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCC-Cc-hHHHHHHHHHHhc---CCCcEE
Q psy2401 160 ELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGF-KN-NLLLDQLKIYAHN---QNIPII 234 (363)
Q Consensus 160 ~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~-~~-~~~~~~i~~~~~~---~~~~~i 234 (363)
.+..++++++++|+++++.+.+.+++++...++.+.++|.||++|++|..+.++ .. +.+...++ |+.+ .+..++
T Consensus 160 ~e~~ll~~~~~~Le~~~~~r~~~~~~ee~~~~~~~~llt~Kp~~~v~N~~e~~~~~~n~~~~~~~~-~~~~~~~~~~~~~ 238 (368)
T TIGR00092 160 EELLLLEIILPLLNGGQMARHVDLSKEELILIKSLNLLTKKPIILIANVSEDYLRNLNNNYLLIVE-WIAAYSKGDPKVV 238 (368)
T ss_pred HHHHHHHHHHHHHhCCCeeccCCCCHHHHHHHHhCcchhhCCEEEEEECCHHHhhhcccHHHHHHH-HHhhcCcCCCeEE
Confidence 678899999999999999998889999999999999999999999999887543 12 34444555 7776 466789
Q ss_pred EeeHHHHHHHhcCCHHHHHHHHhhcCCCch-hHHHHHHHHHHhCCCEEEEeCCCCceEEEeecCCCCHHHhhhhhhcchh
Q psy2401 235 IICAKLEEEISDLNNIDKKFFLDNLGLKET-KLNDLIRASFSLLDLRTYFTVGKKEIRAWTIPNGTTAEQAAGIIHTDIK 313 (363)
Q Consensus 235 ~~sa~~e~~i~el~~~~~~~~l~~~~l~~~-~l~~l~~~~~~~l~li~~ft~g~~e~raw~~~~g~ta~~~A~~IHsD~~ 313 (363)
++||++|.++++++++++.+||+++|++++ +++++++..|++|+|++|||+|++|+||||+++|+||+||||+|||||+
T Consensus 239 ~~~a~~E~el~~l~~ee~~~fl~~~g~~~s~~~~~ii~~~y~lL~L~sFfT~g~~EvRaWti~~G~~Ap~AAG~IHsDfe 318 (368)
T TIGR00092 239 FVCALEESELSELDDEERQEFLQKLGLTESAGLNIIIRARYKLLLLSFFFTGGKEEVRAWTRKGGWAAPQAAGIIHTDFE 318 (368)
T ss_pred EeEHHHHHHHhcCCHHHHHHHHHHcCCcccchHHHHHHHHHHHhCeeEEEcCCCceeEEeecCCCCchhHhcCCcccccc
Confidence 999999999999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEEecccccccccChhhHhhcCceeecCCCeeeeCCCEEEEEecC
Q psy2401 314 RGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDGDILNFLFNI 363 (363)
Q Consensus 314 ~gfi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdii~~~f~~ 363 (363)
||||||||++|+||+++||++.||++|++|+|||+|+|||||||+|||||
T Consensus 319 kgFIrAEV~~yddl~~~gs~~~~k~~Gk~r~eGK~YivqDGDIi~f~fnv 368 (368)
T TIGR00092 319 TGFIAAEVISWDDFIYKKSSQGAKKGGLMRLEGKYYVVDDGDVLFFAFNV 368 (368)
T ss_pred cCceEEEEecHHHHHHcCCHHHHHhcCchhhcCCeEEeeCCeEEEEecCC
Confidence 99999999999999999999999999999999999999999999999997
No 3
>PTZ00258 GTP-binding protein; Provisional
Probab=100.00 E-value=9.7e-92 Score=679.86 Aligned_cols=362 Identities=45% Similarity=0.785 Sum_probs=341.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
+++|||||.||||||||||+||+..+.+++|||||++|+.|.+.+++.+++.|+.+++|++.++.++.++||||+..+.+
T Consensus 21 ~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~ 100 (390)
T PTZ00258 21 NLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGAS 100 (390)
T ss_pred CcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhccccc--CCchhH
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFL--KNEHSI 159 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~--g~~~~~ 159 (363)
.+++++++|+++++++|+++||||+|++++++|++|..||++|++.+++||.++|++.++++++++.+..+. .++...
T Consensus 101 ~g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~~~~k~~~~~~~~~~~~ 180 (390)
T PTZ00258 101 EGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDELTKKRKKKKKKKEEK 180 (390)
T ss_pred chhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccccchhhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999876422 334445
Q ss_pred HHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCC--CchHHHHHHHHHHhcC-CCcEEEe
Q psy2401 160 ELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGF--KNNLLLDQLKIYAHNQ-NIPIIII 236 (363)
Q Consensus 160 ~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~--~~~~~~~~i~~~~~~~-~~~~i~~ 236 (363)
.+.+++++|+++|+++.+.+...|+++|...++.+.++|.||++|++|+++.++ .++++.+++++++.++ +.+++++
T Consensus 181 ~~~~~l~~v~~~L~~~~~~~~~~~~~~e~~~l~~l~llt~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~ 260 (390)
T PTZ00258 181 VELDVLKKVLEWLEEGKPVRDGDWTDKEIEILNEYQLLTAKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPY 260 (390)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhchhhcCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEe
Confidence 578899999999999999999999999999999999999999999999994332 3567889999988877 4789999
Q ss_pred eHHHHHHHhcC-CHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeCCCCceEEEeecCCCCHHHhhhhhhcchhcc
Q psy2401 237 CAKLEEEISDL-NNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTVGKKEIRAWTIPNGTTAEQAAGIIHTDIKRG 315 (363)
Q Consensus 237 sa~~e~~i~el-~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~g~~e~raw~~~~g~ta~~~A~~IHsD~~~g 315 (363)
||++|.+++++ +++++.+||+++|++++|++++++++|++|+||+|||+||||+|||++++||||+||||+|||||+||
T Consensus 261 sa~~E~el~~l~~~~e~~~fl~~~g~~~~gl~~li~~~~~lL~li~ffT~g~~e~raw~i~~Gsta~~aAg~IHsD~~kg 340 (390)
T PTZ00258 261 SAEFEEELAELGSEEERKEYLEEYGIKQSMLDKIIKTGYKLLNLIHFFTAGPDEVRCWTIQKGTKAPQAAGVIHSDFEKG 340 (390)
T ss_pred eHHHHHHHHhcCCHHHHHHHHHHcCCCcccHHHHHHHHHHHhCCEEEEcCCCCceeEEEeCCCCcHHHHHhhhhhHHhhC
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecccccccccChhhHhhcCceeecCCCeeeeCCCEEEEEecC
Q psy2401 316 FIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDGDILNFLFNI 363 (363)
Q Consensus 316 fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdii~~~f~~ 363 (363)
||||+||+|+||+++||++.||.+|++|++||||+|||||||+|||||
T Consensus 341 Fi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGDIi~f~fnv 388 (390)
T PTZ00258 341 FICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGDIIFFKFNV 388 (390)
T ss_pred cEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCCEEEEEecC
Confidence 999999999999999999999999999999999999999999999997
No 4
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.1e-92 Score=662.34 Aligned_cols=363 Identities=51% Similarity=0.834 Sum_probs=346.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccc-cccccceeEEEEeeecccCC
Q psy2401 1 MNLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVK-TKKIFPAIIKLVDIAGLVSG 79 (363)
Q Consensus 1 m~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~-~~~~~~~~i~lvDtpGl~~~ 79 (363)
|++++||||.||||||||||+||.+.+.++||||||++||.|.+++++.|+.+|.++++ |++.+|.+++++|++|++++
T Consensus 1 m~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 1 MSLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CCceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 88999999999999999999999999999999999999999999999999999999888 78899999999999999999
Q ss_pred CCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccC---Cc
Q psy2401 80 ASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLK---NE 156 (363)
Q Consensus 80 ~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g---~~ 156 (363)
+|+|+||||+||+++|++|+|+||||||+++++.|+.+.+||++|++.+++||.+||++.++++|+++.|.++.+ ++
T Consensus 81 As~GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL~l~d~~~lek~~~r~~k~a~~~~~~~k 160 (372)
T COG0012 81 ASKGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTELILWDLESLEKRWERLEKRAKAGKKLDK 160 (372)
T ss_pred cccCCCcchHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998876 57
Q ss_pred hhHHHHHHHHHHHhhhcCCCccccc---CCChHHHHHHhhhcccccccEEEeccccccCCC-chHHHHHHHHHHhcCCCc
Q psy2401 157 HSIELLKLLKRIIFNLNKSIPIRLM---SLNNEELMSIKFLNLLTIKPIIFVANVKENGFK-NNLLLDQLKIYAHNQNIP 232 (363)
Q Consensus 157 ~~~~~~~~l~~i~~~L~~~~~~~~~---~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~-~~~~~~~i~~~~~~~~~~ 232 (363)
....+.+++..+.+.|.++.+.+.+ .|++++...++.+.++|.||++|++||+|.+.. .+++.++++++...++..
T Consensus 161 ~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~l~llt~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~~~ 240 (372)
T COG0012 161 ELKEELSLLGKLEEHLEEGKPARGLDLSKWSEEDLEALASLNLLTAKPMLYVANVSEDDLANLNEYVKRLKELAAKENAE 240 (372)
T ss_pred HHHHHHHHHHhHHHHHHhhhhhhcCCcccCCHHHHHHHHHhhhhhcCCeEEEEECCcccccchhHHHHHHHHHhhhcCCc
Confidence 7777889999999999998887653 599999999999999999999999999998752 356799999999888889
Q ss_pred EEEeeHHHHHHHhcCCH-HHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeCCCCceEEEeecCCCCHHHhhhhhhcc
Q psy2401 233 IIIICAKLEEEISDLNN-IDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTVGKKEIRAWTIPNGTTAEQAAGIIHTD 311 (363)
Q Consensus 233 ~i~~sa~~e~~i~el~~-~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~g~~e~raw~~~~g~ta~~~A~~IHsD 311 (363)
++|+||+.|++|.++++ ++..+|+..+|+..++|++++++.|..|||++|||+|++|+|+||+++|+||+|+||.||||
T Consensus 241 vV~~sA~~E~eL~~l~~~~e~~~F~~~~g~~~~~l~~~i~~~y~~lgl~~~ft~g~~evrawti~~g~kap~aaG~Ih~D 320 (372)
T COG0012 241 VVPVSAAIELELRELADAEEKGEFLIELGQKESGLNELIRAGYGLLGLQTYFTAGVKEVRAWTIKDGSKAPDAAGVIHPD 320 (372)
T ss_pred EEEeeHHHHHHHHhCccccchhhHHHhcCcchhHHHHHHHHHhcccchhHHHhhcCCeEEEEEeccCCcccccCCccccc
Confidence 99999999999999987 88888999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccEEEEEecccccccccChhhHhhcCceeecCCCeeeeCCCEEEEEecC
Q psy2401 312 IKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDGDILNFLFNI 363 (363)
Q Consensus 312 ~~~gfi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdii~~~f~~ 363 (363)
|++|||+|+|++|+|++.+||++.||.+|++|++||||+|||||||+||||+
T Consensus 321 fe~~fi~aevi~~~d~i~~~~~~~Akeag~~r~~GkdY~vqdGDVi~Fk~~~ 372 (372)
T COG0012 321 FEKGFIRAEVISYADLIHYGGEAAAKEAGKRRLEGKDYIVQDGDVIHFKFNV 372 (372)
T ss_pred hhhccccceEeeHHHHHhcCcHHHHHHhcceeeccccceecCCCEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999996
No 5
>KOG1491|consensus
Probab=100.00 E-value=4.9e-86 Score=609.33 Aligned_cols=362 Identities=44% Similarity=0.715 Sum_probs=338.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 1 MNLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 1 m~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
|++++||||.||+||||+||+||++.+.++||||||++|+.+.+.+++.|++.|++.|+|++.+|+.+++.|++|+++++
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 45799999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred CcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCC-----
Q psy2401 81 SKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKN----- 155 (363)
Q Consensus 81 ~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~----- 155 (363)
|.|+|+||.||+++|.+|+|+||||||++.+++||++.+||++|+++++.||.++|++.++++++++.|..+.+.
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~lkd~e~l~k~~e~~~k~~~~~~~~~~~ 178 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELRLKDLEFLEKRLEKLEKKHKRTKSNLET 178 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHHHHhHHHHHHHHHHHHhhhhhcccCcHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998765432
Q ss_pred chhHHHHHHHHHHHhhhcCCCcc-cc-cCCChHHHHHHhhhcccccccEEEeccccccCCC--chHHHHHHHHHHhcC--
Q psy2401 156 EHSIELLKLLKRIIFNLNKSIPI-RL-MSLNNEELMSIKFLNLLTIKPIIFVANVKENGFK--NNLLLDQLKIYAHNQ-- 229 (363)
Q Consensus 156 ~~~~~~~~~l~~i~~~L~~~~~~-~~-~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~--~~~~~~~i~~~~~~~-- 229 (363)
+....+.++++.+.++|.+++.. +. ..|+++|.+.++.+.++|.||++|++|++|.++. .++.+.++++|...+
T Consensus 179 ~q~k~e~~~l~~v~~~ll~~kk~~~~~~~W~d~eieiln~~~lLt~kP~Vyl~N~se~dy~r~knk~l~~i~~w~~~~~~ 258 (391)
T KOG1491|consen 179 KQLKFEYGLLEKVKEKLLDGKKPVRPKEKWNDEEIEILNKLFLLTAKPTVYLLNLSEHDYARKKNKKLPKIKEWVDEVSP 258 (391)
T ss_pred HHHHHHHhHHHHHHHHHhccCCCCcchhhcCHHHHHHHHHhhhhhcCceEEEEecCcchhhhHHHHHHhhhhhhhhccCC
Confidence 33344577899999988765543 33 5799999999999999999999999999998763 456788899998755
Q ss_pred CCcEEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeCCCCceEEEeecCCCCHHHhhhhhh
Q psy2401 230 NIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTVGKKEIRAWTIPNGTTAEQAAGIIH 309 (363)
Q Consensus 230 ~~~~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~g~~e~raw~~~~g~ta~~~A~~IH 309 (363)
|..++++|+.+|+.+.++.+|++.+||++.+. .+.|.++|.+.|+.|+|+.|||+||+|+|+|+|++|++|++|||+||
T Consensus 259 g~~~i~fs~~~e~ql~~~~~EE~~~~~~~~~~-~s~L~~iI~~~~~~L~li~fFt~G~~eV~~WtIr~gt~ap~aagvih 337 (391)
T KOG1491|consen 259 GDVVIVFSAAFESQLFELYEEEAVKELEDLGD-SSALPKIIKTGYSALNLIVFFTCGEDEVRAWTIRKGTKAPQAAGVIH 337 (391)
T ss_pred CCeEEEehHHHHHHhhccCHHHHHHHHHhccc-ccchhHHHHHHHHhhCceEEEeeCCchheeeehhhccccccccceee
Confidence 57799999999999999999999999999995 59999999999999999999999999999999999999999999999
Q ss_pred cchhcccEEEEEecccccccccChhhHhhcCceeecCCCeeeeCCCEEEEEecC
Q psy2401 310 TDIKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDGDILNFLFNI 363 (363)
Q Consensus 310 sD~~~gfi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdii~~~f~~ 363 (363)
|||++|||.|+|++|+||..+||+.+||.+|+.|.+||+|+|+||||++||||.
T Consensus 338 sdf~k~Fi~aev~~f~D~~~~k~e~a~k~~Gk~~~~Gk~yiVedGDIi~FK~~~ 391 (391)
T KOG1491|consen 338 SDFEKGFIMAEVMKFEDFKEYKSESACKAAGKYRQVGKEYIVEDGDIIFFKFNP 391 (391)
T ss_pred ehhhhhccccceeeeehHHHhcCHHHHHHhcchhhcCceeeecCCCEEEEeecC
Confidence 999999999999999999999999999999999999999999999999999985
No 6
>PRK09602 translation-associated GTPase; Reviewed
Probab=100.00 E-value=4.9e-63 Score=484.37 Aligned_cols=333 Identities=31% Similarity=0.457 Sum_probs=278.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCC----cccccccccccccc------ccceeEEEEe
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPD----KRLKHLNNIVKTKK------IFPAIIKLVD 72 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~----~~~~~l~~~~~~~~------~~~~~i~lvD 72 (363)
++|||||.||||||||||+||+..+.+++|||+|++|+.|.+.+++ .+++. +++|.+ ..+.+++++|
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~---~~~~~~~~~~~~~~~~~i~i~D 78 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGV---KCNPRNGKCIDGTRFIPVELID 78 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhh---hhccccccccCCcceeeEEEEE
Confidence 7999999999999999999999988999999999999999988744 34433 455444 6778999999
Q ss_pred eecccCCCCcccchhhHHHhhccccCEEEEEEecccCC---ceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhc
Q psy2401 73 IAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDD---KITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENK 149 (363)
Q Consensus 73 tpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~---~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k 149 (363)
|||+.++++.+++++++|++++++||+++||||+|.+. ..++.+|..||++|++.++.||.++|++.+++++.++.+
T Consensus 79 ~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~ 158 (396)
T PRK09602 79 VAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSR 158 (396)
T ss_pred cCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999543 234448999999999999999999999999999988887
Q ss_pred ccccCCchh----HHHHHHH----HHHHhhhcC-CCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHH
Q psy2401 150 KFFLKNEHS----IELLKLL----KRIIFNLNK-SIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLD 220 (363)
Q Consensus 150 ~~~~g~~~~----~~~~~~l----~~i~~~L~~-~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~ 220 (363)
..+.++... ......+ +.|+++|++ +.+.+...|++++...+..+.+++.||++||+||.|.. ..++..+
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~-~~~~~l~ 237 (396)
T PRK09602 159 KAQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLP-PAEENIE 237 (396)
T ss_pred HHhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcc-cchHHHH
Confidence 655543221 1223333 789999985 56666678999999899999999999999999999963 2344455
Q ss_pred HHHHHHhcCCCcEEEeeHHHHHHHhc---------------------CCHHHH------HHHHhhcCCCchhHHHHH-HH
Q psy2401 221 QLKIYAHNQNIPIIIICAKLEEEISD---------------------LNNIDK------KFFLDNLGLKETKLNDLI-RA 272 (363)
Q Consensus 221 ~i~~~~~~~~~~~i~~sa~~e~~i~e---------------------l~~~~~------~~~l~~~~l~~~~l~~l~-~~ 272 (363)
.+.++ .+..++++||+.|.++.+ ++++.. ++||+.+++ +|+++++ ++
T Consensus 238 ~i~~~---~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r~~E~IRk~l~~~g~--~~~~~~i~~~ 312 (396)
T PRK09602 238 RLKEE---KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKKALEYIREVLKKYGG--TGVQEAINTA 312 (396)
T ss_pred HHHhc---CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHHHHHHHHHHHHHhCC--chHHHHHHHH
Confidence 55554 345699999999999876 555442 489999997 8999999 79
Q ss_pred HHHhCCCEEEEeCCC----------CceEEEeecCCCCHHHhhhhhhcchhcccEEEEEecccccccccChhhHhhcCce
Q psy2401 273 SFSLLDLRTYFTVGK----------KEIRAWTIPNGTTAEQAAGIIHTDIKRGFIRALTISYKDFLLYKGEQGCKNAGKI 342 (363)
Q Consensus 273 ~~~~l~li~~ft~g~----------~e~raw~~~~g~ta~~~A~~IHsD~~~gfi~A~v~~~~d~~~~~~~~~~k~~g~~ 342 (363)
+|++|+||+|||+++ ++.|||++++|+||+|+|++|||||+++||||+ .|| +.
T Consensus 313 ~~~~L~li~~yt~~~~~~~~~~~g~~~~~~~~l~~g~t~~d~A~~IH~d~~~~fi~A~--------------~~~---~~ 375 (396)
T PRK09602 313 VFDLLDMIVVYPVEDENKLTDKKGNVLPDAFLLPKGSTARDLAYKIHTDIGEGFLYAI--------------DAR---TK 375 (396)
T ss_pred HHHHhCCEEEEecCcccccccccCcccceeEEECCCCCHHHHHHHHHHHHHhhceehh--------------ccc---CC
Confidence 999999999999965 677799999999999999999999999999999 344 34
Q ss_pred eecCCCeeeeCCCEEEEEe
Q psy2401 343 RSEGKKYLVEDGDILNFLF 361 (363)
Q Consensus 343 r~~gk~y~v~dgdii~~~f 361 (363)
|.+|++|+|+|||||+|.-
T Consensus 376 ~~~g~~~~l~dgDiv~i~~ 394 (396)
T PRK09602 376 RRIGEDYELKDGDVIKIVS 394 (396)
T ss_pred cccCCCcEecCCCEEEEEe
Confidence 5779999999999999864
No 7
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=100.00 E-value=5e-54 Score=400.48 Aligned_cols=273 Identities=51% Similarity=0.832 Sum_probs=254.9
Q ss_pred EEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCccc
Q psy2401 5 CGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKGE 84 (363)
Q Consensus 5 i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~ 84 (363)
|||||.||||||||||+||+..+.+++|||||++|+.|.+.+++.+++.++.+++|.+.+|++++++|+||+.++++.++
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 68999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHHHH
Q psy2401 85 GLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELLKL 164 (363)
Q Consensus 85 ~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~~~ 164 (363)
+++++|+++++++|+++||||+|++++++|++|.+||++|++.++.||.+||++.+++++++++|..+.+++....+.++
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~d~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~ek~~~~l~k~~~~~~~~~~~e~~~ 160 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILADLETVEKRLERLEKKAKSGDKEAKAELEL 160 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcCCCCccCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998876665556678899
Q ss_pred HHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCC-CchHHHHHHHHHHhcCCCcEEEeeHHHHHH
Q psy2401 165 LKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGF-KNNLLLDQLKIYAHNQNIPIIIICAKLEEE 243 (363)
Q Consensus 165 l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~-~~~~~~~~i~~~~~~~~~~~i~~sa~~e~~ 243 (363)
+++|+++|+++.+++...|+.+|...++++.++|.||++|++|++|.++ ..+...+++..+....+.+++++||++|.+
T Consensus 161 l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~d~~~~~~~~~~~~~~~~~~~~~~i~~sa~~E~e 240 (274)
T cd01900 161 LEKIKEHLEEGKPARSLELTEEEIEILNSLQLLTAKPVLYVANVSEDDLANGNNKVLKVREIAAKEGAEVIPISAKIEAE 240 (274)
T ss_pred HHHHHHHHHcCCCcCcCCCCHHHHHHHHHHhHhhcCCceeecccCHHHhccccHHHHHHHHHHhcCCCeEEEeeHHHHHH
Confidence 9999999999999888899999999999999999999999999999553 234556677777777788899999999999
Q ss_pred HhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhC
Q psy2401 244 ISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLL 277 (363)
Q Consensus 244 i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l 277 (363)
+++|+++++++||+++|+++++++++++++|++|
T Consensus 241 L~~l~~ee~~~fl~~~gi~es~l~riI~~~y~~L 274 (274)
T cd01900 241 LAELDEEEAAEFLEELGLEESGLDRLIRAGYELL 274 (274)
T ss_pred HHcCCHHHHHHHHHHcCCccccHHHHHHHHHhhC
Confidence 9999999999999999999999999999999986
No 8
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=100.00 E-value=1.4e-47 Score=352.99 Aligned_cols=286 Identities=27% Similarity=0.353 Sum_probs=235.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
-++++||+|++|||||+|+||+...++++|||||..|.+|++.++| ++|+++|+||++.+++.
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g-----------------a~IQild~Pgii~gas~ 126 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG-----------------AQIQLLDLPGIIEGASS 126 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC-----------------ceEEEEcCcccccCccc
Confidence 4799999999999999999999999999999999999999999999 89999999999999999
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhh-hhhhcccccCCc-hhHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYI-DKENKKFFLKNE-HSIE 160 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~-~~i~k~~~~g~~-~~~~ 160 (363)
+.+.|+++++.+|+||++++|+|++.+ ...++.+..||.-.++...+.+. ..+.|...+|-+ ....
T Consensus 127 g~grG~~vlsv~R~ADlIiiVld~~~~------------~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~ 194 (365)
T COG1163 127 GRGRGRQVLSVARNADLIIIVLDVFED------------PHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTG 194 (365)
T ss_pred CCCCcceeeeeeccCCEEEEEEecCCC------------hhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEeccc
Confidence 999999999999999999999999743 22367888888888876666643 556665444421 1111
Q ss_pred HH--HHHHHHHhhhcCCCccccc-----CCChHHHHHHhhh-cccccccEEEeccccccCCCchHHHHHHHHHHhcCCCc
Q psy2401 161 LL--KLLKRIIFNLNKSIPIRLM-----SLNNEELMSIKFL-NLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIP 232 (363)
Q Consensus 161 ~~--~~l~~i~~~L~~~~~~~~~-----~~~~~e~~~~~~~-~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~ 232 (363)
.. -..+.+++.|.++++.++. +.+-++ .++.+ ....++|++|++||.|.. ..+..+.+.+. ..
T Consensus 195 ~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd--~id~l~~nrvY~p~l~v~NKiD~~--~~e~~~~l~~~-----~~ 265 (365)
T COG1163 195 PLTHLDEDTVRAILREYRIHNADVLIREDVTLDD--LIDALEGNRVYKPALYVVNKIDLP--GLEELERLARK-----PN 265 (365)
T ss_pred ccccCCHHHHHHHHHHhCcccceEEEecCCcHHH--HHHHHhhcceeeeeEEEEeccccc--CHHHHHHHHhc-----cc
Confidence 11 2367888889888876542 667666 34444 567899999999999964 34455555443 26
Q ss_pred EEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeCCC----CceEEEeecCCCCHHHhhhhh
Q psy2401 233 IIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTVGK----KEIRAWTIPNGTTAEQAAGII 308 (363)
Q Consensus 233 ~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~g~----~e~raw~~~~g~ta~~~A~~I 308 (363)
.+++||+ ..-+++++.+.+|+.|+||+|||+.+ |...|.++++|||+.|+|.+|
T Consensus 266 ~v~isa~----------------------~~~nld~L~e~i~~~L~liRVYtK~~g~~pd~~~PlIlr~GsTV~Dvc~~I 323 (365)
T COG1163 266 SVPISAK----------------------KGINLDELKERIWDVLGLIRVYTKPPGEEPDFDEPLILRRGSTVGDVCRKI 323 (365)
T ss_pred eEEEecc----------------------cCCCHHHHHHHHHHhhCeEEEEecCCCCCCCCCCCeEEeCCCcHHHHHHHH
Confidence 8899998 35679999999999999999999954 556899999999999999999
Q ss_pred hcchhcccEEEEEecccccccccChhhHhhcCceeecCCCeeeeCCCEEEEE
Q psy2401 309 HTDIKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDGDILNFL 360 (363)
Q Consensus 309 HsD~~~gfi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdii~~~ 360 (363)
|+||.+.|.+|.||+- ++|+.| +|+ |.||++.|+|||+|-
T Consensus 324 H~~l~~~FryA~VWGk----------Svk~~~-QrV-G~dHvLeD~DIV~I~ 363 (365)
T COG1163 324 HRDLVENFRYARVWGK----------SVKHPG-QRV-GLDHVLEDEDIVEIH 363 (365)
T ss_pred HHHHHHhcceEEEecc----------CCCCCc-ccc-CcCcCccCCCeEEEe
Confidence 9999999999999985 788876 667 999999999999985
No 9
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=100.00 E-value=7.6e-44 Score=267.21 Aligned_cols=84 Identities=62% Similarity=1.045 Sum_probs=76.5
Q ss_pred CEEEEeCCCCceEEEeecCCCCHHHhhhhhhcchhcccEEEEEecccccccccChhhHhhcCceeecCCCeeeeCCCEEE
Q psy2401 279 LRTYFTVGKKEIRAWTIPNGTTAEQAAGIIHTDIKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDGDILN 358 (363)
Q Consensus 279 li~~ft~g~~e~raw~~~~g~ta~~~A~~IHsD~~~gfi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdii~ 358 (363)
|++|||+||+|+|||++++|+||+||||+|||||+||||+|||++|+||+++||++.||++|++|+|||||+|||||||+
T Consensus 1 L~tffT~G~~EvRaWti~~G~~Ap~aAG~IHsDfekgFI~Aevi~~~d~~~~~s~~~~k~~Gk~r~eGK~YivqDGDIi~ 80 (84)
T PF06071_consen 1 LITFFTAGPKEVRAWTIRKGTTAPQAAGVIHSDFEKGFIRAEVISYDDFVEYGSEAAAKEAGKLRLEGKDYIVQDGDIIH 80 (84)
T ss_dssp EEEEEEESSSEEEEEEEETT-BHHHHHHCC-THHHHHEEEEEEEEHHHHHHHTSHHHHHHTT-SEEEETT-B--TTEEEE
T ss_pred CceEEccCCCeEEEEEccCCCCHHHhHhHHHHHHHhhceEEEEEcHHHHHHcCCHHHHHHcCCccccCCceeEeCCCEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEec
Q psy2401 359 FLFN 362 (363)
Q Consensus 359 ~~f~ 362 (363)
||||
T Consensus 81 f~fN 84 (84)
T PF06071_consen 81 FRFN 84 (84)
T ss_dssp EEE-
T ss_pred EEcC
Confidence 9999
No 10
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=100.00 E-value=5.2e-43 Score=260.85 Aligned_cols=83 Identities=54% Similarity=0.934 Sum_probs=82.2
Q ss_pred CEEEEeCCCCceEEEeecCCCCHHHhhhhhhcchhcccEEEEEecccccccccChhhHhhcCceeecCCCeeeeCCCEEE
Q psy2401 279 LRTYFTVGKKEIRAWTIPNGTTAEQAAGIIHTDIKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDGDILN 358 (363)
Q Consensus 279 li~~ft~g~~e~raw~~~~g~ta~~~A~~IHsD~~~gfi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdii~ 358 (363)
|++|||+||+|+|||++++|+||+||||+|||||+||||||||++|+||+++||++.||++|++|+|||+|+||||||++
T Consensus 1 L~tffT~G~~EvRAWti~~g~tAp~AAG~IHsDfekgFIrAeVi~~~d~i~~g~~~~ak~~Gkir~eGK~Yiv~DGDi~~ 80 (83)
T cd04867 1 LISFFTAGPDEVRAWTIRKGTKAPQAAGVIHTDFEKGFIRAEVMKYEDLVELGSEAAAKEAGKYRQEGKDYVVQDGDIIF 80 (83)
T ss_pred CccEECCCCCeEEEEEccCCCChHHhcCCcccccccCcEEEEEEcHHHHHHcCCHHHHHHcChhhhhCCceEeeCCeEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEe
Q psy2401 359 FLF 361 (363)
Q Consensus 359 ~~f 361 (363)
|||
T Consensus 81 f~f 83 (83)
T cd04867 81 FKF 83 (83)
T ss_pred EEC
Confidence 998
No 11
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=100.00 E-value=5.8e-37 Score=292.28 Aligned_cols=246 Identities=29% Similarity=0.404 Sum_probs=196.1
Q ss_pred EEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeC----Cccccccccccccc------cccceeEEEEeee
Q psy2401 5 CGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVP----DKRLKHLNNIVKTK------KIFPAIIKLVDIA 74 (363)
Q Consensus 5 i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~----~~~~~~l~~~~~~~------~~~~~~i~lvDtp 74 (363)
|||+|.||||||||||+||+..+.+++|||||++|+.|.+.+. +.|++.++ .|+ +....++++||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~---~~~~~~~~~~~~~v~i~l~D~a 77 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSC---NPRYGKCIDGKRYVPVELIDVA 77 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhh---cccccccccCcCcceEEEEECC
Confidence 6899999999999999999999999999999999999998874 44555544 332 2334569999999
Q ss_pred cccCCCCcccchhhHHHhhccccCEEEEEEecccCCce---eeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhccc
Q psy2401 75 GLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKI---THISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKF 151 (363)
Q Consensus 75 Gl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~---~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~ 151 (363)
|+.++++.+++++++|++++|+||+++||+|++++.+. +|+.|..||.+|++.+++||.+||++.+++++.++.|..
T Consensus 78 Glv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~ 157 (318)
T cd01899 78 GLVPGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKA 157 (318)
T ss_pred CCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976554 899999999999999999999999999999999999876
Q ss_pred ccCCch----hHHHHHHH----HHHHhhhcCCC-cccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHH
Q psy2401 152 FLKNEH----SIELLKLL----KRIIFNLNKSI-PIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQL 222 (363)
Q Consensus 152 ~~g~~~----~~~~~~~l----~~i~~~L~~~~-~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i 222 (363)
+.++.. .......+ +.++++|+++. +.+...|++++.+.+..+.+++.||+||++||.|.. .+++..+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~-~~~~~~~~l 236 (318)
T cd01899 158 DAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIP-DAENNISKL 236 (318)
T ss_pred hcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHcc-ChHHHHHHH
Confidence 655433 22334445 88999997755 445567999998899989889999999999999963 234444444
Q ss_pred HHHHhcCCCcEEEeeHHHHHHHhcCCHHHHHHHH
Q psy2401 223 KIYAHNQNIPIIIICAKLEEEISDLNNIDKKFFL 256 (363)
Q Consensus 223 ~~~~~~~~~~~i~~sa~~e~~i~el~~~~~~~~l 256 (363)
+. ......++++||+.+.++.+|.++...+||
T Consensus 237 ~~--~~~~~~iI~iSA~~e~~L~~L~~~~i~~~l 268 (318)
T cd01899 237 RL--KYPDEIVVPTSAEAELALRRAAKQGLIKYD 268 (318)
T ss_pred Hh--hCCCCeEEEEeCcccccHHHHHHhhHHHhC
Confidence 32 223457999999987776666443333443
No 12
>KOG1486|consensus
Probab=100.00 E-value=5.1e-35 Score=260.63 Aligned_cols=286 Identities=23% Similarity=0.301 Sum_probs=220.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
-+|++||.|.+|||||+..||+...+.+.|.|||....+|.+.++| ..|+++|.||++.+++.
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g-----------------a~IQllDLPGIieGAsq 125 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG-----------------ANIQLLDLPGIIEGASQ 125 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC-----------------ceEEEecCccccccccc
Confidence 4899999999999999999999999999999999999999999999 88999999999999999
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHH--
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIE-- 160 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~-- 160 (363)
+++.|++..+..|.||++++|+|+... ..+-+.++.||.--++...+++....-|..+.|......
T Consensus 126 gkGRGRQviavArtaDlilMvLDatk~------------e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~ 193 (364)
T KOG1486|consen 126 GKGRGRQVIAVARTADLILMVLDATKS------------EDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTV 193 (364)
T ss_pred CCCCCceEEEEeecccEEEEEecCCcc------------hhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeee
Confidence 999999999999999999999999643 223445555655555544444333333333444321110
Q ss_pred --HHHHHHHHHhhhcCCCcccc-----cCCChHHHHHHhhh-cccccccEEEeccccccCCCchHHHHHHHHHHhcCCCc
Q psy2401 161 --LLKLLKRIIFNLNKSIPIRL-----MSLNNEELMSIKFL-NLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIP 232 (363)
Q Consensus 161 --~~~~l~~i~~~L~~~~~~~~-----~~~~~~e~~~~~~~-~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~ 232 (363)
-.-..+.+..+|.++++.+. -+.+.+| .++-. +...+.|++||-||.|.. .++++...++..+.
T Consensus 194 ~lT~~~ek~i~~ILheykI~Naevl~ReD~t~Dd--fIDvi~gnr~Y~~ClYvYnKID~v-----s~eevdrlAr~Pns- 265 (364)
T KOG1486|consen 194 PLTHCDEKLIYTILHEYKIHNAEVLFREDCTVDD--FIDVIEGNRVYIKCLYVYNKIDQV-----SIEEVDRLARQPNS- 265 (364)
T ss_pred ccccccHHHHHHHHHHHeeccceEEEecCCChHH--HHHHHhccceEEEEEEEeecccee-----cHHHHHHHhcCCCc-
Confidence 01123445566666665432 1456565 33333 566889999999999942 35667776666553
Q ss_pred EEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeCC----CCceEEEeecCCCCHHHhhhhh
Q psy2401 233 IIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTVG----KKEIRAWTIPNGTTAEQAAGII 308 (363)
Q Consensus 233 ~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~g----~~e~raw~~~~g~ta~~~A~~I 308 (363)
+++|..+ .-+++.+++.+++.|+|.+|||+. ||...|.++++|+|+.++|..|
T Consensus 266 -vViSC~m----------------------~lnld~lle~iWe~l~L~rvYtKk~g~~Pdfdd~~vlr~g~tve~~C~~i 322 (364)
T KOG1486|consen 266 -VVISCNM----------------------KLNLDRLLERIWEELNLVRVYTKKKGQRPDFDDPLVLRKGSTVEDVCHRI 322 (364)
T ss_pred -EEEEecc----------------------ccCHHHHHHHHHHHhceEEEEecCCCCCCCCCCceEEeCCCcHHHHHHHH
Confidence 4456652 456999999999999999999994 5667899999999999999999
Q ss_pred hcchhcccEEEEEecccccccccChhhHhhcCceeecCCCeeeeCCCEEEEE
Q psy2401 309 HTDIKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDGDILNFL 360 (363)
Q Consensus 309 HsD~~~gfi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdii~~~ 360 (363)
|.||...|.+|-||+- .+|+ ..+|+ |-.|.+.|.|||.+-
T Consensus 323 Hr~l~~qfkyAlVWGt----------Sakh-sPQrv-gl~h~~~dEdvvqi~ 362 (364)
T KOG1486|consen 323 HRTLAAQFKYALVWGT----------SAKH-SPQRV-GLGHTLEDEDVVQIV 362 (364)
T ss_pred HHHHHHhhceeeEecc----------cccc-Cccee-ccccccccccceeee
Confidence 9999999999999985 6776 57878 999999999999863
No 13
>KOG1487|consensus
Probab=99.96 E-value=1e-29 Score=227.58 Aligned_cols=284 Identities=23% Similarity=0.302 Sum_probs=218.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKG 83 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 83 (363)
+|+++|.|.+|||||+.-|++...+++.|-|+|....+|.+.+.+ .++++.|.||+++++..+
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g-----------------aKiqlldlpgiiegakdg 123 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG-----------------AKIQLLDLPGIIEGAKDG 123 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc-----------------cceeeecCcchhcccccC
Confidence 899999999999999999999988999999999999999999999 789999999999999999
Q ss_pred cchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhh-hhhhcccccCCchhHHHH
Q psy2401 84 EGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYI-DKENKKFFLKNEHSIELL 162 (363)
Q Consensus 84 ~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~-~~i~k~~~~g~~~~~~~~ 162 (363)
++.+++.++..|.|.+|++|+|+ ..|+..-..++.||.--++...+.+. ..+.|..++|- ....-.
T Consensus 124 kgrg~qviavartcnli~~vld~------------~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGI-nlt~~~ 190 (358)
T KOG1487|consen 124 KGRGKQVIAVARTCNLIFIVLDV------------LKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGI-NLTGTH 190 (358)
T ss_pred CCCccEEEEEeecccEEEEEeec------------cCcccHHHHHHHhhhcceeeccCCCCCccccccccCce-eeecch
Confidence 99999999999999999999999 56888888888888776665555533 22333334431 111100
Q ss_pred HHHHHHHhhhcCCCccc-----ccCCChHHHHHHhhh-cccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEe
Q psy2401 163 KLLKRIIFNLNKSIPIR-----LMSLNNEELMSIKFL-NLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIII 236 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~-----~~~~~~~e~~~~~~~-~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~ 236 (363)
=-++.++..|.+++..+ ..+-+.++ .+..+ +...+.|.+|+.||.|.-. ++++.-.. .....+|+
T Consensus 191 LdlD~~rsil~eyR~hsAdi~Lr~DaT~Dd--LIdvVegnr~yVp~iyvLNkIdsIS-----iEELdii~--~iphavpI 261 (358)
T KOG1487|consen 191 LDLDLQRSILSEYRIHSADIALRFDATADD--LIDVVEGNRIYVPCIYVLNKIDSIS-----IEELDIIY--TIPHAVPI 261 (358)
T ss_pred hhHHHHHHHHHHhhhcchheeeecCcchhh--hhhhhccCceeeeeeeeecccceee-----eeccceee--eccceeec
Confidence 11344445555544332 23555555 34444 3456889999999999521 22222111 11247888
Q ss_pred eHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeCC----CCceEEEeecCC-CCHHHhhhhhhcc
Q psy2401 237 CAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTVG----KKEIRAWTIPNG-TTAEQAAGIIHTD 311 (363)
Q Consensus 237 sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~g----~~e~raw~~~~g-~ta~~~A~~IHsD 311 (363)
||. +.-.+++++..+++.|+|+++||.. ||...+.+++.+ +|+.|+|.+||++
T Consensus 262 SA~----------------------~~wn~d~lL~~mweyL~LvriYtkPKgq~PDy~~pVvLs~~~~sv~dfc~~ih~~ 319 (358)
T KOG1487|consen 262 SAH----------------------TGWNFDKLLEKMWEYLKLVRIYTKPKGQPPDYTSPVVLSSERRSVEDFCNKIHKS 319 (358)
T ss_pred ccc----------------------cccchHHHHHHHhhcchheEEecCCCCCCCCCCCCceecCCcccHHHHHHHHHHH
Confidence 987 4677999999999999999999994 566778888776 6999999999999
Q ss_pred hhcccEEEEEecccccccccChhhHhhcCceeecCCCeeeeCCCEEEEE
Q psy2401 312 IKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDGDILNFL 360 (363)
Q Consensus 312 ~~~gfi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdii~~~ 360 (363)
+.+-|.+|-||+- .+|+.. +|+ |++|++.|.|||.|.
T Consensus 320 ~~~~fk~alvwg~----------s~kh~p-q~v-g~~h~l~dedvv~iv 356 (358)
T KOG1487|consen 320 ILKQFKYALVWGS----------SVKHNP-QRV-GKEHVLEDEDVVQIV 356 (358)
T ss_pred HHHhhhhheEecc----------ccCcCh-hhc-chhheeccchhhhhc
Confidence 9999999999974 677754 777 999999999999863
No 14
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.94 E-value=3.3e-26 Score=210.31 Aligned_cols=220 Identities=25% Similarity=0.325 Sum_probs=159.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKG 83 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 83 (363)
+++++|+||||||||+|+|++....++++||+|.+|..|.+.+++ .++++|||||+.++....
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~-----------------~~i~l~DtpG~~~~~~~~ 64 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG-----------------AKIQLLDLPGIIEGAADG 64 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC-----------------eEEEEEECCCcccccccc
Confidence 799999999999999999999888899999999999999999988 789999999998877666
Q ss_pred cchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhh--hhhhcccccCCchh---
Q psy2401 84 EGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYI--DKENKKFFLKNEHS--- 158 (363)
Q Consensus 84 ~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~--~~i~k~~~~g~~~~--- 158 (363)
.++.++++..++++|++++|+|++ ++.++.+.+..++...++. +.++. ..+.+...+| ...
T Consensus 65 ~~~~~~~l~~~~~ad~il~V~D~t------------~~~~~~~~~~~~l~~~gi~-l~~~~~~v~~~~~~~gg-i~~~~~ 130 (233)
T cd01896 65 KGRGRQVIAVARTADLILMVLDAT------------KPEGHREILERELEGVGIR-LNKRPPNITIKKKKKGG-INITST 130 (233)
T ss_pred hhHHHHHHHhhccCCEEEEEecCC------------cchhHHHHHHHHHHHcCce-ecCCCCeEEEEEEecCC-EEEecc
Confidence 667778889999999999999995 3444555666666655552 22221 2233332222 111
Q ss_pred HH-HHHHHHHHHhhhcCCCccccc-----CCChHHHHHHhhh-cccccccEEEeccccccCCCchHHHHHHHHHHhcCCC
Q psy2401 159 IE-LLKLLKRIIFNLNKSIPIRLM-----SLNNEELMSIKFL-NLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNI 231 (363)
Q Consensus 159 ~~-~~~~l~~i~~~L~~~~~~~~~-----~~~~~e~~~~~~~-~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~ 231 (363)
.+ .....+.+++.|.+.++.++. +.+.++ .+..+ +...++|+++++||.|.. +.+ ++..+... .
T Consensus 131 ~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~--~~~~~~~~~~y~p~iiV~NK~Dl~--~~~---~~~~~~~~--~ 201 (233)
T cd01896 131 VPLTKLDEKTIKAILREYKIHNADVLIREDITVDD--LIDVIEGNRVYIPCLYVYNKIDLI--SIE---ELDLLARQ--P 201 (233)
T ss_pred CCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHH--HHHHHhCCceEeeEEEEEECccCC--CHH---HHHHHhcC--C
Confidence 01 112356777777777665431 556555 23333 567899999999999963 222 22233332 3
Q ss_pred cEEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeC
Q psy2401 232 PIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTV 285 (363)
Q Consensus 232 ~~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~ 285 (363)
+++++||+ +..+++++.+.+++.|+||+|||+
T Consensus 202 ~~~~~SA~----------------------~g~gi~~l~~~i~~~L~~irvy~k 233 (233)
T cd01896 202 NSVVISAE----------------------KGLNLDELKERIWDKLGLIRVYTK 233 (233)
T ss_pred CEEEEcCC----------------------CCCCHHHHHHHHHHHhCcEEEecC
Confidence 58889998 578899999999999999999996
No 15
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.93 E-value=1.9e-25 Score=208.29 Aligned_cols=174 Identities=37% Similarity=0.554 Sum_probs=137.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKG 83 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 83 (363)
.|||||.||+|||||++++++++.++++|||||+.|+.|.+...+. .++.+-|+||++++++.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~----------------~sfv~ADIPGLIEGAs~G 224 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGG----------------ESFVVADIPGLIEGASEG 224 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCC----------------CcEEEecCcccccccccC
Confidence 4899999999999999999999999999999999999999998553 568999999999999999
Q ss_pred cchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHHH
Q psy2401 84 EGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELLK 163 (363)
Q Consensus 84 ~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~~ 163 (363)
.+++.+||.|+..+.+++||||++..+ ..||+++++.++.||..+.
T Consensus 225 ~GLG~~FLrHIERt~vL~hviD~s~~~-------~~dp~~~~~~i~~EL~~Y~--------------------------- 270 (369)
T COG0536 225 VGLGLRFLRHIERTRVLLHVIDLSPID-------GRDPIEDYQTIRNELEKYS--------------------------- 270 (369)
T ss_pred CCccHHHHHHHHhhheeEEEEecCccc-------CCCHHHHHHHHHHHHHHhh---------------------------
Confidence 999999999999999999999997533 2678888877766643211
Q ss_pred HHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhc-CCCc-EEEeeHHHH
Q psy2401 164 LLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHN-QNIP-IIIICAKLE 241 (363)
Q Consensus 164 ~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~-~~~~-~i~~sa~~e 241 (363)
..|..||.++|+||+|.+. +.+..+.+.+.+.+ .+.. .+++||.
T Consensus 271 -------------------------------~~L~~K~~ivv~NKiD~~~-~~e~~~~~~~~l~~~~~~~~~~~ISa~-- 316 (369)
T COG0536 271 -------------------------------PKLAEKPRIVVLNKIDLPL-DEEELEELKKALAEALGWEVFYLISAL-- 316 (369)
T ss_pred -------------------------------HHhccCceEEEEeccCCCc-CHHHHHHHHHHHHHhcCCCcceeeehh--
Confidence 2447899999999999654 55666666655553 3433 2238987
Q ss_pred HHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEE
Q psy2401 242 EEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRT 281 (363)
Q Consensus 242 ~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~ 281 (363)
+..|++.+++.+++.+.-.+
T Consensus 317 --------------------t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 317 --------------------TREGLDELLRALAELLEETK 336 (369)
T ss_pred --------------------cccCHHHHHHHHHHHHHHhh
Confidence 45666666666665555443
No 16
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=4.2e-25 Score=220.52 Aligned_cols=172 Identities=30% Similarity=0.540 Sum_probs=130.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.+|+|||.||||||||+|+|+++...+++|||||+.|+.|.+.+.+ .++.++||||+.++++.
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~-----------------~~f~laDtPGliegas~ 222 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD-----------------TRFTVADVPGLIPGASE 222 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC-----------------eEEEEEECCCCccccch
Confidence 4799999999999999999999988899999999999999999988 67999999999999998
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
+++++.+|+.++..||+++||||++... ...||..+++.+..||.....
T Consensus 223 g~gLg~~fLrhieradvLv~VVD~s~~e------~~rdp~~d~~~i~~EL~~y~~------------------------- 271 (500)
T PRK12296 223 GKGLGLDFLRHIERCAVLVHVVDCATLE------PGRDPLSDIDALEAELAAYAP------------------------- 271 (500)
T ss_pred hhHHHHHHHHHHHhcCEEEEEECCcccc------cccCchhhHHHHHHHHHHhhh-------------------------
Confidence 8899999999999999999999996421 124566666555544321110
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
.+.. + .++..+..+|+|+|+||+|++ ...+..+.+++.+.+.+.+++++||+..+
T Consensus 272 --------~l~~-------~---------~~~~~l~~kP~IVVlNKiDL~-da~el~e~l~~~l~~~g~~Vf~ISA~tge 326 (500)
T PRK12296 272 --------ALDG-------D---------LGLGDLAERPRLVVLNKIDVP-DARELAEFVRPELEARGWPVFEVSAASRE 326 (500)
T ss_pred --------cccc-------c---------chhhhhcCCCEEEEEECccch-hhHHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 0000 0 001233679999999999974 23344455555556667889999999766
Q ss_pred HHhcC
Q psy2401 243 EISDL 247 (363)
Q Consensus 243 ~i~el 247 (363)
.+.++
T Consensus 327 GLdEL 331 (500)
T PRK12296 327 GLREL 331 (500)
T ss_pred CHHHH
Confidence 66555
No 17
>KOG1489|consensus
Probab=99.92 E-value=1.2e-24 Score=200.62 Aligned_cols=159 Identities=33% Similarity=0.512 Sum_probs=122.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKG 83 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 83 (363)
.+|+||.||+|||||+|+|+.++..+++|+|||+.|..|.+.+++. .++.+-|+||+++++|..
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf----------------~q~tVADiPGiI~GAh~n 261 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF----------------SQITVADIPGIIEGAHMN 261 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc----------------ceeEeccCcccccccccc
Confidence 5899999999999999999999999999999999999999999884 459999999999999999
Q ss_pred cchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHHH
Q psy2401 84 EGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELLK 163 (363)
Q Consensus 84 ~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~~ 163 (363)
++++-+||.++..|+.+++|||++.... ..|..+++.+..||.
T Consensus 262 kGlG~~FLrHiER~~~l~fVvD~s~~~~-------~~p~~~~~lL~~ELe------------------------------ 304 (366)
T KOG1489|consen 262 KGLGYKFLRHIERCKGLLFVVDLSGKQL-------RNPWQQLQLLIEELE------------------------------ 304 (366)
T ss_pred CcccHHHHHHHHhhceEEEEEECCCccc-------CCHHHHHHHHHHHHH------------------------------
Confidence 9999999999999999999999975321 234444433332221
Q ss_pred HHHHHHhhhcCCCcccccCCChHHHHHHhhh-cccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 164 LLKRIIFNLNKSIPIRLMSLNNEELMSIKFL-NLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 164 ~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~-~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
.| ..++.+|.++|+||+|.+...+..++.+.+.+. +..++++||++++
T Consensus 305 -----------------------------~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq--~~~V~pvsA~~~e 353 (366)
T KOG1489|consen 305 -----------------------------LYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQ--NPHVVPVSAKSGE 353 (366)
T ss_pred -----------------------------HHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcC--CCcEEEeeecccc
Confidence 12 245899999999999974211222344443332 2249999999655
Q ss_pred HHhc
Q psy2401 243 EISD 246 (363)
Q Consensus 243 ~i~e 246 (363)
++.+
T Consensus 354 gl~~ 357 (366)
T KOG1489|consen 354 GLEE 357 (366)
T ss_pred chHH
Confidence 4433
No 18
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=6.7e-24 Score=209.32 Aligned_cols=89 Identities=45% Similarity=0.813 Sum_probs=82.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKG 83 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 83 (363)
.|+|||.||||||||+|+|+++.+.+++|||||..|+.|.+.+++. .++.++|+||+..+++.+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~----------------~~~~laD~PGliega~~~ 223 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDG----------------RSFVMADIPGLIEGASEG 223 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCC----------------ceEEEEECCCCccccccc
Confidence 6999999999999999999999888999999999999999988732 579999999999999988
Q ss_pred cchhhHHHhhccccCEEEEEEeccc
Q psy2401 84 EGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 84 ~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.+++.+|+.++..+|+++||+|+++
T Consensus 224 ~gLg~~fLrhier~~llI~VID~s~ 248 (424)
T PRK12297 224 VGLGHQFLRHIERTRVIVHVIDMSG 248 (424)
T ss_pred chHHHHHHHHHhhCCEEEEEEeCCc
Confidence 8999999999999999999999863
No 19
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=2.2e-23 Score=200.62 Aligned_cols=90 Identities=43% Similarity=0.821 Sum_probs=82.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
..|+|||.||||||||+|+|+++...+++|||||+.|+.|.+.+.+. .++.++|+||+.++++.
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~----------------~~~~i~D~PGli~ga~~ 222 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY----------------KSFVIADIPGLIEGASE 222 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC----------------cEEEEEeCCCccCCCCc
Confidence 36999999999999999999999888999999999999999998542 56899999999999998
Q ss_pred ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
+.+++.+|+.+++.+|+++||+|+++
T Consensus 223 ~~gLg~~flrhie~a~vlI~ViD~s~ 248 (335)
T PRK12299 223 GAGLGHRFLKHIERTRLLLHLVDIEA 248 (335)
T ss_pred cccHHHHHHHHhhhcCEEEEEEcCCC
Confidence 88999999999999999999999963
No 20
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.89 E-value=2.5e-22 Score=193.07 Aligned_cols=90 Identities=44% Similarity=0.823 Sum_probs=82.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
..|+|||.||||||||+|+|+++...+++|||||..|+.|.+.+++. .++.++||||+.++++.
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~----------------~~~~i~D~PGli~~a~~ 221 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDG----------------RSFVIADIPGLIEGASE 221 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCc----------------eEEEEEeCCCcccCCcc
Confidence 36999999999999999999999888999999999999999988763 56899999999999988
Q ss_pred ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
+.+++..|+.++..+|++++|+|++.
T Consensus 222 ~~gLg~~flrhierad~ll~VvD~s~ 247 (329)
T TIGR02729 222 GAGLGHRFLKHIERTRVLLHLIDISP 247 (329)
T ss_pred cccHHHHHHHHHHhhCEEEEEEcCcc
Confidence 88899999999999999999999864
No 21
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.89 E-value=7e-23 Score=175.57 Aligned_cols=87 Identities=39% Similarity=0.608 Sum_probs=69.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.+|+++|.||||||||||+|||..+.+++||++|.++..|.+.+.+ .++.++|+||+++..+.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~-----------------~~~~lvDlPG~ysl~~~ 63 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD-----------------QQVELVDLPGIYSLSSK 63 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT-----------------EEEEEEE----SSSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC-----------------ceEEEEECCCcccCCCC
Confidence 4799999999999999999999999999999999999999999988 78999999998764433
Q ss_pred --ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 --GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 --~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.+.+...++. ....|++++|+|++
T Consensus 64 s~ee~v~~~~l~-~~~~D~ii~VvDa~ 89 (156)
T PF02421_consen 64 SEEERVARDYLL-SEKPDLIIVVVDAT 89 (156)
T ss_dssp SHHHHHHHHHHH-HTSSSEEEEEEEGG
T ss_pred CcHHHHHHHHHh-hcCCCEEEEECCCC
Confidence 2333344443 36799999999995
No 22
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=5.4e-22 Score=194.64 Aligned_cols=88 Identities=42% Similarity=0.817 Sum_probs=81.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKG 83 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 83 (363)
.|+|||+||||||||+|+|+++++.+++|||||+.|+.|.+.+.+. .++.++||||+.++++.+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~----------------~~i~~vDtPGi~~~a~~~ 224 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE----------------RSFVVADIPGLIEGASEG 224 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC----------------cEEEEEeCCCccccccch
Confidence 6999999999999999999999889999999999999999998762 358999999999988888
Q ss_pred cchhhHHHhhccccCEEEEEEecc
Q psy2401 84 EGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 84 ~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.+++.+++.++..+|++++|+|++
T Consensus 225 ~~Lg~~~l~~i~radvlL~VVD~s 248 (390)
T PRK12298 225 AGLGIRFLKHLERCRVLLHLIDIA 248 (390)
T ss_pred hhHHHHHHHHHHhCCEEEEEeccC
Confidence 888999999999999999999985
No 23
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.86 E-value=7.7e-21 Score=178.15 Aligned_cols=225 Identities=15% Similarity=0.124 Sum_probs=167.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHcC---Ccc---cc------------CCCceeecceeEEEEeCCccccccccccccccccc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKL---KIS---AE------------NYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFP 65 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~---~~~---~~------------~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~ 65 (363)
+|+++|++|+|||||+++|... ... +. ...++|++.....+.+++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~----------------- 63 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD----------------- 63 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC-----------------
Confidence 5899999999999999999632 111 11 234777777777888877
Q ss_pred eeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHh-hh
Q psy2401 66 AIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEK-YI 144 (363)
Q Consensus 66 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~-~~ 144 (363)
.+++++||||+.++. ......++.+|++++|||+..+. ..+++..+..+....+ .+
T Consensus 64 ~~i~liDTPG~~df~-------~~~~~~l~~aD~ailVVDa~~g~----------------~~~t~~~~~~~~~~~~p~i 120 (270)
T cd01886 64 HRINIIDTPGHVDFT-------IEVERSLRVLDGAVAVFDAVAGV----------------EPQTETVWRQADRYNVPRI 120 (270)
T ss_pred EEEEEEECCCcHHHH-------HHHHHHHHHcCEEEEEEECCCCC----------------CHHHHHHHHHHHHcCCCEE
Confidence 789999999976532 35667889999999999996432 1123444555544444 46
Q ss_pred hhhhcccccCCchhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhh-cccccccEEE-e--ccccccCCCchHHHH
Q psy2401 145 DKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFL-NLLTIKPIIF-V--ANVKENGFKNNLLLD 220 (363)
Q Consensus 145 ~~i~k~~~~g~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~-~~l~~kp~i~-v--~Nk~d~~~~~~~~~~ 220 (363)
..+||+++.+ .+....++++++.+.....+..+|++... .++++ ++++.|.+.| - ..+.+....|.+..+
T Consensus 121 vviNK~D~~~----a~~~~~~~~l~~~l~~~~~~~~~Pisa~~--~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~ 194 (270)
T cd01886 121 AFVNKMDRTG----ADFFRVVEQIREKLGANPVPLQLPIGEED--DFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLE 194 (270)
T ss_pred EEEECCCCCC----CCHHHHHHHHHHHhCCCceEEEeccccCC--CceEEEEccccEEEecccCCCceeEEecCCHHHHH
Confidence 7899996543 23556788888888877777788998765 67777 8888888887 2 111121113566677
Q ss_pred HHHHHHhcCCCcEEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeC
Q psy2401 221 QLKIYAHNQNIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTV 285 (363)
Q Consensus 221 ~i~~~~~~~~~~~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~ 285 (363)
.++++ +..+-+.+++.|++++++||++..++.+.+.+.+++++....++|||-.
T Consensus 195 ~~~~~-----------r~~l~e~vae~dd~L~e~yl~~~~~~~~el~~~l~~~~~~~~~~PV~~g 248 (270)
T cd01886 195 EAEEA-----------REELIETLAEFDDELMEKYLEGEEITEEEIKAAIRKGTIANKIVPVLCG 248 (270)
T ss_pred HHHHH-----------HHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCcEEEEEeC
Confidence 77776 6678899999999999999999999999999999999999999999975
No 24
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=8.3e-21 Score=184.10 Aligned_cols=90 Identities=31% Similarity=0.369 Sum_probs=79.9
Q ss_pred CC-cEEEEEeCCCCcHHHHHHHHHcC-CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccC
Q psy2401 1 MN-LKCGLIGLPNVGKSTLFNALTKL-KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVS 78 (363)
Q Consensus 1 m~-~~i~lvG~~g~GKSTL~n~Lt~~-~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 78 (363)
|. ..|+|||+||||||||||+|++. .+-++++||+|+++..+...|.+ ..+.++||+|+.+
T Consensus 1 m~~~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~-----------------~~f~lIDTgGl~~ 63 (444)
T COG1160 1 MSTPVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG-----------------REFILIDTGGLDD 63 (444)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC-----------------ceEEEEECCCCCc
Confidence 55 67999999999999999999999 57799999999999999999999 6799999999986
Q ss_pred CC--CcccchhhHHHhhccccCEEEEEEecc
Q psy2401 79 GA--SKGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 79 ~~--~~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.. .....+..+.+..+..||++|+|||+.
T Consensus 64 ~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~ 94 (444)
T COG1160 64 GDEDELQELIREQALIAIEEADVILFVVDGR 94 (444)
T ss_pred CCchHHHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 55 334556678899999999999999984
No 25
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.84 E-value=4e-21 Score=144.77 Aligned_cols=65 Identities=34% Similarity=0.462 Sum_probs=59.0
Q ss_pred CEEEEeC-----------CCCceEEEeecCCCCHHHhhhhhhcchhcccEEEEEecccccccccChhhHhhcCceeecCC
Q psy2401 279 LRTYFTV-----------GKKEIRAWTIPNGTTAEQAAGIIHTDIKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGK 347 (363)
Q Consensus 279 li~~ft~-----------g~~e~raw~~~~g~ta~~~A~~IHsD~~~gfi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk 347 (363)
||+|||+ |+++.+||++++|+||.|+|+.||+||+++|++|+||+ .|.+|+
T Consensus 1 li~VYpv~~~~~~~~~~~g~d~~~~~~l~~g~tv~d~a~~IH~d~~~~F~~A~v~~------------------~~~vg~ 62 (76)
T cd04938 1 LIPVYPVKNIHTFTNGSGGNVFRDCVLVKKGTTVGDVARKIHGDLEKGFIEAVGGR------------------RRLEGK 62 (76)
T ss_pred CEEEEEcCCCccccCcCCCCccceeEEEcCCCCHHHHHHHHhHHHHhccEEEEEcc------------------CEEECC
Confidence 6899996 36789999999999999999999999999999999996 235599
Q ss_pred CeeeeCCCEEEEEe
Q psy2401 348 KYLVEDGDILNFLF 361 (363)
Q Consensus 348 ~y~v~dgdii~~~f 361 (363)
+|+|+|||||+|++
T Consensus 63 d~~l~d~DVv~i~~ 76 (76)
T cd04938 63 DVILGKNDILKFKT 76 (76)
T ss_pred CEEecCCCEEEEEC
Confidence 99999999999985
No 26
>COG1159 Era GTPase [General function prediction only]
Probab=99.84 E-value=3.9e-20 Score=170.78 Aligned_cols=88 Identities=30% Similarity=0.408 Sum_probs=77.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
-|+|||+||||||||+|+|.|++ +-+|+.|.||++...|.+..++ .++.|+||||+..+.+.
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~-----------------~QiIfvDTPGih~pk~~ 70 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN-----------------AQIIFVDTPGIHKPKHA 70 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC-----------------ceEEEEeCCCCCCcchH
Confidence 48899999999999999999996 5599999999999999999887 88999999999877554
Q ss_pred -ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 -GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 -~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
++.|.+...+.+..+|++++|||+.+
T Consensus 71 l~~~m~~~a~~sl~dvDlilfvvd~~~ 97 (298)
T COG1159 71 LGELMNKAARSALKDVDLILFVVDADE 97 (298)
T ss_pred HHHHHHHHHHHHhccCcEEEEEEeccc
Confidence 55566778889999999999999953
No 27
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.83 E-value=6.4e-20 Score=159.07 Aligned_cols=89 Identities=46% Similarity=0.851 Sum_probs=76.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKG 83 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 83 (363)
+|+++|++|||||||+|+|++....++.+|++|..|..+.+.+++. ..+.+|||||+.......
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~----------------~~~~l~DtpG~~~~~~~~ 65 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG----------------RSFVVADIPGLIEGASEG 65 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC----------------CeEEEEecCcccCccccc
Confidence 6899999999999999999998777889999999999999887762 379999999987655544
Q ss_pred cchhhHHHhhccccCEEEEEEeccc
Q psy2401 84 EGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 84 ~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
..+...++..++.+|++++|+|++.
T Consensus 66 ~~~~~~~~~~~~~~d~vi~v~D~~~ 90 (170)
T cd01898 66 KGLGHRFLRHIERTRLLLHVIDLSG 90 (170)
T ss_pred CCchHHHHHHHHhCCEEEEEEecCC
Confidence 5566788888889999999999964
No 28
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.81 E-value=4.7e-19 Score=154.19 Aligned_cols=85 Identities=59% Similarity=1.027 Sum_probs=73.7
Q ss_pred EEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeC-CccccccccccccccccceeEEEEeeecccCCCCcccc
Q psy2401 7 LIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVP-DKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKGEG 85 (363)
Q Consensus 7 lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~-~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~ 85 (363)
++|++|||||||+|+|++....++++|++|.+|+.+.+.++ + .++.+|||||+.+.....+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~i~DtpG~~~~~~~~~~ 63 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG-----------------ARIQVADIPGLIEGASEGRG 63 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC-----------------CeEEEEeccccchhhhcCCC
Confidence 58999999999999999987678899999999999998887 5 67899999999765555566
Q ss_pred hhhHHHhhccccCEEEEEEeccc
Q psy2401 86 LGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 86 l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
+.++++..++.+|++++|+|+++
T Consensus 64 ~~~~~~~~~~~~d~ii~v~d~~~ 86 (176)
T cd01881 64 LGNQFLAHIRRADAILHVVDASE 86 (176)
T ss_pred ccHHHHHHHhccCEEEEEEeccC
Confidence 66678888899999999999964
No 29
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.79 E-value=5.5e-19 Score=171.91 Aligned_cols=90 Identities=30% Similarity=0.376 Sum_probs=79.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcC-CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKL-KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~-~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
+++++|+|+||||||||+|+|++. .+-|++.||||++.....+.++| .++.++||+|+-+..
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G-----------------~pv~l~DTAGiRet~ 279 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG-----------------IPVRLVDTAGIRETD 279 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC-----------------EEEEEEecCCcccCc
Confidence 589999999999999999999999 68899999999999999999999 889999999998655
Q ss_pred Ccccchh-hHHHhhccccCEEEEEEeccc
Q psy2401 81 SKGEGLG-NKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 81 ~~~~~l~-~~~l~~~~~aD~il~Vvda~~ 108 (363)
..-+..| .+....+.+||.+++|+|+++
T Consensus 280 d~VE~iGIeRs~~~i~~ADlvL~v~D~~~ 308 (454)
T COG0486 280 DVVERIGIERAKKAIEEADLVLFVLDASQ 308 (454)
T ss_pred cHHHHHHHHHHHHHHHhCCEEEEEEeCCC
Confidence 5544443 567788899999999999964
No 30
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.78 E-value=2.7e-18 Score=161.26 Aligned_cols=87 Identities=23% Similarity=0.261 Sum_probs=70.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+|+++|+||||||||+|+|++.. +.++++|+||.++..+....++ .++.++||||+....+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~-----------------~qii~vDTPG~~~~~~~ 64 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA-----------------SQIIFIDTPGFHEKKHS 64 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC-----------------cEEEEEECcCCCCCcch
Confidence 68999999999999999999986 4589999999998777766555 67899999999765332
Q ss_pred -ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 -GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 -~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.+.+...+...++.+|++++|+|++
T Consensus 65 l~~~~~~~~~~~l~~aDvvl~VvD~~ 90 (270)
T TIGR00436 65 LNRLMMKEARSAIGGVDLILFVVDSD 90 (270)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECC
Confidence 2223345667789999999999985
No 31
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.78 E-value=2.8e-18 Score=160.98 Aligned_cols=226 Identities=18% Similarity=0.154 Sum_probs=154.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCcc---c---------cCC------CceeecceeEEEEeCCccccccccccccccccc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKIS---A---------ENY------PFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFP 65 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~---~---------~~~------p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~ 65 (363)
+|+|+|++|||||||+++|...... . .++ .+.|+.+....+.+++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~----------------- 63 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG----------------- 63 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC-----------------
Confidence 5899999999999999999753111 1 011 1334455555566655
Q ss_pred eeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHh-hh
Q psy2401 66 AIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEK-YI 144 (363)
Q Consensus 66 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~-~~ 144 (363)
..+++|||||..++. ......++.+|++++|+|+..+... ..+..|..+..... .+
T Consensus 64 ~~i~liDtPG~~~f~-------~~~~~~l~~aD~~i~Vvd~~~g~~~----------------~~~~~~~~~~~~~~p~i 120 (268)
T cd04170 64 HKINLIDTPGYADFV-------GETRAALRAADAALVVVSAQSGVEV----------------GTEKLWEFADEAGIPRI 120 (268)
T ss_pred EEEEEEECcCHHHHH-------HHHHHHHHHCCEEEEEEeCCCCCCH----------------HHHHHHHHHHHcCCCEE
Confidence 679999999975432 3566777899999999999643211 12223333333333 35
Q ss_pred hhhhcccccCCchhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhh-cccccccEEEeccc-cccCCCchHHHHHH
Q psy2401 145 DKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFL-NLLTIKPIIFVANV-KENGFKNNLLLDQL 222 (363)
Q Consensus 145 ~~i~k~~~~g~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~-~~l~~kp~i~v~Nk-~d~~~~~~~~~~~i 222 (363)
..+||+++.+. +....++.+++.+.....+..+|+...+ .++++ +.+..+.+.|-.++ ......|.+..+.+
T Consensus 121 ivvNK~D~~~~----~~~~~~~~l~~~~~~~~~~~~ip~~~~~--~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 194 (268)
T cd04170 121 IFINKMDRERA----DFDKTLAALQEAFGRPVVPLQLPIGEGD--DFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEV 194 (268)
T ss_pred EEEECCccCCC----CHHHHHHHHHHHhCCCeEEEEecccCCC--ceeEEEEcccCEEEEccCCCcceeccCCHHHHHHH
Confidence 68888865432 3456778888888765555666766554 56666 67777777663222 11111345566666
Q ss_pred HHHHhcCCCcEEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeCC
Q psy2401 223 KIYAHNQNIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTVG 286 (363)
Q Consensus 223 ~~~~~~~~~~~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~g 286 (363)
+++ ...+.+.+++.|++++++||++..++.+.+.+.+++++..-.++|||...
T Consensus 195 ~~~-----------~~~l~e~~a~~dd~l~e~yl~~~~~~~~~l~~~l~~~~~~~~~~pv~~gS 247 (268)
T cd04170 195 AEA-----------REELLEAVAETDDELMEKYLEGGELTEEELHAGLRRALRAGLLVPVLCGS 247 (268)
T ss_pred HHH-----------HHHHHHHHhhCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEEee
Confidence 665 55678889999999999999999999999999999999999999999873
No 32
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.76 E-value=2.5e-17 Score=151.67 Aligned_cols=184 Identities=16% Similarity=0.155 Sum_probs=126.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCcc---c---c------C------CCceeecceeEEEEeCCccccccccccccccccc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKIS---A---E------N------YPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFP 65 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~---~---~------~------~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~ 65 (363)
+|+++|++|+|||||+++|+..... . . + ..+.|+......+.+++
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~----------------- 63 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED----------------- 63 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC-----------------
Confidence 5899999999999999999753111 0 0 0 11233344444555555
Q ss_pred eeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhh
Q psy2401 66 AIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYID 145 (363)
Q Consensus 66 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~ 145 (363)
.++++|||||+.++. ......++.+|++++|+|+.++.. . ..+.
T Consensus 64 ~~i~liDTPG~~~f~-------~~~~~~l~~aD~~IlVvd~~~g~~------------~----~~~~------------- 107 (237)
T cd04168 64 TKVNLIDTPGHMDFI-------AEVERSLSVLDGAILVISAVEGVQ------------A----QTRI------------- 107 (237)
T ss_pred EEEEEEeCCCccchH-------HHHHHHHHHhCeEEEEEeCCCCCC------------H----HHHH-------------
Confidence 789999999986543 255677799999999999853210 0 0000
Q ss_pred hhhcccccCCchhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCC-CchHHHHHHHH
Q psy2401 146 KENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGF-KNNLLLDQLKI 224 (363)
Q Consensus 146 ~i~k~~~~g~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~-~~~~~~~~i~~ 224 (363)
.++.. ....+|.++++||.|..- ...+.++.+++
T Consensus 108 --------------------------------------------~~~~~-~~~~~P~iivvNK~D~~~a~~~~~~~~i~~ 142 (237)
T cd04168 108 --------------------------------------------LWRLL-RKLNIPTIIFVNKIDRAGADLEKVYQEIKE 142 (237)
T ss_pred --------------------------------------------HHHHH-HHcCCCEEEEEECccccCCCHHHHHHHHHH
Confidence 01101 013679999999999742 12455666666
Q ss_pred HHhcCCCc------------EEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeC
Q psy2401 225 YAHNQNIP------------IIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTV 285 (363)
Q Consensus 225 ~~~~~~~~------------~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~ 285 (363)
.+..+-.+ ...+...+-+.+++.||+++++||++..++++.+...++++.....++|||-.
T Consensus 143 ~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~g 215 (237)
T cd04168 143 KLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHG 215 (237)
T ss_pred HHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEc
Confidence 55443111 11234788889999999999999999999999999999999999999999975
No 33
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.75 E-value=1.8e-17 Score=160.80 Aligned_cols=89 Identities=30% Similarity=0.522 Sum_probs=72.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.+|+|+|+||||||||+|+|++..+.++++||+|.+|....+.+++. .++.+|||||+.+....
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~----------------~~i~l~DT~G~~~~l~~ 253 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG----------------GEVLLTDTVGFIRDLPH 253 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC----------------ceEEEEecCcccccCCH
Confidence 68999999999999999999998877889999999999999998543 57899999998653221
Q ss_pred c--cchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 G--EGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~--~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
. +. .+..+..+++||++++|+|+++
T Consensus 254 ~lie~-f~~tle~~~~ADlil~VvD~s~ 280 (351)
T TIGR03156 254 ELVAA-FRATLEEVREADLLLHVVDASD 280 (351)
T ss_pred HHHHH-HHHHHHHHHhCCEEEEEEECCC
Confidence 1 11 1234566889999999999964
No 34
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.74 E-value=1.5e-17 Score=155.68 Aligned_cols=219 Identities=16% Similarity=0.095 Sum_probs=145.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-c--cc-------------cCCC------ceeecceeEEEEeCCcccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-I--SA-------------ENYP------FCTIEPNIGIIEVPDKRLKHLNNIVKT 60 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~--~~-------------~~~p------~~t~~~~~g~v~~~~~~~~~l~~~~~~ 60 (363)
++|+|+|++|+|||||+++|+... + .. .++. +.|+......+.+.+
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~------------ 70 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRD------------ 70 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCC------------
Confidence 589999999999999999997431 1 11 1111 122222233444444
Q ss_pred ccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHH
Q psy2401 61 KKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAIL 140 (363)
Q Consensus 61 ~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~ 140 (363)
.++++|||||..++. ......++.+|++++|+|+..+. ....+..+..+...
T Consensus 71 -----~~i~liDTPG~~df~-------~~~~~~l~~aD~~IlVvda~~g~----------------~~~~~~i~~~~~~~ 122 (267)
T cd04169 71 -----CVINLLDTPGHEDFS-------EDTYRTLTAVDSAVMVIDAAKGV----------------EPQTRKLFEVCRLR 122 (267)
T ss_pred -----EEEEEEECCCchHHH-------HHHHHHHHHCCEEEEEEECCCCc----------------cHHHHHHHHHHHhc
Confidence 789999999976543 24566778999999999995421 11223344444333
Q ss_pred Hh-hhhhhhcccccCCchhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhh-cccccccEEEeccccccCCCchHH
Q psy2401 141 EK-YIDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFL-NLLTIKPIIFVANVKENGFKNNLL 218 (363)
Q Consensus 141 ~~-~~~~i~k~~~~g~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~-~~l~~kp~i~v~Nk~d~~~~~~~~ 218 (363)
.. .+..+||++..+ .....+++++++.|.....+..+|+..++ .++++ ++++.|.+.|.-+......
T Consensus 123 ~~P~iivvNK~D~~~----a~~~~~~~~l~~~l~~~~~~~~~Pi~~~~--~~~g~vd~~~~~a~~~~~~~~~~~~----- 191 (267)
T cd04169 123 GIPIITFINKLDREG----RDPLELLDEIEEELGIDCTPLTWPIGMGK--DFKGVYDRRTGEVELYDRGAGGATI----- 191 (267)
T ss_pred CCCEEEEEECCccCC----CCHHHHHHHHHHHHCCCceeEEecccCCC--ceEEEEEhhhCEEEEecCCCCCccc-----
Confidence 34 357788885432 23456688888888877777788888765 67777 8888888877211000000
Q ss_pred HHHHHHHHhcCCCcEEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeC
Q psy2401 219 LDQLKIYAHNQNIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTV 285 (363)
Q Consensus 219 ~~~i~~~~~~~~~~~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~ 285 (363)
....+.+.+.+.+++.+++++++|+++..++.+.+.++++.++....++|||-.
T Consensus 192 -------------~~~~~p~~~~e~~~e~~~~l~e~~~e~~~~~~~~~~~~~~~~~~~~~~~Pv~~g 245 (267)
T cd04169 192 -------------APEETKGLDDPKLDELGGDLAEQLREELELLEGAGPEFDQEAFLAGELTPVFFG 245 (267)
T ss_pred -------------eeccCCcccHHHHHhcCHHHHHHHhCCCccchhhhHHHhHHHHHcCCEEEEEec
Confidence 000112233467889999999999999888888899999999999999999965
No 35
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.74 E-value=7.9e-17 Score=139.45 Aligned_cols=89 Identities=24% Similarity=0.335 Sum_probs=65.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.+|+++|++|||||||+|+|++....++++|++|..+..+.+.+.+ ..+++|||||+.+....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~~~ 63 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKY-----------------LRWQVIDTPGLLDRPLE 63 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCc-----------------eEEEEEECCCcCCcccc
Confidence 4799999999999999999999877778889999999888887766 68999999998543221
Q ss_pred cc-chhhHHHhhc-cccCEEEEEEeccc
Q psy2401 83 GE-GLGNKFLAHI-RETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~-~l~~~~l~~~-~~aD~il~Vvda~~ 108 (363)
.+ .+....+..+ ..+|++++|+|+++
T Consensus 64 ~~~~~~~~~~~~~~~~~d~~l~v~d~~~ 91 (168)
T cd01897 64 ERNTIEMQAITALAHLRAAVLFLFDPSE 91 (168)
T ss_pred CCchHHHHHHHHHHhccCcEEEEEeCCc
Confidence 11 1111112122 23689999999853
No 36
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.6e-17 Score=167.98 Aligned_cols=88 Identities=34% Similarity=0.551 Sum_probs=76.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccC--C
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVS--G 79 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~--~ 79 (363)
..++|++|.||||||||||+|||+...++||||.|.+...|.....+ ..++++|+||.++ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~-----------------~~i~ivDLPG~YSL~~ 65 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG-----------------HEIEIVDLPGTYSLTA 65 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC-----------------ceEEEEeCCCcCCCCC
Confidence 35799999999999999999999999999999999999999999999 6799999999975 4
Q ss_pred CCcccchhhHHHhhccccCEEEEEEecc
Q psy2401 80 ASKGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 80 ~~~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.+.++...++|+.. ..+|+++.|+|++
T Consensus 66 ~S~DE~Var~~ll~-~~~D~ivnVvDAt 92 (653)
T COG0370 66 YSEDEKVARDFLLE-GKPDLIVNVVDAT 92 (653)
T ss_pred CCchHHHHHHHHhc-CCCCEEEEEcccc
Confidence 45566666677653 5689999999995
No 37
>COG2262 HflX GTPases [General function prediction only]
Probab=99.73 E-value=3.5e-17 Score=156.81 Aligned_cols=88 Identities=32% Similarity=0.529 Sum_probs=75.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
..|+|+|.+|+|||||||+||+....+.+..|+|.+|....+.+++. .++.+-||.|+++....
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g----------------~~vlLtDTVGFI~~LP~ 256 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDG----------------RKVLLTDTVGFIRDLPH 256 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCC----------------ceEEEecCccCcccCCh
Confidence 47999999999999999999999999999999999999999999864 57899999999876543
Q ss_pred ccchhhHH---HhhccccCEEEEEEeccc
Q psy2401 83 GEGLGNKF---LAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~~l~~~~---l~~~~~aD~il~Vvda~~ 108 (363)
.+...| +.....||+++||||+++
T Consensus 257 --~LV~AFksTLEE~~~aDlllhVVDaSd 283 (411)
T COG2262 257 --PLVEAFKSTLEEVKEADLLLHVVDASD 283 (411)
T ss_pred --HHHHHHHHHHHHhhcCCEEEEEeecCC
Confidence 344444 566678999999999964
No 38
>PRK15494 era GTPase Era; Provisional
Probab=99.73 E-value=6.1e-17 Score=156.72 Aligned_cols=88 Identities=24% Similarity=0.326 Sum_probs=71.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCc-cccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKI-SAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~-~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.+|+++|+||||||||+|+|++... .+++.|++|.+...+.+.+++ .++.+|||||+....+
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~-----------------~qi~~~DTpG~~~~~~ 115 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD-----------------TQVILYDTPGIFEPKG 115 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC-----------------eEEEEEECCCcCCCcc
Confidence 4899999999999999999999854 467889999988888888887 6799999999864332
Q ss_pred -cccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 -KGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 -~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
....+.+..+..++.||++++|+|+.
T Consensus 116 ~l~~~~~r~~~~~l~~aDvil~VvD~~ 142 (339)
T PRK15494 116 SLEKAMVRCAWSSLHSADLVLLIIDSL 142 (339)
T ss_pred cHHHHHHHHHHHHhhhCCEEEEEEECC
Confidence 22333444556688999999999974
No 39
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.72 E-value=3.3e-17 Score=152.77 Aligned_cols=89 Identities=25% Similarity=0.391 Sum_probs=73.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
..+.+.|+||||||||+++||+++.++++|||||...+.|++.... ..++++||||+.+-.-.
T Consensus 169 pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~-----------------~R~QvIDTPGlLDRPl~ 231 (346)
T COG1084 169 PTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY-----------------LRIQVIDTPGLLDRPLE 231 (346)
T ss_pred CeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC-----------------ceEEEecCCcccCCChH
Confidence 5789999999999999999999999999999999999999999988 67999999999863322
Q ss_pred -ccchhhHHHhhccc-cCEEEEEEeccc
Q psy2401 83 -GEGLGNKFLAHIRE-TNIVIHVIRCFK 108 (363)
Q Consensus 83 -~~~l~~~~l~~~~~-aD~il~Vvda~~ 108 (363)
.-.+-.+...+++. .++|++++|.++
T Consensus 232 ErN~IE~qAi~AL~hl~~~IlF~~D~Se 259 (346)
T COG1084 232 ERNEIERQAILALRHLAGVILFLFDPSE 259 (346)
T ss_pred HhcHHHHHHHHHHHHhcCeEEEEEcCcc
Confidence 22233455555555 678999999864
No 40
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.72 E-value=9.2e-17 Score=137.93 Aligned_cols=82 Identities=23% Similarity=0.356 Sum_probs=61.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC---ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK---ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSG 79 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~---~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
|.|+++|.+|||||||+|+|++.. ......+++|.++....+.+.+. .++++|||||..+
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~~~DtpG~~~- 63 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSG----------------KRLGFIDVPGHEK- 63 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCC----------------cEEEEEECCChHH-
Confidence 579999999999999999999752 22223456777776666666521 5799999999743
Q ss_pred CCcccchhhHHHhhccccCEEEEEEecc
Q psy2401 80 ASKGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 80 ~~~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+...+...++.+|++++|+|+.
T Consensus 64 ------~~~~~~~~~~~ad~ii~V~d~~ 85 (164)
T cd04171 64 ------FIKNMLAGAGGIDLVLLVVAAD 85 (164)
T ss_pred ------HHHHHHhhhhcCCEEEEEEECC
Confidence 2234556678999999999985
No 41
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.71 E-value=1.1e-16 Score=137.52 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=66.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|++|||||||++++++.....+..|+++.++....+.+++.. .++++|||||.....
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~~~D~~G~~~~~-- 63 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKT---------------VRLQLWDTAGQERFR-- 63 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEE---------------EEEEEEECCCcHHHH--
Confidence 489999999999999999999987777778888888877788777643 578999999954321
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
......++.+|++++|+|+.
T Consensus 64 -----~~~~~~~~~~~~ii~v~d~~ 83 (161)
T cd01861 64 -----SLIPSYIRDSSVAVVVYDIT 83 (161)
T ss_pred -----HHHHHHhccCCEEEEEEECc
Confidence 12344568899999999984
No 42
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.71 E-value=2.1e-16 Score=136.71 Aligned_cols=150 Identities=19% Similarity=0.148 Sum_probs=96.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|++|||||||++++++........|..+.+.....+.+++.. .++++||+||......
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~~- 66 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKT---------------IKLQIWDTAGQERFRT- 66 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCcHhHHH-
Confidence 689999999999999999999876555444544444445556666533 6789999999643322
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
.....++.+|++++|+|+++.
T Consensus 67 ------~~~~~~~~~~~ii~v~d~~~~----------------------------------------------------- 87 (166)
T cd01869 67 ------ITSSYYRGAHGIIIVYDVTDQ----------------------------------------------------- 87 (166)
T ss_pred ------HHHHHhCcCCEEEEEEECcCH-----------------------------------------------------
Confidence 223456889999999998531
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
+.++.+..|+. .+..+. ....|+++++||.|.........+..+.+....+.+++++||+..+
T Consensus 88 ~s~~~l~~~~~----------------~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 150 (166)
T cd01869 88 ESFNNVKQWLQ----------------EIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNAT 150 (166)
T ss_pred HHHHhHHHHHH----------------HHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCc
Confidence 11222222222 111111 1457999999999964211222345566666678899999999543
Q ss_pred HH
Q psy2401 243 EI 244 (363)
Q Consensus 243 ~i 244 (363)
++
T Consensus 151 ~v 152 (166)
T cd01869 151 NV 152 (166)
T ss_pred CH
Confidence 33
No 43
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.70 E-value=3.2e-16 Score=135.32 Aligned_cols=83 Identities=23% Similarity=0.176 Sum_probs=62.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|++|||||||++++++........|..+.+.....+..++.. ..+.+||+||......
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~D~~g~~~~~~- 67 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKT---------------IKAQIWDTAGQERYRA- 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEE---------------EEEEEEeCCChHHHHH-
Confidence 589999999999999999999876665666766666666667766643 5789999999643221
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 68 ------~~~~~~~~~~~~i~v~d~~ 86 (165)
T cd01868 68 ------ITSAYYRGAVGALLVYDIT 86 (165)
T ss_pred ------HHHHHHCCCCEEEEEEECc
Confidence 2234558899999999985
No 44
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.70 E-value=9.5e-17 Score=131.22 Aligned_cols=87 Identities=37% Similarity=0.508 Sum_probs=73.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHcC-CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKL-KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~-~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+|+++|++|||||||+|+|++. ...+++.|++|..+..+.+.+++ ..+.++||||+.+....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~-----------------~~~~~vDtpG~~~~~~~ 63 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN-----------------KKFILVDTPGINDGESQ 63 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT-----------------EEEEEEESSSCSSSSHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece-----------------eeEEEEeCCCCcccchh
Confidence 6899999999999999999997 56799999999999888888877 67789999999876544
Q ss_pred cc--chhhHHHhhccccCEEEEEEecc
Q psy2401 83 GE--GLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~--~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.. ...++++..++.+|++++|+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~d~ii~vv~~~ 90 (116)
T PF01926_consen 64 DNDGKEIRKFLEQISKSDLIIYVVDAS 90 (116)
T ss_dssp HHHHHHHHHHHHHHCTESEEEEEEETT
T ss_pred hHHHHHHHHHHHHHHHCCEEEEEEECC
Confidence 32 13446788889999999999973
No 45
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.69 E-value=5.7e-16 Score=133.27 Aligned_cols=82 Identities=20% Similarity=0.165 Sum_probs=57.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|++|||||||++++.+... ...++.++.........+++.. ..+++|||||..+...
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 65 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCEIDGQW---------------AILDILDTAGQEEFSA- 65 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceEEEEEEECCEE---------------EEEEEEECCCCcchhH-
Confidence 6999999999999999999997543 3444444433333344455532 5788999999754322
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 66 ------~~~~~~~~~~~~ilv~d~~ 84 (164)
T cd04145 66 ------MREQYMRTGEGFLLVFSVT 84 (164)
T ss_pred ------HHHHHHhhCCEEEEEEECC
Confidence 2224558899999999985
No 46
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.69 E-value=3e-16 Score=152.52 Aligned_cols=185 Identities=21% Similarity=0.215 Sum_probs=129.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcC-CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKL-KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~-~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
+.++||||.||+|||||+|+|++. .+-+++.||||+++....+.+++ ..+.++||+|+-+..
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~-----------------~~~~liDTAGiRrk~ 240 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG-----------------RKYVLIDTAGIRRKG 240 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC-----------------eEEEEEECCCCCccc
Confidence 479999999999999999999998 68899999999999999999999 678999999996544
Q ss_pred Ccccch----hhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCc
Q psy2401 81 SKGEGL----GNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNE 156 (363)
Q Consensus 81 ~~~~~l----~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~ 156 (363)
.-.++. ..+.+..+..+|++++|+|++++.
T Consensus 241 ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~---------------------------------------------- 274 (444)
T COG1160 241 KITESVEKYSVARTLKAIERADVVLLVIDATEGI---------------------------------------------- 274 (444)
T ss_pred ccccceEEEeehhhHhHHhhcCEEEEEEECCCCc----------------------------------------------
Confidence 332221 236678889999999999996421
Q ss_pred hhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHH----HHHHHHhcC-CC
Q psy2401 157 HSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLD----QLKIYAHNQ-NI 231 (363)
Q Consensus 157 ~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~----~i~~~~~~~-~~ 231 (363)
++.+. .+.++-.-..+|.++|+||-|.-...+...+ +++..+... ..
T Consensus 275 ---------------------------~~qD~-~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a 326 (444)
T COG1160 275 ---------------------------SEQDL-RIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFA 326 (444)
T ss_pred ---------------------------hHHHH-HHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCC
Confidence 11111 1222333478999999999996321123333 333333322 35
Q ss_pred cEEEeeHHHHHHHhcCCHHHHHHHHh-hcCCCchhHHHHHHHHHHhC
Q psy2401 232 PIIIICAKLEEEISDLNNIDKKFFLD-NLGLKETKLNDLIRASFSLL 277 (363)
Q Consensus 232 ~~i~~sa~~e~~i~el~~~~~~~~l~-~~~l~~~~l~~l~~~~~~~l 277 (363)
+++++||+....+.++.+.-.+.|=. ..-++.+-|.+.++.+...-
T Consensus 327 ~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~a~~~~ 373 (444)
T COG1160 327 PIVFISALTGQGLDKLFEAIKEIYECATRRISTSLLNRVLEDAVAKH 373 (444)
T ss_pred eEEEEEecCCCChHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhC
Confidence 79999999888877765433332211 22345677888888665543
No 47
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.69 E-value=5.2e-16 Score=139.28 Aligned_cols=90 Identities=30% Similarity=0.479 Sum_probs=69.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.+|+++|++|||||||+|+|++....+.+.+++|..+..+.+.+++. ..+.+|||||+.+....
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~i~Dt~G~~~~~~~ 105 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG----------------REVLLTDTVGFIRDLPH 105 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC----------------ceEEEeCCCccccCCCH
Confidence 58999999999999999999998777778889999998888877663 37899999998654322
Q ss_pred cc-chhhHHHhhccccCEEEEEEeccc
Q psy2401 83 GE-GLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~-~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.. ......+..++.+|++++|+|+++
T Consensus 106 ~~~~~~~~~~~~~~~~d~ii~v~D~~~ 132 (204)
T cd01878 106 QLVEAFRSTLEEVAEADLLLHVVDASD 132 (204)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEECCC
Confidence 10 001123345678999999999853
No 48
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.69 E-value=3.5e-16 Score=165.16 Aligned_cols=89 Identities=31% Similarity=0.482 Sum_probs=71.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 1 MNLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 1 m~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
|..+|+++|+||||||||||+|+|....++++|++|.+...+.+.+++ .+++++||||+.+..
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~-----------------~~i~lvDtPG~ysl~ 64 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD-----------------HQVTLVDLPGTYSLT 64 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc-----------------eEEEEEECCCccccc
Confidence 347899999999999999999999988999999999999999988877 679999999997654
Q ss_pred Cc------ccchhhHHHhhccccCEEEEEEecc
Q psy2401 81 SK------GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 81 ~~------~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.. .+.+.+.++ ....+|++++|+|++
T Consensus 65 ~~~~~~s~~E~i~~~~l-~~~~aD~vI~VvDat 96 (772)
T PRK09554 65 TISSQTSLDEQIACHYI-LSGDADLLINVVDAS 96 (772)
T ss_pred cccccccHHHHHHHHHH-hccCCCEEEEEecCC
Confidence 32 111112222 125799999999984
No 49
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.69 E-value=6.4e-16 Score=132.83 Aligned_cols=82 Identities=21% Similarity=0.195 Sum_probs=57.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|.+|||||||++++...... ..++.++.+.....+.+++.. ..+++|||||..+...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~- 64 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQIEVDGQQ---------------CMLEILDTAGTEQFTA- 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCchhhhEEEEEEECCEE---------------EEEEEEECCCccccch-
Confidence 68999999999999999999975432 334333433334445555532 5788999999755433
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+ ....++.+|++++|+|+.
T Consensus 65 ---~---~~~~~~~~~~~ilv~d~~ 83 (163)
T cd04136 65 ---M---RDLYIKNGQGFVLVYSIT 83 (163)
T ss_pred ---H---HHHHhhcCCEEEEEEECC
Confidence 1 123458899999999984
No 50
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.69 E-value=4.9e-16 Score=133.80 Aligned_cols=83 Identities=18% Similarity=0.219 Sum_probs=58.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|++|||||||++++++........|..+.+.....+.+++.. ..+++|||||......
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~- 64 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKE---------------VRVNFFDLSGHPEYLE- 64 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeE---------------EEEEEEECCccHHHHH-
Confidence 489999999999999999999876544444433334434455555533 6899999999743221
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 65 ------~~~~~~~~~d~~ilv~D~~ 83 (168)
T cd04119 65 ------VRNEFYKDTQGVLLVYDVT 83 (168)
T ss_pred ------HHHHHhccCCEEEEEEECC
Confidence 2223458899999999985
No 51
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.69 E-value=5e-16 Score=132.64 Aligned_cols=83 Identities=34% Similarity=0.542 Sum_probs=66.8
Q ss_pred EEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc--cc
Q psy2401 7 LIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK--GE 84 (363)
Q Consensus 7 lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~--~~ 84 (363)
|+|++|||||||+|++++....++++|++|.+...+.+.+++ ..+.+|||||+...... ..
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~~~~~~~ 63 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG-----------------KEIEIVDLPGTYSLSPYSEDE 63 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC-----------------eEEEEEECCCccccCCCChhH
Confidence 589999999999999999877888999999999988888877 67899999998754432 12
Q ss_pred chhhHHHhhccccCEEEEEEecc
Q psy2401 85 GLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 85 ~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.+...++.. ..+|++++|+|+.
T Consensus 64 ~~~~~~~~~-~~~d~vi~v~d~~ 85 (158)
T cd01879 64 KVARDFLLG-EKPDLIVNVVDAT 85 (158)
T ss_pred HHHHHHhcC-CCCcEEEEEeeCC
Confidence 233344433 6899999999984
No 52
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.69 E-value=5.7e-16 Score=134.17 Aligned_cols=83 Identities=19% Similarity=0.143 Sum_probs=56.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|++|||||||++++++........|..+.+.....+..++.. ..+.+|||||..+...
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~g~~~~~~- 65 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKR---------------VKLQIWDTAGQERYRT- 65 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEE---------------EEEEEEECCChHHHHH-
Confidence 799999999999999999999875543333322222222233333322 6789999999653322
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 66 ------~~~~~~~~~~~~l~v~d~~ 84 (165)
T cd01865 66 ------ITTAYYRGAMGFILMYDIT 84 (165)
T ss_pred ------HHHHHccCCcEEEEEEECC
Confidence 2345578999999999984
No 53
>PRK00089 era GTPase Era; Reviewed
Probab=99.68 E-value=6e-16 Score=146.86 Aligned_cols=87 Identities=29% Similarity=0.397 Sum_probs=68.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.|+++|+||||||||+|+|+|.. +.+++.|.+|.....+....++ .++.++||||+......
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~-----------------~qi~~iDTPG~~~~~~~ 69 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD-----------------AQIIFVDTPGIHKPKRA 69 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC-----------------ceEEEEECCCCCCchhH
Confidence 58999999999999999999985 4578889999887777666544 67999999998764432
Q ss_pred -ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 -GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 -~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.+.+.......+..+|++++|+|++
T Consensus 70 l~~~~~~~~~~~~~~~D~il~vvd~~ 95 (292)
T PRK00089 70 LNRAMNKAAWSSLKDVDLVLFVVDAD 95 (292)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEeCC
Confidence 2223334456778999999999985
No 54
>PRK11058 GTPase HflX; Provisional
Probab=99.68 E-value=5.4e-16 Score=154.00 Aligned_cols=89 Identities=28% Similarity=0.493 Sum_probs=71.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.+|+|+|.||||||||||+|++....++++||+|.++..+.+.+++. .++.+|||||+.+....
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~----------------~~~~l~DTaG~~r~lp~ 261 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV----------------GETVLADTVGFIRHLPH 261 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC----------------CeEEEEecCcccccCCH
Confidence 47999999999999999999998777899999999999999888763 36789999998653221
Q ss_pred --ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 --GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 --~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.+.+ ...+..++.||++++|+|+++
T Consensus 262 ~lve~f-~~tl~~~~~ADlIL~VvDaS~ 288 (426)
T PRK11058 262 DLVAAF-KATLQETRQATLLLHVVDAAD 288 (426)
T ss_pred HHHHHH-HHHHHHhhcCCEEEEEEeCCC
Confidence 1111 234566789999999999964
No 55
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.68 E-value=3.7e-16 Score=156.61 Aligned_cols=90 Identities=27% Similarity=0.316 Sum_probs=72.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
+.+|+++|+||||||||+|+|++.. +.++++|++|.++....+.+++ .++.+|||||+.++.
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g-----------------~~i~l~DT~G~~~~~ 277 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG-----------------IPLRLIDTAGIRETD 277 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC-----------------eEEEEEeCCCCCCCc
Confidence 3689999999999999999999975 4688999999999999999887 678999999986533
Q ss_pred Ccccch-hhHHHhhccccCEEEEEEeccc
Q psy2401 81 SKGEGL-GNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 81 ~~~~~l-~~~~l~~~~~aD~il~Vvda~~ 108 (363)
...+.. ....+..++.+|++++|+|+++
T Consensus 278 ~~ie~~gi~~~~~~~~~aD~il~VvD~s~ 306 (449)
T PRK05291 278 DEVEKIGIERSREAIEEADLVLLVLDASE 306 (449)
T ss_pred cHHHHHHHHHHHHHHHhCCEEEEEecCCC
Confidence 221111 1235567899999999999953
No 56
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.68 E-value=5.9e-16 Score=138.83 Aligned_cols=90 Identities=13% Similarity=0.232 Sum_probs=61.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|.+|||||||++.+++........|.++.+.....+.+++.. ..+++|||||+..+...
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~---------------~~l~i~Dt~G~~~~~~~ 65 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRV---------------YDLHILDVPNMQRYPGT 65 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEE---------------EEEEEEeCCCcccCCcc
Confidence 489999999999999999999865544444544434333455666643 57889999998653321
Q ss_pred -ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 -GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 -~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+..........++.+|++++|+|++
T Consensus 66 ~~~e~~~~~~~~~~~ad~iilv~D~~ 91 (198)
T cd04142 66 AGQEWMDPRFRGLRNSRAFILVYDIC 91 (198)
T ss_pred chhHHHHHHHhhhccCCEEEEEEECC
Confidence 1111122344578999999999985
No 57
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.68 E-value=3e-16 Score=136.17 Aligned_cols=150 Identities=21% Similarity=0.129 Sum_probs=95.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|++|||||||++++++........|..+.+.....+.+++.. ..+++|||||......
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~D~~g~~~~~~- 67 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKK---------------IKLQIWDTAGQERFRT- 67 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEE---------------EEEEEEeCCchHHHHH-
Confidence 689999999999999999999876554444443333334455555532 5789999999643222
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
.....++++|++++|+|+.+.
T Consensus 68 ------~~~~~~~~ad~~i~v~d~~~~----------------------------------------------------- 88 (167)
T cd01867 68 ------ITTAYYRGAMGIILVYDITDE----------------------------------------------------- 88 (167)
T ss_pred ------HHHHHhCCCCEEEEEEECcCH-----------------------------------------------------
Confidence 223456899999999998421
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
..++.+..|+.. +..+ .....|+++++||.|.........+...+++...+.+++++||+...
T Consensus 89 ~s~~~~~~~~~~----------------i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 151 (167)
T cd01867 89 KSFENIRNWMRN----------------IEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANI 151 (167)
T ss_pred HHHHhHHHHHHH----------------HHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 112222222221 1111 11467999999999974212223445556666667889999998543
Q ss_pred HH
Q psy2401 243 EI 244 (363)
Q Consensus 243 ~i 244 (363)
++
T Consensus 152 ~v 153 (167)
T cd01867 152 NV 153 (167)
T ss_pred CH
Confidence 33
No 58
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.68 E-value=1.1e-15 Score=130.79 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=55.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|.+|||||||+|++++.... ..++.++.+.....+.+++.. ..+++|||||......
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 64 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGET---------------CLLDILDTAGQEEYSA- 64 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-CCcCCcchheEEEEEEECCEE---------------EEEEEEECCCCcchHH-
Confidence 58999999999999999999986432 233333333233344555532 5688999999643222
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|..
T Consensus 65 ------l~~~~~~~~~~~i~v~~~~ 83 (162)
T cd04138 65 ------MRDQYMRTGEGFLCVFAIN 83 (162)
T ss_pred ------HHHHHHhcCCEEEEEEECC
Confidence 2234567899999999984
No 59
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.68 E-value=1.3e-15 Score=136.52 Aligned_cols=158 Identities=18% Similarity=0.089 Sum_probs=97.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeC-CccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVP-DKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~-~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
+||+++|.+|||||||++++++........|....+.....+.++ +.. ..+.+|||||......
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~---------------~~l~l~Dt~G~~~~~~ 65 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTV---------------VRLQLWDIAGQERFGG 65 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCE---------------EEEEEEECCCchhhhh
Confidence 589999999999999999999865433333433333334445555 332 6789999999743322
Q ss_pred cccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHH
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIEL 161 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~ 161 (363)
.....++++|++++|+|++..
T Consensus 66 -------~~~~~~~~a~~~ilv~D~t~~---------------------------------------------------- 86 (201)
T cd04107 66 -------MTRVYYRGAVGAIIVFDVTRP---------------------------------------------------- 86 (201)
T ss_pred -------hHHHHhCCCCEEEEEEECCCH----------------------------------------------------
Confidence 223456899999999998431
Q ss_pred HHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCC-CcEEEeeHHH
Q psy2401 162 LKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQN-IPIIIICAKL 240 (363)
Q Consensus 162 ~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~-~~~i~~sa~~ 240 (363)
+.++.+..|+.. ......+......|+++++||.|+........+++++++...+ .+++.+||+.
T Consensus 87 -~s~~~~~~~~~~-------------i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~ 152 (201)
T cd04107 87 -STFEAVLKWKAD-------------LDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKE 152 (201)
T ss_pred -HHHHHHHHHHHH-------------HHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCC
Confidence 111112222110 0000001112567999999999974112234556777777777 5899999996
Q ss_pred HHHHhcCC
Q psy2401 241 EEEISDLN 248 (363)
Q Consensus 241 e~~i~el~ 248 (363)
..++.++.
T Consensus 153 ~~~v~e~f 160 (201)
T cd04107 153 GINIEEAM 160 (201)
T ss_pred CCCHHHHH
Confidence 65555443
No 60
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.67 E-value=1.2e-15 Score=131.78 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=57.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
+.||+++|.+|||||||++++..... ..+++.++.+.....+.+++.. ..+++|||||......
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~ 64 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDGQQ---------------CMLEILDTAGTEQFTA 64 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEECCEE---------------EEEEEEECCCcccchh
Confidence 36899999999999999999986432 3445444443333445555532 5688999999754333
Q ss_pred cccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|.+
T Consensus 65 -------~~~~~~~~~d~~ilv~d~~ 83 (164)
T cd04175 65 -------MRDLYMKNGQGFVLVYSIT 83 (164)
T ss_pred -------HHHHHHhhCCEEEEEEECC
Confidence 2223558899999999984
No 61
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.67 E-value=1.3e-15 Score=129.57 Aligned_cols=89 Identities=27% Similarity=0.314 Sum_probs=70.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
+++|+++|++|+|||||+|++++.. +..+++|++|.++..+.+.+.+ ..+.+|||||+.+..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~DtpG~~~~~ 63 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG-----------------IPVRLIDTAGIRETE 63 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC-----------------EEEEEEECCCcCCCc
Confidence 5799999999999999999999875 4577889999888887777766 578999999987654
Q ss_pred Cccc-chhhHHHhhccccCEEEEEEecc
Q psy2401 81 SKGE-GLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 81 ~~~~-~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.... ...+.....++.+|++++|+|++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~v~v~d~~ 91 (157)
T cd04164 64 DEIEKIGIERAREAIEEADLVLFVIDAS 91 (157)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEEECC
Confidence 3211 11234556678999999999995
No 62
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.67 E-value=1.1e-15 Score=132.90 Aligned_cols=83 Identities=22% Similarity=0.160 Sum_probs=60.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|++|||||||++++++........|..+.+.....+.+++.. ..+.+||+||..+.
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~--- 66 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQ---------------IKLQIWDTAGQESF--- 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCcHHH---
Confidence 689999999999999999999876544444444445555556666533 57899999995322
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.......++.+|++++|+|+.
T Consensus 67 ----~~~~~~~~~~~d~il~v~d~~ 87 (168)
T cd01866 67 ----RSITRSYYRGAAGALLVYDIT 87 (168)
T ss_pred ----HHHHHHHhccCCEEEEEEECC
Confidence 223345668999999999984
No 63
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.67 E-value=1e-15 Score=131.50 Aligned_cols=83 Identities=27% Similarity=0.206 Sum_probs=60.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|++|||||||++++++........|..+.+.....+.+++.. ..+.+||+||.....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~~~~-- 63 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKR---------------VKLQIWDTAGQERFR-- 63 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEE---------------EEEEEEECCChHHHH--
Confidence 589999999999999999999876655555655555555556665532 578999999954322
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
......++.+|++++|+|+.
T Consensus 64 -----~~~~~~~~~~d~~ilv~d~~ 83 (164)
T smart00175 64 -----SITSSYYRGAVGALLVYDIT 83 (164)
T ss_pred -----HHHHHHhCCCCEEEEEEECC
Confidence 12234458899999999984
No 64
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.67 E-value=1.4e-15 Score=131.05 Aligned_cols=82 Identities=18% Similarity=0.154 Sum_probs=55.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|++|||||||++++.+..... .++.++.+.....+.+++.. ..+.+|||||..+...
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~g~~~~~~- 63 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVD-DYDPTIEDSYRKQIEIDGEV---------------CLLDILDTAGQEEFSA- 63 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCchhhhEEEEEEECCEE---------------EEEEEEECCCcccchH-
Confidence 489999999999999999999864332 33333333333334444432 6789999999754322
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 64 ------~~~~~~~~~~~~i~v~d~~ 82 (164)
T smart00173 64 ------MRDQYMRTGEGFLLVYSIT 82 (164)
T ss_pred ------HHHHHHhhCCEEEEEEECC
Confidence 1223457899999999984
No 65
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.66 E-value=2.1e-15 Score=129.63 Aligned_cols=83 Identities=24% Similarity=0.195 Sum_probs=56.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|++|||||||+++|++........|..+.+.....+.+++.. ..+.+||+||......
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~g~~~~~~- 64 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKK---------------VKLAIWDTAGQERFRT- 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEE---------------EEEEEEECCCchhhhh-
Confidence 489999999999999999999875443333322222223334444422 6789999999644322
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 65 ------~~~~~~~~~d~~i~v~d~~ 83 (161)
T cd01863 65 ------LTSSYYRGAQGVILVYDVT 83 (161)
T ss_pred ------hhHHHhCCCCEEEEEEECC
Confidence 2234458899999999984
No 66
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.66 E-value=9.8e-16 Score=152.93 Aligned_cols=89 Identities=35% Similarity=0.458 Sum_probs=72.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcC-CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKL-KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~-~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
+.+|+++|+||||||||+|+|++. .+.++++|++|.++..+.+.+++ .++.+|||||+.+..
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g-----------------~~v~l~DTaG~~~~~ 265 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG-----------------ILIKLLDTAGIREHA 265 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC-----------------EEEEEeeCCCcccch
Confidence 479999999999999999999987 45789999999999999999988 678999999986543
Q ss_pred Ccccchh-hHHHhhccccCEEEEEEecc
Q psy2401 81 SKGEGLG-NKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 81 ~~~~~l~-~~~l~~~~~aD~il~Vvda~ 107 (363)
...+..+ ......++.+|++++|+|++
T Consensus 266 ~~ie~~gi~~~~~~~~~aD~il~V~D~s 293 (442)
T TIGR00450 266 DFVERLGIEKSFKAIKQADLVIYVLDAS 293 (442)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEECC
Confidence 3222121 24456779999999999985
No 67
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.66 E-value=2.3e-15 Score=129.71 Aligned_cols=82 Identities=23% Similarity=0.175 Sum_probs=57.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|.+|||||||++.+........ ++.+..+.....+.+++.. ..+++|||||...+..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~- 64 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEK-YDPTIEDFYRKEIEVDSSP---------------SVLEILDTAGTEQFAS- 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCchhheEEEEEEECCEE---------------EEEEEEECCCcccccc-
Confidence 5899999999999999999987544322 3223323334456665532 5688999999755443
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+ ....++++|++++|+|++
T Consensus 65 ---~---~~~~~~~ad~~i~v~d~~ 83 (163)
T cd04176 65 ---M---RDLYIKNGQGFIVVYSLV 83 (163)
T ss_pred ---h---HHHHHhhCCEEEEEEECC
Confidence 1 223458899999999985
No 68
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.66 E-value=4.1e-16 Score=135.10 Aligned_cols=152 Identities=20% Similarity=0.223 Sum_probs=93.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCcee-ecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCT-IEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t-~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
.+||+++|++|||||||++++++.... ..+|.++ .+...-.+.+++.. ..+.+|||||.....
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~ 65 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVNGQK---------------IKLQIWDTAGQERFR 65 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCcccceeEEEEEEEECCEE---------------EEEEEEECCCcHHHH
Confidence 479999999999999999999976443 2333222 11112234454432 678999999964322
Q ss_pred CcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHH
Q psy2401 81 SKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIE 160 (363)
Q Consensus 81 ~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~ 160 (363)
. .....++++|++++|+|+++.
T Consensus 66 ~-------~~~~~~~~~~~~ilv~d~~~~--------------------------------------------------- 87 (166)
T cd04122 66 A-------VTRSYYRGAAGALMVYDITRR--------------------------------------------------- 87 (166)
T ss_pred H-------HHHHHhcCCCEEEEEEECCCH---------------------------------------------------
Confidence 1 234566899999999998531
Q ss_pred HHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHH
Q psy2401 161 LLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKL 240 (363)
Q Consensus 161 ~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~ 240 (363)
..++.+..|+.. +..+ .....|+++++||.|.........+..++++.+.+.+++.+||+.
T Consensus 88 --~s~~~~~~~~~~----------------~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 148 (166)
T cd04122 88 --STYNHLSSWLTD----------------ARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKT 148 (166)
T ss_pred --HHHHHHHHHHHH----------------HHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCC
Confidence 111222222220 1101 114578999999999742112234566677777788999999995
Q ss_pred HHHHhc
Q psy2401 241 EEEISD 246 (363)
Q Consensus 241 e~~i~e 246 (363)
.+++.+
T Consensus 149 ~~~i~e 154 (166)
T cd04122 149 GENVED 154 (166)
T ss_pred CCCHHH
Confidence 544433
No 69
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.66 E-value=1.2e-15 Score=152.39 Aligned_cols=87 Identities=26% Similarity=0.366 Sum_probs=71.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+|+++|+||||||||+|+|++.. +.++++|++|.+...+.+.+.+ ..+.+|||||+......
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~-----------------~~~~liDTpG~~~~~~~ 63 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG-----------------REFILIDTGGIEEDDDG 63 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC-----------------eEEEEEECCCCCCcchh
Confidence 58999999999999999999984 5688999999999999999988 67999999998543221
Q ss_pred -ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 -GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 -~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.+.+..+....++.+|++++|+|+.
T Consensus 64 ~~~~~~~~~~~~~~~ad~vl~vvD~~ 89 (429)
T TIGR03594 64 LDKQIREQAEIAIEEADVILFVVDGR 89 (429)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCC
Confidence 1233456677889999999999985
No 70
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.65 E-value=1.6e-15 Score=131.07 Aligned_cols=80 Identities=31% Similarity=0.328 Sum_probs=59.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCcc----ccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCC
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKIS----AENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSG 79 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~----~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
+|+++|++|||||||+++|++.... ....+.+|+..+.+.+.+++ ..+.+|||||....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~ 63 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGN-----------------ARLKFWDLGGQESL 63 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECC-----------------EEEEEEECCCChhh
Confidence 5899999999999999999875322 11223446666677777766 78999999997543
Q ss_pred CCcccchhhHHHhhccccCEEEEEEecc
Q psy2401 80 ASKGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 80 ~~~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.. .....++.+|++++|+|++
T Consensus 64 ~~-------~~~~~~~~~~~~v~vvd~~ 84 (167)
T cd04160 64 RS-------LWDKYYAECHAIIYVIDST 84 (167)
T ss_pred HH-------HHHHHhCCCCEEEEEEECc
Confidence 22 3345578999999999984
No 71
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.65 E-value=2e-15 Score=159.07 Aligned_cols=226 Identities=15% Similarity=0.122 Sum_probs=155.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCc---c---ccC------------CCceeecceeEEEEeCCcccccccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKI---S---AEN------------YPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIF 64 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~---~---~~~------------~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~ 64 (363)
++|+|+|++|+|||||+|+|..... . +.+ .+++|++.....+.+++
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~---------------- 74 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG---------------- 74 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC----------------
Confidence 5899999999999999999964211 1 111 35778888888888887
Q ss_pred ceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHh-h
Q psy2401 65 PAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEK-Y 143 (363)
Q Consensus 65 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~-~ 143 (363)
.++++|||||+.++.. .....++.+|++++|+|+.++.. .+++..+..+..... .
T Consensus 75 -~~i~liDTPG~~~~~~-------~~~~~l~~~D~~ilVvda~~g~~----------------~~~~~~~~~~~~~~~p~ 130 (689)
T TIGR00484 75 -HRINIIDTPGHVDFTV-------EVERSLRVLDGAVAVLDAVGGVQ----------------PQSETVWRQANRYEVPR 130 (689)
T ss_pred -eEEEEEECCCCcchhH-------HHHHHHHHhCEEEEEEeCCCCCC----------------hhHHHHHHHHHHcCCCE
Confidence 7899999999876432 45567789999999999964321 112333444443344 4
Q ss_pred hhhhhcccccCCchhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhh-cccccccEEEecc-cccc--CCCchHHH
Q psy2401 144 IDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFL-NLLTIKPIIFVAN-VKEN--GFKNNLLL 219 (363)
Q Consensus 144 ~~~i~k~~~~g~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~-~~l~~kp~i~v~N-k~d~--~~~~~~~~ 219 (363)
+..+||++..+ .+....++.+++.+.....+..+|++... .+.++ +++..++..|-.. ..+. ...+.+..
T Consensus 131 ivviNK~D~~~----~~~~~~~~~i~~~l~~~~~~~~ipis~~~--~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (689)
T TIGR00484 131 IAFVNKMDKTG----ANFLRVVNQIKQRLGANAVPIQLPIGAED--NFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLL 204 (689)
T ss_pred EEEEECCCCCC----CCHHHHHHHHHHHhCCCceeEEeccccCC--CceEEEECccceEEecccCCCceeeeccCCHHHH
Confidence 57788886543 23456778888888765555566777554 35554 5666666655321 1111 01234445
Q ss_pred HHHHHHHhcCCCcEEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeC
Q psy2401 220 DQLKIYAHNQNIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTV 285 (363)
Q Consensus 220 ~~i~~~~~~~~~~~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~ 285 (363)
+.+.++ .-++.+.+++.+++++++||++..++.+.+...+++......++|+|-.
T Consensus 205 ~~~~~~-----------~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~l~~~~~~~~~~PV~~g 259 (689)
T TIGR00484 205 EQAKEL-----------RENLVEAVAEFDEELMEKYLEGEELTIEEIKNAIRKGVLNCEFFPVLCG 259 (689)
T ss_pred HHHHHH-----------HHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCEEEEEec
Confidence 555554 5567788999999999999998888888898889988888999999965
No 72
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.65 E-value=1.1e-15 Score=138.66 Aligned_cols=84 Identities=18% Similarity=0.178 Sum_probs=60.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.+|||||||++.+++........|+.+.+.....+.+++.. ...+++|||||...+..
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~--------------~~~~~i~Dt~G~~~~~~- 65 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNL--------------NVTLQVWDIGGQSIGGK- 65 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCC--------------EEEEEEEECCCcHHHHH-
Confidence 589999999999999999999876554445555555555556665421 16799999999543221
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 66 ------l~~~~~~~ad~iilV~D~t 84 (215)
T cd04109 66 ------MLDKYIYGAHAVFLVYDVT 84 (215)
T ss_pred ------HHHHHhhcCCEEEEEEECC
Confidence 2224468999999999985
No 73
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.65 E-value=2e-15 Score=128.54 Aligned_cols=85 Identities=28% Similarity=0.380 Sum_probs=66.8
Q ss_pred EEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC-cc
Q psy2401 6 GLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS-KG 83 (363)
Q Consensus 6 ~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~-~~ 83 (363)
+++|.+|||||||+|+|++.. ...+++|++|.+.....+.+.+ ..+.+|||||+..... ..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~i~DtpG~~~~~~~~~ 63 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG-----------------REFILIDTGGIEPDDEGIS 63 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC-----------------eEEEEEECCCCCCchhHHH
Confidence 589999999999999999874 4467888889888877777766 6789999999876543 12
Q ss_pred cchhhHHHhhccccCEEEEEEecc
Q psy2401 84 EGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 84 ~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
..+.+.+...++.+|++++|+|+.
T Consensus 64 ~~~~~~~~~~~~~~d~ii~v~d~~ 87 (157)
T cd01894 64 KEIREQAELAIEEADVILFVVDGR 87 (157)
T ss_pred HHHHHHHHHHHHhCCEEEEEEecc
Confidence 223345556778999999999984
No 74
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.65 E-value=1.8e-15 Score=132.65 Aligned_cols=162 Identities=14% Similarity=0.079 Sum_probs=93.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|++|||||||++++++........|....+.....+.+....... . ........+.+|||||.....
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~i~Dt~G~~~~~-- 77 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGG---T--LGRGQRIHLQLWDTAGQERFR-- 77 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccc---c--ccCCCEEEEEEEeCCChHHHH--
Confidence 689999999999999999999865443333322223333334333210000 0 000112578999999954321
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
......++++|++++|+|+.+.
T Consensus 78 -----~~~~~~~~~~~~~i~v~d~~~~----------------------------------------------------- 99 (180)
T cd04127 78 -----SLTTAFFRDAMGFLLIFDLTNE----------------------------------------------------- 99 (180)
T ss_pred -----HHHHHHhCCCCEEEEEEECCCH-----------------------------------------------------
Confidence 1233456899999999998421
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
+.+..+..|+.. +.........|+++|+||.|.........+..++++...+.+++++||+...
T Consensus 100 ~s~~~~~~~~~~----------------i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~ 163 (180)
T cd04127 100 QSFLNVRNWMSQ----------------LQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGT 163 (180)
T ss_pred HHHHHHHHHHHH----------------HHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 112222222221 1111112356899999999963211222345667777778899999999544
Q ss_pred HHh
Q psy2401 243 EIS 245 (363)
Q Consensus 243 ~i~ 245 (363)
++.
T Consensus 164 ~v~ 166 (180)
T cd04127 164 NVE 166 (180)
T ss_pred CHH
Confidence 433
No 75
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.65 E-value=2.3e-15 Score=133.91 Aligned_cols=83 Identities=18% Similarity=0.161 Sum_probs=58.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceee-cceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTI-EPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~-~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.||+++|.+|||||||++.+++.......++.++. +.....+.+++.. .++++|||||......
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~ 65 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVK---------------VKLQIWDTAGQERFRS 65 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEE---------------EEEEEEeCCCcHHHHH
Confidence 48999999999999999999987665544443332 2222345565543 6799999999533211
Q ss_pred cccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 66 -------~~~~~~~~ad~~i~v~D~~ 84 (191)
T cd04112 66 -------VTHAYYRDAHALLLLYDIT 84 (191)
T ss_pred -------hhHHHccCCCEEEEEEECC
Confidence 2234568899999999984
No 76
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.65 E-value=1.6e-15 Score=130.40 Aligned_cols=83 Identities=24% Similarity=0.202 Sum_probs=59.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|++|||||||+++|++........|..+.+.....+.+++.. ..+++||+||......
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~l~D~~G~~~~~~- 64 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKR---------------VKLQIWDTAGQERFRS- 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEE---------------EEEEEEECcchHHHHH-
Confidence 589999999999999999999875544444444444444455555532 5789999999643322
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 65 ------~~~~~~~~~~~~i~v~d~~ 83 (161)
T cd04113 65 ------VTRSYYRGAAGALLVYDIT 83 (161)
T ss_pred ------hHHHHhcCCCEEEEEEECC
Confidence 2234568899999999985
No 77
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.65 E-value=5.5e-15 Score=127.65 Aligned_cols=83 Identities=17% Similarity=0.131 Sum_probs=54.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|.+|||||||++++.+........|..........+.+++.. ..+++|||||...+..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 64 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKT---------------ILVDFWDTAGQERFQT- 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEE---------------EEEEEEeCCCchhhhh-
Confidence 489999999999999999998764432222211111111223333322 6789999999654332
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 65 ------~~~~~~~~~d~~i~v~d~~ 83 (161)
T cd04124 65 ------MHASYYHKAHACILVFDVT 83 (161)
T ss_pred ------hhHHHhCCCCEEEEEEECC
Confidence 2234568999999999984
No 78
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.64 E-value=3.1e-15 Score=129.34 Aligned_cols=83 Identities=22% Similarity=0.183 Sum_probs=56.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|++|||||||++++.+........+..+.+.....+.+++.. ..+.+|||||.....
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~D~~G~~~~~-- 66 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKR---------------VKLQIWDTAGQERFR-- 66 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEE---------------EEEEEEECCChHHHH--
Confidence 689999999999999999998754332222222223333445555532 578999999954321
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
......++.+|++++|+|+.
T Consensus 67 -----~~~~~~~~~~d~~llv~d~~ 86 (165)
T cd01864 67 -----TITQSYYRSANGAIIAYDIT 86 (165)
T ss_pred -----HHHHHHhccCCEEEEEEECc
Confidence 12334568899999999984
No 79
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.64 E-value=9.2e-15 Score=126.09 Aligned_cols=89 Identities=28% Similarity=0.349 Sum_probs=68.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
+++|+++|.+|+|||||+|+|++.. ...++.|++|.......+...+ ..+.+|||||+....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~iiDtpG~~~~~ 64 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG-----------------KKYTLIDTAGIRRKG 64 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC-----------------eeEEEEECCCCcccc
Confidence 4789999999999999999999874 4567788888887777777766 568899999987654
Q ss_pred Ccccchh----hHHHhhccccCEEEEEEecc
Q psy2401 81 SKGEGLG----NKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 81 ~~~~~l~----~~~l~~~~~aD~il~Vvda~ 107 (363)
+....+. ...+..++.+|++++|+|+.
T Consensus 65 ~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~ 95 (174)
T cd01895 65 KVEEGIEKYSVLRTLKAIERADVVLLVIDAT 95 (174)
T ss_pred chhccHHHHHHHHHHHHHhhcCeEEEEEeCC
Confidence 3322221 23345678999999999985
No 80
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.64 E-value=4.2e-15 Score=150.18 Aligned_cols=184 Identities=18% Similarity=0.223 Sum_probs=121.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
++|+++|+||||||||+|+|++.. ..++++|++|.++....+.+++ .++.+|||||+.+...
T Consensus 212 ~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~-----------------~~~~l~DTaG~~~~~~ 274 (472)
T PRK03003 212 RRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG-----------------KTWRFVDTAGLRRRVK 274 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC-----------------EEEEEEECCCcccccc
Confidence 689999999999999999999984 4688999999999988888887 5678999999865332
Q ss_pred cccch--hh--HHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCch
Q psy2401 82 KGEGL--GN--KFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEH 157 (363)
Q Consensus 82 ~~~~l--~~--~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~ 157 (363)
...+. .. .....++.+|++++|+|+++... .
T Consensus 275 ~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s------------~--------------------------------- 309 (472)
T PRK03003 275 QASGHEYYASLRTHAAIEAAEVAVVLIDASEPIS------------E--------------------------------- 309 (472)
T ss_pred ccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCC------------H---------------------------------
Confidence 21111 01 11245689999999999953210 0
Q ss_pred hHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchH---HHHHHHHHHhc-CCCcE
Q psy2401 158 SIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNL---LLDQLKIYAHN-QNIPI 233 (363)
Q Consensus 158 ~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~---~~~~i~~~~~~-~~~~~ 233 (363)
.+...+..+ ....+|+++|+||.|+.. .+. ..+.+.+.+.. ...++
T Consensus 310 ----------------------------~~~~~~~~~-~~~~~piIiV~NK~Dl~~-~~~~~~~~~~i~~~l~~~~~~~~ 359 (472)
T PRK03003 310 ----------------------------QDQRVLSMV-IEAGRALVLAFNKWDLVD-EDRRYYLEREIDRELAQVPWAPR 359 (472)
T ss_pred ----------------------------HHHHHHHHH-HHcCCCEEEEEECcccCC-hhHHHHHHHHHHHhcccCCCCCE
Confidence 000001101 114689999999999631 111 12233333322 23688
Q ss_pred EEeeHHHHHHHhcCCHHHHHHHHh-hcCCCchhHHHHHHHHHHhCC
Q psy2401 234 IIICAKLEEEISDLNNIDKKFFLD-NLGLKETKLNDLIRASFSLLD 278 (363)
Q Consensus 234 i~~sa~~e~~i~el~~~~~~~~l~-~~~l~~~~l~~l~~~~~~~l~ 278 (363)
+++||+...++.++.+...+.+-. ..-++.+.|++.++.+...-.
T Consensus 360 ~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~~~~~~~~~ 405 (472)
T PRK03003 360 VNISAKTGRAVDKLVPALETALESWDTRIPTGRLNAWLGELVAATP 405 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCC
Confidence 999999999988876544433211 124456778888887775543
No 81
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.63 E-value=5.4e-15 Score=147.66 Aligned_cols=181 Identities=24% Similarity=0.292 Sum_probs=119.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.+++++|.+|+|||||+|+|++.. ..+++.|++|.++....+.+++ ..+.+|||||+.+...
T Consensus 173 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~-----------------~~~~liDT~G~~~~~~ 235 (429)
T TIGR03594 173 IKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG-----------------KKYLLIDTAGIRRKGK 235 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC-----------------cEEEEEECCCcccccc
Confidence 689999999999999999999874 5678999999999888888877 5689999999976554
Q ss_pred cccchh----hHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCch
Q psy2401 82 KGEGLG----NKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEH 157 (363)
Q Consensus 82 ~~~~l~----~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~ 157 (363)
....+. .+.+..++.+|++++|+|+.++ ..
T Consensus 236 ~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~------------~~---------------------------------- 269 (429)
T TIGR03594 236 VTEGVEKYSVLRTLKAIERADVVLLVLDATEG------------IT---------------------------------- 269 (429)
T ss_pred chhhHHHHHHHHHHHHHHhCCEEEEEEECCCC------------cc----------------------------------
Confidence 332221 2345678999999999998532 10
Q ss_pred hHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHh----c-CCCc
Q psy2401 158 SIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAH----N-QNIP 232 (363)
Q Consensus 158 ~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~----~-~~~~ 232 (363)
..+...++.. ....+|+++++||.|.. ...+..+.+.+.+. . ...+
T Consensus 270 ---------------------------~~~~~~~~~~-~~~~~~iiiv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~ 320 (429)
T TIGR03594 270 ---------------------------EQDLRIAGLI-LEAGKALVIVVNKWDLV-KDEKTREEFKKELRRKLPFLDFAP 320 (429)
T ss_pred ---------------------------HHHHHHHHHH-HHcCCcEEEEEECcccC-CCHHHHHHHHHHHHHhcccCCCCc
Confidence 0000011101 11468999999999964 12333333433332 2 2468
Q ss_pred EEEeeHHHHHHHhcCCHHHHHHHHh-hcCCCchhHHHHHHHHHH
Q psy2401 233 IIIICAKLEEEISDLNNIDKKFFLD-NLGLKETKLNDLIRASFS 275 (363)
Q Consensus 233 ~i~~sa~~e~~i~el~~~~~~~~l~-~~~l~~~~l~~l~~~~~~ 275 (363)
++++||+...++.++.+...+.|-. ...++...+.+.++.+..
T Consensus 321 vi~~SA~~g~~v~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~ 364 (429)
T TIGR03594 321 IVFISALTGQGVDKLLDAIDEVYENANRRISTSKLNRVLEEAVA 364 (429)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 9999999988887775544333221 122344566777775543
No 82
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.63 E-value=6.1e-15 Score=126.68 Aligned_cols=83 Identities=22% Similarity=0.142 Sum_probs=55.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeC--CccccccccccccccccceeEEEEeeecccCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVP--DKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~--~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
+||+++|.+|+|||||++++++........|....+.....+.+. +.. ..+++|||||.....
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~ 65 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDED---------------VRLMLWDTAGQEEFD 65 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCE---------------EEEEEeeCCchHHHH
Confidence 589999999999999999999864433323333333323334443 221 679999999964322
Q ss_pred CcccchhhHHHhhccccCEEEEEEecc
Q psy2401 81 SKGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 81 ~~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. .....++.+|++++|+|+.
T Consensus 66 ~-------~~~~~~~~~~~~v~v~d~~ 85 (162)
T cd04106 66 A-------ITKAYYRGAQACILVFSTT 85 (162)
T ss_pred H-------hHHHHhcCCCEEEEEEECC
Confidence 1 2334568999999999984
No 83
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.63 E-value=6.1e-15 Score=127.82 Aligned_cols=83 Identities=24% Similarity=0.208 Sum_probs=57.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|++|||||||++++++........+..+.++....+.+++.. .++++||+||......
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~~~- 64 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKL---------------VTLQIWDTAGQERFQS- 64 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEE---------------EEEEEEeCCChHHHHh-
Confidence 489999999999999999999875433322322323333345555532 6788999999643222
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 65 ------~~~~~~~~~d~~i~v~d~~ 83 (172)
T cd01862 65 ------LGVAFYRGADCCVLVYDVT 83 (172)
T ss_pred ------HHHHHhcCCCEEEEEEECC
Confidence 2235568899999999984
No 84
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.63 E-value=3.2e-15 Score=151.01 Aligned_cols=89 Identities=24% Similarity=0.257 Sum_probs=71.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.+|+|+|.||||||||+|+|++.. +.+++.|++|.+...+.+.+.+ ..+.+|||||+.....
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~-----------------~~~~l~DT~G~~~~~~ 101 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG-----------------RRFTVVDTGGWEPDAK 101 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC-----------------cEEEEEeCCCcCCcch
Confidence 589999999999999999999874 5678999999998888888887 5689999999863222
Q ss_pred c-ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 82 K-GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 82 ~-~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
. ...+..+...+++.||++|+|+|++.
T Consensus 102 ~~~~~~~~~~~~~~~~aD~il~VvD~~~ 129 (472)
T PRK03003 102 GLQASVAEQAEVAMRTADAVLFVVDATV 129 (472)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 1 11233345567889999999999953
No 85
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.63 E-value=6.9e-15 Score=126.48 Aligned_cols=83 Identities=22% Similarity=0.129 Sum_probs=56.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|++|||||||+|++++........|..........+.+++.. ..+.+||+||..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~---------------~~~~i~D~~G~~~~~~- 65 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTT---------------VKFEIWDTAGQERYRS- 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEeCCchHHHHH-
Confidence 689999999999999999999875443222322222223345555532 6789999999543221
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 66 ------~~~~~~~~~~~~i~v~d~~ 84 (163)
T cd01860 66 ------LAPMYYRGAAAAIVVYDIT 84 (163)
T ss_pred ------HHHHHhccCCEEEEEEECc
Confidence 1223568899999999984
No 86
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.63 E-value=2.8e-15 Score=133.49 Aligned_cols=153 Identities=20% Similarity=0.161 Sum_probs=99.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.+|||||||+.++..........|..+.+...-.+.+++.. ..+++|||||......
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~---------------~~l~iwDt~G~~~~~~- 70 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRR---------------VKLQLWDTSGQGRFCT- 70 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEE---------------EEEEEEeCCCcHHHHH-
Confidence 689999999999999999999754332111222333333445555543 6799999999754332
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
.....++.+|++++|+|.+..
T Consensus 71 ------l~~~~~~~ad~illVfD~t~~----------------------------------------------------- 91 (189)
T cd04121 71 ------IFRSYSRGAQGIILVYDITNR----------------------------------------------------- 91 (189)
T ss_pred ------HHHHHhcCCCEEEEEEECcCH-----------------------------------------------------
Confidence 223456899999999998531
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
..++.++.|+++ +... ....|+++++||.|+........+.+++++...+.+++.+||+...
T Consensus 92 ~Sf~~~~~w~~~----------------i~~~--~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~ 153 (189)
T cd04121 92 WSFDGIDRWIKE----------------IDEH--APGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNF 153 (189)
T ss_pred HHHHHHHHHHHH----------------HHHh--CCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCC
Confidence 223333334331 1111 1357999999999964211223556778887788899999999665
Q ss_pred HHhcCC
Q psy2401 243 EISDLN 248 (363)
Q Consensus 243 ~i~el~ 248 (363)
++.++.
T Consensus 154 ~V~~~F 159 (189)
T cd04121 154 NITESF 159 (189)
T ss_pred CHHHHH
Confidence 555543
No 87
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.63 E-value=3.6e-15 Score=134.13 Aligned_cols=163 Identities=17% Similarity=0.116 Sum_probs=102.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|.+|||||||++.+..........|..+.+.....+.+++.. ..+++|||+|...+..
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~---------------v~l~iwDtaGqe~~~~- 64 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKK---------------IRLQIWDTAGQERFNS- 64 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEE---------------EEEEEEeCCCchhhHH-
Confidence 479999999999999999998765443223333344444556776643 6899999999754332
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
.....++++|++++|+|+++.
T Consensus 65 ------l~~~y~~~ad~iIlVfDvtd~----------------------------------------------------- 85 (202)
T cd04120 65 ------ITSAYYRSAKGIILVYDITKK----------------------------------------------------- 85 (202)
T ss_pred ------HHHHHhcCCCEEEEEEECcCH-----------------------------------------------------
Confidence 223556899999999998531
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcC-CCcEEEeeHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQ-NIPIIIICAKLE 241 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~-~~~~i~~sa~~e 241 (363)
+.++.+..|+. .++.. .....|+++++||.|+........+..++++.+. +..++.+||+..
T Consensus 86 ~Sf~~l~~w~~----------------~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg 148 (202)
T cd04120 86 ETFDDLPKWMK----------------MIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDN 148 (202)
T ss_pred HHHHHHHHHHH----------------HHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCC
Confidence 12222222222 11111 1245799999999996421122233445555543 678999999977
Q ss_pred HHHhcCCHHHHHHHHh
Q psy2401 242 EEISDLNNIDKKFFLD 257 (363)
Q Consensus 242 ~~i~el~~~~~~~~l~ 257 (363)
.++.++........+.
T Consensus 149 ~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 149 FNVDEIFLKLVDDILK 164 (202)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7766665444444333
No 88
>PLN03118 Rab family protein; Provisional
Probab=99.63 E-value=5.4e-15 Score=133.65 Aligned_cols=83 Identities=24% Similarity=0.235 Sum_probs=56.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.+||+++|++|||||||+++|++.... ...|..+.+.....+.+++.. ..+.+|||||...+..
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~~~~~ 77 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKR---------------LKLTIWDTAGQERFRT 77 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEE---------------EEEEEEECCCchhhHH
Confidence 379999999999999999999986432 112222222223344555432 5789999999754432
Q ss_pred cccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 78 -------~~~~~~~~~d~~vlv~D~~ 96 (211)
T PLN03118 78 -------LTSSYYRNAQGIILVYDVT 96 (211)
T ss_pred -------HHHHHHhcCCEEEEEEECC
Confidence 2234568899999999985
No 89
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.62 E-value=8e-15 Score=125.43 Aligned_cols=83 Identities=22% Similarity=0.193 Sum_probs=56.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|++|+|||||+|++.+........+.++.......+.+.+.. ..+.+||+||......
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~~~- 64 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKR---------------IDLAIWDTAGQERYHA- 64 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEE---------------EEEEEEECCchHHHHH-
Confidence 489999999999999999999865443333333333333445544422 5789999999643222
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+.. ..++.+|++++|+|++
T Consensus 65 ---~~~---~~~~~~~~~i~v~d~~ 83 (162)
T cd04123 65 ---LGP---IYYRDADGAILVYDIT 83 (162)
T ss_pred ---hhH---HHhccCCEEEEEEECC
Confidence 112 2347899999999985
No 90
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.62 E-value=2.9e-15 Score=130.50 Aligned_cols=77 Identities=21% Similarity=0.268 Sum_probs=56.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKG 83 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 83 (363)
||+++|.+|||||||++++++.... . +..|..+....+.+.+ .++.+|||||......
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~--~~~T~~~~~~~~~~~~-----------------~~i~l~Dt~G~~~~~~-- 58 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-Q--PIPTIGFNVETVEYKN-----------------LKFTIWDVGGKHKLRP-- 58 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-C--cCCcCceeEEEEEECC-----------------EEEEEEECCCChhcch--
Confidence 6899999999999999999986321 2 2334445555555544 7899999999754322
Q ss_pred cchhhHHHhhccccCEEEEEEecc
Q psy2401 84 EGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 84 ~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 59 -----~~~~~~~~ad~ii~V~D~s 77 (169)
T cd04158 59 -----LWKHYYLNTQAVVFVVDSS 77 (169)
T ss_pred -----HHHHHhccCCEEEEEEeCC
Confidence 3345668999999999985
No 91
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.62 E-value=9.6e-15 Score=146.18 Aligned_cols=180 Identities=22% Similarity=0.274 Sum_probs=117.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC-CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL-KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~-~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.+|+++|+||+|||||+|+|++. ...+++.|++|.+.....+.+.+ ..+.+|||||+.+..+
T Consensus 174 ~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-----------------~~~~lvDT~G~~~~~~ 236 (435)
T PRK00093 174 IKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG-----------------QKYTLIDTAGIRRKGK 236 (435)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC-----------------eeEEEEECCCCCCCcc
Confidence 68999999999999999999987 46788999999988777777766 5689999999876554
Q ss_pred cccchh----hHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCch
Q psy2401 82 KGEGLG----NKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEH 157 (363)
Q Consensus 82 ~~~~l~----~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~ 157 (363)
....+. ...+..++.+|++++|+|+..+. .
T Consensus 237 ~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~------------~---------------------------------- 270 (435)
T PRK00093 237 VTEGVEKYSVIRTLKAIERADVVLLVIDATEGI------------T---------------------------------- 270 (435)
T ss_pred hhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCC------------C----------------------------------
Confidence 433221 23456788999999999995321 0
Q ss_pred hHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHh----c-CCCc
Q psy2401 158 SIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAH----N-QNIP 232 (363)
Q Consensus 158 ~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~----~-~~~~ 232 (363)
..+...+. +.....+|+++++||.|.. ..+..+.+.+.+. . ...+
T Consensus 271 ---------------------------~~~~~i~~-~~~~~~~~~ivv~NK~Dl~--~~~~~~~~~~~~~~~l~~~~~~~ 320 (435)
T PRK00093 271 ---------------------------EQDLRIAG-LALEAGRALVIVVNKWDLV--DEKTMEEFKKELRRRLPFLDYAP 320 (435)
T ss_pred ---------------------------HHHHHHHH-HHHHcCCcEEEEEECccCC--CHHHHHHHHHHHHHhcccccCCC
Confidence 00000010 1011468999999999964 2222333332222 1 2468
Q ss_pred EEEeeHHHHHHHhcCCHHHHHHHHhh-cCCCchhHHHHHHHHHH
Q psy2401 233 IIIICAKLEEEISDLNNIDKKFFLDN-LGLKETKLNDLIRASFS 275 (363)
Q Consensus 233 ~i~~sa~~e~~i~el~~~~~~~~l~~-~~l~~~~l~~l~~~~~~ 275 (363)
++++||+...++.++.+...+-|-+. .-+....+.+.++.+..
T Consensus 321 i~~~SA~~~~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~ 364 (435)
T PRK00093 321 IVFISALTGQGVDKLLEAIDEAYENANRRISTSVLNRVLEEAVE 364 (435)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHHH
Confidence 99999998888877654433222111 12334566777775543
No 92
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=6.8e-15 Score=129.29 Aligned_cols=86 Identities=30% Similarity=0.291 Sum_probs=65.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC--ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK--ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~--~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
.-|+++|++|||||||+|+|++++ +++|..||.|..++.-. +.+ .+.++|+||+.--.
T Consensus 25 ~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~--~~~------------------~~~lVDlPGYGyAk 84 (200)
T COG0218 25 PEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFE--VDD------------------ELRLVDLPGYGYAK 84 (200)
T ss_pred cEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEE--ecC------------------cEEEEeCCCccccc
Confidence 469999999999999999999986 89999999999988544 333 37899999986321
Q ss_pred ------CcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 81 ------SKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 81 ------~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
..+..+..+++..-.+-.++++++|+.+
T Consensus 85 v~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~ 118 (200)
T COG0218 85 VPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARH 118 (200)
T ss_pred CCHHHHHHHHHHHHHHHhhchhheEEEEEEECCC
Confidence 1122333455555455788999999854
No 93
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.62 E-value=8.9e-15 Score=123.96 Aligned_cols=83 Identities=22% Similarity=0.165 Sum_probs=59.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|++|||||||+|++++........|..+.+.....+..++.. ..+.+||+||.....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~D~~g~~~~~-- 63 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKT---------------VKLQIWDTAGQERFR-- 63 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEE---------------EEEEEEecCChHHHH--
Confidence 489999999999999999999876665555544444444445544322 678999999974322
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
......++++|++++|+|+.
T Consensus 64 -----~~~~~~~~~~d~ii~v~d~~ 83 (159)
T cd00154 64 -----SITPSYYRGAHGAILVYDIT 83 (159)
T ss_pred -----HHHHHHhcCCCEEEEEEECC
Confidence 23345568899999999985
No 94
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.62 E-value=5.9e-15 Score=147.71 Aligned_cols=89 Identities=26% Similarity=0.323 Sum_probs=72.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.+|+++|.||||||||+|+|++.. +.++++|++|.+...+.+.+.+ ..+.+|||||+.....
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~-----------------~~~~liDT~G~~~~~~ 64 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG-----------------REFILIDTGGIEPDDD 64 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC-----------------cEEEEEECCCCCCcch
Confidence 689999999999999999999984 4688999999999999999988 6799999999976222
Q ss_pred -cccchhhHHHhhccccCEEEEEEeccc
Q psy2401 82 -KGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 82 -~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
....+..+...+++.+|++++|+|+.+
T Consensus 65 ~~~~~~~~~~~~~~~~ad~il~vvd~~~ 92 (435)
T PRK00093 65 GFEKQIREQAELAIEEADVILFVVDGRA 92 (435)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 112233455677899999999999853
No 95
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.61 E-value=1.4e-14 Score=125.16 Aligned_cols=83 Identities=20% Similarity=0.193 Sum_probs=57.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|++|||||||++.+++........|....+.....+.+++.+ ..+++||+||......
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~D~~g~~~~~~- 64 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIK---------------VRIQIWDTAGQERYQT- 64 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEE---------------EEEEEEeCCCcHhHHh-
Confidence 489999999999999999999765543333433323333445555533 6789999999654322
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|..
T Consensus 65 ------~~~~~~~~~~~~i~v~d~~ 83 (161)
T cd04117 65 ------ITKQYYRRAQGIFLVYDIS 83 (161)
T ss_pred ------hHHHHhcCCcEEEEEEECC
Confidence 2234568999999999984
No 96
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.61 E-value=1.2e-14 Score=126.60 Aligned_cols=84 Identities=20% Similarity=0.190 Sum_probs=57.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.+|+++|++|||||||++++++........|....+.....+.+++.. ..+++|||||..+...
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 66 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGER---------------IKVQLWDTAGQERFRK- 66 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeE---------------EEEEEEeCCChHHHHH-
Confidence 689999999999999999999765433333333333344455565533 6789999999643221
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. .....++++|++++|+|+.
T Consensus 67 --~---~~~~~~~~~d~~i~v~d~~ 86 (170)
T cd04115 67 --S---MVQHYYRNVHAVVFVYDVT 86 (170)
T ss_pred --h---hHHHhhcCCCEEEEEEECC
Confidence 0 1223458899999999985
No 97
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.61 E-value=8e-15 Score=130.32 Aligned_cols=81 Identities=22% Similarity=0.162 Sum_probs=55.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKG 83 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 83 (363)
||+++|.+|||||||++++++.... ..++.++.......+.+++.. ..+++|||||......
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~-~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~-- 62 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV-ETYDPTIEDSYRKQVVVDGQP---------------CMLEVLDTAGQEEYTA-- 62 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchHhhEEEEEEECCEE---------------EEEEEEECCCchhhHH--
Confidence 6899999999999999999875432 334444433333344555532 5689999999644332
Q ss_pred cchhhHHHhhccccCEEEEEEecc
Q psy2401 84 EGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 84 ~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 63 -----~~~~~~~~ad~~ilv~d~~ 81 (190)
T cd04144 63 -----LRDQWIREGEGFILVYSIT 81 (190)
T ss_pred -----HHHHHHHhCCEEEEEEECC
Confidence 2224568899999999984
No 98
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.61 E-value=1.4e-14 Score=124.29 Aligned_cols=82 Identities=18% Similarity=0.126 Sum_probs=55.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|++|||||||+++++..... ..+.+++.+.......+++.. ..+.+||+||......
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~~~~- 63 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVLDGED---------------VQLNILDTAGQEDYAA- 63 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc-cccCCcchhhEEEEEEECCEE---------------EEEEEEECCChhhhhH-
Confidence 48999999999999999999975332 344444433333334444432 5789999999754322
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 64 ------~~~~~~~~~~~~i~v~d~~ 82 (164)
T cd04139 64 ------IRDNYHRSGEGFLLVFSIT 82 (164)
T ss_pred ------HHHHHhhcCCEEEEEEECC
Confidence 2224558889999999974
No 99
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.61 E-value=1.4e-14 Score=125.86 Aligned_cols=83 Identities=23% Similarity=0.171 Sum_probs=58.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.+|||||||++++++........|..+.+.....+.+++.. ..+++||+||......
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~i~D~~G~~~~~~- 69 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHF---------------VTLQIWDTAGQERFRS- 69 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeE---------------EEEEEEeCCChHHHHH-
Confidence 689999999999999999999765544444433333333445555543 6789999999643222
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|..
T Consensus 70 ------~~~~~~~~~d~~i~v~d~~ 88 (170)
T cd04116 70 ------LRTPFYRGSDCCLLTFAVD 88 (170)
T ss_pred ------hHHHHhcCCCEEEEEEECC
Confidence 2224568899999999984
No 100
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.61 E-value=1.1e-14 Score=125.94 Aligned_cols=82 Identities=17% Similarity=0.216 Sum_probs=56.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKG 83 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 83 (363)
||+++|++|||||||++++..... ...++.++.......+.+++.. ..+++|||||......
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~~~~-- 62 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF-IGEYDPNLESLYSRQVTIDGEQ---------------VSLEILDTAGQQQADT-- 62 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc-ccccCCChHHhceEEEEECCEE---------------EEEEEEECCCCccccc--
Confidence 689999999999999999986433 3445544433333445555532 5789999999764211
Q ss_pred cchhhHHHhhccccCEEEEEEecc
Q psy2401 84 EGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 84 ~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
......++.+|++++|+|+.
T Consensus 63 ----~~~~~~~~~~d~~i~v~d~~ 82 (165)
T cd04146 63 ----EQLERSIRWADGFVLVYSIT 82 (165)
T ss_pred ----chHHHHHHhCCEEEEEEECC
Confidence 12334568899999999985
No 101
>PRK00007 elongation factor G; Reviewed
Probab=99.61 E-value=7.9e-15 Score=154.42 Aligned_cols=226 Identities=16% Similarity=0.121 Sum_probs=153.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHH---cCCcc---cc------------CCCceeecceeEEEEeCCcccccccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALT---KLKIS---AE------------NYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIF 64 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt---~~~~~---~~------------~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~ 64 (363)
++|+|+|++|+|||||+++|+ |..-. +. ..+++|++.....+.+.+
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~---------------- 74 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD---------------- 74 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC----------------
Confidence 489999999999999999996 32111 22 246788888888888877
Q ss_pred ceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHh-h
Q psy2401 65 PAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEK-Y 143 (363)
Q Consensus 65 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~-~ 143 (363)
.+++++||||+.++ ..+....++.+|++++|+|+..+. ..+++..+..+....+ +
T Consensus 75 -~~~~liDTPG~~~f-------~~ev~~al~~~D~~vlVvda~~g~----------------~~qt~~~~~~~~~~~~p~ 130 (693)
T PRK00007 75 -HRINIIDTPGHVDF-------TIEVERSLRVLDGAVAVFDAVGGV----------------EPQSETVWRQADKYKVPR 130 (693)
T ss_pred -eEEEEEeCCCcHHH-------HHHHHHHHHHcCEEEEEEECCCCc----------------chhhHHHHHHHHHcCCCE
Confidence 78999999997643 235677889999999999986542 1123445555555555 4
Q ss_pred hhhhhcccccCCchhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhh-cccccccEEEecc----ccccCCCchHH
Q psy2401 144 IDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFL-NLLTIKPIIFVAN----VKENGFKNNLL 218 (363)
Q Consensus 144 ~~~i~k~~~~g~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~-~~l~~kp~i~v~N----k~d~~~~~~~~ 218 (363)
+..+||+++.+ .+....++++++.+........+|++... .+.++ +++..+..++-.. +......+...
T Consensus 131 iv~vNK~D~~~----~~~~~~~~~i~~~l~~~~~~~~ipisa~~--~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (693)
T PRK00007 131 IAFVNKMDRTG----ADFYRVVEQIKDRLGANPVPIQLPIGAED--DFKGVVDLVKMKAIIWNEADLGATFEYEEIPADL 204 (693)
T ss_pred EEEEECCCCCC----CCHHHHHHHHHHHhCCCeeeEEecCccCC--cceEEEEcceeeeeecccCCCCCcceEccCCHHH
Confidence 67899996543 22456778888888764444455666443 33333 4444444444210 00100013334
Q ss_pred HHHHHHHHhcCCCcEEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeC
Q psy2401 219 LDQLKIYAHNQNIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTV 285 (363)
Q Consensus 219 ~~~i~~~~~~~~~~~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~ 285 (363)
.+.+.++ ..++-+.+++.+++++++||++..++.+.+...+++......++|+|-.
T Consensus 205 ~~~~~~~-----------~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~~l~~~~~~~~~~Pv~~g 260 (693)
T PRK00007 205 KDKAEEY-----------REKLIEAAAEADEELMEKYLEGEELTEEEIKAALRKATIANEIVPVLCG 260 (693)
T ss_pred HHHHHHH-----------HHHHHHHHHccCHHHHHHHhCcCCCCHHHHHHHHHHHHhcCcEEEEEec
Confidence 4444444 4457788899999999999999889999999999988889999999954
No 102
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.60 E-value=1e-14 Score=129.21 Aligned_cols=79 Identities=19% Similarity=0.316 Sum_probs=59.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
..+|+++|++|||||||++++++.... . ...|..+..+.+.+++ ..+.+||+||.....
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~-~--~~~T~~~~~~~i~~~~-----------------~~~~l~D~~G~~~~~- 77 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLA-Q--HVPTLHPTSEELTIGN-----------------IKFKTFDLGGHEQAR- 77 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCc-c--cCCccCcceEEEEECC-----------------EEEEEEECCCCHHHH-
Confidence 368999999999999999999986432 1 2236667777888776 678999999964321
Q ss_pred cccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
......++.+|++++|+|++
T Consensus 78 ------~~~~~~~~~ad~iilV~D~~ 97 (190)
T cd00879 78 ------RLWKDYFPEVDGIVFLVDAA 97 (190)
T ss_pred ------HHHHHHhccCCEEEEEEECC
Confidence 13345668999999999985
No 103
>PLN03108 Rab family protein; Provisional
Probab=99.60 E-value=6.8e-15 Score=133.05 Aligned_cols=153 Identities=16% Similarity=0.158 Sum_probs=97.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|++|||||||++++++........|....+...+.+.+++.. ..+++|||||......
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~---------------i~l~l~Dt~G~~~~~~- 70 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKP---------------IKLQIWDTAGQESFRS- 70 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEE---------------EEEEEEeCCCcHHHHH-
Confidence 589999999999999999999875554444443444445566776643 5688999999653221
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
.....++.+|++++|+|+...
T Consensus 71 ------~~~~~~~~ad~~vlv~D~~~~----------------------------------------------------- 91 (210)
T PLN03108 71 ------ITRSYYRGAAGALLVYDITRR----------------------------------------------------- 91 (210)
T ss_pred ------HHHHHhccCCEEEEEEECCcH-----------------------------------------------------
Confidence 334556889999999998421
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
..++.+.+|+.. +... .....|+++++||.|.........+..++++..++.+++.+||+...
T Consensus 92 ~s~~~l~~~~~~----------------~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 154 (210)
T PLN03108 92 ETFNHLASWLED----------------ARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ 154 (210)
T ss_pred HHHHHHHHHHHH----------------HHHh-cCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 111112222210 0001 11467999999999964211223455666667778899999998655
Q ss_pred HHhcC
Q psy2401 243 EISDL 247 (363)
Q Consensus 243 ~i~el 247 (363)
++.++
T Consensus 155 ~v~e~ 159 (210)
T PLN03108 155 NVEEA 159 (210)
T ss_pred CHHHH
Confidence 55443
No 104
>KOG1191|consensus
Probab=99.60 E-value=2.3e-15 Score=146.63 Aligned_cols=89 Identities=27% Similarity=0.411 Sum_probs=76.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcC-CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccC-C
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKL-KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVS-G 79 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~-~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~-~ 79 (363)
+++|+|+|+||+|||||+|+|++. .+.+++.||||.+.....++++| .++.++||+|+-+ .
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G-----------------~~v~L~DTAGiRe~~ 330 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG-----------------VPVRLSDTAGIREES 330 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC-----------------eEEEEEecccccccc
Confidence 578999999999999999999998 57799999999999999999999 8899999999987 2
Q ss_pred CCcccchh-hHHHhhccccCEEEEEEecc
Q psy2401 80 ASKGEGLG-NKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 80 ~~~~~~l~-~~~l~~~~~aD~il~Vvda~ 107 (363)
...-+.++ ++....++.+|++++|+|+-
T Consensus 331 ~~~iE~~gI~rA~k~~~~advi~~vvda~ 359 (531)
T KOG1191|consen 331 NDGIEALGIERARKRIERADVILLVVDAE 359 (531)
T ss_pred CChhHHHhHHHHHHHHhhcCEEEEEeccc
Confidence 22223332 46677889999999999993
No 105
>PRK12739 elongation factor G; Reviewed
Probab=99.60 E-value=8e-15 Score=154.45 Aligned_cols=226 Identities=15% Similarity=0.135 Sum_probs=150.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC---c---ccc------------CCCceeecceeEEEEeCCcccccccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK---I---SAE------------NYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIF 64 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~---~---~~~------------~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~ 64 (363)
++|+|+|++|+|||||+++|+... . .+. ..+++|++.....+.+++
T Consensus 9 rni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~---------------- 72 (691)
T PRK12739 9 RNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG---------------- 72 (691)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC----------------
Confidence 589999999999999999996421 1 112 146788888888888877
Q ss_pred ceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHh-h
Q psy2401 65 PAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEK-Y 143 (363)
Q Consensus 65 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~-~ 143 (363)
.+++++||||+.+ +.......++.+|++++|+|+.++. ..+++.++..+....+ .
T Consensus 73 -~~i~liDTPG~~~-------f~~e~~~al~~~D~~ilVvDa~~g~----------------~~qt~~i~~~~~~~~~p~ 128 (691)
T PRK12739 73 -HRINIIDTPGHVD-------FTIEVERSLRVLDGAVAVFDAVSGV----------------EPQSETVWRQADKYGVPR 128 (691)
T ss_pred -EEEEEEcCCCHHH-------HHHHHHHHHHHhCeEEEEEeCCCCC----------------CHHHHHHHHHHHHcCCCE
Confidence 7899999999864 2336778889999999999996532 1223444555544444 4
Q ss_pred hhhhhcccccCCchhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhh-cccccccEEEecc----ccccCCCchHH
Q psy2401 144 IDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFL-NLLTIKPIIFVAN----VKENGFKNNLL 218 (363)
Q Consensus 144 ~~~i~k~~~~g~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~-~~l~~kp~i~v~N----k~d~~~~~~~~ 218 (363)
+..+||+++.+. +....++++++.+........+|++... .+.+. ++...+..++-.+ +.+....+...
T Consensus 129 iv~iNK~D~~~~----~~~~~~~~i~~~l~~~~~~~~iPis~~~--~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (691)
T PRK12739 129 IVFVNKMDRIGA----DFFRSVEQIKDRLGANAVPIQLPIGAED--DFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADL 202 (691)
T ss_pred EEEEECCCCCCC----CHHHHHHHHHHHhCCCceeEEecccccc--cceEEEEcchhhhhhccCCCCCCeeEEcCCCHHH
Confidence 678999965432 2456778888877754444455665443 23322 3333333322111 01110013333
Q ss_pred HHHHHHHHhcCCCcEEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeC
Q psy2401 219 LDQLKIYAHNQNIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTV 285 (363)
Q Consensus 219 ~~~i~~~~~~~~~~~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~ 285 (363)
.+.+.++ .-++-+.+++.+++++++||++.+++.+.+...+++......++|+|-.
T Consensus 203 ~~~~~~~-----------~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~g 258 (691)
T PRK12739 203 KEKAEEY-----------REKLIEAVAEVDEELMEKYLEGEEITEEEIKAAIRKATINMEFFPVLCG 258 (691)
T ss_pred HHHHHHH-----------HHHHHHhhhhcCHHHHHHHhccCCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 4444443 4457778889999999999999999999999999999999999999854
No 106
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.60 E-value=2.1e-14 Score=127.14 Aligned_cols=83 Identities=20% Similarity=0.160 Sum_probs=57.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|.+|||||||++++++........|..+.+.....+.+++.. ..+.+|||||......
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~g~~~~~~- 64 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKI---------------IKLQIWDTNGQERFRS- 64 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEE---------------EEEEEEECCCcHHHHh-
Confidence 489999999999999999999865543233333333333445555532 6789999999643221
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 65 ------~~~~~~~~~d~iilv~d~~ 83 (188)
T cd04125 65 ------LNNSYYRGAHGYLLVYDVT 83 (188)
T ss_pred ------hHHHHccCCCEEEEEEECc
Confidence 2345568999999999984
No 107
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.60 E-value=2.4e-14 Score=124.29 Aligned_cols=82 Identities=18% Similarity=0.202 Sum_probs=55.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.||||||||++++.+.... ..++.++.......+.+++.. ..+++|||||...+..
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 64 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI-ESYDPTIEDSYRKQVEIDGRQ---------------CDLEILDTAGTEQFTA- 64 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcchheEEEEEEECCEE---------------EEEEEEeCCCcccchh-
Confidence 68999999999999999999975432 223323322223334454432 5789999999765433
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+.+ ..++.+|++++|+|..
T Consensus 65 ---~~~---~~~~~~~~~vlv~~~~ 83 (168)
T cd04177 65 ---MRE---LYIKSGQGFLLVYSVT 83 (168)
T ss_pred ---hhH---HHHhhCCEEEEEEECC
Confidence 222 3347799999999984
No 108
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.60 E-value=1.8e-14 Score=130.40 Aligned_cols=83 Identities=24% Similarity=0.225 Sum_probs=56.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeC-CccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVP-DKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~-~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
+||+++|.+|||||||++.+++........|..+.+.....+.+. +.. ..+++|||||......
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~---------------~~l~i~Dt~G~~~~~~ 67 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVR---------------IKLQLWDTAGQERFRS 67 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCE---------------EEEEEEeCCcchhHHH
Confidence 699999999999999999999865433333433333333334443 221 6799999999643221
Q ss_pred cccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++++|++++|+|.+
T Consensus 68 -------~~~~~~~~~d~iilv~D~~ 86 (211)
T cd04111 68 -------ITRSYYRNSVGVLLVFDIT 86 (211)
T ss_pred -------HHHHHhcCCcEEEEEEECC
Confidence 2234568899999999984
No 109
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.60 E-value=2.4e-14 Score=130.54 Aligned_cols=168 Identities=15% Similarity=0.150 Sum_probs=100.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceee-cceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTI-EPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~-~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.||+++|.+|||||||++++++.......++.+.. +.....+.+++.. ..+.+|||||...
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~---------------~~l~i~Dt~G~~~--- 62 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEE---------------STLVVIDHWEQEM--- 62 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEE---------------EEEEEEeCCCcch---
Confidence 48999999999999999999765443223322211 2333445555532 6799999999751
Q ss_pred cccchhhHHHhhcc-ccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHH
Q psy2401 82 KGEGLGNKFLAHIR-ETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIE 160 (363)
Q Consensus 82 ~~~~l~~~~l~~~~-~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~ 160 (363)
.+... .++ .+|++++|+|+.+..
T Consensus 63 ---~~~~~---~~~~~ad~iilV~d~td~~-------------------------------------------------- 86 (221)
T cd04148 63 ---WTEDS---CMQYQGDAFVVVYSVTDRS-------------------------------------------------- 86 (221)
T ss_pred ---HHHhH---HhhcCCCEEEEEEECCCHH--------------------------------------------------
Confidence 11112 234 899999999985310
Q ss_pred HHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHH
Q psy2401 161 LLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKL 240 (363)
Q Consensus 161 ~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~ 240 (363)
.++.+.+++. .+........+|+++|+||.|.........+..+++....+.+++++||+
T Consensus 87 ---S~~~~~~~~~----------------~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~- 146 (221)
T cd04148 87 ---SFERASELRI----------------QLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAG- 146 (221)
T ss_pred ---HHHHHHHHHH----------------HHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCC-
Confidence 1111111111 11111122578999999999963211112233445555567789999998
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeC
Q psy2401 241 EEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTV 285 (363)
Q Consensus 241 e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~ 285 (363)
+..+++++++.+.+.+.+-+-.+.
T Consensus 147 ---------------------~~~gv~~l~~~l~~~~~~~~~~~~ 170 (221)
T cd04148 147 ---------------------LQHNVDELLEGIVRQIRLRRDSKE 170 (221)
T ss_pred ---------------------CCCCHHHHHHHHHHHHHhhhcccc
Confidence 456677777777766665555543
No 110
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.60 E-value=2.9e-14 Score=123.48 Aligned_cols=82 Identities=17% Similarity=0.172 Sum_probs=53.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|.+|||||||++++++........| ++.......+...+.. ..+.+|||||......
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~-t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~- 64 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIP-TIEDTYRQVISCSKNI---------------CTLQITDTTGSHQFPA- 64 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCC-cchheEEEEEEECCEE---------------EEEEEEECCCCCcchH-
Confidence 6899999999999999999998654322222 1111111122333321 6789999999754332
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|..
T Consensus 65 ------~~~~~~~~~~~~ilv~d~~ 83 (165)
T cd04140 65 ------MQRLSISKGHAFILVYSVT 83 (165)
T ss_pred ------HHHHHhhcCCEEEEEEECC
Confidence 1223457899999999985
No 111
>PLN03110 Rab GTPase; Provisional
Probab=99.60 E-value=1.6e-14 Score=131.26 Aligned_cols=83 Identities=23% Similarity=0.177 Sum_probs=61.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|++|||||||++++++........|....+.....+.+++.. ..+++|||||......
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~---------------~~l~l~Dt~G~~~~~~- 76 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKT---------------VKAQIWDTAGQERYRA- 76 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEE---------------EEEEEEECCCcHHHHH-
Confidence 689999999999999999999876554445544455555667776643 6799999999643222
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|..
T Consensus 77 ------~~~~~~~~~~~~ilv~d~~ 95 (216)
T PLN03110 77 ------ITSAYYRGAVGALLVYDIT 95 (216)
T ss_pred ------HHHHHhCCCCEEEEEEECC
Confidence 3335568999999999984
No 112
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.59 E-value=1.4e-14 Score=153.15 Aligned_cols=88 Identities=24% Similarity=0.252 Sum_probs=71.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.+|+|+|+||||||||||+|++.. +.++++|++|.+...+...+.+ ..+.+|||||+.....
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~-----------------~~~~liDT~G~~~~~~ 338 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG-----------------TDFKLVDTGGWEADVE 338 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC-----------------EEEEEEeCCCcCCCCc
Confidence 579999999999999999999874 5688999999998888888877 6789999999864322
Q ss_pred c-ccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 K-GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~-~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. ...+.++....++.+|++++|+|+.
T Consensus 339 ~~~~~~~~~~~~~~~~aD~iL~VvDa~ 365 (712)
T PRK09518 339 GIDSAIASQAQIAVSLADAVVFVVDGQ 365 (712)
T ss_pred cHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 1 1223445566789999999999985
No 113
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.59 E-value=3.2e-14 Score=121.49 Aligned_cols=88 Identities=33% Similarity=0.416 Sum_probs=64.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCc-cccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKI-SAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~-~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
++|+++|++|||||||+|++++... ..++.+.++.....+.....+ ..+.+|||||+.....
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~~ 66 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDD-----------------AQIIFVDTPGIHKPKK 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCC-----------------eEEEEEECCCCCcchH
Confidence 6899999999999999999998743 355566666665555544443 5689999999875443
Q ss_pred c-ccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 K-GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~-~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. ...+.......++.+|++++|+|+.
T Consensus 67 ~~~~~~~~~~~~~~~~~d~i~~v~d~~ 93 (168)
T cd04163 67 KLGERMVKAAWSALKDVDLVLFVVDAS 93 (168)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 2 1222234456678899999999985
No 114
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.59 E-value=1.2e-14 Score=130.30 Aligned_cols=83 Identities=24% Similarity=0.219 Sum_probs=56.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||++.+.+........|....+.....+.+++.. ..+.+||+||......
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~D~~G~~~~~~- 70 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGER---------------VKLQIWDTAGQERFRT- 70 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEE---------------EEEEEEeCCCchhHHH-
Confidence 689999999999999999999865433333322223333344444432 5788999999643222
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 71 ------~~~~~~~~a~~iilv~D~~ 89 (199)
T cd04110 71 ------ITSTYYRGTHGVIVVYDVT 89 (199)
T ss_pred ------HHHHHhCCCcEEEEEEECC
Confidence 3345668899999999984
No 115
>PTZ00369 Ras-like protein; Provisional
Probab=99.59 E-value=2.3e-14 Score=127.22 Aligned_cols=83 Identities=16% Similarity=0.138 Sum_probs=55.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|.+|||||||++++.+..... .+..++.......+.+++.. ..+++|||||..+...
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~- 68 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHFID-EYDPTIEDSYRKQCVIDEET---------------CLLDILDTAGQEEYSA- 68 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCc-CcCCchhhEEEEEEEECCEE---------------EEEEEEeCCCCccchh-
Confidence 689999999999999999999754322 22222211122344555532 5788999999755433
Q ss_pred ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
+ ....++.+|++++|+|+++
T Consensus 69 ---l---~~~~~~~~d~iilv~D~s~ 88 (189)
T PTZ00369 69 ---M---RDQYMRTGQGFLCVYSITS 88 (189)
T ss_pred ---h---HHHHhhcCCEEEEEEECCC
Confidence 2 2235578999999999853
No 116
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.59 E-value=1.7e-15 Score=113.48 Aligned_cols=70 Identities=26% Similarity=0.341 Sum_probs=61.6
Q ss_pred CEEEEeCCC----CceEEEeecCCCCHHHhhhhhhcchhcccEEEEEecccccccccChhhHhhcCceeecCCCeeeeCC
Q psy2401 279 LRTYFTVGK----KEIRAWTIPNGTTAEQAAGIIHTDIKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDG 354 (363)
Q Consensus 279 li~~ft~g~----~e~raw~~~~g~ta~~~A~~IHsD~~~gfi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dg 354 (363)
||+|||+.+ |..++.++++|||+.|+|.+||+||.+.|.+|.||+- .++..| +|+ |.+|+|+||
T Consensus 1 lirvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di~~~f~~A~v~g~----------s~~~~g-q~V-gl~~~L~d~ 68 (75)
T cd01666 1 LIRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDLVKQFKYALVWGS----------SVKHSP-QRV-GLDHVLEDE 68 (75)
T ss_pred CEEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHhCCeeEEecc----------CCcCCC-eEC-CCCCEecCC
Confidence 689999954 6689999999999999999999999999999999973 465545 556 999999999
Q ss_pred CEEEEE
Q psy2401 355 DILNFL 360 (363)
Q Consensus 355 dii~~~ 360 (363)
|||+|-
T Consensus 69 DvVeI~ 74 (75)
T cd01666 69 DVVQIV 74 (75)
T ss_pred CEEEEe
Confidence 999984
No 117
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.59 E-value=2.5e-14 Score=125.24 Aligned_cols=82 Identities=16% Similarity=0.132 Sum_probs=55.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|.+|||||||++.+.+........| +...-....+.+++.. ..+++|||||......
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~-t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~- 65 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDP-TIEDAYKQQARIDNEP---------------ALLDILDTAGQAEFTA- 65 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCC-cccceEEEEEEECCEE---------------EEEEEEeCCCchhhHH-
Confidence 6899999999999999999987544322222 1111112234555533 6789999999754332
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|..
T Consensus 66 ------l~~~~~~~~d~~ilv~d~~ 84 (172)
T cd04141 66 ------MRDQYMRCGEGFIICYSVT 84 (172)
T ss_pred ------HhHHHhhcCCEEEEEEECC
Confidence 2224568899999999985
No 118
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.59 E-value=2.2e-14 Score=122.43 Aligned_cols=81 Identities=22% Similarity=0.146 Sum_probs=58.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKG 83 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 83 (363)
||+++|++|||||||++++++.. ..+.++.++.+.......+++.. ..+++||+||.....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~g~~~~~--- 61 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVVDGET---------------YTLDILDTAGQEEFS--- 61 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEECCEE---------------EEEEEEECCChHHHH---
Confidence 68999999999999999999865 44555555555555556555422 678999999965421
Q ss_pred cchhhHHHhhccccCEEEEEEecc
Q psy2401 84 EGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 84 ~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
......++.+|++++|+|..
T Consensus 62 ----~~~~~~~~~~~~~i~v~d~~ 81 (160)
T cd00876 62 ----AMRDLYIRQGDGFILVYSIT 81 (160)
T ss_pred ----HHHHHHHhcCCEEEEEEECC
Confidence 12234567899999999984
No 119
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.59 E-value=5e-15 Score=133.78 Aligned_cols=81 Identities=20% Similarity=0.150 Sum_probs=59.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHcC-Ccccc------------------------------CCCceeecceeEEEEeCCcccc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKL-KISAE------------------------------NYPFCTIEPNIGIIEVPDKRLK 52 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~-~~~~~------------------------------~~p~~t~~~~~g~v~~~~~~~~ 52 (363)
+|+++|++|+|||||+++|+.. .+..+ ..+++|+++....+.+++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~---- 76 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK---- 76 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC----
Confidence 6899999999999999999754 22111 115667777776666665
Q ss_pred ccccccccccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 53 HLNNIVKTKKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 53 ~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.++.++||||+.++ .......++.+|++++|+|+..
T Consensus 77 -------------~~~~liDTpG~~~~-------~~~~~~~~~~ad~~llVvD~~~ 112 (208)
T cd04166 77 -------------RKFIIADTPGHEQY-------TRNMVTGASTADLAILLVDARK 112 (208)
T ss_pred -------------ceEEEEECCcHHHH-------HHHHHHhhhhCCEEEEEEECCC
Confidence 67899999997432 2345566789999999999853
No 120
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.59 E-value=1.7e-15 Score=113.93 Aligned_cols=64 Identities=33% Similarity=0.624 Sum_probs=53.1
Q ss_pred CEEEEeCCCCc-----------eEEEeecCCCCHHHhhhhhhcchhcccEEEEEecccccccccChhhHhhcCceeecCC
Q psy2401 279 LRTYFTVGKKE-----------IRAWTIPNGTTAEQAAGIIHTDIKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGK 347 (363)
Q Consensus 279 li~~ft~g~~e-----------~raw~~~~g~ta~~~A~~IHsD~~~gfi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk 347 (363)
++|||++. ++ .+||++++|+||.|+|+.||+||.++|++|.+ +| .| +.+|+
T Consensus 1 ~~~v~pv~-~~~~~~~~~~~~~~d~~~l~~GaTv~D~A~~IHtdi~~~f~~Ai~--------------~k-~~--~~vg~ 62 (76)
T cd01669 1 MIVVYPVE-DENKLTDKEGNVLPDAFLLPKGSTARDLAYAIHTDIGDGFLHAID--------------AR-TG--RRVGE 62 (76)
T ss_pred CccEEecc-cCCcccCCCCCCccceEEECCCCCHHHHHHHHHHHHHhcceeeEE--------------ee-CC--EEeCC
Confidence 57899972 21 37999999999999999999999999999963 23 23 35599
Q ss_pred CeeeeCCCEEEEE
Q psy2401 348 KYLVEDGDILNFL 360 (363)
Q Consensus 348 ~y~v~dgdii~~~ 360 (363)
+|+|+|||||+|-
T Consensus 63 ~~~L~dgDvV~Ii 75 (76)
T cd01669 63 DYELKHRDVIKIV 75 (76)
T ss_pred CcEecCCCEEEEe
Confidence 9999999999984
No 121
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.59 E-value=3.5e-14 Score=122.90 Aligned_cols=83 Identities=22% Similarity=0.191 Sum_probs=59.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.+++++|++|||||||++++++........|..+.+.....+.+.+.. ..+.+||+||......
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~~~- 71 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEK---------------IKLQIWDTAGQERFRS- 71 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEE---------------EEEEEEECCCcHHHHH-
Confidence 689999999999999999999755444444444444555556666633 5688999999643222
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 72 ------~~~~~~~~~d~~i~v~d~~ 90 (169)
T cd04114 72 ------ITQSYYRSANALILTYDIT 90 (169)
T ss_pred ------HHHHHhcCCCEEEEEEECc
Confidence 2335568899999999984
No 122
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.59 E-value=3.2e-14 Score=124.30 Aligned_cols=82 Identities=20% Similarity=0.133 Sum_probs=58.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKG 83 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 83 (363)
||+++|.+|||||||++++.+........|....+.....+.+.+.. ..+++|||||..++..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~-- 64 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVP---------------FSLQLWDTAGQERFKC-- 64 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEE---------------EEEEEEeCCChHHHHh--
Confidence 79999999999999999999865543333433334434455555543 6799999999754332
Q ss_pred cchhhHHHhhccccCEEEEEEecc
Q psy2401 84 EGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 84 ~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 65 -----~~~~~~~~ad~~ilv~d~~ 83 (170)
T cd04108 65 -----IASTYYRGAQAIIIVFDLT 83 (170)
T ss_pred -----hHHHHhcCCCEEEEEEECc
Confidence 2235568999999999984
No 123
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.58 E-value=2.3e-14 Score=123.75 Aligned_cols=78 Identities=22% Similarity=0.287 Sum_probs=54.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.+|||||||++++...... ...| |...+...+...+ .++.+|||||..+...
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~p--t~g~~~~~~~~~~-----------------~~~~l~D~~G~~~~~~- 59 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDKIRP- 59 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCC--CCCcceEEEEECC-----------------EEEEEEECCCCHhHHH-
Confidence 58999999999999999999754332 2233 3333333444443 7799999999743221
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 60 ------~~~~~~~~ad~~i~v~D~~ 78 (159)
T cd04150 60 ------LWRHYFQNTQGLIFVVDSN 78 (159)
T ss_pred ------HHHHHhcCCCEEEEEEeCC
Confidence 2335579999999999985
No 124
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.58 E-value=3.3e-14 Score=124.37 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=55.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcccc---------------CCCceeecceeEEEEe---CCcccccccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAE---------------NYPFCTIEPNIGIIEV---PDKRLKHLNNIVKTKKIF 64 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~---------------~~p~~t~~~~~g~v~~---~~~~~~~l~~~~~~~~~~ 64 (363)
++|+++|++|+|||||+++|++....+. ...++|..+....+.+ ++.
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~--------------- 65 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQ--------------- 65 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCC---------------
Confidence 4799999999999999999987421110 0123343333333333 221
Q ss_pred ceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 65 PAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 65 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
...+++|||||+.++.. .....++.+|++++|+|++.
T Consensus 66 ~~~~~l~Dt~G~~~~~~-------~~~~~~~~ad~~i~v~D~~~ 102 (179)
T cd01890 66 EYLLNLIDTPGHVDFSY-------EVSRSLAACEGALLLVDATQ 102 (179)
T ss_pred cEEEEEEECCCChhhHH-------HHHHHHHhcCeEEEEEECCC
Confidence 16789999999865432 44456788999999999853
No 125
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.58 E-value=2.9e-14 Score=150.73 Aligned_cols=181 Identities=18% Similarity=0.200 Sum_probs=118.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.+|+++|+||||||||+|+|++.. ..++++|+||.++....+.+++ .++.+|||||+.+...
T Consensus 451 ~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~-----------------~~~~liDTaG~~~~~~ 513 (712)
T PRK09518 451 RRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG-----------------EDWLFIDTAGIKRRQH 513 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC-----------------CEEEEEECCCcccCcc
Confidence 689999999999999999999985 4578999999999988888887 5678999999865433
Q ss_pred cccch---h-hHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCch
Q psy2401 82 KGEGL---G-NKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEH 157 (363)
Q Consensus 82 ~~~~l---~-~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~ 157 (363)
...+. . .+....++.+|++++|+|+++...
T Consensus 514 ~~~~~e~~~~~r~~~~i~~advvilViDat~~~s---------------------------------------------- 547 (712)
T PRK09518 514 KLTGAEYYSSLRTQAAIERSELALFLFDASQPIS---------------------------------------------- 547 (712)
T ss_pred cchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCC----------------------------------------------
Confidence 22111 0 122345788999999999953210
Q ss_pred hHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhc-----CCCc
Q psy2401 158 SIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHN-----QNIP 232 (363)
Q Consensus 158 ~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~-----~~~~ 232 (363)
..+...+... ....+|+++|+||.|+. ..+..+.+++.+.. ...+
T Consensus 548 ---------------------------~~~~~i~~~~-~~~~~piIiV~NK~DL~--~~~~~~~~~~~~~~~l~~~~~~~ 597 (712)
T PRK09518 548 ---------------------------EQDLKVMSMA-VDAGRALVLVFNKWDLM--DEFRRQRLERLWKTEFDRVTWAR 597 (712)
T ss_pred ---------------------------HHHHHHHHHH-HHcCCCEEEEEEchhcC--ChhHHHHHHHHHHHhccCCCCCC
Confidence 0000001001 11468999999999963 22222333322221 1346
Q ss_pred EEEeeHHHHHHHhcCCHHHHHHHHh-hcCCCchhHHHHHHHHHHh
Q psy2401 233 IIIICAKLEEEISDLNNIDKKFFLD-NLGLKETKLNDLIRASFSL 276 (363)
Q Consensus 233 ~i~~sa~~e~~i~el~~~~~~~~l~-~~~l~~~~l~~l~~~~~~~ 276 (363)
++++||+...++.++.+...+.+.. ...++.+.+++.++++...
T Consensus 598 ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l~~~~~~ 642 (712)
T PRK09518 598 RVNLSAKTGWHTNRLAPAMQEALESWDQRIPTGKLNAFLGKIQAE 642 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhh
Confidence 7999999998888876544443332 1234455788888876643
No 126
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.58 E-value=2.8e-14 Score=126.12 Aligned_cols=83 Identities=17% Similarity=0.221 Sum_probs=54.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCC-ccccccccccccccccceeEEEEeeecccCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPD-KRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~-~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
..||+++|++|||||||++++...... ..+|........-.+.+.+ .. ..+.+|||||.....
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~~~~ 66 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTKGFNTEKIKVSLGNSKG---------------ITFHFWDVGGQEKLR 66 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC-CcCCccccceeEEEeeccCCCc---------------eEEEEEECCCcHhHH
Confidence 468999999999999999999875432 3344322222222222211 11 679999999964322
Q ss_pred CcccchhhHHHhhccccCEEEEEEecc
Q psy2401 81 SKGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 81 ~~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. .....++++|++++|+|++
T Consensus 67 ~-------~~~~~~~~~d~ii~v~D~~ 86 (183)
T cd04152 67 P-------LWKSYTRCTDGIVFVVDSV 86 (183)
T ss_pred H-------HHHHHhccCCEEEEEEECC
Confidence 1 2334568999999999985
No 127
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.58 E-value=1e-14 Score=128.35 Aligned_cols=85 Identities=26% Similarity=0.242 Sum_probs=59.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC--ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK--ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~--~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
.+|+++|++|+|||||+|+|++.. ..+++.+++|.++....+ + ..+.+|||||+....
T Consensus 19 ~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~------------------~~~~liDtpG~~~~~ 78 (179)
T TIGR03598 19 PEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N------------------DGFRLVDLPGYGYAK 78 (179)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C------------------CcEEEEeCCCCcccc
Confidence 689999999999999999999874 456778888776553322 1 248899999986432
Q ss_pred Ccc------cchhhHHHhhccccCEEEEEEecc
Q psy2401 81 SKG------EGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 81 ~~~------~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
... ..+...++.....+|++++|+|+.
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~ 111 (179)
T TIGR03598 79 VSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIR 111 (179)
T ss_pred CChhHHHHHHHHHHHHHHhChhhcEEEEEecCC
Confidence 211 112223444444578999999984
No 128
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.58 E-value=2.6e-14 Score=124.86 Aligned_cols=78 Identities=22% Similarity=0.311 Sum_probs=53.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.+|+++|++|||||||++++++.... ...| |.......+.+++ ..+.+|||||......
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~--t~g~~~~~~~~~~-----------------~~l~l~D~~G~~~~~~- 73 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDID-TISP--TLGFQIKTLEYEG-----------------YKLNIWDVGGQKTLRP- 73 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCC-CcCC--ccccceEEEEECC-----------------EEEEEEECCCCHHHHH-
Confidence 68999999999999999999986321 1111 2222333444443 6789999999653221
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 74 ------~~~~~~~~~d~~i~v~d~~ 92 (173)
T cd04154 74 ------YWRNYFESTDALIWVVDSS 92 (173)
T ss_pred ------HHHHHhCCCCEEEEEEECC
Confidence 2334568999999999985
No 129
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.57 E-value=5.6e-14 Score=124.80 Aligned_cols=83 Identities=16% Similarity=0.120 Sum_probs=56.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeec-ceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIE-PNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~-~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
+||+++|.+|||||||++++++.....+++..+... .....+.+++.. ..+++||+||......
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~D~~G~~~~~~ 65 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERV---------------VTLGIWDTAGSERYEA 65 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEE---------------EEEEEEECCCchhhhh
Confidence 589999999999999999999876554444332211 122345666543 5788999999644322
Q ss_pred cccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+ ....++.+|++++|+|+.
T Consensus 66 ----~---~~~~~~~~d~iilv~d~~ 84 (193)
T cd04118 66 ----M---SRIYYRGAKAAIVCYDLT 84 (193)
T ss_pred ----h---hHhhcCCCCEEEEEEECC
Confidence 1 123457899999999984
No 130
>PRK04213 GTP-binding protein; Provisional
Probab=99.57 E-value=7.8e-14 Score=124.76 Aligned_cols=84 Identities=24% Similarity=0.262 Sum_probs=58.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.+|+++|++|||||||+|+|++....++..|++|..+.. +.+ ..+.+|||||+......
T Consensus 10 ~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~--~~~-------------------~~~~l~Dt~G~~~~~~~ 68 (201)
T PRK04213 10 PEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH--YDW-------------------GDFILTDLPGFGFMSGV 68 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE--Eee-------------------cceEEEeCCcccccccc
Confidence 689999999999999999999988778888988877542 222 24789999997432211
Q ss_pred c----cchh---hHHH-hhccccCEEEEEEecc
Q psy2401 83 G----EGLG---NKFL-AHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~----~~l~---~~~l-~~~~~aD~il~Vvda~ 107 (363)
. +.+. ..++ ..+..+|++++|+|+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~ 101 (201)
T PRK04213 69 PKEVQEKIKDEIVRYIEDNADRILAAVLVVDGK 101 (201)
T ss_pred CHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCc
Confidence 1 1111 1122 2345678999999874
No 131
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.57 E-value=3.1e-14 Score=123.05 Aligned_cols=75 Identities=20% Similarity=0.285 Sum_probs=52.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.+|+++|++|+|||||+|+|++... .....+.+.+.+ . .+|||||+.....
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~---------~~~~~~~v~~~~-----------------~--~~iDtpG~~~~~~- 52 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYT---------LARKTQAVEFND-----------------K--GDIDTPGEYFSHP- 52 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCc---------cCccceEEEECC-----------------C--CcccCCccccCCH-
Confidence 4899999999999999999998431 112334445543 1 2699999854322
Q ss_pred ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.+.+.+...++.+|++++|+|+..
T Consensus 53 --~~~~~~~~~~~~ad~il~v~d~~~ 76 (158)
T PRK15467 53 --RWYHALITTLQDVDMLIYVHGAND 76 (158)
T ss_pred --HHHHHHHHHHhcCCEEEEEEeCCC
Confidence 122344566789999999999853
No 132
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.57 E-value=1.7e-14 Score=148.88 Aligned_cols=81 Identities=35% Similarity=0.521 Sum_probs=65.4
Q ss_pred eCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc--ccch
Q psy2401 9 GLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK--GEGL 86 (363)
Q Consensus 9 G~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~--~~~l 86 (363)
|.||||||||+|+|++....++++|++|.+...+.+.+++ .++++|||||..+.... .+.+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~-----------------~~i~lvDtPG~~~~~~~s~~e~v 63 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG-----------------EDIEIVDLPGIYSLTTFSLEEEV 63 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC-----------------eEEEEEECCCccccCccchHHHH
Confidence 8999999999999999988899999999999999999887 67899999999765432 1222
Q ss_pred hhHHHhhccccCEEEEEEecc
Q psy2401 87 GNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 87 ~~~~l~~~~~aD~il~Vvda~ 107 (363)
.+.++. .+.+|++++|+|++
T Consensus 64 ~~~~l~-~~~aDvvI~VvDat 83 (591)
T TIGR00437 64 ARDYLL-NEKPDLVVNVVDAS 83 (591)
T ss_pred HHHHHh-hcCCCEEEEEecCC
Confidence 233322 35789999999984
No 133
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.57 E-value=2.6e-14 Score=124.26 Aligned_cols=81 Identities=15% Similarity=0.118 Sum_probs=52.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEE--EeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGII--EVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v--~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
.||+++|.+|||||||+++++.........| |........ ..++.. ..+.+|||||.....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~ 63 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVA--TLGVEVHPLDFHTNRGK---------------IRFNVWDTAGQEKFG 63 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--ceeeEEEEEEEEECCEE---------------EEEEEEECCCChhhc
Confidence 4899999999999999999986433222222 222222222 222221 678999999975433
Q ss_pred CcccchhhHHHhhccccCEEEEEEecc
Q psy2401 81 SKGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 81 ~~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. +.+ ..++.+|++++|+|++
T Consensus 64 ~----~~~---~~~~~~d~~i~v~d~~ 83 (166)
T cd00877 64 G----LRD---GYYIGGQCAIIMFDVT 83 (166)
T ss_pred c----ccH---HHhcCCCEEEEEEECC
Confidence 2 222 3457899999999985
No 134
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.57 E-value=6.7e-14 Score=129.75 Aligned_cols=82 Identities=12% Similarity=0.157 Sum_probs=57.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|.+|||||||++++.+..... .|..|+.+.....+.+++.. ..+++|||+|...+..
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~-~y~pTi~d~~~k~~~i~~~~---------------~~l~I~Dt~G~~~~~~- 63 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEE-QYTPTIEDFHRKLYSIRGEV---------------YQLDILDTSGNHPFPA- 63 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCChhHhEEEEEEECCEE---------------EEEEEEECCCChhhhH-
Confidence 489999999999999999998754433 34334434444556666643 6789999999654322
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+ ....++.+|++++|+|+.
T Consensus 64 ---~---~~~~~~~ad~iIlVfdv~ 82 (247)
T cd04143 64 ---M---RRLSILTGDVFILVFSLD 82 (247)
T ss_pred ---H---HHHHhccCCEEEEEEeCC
Confidence 1 112457899999999985
No 135
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.57 E-value=6.1e-14 Score=120.82 Aligned_cols=83 Identities=20% Similarity=0.303 Sum_probs=53.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCcee-ecceeEEEEeC-CccccccccccccccccceeEEEEeeecccCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCT-IEPNIGIIEVP-DKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSG 79 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t-~~~~~g~v~~~-~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
+||+++|.+|||||||++++.... ....+++.++ .+...-.+.+. +.+ .++.+|||||....
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~ 65 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNT---------------VELFIFDSAGQELY 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCE---------------EEEEEEECCCHHHH
Confidence 489999999999999999998642 2233343222 22222233333 222 67999999996332
Q ss_pred CCcccchhhHHHhhccccCEEEEEEecc
Q psy2401 80 ASKGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 80 ~~~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. .+ ....++.+|++++|+|.+
T Consensus 66 ~----~~---~~~~~~~~d~ii~v~d~~ 86 (164)
T cd04101 66 S----DM---VSNYWESPSVFILVYDVS 86 (164)
T ss_pred H----HH---HHHHhCCCCEEEEEEECc
Confidence 1 12 234558899999999984
No 136
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.57 E-value=4.1e-14 Score=120.02 Aligned_cols=78 Identities=24% Similarity=0.350 Sum_probs=55.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKG 83 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 83 (363)
.|+++|++|||||||+|+|++........| |...+...+..++ ..+.+||+||.....
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~--t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~~--- 58 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIP--TVGFNMRKVTKGN-----------------VTLKVWDLGGQPRFR--- 58 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccC--CCCcceEEEEECC-----------------EEEEEEECCCCHhHH---
Confidence 389999999999999999999755444444 3334434444443 679999999964322
Q ss_pred cchhhHHHhhccccCEEEEEEecc
Q psy2401 84 EGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 84 ~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
......++.+|++++|+|+.
T Consensus 59 ----~~~~~~~~~~d~ii~v~d~~ 78 (159)
T cd04159 59 ----SMWERYCRGVNAIVYVVDAA 78 (159)
T ss_pred ----HHHHHHHhcCCEEEEEEECC
Confidence 12334568899999999984
No 137
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.57 E-value=4.4e-14 Score=123.87 Aligned_cols=82 Identities=21% Similarity=0.127 Sum_probs=55.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|++|||||||++.+++........| ++.......+.+.+.. ..+.+|||||..+...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~---------------~~~~l~D~~g~~~~~~- 64 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYP-TIENTFSKIIRYKGQD---------------YHLEIVDTAGQDEYSI- 64 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCc-chhhhEEEEEEECCEE---------------EEEEEEECCChHhhHH-
Confidence 6899999999999999999998654333333 3333334445554422 5688999999754321
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
........+|++++|+|++
T Consensus 65 ------~~~~~~~~~~~~i~v~d~~ 83 (180)
T cd04137 65 ------LPQKYSIGIHGYILVYSVT 83 (180)
T ss_pred ------HHHHHHhhCCEEEEEEECC
Confidence 1123457799999999985
No 138
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.57 E-value=4.4e-14 Score=123.70 Aligned_cols=78 Identities=27% Similarity=0.307 Sum_probs=57.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.+|+++|++|||||||++++++.... ...| |..++...+.+.+ .++.+|||||.....
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~-----------------~~~~l~D~~G~~~~~-- 73 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVV-HTSP--TIGSNVEEIVYKN-----------------IRFLMWDIGGQESLR-- 73 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCC-CcCC--ccccceEEEEECC-----------------eEEEEEECCCCHHHH--
Confidence 68999999999999999999875432 2222 4445555556554 789999999975322
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+.....++.+|++++|+|++
T Consensus 74 -----~~~~~~~~~~d~vi~V~D~s 93 (174)
T cd04153 74 -----SSWNTYYTNTDAVILVIDST 93 (174)
T ss_pred -----HHHHHHhhcCCEEEEEEECC
Confidence 23345678999999999985
No 139
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.56 E-value=2.8e-14 Score=122.37 Aligned_cols=78 Identities=21% Similarity=0.341 Sum_probs=53.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKG 83 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 83 (363)
+|+++|++|||||||++++++.... ...| |.......+.+++. ..+.+|||||.....
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~~~~--t~~~~~~~~~~~~~----------------~~l~i~D~~G~~~~~--- 58 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-TTIP--TVGFNVEMLQLEKH----------------LSLTVWDVGGQEKMR--- 58 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-cccC--ccCcceEEEEeCCc----------------eEEEEEECCCCHhHH---
Confidence 5899999999999999999986432 2223 22223333443321 579999999974322
Q ss_pred cchhhHHHhhccccCEEEEEEecc
Q psy2401 84 EGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 84 ~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
......++.+|++++|+|++
T Consensus 59 ----~~~~~~~~~~~~iv~v~D~~ 78 (160)
T cd04156 59 ----TVWKCYLENTDGLVYVVDSS 78 (160)
T ss_pred ----HHHHHHhccCCEEEEEEECC
Confidence 23345578899999999985
No 140
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.56 E-value=5.9e-14 Score=124.90 Aligned_cols=96 Identities=19% Similarity=0.222 Sum_probs=63.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC-------CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeec
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL-------KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAG 75 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~-------~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpG 75 (363)
.+|+++|++|+|||||+++|++. ....+..+++|.+.....+.+...... ............+.+|||||
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~DtpG 77 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHL---RELINPGEENLQITLVDCPG 77 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccc---cccccccccCceEEEEECCC
Confidence 47999999999999999999973 122334567787777666666421000 00000001126789999999
Q ss_pred ccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 76 LVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 76 l~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.. .+.+.+...++.+|++++|+|+..
T Consensus 78 ~~-------~~~~~~~~~~~~~d~vi~VvD~~~ 103 (192)
T cd01889 78 HA-------SLIRTIIGGAQIIDLMLLVVDATK 103 (192)
T ss_pred cH-------HHHHHHHHHHhhCCEEEEEEECCC
Confidence 73 234566667788999999999853
No 141
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.56 E-value=5.4e-14 Score=123.50 Aligned_cols=81 Identities=21% Similarity=0.268 Sum_probs=56.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccC----------------CCceeecceeEEEEeCCcccccccccccccccccee
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAEN----------------YPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAI 67 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~----------------~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~ 67 (363)
+|+++|.+|||||||+|+|++....... .++.|.......+.+.+ ..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~ 63 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPD-----------------RR 63 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCC-----------------EE
Confidence 5899999999999999999976333221 12334444444444433 67
Q ss_pred EEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 68 IKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 68 i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
+.+|||||.... .+.....++.+|++++|+|+++
T Consensus 64 ~~liDtpG~~~~-------~~~~~~~~~~~d~~i~v~d~~~ 97 (189)
T cd00881 64 VNFIDTPGHEDF-------SSEVIRGLSVSDGAILVVDANE 97 (189)
T ss_pred EEEEeCCCcHHH-------HHHHHHHHHhcCEEEEEEECCC
Confidence 999999997532 2345566789999999999853
No 142
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.56 E-value=4.9e-14 Score=124.69 Aligned_cols=78 Identities=19% Similarity=0.293 Sum_probs=59.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.+|+++|++|||||||++.+++.... .+ ..|..++.+.+.+.+ .++.++|+||......
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~-----------------~~~~~~D~~G~~~~~~- 76 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRLA--QH-QPTQHPTSEELAIGN-----------------IKFTTFDLGGHQQARR- 76 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--cc-CCccccceEEEEECC-----------------EEEEEEECCCCHHHHH-
Confidence 68999999999999999999986432 11 225666667777766 6789999999753221
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
....+++++|++++|+|++
T Consensus 77 ------~~~~~~~~ad~ii~vvD~~ 95 (184)
T smart00178 77 ------LWKDYFPEVNGIVYLVDAY 95 (184)
T ss_pred ------HHHHHhCCCCEEEEEEECC
Confidence 3335668999999999985
No 143
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.56 E-value=8.4e-14 Score=124.60 Aligned_cols=81 Identities=17% Similarity=0.159 Sum_probs=56.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKG 83 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 83 (363)
||+++|.+|||||||++++++.... ..++.++.......+.+.+.. ..+++||+||......
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~D~~G~~~~~~-- 62 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE-PKYRRTVEEMHRKEYEVGGVS---------------LTLDILDTSGSYSFPA-- 62 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchhhheeEEEEECCEE---------------EEEEEEECCCchhhhH--
Confidence 6899999999999999999986433 334444434444455665532 5789999999754322
Q ss_pred cchhhHHHhhccccCEEEEEEecc
Q psy2401 84 EGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 84 ~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+ ....++.+|++++|+|+.
T Consensus 63 --~---~~~~~~~ad~vilv~d~~ 81 (198)
T cd04147 63 --M---RKLSIQNSDAFALVYAVD 81 (198)
T ss_pred --H---HHHHhhcCCEEEEEEECC
Confidence 1 123558899999999984
No 144
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.55 E-value=9e-14 Score=123.93 Aligned_cols=83 Identities=22% Similarity=0.167 Sum_probs=57.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcC-CccccC---------------CCceeecceeEEEEeCCccccccccccccccccc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKL-KISAEN---------------YPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFP 65 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~-~~~~~~---------------~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~ 65 (363)
.++|+++|.+|||||||+++|++. ...... ..++|.......+.+.+
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~----------------- 64 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKD----------------- 64 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECC-----------------
Confidence 368999999999999999999863 111111 13344444444444444
Q ss_pred eeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 66 AIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 66 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
..+++|||||..++. ......++.+|++++|+|+++
T Consensus 65 ~~~~l~DtpG~~~~~-------~~~~~~~~~~d~~ilV~d~~~ 100 (194)
T cd01891 65 TKINIVDTPGHADFG-------GEVERVLSMVDGVLLLVDASE 100 (194)
T ss_pred EEEEEEECCCcHHHH-------HHHHHHHHhcCEEEEEEECCC
Confidence 679999999976432 244566789999999999953
No 145
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.55 E-value=9.3e-14 Score=122.86 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=57.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.+|||||||++.+.+........|....+.....+.+++.. ..+++|||+|......
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~---------------~~l~iwDt~G~~~~~~- 64 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTE---------------ITFSIWDLGGQREFIN- 64 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEE---------------EEEEEEeCCCchhHHH-
Confidence 589999999999999999998764433223322222222345666543 6799999999754332
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++++|++++|+|++
T Consensus 65 ------~~~~~~~~a~~iilv~D~t 83 (182)
T cd04128 65 ------MLPLVCNDAVAILFMFDLT 83 (182)
T ss_pred ------hhHHHCcCCCEEEEEEECc
Confidence 2224568999999999985
No 146
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.55 E-value=6.3e-14 Score=120.35 Aligned_cols=77 Identities=22% Similarity=0.311 Sum_probs=54.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKG 83 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 83 (363)
||+++|++|||||||+++|+..... ...| |...+...+.+.+ .++++|||||......
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~~-- 58 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIP--TIGFNVETVTYKN-----------------LKFQVWDLGGQTSIRP-- 58 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCC--ccCcCeEEEEECC-----------------EEEEEEECCCCHHHHH--
Confidence 6899999999999999999765332 2223 4444444454444 6799999999754322
Q ss_pred cchhhHHHhhccccCEEEEEEecc
Q psy2401 84 EGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 84 ~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 59 -----~~~~~~~~~~~ii~v~d~~ 77 (158)
T cd04151 59 -----YWRCYYSNTDAIIYVVDST 77 (158)
T ss_pred -----HHHHHhcCCCEEEEEEECC
Confidence 3345568899999999985
No 147
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.55 E-value=5.5e-14 Score=120.57 Aligned_cols=79 Identities=20% Similarity=0.199 Sum_probs=53.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKG 83 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 83 (363)
+|+++|++|||||||++++++.......+. .|.......+...+ ..+++|||||......
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~-~t~g~~~~~~~~~~-----------------~~~~l~Dt~G~~~~~~-- 60 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV-PTVGFNVESFEKGN-----------------LSFTAFDMSGQGKYRG-- 60 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec-CccccceEEEEECC-----------------EEEEEEECCCCHhhHH--
Confidence 589999999999999999998543222221 12222222333333 6799999999754322
Q ss_pred cchhhHHHhhccccCEEEEEEecc
Q psy2401 84 EGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 84 ~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 61 -----~~~~~~~~~d~ii~v~D~~ 79 (162)
T cd04157 61 -----LWEHYYKNIQGIIFVIDSS 79 (162)
T ss_pred -----HHHHHHccCCEEEEEEeCC
Confidence 2234568899999999985
No 148
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.55 E-value=1.1e-13 Score=119.48 Aligned_cols=83 Identities=20% Similarity=0.133 Sum_probs=60.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCC-ccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPD-KRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~-~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.|+++|++|||||||+|+|++........+++|.+.....+.... .. ..+.+|||||.....
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~iiDtpG~~~~~-- 64 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKI---------------PGITFIDTPGHEAFT-- 64 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCc---------------ceEEEEeCCCcHHHH--
Confidence 589999999999999999998766655666777766555555531 01 578999999964321
Q ss_pred ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
......++.+|++++|+|+++
T Consensus 65 -----~~~~~~~~~~d~il~v~d~~~ 85 (168)
T cd01887 65 -----NMRARGASLTDIAILVVAADD 85 (168)
T ss_pred -----HHHHHHHhhcCEEEEEEECCC
Confidence 122234578999999999953
No 149
>KOG0084|consensus
Probab=99.54 E-value=2.8e-14 Score=123.97 Aligned_cols=152 Identities=19% Similarity=0.180 Sum_probs=107.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||.|+|.+|||||.|+..+.+.....+-....-++.....+.+++++ .++++|||+|..++.+
T Consensus 10 FKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~---------------iKlQIWDTAGQERFrt- 73 (205)
T KOG0084|consen 10 FKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKT---------------IKLQIWDTAGQERFRT- 73 (205)
T ss_pred EEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceE---------------EEEEeeeccccHHHhh-
Confidence 699999999999999999998855443333333445556677888876 7899999999866554
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
.+.++.|+|++||+|.|... .
T Consensus 74 ------it~syYR~ahGii~vyDiT~-----------------------------------------------------~ 94 (205)
T KOG0084|consen 74 ------ITSSYYRGAHGIIFVYDITK-----------------------------------------------------Q 94 (205)
T ss_pred ------hhHhhccCCCeEEEEEEccc-----------------------------------------------------H
Confidence 66788899999999999853 1
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCc-EEEeeHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIP-IIIICAKLE 241 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~-~i~~sa~~e 241 (363)
..++.+..|+.+ ++.+ -....|.++|+||.|+.....-..+..+++..+++.+ ++.+||+.-
T Consensus 95 ~SF~~v~~Wi~E----------------i~~~-~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~ 157 (205)
T KOG0084|consen 95 ESFNNVKRWIQE----------------IDRY-ASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDS 157 (205)
T ss_pred HHhhhHHHHHHH----------------hhhh-ccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCc
Confidence 334455555552 1112 1134689999999997432222345667777788888 999999965
Q ss_pred HHHhc
Q psy2401 242 EEISD 246 (363)
Q Consensus 242 ~~i~e 246 (363)
.++.+
T Consensus 158 ~NVe~ 162 (205)
T KOG0084|consen 158 TNVED 162 (205)
T ss_pred cCHHH
Confidence 55443
No 150
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.54 E-value=6.6e-14 Score=122.06 Aligned_cols=78 Identities=18% Similarity=0.230 Sum_probs=53.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.+|+++|++|||||||+++|+..... ...| |...+...+...+ ..+++|||||......
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~--t~g~~~~~~~~~~-----------------~~~~l~Dt~G~~~~~~- 68 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQSV-TTIP--TVGFNVETVTYKN-----------------VKFNVWDVGGQDKIRP- 68 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCCCc-cccC--CcccceEEEEECC-----------------EEEEEEECCCCHHHHH-
Confidence 68999999999999999999864321 2223 2222233333333 6799999999753221
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 69 ------~~~~~~~~a~~ii~v~D~t 87 (168)
T cd04149 69 ------LWRHYYTGTQGLIFVVDSA 87 (168)
T ss_pred ------HHHHHhccCCEEEEEEeCC
Confidence 2234568999999999985
No 151
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.54 E-value=1.1e-13 Score=118.68 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=55.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKG 83 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 83 (363)
||+++|++|||||||++++++.... .. ..|.......+.+.+ ..+.+||+||......
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~--~~t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~~~~-- 58 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TT--IPTIGFNVETVEYKN-----------------VSFTVWDVGGQDKIRP-- 58 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CC--CCCcCcceEEEEECC-----------------EEEEEEECCCChhhHH--
Confidence 6899999999999999999987521 11 223334444455544 6799999999754322
Q ss_pred cchhhHHHhhccccCEEEEEEeccc
Q psy2401 84 EGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 84 ~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.....++.+|++++|+|++.
T Consensus 59 -----~~~~~~~~~~~~i~v~D~~~ 78 (158)
T cd00878 59 -----LWKHYYENTNGIIFVVDSSD 78 (158)
T ss_pred -----HHHHHhccCCEEEEEEECCC
Confidence 23345578999999999953
No 152
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=9.7e-14 Score=144.18 Aligned_cols=227 Identities=15% Similarity=0.091 Sum_probs=171.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC---cc---------ccCC------CceeecceeEEEEeCCcccccccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK---IS---------AENY------PFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIF 64 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~---~~---------~~~~------p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~ 64 (363)
++|||+||..+|||||..+|.-.. .+ ..++ .+.|+......+.|.+.
T Consensus 11 RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~--------------- 75 (697)
T COG0480 11 RNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGD--------------- 75 (697)
T ss_pred eEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCc---------------
Confidence 689999999999999999996321 11 1111 36677777677777741
Q ss_pred ceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHh-h
Q psy2401 65 PAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEK-Y 143 (363)
Q Consensus 65 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~-~ 143 (363)
..|+++||||.+++.. +..+.+|.+|+++.|+|+-++. ..++|.+|+.+..... |
T Consensus 76 -~~iNlIDTPGHVDFt~-------EV~rslrvlDgavvVvdaveGV----------------~~QTEtv~rqa~~~~vp~ 131 (697)
T COG0480 76 -YRINLIDTPGHVDFTI-------EVERSLRVLDGAVVVVDAVEGV----------------EPQTETVWRQADKYGVPR 131 (697)
T ss_pred -eEEEEeCCCCccccHH-------HHHHHHHhhcceEEEEECCCCe----------------eecHHHHHHHHhhcCCCe
Confidence 6899999999998876 6778889999999999996654 3456899998888776 6
Q ss_pred hhhhhcccccCCchhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhh-cccccccEEEe-ccccccCCCchHHHHH
Q psy2401 144 IDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFL-NLLTIKPIIFV-ANVKENGFKNNLLLDQ 221 (363)
Q Consensus 144 ~~~i~k~~~~g~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~-~~l~~kp~i~v-~Nk~d~~~~~~~~~~~ 221 (363)
+.++|||++.+ .++..+.++++..|.....+.++|+..++ .+.++ +++..+.+.+- ....+....|.+..+.
T Consensus 132 i~fiNKmDR~~----a~~~~~~~~l~~~l~~~~~~v~~pIg~~~--~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~ 205 (697)
T COG0480 132 ILFVNKMDRLG----ADFYLVVEQLKERLGANPVPVQLPIGAEE--EFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEI 205 (697)
T ss_pred EEEEECccccc----cChhhhHHHHHHHhCCCceeeeccccCcc--ccCceeEhhhcCeEEEcCCcccceeeCCHHHHhH
Confidence 89999996554 46778889999999886666777888755 46654 67777777776 3333321124333333
Q ss_pred HHHHHhcCCCcEEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeC
Q psy2401 222 LKIYAHNQNIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTV 285 (363)
Q Consensus 222 i~~~~~~~~~~~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~ 285 (363)
..++ +..+.+.+++.+++.++.||++..++.+.+.+.+++......+++++..
T Consensus 206 ~~e~-----------r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~~~~~~~~~~pvl~g 258 (697)
T COG0480 206 AEEA-----------REKLLEALAEFDEELMEKYLEGEEPTEEEIKKALRKGTIAGKIVPVLCG 258 (697)
T ss_pred HHHH-----------HHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHHHHhhhccceeeEEee
Confidence 3344 6778888999999999999999988889999999988888889988876
No 153
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.53 E-value=1.1e-13 Score=122.84 Aligned_cols=85 Identities=28% Similarity=0.277 Sum_probs=58.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC--ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK--ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~--~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
++|+++|++|||||||+|+|++.. ...++.+++|..+.... + + .++.+|||||+....
T Consensus 25 ~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~-----------------~~l~l~DtpG~~~~~ 84 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-N-----------------DKLRLVDLPGYGYAK 84 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-C-----------------CeEEEeCCCCCCCcC
Confidence 689999999999999999999863 55677777776544322 1 2 468999999975422
Q ss_pred Ccc------cchhhHHHhhccccCEEEEEEecc
Q psy2401 81 SKG------EGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 81 ~~~------~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
... ..+...++.....++++++|+|+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 117 (196)
T PRK00454 85 VSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSR 117 (196)
T ss_pred CCchHHHHHHHHHHHHHHhCccceEEEEEEecC
Confidence 111 112233444555667888999874
No 154
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.53 E-value=2.3e-13 Score=114.64 Aligned_cols=86 Identities=22% Similarity=0.300 Sum_probs=67.3
Q ss_pred EEeCCCCcHHHHHHHHHcCCcc-ccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcccc
Q psy2401 7 LIGLPNVGKSTLFNALTKLKIS-AENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKGEG 85 (363)
Q Consensus 7 lvG~~g~GKSTL~n~Lt~~~~~-~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~ 85 (363)
++|++|||||||+|+|++.... .++.+++|..+........+. ..+.+|||||+.........
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~Dt~g~~~~~~~~~~ 64 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPL----------------GPVVLIDTPGIDEAGGLGRE 64 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCC----------------CcEEEEECCCCCccccchhh
Confidence 5899999999999999987544 778888888888777666531 57999999999876654443
Q ss_pred hhhHHHhhccccCEEEEEEeccc
Q psy2401 86 LGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 86 l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
........++.+|++++|+|+..
T Consensus 65 ~~~~~~~~~~~~d~il~v~~~~~ 87 (163)
T cd00880 65 REELARRVLERADLILFVVDADL 87 (163)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCC
Confidence 33455567789999999999953
No 155
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.53 E-value=1.7e-13 Score=119.54 Aligned_cols=83 Identities=17% Similarity=0.167 Sum_probs=57.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCcee-ecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCT-IEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t-~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.||+++|.+|||||||++++++....+.+|..|+ .......+.+++.. ..+.+||++|......
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~---------------~~l~~~d~~g~~~~~~ 69 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQE---------------KYLILREVGEDEVAIL 69 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeE---------------EEEEEEecCCcccccc
Confidence 6899999999999999999998765424443333 22223446666643 5688999998754432
Q ss_pred cccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 70 -------~~~~~~~~~d~~llv~d~~ 88 (169)
T cd01892 70 -------LNDAELAACDVACLVYDSS 88 (169)
T ss_pred -------cchhhhhcCCEEEEEEeCC
Confidence 1123458999999999984
No 156
>KOG0092|consensus
Probab=99.53 E-value=1.9e-13 Score=118.40 Aligned_cols=151 Identities=20% Similarity=0.186 Sum_probs=101.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.|++|+|..|||||||+-+.....+...--|.+-...-.-.+.+++.. .++.+|||+|..++.+.
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~---------------ikfeIWDTAGQERy~sl 70 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNT---------------IKFEIWDTAGQERYHSL 70 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcE---------------EEEEEEEcCCccccccc
Confidence 689999999999999999988765443222222222223345666543 78999999999876553
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
.. .+.|+|+++|+|.|+.+ .
T Consensus 71 ap-------MYyRgA~AAivvYDit~-----------------------------------------------------~ 90 (200)
T KOG0092|consen 71 AP-------MYYRGANAAIVVYDITD-----------------------------------------------------E 90 (200)
T ss_pred cc-------ceecCCcEEEEEEeccc-----------------------------------------------------H
Confidence 32 56699999999999842 2
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEE--EeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPII--FVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKL 240 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i--~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~ 240 (363)
+.+++++.|+.+ +......-++ +|+||+|+........++.+.++.+.|..++.+||++
T Consensus 91 ~SF~~aK~Wvke-------------------L~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKT 151 (200)
T KOG0092|consen 91 ESFEKAKNWVKE-------------------LQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKT 151 (200)
T ss_pred HHHHHHHHHHHH-------------------HHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEeccc
Confidence 445556665542 1111122233 3789999742234567888899999999999999996
Q ss_pred HHHHhcC
Q psy2401 241 EEEISDL 247 (363)
Q Consensus 241 e~~i~el 247 (363)
..++.++
T Consensus 152 g~Nv~~i 158 (200)
T KOG0092|consen 152 GENVNEI 158 (200)
T ss_pred ccCHHHH
Confidence 6555444
No 157
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.52 E-value=8.9e-14 Score=120.69 Aligned_cols=78 Identities=23% Similarity=0.298 Sum_probs=53.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKG 83 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 83 (363)
+|+++|++|||||||++.+++........| |.......+...+ .++.+||+||......
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~p--t~g~~~~~i~~~~-----------------~~l~i~Dt~G~~~~~~-- 59 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVP--TTGFNSVAIPTQD-----------------AIMELLEIGGSQNLRK-- 59 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccc--cCCcceEEEeeCC-----------------eEEEEEECCCCcchhH--
Confidence 479999999999999999997643322222 2222222233322 6899999999754332
Q ss_pred cchhhHHHhhccccCEEEEEEecc
Q psy2401 84 EGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 84 ~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
....+++++|++++|+|++
T Consensus 60 -----~~~~~~~~ad~ii~V~D~t 78 (164)
T cd04162 60 -----YWKRYLSGSQGLIFVVDSA 78 (164)
T ss_pred -----HHHHHHhhCCEEEEEEECC
Confidence 3335679999999999985
No 158
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.52 E-value=1.4e-13 Score=121.63 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=54.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||.++|.+|||||||++.++..... ...| |...+...+...+ ..+++||+||.....
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~p--t~g~~~~~~~~~~-----------------~~~~i~D~~Gq~~~~-- 75 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDKIR-- 75 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCc-cccC--CcceeEEEEEECC-----------------EEEEEEECCCCHHHH--
Confidence 68999999999999999999864322 2222 3333333344444 679999999964321
Q ss_pred ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
......++++|++++|+|+++
T Consensus 76 -----~~~~~~~~~a~~iI~V~D~s~ 96 (181)
T PLN00223 76 -----PLWRHYFQNTQGLIFVVDSND 96 (181)
T ss_pred -----HHHHHHhccCCEEEEEEeCCc
Confidence 223345689999999999853
No 159
>KOG0078|consensus
Probab=99.52 E-value=9.4e-14 Score=122.27 Aligned_cols=164 Identities=20% Similarity=0.104 Sum_probs=115.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+|+.++|.+|||||+++-++....+..+.....-++.....+.+++.+ ..+++|||+|..++..
T Consensus 13 ~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~---------------i~lQiWDtaGQerf~t- 76 (207)
T KOG0078|consen 13 FKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKK---------------IKLQIWDTAGQERFRT- 76 (207)
T ss_pred EEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeE---------------EEEEEEEcccchhHHH-
Confidence 689999999999999999998754443333333455556667777755 7899999999876554
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
.+.+++|.|+.+++|+|....
T Consensus 77 ------i~~sYyrgA~gi~LvyDitne----------------------------------------------------- 97 (207)
T KOG0078|consen 77 ------ITTAYYRGAMGILLVYDITNE----------------------------------------------------- 97 (207)
T ss_pred ------HHHHHHhhcCeeEEEEEccch-----------------------------------------------------
Confidence 667888999999999998531
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
..++.+..|++. ++... -...|.++|+||.|.........++-++++.++|..++.+||+...
T Consensus 98 ~Sfeni~~W~~~----------------I~e~a-~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~ 160 (207)
T KOG0078|consen 98 KSFENIRNWIKN----------------IDEHA-SDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNF 160 (207)
T ss_pred HHHHHHHHHHHH----------------HHhhC-CCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCC
Confidence 122333333331 11111 1367889999999975322334566777788899999999999988
Q ss_pred HHhcCCHHHHHHHHhh
Q psy2401 243 EISDLNNIDKKFFLDN 258 (363)
Q Consensus 243 ~i~el~~~~~~~~l~~ 258 (363)
+|.+..-.+.++.+..
T Consensus 161 NI~eaF~~La~~i~~k 176 (207)
T KOG0078|consen 161 NIEEAFLSLARDILQK 176 (207)
T ss_pred CHHHHHHHHHHHHHhh
Confidence 8877655555555543
No 160
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.52 E-value=2.6e-13 Score=119.11 Aligned_cols=82 Identities=20% Similarity=0.247 Sum_probs=55.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|.+|||||||++.+...... .+|..|........+.+++.. ..+++|||||..+...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~- 64 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNYAVTVMIGGEP---------------YTLGLFDTAGQEDYDR- 64 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeeEEEEEECCEE---------------EEEEEEECCCccchhh-
Confidence 58999999999999999999975543 233222222222234555532 6789999999765432
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+ ....++.+|++++|+|+.
T Consensus 65 ---~---~~~~~~~a~~~ilv~d~~ 83 (175)
T cd01874 65 ---L---RPLSYPQTDVFLVCFSVV 83 (175)
T ss_pred ---h---hhhhcccCCEEEEEEECC
Confidence 1 123568999999999985
No 161
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.52 E-value=1.9e-13 Score=124.48 Aligned_cols=83 Identities=14% Similarity=-0.004 Sum_probs=54.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.+|||||||+++++.........|....+.....+..++.. ..+.+|||||...+..
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~- 77 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK---------------IRFYCWDTAGQEKFGG- 77 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeE---------------EEEEEEECCCchhhhh-
Confidence 699999999999999999987654332222211111122223333322 6799999999765432
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+ ....++.+|++|+|+|.+
T Consensus 78 ---~---~~~~~~~~~~~ilvfD~~ 96 (219)
T PLN03071 78 ---L---RDGYYIHGQCAIIMFDVT 96 (219)
T ss_pred ---h---hHHHcccccEEEEEEeCC
Confidence 1 123468999999999985
No 162
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.52 E-value=4.9e-13 Score=115.72 Aligned_cols=82 Identities=21% Similarity=0.191 Sum_probs=55.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|++|||||||+++|++........|.. .+.....+..++.. ..+++||+||.......
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------------~~l~~~D~~g~~~~~~~ 64 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTV-FDNYSATVTVDGKQ---------------VNLGLWDTAGQEEYDRL 64 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeEEEEEECCEE---------------EEEEEEeCCCccccccc
Confidence 589999999999999999999875533333322 12222333444422 57899999997654221
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
....++.+|++++|+|+.
T Consensus 65 -------~~~~~~~~~~~i~v~d~~ 82 (171)
T cd00157 65 -------RPLSYPNTDVFLICFSVD 82 (171)
T ss_pred -------chhhcCCCCEEEEEEECC
Confidence 112347899999999984
No 163
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.52 E-value=2.4e-13 Score=119.23 Aligned_cols=78 Identities=19% Similarity=0.237 Sum_probs=53.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|.+|||||||++.+..... ....| |...+...+.+.+ ..+.+|||||......
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~~-~~~~~--t~~~~~~~~~~~~-----------------~~l~l~D~~G~~~~~~- 72 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGES-VTTIP--TIGFNVETVTYKN-----------------ISFTVWDVGGQDKIRP- 72 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC-CCcCC--ccccceEEEEECC-----------------EEEEEEECCCChhhHH-
Confidence 6899999999999999999964332 12223 3233333344433 6799999999754322
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 73 ------~~~~~~~~ad~ii~v~D~t 91 (175)
T smart00177 73 ------LWRHYYTNTQGLIFVVDSN 91 (175)
T ss_pred ------HHHHHhCCCCEEEEEEECC
Confidence 2234468999999999985
No 164
>PRK13351 elongation factor G; Reviewed
Probab=99.52 E-value=1.6e-13 Score=144.82 Aligned_cols=225 Identities=17% Similarity=0.151 Sum_probs=149.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCc---c---------ccC------CCceeecceeEEEEeCCcccccccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKI---S---------AEN------YPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIF 64 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~---~---------~~~------~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~ 64 (363)
.+|+++|+.|+|||||+++|+.... . ..+ ..+.|+......+.+.+
T Consensus 9 rni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~---------------- 72 (687)
T PRK13351 9 RNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN---------------- 72 (687)
T ss_pred cEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC----------------
Confidence 5899999999999999999974311 0 111 12445555556666665
Q ss_pred ceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHh-h
Q psy2401 65 PAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEK-Y 143 (363)
Q Consensus 65 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~-~ 143 (363)
..+++|||||..++. ......++.+|++++|+|+.++.. ..++..|..+..... .
T Consensus 73 -~~i~liDtPG~~df~-------~~~~~~l~~aD~~ilVvd~~~~~~----------------~~~~~~~~~~~~~~~p~ 128 (687)
T PRK13351 73 -HRINLIDTPGHIDFT-------GEVERSLRVLDGAVVVFDAVTGVQ----------------PQTETVWRQADRYGIPR 128 (687)
T ss_pred -EEEEEEECCCcHHHH-------HHHHHHHHhCCEEEEEEeCCCCCC----------------HHHHHHHHHHHhcCCCE
Confidence 789999999986533 245567799999999999964321 112333434433334 3
Q ss_pred hhhhhcccccCCchhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhh-cccccccEEEec-cc----cccCCCchH
Q psy2401 144 IDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFL-NLLTIKPIIFVA-NV----KENGFKNNL 217 (363)
Q Consensus 144 ~~~i~k~~~~g~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~-~~l~~kp~i~v~-Nk----~d~~~~~~~ 217 (363)
+..+||+++.+ .+...+++++++.|.....+.++|+..+. .+.++ ++...+...+-. +. ...+ .+..
T Consensus 129 iiviNK~D~~~----~~~~~~~~~i~~~l~~~~~~~~~P~~~~~--~~~g~id~~~~~~~~~~~~~~~~~~~~~~-~~~~ 201 (687)
T PRK13351 129 LIFINKMDRVG----ADLFKVLEDIEERFGKRPLPLQLPIGSED--GFEGVVDLITEPELHFSEGDGGSTVEEGP-IPEE 201 (687)
T ss_pred EEEEECCCCCC----CCHHHHHHHHHHHHCCCeEEEEeccccCC--ceEEEEECccceEEecccCCCCCceEEcc-CCHH
Confidence 56788886543 34667889999999876666666776544 34445 444444443321 10 0011 2344
Q ss_pred HHHHHHHHHhcCCCcEEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeC
Q psy2401 218 LLDQLKIYAHNQNIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTV 285 (363)
Q Consensus 218 ~~~~i~~~~~~~~~~~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~ 285 (363)
..+.+.++ ..++-+.+++.+++++++||++..++.+.+...++.++..-.++|+|..
T Consensus 202 ~~~~~~~~-----------~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~~~~~~~~~~~PV~~g 258 (687)
T PRK13351 202 LLEEVEEA-----------REKLIEALAEFDDELLELYLEGEELSAEQLRAPLREGTRSGHLVPVLFG 258 (687)
T ss_pred HHHHHHHH-----------HHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEec
Confidence 45555444 3456777889999999999998888888999999988888899999965
No 165
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.51 E-value=1.7e-13 Score=119.21 Aligned_cols=77 Identities=19% Similarity=0.184 Sum_probs=54.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKG 83 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 83 (363)
+|+++|++|||||||++.+++. ..... ..|...+...+.+.+ ..+++||+||.....
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~--~~t~g~~~~~~~~~~-----------------~~~~i~D~~G~~~~~--- 57 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKV--APTVGFTPTKLRLDK-----------------YEVCIFDLGGGANFR--- 57 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccc--cCcccceEEEEEECC-----------------EEEEEEECCCcHHHH---
Confidence 4899999999999999999985 21111 123344444555544 679999999964322
Q ss_pred cchhhHHHhhccccCEEEEEEecc
Q psy2401 84 EGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 84 ~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....+++++|++++|+|++
T Consensus 58 ----~~~~~~~~~a~~ii~V~D~s 77 (167)
T cd04161 58 ----GIWVNYYAEAHGLVFVVDSS 77 (167)
T ss_pred ----HHHHHHHcCCCEEEEEEECC
Confidence 23456779999999999985
No 166
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.51 E-value=3e-13 Score=117.72 Aligned_cols=80 Identities=20% Similarity=0.158 Sum_probs=53.5
Q ss_pred EEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCccc
Q psy2401 5 CGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKGE 84 (363)
Q Consensus 5 i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~ 84 (363)
|+++|.+|||||||++++.+........|. ........+.+++.. ..+.+|||||.......
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~~-- 62 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPT-VFENYSADVEVDGKP---------------VELGLWDTAGQEDYDRL-- 62 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCc-EEeeeeEEEEECCEE---------------EEEEEEECCCCcccchh--
Confidence 579999999999999999986543332232 222222334444432 57899999997543321
Q ss_pred chhhHHHhhccccCEEEEEEecc
Q psy2401 85 GLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 85 ~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
....++.+|++++|+|++
T Consensus 63 -----~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 63 -----RPLSYPDTDVFLICFSVD 80 (174)
T ss_pred -----chhhcCCCCEEEEEEECC
Confidence 113457899999999984
No 167
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.51 E-value=7.2e-14 Score=124.07 Aligned_cols=82 Identities=23% Similarity=0.272 Sum_probs=59.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcccc------------------CCCceeecceeEEEE--eCCcccccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAE------------------NYPFCTIEPNIGIIE--VPDKRLKHLNNIVKTKK 62 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~------------------~~p~~t~~~~~g~v~--~~~~~~~~l~~~~~~~~ 62 (363)
++|+++|+.++|||||+++|+....... ...+.|.+....... ..+
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~-------------- 69 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENN-------------- 69 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESS--------------
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccc--------------
Confidence 5799999999999999999985421110 113445555555555 333
Q ss_pred ccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 63 IFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 63 ~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
..++++||||..+ +.......++.+|++++|||+.+
T Consensus 70 ---~~i~~iDtPG~~~-------f~~~~~~~~~~~D~ailvVda~~ 105 (188)
T PF00009_consen 70 ---RKITLIDTPGHED-------FIKEMIRGLRQADIAILVVDAND 105 (188)
T ss_dssp ---EEEEEEEESSSHH-------HHHHHHHHHTTSSEEEEEEETTT
T ss_pred ---cceeecccccccc-------eeecccceecccccceeeeeccc
Confidence 7899999999753 33466677899999999999954
No 168
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.51 E-value=1.4e-13 Score=121.54 Aligned_cols=82 Identities=20% Similarity=0.167 Sum_probs=54.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeC-CccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVP-DKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~-~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
+||+++|.+|||||||++++.+........| ++.......+... +.. ..+.+|||||......
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~-t~~~~~~~~i~~~~~~~---------------~~l~i~Dt~G~~~~~~ 64 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVP-TVFENYVTNIQGPNGKI---------------IELALWDTAGQEEYDR 64 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCC-eeeeeeEEEEEecCCcE---------------EEEEEEECCCchhHHH
Confidence 5899999999999999999998654322222 2222222234443 221 5789999999643221
Q ss_pred cccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 65 -------~~~~~~~~ad~ii~v~d~~ 83 (187)
T cd04132 65 -------LRPLSYPDVDVLLICYAVD 83 (187)
T ss_pred -------HHHHhCCCCCEEEEEEECC
Confidence 1223568899999999985
No 169
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.51 E-value=1.1e-13 Score=140.96 Aligned_cols=156 Identities=18% Similarity=0.138 Sum_probs=100.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC---Ccccc-------------CC------CceeecceeEEEEeCCcccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL---KISAE-------------NY------PFCTIEPNIGIIEVPDKRLKHLNNIVKT 60 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~---~~~~~-------------~~------p~~t~~~~~g~v~~~~~~~~~l~~~~~~ 60 (363)
++|+|+|++|+|||||+++|+.. ....+ ++ .+.|+......+.+++
T Consensus 11 Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~------------ 78 (526)
T PRK00741 11 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRD------------ 78 (526)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECC------------
Confidence 58999999999999999999632 11111 11 1222333333444444
Q ss_pred ccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHH
Q psy2401 61 KKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAIL 140 (363)
Q Consensus 61 ~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~ 140 (363)
.++++|||||..++.. .....++.+|++++|+|+.++. ....+..+..+...
T Consensus 79 -----~~inliDTPG~~df~~-------~~~~~l~~aD~aIlVvDa~~gv----------------~~~t~~l~~~~~~~ 130 (526)
T PRK00741 79 -----CLINLLDTPGHEDFSE-------DTYRTLTAVDSALMVIDAAKGV----------------EPQTRKLMEVCRLR 130 (526)
T ss_pred -----EEEEEEECCCchhhHH-------HHHHHHHHCCEEEEEEecCCCC----------------CHHHHHHHHHHHhc
Confidence 7899999999865432 5566778999999999996431 11234444444333
Q ss_pred Hh-hhhhhhcccccCCchhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhh-cccccccEEE
Q psy2401 141 EK-YIDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFL-NLLTIKPIIF 204 (363)
Q Consensus 141 ~~-~~~~i~k~~~~g~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~-~~l~~kp~i~ 204 (363)
.. .+..+||+++.+ .+..++++++++.|.....+...|++.++ .++++ ++++.+.+.|
T Consensus 131 ~iPiiv~iNK~D~~~----a~~~~~l~~i~~~l~~~~~p~~~Pig~~~--~f~Gvvdl~~~~~~~~ 190 (526)
T PRK00741 131 DTPIFTFINKLDRDG----REPLELLDEIEEVLGIACAPITWPIGMGK--RFKGVYDLYNDEVELY 190 (526)
T ss_pred CCCEEEEEECCcccc----cCHHHHHHHHHHHhCCCCeeEEeccccCC--ceeEEEEeecceeeec
Confidence 44 357889985433 23567788888888876667777887665 56666 6666666555
No 170
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.50 E-value=2.5e-13 Score=116.70 Aligned_cols=148 Identities=20% Similarity=0.244 Sum_probs=94.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKG 83 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 83 (363)
||+++|.+|||||||++.+.+........|....+.....+..++.. ..+++||++|.....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~D~~g~~~~~--- 62 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKP---------------VNLEIWDTSGQERFD--- 62 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEE---------------EEEEEEEETTSGGGH---
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccc---------------ccccccccccccccc---
Confidence 79999999999999999999865443333322234445556666543 789999999853221
Q ss_pred cchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHHH
Q psy2401 84 EGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELLK 163 (363)
Q Consensus 84 ~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~~ 163 (363)
.+ ....++++|++++|+|..+. +
T Consensus 63 -~~---~~~~~~~~~~~ii~fd~~~~-----------------------------------------------------~ 85 (162)
T PF00071_consen 63 -SL---RDIFYRNSDAIIIVFDVTDE-----------------------------------------------------E 85 (162)
T ss_dssp -HH---HHHHHTTESEEEEEEETTBH-----------------------------------------------------H
T ss_pred -cc---cccccccccccccccccccc-----------------------------------------------------c
Confidence 11 12345889999999998421 2
Q ss_pred HHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHHH
Q psy2401 164 LLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEEE 243 (363)
Q Consensus 164 ~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~~ 243 (363)
.++.+..|++ .+..+.. ...|+++++||.|......-..++.++++.+++.+++.+||+...+
T Consensus 86 S~~~~~~~~~----------------~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~ 148 (162)
T PF00071_consen 86 SFENLKKWLE----------------EIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGEN 148 (162)
T ss_dssp HHHTHHHHHH----------------HHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTT
T ss_pred cccccccccc----------------ccccccc-ccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCC
Confidence 2233333332 1121211 3579999999999642112234567777888889999999985433
No 171
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.50 E-value=3.3e-13 Score=119.24 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=55.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
..||+++|++|||||||++.+...... ...| |...+...+...+ ..+.+|||||.....
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~-~~~~--T~~~~~~~~~~~~-----------------~~~~l~D~~G~~~~~- 75 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVV-TTIP--TIGFNVETVEYKN-----------------LKFTMWDVGGQDKLR- 75 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--ccccceEEEEECC-----------------EEEEEEECCCCHhHH-
Confidence 368999999999999999999754322 1223 3334444455444 679999999964322
Q ss_pred cccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
......++.+|++++|+|++
T Consensus 76 ------~~~~~~~~~ad~iI~v~D~t 95 (182)
T PTZ00133 76 ------PLWRHYYQNTNGLIFVVDSN 95 (182)
T ss_pred ------HHHHHHhcCCCEEEEEEeCC
Confidence 12334568999999999985
No 172
>KOG0080|consensus
Probab=99.50 E-value=1.9e-13 Score=114.89 Aligned_cols=170 Identities=16% Similarity=0.111 Sum_probs=110.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||.+||.+|+|||||+-.++...+....-.....+.....+.+++.+ .++.+|||+|..++..
T Consensus 12 ~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~---------------~KlaiWDTAGqErFRt- 75 (209)
T KOG0080|consen 12 FKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKR---------------LKLAIWDTAGQERFRT- 75 (209)
T ss_pred EEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCce---------------EEEEEEeccchHhhhc-
Confidence 799999999999999999998764432221223345556678888876 7899999999877665
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
..-++.|.|..+|+|.|....
T Consensus 76 ------LTpSyyRgaqGiIlVYDVT~R----------------------------------------------------- 96 (209)
T KOG0080|consen 76 ------LTPSYYRGAQGIILVYDVTSR----------------------------------------------------- 96 (209)
T ss_pred ------cCHhHhccCceeEEEEEccch-----------------------------------------------------
Confidence 233566999999999998531
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
+++.++.-|+.+ +..|.--...-.++|+||.|......--.++=.+++++++.-++.+||+..+
T Consensus 97 dtf~kLd~W~~E----------------ld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~ 160 (209)
T KOG0080|consen 97 DTFVKLDIWLKE----------------LDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRE 160 (209)
T ss_pred hhHHhHHHHHHH----------------HHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhc
Confidence 111111122221 1112111112224589999964211112233345667778889999999999
Q ss_pred HHhcCCHHHHHHHHhhcCCCc
Q psy2401 243 EISDLNNIDKKFFLDNLGLKE 263 (363)
Q Consensus 243 ~i~el~~~~~~~~l~~~~l~~ 263 (363)
++..-.+|+.++.++..++.+
T Consensus 161 ~V~~~FeelveKIi~tp~l~~ 181 (209)
T KOG0080|consen 161 NVQCCFEELVEKIIETPSLWE 181 (209)
T ss_pred cHHHHHHHHHHHHhcCcchhh
Confidence 988888888887777665544
No 173
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.50 E-value=4.3e-13 Score=138.07 Aligned_cols=84 Identities=20% Similarity=0.198 Sum_probs=65.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
+.+|+++|++|+|||||+++|.+.......+++.|.+.....+.+++. ..+.+|||||...+..
T Consensus 87 ~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~----------------~~i~~iDTPGhe~F~~ 150 (587)
T TIGR00487 87 PPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG----------------KMITFLDTPGHEAFTS 150 (587)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC----------------cEEEEEECCCCcchhh
Confidence 468999999999999999999987766667788887776666666552 3789999999765433
Q ss_pred cccchhhHHHhhccccCEEEEEEeccc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.....++.+|++++|+|+.+
T Consensus 151 -------~r~rga~~aDiaILVVda~d 170 (587)
T TIGR00487 151 -------MRARGAKVTDIVVLVVAADD 170 (587)
T ss_pred -------HHHhhhccCCEEEEEEECCC
Confidence 22345688999999999853
No 174
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.49 E-value=8.8e-13 Score=114.77 Aligned_cols=82 Identities=21% Similarity=0.251 Sum_probs=55.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|++|+|||||++++++.... ..+..+..+.....+.+++.. ..+.+|||||.......
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~~ 64 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTVGGKQ---------------YLLGLYDTAGQEDYDRL 64 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeEEEEEECCEE---------------EEEEEEeCCCccccccc
Confidence 58999999999999999999986543 222222222223345555532 56889999997654332
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.. ..++.+|++++|+|..
T Consensus 65 ~~-------~~~~~~~~~ilv~~~~ 82 (174)
T cd04135 65 RP-------LSYPMTDVFLICFSVV 82 (174)
T ss_pred cc-------ccCCCCCEEEEEEECC
Confidence 11 2357899999999984
No 175
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.49 E-value=3.1e-13 Score=123.07 Aligned_cols=78 Identities=24% Similarity=0.237 Sum_probs=53.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.+|||||||++.+.+.... ...| |+........+.. ..+.+|||||...+..
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~-~~~~--Tig~~~~~~~~~~-----------------~~l~iwDt~G~e~~~~- 59 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK-DTVS--TVGGAFYLKQWGP-----------------YNISIWDTAGREQFHG- 59 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC-CCCC--ccceEEEEEEeeE-----------------EEEEEEeCCCcccchh-
Confidence 58999999999999999999986543 1222 3222222222221 6789999999754332
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+.. ..++.+|++|+|+|++
T Consensus 60 ---l~~---~~~~~ad~~IlV~Dvt 78 (220)
T cd04126 60 ---LGS---MYCRGAAAVILTYDVS 78 (220)
T ss_pred ---hHH---HHhccCCEEEEEEECC
Confidence 222 3468999999999985
No 176
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.49 E-value=2.7e-13 Score=122.00 Aligned_cols=98 Identities=19% Similarity=0.089 Sum_probs=55.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc---ccCCCceeecceeEEEEeCCc---c---cc-----cccc--cc---ccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS---AENYPFCTIEPNIGIIEVPDK---R---LK-----HLNN--IV---KTKKI 63 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~---~~~~p~~t~~~~~g~v~~~~~---~---~~-----~l~~--~~---~~~~~ 63 (363)
.+||++|++|+|||||+.+|++.... ..-..+.|.........+.-. + .. .... .+ .+...
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 47999999999999999999874211 011112222222222222100 0 00 0000 00 00011
Q ss_pred cceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecc
Q psy2401 64 FPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 64 ~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
...++.+|||||.. .+...++..++.+|++++|+|+.
T Consensus 81 ~~~~i~~iDtPG~~-------~~~~~~~~~~~~~D~~llVvd~~ 117 (203)
T cd01888 81 LVRHVSFVDCPGHE-------ILMATMLSGAAVMDGALLLIAAN 117 (203)
T ss_pred cccEEEEEECCChH-------HHHHHHHHhhhcCCEEEEEEECC
Confidence 12579999999953 24457778888999999999995
No 177
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.49 E-value=7e-13 Score=116.71 Aligned_cols=82 Identities=18% Similarity=0.238 Sum_probs=56.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.|++++|.+|+|||||+..+..........| |........+.+++.. ..+++|||+|..++...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~-Ti~~~~~~~~~~~~~~---------------v~l~i~Dt~G~~~~~~~ 65 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVSVDGNT---------------VNLGLWDTAGQEDYNRL 65 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCC-cceeeeEEEEEECCEE---------------EEEEEEECCCCcccccc
Confidence 5899999999999999999997655333223 2112122234455433 67999999997654432
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. ...++++|++++|+|..
T Consensus 66 ~-------~~~~~~a~~~ilvyd~~ 83 (176)
T cd04133 66 R-------PLSYRGADVFVLAFSLI 83 (176)
T ss_pred c-------hhhcCCCcEEEEEEEcC
Confidence 1 23568999999999985
No 178
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.48 E-value=3.1e-13 Score=124.02 Aligned_cols=82 Identities=18% Similarity=0.149 Sum_probs=55.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|.+|||||||++.+.+........|... ......+.+++.. ..+++|||+|...+..
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~-~~~~~~i~~~~~~---------------v~l~iwDTaG~e~~~~- 76 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVF-ENYTAGLETEEQR---------------VELSLWDTSGSPYYDN- 76 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcCCCCCCcCCcee-eeeEEEEEECCEE---------------EEEEEEeCCCchhhHH-
Confidence 6899999999999999999997644322223211 1112234555543 6799999999643322
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++++|++++|+|++
T Consensus 77 ------~~~~~~~~ad~vIlVyDit 95 (232)
T cd04174 77 ------VRPLCYSDSDAVLLCFDIS 95 (232)
T ss_pred ------HHHHHcCCCcEEEEEEECC
Confidence 2224568999999999985
No 179
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.48 E-value=1e-12 Score=113.51 Aligned_cols=76 Identities=18% Similarity=0.093 Sum_probs=51.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.+|||||||++.+....... .++. +.......+.+++.. ..+.+|||+|...
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~-~~~~-~~~~~~~~i~~~~~~---------------~~l~i~D~~g~~~---- 59 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQ-LESP-EGGRFKKEVLVDGQS---------------HLLLIRDEGGAPD---- 59 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCC-CCCC-CccceEEEEEECCEE---------------EEEEEEECCCCCc----
Confidence 489999999999999999877543321 1221 112223446666632 6789999999732
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. ...+.+|++++|+|.+
T Consensus 60 -----~---~~~~~~~~~ilv~d~~ 76 (158)
T cd04103 60 -----A---QFASWVDAVIFVFSLE 76 (158)
T ss_pred -----h---hHHhcCCEEEEEEECC
Confidence 1 2347799999999985
No 180
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.48 E-value=2.9e-13 Score=119.27 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=55.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.+|||||||++.+.+........| |........+.+++.. ..+++|||||...+..
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~-t~~~~~~~~~~~~~~~---------------~~l~iwDt~G~~~~~~- 64 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVP-TVFENYTASFEIDEQR---------------IELSLWDTSGSPYYDN- 64 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCC-ceEEEEEEEEEECCEE---------------EEEEEEECCCchhhhh-
Confidence 5899999999999999999998644322222 2111112234555543 6799999999654322
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+ ....++++|++++|+|.+
T Consensus 65 ---~---~~~~~~~a~~~ilvfdit 83 (178)
T cd04131 65 ---V---RPLCYPDSDAVLICFDIS 83 (178)
T ss_pred ---c---chhhcCCCCEEEEEEECC
Confidence 1 123568999999999985
No 181
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.48 E-value=1e-12 Score=113.95 Aligned_cols=81 Identities=26% Similarity=0.287 Sum_probs=53.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|.+|||||||++++++.... ..+|.++ ....-...+.+.. ..+++|||||......
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~-~~~~~~~-~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 62 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRVL-PEITIPADVTPER---------------VPTTIVDTSSRPQDRA- 62 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC-ccCCCcc-cceEeeeeecCCe---------------EEEEEEeCCCchhhhH-
Confidence 38999999999999999999986442 2244322 1111112233322 6789999999753221
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 63 ------~~~~~~~~ad~~ilv~d~~ 81 (166)
T cd01893 63 ------NLAAEIRKANVICLVYSVD 81 (166)
T ss_pred ------HHhhhcccCCEEEEEEECC
Confidence 3344568899999999984
No 182
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.48 E-value=8.4e-13 Score=116.81 Aligned_cols=83 Identities=18% Similarity=0.183 Sum_probs=55.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.+||+++|.+|||||||++.+....... .|..|........+.+++.. ..+++|||+|...+..
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~~-~~~pT~~~~~~~~~~~~~~~---------------~~l~iwDtaG~e~~~~ 68 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFPE-NYVPTVFENYTASFEIDTQR---------------IELSLWDTSGSPYYDN 68 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCC-ccCCceeeeeEEEEEECCEE---------------EEEEEEECCCchhhHh
Confidence 3689999999999999999999754432 22222211112234555533 6799999999644322
Q ss_pred cccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++++|++++|+|.+
T Consensus 69 -------~~~~~~~~ad~~ilvyDit 87 (182)
T cd04172 69 -------VRPLSYPDSDAVLICFDIS 87 (182)
T ss_pred -------hhhhhcCCCCEEEEEEECC
Confidence 1124568999999999985
No 183
>KOG0098|consensus
Probab=99.47 E-value=2.9e-13 Score=116.57 Aligned_cols=154 Identities=16% Similarity=0.149 Sum_probs=106.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+|+.++|..|||||.|+...+...+..-.-...-++.....+.+++++ .++++|||+|...+.+
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~---------------IKlqiwDtaGqe~frs- 70 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQ---------------IKLQIWDTAGQESFRS- 70 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCce---------------EEEEEEecCCcHHHHH-
Confidence 689999999999999999999865432222222233444467888865 7899999999876554
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
-..++.|.|-.+|+|.|... .
T Consensus 71 ------v~~syYr~a~GalLVydit~-----------------------------------------------------r 91 (216)
T KOG0098|consen 71 ------VTRSYYRGAAGALLVYDITR-----------------------------------------------------R 91 (216)
T ss_pred ------HHHHHhccCcceEEEEEccc-----------------------------------------------------h
Confidence 34466699999999999832 2
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
+.+..+.+||++ ++... -.+--+++++||+|+.....--.++-+.+++++|..++.+||++.+
T Consensus 92 ~sF~hL~~wL~D----------------~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~ 154 (216)
T KOG0098|consen 92 ESFNHLTSWLED----------------ARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAE 154 (216)
T ss_pred hhHHHHHHHHHH----------------HHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhh
Confidence 344445555542 11111 1344456679999975322334567888999999999999999988
Q ss_pred HHhcCC
Q psy2401 243 EISDLN 248 (363)
Q Consensus 243 ~i~el~ 248 (363)
++.|+.
T Consensus 155 ~VEEaF 160 (216)
T KOG0098|consen 155 NVEEAF 160 (216)
T ss_pred hHHHHH
Confidence 876653
No 184
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.47 E-value=7.1e-13 Score=139.77 Aligned_cols=83 Identities=19% Similarity=0.177 Sum_probs=66.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
+..|+++|+.|+|||||+++|.+..+..+.+++.|.+.....+.+++ ..++||||||...+..
T Consensus 290 ~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~-----------------~~ItfiDTPGhe~F~~ 352 (787)
T PRK05306 290 PPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG-----------------GKITFLDTPGHEAFTA 352 (787)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC-----------------EEEEEEECCCCccchh
Confidence 46799999999999999999998766666778888777766777766 6799999999866533
Q ss_pred cccchhhHHHhhccccCEEEEEEeccc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.....++.+|++++|+|+.+
T Consensus 353 -------m~~rga~~aDiaILVVdAdd 372 (787)
T PRK05306 353 -------MRARGAQVTDIVVLVVAADD 372 (787)
T ss_pred -------HHHhhhhhCCEEEEEEECCC
Confidence 33355688999999999853
No 185
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.47 E-value=1.2e-12 Score=114.34 Aligned_cols=82 Identities=22% Similarity=0.245 Sum_probs=57.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+|++++|.+|+|||||++.+.+... ..+++.++.+.....+.+++.. ..+++|||||.......
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~~ 64 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY-PTEYVPTAFDNFSVVVLVDGKP---------------VRLQLCDTAGQDEFDKL 64 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeeEEEEECCEE---------------EEEEEEECCCChhhccc
Confidence 4899999999999999999987543 3344444433333445555532 67899999997544332
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. -..++.+|++++|+|+.
T Consensus 65 ~-------~~~~~~a~~~i~v~d~~ 82 (173)
T cd04130 65 R-------PLCYPDTDVFLLCFSVV 82 (173)
T ss_pred c-------ccccCCCcEEEEEEECC
Confidence 1 13458899999999985
No 186
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.47 E-value=2e-13 Score=136.24 Aligned_cols=81 Identities=21% Similarity=0.179 Sum_probs=61.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccc-------------------------------cCCCceeecceeEEEEeCCccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISA-------------------------------ENYPFCTIEPNIGIIEVPDKRL 51 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~-------------------------------~~~p~~t~~~~~g~v~~~~~~~ 51 (363)
++|+++|++|+|||||+++|+.....+ .-.+++|++.....+.+++
T Consensus 7 ~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~--- 83 (425)
T PRK12317 7 LNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK--- 83 (425)
T ss_pred EEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC---
Confidence 679999999999999999998431111 0147888888877777766
Q ss_pred cccccccccccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecc
Q psy2401 52 KHLNNIVKTKKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 52 ~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.++.+|||||+.++. ..+...++.+|++++|+|+.
T Consensus 84 --------------~~i~liDtpG~~~~~-------~~~~~~~~~aD~~ilVvDa~ 118 (425)
T PRK12317 84 --------------YYFTIVDCPGHRDFV-------KNMITGASQADAAVLVVAAD 118 (425)
T ss_pred --------------eEEEEEECCCcccch-------hhHhhchhcCCEEEEEEEcc
Confidence 789999999974432 24455678899999999995
No 187
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.47 E-value=1.8e-13 Score=122.39 Aligned_cols=82 Identities=23% Similarity=0.212 Sum_probs=59.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc----------------ccCCCceeecceeEEEEeCCccccccccccccccccce
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS----------------AENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPA 66 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~----------------~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~ 66 (363)
++|+++|++++|||||+++|++.... ..-.+++|++.....+.+.+ .
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~-----------------~ 65 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETAN-----------------R 65 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCC-----------------e
Confidence 68999999999999999999863100 01134556555444444433 6
Q ss_pred eEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 67 IIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 67 ~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
++.++||||+.+ +.......++.+|++++|||+..
T Consensus 66 ~i~~iDtPG~~~-------~~~~~~~~~~~~D~~ilVvda~~ 100 (195)
T cd01884 66 HYAHVDCPGHAD-------YIKNMITGAAQMDGAILVVSATD 100 (195)
T ss_pred EEEEEECcCHHH-------HHHHHHHHhhhCCEEEEEEECCC
Confidence 789999999753 33466778889999999999853
No 188
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.47 E-value=5.9e-13 Score=115.74 Aligned_cols=78 Identities=26% Similarity=0.285 Sum_probs=54.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.+|+++|++|||||||+++|++..... ..| |...+...+.+.+ ..+.+||+||.....
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~--t~g~~~~~i~~~~-----------------~~~~~~D~~G~~~~~-- 72 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDISH-ITP--TQGFNIKTVQSDG-----------------FKLNVWDIGGQRAIR-- 72 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCCcc-cCC--CCCcceEEEEECC-----------------EEEEEEECCCCHHHH--
Confidence 689999999999999999999853211 111 2222333566655 678999999964321
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
......++.+|++++|+|+.
T Consensus 73 -----~~~~~~~~~~~~ii~v~D~~ 92 (173)
T cd04155 73 -----PYWRNYFENTDCLIYVIDSA 92 (173)
T ss_pred -----HHHHHHhcCCCEEEEEEeCC
Confidence 23345568899999999985
No 189
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.47 E-value=7.7e-13 Score=118.26 Aligned_cols=88 Identities=16% Similarity=0.094 Sum_probs=66.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccC--CCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAEN--YPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~--~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
++|+|+|.||||||||+|+|+|.....+. .+++|..++.+...+.+ .++.++||||+.+..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~-----------------~~i~viDTPG~~d~~ 63 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG-----------------RRVNVIDTPGLFDTS 63 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC-----------------eEEEEEECcCCCCcc
Confidence 47999999999999999999998543333 46788888888888877 679999999998754
Q ss_pred Ccccch----hhHHHhhccccCEEEEEEecc
Q psy2401 81 SKGEGL----GNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 81 ~~~~~l----~~~~l~~~~~aD~il~Vvda~ 107 (363)
...+.+ .+.+......+|++++|+++.
T Consensus 64 ~~~~~~~~~i~~~~~~~~~g~~~illVi~~~ 94 (196)
T cd01852 64 VSPEQLSKEIVRCLSLSAPGPHAFLLVVPLG 94 (196)
T ss_pred CChHHHHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 322222 222233346789999999984
No 190
>KOG0394|consensus
Probab=99.47 E-value=3.7e-13 Score=115.69 Aligned_cols=167 Identities=19% Similarity=0.180 Sum_probs=109.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||.|+|.+|+|||||+|.+...+...........+.....+.++++. ..+++|||+|..++.+.
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~---------------vtlQiWDTAGQERFqsL 74 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRS---------------VTLQIWDTAGQERFQSL 74 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeE---------------EEEEEEecccHHHhhhc
Confidence 689999999999999999999765543333333444555667787754 89999999999888875
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
+- .-.|.+|..++|.|..... ..+.++..+.|
T Consensus 75 g~-------aFYRgaDcCvlvydv~~~~----------Sfe~L~~Wr~E------------------------------- 106 (210)
T KOG0394|consen 75 GV-------AFYRGADCCVLVYDVNNPK----------SFENLENWRKE------------------------------- 106 (210)
T ss_pred cc-------ceecCCceEEEEeecCChh----------hhccHHHHHHH-------------------------------
Confidence 42 3449999999999973210 01111111110
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCC--chHHHHHHHHHHhcC-CCcEEEeeHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFK--NNLLLDQLKIYAHNQ-NIPIIIICAK 239 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~--~~~~~~~i~~~~~~~-~~~~i~~sa~ 239 (363)
.|.+.. | .-....|.|+++||.|.+.. .....++.++|+.++ ++|++.+|||
T Consensus 107 --------Fl~qa~-----~------------~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK 161 (210)
T KOG0394|consen 107 --------FLIQAS-----P------------QDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAK 161 (210)
T ss_pred --------HHHhcC-----C------------CCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccc
Confidence 011100 0 11146799999999997631 234567888999876 5899999999
Q ss_pred HHHHHhcCCHHHHHHHHh
Q psy2401 240 LEEEISDLNNIDKKFFLD 257 (363)
Q Consensus 240 ~e~~i~el~~~~~~~~l~ 257 (363)
-..++.+..++-...-|+
T Consensus 162 ~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 162 EATNVDEAFEEIARRALA 179 (210)
T ss_pred ccccHHHHHHHHHHHHHh
Confidence 766665554443333333
No 191
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.46 E-value=4.1e-13 Score=113.13 Aligned_cols=74 Identities=20% Similarity=0.236 Sum_probs=48.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|++|||||||+|++++.... ++ ++ ..+.+. ..+|||||....
T Consensus 1 ~kv~liG~~~vGKSsL~~~l~~~~~~---~~-----~t-~~~~~~--------------------~~~iDt~G~~~~--- 48 (142)
T TIGR02528 1 KRIMFIGSVGCGKTTLTQALQGEEIL---YK-----KT-QAVEYN--------------------DGAIDTPGEYVE--- 48 (142)
T ss_pred CeEEEECCCCCCHHHHHHHHcCCccc---cc-----cc-eeEEEc--------------------CeeecCchhhhh---
Confidence 38999999999999999999985421 11 11 112221 258999997321
Q ss_pred ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
...+.+.....++++|++++|+|+.+
T Consensus 49 ~~~~~~~~~~~~~~ad~vilv~d~~~ 74 (142)
T TIGR02528 49 NRRLYSALIVTAADADVIALVQSATD 74 (142)
T ss_pred hHHHHHHHHHHhhcCCEEEEEecCCC
Confidence 11112233345789999999999853
No 192
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.46 E-value=8.4e-13 Score=111.15 Aligned_cols=82 Identities=30% Similarity=0.285 Sum_probs=61.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|++|||||||+|+|++.....+..|+++.+.....+.+++.. ..+.+||+||..+...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~~~~~~- 65 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKT---------------YKFNLLDTAGQEDYRA- 65 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEE---------------EEEEEEECCCcccchH-
Confidence 689999999999999999999988667777888887777667776632 5688999999544322
Q ss_pred ccchhhHHHhhccccCEEEEEEec
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRC 106 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda 106 (363)
+ .....+.++.++.++|.
T Consensus 66 ---~---~~~~~~~~~~~i~~~d~ 83 (161)
T TIGR00231 66 ---I---RRLYYRAVESSLRVFDI 83 (161)
T ss_pred ---H---HHHHHhhhhEEEEEEEE
Confidence 1 12233567777777776
No 193
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.46 E-value=1.3e-12 Score=116.30 Aligned_cols=82 Identities=23% Similarity=0.246 Sum_probs=54.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.+|||||||++.+..........|... ......+.+++.. ..+++|||||...+..
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~---------------~~l~i~Dt~G~e~~~~- 66 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVF-DNYSAQTAVDGRT---------------VSLNLWDTAGQEEYDR- 66 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceE-eeeEEEEEECCEE---------------EEEEEEECCCchhhhh-
Confidence 7999999999999999999987544322222111 1111223444433 6799999999754432
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+ ....++++|++++|+|+.
T Consensus 67 ---l---~~~~~~~a~~~ilvydit 85 (191)
T cd01875 67 ---L---RTLSYPQTNVFIICFSIA 85 (191)
T ss_pred ---h---hhhhccCCCEEEEEEECC
Confidence 1 123468999999999985
No 194
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.46 E-value=1.9e-12 Score=113.55 Aligned_cols=82 Identities=21% Similarity=0.231 Sum_probs=54.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|.+|||||||+..+..........| +......-.+.+++.. ..+++|||||.......
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~-t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~~ 65 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIP-TVFDNYSANVMVDGKP---------------VNLGLWDTAGQEDYDRL 65 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCC-cceeeeEEEEEECCEE---------------EEEEEEECCCchhhhhh
Confidence 6899999999999999999987544322223 2211112233444432 67899999996543321
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
....++.+|++|+|+|++
T Consensus 66 -------~~~~~~~~d~~ilv~d~~ 83 (174)
T cd01871 66 -------RPLSYPQTDVFLICFSLV 83 (174)
T ss_pred -------hhhhcCCCCEEEEEEECC
Confidence 123568899999999985
No 195
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.45 E-value=9.2e-13 Score=117.00 Aligned_cols=82 Identities=21% Similarity=0.173 Sum_probs=53.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.+|||||||++.+++........|... ......+.+++.+ ..+++|||||......
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~-~~~~~~i~~~~~~---------------~~l~i~Dt~G~~~~~~- 63 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVF-ENYVHDIFVDGLH---------------IELSLWDTAGQEEFDR- 63 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcce-eeeEEEEEECCEE---------------EEEEEEECCCChhccc-
Confidence 5899999999999999999998644322122111 1112233444432 6789999999754332
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+.. ..++.+|++++|+|.+
T Consensus 64 ---l~~---~~~~~a~~~ilv~dv~ 82 (189)
T cd04134 64 ---LRS---LSYADTDVIMLCFSVD 82 (189)
T ss_pred ---ccc---ccccCCCEEEEEEECC
Confidence 111 2458899999999985
No 196
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.45 E-value=2e-12 Score=113.59 Aligned_cols=79 Identities=27% Similarity=0.307 Sum_probs=58.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.+|.++|++||||||+++.|....... . ..|...+...+.+.+ ..+.+||++|......
T Consensus 15 ~~ililGl~~sGKTtll~~l~~~~~~~-~--~pT~g~~~~~i~~~~-----------------~~~~~~d~gG~~~~~~- 73 (175)
T PF00025_consen 15 IKILILGLDGSGKTTLLNRLKNGEISE-T--IPTIGFNIEEIKYKG-----------------YSLTIWDLGGQESFRP- 73 (175)
T ss_dssp EEEEEEESTTSSHHHHHHHHHSSSEEE-E--EEESSEEEEEEEETT-----------------EEEEEEEESSSGGGGG-
T ss_pred EEEEEECCCccchHHHHHHhhhccccc-c--CcccccccceeeeCc-----------------EEEEEEeccccccccc-
Confidence 689999999999999999998743221 2 225566666777777 7899999999643322
Q ss_pred ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
....+++.+|++++|||+++
T Consensus 74 ------~w~~y~~~~~~iIfVvDssd 93 (175)
T PF00025_consen 74 ------LWKSYFQNADGIIFVVDSSD 93 (175)
T ss_dssp ------GGGGGHTTESEEEEEEETTG
T ss_pred ------cceeeccccceeEEEEeccc
Confidence 22245578999999999963
No 197
>KOG0087|consensus
Probab=99.45 E-value=1.1e-12 Score=115.31 Aligned_cols=152 Identities=18% Similarity=0.137 Sum_probs=113.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||++||.+|+|||-|+...+...+.....+..-+++....+.++++. ...++|||+|..++..-
T Consensus 15 FKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~---------------vkaqIWDTAGQERyrAi 79 (222)
T KOG0087|consen 15 FKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKT---------------VKAQIWDTAGQERYRAI 79 (222)
T ss_pred EEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcE---------------EEEeeecccchhhhccc
Confidence 689999999999999999999988877777766777777778888865 78899999998776542
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
.-++.|.|-++++|.|... .
T Consensus 80 -------tSaYYrgAvGAllVYDITr-----------------------------------------------------~ 99 (222)
T KOG0087|consen 80 -------TSAYYRGAVGALLVYDITR-----------------------------------------------------R 99 (222)
T ss_pred -------cchhhcccceeEEEEechh-----------------------------------------------------H
Confidence 2256699999999999841 2
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
.+++.+..||.+ ++.+ .-+..++++|+||+|+.-......++.+.+++.++..++.+||.-..
T Consensus 100 ~Tfenv~rWL~E----------------LRdh-ad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~t 162 (222)
T KOG0087|consen 100 QTFENVERWLKE----------------LRDH-ADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDAT 162 (222)
T ss_pred HHHHHHHHHHHH----------------HHhc-CCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccc
Confidence 345556566652 2222 22577899999999963222335567777778889999999998655
Q ss_pred HHhc
Q psy2401 243 EISD 246 (363)
Q Consensus 243 ~i~e 246 (363)
++..
T Consensus 163 NVe~ 166 (222)
T KOG0087|consen 163 NVEK 166 (222)
T ss_pred cHHH
Confidence 5443
No 198
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.44 E-value=3.4e-13 Score=122.76 Aligned_cols=81 Identities=20% Similarity=0.180 Sum_probs=60.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCC---cc----------------------c------cCCCceeecceeEEEEeCCcccc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLK---IS----------------------A------ENYPFCTIEPNIGIIEVPDKRLK 52 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~---~~----------------------~------~~~p~~t~~~~~g~v~~~~~~~~ 52 (363)
+|+++|++++|||||+.+|.... .. . ....++|++.....+.+.+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~---- 76 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK---- 76 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC----
Confidence 58999999999999999995320 00 0 0124677777777777766
Q ss_pred ccccccccccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 53 HLNNIVKTKKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 53 ~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
..+.+|||||+.++ ...+...++.+|++++|||+.+
T Consensus 77 -------------~~i~liDtpG~~~~-------~~~~~~~~~~~d~~i~VvDa~~ 112 (219)
T cd01883 77 -------------YRFTILDAPGHRDF-------VPNMITGASQADVAVLVVDARK 112 (219)
T ss_pred -------------eEEEEEECCChHHH-------HHHHHHHhhhCCEEEEEEECCC
Confidence 68999999997432 2356677788999999999964
No 199
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.43 E-value=8.9e-13 Score=136.07 Aligned_cols=82 Identities=21% Similarity=0.269 Sum_probs=63.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC---ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK---ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSG 79 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~---~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
+.|+++|++|+|||||+++|++.. ......++.|++.....+.+++ ..+.+||+||..+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~-----------------~~v~~iDtPGhe~- 62 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD-----------------YRLGFIDVPGHEK- 62 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC-----------------EEEEEEECCCHHH-
Confidence 469999999999999999999853 2233456778877766777766 6789999999643
Q ss_pred CCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 80 ASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 80 ~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
+...+...+.++|++++|+|+.+
T Consensus 63 ------f~~~~~~g~~~aD~aILVVDa~~ 85 (581)
T TIGR00475 63 ------FISNAIAGGGGIDAALLVVDADE 85 (581)
T ss_pred ------HHHHHHhhhccCCEEEEEEECCC
Confidence 33466677889999999999954
No 200
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.43 E-value=1.2e-12 Score=137.07 Aligned_cols=85 Identities=20% Similarity=0.171 Sum_probs=62.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeC--CccccccccccccccccceeEEEEeeecccCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVP--DKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSG 79 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~--~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
+..|+++|++|+|||||+++|++.....+..++.|.+.....+.+. +.. ..+.||||||...+
T Consensus 244 ~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~---------------~kItfiDTPGhe~F 308 (742)
T CHL00189 244 PPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDEN---------------QKIVFLDTPGHEAF 308 (742)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCc---------------eEEEEEECCcHHHH
Confidence 3689999999999999999999876555556677766554444442 111 67999999997543
Q ss_pred CCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 80 ASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 80 ~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
. ......++.+|++++|||+.+
T Consensus 309 ~-------~mr~rg~~~aDiaILVVDA~d 330 (742)
T CHL00189 309 S-------SMRSRGANVTDIAILIIAADD 330 (742)
T ss_pred H-------HHHHHHHHHCCEEEEEEECcC
Confidence 2 233356688999999999853
No 201
>KOG0094|consensus
Probab=99.43 E-value=2.4e-12 Score=111.82 Aligned_cols=154 Identities=18% Similarity=0.129 Sum_probs=105.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.|++++|..+||||||++...-..+.-.-.+...++...-.+.+.|.+ ..+++|||+|..++.+
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~---------------vrLQlWDTAGQERFrs- 86 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQERFRS- 86 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcE---------------EEEEEEecccHHHHhh-
Confidence 589999999999999999998655544444555666777778888865 7899999999887766
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
-.-+++|++.+++.|.|..+.
T Consensus 87 ------lipsY~Rds~vaviVyDit~~----------------------------------------------------- 107 (221)
T KOG0094|consen 87 ------LIPSYIRDSSVAVIVYDITDR----------------------------------------------------- 107 (221)
T ss_pred ------hhhhhccCCeEEEEEEecccc-----------------------------------------------------
Confidence 445788999999999998531
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhccccc-ccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTI-KPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLE 241 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~-kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e 241 (363)
..++...+|++.-. + . .-+. .-+++|+||.|+.....-..++-+..+++.+..++.+||+..
T Consensus 108 ~Sfe~t~kWi~dv~---------------~-e-~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g 170 (221)
T KOG0094|consen 108 NSFENTSKWIEDVR---------------R-E-RGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAG 170 (221)
T ss_pred chHHHHHHHHHHHH---------------h-c-cCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCC
Confidence 33445555555211 0 1 0022 233447899997421122333344555667888999999977
Q ss_pred HHHhcCC
Q psy2401 242 EEISDLN 248 (363)
Q Consensus 242 ~~i~el~ 248 (363)
+++.++.
T Consensus 171 ~NVk~lF 177 (221)
T KOG0094|consen 171 ENVKQLF 177 (221)
T ss_pred CCHHHHH
Confidence 6665543
No 202
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.43 E-value=4.8e-12 Score=110.18 Aligned_cols=82 Identities=21% Similarity=0.197 Sum_probs=55.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|++|||||||++++.+..... .+..+........+.+++.+ ..+.+|||||.......
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~~ 65 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYVADIEVDGKQ---------------VELALWDTAGQEDYDRL 65 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccccceEEEEEECCEE---------------EEEEEEeCCCchhhhhc
Confidence 589999999999999999999854332 22222222223455665543 57899999997543221
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. ...++.+|++++|+|+.
T Consensus 66 ~-------~~~~~~~d~~i~v~~~~ 83 (175)
T cd01870 66 R-------PLSYPDTDVILMCFSID 83 (175)
T ss_pred c-------ccccCCCCEEEEEEECC
Confidence 1 13458899999999984
No 203
>KOG0073|consensus
Probab=99.43 E-value=3.1e-12 Score=108.03 Aligned_cols=146 Identities=18% Similarity=0.211 Sum_probs=97.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHcCCcc-ccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCC
Q psy2401 1 MNLKCGLIGLPNVGKSTLFNALTKLKIS-AENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSG 79 (363)
Q Consensus 1 m~~~i~lvG~~g~GKSTL~n~Lt~~~~~-~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
|+++|-++|+.||||||+++++.+.... +++ |...+..++.+++ +++++||+-|....
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~p----t~gf~Iktl~~~~-----------------~~L~iwDvGGq~~l 73 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISP----TLGFQIKTLEYKG-----------------YTLNIWDVGGQKTL 73 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccCC----ccceeeEEEEecc-----------------eEEEEEEcCCcchh
Confidence 3589999999999999999999986422 332 4455556778888 88999999986543
Q ss_pred CCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhH
Q psy2401 80 ASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSI 159 (363)
Q Consensus 80 ~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~ 159 (363)
.+ -..++...+|++++|||.++. .
T Consensus 74 r~-------~W~nYfestdglIwvvDssD~------------~------------------------------------- 97 (185)
T KOG0073|consen 74 RS-------YWKNYFESTDGLIWVVDSSDR------------M------------------------------------- 97 (185)
T ss_pred HH-------HHHHhhhccCeEEEEEECchH------------H-------------------------------------
Confidence 32 333566889999999998531 0
Q ss_pred HHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccC--CCchHHH--HHHHHHHhcCCCcEEE
Q psy2401 160 ELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENG--FKNNLLL--DQLKIYAHNQNIPIII 235 (363)
Q Consensus 160 ~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~--~~~~~~~--~~i~~~~~~~~~~~i~ 235 (363)
...+....+++.|. +| .+..+|+++++||.|.+ +..++.. -.+++.++....+++.
T Consensus 98 r~~e~~~~L~~lL~------------ee--------rlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~ 157 (185)
T KOG0073|consen 98 RMQECKQELTELLV------------EE--------RLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVK 157 (185)
T ss_pred HHHHHHHHHHHHHh------------hh--------hhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEE
Confidence 12233333333332 12 23568999999999976 2222222 2344555667788999
Q ss_pred eeHHHHHH
Q psy2401 236 ICAKLEEE 243 (363)
Q Consensus 236 ~sa~~e~~ 243 (363)
+||...+.
T Consensus 158 cs~~tge~ 165 (185)
T KOG0073|consen 158 CSAVTGED 165 (185)
T ss_pred Eecccccc
Confidence 99885443
No 204
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.41 E-value=2.4e-12 Score=110.18 Aligned_cols=84 Identities=27% Similarity=0.272 Sum_probs=55.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHcC--CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKL--KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~--~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
+|+++|++|||||||+|.|++. ....++.+++|..... ...+ ..+.++||||+.....
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~------------------~~~~~~D~~g~~~~~~ 60 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVN------------------DKFRLVDLPGYGYAKV 60 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEcc------------------CeEEEecCCCcccccc
Confidence 4899999999999999999943 4446666666654322 2221 3688999999865322
Q ss_pred c------ccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 K------GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~------~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. ...+...++....+++++++|+|..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 92 (170)
T cd01876 61 SKEVKEKWGKLIEEYLENRENLKGVVLLIDSR 92 (170)
T ss_pred CHHHHHHHHHHHHHHHHhChhhhEEEEEEEcC
Confidence 1 1112234444445678899999874
No 205
>KOG1423|consensus
Probab=99.39 E-value=2.7e-12 Score=118.69 Aligned_cols=89 Identities=28% Similarity=0.312 Sum_probs=72.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
++||+||.||+|||||.|.+.|.+ ..++..+.||..-..|.+.-+. .++.|+||||++....
T Consensus 73 L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e-----------------TQlvf~DTPGlvs~~~ 135 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE-----------------TQLVFYDTPGLVSKKM 135 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc-----------------eEEEEecCCcccccch
Confidence 689999999999999999999995 5588999999999999998877 7899999999986433
Q ss_pred ccc-ch----hhHHHhhccccCEEEEEEeccc
Q psy2401 82 KGE-GL----GNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 82 ~~~-~l----~~~~l~~~~~aD~il~Vvda~~ 108 (363)
... .+ ......++..||+++.|+|++.
T Consensus 136 ~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~ 167 (379)
T KOG1423|consen 136 HRRHHLMMSVLQNPRDAAQNADCVVVVVDASA 167 (379)
T ss_pred hhhHHHHHHhhhCHHHHHhhCCEEEEEEeccC
Confidence 211 11 1234456788999999999964
No 206
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.39 E-value=2.2e-12 Score=115.92 Aligned_cols=78 Identities=12% Similarity=0.007 Sum_probs=50.9
Q ss_pred EeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcccchh
Q psy2401 8 IGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKGEGLG 87 (363)
Q Consensus 8 vG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~ 87 (363)
+|.+|||||||+++++.........|....+.....+.+++.. ..+.+|||||...+..
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~---------------~~l~iwDt~G~e~~~~------ 59 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP---------------IRFNVWDTAGQEKFGG------ 59 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEE---------------EEEEEEECCCchhhhh------
Confidence 5999999999999999654332222211122222334444433 6899999999755432
Q ss_pred hHHHhhccccCEEEEEEecc
Q psy2401 88 NKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 88 ~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++++|++++|+|++
T Consensus 60 -l~~~~~~~ad~~ilV~D~t 78 (200)
T smart00176 60 -LRDGYYIQGQCAIIMFDVT 78 (200)
T ss_pred -hhHHHhcCCCEEEEEEECC
Confidence 2224568999999999985
No 207
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.39 E-value=3.3e-12 Score=132.35 Aligned_cols=83 Identities=22% Similarity=0.340 Sum_probs=61.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC---ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK---ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSG 79 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~---~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
+-||++|++++|||||+++|+|.. .......+.|++.....+..++. ..+.+|||||..+
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g----------------~~i~~IDtPGhe~- 63 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG----------------RVLGFIDVPGHEK- 63 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC----------------cEEEEEECCCHHH-
Confidence 358999999999999999999853 22334457777665555544332 4589999999743
Q ss_pred CCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 80 ASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 80 ~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
+.+.+...+..+|++++|||+.+
T Consensus 64 ------fi~~m~~g~~~~D~~lLVVda~e 86 (614)
T PRK10512 64 ------FLSNMLAGVGGIDHALLVVACDD 86 (614)
T ss_pred ------HHHHHHHHhhcCCEEEEEEECCC
Confidence 33466777889999999999853
No 208
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.37 E-value=1e-11 Score=110.07 Aligned_cols=82 Identities=18% Similarity=0.161 Sum_probs=52.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.|++++|++|+|||||++.++.........| ++.......+.+.+.. ..+.+||+||.......
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~---------------~~l~i~Dt~g~~~~~~~ 65 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHP-TVFENYVTDCRVDGKP---------------VQLALWDTAGQEEYERL 65 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCC-cccceEEEEEEECCEE---------------EEEEEEECCCChhcccc
Confidence 5899999999999999999985433222122 2222222344444422 56889999997543321
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. . ..++.+|++++|++..
T Consensus 66 ~-----~--~~~~~a~~~llv~~i~ 83 (187)
T cd04129 66 R-----P--LSYSKAHVILIGFAVD 83 (187)
T ss_pred c-----h--hhcCCCCEEEEEEECC
Confidence 1 1 2458899999999984
No 209
>KOG1490|consensus
Probab=99.37 E-value=1.9e-12 Score=126.29 Aligned_cols=157 Identities=20% Similarity=0.226 Sum_probs=109.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.++.++|.||+||||++|.++.+.+.+.+|||||.....|++.+.- -.++++||||+.+-.-.
T Consensus 169 rTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY-----------------lrwQViDTPGILD~plE 231 (620)
T KOG1490|consen 169 RTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY-----------------LRWQVIDTPGILDRPEE 231 (620)
T ss_pred CeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe-----------------eeeeecCCccccCcchh
Confidence 5788999999999999999999999999999999999989887755 56899999999875544
Q ss_pred ccchh----hHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchh
Q psy2401 83 GEGLG----NKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHS 158 (363)
Q Consensus 83 ~~~l~----~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~ 158 (363)
..+.. -..++++|.| +|++.|.++.= +-..
T Consensus 232 drN~IEmqsITALAHLraa--VLYfmDLSe~C--------------------------------------------GySv 265 (620)
T KOG1490|consen 232 DRNIIEMQIITALAHLRSA--VLYFMDLSEMC--------------------------------------------GYSV 265 (620)
T ss_pred hhhHHHHHHHHHHHHhhhh--heeeeechhhh--------------------------------------------CCCH
Confidence 33221 1346777766 88999986410 0001
Q ss_pred HHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhh-cccccccEEEeccccccCC---CchHHHHHHHHHHhcCCCcEE
Q psy2401 159 IELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFL-NLLTIKPIIFVANVKENGF---KNNLLLDQLKIYAHNQNIPII 234 (363)
Q Consensus 159 ~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~-~~l~~kp~i~v~Nk~d~~~---~~~~~~~~i~~~~~~~~~~~i 234 (363)
..+.. .+.++ .+...||+|+|+||+|.-- -+++..+-++......+.+++
T Consensus 266 a~Qvk--------------------------LfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~ 319 (620)
T KOG1490|consen 266 AAQVK--------------------------LYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVV 319 (620)
T ss_pred HHHHH--------------------------HHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEE
Confidence 11122 22223 3447999999999999621 122333334444444458899
Q ss_pred EeeHHHHHHHhcCC
Q psy2401 235 IICAKLEEEISDLN 248 (363)
Q Consensus 235 ~~sa~~e~~i~el~ 248 (363)
.+|...|+.+.+..
T Consensus 320 ~tS~~~eegVm~Vr 333 (620)
T KOG1490|consen 320 QTSCVQEEGVMDVR 333 (620)
T ss_pred EecccchhceeeHH
Confidence 99999998887753
No 210
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.37 E-value=1.1e-11 Score=110.97 Aligned_cols=81 Identities=15% Similarity=0.091 Sum_probs=49.4
Q ss_pred cEEEEEeCCCCcHHHHHH-HHHcCCcc----ccCCCceee--cceeEE--------EEeCCcccccccccccccccccee
Q psy2401 3 LKCGLIGLPNVGKSTLFN-ALTKLKIS----AENYPFCTI--EPNIGI--------IEVPDKRLKHLNNIVKTKKIFPAI 67 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n-~Lt~~~~~----~~~~p~~t~--~~~~g~--------v~~~~~~~~~l~~~~~~~~~~~~~ 67 (363)
+||+++|.+|||||||+. .+.+.... ...|..|.- +..... +.+++.. ..
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~---------------v~ 67 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVS---------------VS 67 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEE---------------EE
Confidence 699999999999999995 55543221 112211110 100000 1233322 78
Q ss_pred EEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecc
Q psy2401 68 IKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 68 i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+++|||||.... +. ...++++|++++|+|..
T Consensus 68 l~iwDTaG~~~~------~~---~~~~~~ad~iilv~d~t 98 (195)
T cd01873 68 LRLWDTFGDHDK------DR---RFAYGRSDVVLLCFSIA 98 (195)
T ss_pred EEEEeCCCChhh------hh---cccCCCCCEEEEEEECC
Confidence 999999997531 11 12568999999999985
No 211
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.35 E-value=9e-12 Score=128.81 Aligned_cols=84 Identities=15% Similarity=0.149 Sum_probs=58.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcccc---------C------CCceeecceeEEEEeC---Ccccccccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAE---------N------YPFCTIEPNIGIIEVP---DKRLKHLNNIVKTKKIF 64 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~---------~------~p~~t~~~~~g~v~~~---~~~~~~l~~~~~~~~~~ 64 (363)
++++|+|++++|||||+++|+.....++ + ..+.|+......+.|. +..
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~-------------- 69 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGET-------------- 69 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCE--------------
Confidence 5899999999999999999976421111 1 1244555444444442 221
Q ss_pred ceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 65 PAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 65 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
..+++|||||..++.. .....++.||++++|+|+++
T Consensus 70 -~~l~liDTPG~~dF~~-------~v~~~l~~aD~aILVvDat~ 105 (595)
T TIGR01393 70 -YVLNLIDTPGHVDFSY-------EVSRSLAACEGALLLVDAAQ 105 (595)
T ss_pred -EEEEEEECCCcHHHHH-------HHHHHHHhCCEEEEEecCCC
Confidence 6799999999876533 44566789999999999964
No 212
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.35 E-value=9.1e-12 Score=113.60 Aligned_cols=82 Identities=16% Similarity=0.202 Sum_probs=56.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.+|||||||++.+++........| |........+.+++.. ..+.+|||+|...+..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~p-Ti~~~~~~~~~~~~~~---------------v~L~iwDt~G~e~~~~- 64 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVP-TVFENYTASFEIDKRR---------------IELNMWDTSGSSYYDN- 64 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCC-ccccceEEEEEECCEE---------------EEEEEEeCCCcHHHHH-
Confidence 6899999999999999999998644332223 2222222345565543 6799999999653322
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+ ....++.+|++++|+|.+
T Consensus 65 ---l---~~~~~~~~d~illvfdis 83 (222)
T cd04173 65 ---V---RPLAYPDSDAVLICFDIS 83 (222)
T ss_pred ---H---hHHhccCCCEEEEEEECC
Confidence 1 123468999999999985
No 213
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.34 E-value=1.9e-11 Score=101.52 Aligned_cols=80 Identities=26% Similarity=0.252 Sum_probs=53.1
Q ss_pred EEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcccch
Q psy2401 7 LIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKGEGL 86 (363)
Q Consensus 7 lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l 86 (363)
++|++|+|||||+|++++.......+..+..+............ ..+.+||+||+.....
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~D~~g~~~~~~----- 60 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKK---------------VKLQIWDTAGQERFRS----- 60 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEE---------------EEEEEEecCChHHHHh-----
Confidence 58999999999999999865422222222233333333332221 6799999999765433
Q ss_pred hhHHHhhccccCEEEEEEeccc
Q psy2401 87 GNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 87 ~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.....++.+|++++|+|++.
T Consensus 61 --~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 61 --LRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred --HHHHHhcCCCEEEEEEECcC
Confidence 22455688999999999853
No 214
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.33 E-value=1.5e-11 Score=126.87 Aligned_cols=82 Identities=20% Similarity=0.144 Sum_probs=61.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc------cc----------CCCceeecceeEEEEeCCccccccccccccccccce
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS------AE----------NYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPA 66 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~------~~----------~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~ 66 (363)
++|+|+|+.++|||||+++|+..... +. ...+.|+......+.+.+ .
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~-----------------~ 64 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG-----------------T 64 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC-----------------E
Confidence 58999999999999999999853110 11 123566666666777776 7
Q ss_pred eEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 67 IIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 67 ~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
++++|||||..++. ......++.+|++++|||+++
T Consensus 65 kinlIDTPGh~DF~-------~ev~~~l~~aD~alLVVDa~~ 99 (594)
T TIGR01394 65 KINIVDTPGHADFG-------GEVERVLGMVDGVLLLVDASE 99 (594)
T ss_pred EEEEEECCCHHHHH-------HHHHHHHHhCCEEEEEEeCCC
Confidence 89999999986543 255677789999999999964
No 215
>PRK09866 hypothetical protein; Provisional
Probab=99.33 E-value=2.8e-11 Score=122.76 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=29.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc-ccCCCceee
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS-AENYPFCTI 37 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~-~~~~p~~t~ 37 (363)
+.++++|++|+|||||+|+|+|..+. .++.|+++.
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~l 105 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTAL 105 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccc
Confidence 56899999999999999999998544 447777665
No 216
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.32 E-value=6.9e-12 Score=125.28 Aligned_cols=82 Identities=18% Similarity=0.146 Sum_probs=59.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccc-------------------------------cCCCceeecceeEEEEeCCccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISA-------------------------------ENYPFCTIEPNIGIIEVPDKRL 51 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~-------------------------------~~~p~~t~~~~~g~v~~~~~~~ 51 (363)
++|+++|+.++|||||+++|+.....+ ....+.|++.....+.+++
T Consensus 8 ~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~--- 84 (426)
T TIGR00483 8 INVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK--- 84 (426)
T ss_pred eEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC---
Confidence 689999999999999999998421100 0123666666665555554
Q ss_pred cccccccccccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 52 KHLNNIVKTKKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 52 ~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
..+.+|||||..+ +...+...++.+|++++|+|+.+
T Consensus 85 --------------~~i~iiDtpGh~~-------f~~~~~~~~~~aD~~ilVvDa~~ 120 (426)
T TIGR00483 85 --------------YEVTIVDCPGHRD-------FIKNMITGASQADAAVLVVAVGD 120 (426)
T ss_pred --------------eEEEEEECCCHHH-------HHHHHHhhhhhCCEEEEEEECCC
Confidence 6899999999643 23355666789999999999964
No 217
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.32 E-value=2.8e-11 Score=108.33 Aligned_cols=82 Identities=23% Similarity=0.286 Sum_probs=48.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccc-cCCC-c---eeecceeEEEEeCCccccccccccccccccceeEEEEeeecc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISA-ENYP-F---CTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGL 76 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~-~~~p-~---~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl 76 (363)
+++|+++|.+|||||||+|+|++..... ...+ + +|... ..+..++ ...+.+|||||+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~--~~~~~~~----------------~~~l~l~DtpG~ 62 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKR--TPYPHPK----------------FPNVTLWDLPGI 62 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCc--eeeecCC----------------CCCceEEeCCCC
Confidence 4789999999999999999999853211 1110 1 11110 1111111 146899999998
Q ss_pred cCCCCcccchhhHHHhh--ccccCEEEEEEe
Q psy2401 77 VSGASKGEGLGNKFLAH--IRETNIVIHVIR 105 (363)
Q Consensus 77 ~~~~~~~~~l~~~~l~~--~~~aD~il~Vvd 105 (363)
....... ..++.. +..+|++++|.+
T Consensus 63 ~~~~~~~----~~~l~~~~~~~~d~~l~v~~ 89 (197)
T cd04104 63 GSTAFPP----DDYLEEMKFSEYDFFIIISS 89 (197)
T ss_pred CcccCCH----HHHHHHhCccCcCEEEEEeC
Confidence 7543322 233332 467898888754
No 218
>PRK10218 GTP-binding protein; Provisional
Probab=99.32 E-value=3.6e-11 Score=124.15 Aligned_cols=82 Identities=22% Similarity=0.199 Sum_probs=61.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccc---------------cCCCceeecceeEEEEeCCccccccccccccccccce
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISA---------------ENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPA 66 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~---------------~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~ 66 (363)
.+|+++|+.++|||||+++|+... ... ....+.|+......+.+++ .
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~-----------------~ 68 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWND-----------------Y 68 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCC-----------------E
Confidence 589999999999999999998631 110 1124556665556666665 7
Q ss_pred eEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 67 IIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 67 ~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.+++|||||..++.. .....++.+|++++|+|+.+
T Consensus 69 ~inliDTPG~~df~~-------~v~~~l~~aDg~ILVVDa~~ 103 (607)
T PRK10218 69 RINIVDTPGHADFGG-------EVERVMSMVDSVLLVVDAFD 103 (607)
T ss_pred EEEEEECCCcchhHH-------HHHHHHHhCCEEEEEEeccc
Confidence 899999999876543 44567799999999999964
No 219
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.32 E-value=4.3e-11 Score=108.40 Aligned_cols=82 Identities=16% Similarity=0.092 Sum_probs=50.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEE--eCCccccccccccccccccceeEEEEeeecccCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIE--VPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSG 79 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~--~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
..|++++|++|||||||++.+..........| |......... .++.. ..+++|||+|....
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~---------------i~i~~~Dt~g~~~~ 71 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIP--TLGVEVHPLKFYTNCGP---------------ICFNVWDTAGQEKF 71 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCCCCCCCCC--ccceEEEEEEEEECCeE---------------EEEEEEECCCchhh
Confidence 37999999999999999975543222211112 3322222222 22222 67999999996433
Q ss_pred CCcccchhhHHHhhccccCEEEEEEecc
Q psy2401 80 ASKGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 80 ~~~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.. ......+.+|++++|+|.+
T Consensus 72 ~~-------~~~~~~~~~~~~i~v~d~~ 92 (215)
T PTZ00132 72 GG-------LRDGYYIKGQCAIIMFDVT 92 (215)
T ss_pred hh-------hhHHHhccCCEEEEEEECc
Confidence 21 1123457899999999985
No 220
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.31 E-value=1.7e-11 Score=103.24 Aligned_cols=133 Identities=20% Similarity=0.246 Sum_probs=88.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||.+||+.|||||||+++|.+...... .+. .+.+.+ .++||||-.-..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~--------KTq-~i~~~~--------------------~~IDTPGEyiE~-- 50 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYK--------KTQ-AIEYYD--------------------NTIDTPGEYIEN-- 50 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcC--------ccc-eeEecc--------------------cEEECChhheeC--
Confidence 7899999999999999999998533211 111 233333 359999954222
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
..+.+..+....+||++++|.|+.....+
T Consensus 51 -~~~y~aLi~ta~dad~V~ll~dat~~~~~-------------------------------------------------- 79 (143)
T PF10662_consen 51 -PRFYHALIVTAQDADVVLLLQDATEPRSV-------------------------------------------------- 79 (143)
T ss_pred -HHHHHHHHHHHhhCCEEEEEecCCCCCcc--------------------------------------------------
Confidence 23445666777899999999999642110
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCC-cEEEeeHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNI-PIIIICAKLE 241 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~-~~i~~sa~~e 241 (363)
+| + . |...-.+|+|=|++|.|.+ ..++..++.+++++.-|. .++.+|+...
T Consensus 80 ------------------~p--P----~---fa~~f~~pvIGVITK~Dl~-~~~~~i~~a~~~L~~aG~~~if~vS~~~~ 131 (143)
T PF10662_consen 80 ------------------FP--P----G---FASMFNKPVIGVITKIDLP-SDDANIERAKKWLKNAGVKEIFEVSAVTG 131 (143)
T ss_pred ------------------CC--c----h---hhcccCCCEEEEEECccCc-cchhhHHHHHHHHHHcCCCCeEEEECCCC
Confidence 01 0 1 1112368999999999975 246677888888887764 4789999854
Q ss_pred HHHh
Q psy2401 242 EEIS 245 (363)
Q Consensus 242 ~~i~ 245 (363)
+.|.
T Consensus 132 eGi~ 135 (143)
T PF10662_consen 132 EGIE 135 (143)
T ss_pred cCHH
Confidence 4443
No 221
>CHL00071 tufA elongation factor Tu
Probab=99.30 E-value=1.1e-11 Score=123.17 Aligned_cols=82 Identities=22% Similarity=0.180 Sum_probs=58.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccc----------------cCCCceeecceeEEEEeCCccccccccccccccccce
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISA----------------ENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPA 66 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~----------------~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~ 66 (363)
++|+++|++++|||||+++|++....+ .-.++.|++.....+..++ .
T Consensus 13 ~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~-----------------~ 75 (409)
T CHL00071 13 VNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETEN-----------------R 75 (409)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCC-----------------e
Confidence 689999999999999999999752211 1125666665443333333 5
Q ss_pred eEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 67 IIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 67 ~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
++.++||||+.+ +.......++.+|++++|+|+..
T Consensus 76 ~~~~iDtPGh~~-------~~~~~~~~~~~~D~~ilVvda~~ 110 (409)
T CHL00071 76 HYAHVDCPGHAD-------YVKNMITGAAQMDGAILVVSAAD 110 (409)
T ss_pred EEEEEECCChHH-------HHHHHHHHHHhCCEEEEEEECCC
Confidence 789999999642 33466777889999999999953
No 222
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.30 E-value=1.1e-11 Score=122.93 Aligned_cols=99 Identities=18% Similarity=0.141 Sum_probs=56.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc---ccCCCceeecceeEEEEeCCc-ccc---cc--cccccc---ccccceeEEE
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS---AENYPFCTIEPNIGIIEVPDK-RLK---HL--NNIVKT---KKIFPAIIKL 70 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~---~~~~p~~t~~~~~g~v~~~~~-~~~---~l--~~~~~~---~~~~~~~i~l 70 (363)
++|+++|++++|||||+++|++.... ..-..+.|+........+.-. ... .. ...+.- .......+++
T Consensus 5 ~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 84 (406)
T TIGR03680 5 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSF 84 (406)
T ss_pred EEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEE
Confidence 68999999999999999999874211 111123343332222211100 000 00 000000 0001257899
Q ss_pred EeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 71 VDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 71 vDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
+||||..++ ...+...+..+|++++|+|+.+
T Consensus 85 iDtPGh~~f-------~~~~~~g~~~aD~aIlVVDa~~ 115 (406)
T TIGR03680 85 VDAPGHETL-------MATMLSGAALMDGALLVIAANE 115 (406)
T ss_pred EECCCHHHH-------HHHHHHHHHHCCEEEEEEECCC
Confidence 999997433 3466777788999999999954
No 223
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.29 E-value=9.6e-12 Score=123.43 Aligned_cols=82 Identities=16% Similarity=0.113 Sum_probs=56.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcccc---------------------------------CCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAE---------------------------------NYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~---------------------------------~~p~~t~~~~~g~v~~~~~ 49 (363)
++|+++|+.++|||||+++|+...-.+. -..+.|++.....+.+++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~- 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK- 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence 5899999999999999999964311100 001334444444444443
Q ss_pred cccccccccccccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 50 RLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 50 ~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.++.++||||+.+ +.......+..+|++++|||+.+
T Consensus 80 ----------------~~~~liDtPGh~~-------f~~~~~~~~~~aD~allVVda~~ 115 (406)
T TIGR02034 80 ----------------RKFIVADTPGHEQ-------YTRNMATGASTADLAVLLVDARK 115 (406)
T ss_pred ----------------eEEEEEeCCCHHH-------HHHHHHHHHhhCCEEEEEEECCC
Confidence 6789999999653 33355567789999999999954
No 224
>KOG0079|consensus
Probab=99.28 E-value=1e-11 Score=103.14 Aligned_cols=153 Identities=18% Similarity=0.185 Sum_probs=105.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.+..|+|.||+|||+|+-.+....+.-+-...+..+....+++++|.+ ..+++|||+|...+..
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~---------------VkLqIwDtAGqErFrt- 72 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDR---------------VKLQIWDTAGQERFRT- 72 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcE---------------EEEEEeecccHHHHHH-
Confidence 356799999999999998888754443333334456667788888876 8899999999754332
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
-.-.+.|..+++++|.|...+
T Consensus 73 ------itstyyrgthgv~vVYDVTn~----------------------------------------------------- 93 (198)
T KOG0079|consen 73 ------ITSTYYRGTHGVIVVYDVTNG----------------------------------------------------- 93 (198)
T ss_pred ------HHHHHccCCceEEEEEECcch-----------------------------------------------------
Confidence 222345889999999998532
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
+.+..++.||++- +. .-...|-++|+||.|.+....-..+..+.|+...|+.++.+||+-.+
T Consensus 94 ESF~Nv~rWLeei----------------~~--ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~ 155 (198)
T KOG0079|consen 94 ESFNNVKRWLEEI----------------RN--NCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENE 155 (198)
T ss_pred hhhHhHHHHHHHH----------------Hh--cCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcc
Confidence 3344556666531 11 11345778899999976422234566778888889999999999666
Q ss_pred HHhcCC
Q psy2401 243 EISDLN 248 (363)
Q Consensus 243 ~i~el~ 248 (363)
++..+.
T Consensus 156 NvE~mF 161 (198)
T KOG0079|consen 156 NVEAMF 161 (198)
T ss_pred cchHHH
Confidence 655543
No 225
>KOG0075|consensus
Probab=99.28 E-value=4.1e-12 Score=105.34 Aligned_cols=80 Identities=26% Similarity=0.341 Sum_probs=59.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
|.+.++|..+||||||.|.+........-.| |...+...++-.+ .++.+||+||...+.+.
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~edmip--tvGfnmrk~tkgn-----------------vtiklwD~gGq~rfrsm 81 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYLEDMIP--TVGFNMRKVTKGN-----------------VTIKLWDLGGQPRFRSM 81 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccchhhhcc--cccceeEEeccCc-----------------eEEEEEecCCCccHHHH
Confidence 6889999999999999999876333222222 5555555555444 78999999998776654
Q ss_pred ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
++ .+.|.+++|++|||+++
T Consensus 82 We-------rycR~v~aivY~VDaad 100 (186)
T KOG0075|consen 82 WE-------RYCRGVSAIVYVVDAAD 100 (186)
T ss_pred HH-------HHhhcCcEEEEEeecCC
Confidence 43 56699999999999965
No 226
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.27 E-value=2.5e-11 Score=120.53 Aligned_cols=99 Identities=22% Similarity=0.150 Sum_probs=59.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCc---cccCCCceeecceeEEEEeCCccccccccccccc---------cccceeEEE
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKI---SAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTK---------KIFPAIIKL 70 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~---~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~---------~~~~~~i~l 70 (363)
++|+++|+.++|||||+.+|++... ...-..+.|++...+...+....--.....+... ......+++
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 89 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSF 89 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEEE
Confidence 6899999999999999999987411 1112345566554433333210000000001000 011257899
Q ss_pred EeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 71 VDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 71 vDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
|||||..+ +...++..+..+|++++|+|+.+
T Consensus 90 iDtPG~~~-------f~~~~~~~~~~~D~~llVVDa~~ 120 (411)
T PRK04000 90 VDAPGHET-------LMATMLSGAALMDGAILVIAANE 120 (411)
T ss_pred EECCCHHH-------HHHHHHHHHhhCCEEEEEEECCC
Confidence 99999643 34467777788999999999953
No 227
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.27 E-value=5.1e-11 Score=123.36 Aligned_cols=84 Identities=19% Similarity=0.156 Sum_probs=58.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccc---------c------CCCceeecceeEEEEeC---Ccccccccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISA---------E------NYPFCTIEPNIGIIEVP---DKRLKHLNNIVKTKKIF 64 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~---------~------~~p~~t~~~~~g~v~~~---~~~~~~l~~~~~~~~~~ 64 (363)
++++|+|+.++|||||+.+|+.....+ . ...+.|+......+.|. +..
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~-------------- 73 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGET-------------- 73 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCc--------------
Confidence 589999999999999999997531111 0 11355555554445443 111
Q ss_pred ceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 65 PAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 65 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
..+++|||||+.++.. .....++.+|++++|+|+++
T Consensus 74 -~~lnLiDTPGh~dF~~-------~v~~sl~~aD~aILVVDas~ 109 (600)
T PRK05433 74 -YILNLIDTPGHVDFSY-------EVSRSLAACEGALLVVDASQ 109 (600)
T ss_pred -EEEEEEECCCcHHHHH-------HHHHHHHHCCEEEEEEECCC
Confidence 6799999999876543 44466789999999999964
No 228
>KOG0465|consensus
Probab=99.26 E-value=1.7e-11 Score=122.06 Aligned_cols=226 Identities=17% Similarity=0.117 Sum_probs=168.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc---cc---------------CCCceeecceeEEEEeCCcccccccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS---AE---------------NYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIF 64 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~---~~---------------~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~ 64 (363)
.+|||+-+--+||||+-+.+.-.... .. ...+.|+........|.+
T Consensus 40 RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~---------------- 103 (721)
T KOG0465|consen 40 RNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRD---------------- 103 (721)
T ss_pred cccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeecc----------------
Confidence 47899999999999999988632111 11 113455555555555654
Q ss_pred ceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHh-h
Q psy2401 65 PAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEK-Y 143 (363)
Q Consensus 65 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~-~ 143 (363)
..+++|||||.+++.- +.-.++|..|.+++|+|+..+.. .+++-+|+.+..+.. +
T Consensus 104 -~~iNiIDTPGHvDFT~-------EVeRALrVlDGaVlvl~aV~GVq----------------sQt~tV~rQ~~ry~vP~ 159 (721)
T KOG0465|consen 104 -YRINIIDTPGHVDFTF-------EVERALRVLDGAVLVLDAVAGVE----------------SQTETVWRQMKRYNVPR 159 (721)
T ss_pred -ceeEEecCCCceeEEE-------EehhhhhhccCeEEEEEccccee----------------hhhHHHHHHHHhcCCCe
Confidence 7899999999998766 34467788999999999966542 345778888877777 6
Q ss_pred hhhhhcccccCCchhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhh-cccccccEEEecccccc---CCCchHHH
Q psy2401 144 IDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFL-NLLTIKPIIFVANVKEN---GFKNNLLL 219 (363)
Q Consensus 144 ~~~i~k~~~~g~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~-~~l~~kp~i~v~Nk~d~---~~~~~~~~ 219 (363)
+.++|||++-|. +...+++.+...|.......++|+..++ .+.++ +++..|.+.+-....+. +..|.++.
T Consensus 160 i~FiNKmDRmGa----~~~~~l~~i~~kl~~~~a~vqiPig~e~--~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~ 233 (721)
T KOG0465|consen 160 ICFINKMDRMGA----SPFRTLNQIRTKLNHKPAVVQIPIGSES--NFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLE 233 (721)
T ss_pred EEEEehhhhcCC----ChHHHHHHHHhhcCCchheeEccccccc--cchhHHhhhhceEEEEcCCCCceeEeccCCHHHH
Confidence 889999976553 4667888888888866667778988877 67777 77788777664322221 11355555
Q ss_pred HHHHHHHhcCCCcEEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeC
Q psy2401 220 DQLKIYAHNQNIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTV 285 (363)
Q Consensus 220 ~~i~~~~~~~~~~~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~ 285 (363)
+...+. +..+.+-++++|+++.+.||++...+.+.|..+|++.--.-.+.|||-.
T Consensus 234 ~~~~e~-----------R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~G 288 (721)
T KOG0465|consen 234 ELAEEK-----------RQALIETLADVDETLAEMFLEEEEPSAQQLKAAIRRATIKRSFVPVLCG 288 (721)
T ss_pred HHHHHH-----------HHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHHHHHhhcceeeEEec
Confidence 555555 6778889999999999999999998999999999999989999999986
No 229
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.26 E-value=1.8e-11 Score=123.61 Aligned_cols=82 Identities=18% Similarity=0.123 Sum_probs=55.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccC-----------CC----------------------ceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAEN-----------YP----------------------FCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~-----------~p----------------------~~t~~~~~g~v~~~~~ 49 (363)
++|+++|++++|||||+++|+...-.+.. .+ +.|++.....+.+++
T Consensus 28 ~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~- 106 (474)
T PRK05124 28 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEK- 106 (474)
T ss_pred eEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCC-
Confidence 68999999999999999999754111100 01 233343333333333
Q ss_pred cccccccccccccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 50 RLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 50 ~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.++.++||||+.+ +.......++.+|++++|||+..
T Consensus 107 ----------------~~i~~iDTPGh~~-------f~~~~~~~l~~aD~allVVDa~~ 142 (474)
T PRK05124 107 ----------------RKFIIADTPGHEQ-------YTRNMATGASTCDLAILLIDARK 142 (474)
T ss_pred ----------------cEEEEEECCCcHH-------HHHHHHHHHhhCCEEEEEEECCC
Confidence 6789999999532 33355566799999999999953
No 230
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.26 E-value=1.2e-11 Score=129.39 Aligned_cols=82 Identities=18% Similarity=0.163 Sum_probs=55.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccc----------cCCCc----------------------eeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISA----------ENYPF----------------------CTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~----------~~~p~----------------------~t~~~~~g~v~~~~~ 49 (363)
++|+++|++|+|||||+++|+... ... +..++ .|++...+.+.+++
T Consensus 25 ~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~- 103 (632)
T PRK05506 25 LRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPK- 103 (632)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCC-
Confidence 689999999999999999998642 111 11223 33333333344333
Q ss_pred cccccccccccccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 50 RLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 50 ~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.++.++||||+.+ +.......+..+|++++|||+..
T Consensus 104 ----------------~~~~liDtPG~~~-------f~~~~~~~~~~aD~~llVvda~~ 139 (632)
T PRK05506 104 ----------------RKFIVADTPGHEQ-------YTRNMVTGASTADLAIILVDARK 139 (632)
T ss_pred ----------------ceEEEEECCChHH-------HHHHHHHHHHhCCEEEEEEECCC
Confidence 5788999999643 22345566789999999999953
No 231
>PRK12740 elongation factor G; Reviewed
Probab=99.26 E-value=6.6e-11 Score=124.71 Aligned_cols=220 Identities=17% Similarity=0.133 Sum_probs=133.2
Q ss_pred EeCCCCcHHHHHHHHHcCC---cccc---------C------CCceeecceeEEEEeCCccccccccccccccccceeEE
Q psy2401 8 IGLPNVGKSTLFNALTKLK---ISAE---------N------YPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIK 69 (363)
Q Consensus 8 vG~~g~GKSTL~n~Lt~~~---~~~~---------~------~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~ 69 (363)
+|++|+|||||+++|.... ...+ + .++.|+......+.+.+ ..++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-----------------~~i~ 63 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG-----------------HKIN 63 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC-----------------EEEE
Confidence 6999999999999995331 1111 1 13455555556666666 7899
Q ss_pred EEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHh-hhhhhh
Q psy2401 70 LVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEK-YIDKEN 148 (363)
Q Consensus 70 lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~-~~~~i~ 148 (363)
+|||||..++ .......++.+|++++|+|++.+.. ...+..+..+..... .+..+|
T Consensus 64 liDtPG~~~~-------~~~~~~~l~~aD~vllvvd~~~~~~----------------~~~~~~~~~~~~~~~p~iiv~N 120 (668)
T PRK12740 64 LIDTPGHVDF-------TGEVERALRVLDGAVVVVCAVGGVE----------------PQTETVWRQAEKYGVPRIIFVN 120 (668)
T ss_pred EEECCCcHHH-------HHHHHHHHHHhCeEEEEEeCCCCcC----------------HHHHHHHHHHHHcCCCEEEEEE
Confidence 9999997542 2355667789999999999964311 111222333333333 356788
Q ss_pred cccccCCchhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhh-cccccccEEEecccc--ccCCCchHHHHHHHHH
Q psy2401 149 KKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFL-NLLTIKPIIFVANVK--ENGFKNNLLLDQLKIY 225 (363)
Q Consensus 149 k~~~~g~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~-~~l~~kp~i~v~Nk~--d~~~~~~~~~~~i~~~ 225 (363)
|++..+. .....++++++.|.....+..+|+...+ .+.++ +++..+.+.|- +.. .....+....+.+.+.
T Consensus 121 K~D~~~~----~~~~~~~~l~~~l~~~~~~~~~p~~~~~--~~~~~id~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 193 (668)
T PRK12740 121 KMDRAGA----DFFRVLAQLQEKLGAPVVPLQLPIGEGD--DFTGVVDLLSMKAYRYD-EGGPSEEIEIPAELLDRAEEA 193 (668)
T ss_pred CCCCCCC----CHHHHHHHHHHHHCCCceeEEecccCCC--CceEEEECccceEEEec-CCCeeEEecCCHHHHHHHHHH
Confidence 8865432 2445667777777654434444543332 23333 33343333322 100 0000123333333333
Q ss_pred HhcCCCcEEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeC
Q psy2401 226 AHNQNIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTV 285 (363)
Q Consensus 226 ~~~~~~~~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~ 285 (363)
..++-+.+++.+++..++||+...++.+.+...++.....-.++|+|..
T Consensus 194 -----------~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~Pv~~g 242 (668)
T PRK12740 194 -----------REELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIVPVFCG 242 (668)
T ss_pred -----------HHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 3456677888899999999999888888888888888888889999886
No 232
>KOG0086|consensus
Probab=99.25 E-value=2.2e-11 Score=101.58 Aligned_cols=152 Identities=17% Similarity=0.158 Sum_probs=100.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+|+.++|+.|+|||.|+..+...+..-..-....++..+..+.+.+++ .++++|||+|..++.+
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~---------------vKLQIWDTAGQErFRS- 73 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKT---------------VKLQIWDTAGQERFRS- 73 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcE---------------EEEEEeecccHHHHHH-
Confidence 689999999999999999998765442222222344455567777765 7899999999876554
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
...++.|.|-.+++|.|+...
T Consensus 74 ------VtRsYYRGAAGAlLVYD~Tsr----------------------------------------------------- 94 (214)
T KOG0086|consen 74 ------VTRSYYRGAAGALLVYDITSR----------------------------------------------------- 94 (214)
T ss_pred ------HHHHHhccccceEEEEeccch-----------------------------------------------------
Confidence 555777999999999998431
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
+.++.+..||... +.+. -...-+++++||.|++...+.-..+..+++.++.+.+..+||.+.+
T Consensus 95 dsfnaLtnWL~Da----------------R~lA-s~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGe 157 (214)
T KOG0086|consen 95 DSFNALTNWLTDA----------------RTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGE 157 (214)
T ss_pred hhHHHHHHHHHHH----------------HhhC-CCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccc
Confidence 2334444454421 1110 0233455578999975322233444556677777788899999877
Q ss_pred HHhc
Q psy2401 243 EISD 246 (363)
Q Consensus 243 ~i~e 246 (363)
++.|
T Consensus 158 NVEE 161 (214)
T KOG0086|consen 158 NVEE 161 (214)
T ss_pred cHHH
Confidence 7654
No 233
>PRK12736 elongation factor Tu; Reviewed
Probab=99.25 E-value=5.8e-11 Score=117.43 Aligned_cols=82 Identities=23% Similarity=0.248 Sum_probs=56.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc----------------ccCCCceeecceeEEEEeCCccccccccccccccccce
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS----------------AENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPA 66 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~----------------~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~ 66 (363)
++|+++|++++|||||+++|++.... ..-..+.|++.. .+.+.... .
T Consensus 13 ~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~--~~~~~~~~---------------~ 75 (394)
T PRK12736 13 VNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTA--HVEYETEK---------------R 75 (394)
T ss_pred eEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEE--eeEecCCC---------------c
Confidence 68999999999999999999873111 011345666543 33332211 5
Q ss_pred eEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 67 IIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 67 ~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
++.++||||..+ +...+...+..+|++++|+|+.+
T Consensus 76 ~i~~iDtPGh~~-------f~~~~~~~~~~~d~~llVvd~~~ 110 (394)
T PRK12736 76 HYAHVDCPGHAD-------YVKNMITGAAQMDGAILVVAATD 110 (394)
T ss_pred EEEEEECCCHHH-------HHHHHHHHHhhCCEEEEEEECCC
Confidence 789999999643 33466677788999999999853
No 234
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.25 E-value=4.1e-11 Score=111.08 Aligned_cols=88 Identities=17% Similarity=0.220 Sum_probs=63.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
+++|+++|.+|||||||+|+|++.. +.++.++.+|.........+.+ ..+.+|||||+.+..
T Consensus 31 ~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g-----------------~~i~vIDTPGl~~~~ 93 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG-----------------FKLNIIDTPGLLESV 93 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC-----------------eEEEEEECCCcCcch
Confidence 3789999999999999999999984 5677888788887777777766 679999999998653
Q ss_pred Ccc---cchhhHHHhhc--cccCEEEEEEec
Q psy2401 81 SKG---EGLGNKFLAHI--RETNIVIHVIRC 106 (363)
Q Consensus 81 ~~~---~~l~~~~l~~~--~~aD~il~Vvda 106 (363)
... ..........+ ...|++++|.+.
T Consensus 94 ~~~~~~~~~~~~I~~~l~~~~idvIL~V~rl 124 (249)
T cd01853 94 MDQRVNRKILSSIKRYLKKKTPDVVLYVDRL 124 (249)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCEEEEEEcC
Confidence 211 11111122222 257888888765
No 235
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.24 E-value=4.5e-11 Score=118.27 Aligned_cols=82 Identities=22% Similarity=0.212 Sum_probs=57.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-------cc---------ccCCCceeecceeEEEEeCCccccccccccccccccce
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-------IS---------AENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPA 66 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-------~~---------~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~ 66 (363)
++|+++|+.++|||||+++|++.. .. ..-.+++|++... +.+.... .
T Consensus 13 ~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~--~~~~~~~---------------~ 75 (394)
T TIGR00485 13 VNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAH--VEYETEN---------------R 75 (394)
T ss_pred EEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEE--EEEcCCC---------------E
Confidence 679999999999999999998430 10 1112566766543 3332211 5
Q ss_pred eEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 67 IIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 67 ~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
++.+|||||..++ ...++..+..+|++++|+|+.+
T Consensus 76 ~~~liDtpGh~~f-------~~~~~~~~~~~D~~ilVvda~~ 110 (394)
T TIGR00485 76 HYAHVDCPGHADY-------VKNMITGAAQMDGAILVVSATD 110 (394)
T ss_pred EEEEEECCchHHH-------HHHHHHHHhhCCEEEEEEECCC
Confidence 7899999997543 3466677788999999999953
No 236
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.24 E-value=1.1e-10 Score=120.08 Aligned_cols=98 Identities=11% Similarity=0.044 Sum_probs=57.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcccccccccc-ccc--cccceeEEEEeeecccC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIV-KTK--KIFPAIIKLVDIAGLVS 78 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~-~~~--~~~~~~i~lvDtpGl~~ 78 (363)
+.-|+++|++|+|||||+|+|++.........++|.+.....+..+.. ....... ... ..-...+.+|||||+..
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~--~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVI--EGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccc--cccccccccccccccccCcEEEEECCCcHh
Confidence 346899999999999999999987543333334554433333332210 0000000 000 00012489999999754
Q ss_pred CCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 79 GASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 79 ~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
+.. .....++.+|++++|+|+.+
T Consensus 82 f~~-------l~~~~~~~aD~~IlVvD~~~ 104 (590)
T TIGR00491 82 FTN-------LRKRGGALADLAILIVDINE 104 (590)
T ss_pred HHH-------HHHHHHhhCCEEEEEEECCc
Confidence 332 22345588999999999854
No 237
>PRK12735 elongation factor Tu; Reviewed
Probab=99.23 E-value=6.8e-11 Score=117.01 Aligned_cols=82 Identities=23% Similarity=0.235 Sum_probs=57.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC-------Ccc---------ccCCCceeecceeEEEEeCCccccccccccccccccce
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL-------KIS---------AENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPA 66 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~-------~~~---------~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~ 66 (363)
++|+++|++++|||||+++|++. ... ..-..++|++.....+..++ .
T Consensus 13 ~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~-----------------~ 75 (396)
T PRK12735 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETAN-----------------R 75 (396)
T ss_pred EEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCC-----------------c
Confidence 67999999999999999999862 110 01134566654333333332 5
Q ss_pred eEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 67 IIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 67 ~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
++.++||||+.+ +...+...+..+|++++|+|+..
T Consensus 76 ~i~~iDtPGh~~-------f~~~~~~~~~~aD~~llVvda~~ 110 (396)
T PRK12735 76 HYAHVDCPGHAD-------YVKNMITGAAQMDGAILVVSAAD 110 (396)
T ss_pred EEEEEECCCHHH-------HHHHHHhhhccCCEEEEEEECCC
Confidence 789999999742 33466677789999999999853
No 238
>KOG0093|consensus
Probab=99.23 E-value=3.9e-11 Score=99.59 Aligned_cols=154 Identities=15% Similarity=0.105 Sum_probs=105.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.|+.++|...+||||++...++.....+-+....++....++.-.++| ..+++|||+|.....
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kR---------------iklQiwDTagqEryr-- 84 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKR---------------IKLQIWDTAGQERYR-- 84 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccE---------------EEEEEEecccchhhh--
Confidence 589999999999999999999875554443333444444455555555 789999999976522
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
.-.-.++|.+++++++.|...+
T Consensus 85 -----tiTTayyRgamgfiLmyDitNe----------------------------------------------------- 106 (193)
T KOG0093|consen 85 -----TITTAYYRGAMGFILMYDITNE----------------------------------------------------- 106 (193)
T ss_pred -----HHHHHHhhccceEEEEEecCCH-----------------------------------------------------
Confidence 2445778999999999998421
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
+.++.+++|..+-+.+ .| ...|+|+|+||.|.+...--..++.+.++.+.|..++.+||+..-
T Consensus 107 eSf~svqdw~tqIkty---sw--------------~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~Ni 169 (193)
T KOG0093|consen 107 ESFNSVQDWITQIKTY---SW--------------DNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENI 169 (193)
T ss_pred HHHHHHHHHHHHheee---ec--------------cCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccc
Confidence 2344444444422111 11 356999999999975322224567777777889899999999766
Q ss_pred HHhcCC
Q psy2401 243 EISDLN 248 (363)
Q Consensus 243 ~i~el~ 248 (363)
++.++.
T Consensus 170 nVk~~F 175 (193)
T KOG0093|consen 170 NVKQVF 175 (193)
T ss_pred cHHHHH
Confidence 665553
No 239
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.22 E-value=2.2e-10 Score=102.97 Aligned_cols=89 Identities=17% Similarity=0.116 Sum_probs=55.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.||+++|.+|||||||++.+++........|....+.....+.+++.. +. .....+++|||+|......
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~---------~~-~~~~~l~IwDtaG~e~~~~- 69 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGT---------PE-EKTFFVELWDVGGSESVKS- 69 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCC---------CC-CcEEEEEEEecCCchhHHH-
Confidence 489999999999999999999865443332322212222334443210 00 0015799999999754322
Q ss_pred ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
+ ....++.+|++++|+|.++
T Consensus 70 ---l---~~~~yr~ad~iIlVyDvtn 89 (202)
T cd04102 70 ---T---RAVFYNQVNGIILVHDLTN 89 (202)
T ss_pred ---H---HHHHhCcCCEEEEEEECcC
Confidence 2 2234589999999999854
No 240
>KOG0095|consensus
Probab=99.22 E-value=4.9e-11 Score=99.18 Aligned_cols=84 Identities=21% Similarity=0.175 Sum_probs=65.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||++||..|+|||.|.+.+|..-.+.+.-.....+.-..++++++.. .++++|||+|..++.+
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gek---------------iklqiwdtagqerfrs- 71 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEK---------------IKLQIWDTAGQERFRS- 71 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeE---------------EEEEEeeccchHHHHH-
Confidence 689999999999999999999754443333333344556678888865 7899999999876554
Q ss_pred ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
-..++.|.|+++++|.|.+-
T Consensus 72 ------itqsyyrsahalilvydisc 91 (213)
T KOG0095|consen 72 ------ITQSYYRSAHALILVYDISC 91 (213)
T ss_pred ------HHHHHhhhcceEEEEEeccc
Confidence 55677799999999999863
No 241
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.22 E-value=2.4e-10 Score=98.71 Aligned_cols=84 Identities=20% Similarity=0.163 Sum_probs=62.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCc--------cccCC--CceeecceeEEEEeCCccccccccccccccccceeEEEE
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKI--------SAENY--PFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLV 71 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~--------~~~~~--p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lv 71 (363)
+.||+++|+-++||||++++++.... ..+.. ..||..+..|.+.+.+. ..+.++
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~----------------~~v~Lf 73 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED----------------TGVHLF 73 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc----------------ceEEEe
Confidence 36899999999999999999986532 11111 23788888888888774 578999
Q ss_pred eeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 72 DIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 72 DtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
+|||..++.-.+ --..+.++.++++||++.
T Consensus 74 gtPGq~RF~fm~-------~~l~~ga~gaivlVDss~ 103 (187)
T COG2229 74 GTPGQERFKFMW-------EILSRGAVGAIVLVDSSR 103 (187)
T ss_pred cCCCcHHHHHHH-------HHHhCCcceEEEEEecCC
Confidence 999987653321 133478999999999864
No 242
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.21 E-value=2.3e-11 Score=124.04 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=101.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC-Cc--c---c----------cCC------CceeecceeEEEEeCCcccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL-KI--S---A----------ENY------PFCTIEPNIGIIEVPDKRLKHLNNIVKT 60 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~-~~--~---~----------~~~------p~~t~~~~~g~v~~~~~~~~~l~~~~~~ 60 (363)
++++|+|++|+|||||.++|+.. .+ . + +++ .+.|+......+.+++
T Consensus 12 RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~------------ 79 (527)
T TIGR00503 12 RTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRD------------ 79 (527)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCC------------
Confidence 58999999999999999998532 11 1 1 000 1223333333344444
Q ss_pred ccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHH
Q psy2401 61 KKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAIL 140 (363)
Q Consensus 61 ~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~ 140 (363)
.++++|||||..++. ......++.+|++++|+|+..+. ....+..+..+...
T Consensus 80 -----~~inliDTPG~~df~-------~~~~~~l~~aD~aIlVvDa~~gv----------------~~~t~~l~~~~~~~ 131 (527)
T TIGR00503 80 -----CLVNLLDTPGHEDFS-------EDTYRTLTAVDNCLMVIDAAKGV----------------ETRTRKLMEVTRLR 131 (527)
T ss_pred -----eEEEEEECCChhhHH-------HHHHHHHHhCCEEEEEEECCCCC----------------CHHHHHHHHHHHhc
Confidence 789999999985433 35667789999999999986431 11123333333333
Q ss_pred Hh-hhhhhhcccccCCchhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhh-cccccccEEEe
Q psy2401 141 EK-YIDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFL-NLLTIKPIIFV 205 (363)
Q Consensus 141 ~~-~~~~i~k~~~~g~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~-~~l~~kp~i~v 205 (363)
.. .+..+||+++.+ .+...+++.+++.+.....+..+|++.++ .++++ +++..+|.+|-
T Consensus 132 ~~PiivviNKiD~~~----~~~~~ll~~i~~~l~~~~~~~~~PIg~~~--~f~gv~d~l~~~~~~y~ 192 (527)
T TIGR00503 132 DTPIFTFMNKLDRDI----RDPLELLDEVENELKINCAPITWPIGCGK--LFKGVYHLLKDETYLYQ 192 (527)
T ss_pred CCCEEEEEECccccC----CCHHHHHHHHHHHhCCCCccEEEEecCCC--ceeEEEEcccCcceecC
Confidence 33 357888886432 23556788888888876666677877665 56666 78888899884
No 243
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.20 E-value=4.8e-11 Score=97.30 Aligned_cols=80 Identities=24% Similarity=0.277 Sum_probs=50.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCcc----ccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCC
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKIS----AENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSG 79 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~----~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
||.++|.+|||||||+++|.+.... .......+.. .....+...+ ..+.+||++|....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------------~~~~~~d~~g~~~~ 63 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIG--VDVIVVDGDR---------------QSLQFWDFGGQEEF 63 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEE--EEEEEETTEE---------------EEEEEEEESSSHCH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEE--EEEEEecCCc---------------eEEEEEecCcccee
Confidence 7999999999999999999986443 1111111111 1123333322 45889999997432
Q ss_pred CCcccchhhHHHhhccccCEEEEEEecc
Q psy2401 80 ASKGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 80 ~~~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.... . ..+..+|++++|+|++
T Consensus 64 ~~~~-----~--~~~~~~d~~ilv~D~s 84 (119)
T PF08477_consen 64 YSQH-----Q--FFLKKADAVILVYDLS 84 (119)
T ss_dssp HCTS-----H--HHHHHSCEEEEEEECC
T ss_pred cccc-----c--chhhcCcEEEEEEcCC
Confidence 2211 1 1268899999999985
No 244
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.20 E-value=5e-10 Score=108.58 Aligned_cols=93 Identities=23% Similarity=0.249 Sum_probs=63.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC----Cc------------cccCCCc---eeeccee---EEEEeCCcccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL----KI------------SAENYPF---CTIEPNI---GIIEVPDKRLKHLNNIVKT 60 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~----~~------------~~~~~p~---~t~~~~~---g~v~~~~~~~~~l~~~~~~ 60 (363)
..||++|+.|+|||||+|++++. .. -+++.+| +|.+|.. -.+.+.-
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~------------ 85 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEINI------------ 85 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEec------------
Confidence 46999999999999999999987 22 2556778 7778765 3333321
Q ss_pred ccccceeEEEEeeecccCCCCcccchhhH----------------------HHhhcc-ccCEEEEEE-ecc
Q psy2401 61 KKIFPAIIKLVDIAGLVSGASKGEGLGNK----------------------FLAHIR-ETNIVIHVI-RCF 107 (363)
Q Consensus 61 ~~~~~~~i~lvDtpGl~~~~~~~~~l~~~----------------------~l~~~~-~aD~il~Vv-da~ 107 (363)
...+..++.++||+|+......|..-..+ ....++ .+|..++|. |++
T Consensus 86 ~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgs 156 (492)
T TIGR02836 86 NEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGT 156 (492)
T ss_pred cCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCC
Confidence 11112679999999997654444322233 455666 788888888 764
No 245
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.20 E-value=9.5e-11 Score=105.49 Aligned_cols=82 Identities=24% Similarity=0.369 Sum_probs=55.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKG 83 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 83 (363)
+|.++|++|||||||++.|+..... ..++ +..++.+....... .....+.+||+||..+.
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~-~t~~--s~~~~~~~~~~~~~-------------~~~~~~~l~D~pG~~~~---- 61 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYR-STVT--SIEPNVATFILNSE-------------GKGKKFRLVDVPGHPKL---- 61 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CccC--cEeecceEEEeecC-------------CCCceEEEEECCCCHHH----
Confidence 6899999999999999999985332 1222 22344444443210 00156899999997543
Q ss_pred cchhhHHHhhcccc-CEEEEEEeccc
Q psy2401 84 EGLGNKFLAHIRET-NIVIHVIRCFK 108 (363)
Q Consensus 84 ~~l~~~~l~~~~~a-D~il~Vvda~~ 108 (363)
.......++.+ +++|+|+|+..
T Consensus 62 ---~~~~~~~~~~~~~~vV~VvD~~~ 84 (203)
T cd04105 62 ---RDKLLETLKNSAKGIVFVVDSAT 84 (203)
T ss_pred ---HHHHHHHHhccCCEEEEEEECcc
Confidence 23556667787 99999999953
No 246
>PLN03127 Elongation factor Tu; Provisional
Probab=99.19 E-value=1.2e-10 Score=116.56 Aligned_cols=82 Identities=23% Similarity=0.188 Sum_probs=58.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCc----------------cccCCCceeecceeEEEEeCCccccccccccccccccce
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKI----------------SAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPA 66 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~----------------~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~ 66 (363)
++|+++|+.++|||||+++|++... ...-.++.|++.....++.++ .
T Consensus 62 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~-----------------~ 124 (447)
T PLN03127 62 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAK-----------------R 124 (447)
T ss_pred EEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCC-----------------e
Confidence 6799999999999999999984210 011226777776544444433 6
Q ss_pred eEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 67 IIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 67 ~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
++.++||||+.+ +.+.....+..+|++++|||+.+
T Consensus 125 ~i~~iDtPGh~~-------f~~~~~~g~~~aD~allVVda~~ 159 (447)
T PLN03127 125 HYAHVDCPGHAD-------YVKNMITGAAQMDGGILVVSAPD 159 (447)
T ss_pred EEEEEECCCccc-------hHHHHHHHHhhCCEEEEEEECCC
Confidence 789999999743 33455566678999999999853
No 247
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.19 E-value=1.6e-10 Score=105.34 Aligned_cols=92 Identities=18% Similarity=0.108 Sum_probs=57.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccC----------------CCceeecceeEEEEeCCccccccccccccccccce
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAEN----------------YPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPA 66 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~----------------~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~ 66 (363)
++|+++|+.++|||||+.+|+.....++. ..+.|+......+.+...... .. .....
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~------~~-~~~~~ 73 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEED------KA-DGNEY 73 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCccc------cc-CCCce
Confidence 47999999999999999999754211110 012333333223333210000 00 00126
Q ss_pred eEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 67 IIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 67 ~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.+++|||||..++.. .....++.+|++++|+|+..
T Consensus 74 ~i~iiDTPG~~~f~~-------~~~~~l~~aD~~ilVvD~~~ 108 (222)
T cd01885 74 LINLIDSPGHVDFSS-------EVTAALRLCDGALVVVDAVE 108 (222)
T ss_pred EEEEECCCCccccHH-------HHHHHHHhcCeeEEEEECCC
Confidence 799999999876443 66778899999999999954
No 248
>KOG0410|consensus
Probab=99.19 E-value=2.3e-11 Score=113.34 Aligned_cols=89 Identities=27% Similarity=0.451 Sum_probs=74.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.-|++||.+|||||||+++||++.....+.-|.|.+|+......+.. ..+-+.||.|+......
T Consensus 179 pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg----------------~~vlltDTvGFisdLP~ 242 (410)
T KOG0410|consen 179 PVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG----------------NFVLLTDTVGFISDLPI 242 (410)
T ss_pred ceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC----------------cEEEEeechhhhhhCcH
Confidence 45899999999999999999987788888899999999988888775 46789999999865442
Q ss_pred ccchhh---HHHhhccccCEEEEEEecccC
Q psy2401 83 GEGLGN---KFLAHIRETNIVIHVIRCFKD 109 (363)
Q Consensus 83 ~~~l~~---~~l~~~~~aD~il~Vvda~~~ 109 (363)
.+.. ..+.++..+|+++||+|.+++
T Consensus 243 --~LvaAF~ATLeeVaeadlllHvvDiShP 270 (410)
T KOG0410|consen 243 --QLVAAFQATLEEVAEADLLLHVVDISHP 270 (410)
T ss_pred --HHHHHHHHHHHHHhhcceEEEEeecCCc
Confidence 3333 446777889999999999874
No 249
>PLN00023 GTP-binding protein; Provisional
Probab=99.18 E-value=3.3e-10 Score=107.80 Aligned_cols=96 Identities=20% Similarity=0.090 Sum_probs=56.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|..|||||||++.+.+........|....+.....+.+++... .+..+ .........++||||+|...+..
T Consensus 22 iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~-~~~~i-k~d~~k~v~LqIWDTAGqErfrs- 98 (334)
T PLN00023 22 VRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGS-SSNSI-KGDSERDFFVELWDVSGHERYKD- 98 (334)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCccc-ccccc-cccCCceEEEEEEECCCChhhhh-
Confidence 6999999999999999999998644332223222222233445432100 00000 00000116799999999765433
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
..-..++++|++|+|+|++
T Consensus 99 ------L~~~yyr~AdgiILVyDIT 117 (334)
T PLN00023 99 ------CRSLFYSQINGVIFVHDLS 117 (334)
T ss_pred ------hhHHhccCCCEEEEEEeCC
Confidence 2224468999999999985
No 250
>PRK00049 elongation factor Tu; Reviewed
Probab=99.18 E-value=1.3e-10 Score=115.11 Aligned_cols=82 Identities=23% Similarity=0.207 Sum_probs=58.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc----------------ccCCCceeecceeEEEEeCCccccccccccccccccce
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS----------------AENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPA 66 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~----------------~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~ 66 (363)
++|+++|++++|||||+++|++.... ..-.++.|++.....+..++ .
T Consensus 13 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~-----------------~ 75 (396)
T PRK00049 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEK-----------------R 75 (396)
T ss_pred EEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCC-----------------e
Confidence 67999999999999999999873110 01135667665543333333 6
Q ss_pred eEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 67 IIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 67 ~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
++.++||||+.+ +.......+..+|++++|+|+..
T Consensus 76 ~i~~iDtPG~~~-------f~~~~~~~~~~aD~~llVVDa~~ 110 (396)
T PRK00049 76 HYAHVDCPGHAD-------YVKNMITGAAQMDGAILVVSAAD 110 (396)
T ss_pred EEEEEECCCHHH-------HHHHHHhhhccCCEEEEEEECCC
Confidence 789999999742 33455677789999999999853
No 251
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.17 E-value=2.9e-10 Score=104.31 Aligned_cols=89 Identities=20% Similarity=0.185 Sum_probs=69.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcC-CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKL-KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~-~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
++++-|+|.+|+|||||+|+|... ..+++..+-+|..++.-...+++ ..+.+||+||+.++.
T Consensus 39 pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~-----------------~~l~lwDtPG~gdg~ 101 (296)
T COG3596 39 PVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG-----------------ENLVLWDTPGLGDGK 101 (296)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc-----------------cceEEecCCCcccch
Confidence 467889999999999999999965 34455555555444444455555 568999999999988
Q ss_pred CcccchhhHHHhhccccCEEEEEEecc
Q psy2401 81 SKGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 81 ~~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.+.......++..+...|++++++++.
T Consensus 102 ~~D~~~r~~~~d~l~~~DLvL~l~~~~ 128 (296)
T COG3596 102 DKDAEHRQLYRDYLPKLDLVLWLIKAD 128 (296)
T ss_pred hhhHHHHHHHHHHhhhccEEEEeccCC
Confidence 777667777888899999999999984
No 252
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.17 E-value=3.6e-10 Score=106.82 Aligned_cols=83 Identities=18% Similarity=0.301 Sum_probs=61.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
++|+++|.+|+||||++|+|+|.. +.++.++.+|..+......+.+ ..+.+|||||+.+...
T Consensus 39 ~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G-----------------~~l~VIDTPGL~d~~~ 101 (313)
T TIGR00991 39 LTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG-----------------FTLNIIDTPGLIEGGY 101 (313)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC-----------------eEEEEEECCCCCchHH
Confidence 689999999999999999999985 4567777777666655555566 6899999999987532
Q ss_pred cccchhhHHHhhc------cccCEEEEEEec
Q psy2401 82 KGEGLGNKFLAHI------RETNIVIHVIRC 106 (363)
Q Consensus 82 ~~~~l~~~~l~~~------~~aD~il~Vvda 106 (363)
..+ +....+ ...|++|+|.+.
T Consensus 102 ~~e----~~~~~ik~~l~~~g~DvVLyV~rL 128 (313)
T TIGR00991 102 IND----QAVNIIKRFLLGKTIDVLLYVDRL 128 (313)
T ss_pred HHH----HHHHHHHHHhhcCCCCEEEEEecc
Confidence 222 222222 268999999765
No 253
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.16 E-value=5.4e-10 Score=105.26 Aligned_cols=64 Identities=20% Similarity=0.302 Sum_probs=42.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccC---------CCce-eecceeEEEEeCCccccccccccccccccceeEEEEe
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAEN---------YPFC-TIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVD 72 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~---------~p~~-t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvD 72 (363)
++|+++|.+|+|||||+|+|.+....... ++.+ +.......+..+|.. ..+.+||
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~---------------~~l~iiD 69 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVK---------------LKLTVID 69 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEE---------------EEEEEEe
Confidence 68999999999999999999987543221 1111 223333334444422 5799999
Q ss_pred eecccCCCC
Q psy2401 73 IAGLVSGAS 81 (363)
Q Consensus 73 tpGl~~~~~ 81 (363)
|||+.+...
T Consensus 70 TpGfgd~~~ 78 (276)
T cd01850 70 TPGFGDNIN 78 (276)
T ss_pred cCCcccccc
Confidence 999976543
No 254
>KOG0097|consensus
Probab=99.16 E-value=1.7e-10 Score=95.11 Aligned_cols=151 Identities=20% Similarity=0.235 Sum_probs=102.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCce-eecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFC-TIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~-t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
+|..|||.-|+|||.|+..++..++ .++.|.+ ........+++.+.. .++++|||+|..++..
T Consensus 12 fkyiiigdmgvgkscllhqftekkf-madcphtigvefgtriievsgqk---------------iklqiwdtagqerfra 75 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVEFGTRIIEVSGQK---------------IKLQIWDTAGQERFRA 75 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHH-hhcCCcccceecceeEEEecCcE---------------EEEEEeecccHHHHHH
Confidence 5788999999999999999997543 3344432 233444557777754 7899999999765432
Q ss_pred cccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHH
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIEL 161 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~ 161 (363)
...++.|.+-..++|.|...
T Consensus 76 -------vtrsyyrgaagalmvyditr----------------------------------------------------- 95 (215)
T KOG0097|consen 76 -------VTRSYYRGAAGALMVYDITR----------------------------------------------------- 95 (215)
T ss_pred -------HHHHHhccccceeEEEEehh-----------------------------------------------------
Confidence 45567799999999999831
Q ss_pred HHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHH
Q psy2401 162 LKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLE 241 (363)
Q Consensus 162 ~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e 241 (363)
.++.+.+..||...+.+. + ..-.+++++||+|+....+...++.+++.+++|..++..||++.
T Consensus 96 rstynhlsswl~dar~lt---------------n--pnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg 158 (215)
T KOG0097|consen 96 RSTYNHLSSWLTDARNLT---------------N--PNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTG 158 (215)
T ss_pred hhhhhhHHHHHhhhhccC---------------C--CceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEeccccc
Confidence 133444445554321110 0 22234556899997544445667888889999999999999987
Q ss_pred HHHhc
Q psy2401 242 EEISD 246 (363)
Q Consensus 242 ~~i~e 246 (363)
+++.+
T Consensus 159 ~nved 163 (215)
T KOG0097|consen 159 QNVED 163 (215)
T ss_pred CcHHH
Confidence 76544
No 255
>PLN03126 Elongation factor Tu; Provisional
Probab=99.16 E-value=1.5e-10 Score=116.71 Aligned_cols=82 Identities=24% Similarity=0.170 Sum_probs=57.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc----------------ccCCCceeecceeEEEEeCCccccccccccccccccce
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS----------------AENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPA 66 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~----------------~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~ 66 (363)
++++++|++++|||||+++|++.... .....+.|++.....+..++ .
T Consensus 82 ~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~-----------------~ 144 (478)
T PLN03126 82 VNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN-----------------R 144 (478)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC-----------------c
Confidence 57999999999999999999853111 11123555544433444433 5
Q ss_pred eEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 67 IIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 67 ~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
++.++|+||+.++ .......+..+|++++|||+.+
T Consensus 145 ~i~liDtPGh~~f-------~~~~~~g~~~aD~ailVVda~~ 179 (478)
T PLN03126 145 HYAHVDCPGHADY-------VKNMITGAAQMDGAILVVSGAD 179 (478)
T ss_pred EEEEEECCCHHHH-------HHHHHHHHhhCCEEEEEEECCC
Confidence 7899999997543 3366677788999999999954
No 256
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.15 E-value=4.1e-10 Score=116.28 Aligned_cols=98 Identities=14% Similarity=0.076 Sum_probs=53.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccc-cccc--cccccceeEEEEeeecccC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLN-NIVK--TKKIFPAIIKLVDIAGLVS 78 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~-~~~~--~~~~~~~~i~lvDtpGl~~ 78 (363)
+..|+++|++|+|||||+++|++.........+.|.+.....++.+.. .... .... +.+.....+.+|||||...
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVI--EKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeecccccc--ccccceeccccccccccCCEEEEECCChHH
Confidence 357999999999999999999986332222222332221111111100 0000 0000 0000001378999999865
Q ss_pred CCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 79 GASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 79 ~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
+.. .....++.+|++++|+|+.+
T Consensus 84 f~~-------~~~~~~~~aD~~IlVvDa~~ 106 (586)
T PRK04004 84 FTN-------LRKRGGALADIAILVVDINE 106 (586)
T ss_pred HHH-------HHHHhHhhCCEEEEEEECCC
Confidence 432 22245578999999999954
No 257
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.15 E-value=1.4e-10 Score=116.33 Aligned_cols=82 Identities=16% Similarity=0.107 Sum_probs=55.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccc-------------------------cC------CCceeecceeEEEEeCCccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISA-------------------------EN------YPFCTIEPNIGIIEVPDKRL 51 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~-------------------------~~------~p~~t~~~~~g~v~~~~~~~ 51 (363)
++++++|+.++|||||..+|+.....+ .+ ..+.|++.....+.+++
T Consensus 8 ~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~--- 84 (447)
T PLN00043 8 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK--- 84 (447)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC---
Confidence 579999999999999999886321000 00 12344444333333333
Q ss_pred cccccccccccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 52 KHLNNIVKTKKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 52 ~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
..++++|+||..++. +.....++.+|++++|||+..
T Consensus 85 --------------~~i~liDtPGh~df~-------~~~~~g~~~aD~aIlVVda~~ 120 (447)
T PLN00043 85 --------------YYCTVIDAPGHRDFI-------KNMITGTSQADCAVLIIDSTT 120 (447)
T ss_pred --------------EEEEEEECCCHHHHH-------HHHHhhhhhccEEEEEEEccc
Confidence 679999999975443 366677899999999999954
No 258
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.15 E-value=5.9e-10 Score=101.89 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHcC
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
||+++|++++|||||+++++..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~ 22 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQG 22 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999954
No 259
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.14 E-value=1.6e-10 Score=115.90 Aligned_cols=82 Identities=18% Similarity=0.142 Sum_probs=59.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc-------------------------cc------CCCceeecceeEEEEeCCccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS-------------------------AE------NYPFCTIEPNIGIIEVPDKRL 51 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~-------------------------~~------~~p~~t~~~~~g~v~~~~~~~ 51 (363)
++++++|+.++|||||+.+|+..... +. -..+.|++.....+.+++
T Consensus 8 ~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~--- 84 (446)
T PTZ00141 8 INLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK--- 84 (446)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC---
Confidence 67999999999999999999742100 00 113556665555555544
Q ss_pred cccccccccccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 52 KHLNNIVKTKKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 52 ~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
..++++||||..++ .+.....+..+|++++|||+..
T Consensus 85 --------------~~i~lIDtPGh~~f-------~~~~~~g~~~aD~ailVVda~~ 120 (446)
T PTZ00141 85 --------------YYFTIIDAPGHRDF-------IKNMITGTSQADVAILVVASTA 120 (446)
T ss_pred --------------eEEEEEECCChHHH-------HHHHHHhhhhcCEEEEEEEcCC
Confidence 67999999996543 3466777899999999999964
No 260
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.14 E-value=3.9e-10 Score=102.13 Aligned_cols=87 Identities=20% Similarity=0.264 Sum_probs=54.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccC----------C---------CceeecceeEEEEeCCccccccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAEN----------Y---------PFCTIEPNIGIIEVPDKRLKHLNNIVKTKKI 63 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~----------~---------p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~ 63 (363)
++|+++|++|+|||||+++|+........ + .+.|+......+.+.+. ..
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~------------~~ 68 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDS------------KG 68 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcC------------CC
Confidence 47999999999999999999864322110 0 11222222222222110 01
Q ss_pred cceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 64 FPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 64 ~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
....+++|||||..++. ......++.+|++++|+|+.+
T Consensus 69 ~~~~i~iiDtpG~~~f~-------~~~~~~~~~aD~~llVvD~~~ 106 (213)
T cd04167 69 KSYLFNIIDTPGHVNFM-------DEVAAALRLSDGVVLVVDVVE 106 (213)
T ss_pred CEEEEEEEECCCCcchH-------HHHHHHHHhCCEEEEEEECCC
Confidence 12679999999986543 255667789999999999853
No 261
>KOG0088|consensus
Probab=99.09 E-value=2.1e-10 Score=96.38 Aligned_cols=162 Identities=19% Similarity=0.164 Sum_probs=105.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeec--ceeEEEEeCCccccccccccccccccceeEEEEeeecccCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIE--PNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSG 79 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~--~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
.+|++++|..-+|||||.-.....++.... -+|+. .....+.+.|.| +.+.+|||+|..++
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kH--lsTlQASF~~kk~n~ed~r---------------a~L~IWDTAGQErf 75 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKH--LSTLQASFQNKKVNVEDCR---------------ADLHIWDTAGQERF 75 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhh--HHHHHHHHhhcccccccce---------------eeeeeeeccchHhh
Confidence 379999999999999999888765433221 12222 234456666765 78999999998776
Q ss_pred CCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhH
Q psy2401 80 ASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSI 159 (363)
Q Consensus 80 ~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~ 159 (363)
...+. -+.|.++.+++|.|..+.
T Consensus 76 HALGP-------IYYRgSnGalLVyDITDr-------------------------------------------------- 98 (218)
T KOG0088|consen 76 HALGP-------IYYRGSNGALLVYDITDR-------------------------------------------------- 98 (218)
T ss_pred hccCc-------eEEeCCCceEEEEeccch--------------------------------------------------
Confidence 55433 345899999999998531
Q ss_pred HHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHH
Q psy2401 160 ELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAK 239 (363)
Q Consensus 160 ~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~ 239 (363)
+.+++++.|..+ ++.. +=+....++|+||.|+.....--.++.+.+++.-|..++.+||+
T Consensus 99 ---dSFqKVKnWV~E----------------lr~m-lGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk 158 (218)
T KOG0088|consen 99 ---DSFQKVKNWVLE----------------LRTM-LGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAK 158 (218)
T ss_pred ---HHHHHHHHHHHH----------------HHHH-hCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccc
Confidence 223334443321 1111 11455678899999974322234556667777778889999999
Q ss_pred HHHHHhcCCHHHHHHHHh
Q psy2401 240 LEEEISDLNNIDKKFFLD 257 (363)
Q Consensus 240 ~e~~i~el~~~~~~~~l~ 257 (363)
-...|+++.+.+-...+|
T Consensus 159 ~N~Gi~elFe~Lt~~MiE 176 (218)
T KOG0088|consen 159 DNVGISELFESLTAKMIE 176 (218)
T ss_pred cccCHHHHHHHHHHHHHH
Confidence 877777776555444443
No 262
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.08 E-value=8.3e-10 Score=110.66 Aligned_cols=98 Identities=20% Similarity=0.165 Sum_probs=58.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCc---cccCCCceeecceeEEEEe---------------CCccc-cccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKI---SAENYPFCTIEPNIGIIEV---------------PDKRL-KHLNNIVKTKKI 63 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~---~~~~~p~~t~~~~~g~v~~---------------~~~~~-~~l~~~~~~~~~ 63 (363)
++||++|+-..|||||+.+||+... ..+-..+.|++.......+ +.... ...++.+.....
T Consensus 35 ~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (460)
T PTZ00327 35 INIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMT 114 (460)
T ss_pred EEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccccc
Confidence 6899999999999999999998522 2222335555533322211 00000 000000000111
Q ss_pred cceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecc
Q psy2401 64 FPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 64 ~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
....+.++|+||.. .+.+.+++.+..+|++++|||+.
T Consensus 115 ~~~~i~~IDtPGH~-------~fi~~m~~g~~~~D~alLVVda~ 151 (460)
T PTZ00327 115 LKRHVSFVDCPGHD-------ILMATMLNGAAVMDAALLLIAAN 151 (460)
T ss_pred ccceEeeeeCCCHH-------HHHHHHHHHHhhCCEEEEEEECC
Confidence 12478999999964 34456677788999999999995
No 263
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.08 E-value=7.3e-10 Score=119.19 Aligned_cols=143 Identities=20% Similarity=0.115 Sum_probs=84.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcccc----------CC------CceeecceeEEEEeCCccccccccccccccccce
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAE----------NY------PFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPA 66 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~----------~~------p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~ 66 (363)
++||++|+.++|||||.++|+.....+. ++ .+.|+......+.+.... ..+.......+....
T Consensus 20 rni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 98 (843)
T PLN00116 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-ESLKDFKGERDGNEY 98 (843)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccc-ccccccccccCCCce
Confidence 5899999999999999999975421110 10 133444333344442100 000000000011136
Q ss_pred eEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHh-hhh
Q psy2401 67 IIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEK-YID 145 (363)
Q Consensus 67 ~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~-~~~ 145 (363)
.++++||||+.++.. .....++.+|++++|||+.++.. ..++..|..+..... ++.
T Consensus 99 ~inliDtPGh~dF~~-------e~~~al~~~D~ailVvda~~Gv~----------------~~t~~~~~~~~~~~~p~i~ 155 (843)
T PLN00116 99 LINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIEGVC----------------VQTETVLRQALGERIRPVL 155 (843)
T ss_pred EEEEECCCCHHHHHH-------HHHHHHhhcCEEEEEEECCCCCc----------------ccHHHHHHHHHHCCCCEEE
Confidence 789999999876544 66788899999999999965432 223555655544444 478
Q ss_pred hhhccccc-------CCchhHHHHHHHHHHH
Q psy2401 146 KENKKFFL-------KNEHSIELLKLLKRII 169 (363)
Q Consensus 146 ~i~k~~~~-------g~~~~~~~~~~l~~i~ 169 (363)
.+||+++. +.....++..+++++.
T Consensus 156 ~iNK~D~~~~~~~~~~~~~~~~~~~vi~~in 186 (843)
T PLN00116 156 TVNKMDRCFLELQVDGEEAYQTFSRVIENAN 186 (843)
T ss_pred EEECCcccchhhcCCHHHHHHHHHHHHHHHH
Confidence 89999664 1111245566777776
No 264
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.07 E-value=8.9e-09 Score=93.30 Aligned_cols=88 Identities=20% Similarity=0.152 Sum_probs=58.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc-cc-CCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS-AE-NYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~-~~-~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
++|.|+|.+||||||+.|.|+|.... .+ ....+|..+......+.+ ..+.++||||+.+..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~VIDTPGl~d~~ 63 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG-----------------RQVTVIDTPGLFDSD 63 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT-----------------EEEEEEE--SSEETT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc-----------------eEEEEEeCCCCCCCc
Confidence 48999999999999999999998543 32 234567778778788888 679999999997655
Q ss_pred CcccchhhHHHh----hccccCEEEEEEecc
Q psy2401 81 SKGEGLGNKFLA----HIRETNIVIHVIRCF 107 (363)
Q Consensus 81 ~~~~~l~~~~l~----~~~~aD~il~Vvda~ 107 (363)
...+...+.+.. .....+++|+|++..
T Consensus 64 ~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~ 94 (212)
T PF04548_consen 64 GSDEEIIREIKRCLSLCSPGPHAFLLVIPLG 94 (212)
T ss_dssp EEHHHHHHHHHHHHHHTTT-ESEEEEEEETT
T ss_pred ccHHHHHHHHHHHHHhccCCCeEEEEEEecC
Confidence 443333333322 234589999999873
No 265
>PTZ00416 elongation factor 2; Provisional
Probab=99.07 E-value=1.8e-09 Score=116.04 Aligned_cols=141 Identities=20% Similarity=0.104 Sum_probs=85.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcccc-CC---------------CceeecceeEEEEeCCccccccccccccccccce
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAE-NY---------------PFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPA 66 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~-~~---------------p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~ 66 (363)
.+|+++|+.++|||||.++|+.....++ .. .++|++.....+.+.... .+..+....
T Consensus 20 rni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~-------~~~~~~~~~ 92 (836)
T PTZ00416 20 RNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDL-------EDGDDKQPF 92 (836)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeeccc-------ccccCCCce
Confidence 5899999999999999999986421111 11 123333322233332100 000011125
Q ss_pred eEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHh-hhh
Q psy2401 67 IIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEK-YID 145 (363)
Q Consensus 67 ~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~-~~~ 145 (363)
.++++||||+.++. ......++.+|++++|||+.++.. .+++.+|..+..... ++.
T Consensus 93 ~i~liDtPG~~~f~-------~~~~~al~~~D~ailVvda~~g~~----------------~~t~~~~~~~~~~~~p~iv 149 (836)
T PTZ00416 93 LINLIDSPGHVDFS-------SEVTAALRVTDGALVVVDCVEGVC----------------VQTETVLRQALQERIRPVL 149 (836)
T ss_pred EEEEEcCCCHHhHH-------HHHHHHHhcCCeEEEEEECCCCcC----------------ccHHHHHHHHHHcCCCEEE
Confidence 79999999987643 366788899999999999965421 123555655544444 468
Q ss_pred hhhcccccCC-------chhHHHHHHHHHHHhhhc
Q psy2401 146 KENKKFFLKN-------EHSIELLKLLKRIIFNLN 173 (363)
Q Consensus 146 ~i~k~~~~g~-------~~~~~~~~~l~~i~~~L~ 173 (363)
.+||+++... ....++..+++++.+.|.
T Consensus 150 ~iNK~D~~~~~~~~~~~~~~~~~~~ii~~in~~l~ 184 (836)
T PTZ00416 150 FINKVDRAILELQLDPEEIYQNFVKTIENVNVIIA 184 (836)
T ss_pred EEEChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999965411 112456677888887765
No 266
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.05 E-value=1.3e-09 Score=95.82 Aligned_cols=80 Identities=26% Similarity=0.346 Sum_probs=49.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
..|.|+|++|||||+||..|+..... . ..|++.++.+ ..+.+. ....+.++|+||..+-.
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~-~--T~tS~e~n~~-~~~~~~--------------~~~~~~lvD~PGH~rlr-- 63 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTV-P--TVTSMENNIA-YNVNNS--------------KGKKLRLVDIPGHPRLR-- 63 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS------B---SSEEEE-CCGSST--------------CGTCECEEEETT-HCCC--
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcC-C--eeccccCCce-EEeecC--------------CCCEEEEEECCCcHHHH--
Confidence 35889999999999999999975211 1 1223333332 222111 01568999999986533
Q ss_pred ccchhhHHHhh---ccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAH---IRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~---~~~aD~il~Vvda~ 107 (363)
.+++.. +..+.+|++|||++
T Consensus 64 -----~~~~~~~~~~~~~k~IIfvvDSs 86 (181)
T PF09439_consen 64 -----SKLLDELKYLSNAKGIIFVVDSS 86 (181)
T ss_dssp -----HHHHHHHHHHGGEEEEEEEEETT
T ss_pred -----HHHHHhhhchhhCCEEEEEEeCc
Confidence 355544 78899999999985
No 267
>KOG0070|consensus
Probab=99.02 E-value=2e-09 Score=93.20 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=61.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|.++|.-||||||++..|-...... ..| |+..+.-.+.+.+ .++++||+-|..+...
T Consensus 18 ~~IlmlGLD~AGKTTILykLk~~E~vt-tvP--TiGfnVE~v~ykn-----------------~~f~vWDvGGq~k~R~- 76 (181)
T KOG0070|consen 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TVP--TIGFNVETVEYKN-----------------ISFTVWDVGGQEKLRP- 76 (181)
T ss_pred EEEEEEeccCCCceeeeEeeccCCccc-CCC--ccccceeEEEEcc-----------------eEEEEEecCCCccccc-
Confidence 789999999999999999886543221 134 6677777888887 7899999999855444
Q ss_pred ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
-...+.++.+++|+|||.++
T Consensus 77 ------lW~~Y~~~t~~lIfVvDS~D 96 (181)
T KOG0070|consen 77 ------LWKHYFQNTQGLIFVVDSSD 96 (181)
T ss_pred ------chhhhccCCcEEEEEEeCCc
Confidence 33466799999999999853
No 268
>KOG0462|consensus
Probab=99.01 E-value=2.1e-09 Score=106.38 Aligned_cols=148 Identities=18% Similarity=0.128 Sum_probs=100.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc---------------ccCCCceeecceeEEEEeCCcccccccccccccccccee
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS---------------AENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAI 67 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~---------------~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~ 67 (363)
.+++||-+---|||||..+|...... +.-..|.|+..+...+.|.+... ..
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~--------------yl 126 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQS--------------YL 126 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCc--------------eE
Confidence 57899999999999999999643111 22235888888888777765221 67
Q ss_pred EEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhh
Q psy2401 68 IKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKE 147 (363)
Q Consensus 68 i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i 147 (363)
+++|||||..++..+ .-..+..||.+|+||||+++....+
T Consensus 127 LNLIDTPGHvDFs~E-------VsRslaac~G~lLvVDA~qGvqAQT--------------------------------- 166 (650)
T KOG0462|consen 127 LNLIDTPGHVDFSGE-------VSRSLAACDGALLVVDASQGVQAQT--------------------------------- 166 (650)
T ss_pred EEeecCCCcccccce-------ehehhhhcCceEEEEEcCcCchHHH---------------------------------
Confidence 999999999998763 3355677999999999987542111
Q ss_pred hcccccCCchhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCC-CchHHHHHHHHHH
Q psy2401 148 NKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGF-KNNLLLDQLKIYA 226 (363)
Q Consensus 148 ~k~~~~g~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~-~~~~~~~~i~~~~ 226 (363)
+....- .+-..-.+|.|+||.|.+. .++.-...+++.+
T Consensus 167 -----------------~anf~l------------------------Afe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF 205 (650)
T KOG0462|consen 167 -----------------VANFYL------------------------AFEAGLAIIPVLNKIDLPSADPERVENQLFELF 205 (650)
T ss_pred -----------------HHHHHH------------------------HHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHh
Confidence 000000 1113345667899999864 3444556677777
Q ss_pred hcCCCcEEEeeHHHHHHHh
Q psy2401 227 HNQNIPIIIICAKLEEEIS 245 (363)
Q Consensus 227 ~~~~~~~i~~sa~~e~~i~ 245 (363)
...+.+++.+||+...++.
T Consensus 206 ~~~~~~~i~vSAK~G~~v~ 224 (650)
T KOG0462|consen 206 DIPPAEVIYVSAKTGLNVE 224 (650)
T ss_pred cCCccceEEEEeccCccHH
Confidence 7677789999999655443
No 269
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.99 E-value=4.1e-09 Score=91.27 Aligned_cols=100 Identities=26% Similarity=0.295 Sum_probs=57.9
Q ss_pred EEEEeCCCCcHHHHHHHHHcCCcc-ccCCCceeecceeEEEEeCCc---------------c---cccccc---------
Q psy2401 5 CGLIGLPNVGKSTLFNALTKLKIS-AENYPFCTIEPNIGIIEVPDK---------------R---LKHLNN--------- 56 (363)
Q Consensus 5 i~lvG~~g~GKSTL~n~Lt~~~~~-~~~~p~~t~~~~~g~v~~~~~---------------~---~~~l~~--------- 56 (363)
|+++|..++|||||+|+|+|.... .+.-| +|..|..-...-... . +..+..
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~-~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGP-CTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSI 79 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSS-TTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccc-cccceeEEEecccCccccccccccccccccchhhHHHHHHhhhcccccc
Confidence 789999999999999999998633 33333 333333211110000 0 000000
Q ss_pred ------------ccccccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 57 ------------IVKTKKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 57 ------------~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.+.+.......+.|+||||+......... .....+..+|++++|+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~---~~~~~~~~~d~vi~V~~~~~ 140 (168)
T PF00350_consen 80 EGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTE---ITEEYLPKADVVIFVVDANQ 140 (168)
T ss_dssp HTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSH---HHHHHHSTTEEEEEEEETTS
T ss_pred cccccccccceeEEeeccccccceEEEeCCccccchhhhHH---HHHHhhccCCEEEEEeccCc
Confidence 00001123356899999999764443332 34455589999999999853
No 270
>KOG1145|consensus
Probab=98.98 E-value=3.3e-09 Score=104.98 Aligned_cols=83 Identities=22% Similarity=0.210 Sum_probs=63.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.-|-|+|+---|||||+.+|-++.+.....-|.|.+.....+.+++. ..++|.||||...+...
T Consensus 154 PVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G----------------~~iTFLDTPGHaAF~aM 217 (683)
T KOG1145|consen 154 PVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG----------------KSITFLDTPGHAAFSAM 217 (683)
T ss_pred CeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC----------------CEEEEecCCcHHHHHHH
Confidence 45789999999999999999998777777788888877667777654 57999999997533221
Q ss_pred ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
--+..+.+|.+++||-+.+
T Consensus 218 -------RaRGA~vtDIvVLVVAadD 236 (683)
T KOG1145|consen 218 -------RARGANVTDIVVLVVAADD 236 (683)
T ss_pred -------HhccCccccEEEEEEEccC
Confidence 0123355899999999854
No 271
>KOG0395|consensus
Probab=98.97 E-value=2.9e-09 Score=95.24 Aligned_cols=82 Identities=20% Similarity=0.194 Sum_probs=59.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.|++++|.+|+|||+|...+...... ..|..|.-+.....+.+++.. ..+.++||+|..++..
T Consensus 4 ~kvvvlG~~gVGKSal~~qf~~~~f~-~~y~ptied~y~k~~~v~~~~---------------~~l~ilDt~g~~~~~~- 66 (196)
T KOG0395|consen 4 YKVVVLGAGGVGKSALTIQFLTGRFV-EDYDPTIEDSYRKELTVDGEV---------------CMLEILDTAGQEEFSA- 66 (196)
T ss_pred eEEEEECCCCCCcchheeeecccccc-cccCCCccccceEEEEECCEE---------------EEEEEEcCCCcccChH-
Confidence 68999999999999999888875433 335444445556667777654 7889999999443332
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+. -..++.+|+.++|.++.
T Consensus 67 ---~~---~~~~~~~~gF~lVysit 85 (196)
T KOG0395|consen 67 ---MR---DLYIRNGDGFLLVYSIT 85 (196)
T ss_pred ---HH---HHhhccCcEEEEEEECC
Confidence 21 24568899999999984
No 272
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.97 E-value=7.6e-09 Score=94.62 Aligned_cols=73 Identities=22% Similarity=0.314 Sum_probs=50.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEE---EeCCccccccccccccccccceeEEEEeeecccCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGII---EVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSG 79 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v---~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
..|+++|++|+|||||+|+|.+.... ++.....|.+ ...+ .++.++||||..
T Consensus 40 ~~i~ivG~~~~GKstl~~~l~~~~~~------~~~~~~~g~i~i~~~~~-----------------~~i~~vDtPg~~-- 94 (225)
T cd01882 40 LVVAVVGPPGVGKTTLIKSLVKNYTK------QNISDIKGPITVVTGKK-----------------RRLTFIECPNDI-- 94 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhccc------CccccccccEEEEecCC-----------------ceEEEEeCCchH--
Confidence 56999999999999999999874111 1111222221 1122 678999999843
Q ss_pred CCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 80 ASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 80 ~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
...+..++.+|++++|+|++.
T Consensus 95 --------~~~l~~ak~aDvVllviDa~~ 115 (225)
T cd01882 95 --------NAMIDIAKVADLVLLLIDASF 115 (225)
T ss_pred --------HHHHHHHHhcCEEEEEEecCc
Confidence 255667789999999999853
No 273
>KOG0091|consensus
Probab=98.95 E-value=1.4e-09 Score=91.94 Aligned_cols=154 Identities=17% Similarity=0.158 Sum_probs=98.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeC-CccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVP-DKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~-~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
++..+||.+-+|||+|+.-.|..+...-.-|....+.-...+++. |.| .++++|||+|..++.+
T Consensus 9 frlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~r---------------iklqlwdtagqerfrs 73 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYR---------------IKLQLWDTAGQERFRS 73 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcE---------------EEEEEeeccchHHHHH
Confidence 578899999999999999999754332112222222211223332 222 7899999999876654
Q ss_pred cccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHH
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIEL 161 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~ 161 (363)
-..++.|++=.+++|.|.+..
T Consensus 74 -------itksyyrnsvgvllvyditnr---------------------------------------------------- 94 (213)
T KOG0091|consen 74 -------ITKSYYRNSVGVLLVYDITNR---------------------------------------------------- 94 (213)
T ss_pred -------HHHHHhhcccceEEEEeccch----------------------------------------------------
Confidence 445677999999999998531
Q ss_pred HHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccE-EEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHH
Q psy2401 162 LKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPI-IFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKL 240 (363)
Q Consensus 162 ~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~-i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~ 240 (363)
+.++.+..|+++. .+. ... ..|++ ++|+.|.|+.....-..++.++++..+|..+|.+||+.
T Consensus 95 -~sfehv~~w~~ea--------------~m~-~q~-P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~ 157 (213)
T KOG0091|consen 95 -ESFEHVENWVKEA--------------AMA-TQG-PDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKN 157 (213)
T ss_pred -hhHHHHHHHHHHH--------------HHh-cCC-CCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccC
Confidence 3344555555421 111 111 23333 34689999753334456777888888999999999998
Q ss_pred HHHHhcC
Q psy2401 241 EEEISDL 247 (363)
Q Consensus 241 e~~i~el 247 (363)
..++.+.
T Consensus 158 g~NVeEA 164 (213)
T KOG0091|consen 158 GCNVEEA 164 (213)
T ss_pred CCcHHHH
Confidence 7766543
No 274
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.94 E-value=6.8e-09 Score=93.74 Aligned_cols=83 Identities=24% Similarity=0.162 Sum_probs=55.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|++|||||||++++.+........|. ......+.......+ ...+.+|||+|..+...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~--------------~~~~~~~Dt~gq~~~~~- 69 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPT-IGNLDPAKTIEPYRR--------------NIKLQLWDTAGQEEYRS- 69 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCc-eeeeeEEEEEEeCCC--------------EEEEEeecCCCHHHHHH-
Confidence 69999999999999999999986444332222 122222222222210 16789999999865432
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
..-.+.+.++++++|+|..
T Consensus 70 ------~~~~y~~~~~~~l~~~d~~ 88 (219)
T COG1100 70 ------LRPEYYRGANGILIVYDST 88 (219)
T ss_pred ------HHHHHhcCCCEEEEEEecc
Confidence 2335558999999999984
No 275
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.94 E-value=2e-08 Score=92.48 Aligned_cols=105 Identities=17% Similarity=0.244 Sum_probs=58.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeE-----------EEEeCCccccc---cccc--------ccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIG-----------IIEVPDKRLKH---LNNI--------VKT 60 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g-----------~v~~~~~~~~~---l~~~--------~~~ 60 (363)
.+++++|++|+||||++++|+|.......--.+|..|..- .+...+..+.. +... ...
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~ 106 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGT 106 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhcCC
Confidence 4799999999999999999998642221122233333322 22222221111 1110 000
Q ss_pred cc-------------ccceeEEEEeeecccCCCCcc------cchhhHHHhhccc-cCEEEEEEecc
Q psy2401 61 KK-------------IFPAIIKLVDIAGLVSGASKG------EGLGNKFLAHIRE-TNIVIHVIRCF 107 (363)
Q Consensus 61 ~~-------------~~~~~i~lvDtpGl~~~~~~~------~~l~~~~l~~~~~-aD~il~Vvda~ 107 (363)
.+ ..-..+.++||||+......+ ..+.+....++++ .+.+++|+|+.
T Consensus 107 ~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~ 173 (240)
T smart00053 107 NKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPAN 173 (240)
T ss_pred CCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECC
Confidence 00 011478999999997542222 1233455667774 56999999984
No 276
>KOG0083|consensus
Probab=98.94 E-value=2.3e-10 Score=93.50 Aligned_cols=147 Identities=17% Similarity=0.152 Sum_probs=90.6
Q ss_pred EEeCCCCcHHHHHHHHHcCCccccCCC-ceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcccc
Q psy2401 7 LIGLPNVGKSTLFNALTKLKISAENYP-FCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKGEG 85 (363)
Q Consensus 7 lvG~~g~GKSTL~n~Lt~~~~~~~~~p-~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~ 85 (363)
++|.+++|||.|+-..-....-..++- ...++.....+.++|.. .++++|||+|..++.+
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~k---------------vklqiwdtagqerfrs---- 62 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKK---------------VKLQIWDTAGQERFRS---- 62 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcE---------------EEEEEeeccchHHHhh----
Confidence 689999999998755443222223321 12334444456666644 7899999999877665
Q ss_pred hhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHHHHH
Q psy2401 86 LGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELLKLL 165 (363)
Q Consensus 86 l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~~~l 165 (363)
...++.|.||+++++.|... .+.+
T Consensus 63 ---vt~ayyrda~allllydian-----------------------------------------------------kasf 86 (192)
T KOG0083|consen 63 ---VTHAYYRDADALLLLYDIAN-----------------------------------------------------KASF 86 (192)
T ss_pred ---hhHhhhcccceeeeeeeccc-----------------------------------------------------chhH
Confidence 55577799999999999731 2345
Q ss_pred HHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHHHHh
Q psy2401 166 KRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEEEIS 245 (363)
Q Consensus 166 ~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~~i~ 245 (363)
+.|+.||.+- ..|.. ......+++||.|..-......+.-+++.+.+++|++.+||++..++.
T Consensus 87 dn~~~wlsei----------------~ey~k-~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd 149 (192)
T KOG0083|consen 87 DNCQAWLSEI----------------HEYAK-EAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVD 149 (192)
T ss_pred HHHHHHHHHH----------------HHHHH-hhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHh
Confidence 5666666531 11100 222344589999962111111233345556689999999999776643
No 277
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.94 E-value=1.2e-09 Score=94.18 Aligned_cols=54 Identities=33% Similarity=0.439 Sum_probs=43.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC-CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL-KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGL 76 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~-~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl 76 (363)
.+++++|.||+|||||+|+|.+. .+.++++|++|...+ .+..+ ..+.++||||+
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~--~~~~~------------------~~~~liDtPGi 157 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQ--YITLM------------------KRIYLIDCPGV 157 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEE--EEEcC------------------CCEEEEECcCC
Confidence 46899999999999999999997 567999999987644 22322 34789999995
No 278
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=9.6e-09 Score=99.16 Aligned_cols=83 Identities=19% Similarity=0.175 Sum_probs=55.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccc-------------------------------cCCCceeecceeEEEEeCCccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISA-------------------------------ENYPFCTIEPNIGIIEVPDKRL 51 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~-------------------------------~~~p~~t~~~~~g~v~~~~~~~ 51 (363)
++++++|+..+|||||+-.|.-....+ .-..|.|++.....++-+-
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k--- 84 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK--- 84 (428)
T ss_pred eEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC---
Confidence 689999999999999999996211000 0112444443333333222
Q ss_pred cccccccccccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccC
Q psy2401 52 KHLNNIVKTKKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKD 109 (363)
Q Consensus 52 ~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~ 109 (363)
..++++|+||.-++- ..+...+.+||+.++||||..+
T Consensus 85 --------------~~~tIiDaPGHrdFv-------knmItGasqAD~aVLVV~a~~~ 121 (428)
T COG5256 85 --------------YNFTIIDAPGHRDFV-------KNMITGASQADVAVLVVDARDG 121 (428)
T ss_pred --------------ceEEEeeCCchHHHH-------HHhhcchhhccEEEEEEECCCC
Confidence 569999999954332 3566777899999999999654
No 279
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=2.1e-08 Score=97.56 Aligned_cols=82 Identities=23% Similarity=0.292 Sum_probs=65.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC---CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL---KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSG 79 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~---~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
|-|+..|+---|||||+.++++. ..+.....++|++......+.++ ..+.|+|+||+.++
T Consensus 1 mii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d-----------------~~~~fIDvpgh~~~ 63 (447)
T COG3276 1 MIIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED-----------------GVMGFIDVPGHPDF 63 (447)
T ss_pred CeEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC-----------------CceEEeeCCCcHHH
Confidence 46889999999999999999987 24455667889888777777766 57899999998654
Q ss_pred CCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 80 ASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 80 ~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.+ ..+..+...|.+++||++.+
T Consensus 64 i~-------~miag~~~~d~alLvV~~de 85 (447)
T COG3276 64 IS-------NLLAGLGGIDYALLVVAADE 85 (447)
T ss_pred HH-------HHHhhhcCCceEEEEEeCcc
Confidence 43 66777788999999999954
No 280
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.85 E-value=4.2e-09 Score=90.52 Aligned_cols=54 Identities=37% Similarity=0.533 Sum_probs=45.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGL 76 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl 76 (363)
.+++++|.||+|||||+|+|++.. ..+++.|++|..+..... + ..+.++||||+
T Consensus 101 ~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~--~------------------~~~~liDtPG~ 155 (155)
T cd01849 101 ITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL--D------------------NKIKLLDTPGI 155 (155)
T ss_pred cEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe--c------------------CCEEEEECCCC
Confidence 579999999999999999999974 678899999998875433 1 35899999995
No 281
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=2.2e-08 Score=99.63 Aligned_cols=86 Identities=17% Similarity=0.145 Sum_probs=62.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
+.-|.++||--.|||||+-.|-+..+....--+.|.+.-...++++.... ..+.|+||||...+..
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~--------------~~itFiDTPGHeAFt~ 70 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKI--------------PGITFIDTPGHEAFTA 70 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCC--------------ceEEEEcCCcHHHHHH
Confidence 34589999999999999999998777766667788887777777651000 4799999999754332
Q ss_pred cccchhhHHHhhccccCEEEEEEeccc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.. -.-..-+|.+++||++.+
T Consensus 71 mR-------aRGa~vtDIaILVVa~dD 90 (509)
T COG0532 71 MR-------ARGASVTDIAILVVAADD 90 (509)
T ss_pred HH-------hcCCccccEEEEEEEccC
Confidence 10 012245899999999954
No 282
>PRK13768 GTPase; Provisional
Probab=98.81 E-value=2.9e-08 Score=92.41 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=29.2
Q ss_pred eeEEEEeeecccCCCCcccchhhHHHhhccc--cCEEEEEEecc
Q psy2401 66 AIIKLVDIAGLVSGASKGEGLGNKFLAHIRE--TNIVIHVIRCF 107 (363)
Q Consensus 66 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~--aD~il~Vvda~ 107 (363)
..+.++|+||..+.... ...++.+...+.. ++++++|+|++
T Consensus 97 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~~~~ii~liD~~ 139 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF-RESGRKLVERLSGSSKSVVVFLIDAV 139 (253)
T ss_pred CCEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcCCeEEEEEechH
Confidence 36889999998764432 3344556666554 89999999985
No 283
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.81 E-value=6.9e-09 Score=99.82 Aligned_cols=59 Identities=34% Similarity=0.456 Sum_probs=49.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC-CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL-KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~-~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.++++||.||||||||+|+|.+. .+.++++||+|...+ .+... ..+.++||||+.....
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q--~i~~~------------------~~i~LlDtPGii~~~~ 192 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQ--WIKLD------------------DGIYLLDTPGIIPPKF 192 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceE--EEEcC------------------CCeEEecCCCcCCCCc
Confidence 67999999999999999999998 578999999997765 34443 3489999999986544
No 284
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.79 E-value=1e-08 Score=97.29 Aligned_cols=59 Identities=34% Similarity=0.464 Sum_probs=48.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.+++++|.||||||||+|+|++.. +.+++.||+|..++ .+.++ ..+.++||||+.....
T Consensus 122 ~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~------------------~~~~l~DtPGi~~~~~ 181 (287)
T PRK09563 122 IRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQ--WIKLG------------------KGLELLDTPGILWPKL 181 (287)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEE--EEEeC------------------CcEEEEECCCcCCCCC
Confidence 579999999999999999999985 58999999998875 34432 3588999999976543
No 285
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.78 E-value=1.9e-08 Score=102.74 Aligned_cols=88 Identities=26% Similarity=0.248 Sum_probs=59.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.+|+++|++|+||||++|+|++.. +.++.++.+|.........+.+ ..+.+|||||+.+...
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG-----------------~~L~VIDTPGL~dt~~ 181 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG-----------------VKIRVIDTPGLKSSAS 181 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC-----------------ceEEEEECCCCCcccc
Confidence 589999999999999999999984 5566654444444444444555 6799999999987532
Q ss_pred cc---cchhhHHHhhcc--ccCEEEEEEecc
Q psy2401 82 KG---EGLGNKFLAHIR--ETNIVIHVIRCF 107 (363)
Q Consensus 82 ~~---~~l~~~~l~~~~--~aD~il~Vvda~ 107 (363)
.. +.+.+.....+. .+|++|+|.+..
T Consensus 182 dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd 212 (763)
T TIGR00993 182 DQSKNEKILSSVKKFIKKNPPDIVLYVDRLD 212 (763)
T ss_pred chHHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Confidence 21 122222222323 479999998753
No 286
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.78 E-value=3.2e-08 Score=96.71 Aligned_cols=89 Identities=19% Similarity=0.127 Sum_probs=64.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc---------------ccCCCceeecceeEEEEeCCcccccccccccccccccee
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS---------------AENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAI 67 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~---------------~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~ 67 (363)
++..||-+---|||||-.+|...... +....|.|+..+...+.+.... --...
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~------------g~~Y~ 77 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKD------------GETYV 77 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCC------------CCEEE
Confidence 46889999999999999999643111 2223588888888777664311 00167
Q ss_pred EEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCC
Q psy2401 68 IKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDD 110 (363)
Q Consensus 68 i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~ 110 (363)
++++||||.+++.-. .-+.+..|..+++||||+++.
T Consensus 78 lnlIDTPGHVDFsYE-------VSRSLAACEGalLvVDAsQGv 113 (603)
T COG0481 78 LNLIDTPGHVDFSYE-------VSRSLAACEGALLVVDASQGV 113 (603)
T ss_pred EEEcCCCCccceEEE-------ehhhHhhCCCcEEEEECccch
Confidence 999999999988763 335557789999999998653
No 287
>KOG0464|consensus
Probab=98.77 E-value=1.5e-08 Score=97.31 Aligned_cols=201 Identities=15% Similarity=0.112 Sum_probs=131.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHH---cCC-----cc----ccC------CCceeecceeEEEEeCCcccccccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALT---KLK-----IS----AEN------YPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIF 64 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt---~~~-----~~----~~~------~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~ 64 (363)
.+||++.+-.+||||.-..|. |+. +. +.+ ..+.|+......+.|.|
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg---------------- 101 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKG---------------- 101 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccccc----------------
Confidence 579999999999999998885 221 11 111 14667666666678888
Q ss_pred ceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHh-h
Q psy2401 65 PAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEK-Y 143 (363)
Q Consensus 65 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~-~ 143 (363)
..++++||||.+++.- +.-..+|..|.++.|+|++.+.+..+ --+|+..+..+. +
T Consensus 102 -~rinlidtpghvdf~l-------everclrvldgavav~dasagve~qt----------------ltvwrqadk~~ip~ 157 (753)
T KOG0464|consen 102 -HRINLIDTPGHVDFRL-------EVERCLRVLDGAVAVFDASAGVEAQT----------------LTVWRQADKFKIPA 157 (753)
T ss_pred -ceEeeecCCCcceEEE-------EHHHHHHHhcCeEEEEeccCCcccce----------------eeeehhccccCCch
Confidence 6799999999988765 34466688899999999987654321 224555555555 5
Q ss_pred hhhhhcccccCCchhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHH-hhh-cccccccEEEecccccc-CC-------
Q psy2401 144 IDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSI-KFL-NLLTIKPIIFVANVKEN-GF------- 213 (363)
Q Consensus 144 ~~~i~k~~~~g~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~-~~~-~~l~~kp~i~v~Nk~d~-~~------- 213 (363)
.-++|||+ +..+++...++.+.+-|........+|+++.. .+ +++ +.+..+..+--+|-.|- ++
T Consensus 158 ~~finkmd----k~~anfe~avdsi~ekl~ak~l~l~lpi~eak--~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle 231 (753)
T KOG0464|consen 158 HCFINKMD----KLAANFENAVDSIEEKLGAKALKLQLPIGEAK--GFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLE 231 (753)
T ss_pred hhhhhhhh----hhhhhhhhHHHHHHHHhCCceEEEEecccccc--cccchHHHHHHHhhccCCCCCCccccccCCcccc
Confidence 67899994 44457788889999988876666667776442 33 444 33444444333454332 11
Q ss_pred -CchHHHHHHHHHHhcCCCcEEEeeHHHHHHHhcCCHHHHHHHHhhcC
Q psy2401 214 -KNNLLLDQLKIYAHNQNIPIIIICAKLEEEISDLNNIDKKFFLDNLG 260 (363)
Q Consensus 214 -~~~~~~~~i~~~~~~~~~~~i~~sa~~e~~i~el~~~~~~~~l~~~~ 260 (363)
...+..+.+.+. ...+.+.+++++++-+..||+++.
T Consensus 232 ~ndpel~e~~ae~-----------knal~~qlad~~~dfad~~ldef~ 268 (753)
T KOG0464|consen 232 KNDPELAEELAEA-----------KNALCEQLADLDADFADKFLDEFD 268 (753)
T ss_pred cCCHHHHHHHHHH-----------HHHHHHHHhhccHHHHHHHHHHhh
Confidence 122344444443 345788899998888888887653
No 288
>KOG0071|consensus
Probab=98.75 E-value=1.5e-07 Score=77.95 Aligned_cols=79 Identities=18% Similarity=0.224 Sum_probs=57.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|..+|..++||||++..|.-.... ...| |...+.-.+++.+ +.+++||+-|...-.
T Consensus 18 ~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ip--TvGFnvetVtykN-----------------~kfNvwdvGGqd~iR-- 75 (180)
T KOG0071|consen 18 MRILMLGLDAAGKTTILYKLKLGQSV-TTIP--TVGFNVETVTYKN-----------------VKFNVWDVGGQDKIR-- 75 (180)
T ss_pred ceEEEEecccCCceehhhHHhcCCCc-cccc--ccceeEEEEEeee-----------------eEEeeeeccCchhhh--
Confidence 78999999999999999999753221 1222 5556677888888 889999998864322
Q ss_pred ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.-...+.....++|+|+|..+
T Consensus 76 -----plWrhYy~gtqglIFV~Dsa~ 96 (180)
T KOG0071|consen 76 -----PLWRHYYTGTQGLIFVVDSAD 96 (180)
T ss_pred -----HHHHhhccCCceEEEEEeccc
Confidence 223344577899999999854
No 289
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.74 E-value=1.6e-08 Score=95.38 Aligned_cols=58 Identities=33% Similarity=0.483 Sum_probs=47.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
.+++++|.||+|||||+|+|++.. +.+++.||+|..++ .+.+. ..+.++||||+....
T Consensus 119 ~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~------------------~~~~l~DtPG~~~~~ 177 (276)
T TIGR03596 119 IRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQ--WIKLS------------------DGLELLDTPGILWPK 177 (276)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceE--EEEeC------------------CCEEEEECCCcccCC
Confidence 579999999999999999999884 67899999998765 34443 247899999996543
No 290
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.74 E-value=8.7e-08 Score=77.87 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=84.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.|+++||..|+|||||+++|-|.... -...-.++++++ ..+||||..-...
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~l---------ykKTQAve~~d~-------------------~~IDTPGEy~~~~- 52 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTL---------YKKTQAVEFNDK-------------------GDIDTPGEYFEHP- 52 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhh---------hcccceeeccCc-------------------cccCCchhhhhhh-
Confidence 68999999999999999999985321 111224666653 2579999653222
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
.+-...+.....+|++++|-.+.+. ...
T Consensus 53 --~~Y~aL~tt~~dadvi~~v~~and~------------~s~-------------------------------------- 80 (148)
T COG4917 53 --RWYHALITTLQDADVIIYVHAANDP------------ESR-------------------------------------- 80 (148)
T ss_pred --HHHHHHHHHhhccceeeeeecccCc------------ccc--------------------------------------
Confidence 1223445556789999998887431 100
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCC-cEEEeeHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNI-PIIIICAKLE 241 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~-~~i~~sa~~e 241 (363)
+|-+ |.-.-.||+|=++.|.|.. .++-++..++|+.+-|. +++.+|+.-+
T Consensus 81 ------------------f~p~---------f~~~~~k~vIgvVTK~DLa--ed~dI~~~~~~L~eaGa~~IF~~s~~d~ 131 (148)
T COG4917 81 ------------------FPPG---------FLDIGVKKVIGVVTKADLA--EDADISLVKRWLREAGAEPIFETSAVDN 131 (148)
T ss_pred ------------------CCcc---------cccccccceEEEEeccccc--chHhHHHHHHHHHHcCCcceEEEeccCc
Confidence 0100 2223467788899999964 26677888888887764 6888888743
No 291
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=3.4e-08 Score=95.69 Aligned_cols=148 Identities=17% Similarity=0.148 Sum_probs=97.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC----------------CccccCC------CceeecceeEEEEeCCcccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL----------------KISAENY------PFCTIEPNIGIIEVPDKRLKHLNNIVKT 60 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~----------------~~~~~~~------p~~t~~~~~g~v~~~~~~~~~l~~~~~~ 60 (363)
...+||-+|-+|||||-..|+-- ....|++ .|.++..+.=..++.|
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~------------ 80 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD------------ 80 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC------------
Confidence 46899999999999999998611 1112222 2444444444455665
Q ss_pred ccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHH
Q psy2401 61 KKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAIL 140 (363)
Q Consensus 61 ~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~ 140 (363)
..++++||||..++.. ..++.+-.+|.+++|+|+..+.+- -.+.-.+.+
T Consensus 81 -----~~iNLLDTPGHeDFSE-------DTYRtLtAvDsAvMVIDaAKGiE~-------------------qT~KLfeVc 129 (528)
T COG4108 81 -----CLVNLLDTPGHEDFSE-------DTYRTLTAVDSAVMVIDAAKGIEP-------------------QTLKLFEVC 129 (528)
T ss_pred -----eEEeccCCCCccccch-------hHHHHHHhhheeeEEEecccCccH-------------------HHHHHHHHH
Confidence 7899999999887765 777788899999999999765421 112223334
Q ss_pred Hhh----hhhhhcccccCCchhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhh-ccccc
Q psy2401 141 EKY----IDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFL-NLLTI 199 (363)
Q Consensus 141 ~~~----~~~i~k~~~~g~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~-~~l~~ 199 (363)
..| +-++||+++.+. +-.++|++|.+.|.-...+..-|++... .+++. ++.+.
T Consensus 130 rlR~iPI~TFiNKlDR~~r----dP~ELLdEiE~~L~i~~~PitWPIG~gk--~F~Gvy~l~~~ 187 (528)
T COG4108 130 RLRDIPIFTFINKLDREGR----DPLELLDEIEEELGIQCAPITWPIGMGK--DFKGVYHLYND 187 (528)
T ss_pred hhcCCceEEEeeccccccC----ChHHHHHHHHHHhCcceecccccccCCc--ccceeeeeccC
Confidence 333 368999965443 4678899999988876666555666544 46665 44333
No 292
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.72 E-value=1.6e-08 Score=107.29 Aligned_cols=85 Identities=19% Similarity=0.163 Sum_probs=56.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc----------ccCC------CceeecceeEEEE--eCCcccccccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS----------AENY------PFCTIEPNIGIIE--VPDKRLKHLNNIVKTKKIF 64 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~----------~~~~------p~~t~~~~~g~v~--~~~~~~~~l~~~~~~~~~~ 64 (363)
.+|+++|+.++|||||+++|+..... ..++ .+.|+........ +.+.
T Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~--------------- 84 (720)
T TIGR00490 20 RNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGN--------------- 84 (720)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCC---------------
Confidence 58999999999999999999742100 0111 2334433322211 1111
Q ss_pred ceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccC
Q psy2401 65 PAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKD 109 (363)
Q Consensus 65 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~ 109 (363)
..+++++||||+.++. ......++.+|++++|+|+..+
T Consensus 85 ~~~i~liDTPG~~~f~-------~~~~~al~~aD~~llVvda~~g 122 (720)
T TIGR00490 85 EYLINLIDTPGHVDFG-------GDVTRAMRAVDGAIVVVCAVEG 122 (720)
T ss_pred ceEEEEEeCCCccccH-------HHHHHHHHhcCEEEEEEecCCC
Confidence 1689999999987643 3566788999999999998543
No 293
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.72 E-value=1.9e-08 Score=85.04 Aligned_cols=54 Identities=44% Similarity=0.560 Sum_probs=43.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeeccc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLV 77 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~ 77 (363)
+++++|.||+|||||+|+|++.. ..+++.|++|.+... +.++ ..+.++||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~--~~~~------------------~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQT--IFLT------------------PTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEE--EEeC------------------CCEEEEECCCcC
Confidence 68999999999999999999884 468888888876543 3332 247899999985
No 294
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.71 E-value=4e-07 Score=83.39 Aligned_cols=86 Identities=13% Similarity=0.042 Sum_probs=57.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHcC-CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKL-KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~-~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
||.|+|+.+|||||+.+.+... .+.-..+-+.|.++....+...+. ..+++||.||.......
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~----------------~~l~iwD~pGq~~~~~~ 64 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSF----------------LPLNIWDCPGQDDFMEN 64 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTS----------------CEEEEEEE-SSCSTTHT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCC----------------cEEEEEEcCCccccccc
Confidence 7899999999999999999975 333344556688887777776652 68999999998755432
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. +..+--...++++++|+|+|+.
T Consensus 65 ~--~~~~~~~if~~v~~LIyV~D~q 87 (232)
T PF04670_consen 65 Y--FNSQREEIFSNVGVLIYVFDAQ 87 (232)
T ss_dssp T--HTCCHHHHHCTESEEEEEEETT
T ss_pred c--ccccHHHHHhccCEEEEEEEcc
Confidence 1 1112223458899999999994
No 295
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=98.70 E-value=2.7e-08 Score=71.54 Aligned_cols=59 Identities=20% Similarity=0.311 Sum_probs=48.1
Q ss_pred EEEEeCCCCceEEEeecCCCCHHHhhhhhhcchhcccEEEEEecccccccccChhhHhhcCceeecCCCeeeeCCCEEEE
Q psy2401 280 RTYFTVGKKEIRAWTIPNGTTAEQAAGIIHTDIKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDGDILNF 359 (363)
Q Consensus 280 i~~ft~g~~e~raw~~~~g~ta~~~A~~IHsD~~~gfi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdii~~ 359 (363)
|.+||. ....+. +++|+|+.|+|..||+++++.|+.|.|.+ . +.+.+|+++|||+|+|
T Consensus 1 I~v~lp-dG~~~~--~~~g~T~~d~A~~I~~~l~~~~~~A~Vng------------------~-~vdl~~~L~~~d~v~i 58 (60)
T PF02824_consen 1 IRVYLP-DGSIKE--LPEGSTVLDVAYSIHSSLAKRAVAAKVNG------------------Q-LVDLDHPLEDGDVVEI 58 (60)
T ss_dssp EEEEET-TSCEEE--EETTBBHHHHHHHHSHHHHHCEEEEEETT------------------E-EEETTSBB-SSEEEEE
T ss_pred CEEECC-CCCeee--CCCCCCHHHHHHHHCHHHHhheeEEEEcC------------------E-ECCCCCCcCCCCEEEE
Confidence 578883 333444 99999999999999999999999999763 3 3489999999999998
Q ss_pred E
Q psy2401 360 L 360 (363)
Q Consensus 360 ~ 360 (363)
.
T Consensus 59 i 59 (60)
T PF02824_consen 59 I 59 (60)
T ss_dssp E
T ss_pred E
Confidence 4
No 296
>KOG1424|consensus
Probab=98.68 E-value=1.3e-08 Score=100.22 Aligned_cols=59 Identities=34% Similarity=0.417 Sum_probs=50.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC-CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL-KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~-~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
+.||+||.|||||||++|+|.|+ .+.|+..||.|.+.+.-.+. ..+.+.|+||++.+..
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls--------------------~~v~LCDCPGLVfPSf 374 (562)
T KOG1424|consen 315 VTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS--------------------PSVCLCDCPGLVFPSF 374 (562)
T ss_pred eEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC--------------------CCceecCCCCccccCC
Confidence 67999999999999999999999 68899999999988744433 3578999999986544
No 297
>KOG0081|consensus
Probab=98.67 E-value=4.3e-08 Score=82.64 Aligned_cols=160 Identities=14% Similarity=0.053 Sum_probs=88.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKG 83 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 83 (363)
|...+|.+|+||||++-..|..+....=.....++.....+.++....+. .-+.....+++|||+|..++.+
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g------~gr~~rihLQlWDTAGQERFRS-- 82 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGG------GGRGQRIHLQLWDTAGQERFRS-- 82 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCC------CCcceEEEEeeeccccHHHHHH--
Confidence 45567999999999988887643321111111122222222222110000 0011226799999999876654
Q ss_pred cchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHHH
Q psy2401 84 EGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELLK 163 (363)
Q Consensus 84 ~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~~ 163 (363)
...+-.|.|-..++++|.... .
T Consensus 83 -----LTTAFfRDAMGFlLiFDlT~e-----------------------------------------------------q 104 (219)
T KOG0081|consen 83 -----LTTAFFRDAMGFLLIFDLTSE-----------------------------------------------------Q 104 (219)
T ss_pred -----HHHHHHHhhccceEEEeccch-----------------------------------------------------H
Confidence 333444888889999998431 1
Q ss_pred HHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHHH
Q psy2401 164 LLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEEE 243 (363)
Q Consensus 164 ~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~~ 243 (363)
.+-.++.||.+- ....|- ...-+++.+||+|++.......+...+++.++++|++.+||-...+
T Consensus 105 SFLnvrnWlSQL--------------~~hAYc--E~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~N 168 (219)
T KOG0081|consen 105 SFLNVRNWLSQL--------------QTHAYC--ENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTN 168 (219)
T ss_pred HHHHHHHHHHHH--------------HHhhcc--CCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcC
Confidence 111222333221 011121 2334556789999753222345566778888999999999987665
Q ss_pred Hh
Q psy2401 244 IS 245 (363)
Q Consensus 244 i~ 245 (363)
+.
T Consensus 169 v~ 170 (219)
T KOG0081|consen 169 VE 170 (219)
T ss_pred HH
Confidence 54
No 298
>KOG0076|consensus
Probab=98.66 E-value=4.3e-08 Score=83.96 Aligned_cols=82 Identities=29% Similarity=0.227 Sum_probs=57.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC---ccccC--CCceeecceeEEEEeCCccccccccccccccccceeEEEEeeeccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK---ISAEN--YPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLV 77 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~---~~~~~--~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~ 77 (363)
+.+.|+|+-||||||++.++-... ....+ .-.+|...+.|++.+.+ ..+.+||.-|..
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~-----------------~~l~fwdlgGQe 80 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCN-----------------APLSFWDLGGQE 80 (197)
T ss_pred hhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeecc-----------------ceeEEEEcCChH
Confidence 468899999999999999885321 11111 11347778889999987 779999998864
Q ss_pred CCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 78 SGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 78 ~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.-.+.+ -.+...|+++++|+|+.+
T Consensus 81 ~lrSlw-------~~yY~~~H~ii~viDa~~ 104 (197)
T KOG0076|consen 81 SLRSLW-------KKYYWLAHGIIYVIDATD 104 (197)
T ss_pred HHHHHH-------HHHHHHhceeEEeecCCC
Confidence 333322 234467999999999953
No 299
>PTZ00099 rab6; Provisional
Probab=98.66 E-value=1.9e-07 Score=82.17 Aligned_cols=35 Identities=26% Similarity=0.132 Sum_probs=26.7
Q ss_pred eeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecc
Q psy2401 66 AIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 66 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.++.+|||||...+... .. ..++.||++|+|+|++
T Consensus 29 v~l~iwDt~G~e~~~~~----~~---~~~~~ad~~ilv~D~t 63 (176)
T PTZ00099 29 VRLQLWDTAGQERFRSL----IP---SYIRDSAAAIVVYDIT 63 (176)
T ss_pred EEEEEEECCChHHhhhc----cH---HHhCCCcEEEEEEECC
Confidence 78999999997654432 12 3458999999999985
No 300
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.65 E-value=2.3e-07 Score=90.61 Aligned_cols=84 Identities=18% Similarity=0.141 Sum_probs=63.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc------cc----------CCCceeecceeEEEEeCCccccccccccccccccce
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS------AE----------NYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPA 66 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~------~~----------~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~ 66 (363)
.+||||-+---|||||...|+.+... ++ .-.+.|+-.....+.|++ .
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~-----------------~ 68 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNG-----------------T 68 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCC-----------------e
Confidence 57999999999999999999865211 11 113666666566677877 7
Q ss_pred eEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCC
Q psy2401 67 IIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDD 110 (363)
Q Consensus 67 ~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~ 110 (363)
.|+++||||..++... .-..+.=+|.++++|||++++
T Consensus 69 ~INIvDTPGHADFGGE-------VERvl~MVDgvlLlVDA~EGp 105 (603)
T COG1217 69 RINIVDTPGHADFGGE-------VERVLSMVDGVLLLVDASEGP 105 (603)
T ss_pred EEEEecCCCcCCccch-------hhhhhhhcceEEEEEEcccCC
Confidence 8999999999887764 334456689999999998754
No 301
>KOG0090|consensus
Probab=98.63 E-value=1.1e-07 Score=84.19 Aligned_cols=78 Identities=26% Similarity=0.377 Sum_probs=58.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
..|-++|+.+||||+||-.|.-... .-..+++.|+.+...+++ ....+||.||..+
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~---~~TvtSiepn~a~~r~gs-----------------~~~~LVD~PGH~r---- 94 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSH---RGTVTSIEPNEATYRLGS-----------------ENVTLVDLPGHSR---- 94 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCc---cCeeeeeccceeeEeecC-----------------cceEEEeCCCcHH----
Confidence 4688999999999999998875311 112457889999999887 4579999999754
Q ss_pred ccchhhHHHhhc---cccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHI---RETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~---~~aD~il~Vvda~ 107 (363)
+..++...+ +.+-+|++|||+.
T Consensus 95 ---lR~kl~e~~~~~~~akaiVFVVDSa 119 (238)
T KOG0090|consen 95 ---LRRKLLEYLKHNYSAKAIVFVVDSA 119 (238)
T ss_pred ---HHHHHHHHccccccceeEEEEEecc
Confidence 223443333 5899999999984
No 302
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.62 E-value=1.4e-07 Score=91.72 Aligned_cols=83 Identities=23% Similarity=0.249 Sum_probs=47.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCcc---ccC--CCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKIS---AEN--YPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGL 76 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~---~~~--~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl 76 (363)
+++||++|.+|+|||||+|+|-|-... .++ ..-||..+.... .+.. ..+.+||+||+
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~--~p~~----------------pnv~lWDlPG~ 96 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYP--HPKF----------------PNVTLWDLPGI 96 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE---SS-----------------TTEEEEEE--G
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCC--CCCC----------------CCCeEEeCCCC
Confidence 368999999999999999999763111 111 123455554333 2321 35899999998
Q ss_pred cCCCCcccchhhHHHhh--ccccCEEEEEEec
Q psy2401 77 VSGASKGEGLGNKFLAH--IRETNIVIHVIRC 106 (363)
Q Consensus 77 ~~~~~~~~~l~~~~l~~--~~~aD~il~Vvda 106 (363)
....... +.++.. +...|.+|+|.+-
T Consensus 97 gt~~f~~----~~Yl~~~~~~~yD~fiii~s~ 124 (376)
T PF05049_consen 97 GTPNFPP----EEYLKEVKFYRYDFFIIISSE 124 (376)
T ss_dssp GGSS--H----HHHHHHTTGGG-SEEEEEESS
T ss_pred CCCCCCH----HHHHHHccccccCEEEEEeCC
Confidence 6533322 355543 5678988887764
No 303
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.61 E-value=7.8e-08 Score=84.04 Aligned_cols=54 Identities=35% Similarity=0.439 Sum_probs=44.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGL 76 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl 76 (363)
.+++++|.+|+|||||+|+|++.. ..+++.|++|....... ++ ..+.++||||+
T Consensus 116 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~--~~------------------~~~~~iDtpG~ 170 (171)
T cd01856 116 IRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIK--IS------------------PGIYLLDTPGI 170 (171)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEE--ec------------------CCEEEEECCCC
Confidence 589999999999999999999874 46788999997765433 22 24789999997
No 304
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.59 E-value=6.4e-08 Score=94.65 Aligned_cols=57 Identities=28% Similarity=0.381 Sum_probs=45.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC------ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK------ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGL 76 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~------~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl 76 (363)
.++.++|.+|||||||+|+|++.. +.++++|++|..+... .++ ..+.++||||+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~--~~~------------------~~~~l~DtPG~ 214 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEI--PLD------------------DGHSLYDTPGI 214 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEE--EeC------------------CCCEEEECCCC
Confidence 479999999999999999999752 4688999999886643 332 23679999999
Q ss_pred cCC
Q psy2401 77 VSG 79 (363)
Q Consensus 77 ~~~ 79 (363)
...
T Consensus 215 ~~~ 217 (360)
T TIGR03597 215 INS 217 (360)
T ss_pred CCh
Confidence 754
No 305
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.59 E-value=6.3e-08 Score=103.01 Aligned_cols=113 Identities=22% Similarity=0.115 Sum_probs=72.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccc----------cCC------CceeecceeEEEEe--CCcccccccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISA----------ENY------PFCTIEPNIGIIEV--PDKRLKHLNNIVKTKKIF 64 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~----------~~~------p~~t~~~~~g~v~~--~~~~~~~l~~~~~~~~~~ 64 (363)
++|+++|+.++|||||..+|......+ .++ .+.|++.....+.| .+.
T Consensus 21 Rni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~--------------- 85 (731)
T PRK07560 21 RNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGK--------------- 85 (731)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCC---------------
Confidence 579999999999999999997431111 111 13344444333333 211
Q ss_pred ceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHh-h
Q psy2401 65 PAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEK-Y 143 (363)
Q Consensus 65 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~-~ 143 (363)
...++++||||+.++. ......++.+|++++|||+.++.. .+++..|..+..... +
T Consensus 86 ~~~i~liDtPG~~df~-------~~~~~~l~~~D~avlVvda~~g~~----------------~~t~~~~~~~~~~~~~~ 142 (731)
T PRK07560 86 EYLINLIDTPGHVDFG-------GDVTRAMRAVDGAIVVVDAVEGVM----------------PQTETVLRQALRERVKP 142 (731)
T ss_pred cEEEEEEcCCCccChH-------HHHHHHHHhcCEEEEEEECCCCCC----------------ccHHHHHHHHHHcCCCe
Confidence 2679999999987743 366778899999999999865421 123444444333333 5
Q ss_pred hhhhhccccc
Q psy2401 144 IDKENKKFFL 153 (363)
Q Consensus 144 ~~~i~k~~~~ 153 (363)
+..+||+++.
T Consensus 143 iv~iNK~D~~ 152 (731)
T PRK07560 143 VLFINKVDRL 152 (731)
T ss_pred EEEEECchhh
Confidence 6789999654
No 306
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=3.9e-07 Score=85.35 Aligned_cols=163 Identities=23% Similarity=0.229 Sum_probs=98.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCc---cccCCCceeecceeEEEEe---CCc------cccccccccccccccceeEEE
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKI---SAENYPFCTIEPNIGIIEV---PDK------RLKHLNNIVKTKKIFPAIIKL 70 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~---~~~~~p~~t~~~~~g~v~~---~~~------~~~~l~~~~~~~~~~~~~i~l 70 (363)
.+||.+|+-.-|||||..+|+|-.. ...-..+.|+..-.+...+ ++. .....++.|......-..+.|
T Consensus 11 vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VSf 90 (415)
T COG5257 11 VNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVSF 90 (415)
T ss_pred eEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEEE
Confidence 6899999999999999999998521 1112233343322221111 110 001122233333344467899
Q ss_pred EeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcc
Q psy2401 71 VDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKK 150 (363)
Q Consensus 71 vDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~ 150 (363)
+|.||. +-+...+++-..-.|++++|+.|.+. .
T Consensus 91 VDaPGH-------e~LMATMLsGAAlMDgAlLvIaANEp------------c---------------------------- 123 (415)
T COG5257 91 VDAPGH-------ETLMATMLSGAALMDGALLVIAANEP------------C---------------------------- 123 (415)
T ss_pred eeCCch-------HHHHHHHhcchhhhcceEEEEecCCC------------C----------------------------
Confidence 999995 23555667777778999999999531 1
Q ss_pred cccCCchhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCC--CchHHHHHHHHHHhc
Q psy2401 151 FFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGF--KNNLLLDQLKIYAHN 228 (363)
Q Consensus 151 ~~~g~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~--~~~~~~~~i~~~~~~ 228 (363)
+.|-+.|. |-.+..+--|-++++-||.|+.- ..-+..++++++++-
T Consensus 124 -----------------------------PQPQT~EH---l~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkG 171 (415)
T COG5257 124 -----------------------------PQPQTREH---LMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFVKG 171 (415)
T ss_pred -----------------------------CCCchHHH---HHHHhhhccceEEEEecccceecHHHHHHHHHHHHHHhcc
Confidence 11223332 22244456788999999999632 122456677777653
Q ss_pred C---CCcEEEeeHHHHHHH
Q psy2401 229 Q---NIPIIIICAKLEEEI 244 (363)
Q Consensus 229 ~---~~~~i~~sa~~e~~i 244 (363)
. +.|+||+||....+|
T Consensus 172 t~Ae~aPIIPiSA~~~~NI 190 (415)
T COG5257 172 TVAENAPIIPISAQHKANI 190 (415)
T ss_pred cccCCCceeeehhhhccCH
Confidence 3 679999999865443
No 307
>PRK13796 GTPase YqeH; Provisional
Probab=98.51 E-value=1.2e-07 Score=92.84 Aligned_cols=56 Identities=32% Similarity=0.437 Sum_probs=43.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC------CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL------KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGL 76 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~------~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl 76 (363)
.++.+||.||||||||+|+|.+. .+.+++.|+||.+... +.+++ ...++||||+
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~--~~l~~------------------~~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIE--IPLDD------------------GSFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEE--EEcCC------------------CcEEEECCCc
Confidence 46899999999999999999853 2347899999987653 33433 2479999999
Q ss_pred cC
Q psy2401 77 VS 78 (363)
Q Consensus 77 ~~ 78 (363)
..
T Consensus 221 ~~ 222 (365)
T PRK13796 221 IH 222 (365)
T ss_pred cc
Confidence 74
No 308
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=98.46 E-value=4.8e-07 Score=72.49 Aligned_cols=76 Identities=22% Similarity=0.323 Sum_probs=51.3
Q ss_pred eccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHHHHh---------------------c--CCHHH------HHH-
Q psy2401 205 VANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEEEIS---------------------D--LNNID------KKF- 254 (363)
Q Consensus 205 v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~~i~---------------------e--l~~~~------~~~- 254 (363)
++||+|.+ .+.++++++++.+ .+..++|+||..|..|. + +++.+ .++
T Consensus 1 AaNK~D~~-~a~~ni~kl~~~~--~~~~vVp~SA~aEl~Lr~a~k~g~I~Y~pGd~~F~i~~~~~l~~~q~~~Le~I~~~ 77 (109)
T PF08438_consen 1 AANKADLP-AADENIEKLKEKY--PDEPVVPTSAAAELALRKAAKAGLIDYIPGDSDFEITDDDKLSDKQKKALEKIRDN 77 (109)
T ss_dssp EEE-GGG--S-HHHHHHHHHHH--TT-EEEEE-HHHHHHHHS-SSS----S----------------------TTHHHHH
T ss_pred CCcccccc-ccHhHHHHHHHhC--CCCceeeccHHHHHHHHHHHHCCCEEeCCCCCceEeecccccCHHHHHHHHHHHHH
Confidence 58999975 3678888888754 34679999999999855 1 33322 234
Q ss_pred HHhhcCCCchhHHHHHH-HHHHhCCCEEEEeC
Q psy2401 255 FLDNLGLKETKLNDLIR-ASFSLLDLRTYFTV 285 (363)
Q Consensus 255 ~l~~~~l~~~~l~~l~~-~~~~~l~li~~ft~ 285 (363)
+|..+| .+|++++|+ ++|++|++|+|||+
T Consensus 78 vl~~~g--~TGVq~aln~AVf~ll~~i~VyPV 107 (109)
T PF08438_consen 78 VLERYG--STGVQEALNRAVFDLLGMIVVYPV 107 (109)
T ss_dssp HTSSSS--S-SHHHHHHHHHHTTS-EEEEEEE
T ss_pred HHHhcC--CchHHHHHHHHHHHhcCCeeEecc
Confidence 788887 589999999 56699999999998
No 309
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.44 E-value=3.3e-06 Score=79.75 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKI 27 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~ 27 (363)
++|-++|.+|+|||||+|.|.+...
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~ 29 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDI 29 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS-
T ss_pred EEEEEECCCCCCHHHHHHHHHhccc
Confidence 6899999999999999999998743
No 310
>KOG0458|consensus
Probab=98.43 E-value=1.2e-06 Score=87.90 Aligned_cols=37 Identities=14% Similarity=0.298 Sum_probs=30.2
Q ss_pred eeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccC
Q psy2401 66 AIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKD 109 (363)
Q Consensus 66 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~ 109 (363)
..++++|.||.-++.. .+++.+..||+.++||||+.+
T Consensus 255 ~~~tliDaPGhkdFi~-------nmi~g~sqaD~avLvvd~s~~ 291 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIP-------NMISGASQADVAVLVVDASTG 291 (603)
T ss_pred eeEEEecCCCccccch-------hhhccccccceEEEEEECCcc
Confidence 6789999999766554 666777899999999999753
No 311
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.43 E-value=2.7e-07 Score=85.38 Aligned_cols=68 Identities=22% Similarity=0.288 Sum_probs=54.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcccccccc--------ccccccccceeEEEEeee
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNN--------IVKTKKIFPAIIKLVDIA 74 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~--------~~~~~~~~~~~i~lvDtp 74 (363)
.-++|+||||||||||+++|+| ...|..|.+.++|..+..++. +..|....+..+.+.|..
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g-----------~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V 97 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAG-----------LLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELV 97 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhc-----------cCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehH
Confidence 3479999999999999999999 788999999999987665443 445555677788888888
Q ss_pred cccCCCC
Q psy2401 75 GLVSGAS 81 (363)
Q Consensus 75 Gl~~~~~ 81 (363)
-+.+..+
T Consensus 98 ~~GR~p~ 104 (258)
T COG1120 98 LLGRYPH 104 (258)
T ss_pred hhcCCcc
Confidence 7776554
No 312
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.39 E-value=7.6e-07 Score=81.38 Aligned_cols=89 Identities=15% Similarity=0.006 Sum_probs=56.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHcC--CccccC-CCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKL--KISAEN-YPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~--~~~~~~-~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
-|+++|++++|||||+|.|++. ...+++ .+.||.....+..++... ....+.++||||+.+..
T Consensus 9 vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~--------------~~~~v~~lDteG~~~~~ 74 (224)
T cd01851 9 VVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLG--------------KEHAVLLLDTEGTDGRE 74 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCC--------------CcceEEEEecCCcCccc
Confidence 4899999999999999999998 555443 355565444333333210 01579999999987543
Q ss_pred CcccchhhHHHhhcc--ccCEEEEEEecc
Q psy2401 81 SKGEGLGNKFLAHIR--ETNIVIHVIRCF 107 (363)
Q Consensus 81 ~~~~~l~~~~l~~~~--~aD~il~Vvda~ 107 (363)
... ......+..+. -+|++|+.++..
T Consensus 75 ~~~-~~~~~~~~~l~~llss~~i~n~~~~ 102 (224)
T cd01851 75 RGE-FEDDARLFALATLLSSVLIYNSWET 102 (224)
T ss_pred cCc-hhhhhHHHHHHHHHhCEEEEeccCc
Confidence 321 01112223333 389999988873
No 313
>KOG1673|consensus
Probab=98.39 E-value=1.1e-06 Score=74.09 Aligned_cols=145 Identities=14% Similarity=0.152 Sum_probs=90.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
++||+++|.+..|||||+-...+.....+......+.....++.+.+.+ ..+.+||+-|..++..
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~---------------IsfSIwdlgG~~~~~n 84 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTD---------------ISFSIWDLGGQREFIN 84 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceE---------------EEEEEEecCCcHhhhc
Confidence 3799999999999999998887753321111111223334456666654 6788999988643322
Q ss_pred cccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHH
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIEL 161 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~ 161 (363)
..--.+..+-+|++++|.+.
T Consensus 85 -------~lPiac~dsvaIlFmFDLt~----------------------------------------------------- 104 (205)
T KOG1673|consen 85 -------MLPIACKDSVAILFMFDLTR----------------------------------------------------- 104 (205)
T ss_pred -------cCceeecCcEEEEEEEecCc-----------------------------------------------------
Confidence 23344567778999999842
Q ss_pred HHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCC-CchHHHHHHH----HHHhcCCCcEEEe
Q psy2401 162 LKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGF-KNNLLLDQLK----IYAHNQNIPIIII 236 (363)
Q Consensus 162 ~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~-~~~~~~~~i~----~~~~~~~~~~i~~ 236 (363)
.++|+.+++|+.+.+-. ..++.|++ ++.|.|.-. -|.++.+.+. .+++-.+.+.+.+
T Consensus 105 r~TLnSi~~WY~QAr~~-----------------NktAiPil-vGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~ 166 (205)
T KOG1673|consen 105 RSTLNSIKEWYRQARGL-----------------NKTAIPIL-VGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFC 166 (205)
T ss_pred hHHHHHHHHHHHHHhcc-----------------CCccceEE-eccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEe
Confidence 25778888888754222 22677775 678888521 1344444433 4444446777888
Q ss_pred eHH
Q psy2401 237 CAK 239 (363)
Q Consensus 237 sa~ 239 (363)
|+.
T Consensus 167 Sts 169 (205)
T KOG1673|consen 167 STS 169 (205)
T ss_pred ecc
Confidence 876
No 314
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.38 E-value=5.7e-07 Score=77.13 Aligned_cols=54 Identities=35% Similarity=0.537 Sum_probs=40.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC-CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL-KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGL 76 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~-~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl 76 (363)
.++.++|.||+|||||+|+|.+. ...+++.+++|.+.. .+.. + ..+.+|||||+
T Consensus 102 ~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~--~~~~-~-----------------~~~~~~DtpGi 156 (156)
T cd01859 102 GKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQ--LVKI-T-----------------SKIYLLDTPGV 156 (156)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeE--EEEc-C-----------------CCEEEEECcCC
Confidence 58999999999999999999986 355677787765432 2222 2 35889999995
No 315
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.37 E-value=2e-06 Score=82.80 Aligned_cols=22 Identities=50% Similarity=0.856 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..|+|.|+||||||||++.|..
T Consensus 57 ~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 57 LRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998854
No 316
>KOG0077|consensus
Probab=98.36 E-value=1.2e-06 Score=74.66 Aligned_cols=78 Identities=18% Similarity=0.382 Sum_probs=58.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
-|+.+.|.-|+|||||++.|-....- ...| |.+|++-.+.+.+ .+++.+|.-|.....
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDrl~-qhvP--TlHPTSE~l~Ig~-----------------m~ftt~DLGGH~qAr-- 78 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDRLG-QHVP--TLHPTSEELSIGG-----------------MTFTTFDLGGHLQAR-- 78 (193)
T ss_pred ceEEEEeecCCchhhHHHHHcccccc-ccCC--CcCCChHHheecC-----------------ceEEEEccccHHHHH--
Confidence 47899999999999999999764221 1223 8889988888888 778999998854221
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+-....+-.+|++++.|||.
T Consensus 79 -----r~wkdyf~~v~~iv~lvda~ 98 (193)
T KOG0077|consen 79 -----RVWKDYFPQVDAIVYLVDAY 98 (193)
T ss_pred -----HHHHHHHhhhceeEeeeehh
Confidence 12335567899999999994
No 317
>KOG1707|consensus
Probab=98.35 E-value=1.2e-06 Score=87.84 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=49.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcccc---CCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAE---NYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSG 79 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~---~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
.||+++|..|+|||||+-+|+......+ -.|-.|+-+ .+ .|.. .+..++|+..-...
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPa-----dv------------tPe~---vpt~ivD~ss~~~~ 69 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPA-----DV------------TPEN---VPTSIVDTSSDSDD 69 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCC-----cc------------CcCc---CceEEEecccccch
Confidence 6899999999999999999998532211 111112111 11 1111 45789999732111
Q ss_pred CCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 80 ASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 80 ~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.......++.||++++|..+.+
T Consensus 70 -------~~~l~~EirkA~vi~lvyavd~ 91 (625)
T KOG1707|consen 70 -------RLCLRKEIRKADVICLVYAVDD 91 (625)
T ss_pred -------hHHHHHHHhhcCEEEEEEecCC
Confidence 1245678899999999998743
No 318
>KOG0461|consensus
Probab=98.33 E-value=3.3e-06 Score=79.80 Aligned_cols=91 Identities=24% Similarity=0.299 Sum_probs=58.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC--Ccc-----ccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeec
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL--KIS-----AENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAG 75 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~--~~~-----~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpG 75 (363)
+++|++|+-.||||||.++|+.- .+. .+...+.|.+.....+.++.+. .| |.. -+-++.++|+||
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~pa--rL-----pq~-e~lq~tlvDCPG 79 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPA--RL-----PQG-EQLQFTLVDCPG 79 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeeccccc--cc-----Ccc-ccceeEEEeCCC
Confidence 68999999999999999999743 222 2222344544444444333211 11 110 115689999999
Q ss_pred ccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 76 LVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 76 l~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.. ++.+..+....-.|..++|+|+..
T Consensus 80 Ha-------sLIRtiiggaqiiDlm~lviDv~k 105 (522)
T KOG0461|consen 80 HA-------SLIRTIIGGAQIIDLMILVIDVQK 105 (522)
T ss_pred cH-------HHHHHHHhhhheeeeeeEEEehhc
Confidence 63 355566666677899999999853
No 319
>PRK12288 GTPase RsgA; Reviewed
Probab=98.33 E-value=6e-07 Score=87.20 Aligned_cols=57 Identities=26% Similarity=0.279 Sum_probs=38.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHcC-CccccCCCc-------eeecceeEEEEeCCccccccccccccccccceeEEEEeeec
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKL-KISAENYPF-------CTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAG 75 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~-~~~~~~~p~-------~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpG 75 (363)
.++|+|.||||||||+|+|.+. ...++..+. ||.... .+.+++ ...++||||
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~--l~~l~~------------------~~~liDTPG 266 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAAR--LYHFPH------------------GGDLIDSPG 266 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEE--EEEecC------------------CCEEEECCC
Confidence 4789999999999999999987 455555543 343322 223322 235999999
Q ss_pred ccCCC
Q psy2401 76 LVSGA 80 (363)
Q Consensus 76 l~~~~ 80 (363)
+....
T Consensus 267 ir~~~ 271 (347)
T PRK12288 267 VREFG 271 (347)
T ss_pred CCccc
Confidence 97643
No 320
>PRK12289 GTPase RsgA; Reviewed
Probab=98.32 E-value=5.4e-07 Score=87.56 Aligned_cols=58 Identities=24% Similarity=0.233 Sum_probs=41.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHcC-CccccCCCc-------eeecceeEEEEeCCccccccccccccccccceeEEEEeeec
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKL-KISAENYPF-------CTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAG 75 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~-~~~~~~~p~-------~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpG 75 (363)
.++|+|+||||||||+|+|.+. ...+++.++ ||.+.. .+.+++ ...++||||
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~--l~~l~~------------------g~~liDTPG 233 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVE--LFELPN------------------GGLLADTPG 233 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeE--EEECCC------------------CcEEEeCCC
Confidence 4799999999999999999976 466666666 554442 233322 136999999
Q ss_pred ccCCCC
Q psy2401 76 LVSGAS 81 (363)
Q Consensus 76 l~~~~~ 81 (363)
+....-
T Consensus 234 ~~~~~l 239 (352)
T PRK12289 234 FNQPDL 239 (352)
T ss_pred cccccc
Confidence 965443
No 321
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.29 E-value=6.6e-06 Score=89.57 Aligned_cols=82 Identities=12% Similarity=0.054 Sum_probs=54.4
Q ss_pred cHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcccccccccccc-------ccccceeEEEEeeecccCCCCcccch
Q psy2401 14 GKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKT-------KKIFPAIIKLVDIAGLVSGASKGEGL 86 (363)
Q Consensus 14 GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~-------~~~~~~~i~lvDtpGl~~~~~~~~~l 86 (363)
+||||+.+|.+..+.....-+.|.+.....++++.. .+.+.+ .-.+ ..+.+|||||...+..
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~-----~~~~~~~~~~~~~~~~~-p~i~fiDTPGhe~F~~----- 541 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVI-----KKICGPLLKLLKAEIKI-PGLLFIDTPGHEAFTS----- 541 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEeccc-----ccccccccccccccCCc-CcEEEEECCCcHHHHH-----
Confidence 599999999998776666678888877666776531 111111 1111 3589999999654322
Q ss_pred hhHHHhhccccCEEEEEEeccc
Q psy2401 87 GNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 87 ~~~~l~~~~~aD~il~Vvda~~ 108 (363)
......+.+|++++|+|+.+
T Consensus 542 --lr~~g~~~aDivlLVVDa~~ 561 (1049)
T PRK14845 542 --LRKRGGSLADLAVLVVDINE 561 (1049)
T ss_pred --HHHhhcccCCEEEEEEECcc
Confidence 12234577999999999853
No 322
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.29 E-value=1.9e-06 Score=82.20 Aligned_cols=22 Identities=45% Similarity=0.732 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..|+++|+||||||||++.|..
T Consensus 35 ~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 35 HRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999875
No 323
>KOG4252|consensus
Probab=98.24 E-value=3.8e-07 Score=78.47 Aligned_cols=83 Identities=19% Similarity=0.088 Sum_probs=52.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+|+.|+|..++||||++...+...+.-......-.+.....+.+.++. ..+.+|||+|..++..
T Consensus 21 iK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Ed---------------vr~mlWdtagqeEfDa- 84 (246)
T KOG4252|consen 21 IKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIED---------------VRSMLWDTAGQEEFDA- 84 (246)
T ss_pred EEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHH---------------HHHHHHHhccchhHHH-
Confidence 689999999999999999999632221111111122222233443332 4577999999754322
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
-..++.|.|.+-++|+.-.
T Consensus 85 ------ItkAyyrgaqa~vLVFSTT 103 (246)
T KOG4252|consen 85 ------ITKAYYRGAQASVLVFSTT 103 (246)
T ss_pred ------HHHHHhccccceEEEEecc
Confidence 3346679999999998763
No 324
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.24 E-value=9.1e-07 Score=76.32 Aligned_cols=23 Identities=43% Similarity=0.505 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
..++++|++|||||||+|+|.+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 56899999999999999999986
No 325
>KOG3883|consensus
Probab=98.23 E-value=3e-05 Score=65.32 Aligned_cols=85 Identities=18% Similarity=0.219 Sum_probs=54.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC-CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL-KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~-~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.|+.++|.-++|||.++..|.-. ...-..+.-|.-+...+.+.-+.. ...++.+.||+|+..+..
T Consensus 10 ~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rg--------------arE~l~lyDTaGlq~~~~ 75 (198)
T KOG3883|consen 10 CKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRG--------------AREQLRLYDTAGLQGGQQ 75 (198)
T ss_pred eEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCC--------------hhheEEEeecccccCchh
Confidence 68999999999999999998743 222222222223333444443331 116789999999976632
Q ss_pred cccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.+-+ .++..+|+.++|.+..
T Consensus 76 ---eLpr---hy~q~aDafVLVYs~~ 95 (198)
T KOG3883|consen 76 ---ELPR---HYFQFADAFVLVYSPM 95 (198)
T ss_pred ---hhhH---hHhccCceEEEEecCC
Confidence 1222 3447799999999873
No 326
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.23 E-value=1.5e-06 Score=80.52 Aligned_cols=57 Identities=23% Similarity=0.236 Sum_probs=38.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC-CccccCCC-------ceeecceeEEEEeCCccccccccccccccccceeEEEEeee
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL-KISAENYP-------FCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIA 74 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~-~~~~~~~p-------~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtp 74 (363)
..++++|+||||||||+|+|.+. ...+++.+ +||.+... +.+.+ -.++|||
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l--~~l~~-------------------~~liDtP 179 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVEL--FHFHG-------------------GLIADTP 179 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEE--EEcCC-------------------cEEEeCC
Confidence 46899999999999999999986 33333332 35544432 23322 2699999
Q ss_pred cccCCC
Q psy2401 75 GLVSGA 80 (363)
Q Consensus 75 Gl~~~~ 80 (363)
|+....
T Consensus 180 G~~~~~ 185 (245)
T TIGR00157 180 GFNEFG 185 (245)
T ss_pred CccccC
Confidence 997643
No 327
>KOG0074|consensus
Probab=98.21 E-value=5.9e-06 Score=68.66 Aligned_cols=78 Identities=22% Similarity=0.223 Sum_probs=58.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc-ccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS-AENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~-~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.+++++|.-|+||||+++.|.+.... +.+ |...+...+.+++. .++++||+-|.-.
T Consensus 18 irilllGldnAGKTT~LKqL~sED~~hltp----T~GFn~k~v~~~g~----------------f~LnvwDiGGqr~--- 74 (185)
T KOG0074|consen 18 IRILLLGLDNAGKTTFLKQLKSEDPRHLTP----TNGFNTKKVEYDGT----------------FHLNVWDIGGQRG--- 74 (185)
T ss_pred EEEEEEecCCCcchhHHHHHccCChhhccc----cCCcceEEEeecCc----------------EEEEEEecCCccc---
Confidence 68999999999999999999986433 222 44455667777774 7899999988532
Q ss_pred cccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+..-.-++..++|.+++|+|..
T Consensus 75 ----IRpyWsNYyenvd~lIyVIDS~ 96 (185)
T KOG0074|consen 75 ----IRPYWSNYYENVDGLIYVIDST 96 (185)
T ss_pred ----cchhhhhhhhccceEEEEEeCC
Confidence 2223346668899999999953
No 328
>KOG0468|consensus
Probab=98.19 E-value=5.7e-06 Score=83.95 Aligned_cols=89 Identities=21% Similarity=0.299 Sum_probs=62.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc-c-----c--CC---------CceeecceeEEEEeCCccccccccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS-A-----E--NY---------PFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFP 65 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~-~-----~--~~---------p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~ 65 (363)
.++|++|+=.+|||+|+.+|..+... . . .| .+++++.+.-++-..|. +...
T Consensus 129 rnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~------------~~KS 196 (971)
T KOG0468|consen 129 RNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDS------------KGKS 196 (971)
T ss_pred EEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecC------------cCce
Confidence 57999999999999999999875221 1 0 11 24444444444444331 1222
Q ss_pred eeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCC
Q psy2401 66 AIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDD 110 (363)
Q Consensus 66 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~ 110 (363)
.-++++||||...+.. +..+.++.+|++++|+|+.++.
T Consensus 197 ~l~nilDTPGHVnF~D-------E~ta~l~~sDgvVlvvDv~EGV 234 (971)
T KOG0468|consen 197 YLMNILDTPGHVNFSD-------ETTASLRLSDGVVLVVDVAEGV 234 (971)
T ss_pred eeeeeecCCCcccchH-------HHHHHhhhcceEEEEEEcccCc
Confidence 5689999999987654 7778889999999999997653
No 329
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.19 E-value=2.3e-06 Score=75.97 Aligned_cols=23 Identities=52% Similarity=0.569 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
.+++++|.||+|||||+|+|.+.
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~ 150 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKK 150 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHh
Confidence 57999999999999999999974
No 330
>PRK00098 GTPase RsgA; Reviewed
Probab=98.18 E-value=2.2e-06 Score=81.71 Aligned_cols=23 Identities=48% Similarity=0.458 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
..++++|+||||||||+|+|++.
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999986
No 331
>KOG2484|consensus
Probab=98.18 E-value=1.2e-06 Score=84.22 Aligned_cols=61 Identities=33% Similarity=0.550 Sum_probs=48.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCc-cccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKI-SAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~-~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
+.++|+||.||+||||++|+|....+ .+++.||.|...+. ++.+ ..|.|+|.||++...
T Consensus 252 sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqe--V~Ld------------------k~i~llDsPgiv~~~ 311 (435)
T KOG2484|consen 252 SIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQE--VKLD------------------KKIRLLDSPGIVPPS 311 (435)
T ss_pred ceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhh--eecc------------------CCceeccCCceeecC
Confidence 36899999999999999999998854 59999998876553 3332 468999999998755
Q ss_pred Cc
Q psy2401 81 SK 82 (363)
Q Consensus 81 ~~ 82 (363)
..
T Consensus 312 ~~ 313 (435)
T KOG2484|consen 312 ID 313 (435)
T ss_pred CC
Confidence 53
No 332
>KOG1547|consensus
Probab=98.18 E-value=3e-05 Score=70.15 Aligned_cols=65 Identities=29% Similarity=0.363 Sum_probs=43.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc--------ccCCCceeecceeEE-EEeCCccccccccccccccccceeEEEEee
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS--------AENYPFCTIEPNIGI-IEVPDKRLKHLNNIVKTKKIFPAIIKLVDI 73 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~--------~~~~p~~t~~~~~g~-v~~~~~~~~~l~~~~~~~~~~~~~i~lvDt 73 (363)
++|-+||.+|.|||||+|.|..+... ..++|.||.-...++ +.-++.+ -+++++||
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVk---------------lkltviDT 111 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVK---------------LKLTVIDT 111 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceE---------------EEEEEecC
Confidence 67999999999999999999765221 224555543333333 3333332 57899999
Q ss_pred ecccCCCCc
Q psy2401 74 AGLVSGASK 82 (363)
Q Consensus 74 pGl~~~~~~ 82 (363)
||+.+....
T Consensus 112 PGfGDqInN 120 (336)
T KOG1547|consen 112 PGFGDQINN 120 (336)
T ss_pred CCcccccCc
Confidence 999875543
No 333
>KOG0072|consensus
Probab=98.15 E-value=3.3e-06 Score=70.34 Aligned_cols=79 Identities=22% Similarity=0.289 Sum_probs=49.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+++-++|.-|+||||++-.+--.. -+.+.| |+..+...+++.+ -++++||.-|..+-+.
T Consensus 19 ~rililgldGaGkttIlyrlqvge-vvttkP--tigfnve~v~yKN-----------------Lk~~vwdLggqtSirP- 77 (182)
T KOG0072|consen 19 MRILILGLDGAGKTTILYRLQVGE-VVTTKP--TIGFNVETVPYKN-----------------LKFQVWDLGGQTSIRP- 77 (182)
T ss_pred eEEEEeeccCCCeeEEEEEcccCc-ccccCC--CCCcCcccccccc-----------------ccceeeEccCcccccH-
Confidence 567777777777777654442111 122223 3344455566655 5688999988654332
Q ss_pred ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
-...+..+.|++++|||.++
T Consensus 78 ------yWRcYy~dt~avIyVVDssd 97 (182)
T KOG0072|consen 78 ------YWRCYYADTDAVIYVVDSSD 97 (182)
T ss_pred ------HHHHHhcccceEEEEEeccc
Confidence 34466688999999999864
No 334
>KOG0393|consensus
Probab=98.13 E-value=1.4e-05 Score=70.84 Aligned_cols=81 Identities=23% Similarity=0.288 Sum_probs=57.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeC-CccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVP-DKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~-~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
+|+.+||..++|||+|+-..+.......-.|.. .+-....+.++ +++ ..+.+|||+|..+...
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTV-Fdnys~~v~V~dg~~---------------v~L~LwDTAGqedYDr 68 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTV-FDNYSANVTVDDGKP---------------VELGLWDTAGQEDYDR 68 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccCcCcccccCeE-EccceEEEEecCCCE---------------EEEeeeecCCCccccc
Confidence 799999999999999999888754443333432 25555667885 654 7899999999876533
Q ss_pred cccchhhHHHhhccccCEEEEEEec
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRC 106 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda 106 (363)
+. -+ ....+|+++.+++.
T Consensus 69 ----lR--pl-sY~~tdvfl~cfsv 86 (198)
T KOG0393|consen 69 ----LR--PL-SYPQTDVFLLCFSV 86 (198)
T ss_pred ----cc--cc-CCCCCCEEEEEEEc
Confidence 21 12 45788999887775
No 335
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.06 E-value=3e-06 Score=75.49 Aligned_cols=64 Identities=17% Similarity=0.312 Sum_probs=50.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcccccccc--------ccccccccceeEEEEeeec
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNN--------IVKTKKIFPAIIKLVDIAG 75 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~--------~~~~~~~~~~~i~lvDtpG 75 (363)
-.+|+||||+|||||+++|+| -..|..|.+.+++..++.++. ...+.....+++.++|+..
T Consensus 29 v~ailGPNGAGKSTlLk~LsG-----------el~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~ 97 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSG-----------ELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQ 97 (259)
T ss_pred EEEEECCCCccHHHHHHHhhC-----------ccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHH
Confidence 479999999999999999999 667889999999977655433 3445556667788888887
Q ss_pred ccC
Q psy2401 76 LVS 78 (363)
Q Consensus 76 l~~ 78 (363)
+..
T Consensus 98 mGr 100 (259)
T COG4559 98 MGR 100 (259)
T ss_pred hcc
Confidence 654
No 336
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.06 E-value=8.6e-07 Score=80.47 Aligned_cols=41 Identities=34% Similarity=0.519 Sum_probs=35.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHL 54 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l 54 (363)
--++||||||+|||||||.+|| -..|+.|.+.+.+.++..+
T Consensus 31 ei~~LIGPNGAGKTTlfNlitG-----------~~~P~~G~v~~~G~~it~l 71 (250)
T COG0411 31 EIVGLIGPNGAGKTTLFNLITG-----------FYKPSSGTVIFRGRDITGL 71 (250)
T ss_pred eEEEEECCCCCCceeeeeeecc-----------cccCCCceEEECCcccCCC
Confidence 3589999999999999999999 7789999999999654333
No 337
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.06 E-value=7.5e-06 Score=75.51 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=21.7
Q ss_pred eeEEEEeeecccCCCCcccchhhHHHhhccc--cCEEEEEEecc
Q psy2401 66 AIIKLVDIAGLVSGASKGEGLGNKFLAHIRE--TNIVIHVIRCF 107 (363)
Q Consensus 66 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~--aD~il~Vvda~ 107 (363)
....++||||+.+.-..+ ..+..+...+.. .=++++++|+.
T Consensus 91 ~~y~l~DtPGQiElf~~~-~~~~~i~~~L~~~~~~~~v~LvD~~ 133 (238)
T PF03029_consen 91 DDYLLFDTPGQIELFTHS-DSGRKIVERLQKNGRLVVVFLVDSS 133 (238)
T ss_dssp -SEEEEE--SSHHHHHHS-HHHHHHHHTSSS----EEEEEE-GG
T ss_pred CcEEEEeCCCCEEEEEec-hhHHHHHHHHhhhcceEEEEEEecc
Confidence 368899999987632222 223455555543 34788999984
No 338
>KOG1144|consensus
Probab=98.03 E-value=1.3e-05 Score=82.19 Aligned_cols=97 Identities=16% Similarity=0.231 Sum_probs=62.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccc----cccccccccccceeEEEEeeecccC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKH----LNNIVKTKKIFPAIIKLVDIAGLVS 78 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~----l~~~~~~~~~~~~~i~lvDtpGl~~ 78 (363)
.-|+|+|+-.+|||-|+..|.+..+..+.+.+.|... |...++-..+.. +...-...-.+| -+.+|||||...
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqI--gAt~fp~~ni~e~tk~~~~~~K~~~kvP-g~lvIdtpghEs 552 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQI--GATYFPAENIREKTKELKKDAKKRLKVP-GLLVIDTPGHES 552 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccccccccccceeeec--cccccchHHHHHHHHHHHhhhhhhcCCC-eeEEecCCCchh
Confidence 4589999999999999999999888888877777543 333332221111 111111112333 577999999765
Q ss_pred CCCcccchhhHHHhhccccCEEEEEEecccC
Q psy2401 79 GASKGEGLGNKFLAHIRETNIVIHVIRCFKD 109 (363)
Q Consensus 79 ~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~ 109 (363)
+.... -.....||.+|+|||..++
T Consensus 553 FtnlR-------srgsslC~~aIlvvdImhG 576 (1064)
T KOG1144|consen 553 FTNLR-------SRGSSLCDLAILVVDIMHG 576 (1064)
T ss_pred hhhhh-------hccccccceEEEEeehhcc
Confidence 54321 1223569999999998654
No 339
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.02 E-value=6.5e-06 Score=78.10 Aligned_cols=23 Identities=48% Similarity=0.507 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
..++++|++|||||||+|+|++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~ 184 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPD 184 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhch
Confidence 46899999999999999999986
No 340
>KOG2423|consensus
Probab=98.02 E-value=2.3e-06 Score=82.15 Aligned_cols=59 Identities=36% Similarity=0.439 Sum_probs=45.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCc-cccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKI-SAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~-~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
+.||+||.||+||||++|+|-...+ .+++.||-|.-.+.-++. ..|.+||+||++...+
T Consensus 308 ISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLm--------------------krIfLIDcPGvVyps~ 367 (572)
T KOG2423|consen 308 ISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLM--------------------KRIFLIDCPGVVYPSS 367 (572)
T ss_pred eeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHH--------------------hceeEecCCCccCCCC
Confidence 5699999999999999999988754 488888887544322111 4688999999987654
No 341
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=3.5e-05 Score=71.69 Aligned_cols=83 Identities=20% Similarity=0.179 Sum_probs=57.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCc-----c------cc-----CCCceeecceeEEEEeCCccccccccccccccccce
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKI-----S------AE-----NYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPA 66 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~-----~------~~-----~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~ 66 (363)
.+||.||+-+-|||||..+||..-+ . +. .-.+.|+.+.....+..+ .
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~-----------------r 75 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETAN-----------------R 75 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCC-----------------c
Confidence 5899999999999999999985311 1 11 123667665543333333 5
Q ss_pred eEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccC
Q psy2401 67 IIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKD 109 (363)
Q Consensus 67 ~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~ 109 (363)
+.-.+|+||..+. .+.++....++|..|+||.|.++
T Consensus 76 hyahVDcPGHaDY-------vKNMItgAaqmDgAILVVsA~dG 111 (394)
T COG0050 76 HYAHVDCPGHADY-------VKNMITGAAQMDGAILVVAATDG 111 (394)
T ss_pred eEEeccCCChHHH-------HHHHhhhHHhcCccEEEEEcCCC
Confidence 6788999997543 23556666889999999999654
No 342
>KOG2485|consensus
Probab=97.99 E-value=9.2e-06 Score=76.14 Aligned_cols=65 Identities=26% Similarity=0.404 Sum_probs=49.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcC------CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeec
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKL------KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAG 75 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~------~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpG 75 (363)
...+-++|-||+|||||+|++-.. .+.++++||.|+... ..+.+... ..++++||||
T Consensus 143 ~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~-~~iri~~r----------------p~vy~iDTPG 205 (335)
T KOG2485|consen 143 EYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVS-ERIRISHR----------------PPVYLIDTPG 205 (335)
T ss_pred ceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeeh-hheEeccC----------------CceEEecCCC
Confidence 457889999999999999999532 466889999997644 44555443 4589999999
Q ss_pred ccCCCCcc
Q psy2401 76 LVSGASKG 83 (363)
Q Consensus 76 l~~~~~~~ 83 (363)
...+...+
T Consensus 206 il~P~I~~ 213 (335)
T KOG2485|consen 206 ILVPSIVD 213 (335)
T ss_pred cCCCCCCC
Confidence 98765544
No 343
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.97 E-value=4.7e-05 Score=68.58 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
..|+++|++|||||||++.+...
T Consensus 23 ~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 23 VVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999863
No 344
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.96 E-value=7.5e-06 Score=77.04 Aligned_cols=23 Identities=48% Similarity=0.479 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
...+++|++|||||||+|+|.+.
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCch
Confidence 45789999999999999999874
No 345
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.95 E-value=0.00014 Score=69.80 Aligned_cols=67 Identities=21% Similarity=0.279 Sum_probs=41.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcccc----CCCc----eeecceeEEEEeCCccccccccccccccccceeEEEEeee
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAE----NYPF----CTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIA 74 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~----~~p~----~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtp 74 (363)
++|-++|++|.||||++|.|.+....-+ +... .|+........+.+. .+...++++|||
T Consensus 24 f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~-------------~~~~~l~vIDtp 90 (373)
T COG5019 24 FTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEED-------------GFHLNLTVIDTP 90 (373)
T ss_pred eEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecC-------------CeEEEEEEeccC
Confidence 6789999999999999999998622211 1111 122222222233221 122679999999
Q ss_pred cccCCCCc
Q psy2401 75 GLVSGASK 82 (363)
Q Consensus 75 Gl~~~~~~ 82 (363)
|+.++..-
T Consensus 91 GfGD~idN 98 (373)
T COG5019 91 GFGDFIDN 98 (373)
T ss_pred Cccccccc
Confidence 99875543
No 346
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.92 E-value=0.00014 Score=67.02 Aligned_cols=22 Identities=45% Similarity=0.708 Sum_probs=19.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..|||-|+||+|||||+++|..
T Consensus 30 ~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 30 HVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp EEEEEEE-TTSSHHHHHHHHHH
T ss_pred eEEEeeCCCCCcHHHHHHHHHH
Confidence 5799999999999999999974
No 347
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.92 E-value=6.1e-06 Score=76.11 Aligned_cols=36 Identities=36% Similarity=0.502 Sum_probs=32.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
-++|+||||+|||||+++++| ...|..|.+.+.+.+
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG-----------ll~p~~G~i~~~g~~ 67 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG-----------LLKPSSGEIKIFGKP 67 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC-----------CCcCCcceEEEcccc
Confidence 589999999999999999999 788999999988754
No 348
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=97.89 E-value=4.2e-05 Score=80.65 Aligned_cols=63 Identities=24% Similarity=0.271 Sum_probs=54.4
Q ss_pred CCEEEEeCCCCceEEEeecCCCCHHHhhhhhhcchhcccEEEEEecccccccccChhhHhhcCceeecCCCeeeeCCCEE
Q psy2401 278 DLRTYFTVGKKEIRAWTIPNGTTAEQAAGIIHTDIKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDGDIL 357 (363)
Q Consensus 278 ~li~~ft~g~~e~raw~~~~g~ta~~~A~~IHsD~~~gfi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdii 357 (363)
+-|-||| | .-++..+|+|||+.|+|..||||+...++.|.|- |+ ..+.+|.+++||+|
T Consensus 360 ~~i~vfT--P-kG~~~~lp~gst~~DfAy~ih~~~g~~~~~a~vn-----------------g~--~v~l~~~l~~gd~v 417 (683)
T TIGR00691 360 EEIYVFT--P-KGDVVELPSGSTPVDFAYAVHTDVGNKCTGAKVN-----------------GK--IVPLDKELENGDVV 417 (683)
T ss_pred CceEEEC--C-CCeEEEcCCCCCHHHHHHHHhHHhHhceeEEEEC-----------------CE--ECCCCccCCCCCEE
Confidence 7788888 3 3679999999999999999999999999999955 32 34899999999999
Q ss_pred EEEec
Q psy2401 358 NFLFN 362 (363)
Q Consensus 358 ~~~f~ 362 (363)
+|-.+
T Consensus 418 ei~t~ 422 (683)
T TIGR00691 418 EIITG 422 (683)
T ss_pred EEEeC
Confidence 99764
No 349
>KOG0448|consensus
Probab=97.89 E-value=0.00011 Score=75.24 Aligned_cols=101 Identities=21% Similarity=0.307 Sum_probs=60.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCcee-----ecceeE---EEEeCC--------------------c--cc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCT-----IEPNIG---IIEVPD--------------------K--RL 51 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t-----~~~~~g---~v~~~~--------------------~--~~ 51 (363)
.+||+|.|..++||||++|++...+.-.+..-.|| +.-..| ..-.++ . ..
T Consensus 109 ~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~ 188 (749)
T KOG0448|consen 109 HMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGA 188 (749)
T ss_pred ccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCc
Confidence 48999999999999999999986644333322222 111111 111111 0 00
Q ss_pred ccccccccccc---ccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEec
Q psy2401 52 KHLNNIVKTKK---IFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRC 106 (363)
Q Consensus 52 ~~l~~~~~~~~---~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda 106 (363)
+.+..+++|+. -....+.++|.||+.-+.. +..-..+.+.++|+.++|+.+
T Consensus 189 ~sLlrV~~p~~~csLLrnDivliDsPGld~~se----~tswid~~cldaDVfVlV~Na 242 (749)
T KOG0448|consen 189 GSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE----LTSWIDSFCLDADVFVLVVNA 242 (749)
T ss_pred ceEEEEEecCccchhhhccceeccCCCCCCchh----hhHHHHHHhhcCCeEEEEecC
Confidence 11223556654 1234688999999864433 333556777899999999998
No 350
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.88 E-value=8.4e-05 Score=70.12 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
.-++|+|+||||||||++.+.+.
T Consensus 105 ~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 105 LVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999873
No 351
>KOG1954|consensus
Probab=97.87 E-value=6.4e-05 Score=71.93 Aligned_cols=102 Identities=20% Similarity=0.331 Sum_probs=59.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCC---ccccCCCceeecceeEEEE------eCC--------cccccccc---------c
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLK---ISAENYPFCTIEPNIGIIE------VPD--------KRLKHLNN---------I 57 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~---~~~~~~p~~t~~~~~g~v~------~~~--------~~~~~l~~---------~ 57 (363)
-|-++|+-..||||+++-|+.+. .++++-|.| +.-...+. ++| .++..|.. +
T Consensus 60 mill~GqyStGKTtfi~yLle~dypg~riGpEPTt--d~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 60 MILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTT--DRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred eEEEEeccccchhHHHHHHHhCCCCccccCCCCCc--ceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 47899999999999999999873 346666632 11111111 111 12222222 2
Q ss_pred ccc-ccccceeEEEEeeecccCCCCcc--cch-hhHHHhh-ccccCEEEEEEecc
Q psy2401 58 VKT-KKIFPAIIKLVDIAGLVSGASKG--EGL-GNKFLAH-IRETNIVIHVIRCF 107 (363)
Q Consensus 58 ~~~-~~~~~~~i~lvDtpGl~~~~~~~--~~l-~~~~l~~-~~~aD~il~Vvda~ 107 (363)
|.+ .+.+-.++++|||||+.++.... +++ -+..++. +..||.|++++|+.
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~h 192 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAH 192 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechh
Confidence 222 23444689999999998765432 111 0122222 36799999999985
No 352
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.86 E-value=9e-06 Score=71.77 Aligned_cols=67 Identities=22% Similarity=0.359 Sum_probs=51.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccc-----ccc---ccccccccceeEEEEeeec
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKH-----LNN---IVKTKKIFPAIIKLVDIAG 75 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~-----l~~---~~~~~~~~~~~i~lvDtpG 75 (363)
-.++|||||+|||||+..+++ .+....|.+.+++..+.. |++ +..|.......+++-|..|
T Consensus 29 iTs~IGPNGAGKSTLLS~~sR-----------L~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~ 97 (252)
T COG4604 29 ITSIIGPNGAGKSTLLSMMSR-----------LLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVG 97 (252)
T ss_pred eeEEECCCCccHHHHHHHHHH-----------hccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhh
Confidence 368999999999999999998 677888888888855432 222 5566677777888899999
Q ss_pred ccCCCC
Q psy2401 76 LVSGAS 81 (363)
Q Consensus 76 l~~~~~ 81 (363)
+.+++.
T Consensus 98 FGRfPY 103 (252)
T COG4604 98 FGRFPY 103 (252)
T ss_pred cCCCcc
Confidence 887554
No 353
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.85 E-value=7.9e-06 Score=78.53 Aligned_cols=40 Identities=30% Similarity=0.417 Sum_probs=35.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcccccc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHL 54 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l 54 (363)
-++|+||+|||||||++.|+| ...|+.|.+.++|.....+
T Consensus 31 f~vllGPSGcGKSTlLr~IAG-----------Le~~~~G~I~i~g~~vt~l 70 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAG-----------LEEPTSGEILIDGRDVTDL 70 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhC-----------CCCCCCceEEECCEECCCC
Confidence 379999999999999999999 7789999999999765443
No 354
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=97.83 E-value=5.3e-05 Score=79.88 Aligned_cols=63 Identities=27% Similarity=0.278 Sum_probs=53.2
Q ss_pred CCEEEEeCCCCceEEEeecCCCCHHHhhhhhhcchhcccEEEEEecccccccccChhhHhhcCceeecCCCeeeeCCCEE
Q psy2401 278 DLRTYFTVGKKEIRAWTIPNGTTAEQAAGIIHTDIKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDGDIL 357 (363)
Q Consensus 278 ~li~~ft~g~~e~raw~~~~g~ta~~~A~~IHsD~~~gfi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdii 357 (363)
+-|-|||- + -+...+|+|||+.|+|+.||||+...++.|.|= |+ ....+|.+++||+|
T Consensus 404 d~V~VfTP--k-G~~~~Lp~gaT~lDfAy~iHt~iG~~~~gAkvn-----------------g~--~v~l~~~L~~GD~V 461 (743)
T PRK10872 404 DRVYVFTP--K-GDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIG-----------------GR--IVPFTYQLQMGDQI 461 (743)
T ss_pred CeEEEECC--C-CCeEEcCCCCcHHHHHHHHhHHHHhhceEEEEC-----------------CE--ECCCCcCCCCCCEE
Confidence 66999992 2 249999999999999999999999999999732 42 34899999999999
Q ss_pred EEEec
Q psy2401 358 NFLFN 362 (363)
Q Consensus 358 ~~~f~ 362 (363)
+|..+
T Consensus 462 eIits 466 (743)
T PRK10872 462 EIITQ 466 (743)
T ss_pred EEEeC
Confidence 99764
No 355
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.83 E-value=1.6e-05 Score=72.71 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=32.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
-++|+|++|||||||+|.++| ...|+.|.+.++|..
T Consensus 31 fvsilGpSGcGKSTLLriiAG-----------L~~p~~G~V~~~g~~ 66 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAG-----------LEKPTSGEVLLDGRP 66 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhC-----------CCCCCCceEEECCcc
Confidence 489999999999999999999 778999999998853
No 356
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.82 E-value=2.2e-05 Score=65.49 Aligned_cols=38 Identities=32% Similarity=0.458 Sum_probs=32.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
+-.++|+|+||+|||||+++|+| ...|..|.+.+++..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g-----------~~~~~~G~i~~~~~~ 48 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAG-----------LLPPDSGSILINGKD 48 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTT-----------SSHESEEEEEETTEE
T ss_pred CCEEEEEccCCCccccceeeecc-----------ccccccccccccccc
Confidence 35789999999999999999999 556788999988743
No 357
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.80 E-value=2.3e-05 Score=71.41 Aligned_cols=36 Identities=33% Similarity=0.573 Sum_probs=33.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-++||||+||||||||++.|+| ...|+.|.+.+.+.
T Consensus 54 e~vGiiG~NGaGKSTLlkliaG-----------i~~Pt~G~v~v~G~ 89 (249)
T COG1134 54 ERVGIIGHNGAGKSTLLKLIAG-----------IYKPTSGKVKVTGK 89 (249)
T ss_pred CEEEEECCCCCcHHHHHHHHhC-----------ccCCCCceEEEcce
Confidence 4799999999999999999999 78899999999883
No 358
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.78 E-value=9.8e-05 Score=70.38 Aligned_cols=66 Identities=15% Similarity=0.207 Sum_probs=40.0
Q ss_pred ccccccEEEeccccccCCCchHHHHHHH----HHHhcCC---CcEEEeeHHHHHHHhcCCH-------HHHHHHHhhcCC
Q psy2401 196 LLTIKPIIFVANVKENGFKNNLLLDQLK----IYAHNQN---IPIIIICAKLEEEISDLNN-------IDKKFFLDNLGL 261 (363)
Q Consensus 196 ~l~~kp~i~v~Nk~d~~~~~~~~~~~i~----~~~~~~~---~~~i~~sa~~e~~i~el~~-------~~~~~~l~~~~l 261 (363)
+|--+-+++++||+|+..=.++-.+.|. .++.+.+ ..+||+||....+++.-++ ...-++||...+
T Consensus 136 LLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v~i 215 (431)
T COG2895 136 LLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVSKSENMPWYKGPTLLEILETVEI 215 (431)
T ss_pred HhCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccccccCCCcccCccHHHHHhhccc
Confidence 4456677778999996321233333333 3333333 4689999999999886532 223456665544
No 359
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.75 E-value=2.7e-05 Score=70.75 Aligned_cols=35 Identities=31% Similarity=0.422 Sum_probs=31.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-++|+||+|||||||+|.|.+ ...|+.|.+.+.+.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~-----------ld~pt~G~v~i~g~ 67 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG-----------LDKPTSGEVLINGK 67 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc-----------ccCCCCceEEECCE
Confidence 589999999999999999998 66788899988884
No 360
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.74 E-value=3.1e-05 Score=69.90 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=33.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRL 51 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~ 51 (363)
--++++|+||+|||||+++|+| ...+..|.+.+.|..+
T Consensus 30 eiv~llG~NGaGKTTlLkti~G-----------l~~~~~G~I~~~G~di 67 (237)
T COG0410 30 EIVALLGRNGAGKTTLLKTIMG-----------LVRPRSGRIIFDGEDI 67 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCCeeEEECCeec
Confidence 3589999999999999999999 6667789999998643
No 361
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.73 E-value=3.4e-05 Score=67.90 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=31.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~g~ 61 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAG-----------QLIPNGDNDEWDGI 61 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHc-----------CCCCCCcEEEECCE
Confidence 4689999999999999999999 56688899998873
No 362
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.73 E-value=3.1e-05 Score=67.58 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=32.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-+++|+|++|+|||||+|.+.| -..|..|.+.++|.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAG-----------F~~P~~G~i~i~g~ 61 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAG-----------FETPASGEILINGV 61 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHh-----------ccCCCCceEEEcCe
Confidence 4799999999999999999999 55689999999885
No 363
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.71 E-value=3.9e-05 Score=70.32 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=31.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.+++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G-----------~~~p~~G~i~~~g~ 62 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVG-----------LLRPDSGEVLIDGE 62 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCceEEEECCE
Confidence 4689999999999999999999 55678899988874
No 364
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.71 E-value=4e-05 Score=69.28 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=31.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||++.|+| ...|..|.+.+++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G-----------l~~~~~G~i~~~g~ 65 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILG-----------IEKPTRGKIRFNGQ 65 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCceEEEECCE
Confidence 4689999999999999999999 55677899998874
No 365
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.70 E-value=4.3e-05 Score=69.13 Aligned_cols=36 Identities=31% Similarity=0.386 Sum_probs=31.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.+++.
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~G-----------l~~~~~G~i~~~g~ 66 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGG-----------LDRPTSGEVRVDGT 66 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhC-----------CcCCCceeEEECCE
Confidence 4689999999999999999999 55678899988874
No 366
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.69 E-value=0.00023 Score=66.14 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=32.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++.|++|+|||||+|.++| +..|..|.+.++|.
T Consensus 26 vTAlFG~SGsGKTslin~IaG-----------L~rPdeG~I~lngr 60 (352)
T COG4148 26 ITALFGPSGSGKTSLINMIAG-----------LTRPDEGRIELNGR 60 (352)
T ss_pred eEEEecCCCCChhhHHHHHhc-----------cCCccccEEEECCE
Confidence 368999999999999999999 88999999999995
No 367
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.68 E-value=4.7e-05 Score=68.31 Aligned_cols=36 Identities=31% Similarity=0.314 Sum_probs=31.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||++.|+| ...|..|.+.+++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~g~ 62 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAG-----------LIKESSGSILLNGK 62 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCCCceEEEECCE
Confidence 4689999999999999999999 55678899988874
No 368
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.68 E-value=4.8e-05 Score=67.39 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=31.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.+++.
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G-----------~~~~~~G~i~~~g~ 54 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNG-----------LLRPQSGAVLIDGE 54 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCceeEEECCE
Confidence 4689999999999999999999 55677888888873
No 369
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.67 E-value=4.4e-05 Score=68.72 Aligned_cols=36 Identities=31% Similarity=0.357 Sum_probs=31.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g~ 63 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNG-----------LLGPTSGEVLVDGK 63 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhc-----------CCCCCCceEEECCE
Confidence 4689999999999999999999 55677888888873
No 370
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.67 E-value=4.9e-05 Score=68.57 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=31.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||++.|+| ...|..|.+.+++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G-----------~~~p~~G~i~~~g~ 62 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAG-----------LERPDSGEILIDGR 62 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhC-----------CCCCCCeEEEECCE
Confidence 4689999999999999999999 55678899988874
No 371
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.66 E-value=5.3e-05 Score=67.87 Aligned_cols=36 Identities=28% Similarity=0.308 Sum_probs=31.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g~ 60 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGL-----------LEKFDSGQVYLNGK 60 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhc-----------CCCCCCeEEEECCE
Confidence 4689999999999999999999 55678899888874
No 372
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.66 E-value=4.6e-05 Score=68.67 Aligned_cols=35 Identities=31% Similarity=0.550 Sum_probs=30.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G-----------l~~~~~G~i~~~g~ 61 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT-----------LTPPSSGTIRIDGQ 61 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC-----------CCCCCccEEEECCC
Confidence 689999999999999999999 45677888888874
No 373
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.65 E-value=5.5e-05 Score=68.64 Aligned_cols=36 Identities=31% Similarity=0.450 Sum_probs=31.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||++.|+| ...|..|.+.+++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G-----------~~~~~~G~i~~~g~ 62 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTT-----------LLKPTSGRATVAGH 62 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCceEEEECCE
Confidence 4689999999999999999999 45677888888773
No 374
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.64 E-value=6.1e-05 Score=67.38 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=32.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G-----------~~~~~~G~v~~~g~~ 64 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAG-----------LLNPEKGEILFERQS 64 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCCCCeeEEECCCc
Confidence 4689999999999999999999 556788999888743
No 375
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.64 E-value=6.2e-05 Score=63.87 Aligned_cols=35 Identities=34% Similarity=0.582 Sum_probs=30.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPD 48 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~ 48 (363)
-.++|+|+||+|||||+++|+| ...|..|.+.+++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G-----------~~~~~~G~i~~~~ 61 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAG-----------ELEPDEGIVTWGS 61 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcC-----------CCCCCceEEEECC
Confidence 4689999999999999999999 5567889998877
No 376
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.64 E-value=2.7e-05 Score=75.32 Aligned_cols=39 Identities=23% Similarity=0.414 Sum_probs=34.4
Q ss_pred EEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcccccc
Q psy2401 5 CGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHL 54 (363)
Q Consensus 5 i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l 54 (363)
++|+||+|||||||+++|+| -..|+.|.+.++|..+..+
T Consensus 34 ~~lLGPSGcGKTTlLR~IAG-----------fe~p~~G~I~l~G~~i~~l 72 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAG-----------FEQPSSGEILLDGEDITDV 72 (352)
T ss_pred EEEECCCCCCHHHHHHHHhC-----------CCCCCCceEEECCEECCCC
Confidence 68999999999999999999 6679999999999765544
No 377
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.64 E-value=5.6e-05 Score=68.19 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=30.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.+++.
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~G-----------l~~~~~G~i~~~g~ 64 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYG-----------ALTPSRGQVRIAGE 64 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCCceEEECCE
Confidence 4689999999999999999999 44577888888773
No 378
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64 E-value=6.1e-05 Score=67.80 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||++.|+| ...|..|.+.+++.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g~ 62 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILG-----------IILPDSGEVLFDGK 62 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhC-----------CCCCCceEEEECCC
Confidence 4689999999999999999999 45678899998874
No 379
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.63 E-value=0.0025 Score=64.31 Aligned_cols=92 Identities=17% Similarity=0.152 Sum_probs=52.4
Q ss_pred cccEEEeccccccCC--C-----chHHHHHHH----HHHhcCCCcEEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHH
Q psy2401 199 IKPIIFVANVKENGF--K-----NNLLLDQLK----IYAHNQNIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLN 267 (363)
Q Consensus 199 ~kp~i~v~Nk~d~~~--~-----~~~~~~~i~----~~~~~~~~~~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~ 267 (363)
..|+++|++|+|.-. . .++..+.|+ .++-.+|..++.+|.+.+ ..++
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~----------------------~n~~ 253 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEE----------------------KNLD 253 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeecccc----------------------ccHH
Confidence 579999999999521 0 134444444 444567888999998733 3343
Q ss_pred HHHHHHHHhCCCEEEEeCC--CCceEEEeecCCCCHHHhhhhhhcchh
Q psy2401 268 DLIRASFSLLDLRTYFTVG--KKEIRAWTIPNGTTAEQAAGIIHTDIK 313 (363)
Q Consensus 268 ~l~~~~~~~l~li~~ft~g--~~e~raw~~~~g~ta~~~A~~IHsD~~ 313 (363)
.+.+-+...+--.+| +.. -.+..+..||.|.--...-+.+|..|.
T Consensus 254 ~L~~yi~h~l~~~~f-~~~~~vv~~d~ifIP~GwDs~~kI~il~e~f~ 300 (472)
T PF05783_consen 254 LLYKYILHRLYGFPF-KTPAQVVERDAIFIPAGWDSWGKIRILRENFD 300 (472)
T ss_pred HHHHHHHHHhccCCC-CCCceeecccccccCCCCCCHHhcCccccccc
Confidence 333333333221222 211 134579999999755544466665554
No 380
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.63 E-value=5.6e-05 Score=69.09 Aligned_cols=36 Identities=28% Similarity=0.472 Sum_probs=31.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||++.|+| ...|..|.+.++|.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~g~ 62 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVG-----------LVKPDSGKILLDGQ 62 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhC-----------CCCCCCcEEEECCE
Confidence 4689999999999999999999 55678888888874
No 381
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.63 E-value=6.5e-05 Score=67.75 Aligned_cols=36 Identities=33% Similarity=0.375 Sum_probs=31.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||++.|+| ...|..|.+.+++.
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g~ 63 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYK-----------EELPTSGTIRVNGQ 63 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCCCceEEEECCE
Confidence 4689999999999999999999 44577888888874
No 382
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.63 E-value=5.8e-05 Score=68.00 Aligned_cols=36 Identities=31% Similarity=0.380 Sum_probs=31.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.+++.
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g~ 62 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINL-----------LEEPDSGTIIIDGL 62 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCCceEEECCE
Confidence 4689999999999999999999 45577888888873
No 383
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.63 E-value=5.9e-05 Score=68.39 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=31.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.+++.
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~G-----------~~~~~~G~i~~~g~ 67 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLGG-----------LDNPTSGEVLFNGQ 67 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHhC-----------CCCCCCcEEEECCE
Confidence 4689999999999999999999 55678888888874
No 384
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.62 E-value=6e-05 Score=68.31 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.+++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G-----------l~~~~~G~i~~~g~ 64 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTG-----------ELRPTSGTAYINGY 64 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhC-----------CCCCCCcEEEECCE
Confidence 3689999999999999999999 55678899888873
No 385
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.62 E-value=5.3e-05 Score=72.09 Aligned_cols=35 Identities=34% Similarity=0.486 Sum_probs=32.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-+||+|+||||||||+++|+| ...|+.|.+.+.|.
T Consensus 33 i~gllG~NGAGKTTllk~l~g-----------l~~p~~G~i~i~G~ 67 (293)
T COG1131 33 IFGLLGPNGAGKTTLLKILAG-----------LLKPTSGEILVLGY 67 (293)
T ss_pred EEEEECCCCCCHHHHHHHHhC-----------CcCCCceEEEEcCE
Confidence 489999999999999999999 77889999999884
No 386
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.62 E-value=6.5e-05 Score=66.93 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=31.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||+++|+| ...|+.|.+.+++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g~ 62 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAG-----------IMQPSSGNIYYKNC 62 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhc-----------CCCCCCcEEEECCc
Confidence 4689999999999999999999 55677899888874
No 387
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=6.9e-05 Score=67.99 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=31.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.+++.
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~G-----------l~~~~~G~i~~~g~ 66 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAG-----------LERPTSGEVLVDGE 66 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhC-----------CCCCCceEEEECCE
Confidence 4689999999999999999999 45577899888874
No 388
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.61 E-value=0.00083 Score=61.28 Aligned_cols=36 Identities=33% Similarity=0.418 Sum_probs=32.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.+||+|++|||||||.++|.| -..|..|.+.++|.
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G-----------l~~p~~G~I~~~G~ 69 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG-----------LEKPSSGSILLDGK 69 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc-----------ccCCCCceEEECCc
Confidence 4689999999999999999999 77889999999985
No 389
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.61 E-value=6.1e-05 Score=68.31 Aligned_cols=36 Identities=25% Similarity=0.438 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||++.|+| ...|+.|.+.+++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G-----------l~~~~~G~i~~~g~ 62 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMG-----------LLPPRSGSIRFDGR 62 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhC-----------CCCCCCceEEECCE
Confidence 4689999999999999999999 55678899888874
No 390
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.61 E-value=6.3e-05 Score=68.47 Aligned_cols=36 Identities=36% Similarity=0.466 Sum_probs=31.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||++.|+| ...|..|.+.+++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g~ 67 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILG-----------LLKPTSGSIIFDGK 67 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCCceEEECCE
Confidence 4689999999999999999999 55678888888874
No 391
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.60 E-value=6.1e-05 Score=68.28 Aligned_cols=36 Identities=31% Similarity=0.477 Sum_probs=32.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
-|+|||++|||||||+++|.+ +.+|+.|.+.+++.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng-----------l~d~t~G~i~~~g~~ 67 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG-----------LVDPTSGEILFNGVQ 67 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc-----------ccCCCcceEEecccc
Confidence 589999999999999999999 889999999988853
No 392
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.60 E-value=7.2e-05 Score=68.53 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=31.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||++.|+| ...|..|.+.+++.
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~G-----------l~~~~~G~i~~~g~ 71 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGG-----------LDTPTSGDVIFNGQ 71 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhc-----------CCCCCceEEEECCE
Confidence 4689999999999999999999 55678899998884
No 393
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.59 E-value=5.8e-05 Score=67.60 Aligned_cols=35 Identities=34% Similarity=0.520 Sum_probs=31.7
Q ss_pred EEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 5 CGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 5 i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
|.++|.||+|||||+|+++| ...|..|.+.+++.+
T Consensus 35 vtViGsNGAGKSTlln~iaG-----------~l~~t~G~I~Idg~d 69 (263)
T COG1101 35 VTVIGSNGAGKSTLLNAIAG-----------DLKPTSGQILIDGVD 69 (263)
T ss_pred EEEEcCCCccHHHHHHHhhC-----------ccccCCceEEECcee
Confidence 67899999999999999999 788999999998853
No 394
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.59 E-value=7.2e-05 Score=65.91 Aligned_cols=36 Identities=31% Similarity=0.366 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g~ 62 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFG-----------LRPPASGEITLDGK 62 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhC-----------CCCCCCceEEECCE
Confidence 4689999999999999999999 55678888888873
No 395
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.59 E-value=6.4e-05 Score=67.82 Aligned_cols=36 Identities=33% Similarity=0.445 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G-----------~~~p~~G~i~~~g~ 61 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILG-----------LLKPTSGSIRVFGK 61 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcC-----------CCCCCCCEEEECCc
Confidence 4689999999999999999999 45677889888874
No 396
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.59 E-value=8.4e-05 Score=64.36 Aligned_cols=37 Identities=35% Similarity=0.434 Sum_probs=31.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
-.++|+|++|+|||||++.|+| ...|..|.+.+++..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G-----------~~~~~~G~v~~~g~~ 63 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSG-----------LYKPDSGEILVDGKE 63 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCCeEEEECCEE
Confidence 4689999999999999999999 456778888888743
No 397
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.58 E-value=7.3e-05 Score=67.64 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=31.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||++.|+| ...|..|.+.+++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G-----------l~~~~~G~i~~~g~ 67 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAG-----------LLEPDAGFATVDGF 67 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhC-----------CcCCCCceEEECCE
Confidence 4689999999999999999999 55678899988874
No 398
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.58 E-value=7.5e-05 Score=71.32 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=32.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.+||+|+||||||||++.|+| ...|..|.+.++|.
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~G-----------l~~p~~G~i~~~g~ 55 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTT-----------LLRPTSGTARVAGY 55 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhC-----------CCCCCceEEEECCE
Confidence 4689999999999999999999 66788899999884
No 399
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.58 E-value=8e-05 Score=67.40 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=31.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G-----------~~~~~~G~i~~~g~ 73 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAG-----------LLHVESGQIQIDGK 73 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhC-----------CCCCCCeeEEECCE
Confidence 4789999999999999999999 55678899988874
No 400
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=8.5e-05 Score=65.21 Aligned_cols=36 Identities=31% Similarity=0.440 Sum_probs=30.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||+++|+| -..|..|.+.+++.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g~ 62 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAG-----------LEEPDSGSILIDGE 62 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCceEEEECCE
Confidence 4689999999999999999999 44567888888773
No 401
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.58 E-value=7.7e-05 Score=68.68 Aligned_cols=36 Identities=31% Similarity=0.494 Sum_probs=31.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.++|.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~G-----------l~~~~~G~i~~~g~ 64 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINR-----------LVEPSSGSILLEGT 64 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CcCCCccEEEECCE
Confidence 4689999999999999999999 55677888888874
No 402
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=8.1e-05 Score=68.47 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=31.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||+++|+| ...|..|.+.+++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G-----------l~~~~~G~i~~~g~ 64 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAG-----------LERPDSGTILFGGE 64 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCceEEEECCE
Confidence 4689999999999999999999 45577899988874
No 403
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.57 E-value=8.1e-05 Score=66.45 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=30.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g~ 62 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAG-----------LLRPDSGEVRWNGT 62 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhC-----------CCCCCccEEEECCE
Confidence 4689999999999999999999 44577888888874
No 404
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=7.5e-05 Score=68.33 Aligned_cols=36 Identities=31% Similarity=0.429 Sum_probs=31.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.+++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g~ 67 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCING-----------LERPTSGSVLVDGT 67 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCCceEEECCE
Confidence 4689999999999999999999 45677888888873
No 405
>KOG2486|consensus
Probab=97.57 E-value=0.00038 Score=64.53 Aligned_cols=85 Identities=21% Similarity=0.162 Sum_probs=51.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC--cc-ccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccC-
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK--IS-AENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVS- 78 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~--~~-~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~- 78 (363)
..+++.|.+|+|||+|+|.++... +. .+..|+.|...+... +. -.+.++|.||+..
T Consensus 137 pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~--v~------------------~~~~~vDlPG~~~a 196 (320)
T KOG2486|consen 137 PELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH--VG------------------KSWYEVDLPGYGRA 196 (320)
T ss_pred ceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee--cc------------------ceEEEEecCCcccc
Confidence 578999999999999999999763 22 233566665544332 22 4688999999542
Q ss_pred ----CCCc-ccchhhHHHhhccccCEEEEEEecc
Q psy2401 79 ----GASK-GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 79 ----~~~~-~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.+.. +..+...++..-++--.+.+.+|++
T Consensus 197 ~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~s 230 (320)
T KOG2486|consen 197 GYGFELPADWDKFTKSYLLERENLVRVFLLVDAS 230 (320)
T ss_pred cCCccCcchHhHhHHHHHHhhhhhheeeeeeecc
Confidence 1111 2223334443334444556667764
No 406
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=7.6e-05 Score=69.52 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=31.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.++|.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~g~ 63 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAG-----------FVPYQHGSITLDGK 63 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCCcEEEECCE
Confidence 4689999999999999999999 55677888888774
No 407
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.57 E-value=8.6e-05 Score=66.73 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=31.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G-----------l~~~~~G~i~~~g~ 62 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILG-----------LIKPDSGEITFDGK 62 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhC-----------CcCCCceEEEECCC
Confidence 4689999999999999999999 55678899988874
No 408
>PRK10908 cell division protein FtsE; Provisional
Probab=97.57 E-value=8.7e-05 Score=67.43 Aligned_cols=36 Identities=28% Similarity=0.294 Sum_probs=31.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||+++|+| ...|..|.+.+++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g~ 64 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICG-----------IERPSAGKIWFSGH 64 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCceEEEECCE
Confidence 4689999999999999999999 45678899888874
No 409
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.57 E-value=7.4e-05 Score=68.45 Aligned_cols=36 Identities=33% Similarity=0.519 Sum_probs=31.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.+++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G-----------l~~~~~G~i~~~g~ 62 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFNLISG-----------FLRPTSGSVLFDGE 62 (236)
T ss_pred cEEEEECCCCCCHHHHHHHHcC-----------CCCCCCceEEECCE
Confidence 4689999999999999999999 45577888888774
No 410
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.57 E-value=8.7e-05 Score=66.88 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=31.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G-----------~~~~~~G~v~~~g~ 62 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAG-----------LEEPTSGRIYIGGR 62 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhC-----------CCCCCceEEEECCE
Confidence 4689999999999999999999 45677888888874
No 411
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.56 E-value=8.8e-05 Score=68.09 Aligned_cols=36 Identities=36% Similarity=0.438 Sum_probs=31.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.+++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G-----------~~~p~~G~i~~~g~ 63 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTR-----------LYVAQEGQISVAGH 63 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CcCCCceEEEECCE
Confidence 4689999999999999999999 45678899988773
No 412
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.56 E-value=8.4e-05 Score=67.71 Aligned_cols=36 Identities=33% Similarity=0.433 Sum_probs=30.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceee-----cceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTI-----EPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~-----~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| .. .|..|.+.+++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G-----------~~~~~~~~~~~G~i~~~g~ 67 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNR-----------LNDLIPGAPDEGEVLLDGK 67 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHh-----------hcccccCCCCCeEEEECCE
Confidence 4689999999999999999999 33 577899888874
No 413
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.56 E-value=5.6e-05 Score=68.72 Aligned_cols=42 Identities=24% Similarity=0.412 Sum_probs=36.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcccccccc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNN 56 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~ 56 (363)
-.+++|++|+|||||++.+.| ...|..|.+.+.|..+..+++
T Consensus 36 i~~iiGgSGsGKStlLr~I~G-----------ll~P~~GeI~i~G~~i~~ls~ 77 (263)
T COG1127 36 ILAILGGSGSGKSTLLRLILG-----------LLRPDKGEILIDGEDIPQLSE 77 (263)
T ss_pred EEEEECCCCcCHHHHHHHHhc-----------cCCCCCCeEEEcCcchhccCH
Confidence 479999999999999999999 888999999999976655544
No 414
>KOG4423|consensus
Probab=97.56 E-value=4.5e-06 Score=72.50 Aligned_cols=158 Identities=17% Similarity=0.123 Sum_probs=92.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.++-++|.-|+|||+++....-....-.-......+.......|++..+ ..+++||++|..++..
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~--------------vRlqLwdIagQerfg~- 90 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTI--------------VRLQLWDIAGQERFGN- 90 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHH--------------HHHHHhcchhhhhhcc-
Confidence 4678999999999999988864311100001111223334456666433 5688999999875443
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
...-+.+.+.+..+|+|.+.... -+|
T Consensus 91 ------mtrVyykea~~~~iVfdvt~s~t-------fe~----------------------------------------- 116 (229)
T KOG4423|consen 91 ------MTRVYYKEAHGAFIVFDVTRSLT-------FEP----------------------------------------- 116 (229)
T ss_pred ------eEEEEecCCcceEEEEEcccccc-------ccH-----------------------------------------
Confidence 22234478899999999864210 000
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCC-CchHHHHHHHHHHhcCCC-cEEEeeHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGF-KNNLLLDQLKIYAHNQNI-PIIIICAKL 240 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~-~~~~~~~~i~~~~~~~~~-~~i~~sa~~ 240 (363)
+.+|-.+-....+ +.+-+..|++..+||.|..- ..++....+.++.+++|+ ....+|++-
T Consensus 117 -----~skwkqdldsk~q-------------Lpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Ke 178 (229)
T KOG4423|consen 117 -----VSKWKQDLDSKLQ-------------LPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKE 178 (229)
T ss_pred -----HHHHHHhccCccc-------------CCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccc
Confidence 1111111000111 12226778899999999642 123344667777788875 478899996
Q ss_pred HHHHhcC
Q psy2401 241 EEEISDL 247 (363)
Q Consensus 241 e~~i~el 247 (363)
+.++.|.
T Consensus 179 nkni~Ea 185 (229)
T KOG4423|consen 179 NKNIPEA 185 (229)
T ss_pred ccChhHH
Confidence 6665443
No 415
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.56 E-value=8.9e-05 Score=67.61 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=31.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~G-----------l~~p~~G~i~~~g~ 72 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAG-----------LDDGSSGEVSLVGQ 72 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHc-----------CCCCCCeeEEECCE
Confidence 4689999999999999999999 55678899888874
No 416
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.56 E-value=7.8e-05 Score=68.07 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=31.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.+++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g~ 62 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMG-----------LLPVKSGSIRLDGE 62 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCCCEEEECCE
Confidence 4689999999999999999999 55678899888873
No 417
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.56 E-value=8.8e-05 Score=65.24 Aligned_cols=36 Identities=33% Similarity=0.515 Sum_probs=31.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G-----------~~~~~~G~v~~~g~ 61 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAG-----------LLKPSSGEILLDGK 61 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCCcEEEECCE
Confidence 4689999999999999999999 55678899988873
No 418
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.54 E-value=9.3e-05 Score=66.28 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=30.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g~ 62 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAG-----------LSPPLAGRVLLNGG 62 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCCcEEEECCE
Confidence 4799999999999999999999 44577788888773
No 419
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.54 E-value=9.4e-05 Score=69.52 Aligned_cols=37 Identities=32% Similarity=0.442 Sum_probs=31.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.++|..
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~g~~ 70 (272)
T PRK15056 34 SIAALVGVNGSGKSTLFKALMG-----------FVRLASGKISILGQP 70 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCceEEEECCEE
Confidence 4689999999999999999999 556788999888843
No 420
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.54 E-value=9.1e-05 Score=68.18 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=31.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g~ 65 (241)
T PRK10895 30 EIVGLLGPNGAGKTTTFYMVVG-----------IVPRDAGNIIIDDE 65 (241)
T ss_pred cEEEEECCCCCCHHHHHHHHhC-----------CCCCCCcEEEECCE
Confidence 4689999999999999999999 45677888888874
No 421
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=9.6e-05 Score=66.56 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=31.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||++.|+| ...|..|.+.+++.
T Consensus 25 e~~~l~G~nGsGKSTLl~~l~g-----------l~~~~~G~i~~~g~ 60 (211)
T cd03298 25 EITAIVGPSGSGKSTLLNLIAG-----------FETPQSGRVLINGV 60 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCCceEEECCE
Confidence 4689999999999999999999 45677888888874
No 422
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.53 E-value=9.7e-05 Score=66.47 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=30.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g~ 64 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAG-----------LLPPAAGTIKLDGG 64 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCCceEEECCE
Confidence 4689999999999999999999 44577888888773
No 423
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=9.6e-05 Score=67.90 Aligned_cols=36 Identities=33% Similarity=0.480 Sum_probs=31.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.+++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G-----------l~~~~~G~i~~~g~ 63 (241)
T cd03256 28 EFVALIGPSGAGKSTLLRCLNG-----------LVEPTSGSVLIDGT 63 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CcCCCCceEEECCE
Confidence 4689999999999999999999 44577888888874
No 424
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.53 E-value=9.5e-05 Score=70.08 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=32.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||+++|+| ...|..|.+.+++.
T Consensus 34 e~~~iiG~NGaGKSTLl~~l~G-----------l~~p~~G~i~~~g~ 69 (287)
T PRK13641 34 SFVALVGHTGSGKSTLMQHFNA-----------LLKPSSGTITIAGY 69 (287)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCCCCcEEEECCE
Confidence 4689999999999999999999 66788999999884
No 425
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.53 E-value=0.0001 Score=66.07 Aligned_cols=36 Identities=36% Similarity=0.446 Sum_probs=32.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+||+|||||||+++|.+ .-.|+.|.+.++|.
T Consensus 29 evv~iiGpSGSGKSTlLRclN~-----------LE~~~~G~I~i~g~ 64 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG-----------LEEPDSGSITVDGE 64 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC-----------CcCCCCceEEECCE
Confidence 3689999999999999999998 66789999999884
No 426
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.52 E-value=9.7e-05 Score=67.63 Aligned_cols=36 Identities=33% Similarity=0.427 Sum_probs=31.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||+++|+| ...|..|.+.++|.
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~g~ 47 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISG-----------LAQPTSGGVILEGK 47 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCCceEEECCE
Confidence 4689999999999999999999 55678899988874
No 427
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.52 E-value=9.4e-05 Score=69.44 Aligned_cols=36 Identities=36% Similarity=0.521 Sum_probs=31.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||+++|+| ...|..|.+.+++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~g~ 63 (271)
T PRK13638 28 PVTGLVGANGCGKSTLFMNLSG-----------LLRPQKGAVLWQGK 63 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHcC-----------CCCCCccEEEECCE
Confidence 4689999999999999999999 55688899988874
No 428
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.52 E-value=0.00011 Score=67.62 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=31.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPD 48 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~ 48 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++
T Consensus 48 e~~~i~G~NGsGKSTLl~~i~G-----------l~~p~~G~i~~~g 82 (236)
T cd03267 48 EIVGFIGPNGAGKTTTLKILSG-----------LLQPTSGEVRVAG 82 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CcCCCceEEEECC
Confidence 4689999999999999999999 5567889988877
No 429
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.52 E-value=0.0001 Score=70.39 Aligned_cols=36 Identities=36% Similarity=0.454 Sum_probs=31.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.+||+|+||||||||++.|+| ...|..|.+.++|.
T Consensus 31 e~~~l~G~NGaGKSTLl~~l~G-----------l~~p~~G~i~~~g~ 66 (303)
T TIGR01288 31 ECFGLLGPNGAGKSTIARMLLG-----------MISPDRGKITVLGE 66 (303)
T ss_pred cEEEEECCCCCCHHHHHHHHhC-----------CCCCCceEEEECCE
Confidence 4689999999999999999999 55678899988874
No 430
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.52 E-value=0.00011 Score=67.70 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=31.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g~ 64 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNL-----------LEMPRSGTLNIAGN 64 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCceEEEECCE
Confidence 4689999999999999999999 55678899998884
No 431
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.52 E-value=0.0001 Score=66.15 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=31.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G-----------~~~p~~G~v~~~g~ 63 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAG-----------LARPDAGEVLWQGE 63 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhC-----------CCCCCCcEEEECCE
Confidence 4689999999999999999999 45577888888773
No 432
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.51 E-value=0.00012 Score=64.04 Aligned_cols=36 Identities=33% Similarity=0.513 Sum_probs=30.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| -..|..|.+.+++.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G-----------~~~~~~G~i~~~g~ 62 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILG-----------LLKPDSGEIKVLGK 62 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhC-----------CCCCCCeEEEECCE
Confidence 4689999999999999999999 44567888888773
No 433
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.51 E-value=0.0001 Score=67.88 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||++.|+| ...|..|.+.+++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~g~ 65 (241)
T PRK14250 30 AIYTIVGPSGAGKSTLIKLINR-----------LIDPTEGSILIDGV 65 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCCcEEEECCE
Confidence 4689999999999999999999 45678899988874
No 434
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.51 E-value=0.00011 Score=67.51 Aligned_cols=36 Identities=31% Similarity=0.281 Sum_probs=31.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||+++|+| ...|..|.+.+++.
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g~ 63 (240)
T PRK09493 28 EVVVIIGPSGSGKSTLLRCINK-----------LEEITSGDLIVDGL 63 (240)
T ss_pred cEEEEECCCCCCHHHHHHHHhC-----------CCCCCceEEEECCE
Confidence 4689999999999999999999 55688899998884
No 435
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.51 E-value=0.00011 Score=69.29 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=32.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||+++|+| ...|..|.+.++|.
T Consensus 31 e~~~i~G~NGsGKSTLl~~l~G-----------l~~p~~G~i~~~g~ 66 (277)
T PRK13652 31 SRIAVIGPNGAGKSTLFRHFNG-----------ILKPTSGSVLIRGE 66 (277)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCCCceEEEECCE
Confidence 4689999999999999999999 66788999998884
No 436
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.51 E-value=0.00011 Score=71.44 Aligned_cols=36 Identities=31% Similarity=0.388 Sum_probs=32.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.+||+|+||||||||++.|+| ...|+.|.+.++|.
T Consensus 68 ei~gLlGpNGaGKSTLl~~L~G-----------l~~p~~G~i~i~G~ 103 (340)
T PRK13536 68 ECFGLLGPNGAGKSTIARMILG-----------MTSPDAGKITVLGV 103 (340)
T ss_pred CEEEEECCCCCCHHHHHHHHHc-----------CCCCCceEEEECCE
Confidence 4689999999999999999999 66788999999884
No 437
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.51 E-value=0.00011 Score=70.38 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=32.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.+||+|+||||||||++.|+| ...|+.|.+.++|.
T Consensus 34 ei~gllGpNGaGKSTLl~~l~G-----------l~~p~~G~v~i~G~ 69 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLG-----------LTHPDAGSISLCGE 69 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhc-----------CCCCCceEEEECCE
Confidence 3589999999999999999999 66788999999884
No 438
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.51 E-value=0.00011 Score=67.86 Aligned_cols=36 Identities=31% Similarity=0.454 Sum_probs=31.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||+++|+| ...|..|.+.+++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g~ 65 (250)
T PRK11264 30 EVVAIIGPSGSGKTTLLRCINL-----------LEQPEAGTIRVGDI 65 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCCCCeEEEECCE
Confidence 4689999999999999999999 45577888888873
No 439
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=0.00011 Score=67.75 Aligned_cols=36 Identities=31% Similarity=0.387 Sum_probs=31.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||+++|+| ...|..|.+.+++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g~ 63 (242)
T cd03295 28 EFLVLIGPSGSGKTTTMKMINR-----------LIEPTSGEIFIDGE 63 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCCCCceEEECCe
Confidence 4689999999999999999999 45677888888874
No 440
>PRK01889 GTPase RsgA; Reviewed
Probab=97.50 E-value=0.00011 Score=71.84 Aligned_cols=23 Identities=48% Similarity=0.546 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
.+++++|.||+|||||+|+|++.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 47999999999999999999983
No 441
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=0.00011 Score=69.72 Aligned_cols=36 Identities=36% Similarity=0.474 Sum_probs=32.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.+||+|+||+|||||+++|+| ...|+.|.+.++|.
T Consensus 34 e~~~i~G~nGaGKSTLl~~l~G-----------l~~p~~G~i~~~g~ 69 (287)
T PRK13637 34 EFVGLIGHTGSGKSTLIQHLNG-----------LLKPTSGKIIIDGV 69 (287)
T ss_pred CEEEEECCCCCcHHHHHHHHhc-----------CCCCCccEEEECCE
Confidence 4699999999999999999999 66788999999884
No 442
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=0.0001 Score=66.56 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=30.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 25 ~~~i~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g~ 59 (214)
T cd03297 25 VTGIFGASGAGKSTLLRCIAG-----------LEKPDGGTIVLNGT 59 (214)
T ss_pred eEEEECCCCCCHHHHHHHHhC-----------CCCCCCceEEECCE
Confidence 579999999999999999999 55677888888773
No 443
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.50 E-value=0.00011 Score=67.06 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=30.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g~ 69 (225)
T PRK10247 34 EFKLITGPSGCGKSTLLKIVAS-----------LISPTSGTLLFEGE 69 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------ccCCCCCeEEECCE
Confidence 4689999999999999999999 44577888888773
No 444
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=0.00011 Score=67.08 Aligned_cols=36 Identities=28% Similarity=0.449 Sum_probs=31.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||+++|+| ...|..|.+.+++.
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g~ 65 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMR-----------FYDPQKGQILIDGI 65 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CcCCCCCEEEECCE
Confidence 4689999999999999999999 45577888888874
No 445
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.49 E-value=0.00012 Score=68.69 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=31.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.++|.
T Consensus 36 e~~~I~G~nGsGKSTLl~~i~G-----------l~~~~~G~i~~~g~ 71 (269)
T PRK13648 36 QWTSIVGHNGSGKSTIAKLMIG-----------IEKVKSGEIFYNNQ 71 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCCCceEEEECCE
Confidence 4689999999999999999999 55678899988874
No 446
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.49 E-value=0.00011 Score=68.49 Aligned_cols=36 Identities=31% Similarity=0.537 Sum_probs=31.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~g~ 68 (258)
T PRK11701 33 EVLGIVGESGSGKTTLLNALSA-----------RLAPDAGEVHYRMR 68 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCCCEEEECCc
Confidence 4689999999999999999999 55678888888873
No 447
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=0.00011 Score=67.19 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.++|.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~g~ 64 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPR-----------FYDVDSGRILIDGH 64 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------cccCCCCEEEECCE
Confidence 4689999999999999999999 55678888888874
No 448
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.49 E-value=0.00012 Score=69.08 Aligned_cols=36 Identities=31% Similarity=0.412 Sum_probs=31.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||++.|+| ...|..|.+.+++.
T Consensus 34 e~~~l~G~nGsGKSTLl~~i~G-----------l~~p~~G~i~~~g~ 69 (280)
T PRK13649 34 SYTAFIGHTGSGKSTIMQLLNG-----------LHVPTQGSVRVDDT 69 (280)
T ss_pred cEEEEECCCCCCHHHHHHHHhC-----------CCCCCceEEEECCE
Confidence 3689999999999999999999 55678899998874
No 449
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.49 E-value=0.00011 Score=68.18 Aligned_cols=37 Identities=35% Similarity=0.468 Sum_probs=32.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
-.++|+|+||+|||||+++|+| ...|..|.+.+++..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G-----------l~~~~~G~i~~~g~~ 68 (255)
T PRK11300 32 EIVSLIGPNGAGKTTVFNCLTG-----------FYKPTGGTILLRGQH 68 (255)
T ss_pred eEEEEECCCCCCHHHHHHHHhC-----------CcCCCcceEEECCEE
Confidence 4689999999999999999999 556788999988843
No 450
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.49 E-value=0.00011 Score=67.64 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=31.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||+++|+| ...|..|.+.+++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~G-----------~~~p~~G~i~~~g~ 64 (242)
T TIGR03411 29 ELRVIIGPNGAGKTTMMDVITG-----------KTRPDEGSVLFGGT 64 (242)
T ss_pred cEEEEECCCCCCHHHHHHHHhC-----------CCCCCCCeEEECCe
Confidence 4689999999999999999999 55678899988874
No 451
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.49 E-value=0.00012 Score=64.22 Aligned_cols=36 Identities=36% Similarity=0.500 Sum_probs=30.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G-----------~~~~~~G~i~~~g~ 64 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTG-----------DLKPQQGEITLDGV 64 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------cCCCCCCEEEECCE
Confidence 4689999999999999999999 44567788888773
No 452
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.48 E-value=0.00013 Score=66.55 Aligned_cols=36 Identities=36% Similarity=0.565 Sum_probs=31.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.+++.
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G-----------~~~p~~G~i~~~g~ 84 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAG-----------IYPPDSGTVTVRGR 84 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCceEEEECCE
Confidence 4689999999999999999999 45678899988873
No 453
>KOG3886|consensus
Probab=97.48 E-value=5e-05 Score=68.40 Aligned_cols=90 Identities=18% Similarity=0.126 Sum_probs=61.1
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHcC-CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCC
Q psy2401 1 MNLKCGLIGLPNVGKSTLFNALTKL-KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSG 79 (363)
Q Consensus 1 m~~~i~lvG~~g~GKSTL~n~Lt~~-~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
|-.||.|+|.+|||||++=..+... .+.-...+|.|++...+++.+-|. -.+++||.-|...+
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn----------------l~LnlwDcGgqe~f 66 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN----------------LVLNLWDCGGQEEF 66 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh----------------heeehhccCCcHHH
Confidence 4578999999999999986666532 222234467788888888877764 56889999886422
Q ss_pred CCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 80 ASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 80 ~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
... .+..+--...++++++++|.|++.
T Consensus 67 men--~~~~q~d~iF~nV~vli~vFDves 93 (295)
T KOG3886|consen 67 MEN--YLSSQEDNIFRNVQVLIYVFDVES 93 (295)
T ss_pred HHH--HHhhcchhhheeheeeeeeeeccc
Confidence 110 000011234688999999999964
No 454
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.48 E-value=0.00011 Score=68.05 Aligned_cols=35 Identities=29% Similarity=0.515 Sum_probs=30.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPD 48 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~ 48 (363)
-.++|+|+||||||||++.|+| ...|..|.+.+++
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G-----------~~~p~~G~i~~~g 60 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAG-----------VLKPDEGDIEIEL 60 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCcCCCCeEEECC
Confidence 4689999999999999999999 5567788888776
No 455
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.48 E-value=0.00011 Score=68.75 Aligned_cols=36 Identities=36% Similarity=0.476 Sum_probs=31.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 40 e~~~i~G~NGsGKSTLl~~l~G-----------l~~p~~G~i~~~g~ 75 (267)
T PRK15112 40 QTLAIIGENGSGKSTLAKMLAG-----------MIEPTSGELLIDDH 75 (267)
T ss_pred CEEEEEcCCCCCHHHHHHHHhC-----------CCCCCCCEEEECCE
Confidence 4689999999999999999999 55678899888873
No 456
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.48 E-value=0.00013 Score=66.22 Aligned_cols=36 Identities=33% Similarity=0.482 Sum_probs=31.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~~~ 62 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITG-----------ILRPTSGEIIFDGH 62 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhC-----------CCCCCceEEEECCE
Confidence 4689999999999999999999 45678888888773
No 457
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.48 E-value=0.00012 Score=69.36 Aligned_cols=36 Identities=28% Similarity=0.496 Sum_probs=31.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||++.|+| -..|+.|.+.++|.
T Consensus 34 e~~~i~G~nGsGKSTLl~~L~G-----------l~~p~~G~i~~~g~ 69 (286)
T PRK13646 34 KYYAIVGQTGSGKSTLIQNINA-----------LLKPTTGTVTVDDI 69 (286)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCCCCcEEEECCE
Confidence 4689999999999999999999 55678899988874
No 458
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.48 E-value=0.00012 Score=67.23 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=31.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.+++.
T Consensus 30 e~~~l~G~nGsGKSTLl~~i~G-----------~~~~~~G~i~~~g~ 65 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLER-----------FYDPTSGEILLDGV 65 (238)
T ss_pred CEEEEEeCCCCCHHHHHHHHhc-----------cCCCCCCEEEECCE
Confidence 4689999999999999999999 45677888888874
No 459
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.48 E-value=0.00011 Score=68.76 Aligned_cols=36 Identities=36% Similarity=0.466 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||+++|+| ...|..|.+.+++.
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~G-----------l~~~~~G~i~~~g~ 73 (265)
T PRK10575 38 KVTGLIGHNGSGKSTLLKMLGR-----------HQPPSEGEILLDAQ 73 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcC-----------CCCCCCCEEEECCE
Confidence 4689999999999999999999 45677889888874
No 460
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.47 E-value=0.00012 Score=67.28 Aligned_cols=36 Identities=31% Similarity=0.335 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||+++|+| ...|..|.+.+++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G-----------~~~p~~G~i~~~g~ 67 (237)
T PRK11614 32 EIVTLIGANGAGKTTLLGTLCG-----------DPRATSGRIVFDGK 67 (237)
T ss_pred cEEEEECCCCCCHHHHHHHHcC-----------CCCCCCceEEECCE
Confidence 4689999999999999999999 55677888888874
No 461
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.47 E-value=0.00013 Score=67.61 Aligned_cols=36 Identities=33% Similarity=0.393 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||++.|+| ...|..|.+.+++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g~ 62 (252)
T TIGR03005 27 EKVALIGPSGSGKSTILRILMT-----------LEPIDEGQIQVEGE 62 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCceEEEECCE
Confidence 4689999999999999999999 55677888888873
No 462
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.47 E-value=0.00013 Score=63.69 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=30.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPD 48 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~ 48 (363)
-.++|+|++|+|||||++.|+| -..|..|.+.+++
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G-----------~~~~~~G~i~~~g 63 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILG-----------LLRPTSGRVRLDG 63 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHh-----------ccCCCCCeEEECC
Confidence 4689999999999999999999 4457788888877
No 463
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.00012 Score=66.99 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=31.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||+++|+| ...|..|.+.+++.
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G-----------l~~~~~G~v~~~g~ 63 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFR-----------FYDVSSGSILIDGQ 63 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------ccCCCCCEEEECCE
Confidence 4689999999999999999999 45677888888874
No 464
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.00013 Score=68.44 Aligned_cols=36 Identities=31% Similarity=0.514 Sum_probs=31.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.++|.
T Consensus 51 e~~~l~G~nGsGKSTLl~~L~G-----------l~~p~~G~i~i~g~ 86 (269)
T cd03294 51 EIFVIMGLSGSGKSTLLRCINR-----------LIEPTSGKVLIDGQ 86 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCCCCeEEEECCE
Confidence 4689999999999999999999 55677899888874
No 465
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.47 E-value=0.00013 Score=68.36 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=31.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~g~ 73 (265)
T TIGR02769 38 ETVGLLGRSGCGKSTLARLLLG-----------LEKPAQGTVSFRGQ 73 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCCcEEEECCE
Confidence 4689999999999999999999 55678899988873
No 466
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.47 E-value=0.00013 Score=65.83 Aligned_cols=37 Identities=38% Similarity=0.555 Sum_probs=31.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
+-.++|+|+||+|||||+++|+| ...|..|.+.+++.
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g~ 60 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAG-----------FIEPASGSIKVNDQ 60 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc-----------CCCCCCcEEEECCE
Confidence 34689999999999999999999 55677888888874
No 467
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.47 E-value=0.00014 Score=67.91 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=30.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPD 48 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~ 48 (363)
-.++|+|+||||||||++.|+| ...|..|.+.+++
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~G-----------l~~p~~G~i~~~g 73 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAG-----------LETPSAGELLAGT 73 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCCCCeEEEECC
Confidence 4689999999999999999999 4557788887766
No 468
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.46 E-value=0.00013 Score=66.46 Aligned_cols=37 Identities=32% Similarity=0.499 Sum_probs=31.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
+-.++|+|+||||||||+++|+| ...|..|.+.+++.
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g~ 42 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILG-----------LIPPAKGTVKVAGA 42 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC-----------CCCCCCceEEECCc
Confidence 35799999999999999999999 45677888888874
No 469
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.46 E-value=0.00012 Score=67.87 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=30.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPD 48 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~ 48 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~g 64 (253)
T TIGR02323 30 EVLGIVGESGSGKSTLLGCLAG-----------RLAPDHGTATYIM 64 (253)
T ss_pred cEEEEECCCCCCHHHHHHHHhC-----------CCCCCCcEEEEec
Confidence 4689999999999999999999 4557788888876
No 470
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.45 E-value=0.00015 Score=67.47 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=30.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPD 48 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~ 48 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~G-----------l~~p~~G~i~~~~ 65 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLG-----------LVAPDEGVIKRNG 65 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhC-----------CCCCCceEEEECC
Confidence 4689999999999999999999 5567788888765
No 471
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.45 E-value=0.00013 Score=69.12 Aligned_cols=36 Identities=36% Similarity=0.485 Sum_probs=32.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.++|.
T Consensus 33 e~v~i~G~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~g~ 68 (288)
T PRK13643 33 SYTALIGHTGSGKSTLLQHLNG-----------LLQPTEGKVTVGDI 68 (288)
T ss_pred CEEEEECCCCChHHHHHHHHhc-----------CCCCCCcEEEECCE
Confidence 4699999999999999999999 66788899998884
No 472
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.44 E-value=0.00015 Score=65.14 Aligned_cols=36 Identities=31% Similarity=0.298 Sum_probs=30.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeec---ceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIE---PNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~---~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||++.|+| ... |..|.+.+++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G-----------~~~~~~~~~G~i~i~g~ 72 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALAN-----------RTEGNVSVEGDIHYNGI 72 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcc-----------cCCCCCCcceEEEECCE
Confidence 4689999999999999999999 333 67888888773
No 473
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.44 E-value=0.00016 Score=64.70 Aligned_cols=38 Identities=26% Similarity=0.222 Sum_probs=31.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+|.. ...|..|.+.+++.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---------~~~p~~G~i~~~g~ 64 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGHP---------KYEVTEGEILFKGE 64 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---------cCCCCccEEEECCE
Confidence 468999999999999999999820 13578899988874
No 474
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.44 E-value=0.00015 Score=62.94 Aligned_cols=35 Identities=31% Similarity=0.383 Sum_probs=29.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPD 48 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~ 48 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G-----------~~~~~~G~i~~~~ 62 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAG-----------LWPWGSGRIGMPE 62 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCCCCceEEECC
Confidence 4689999999999999999999 4456677777765
No 475
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=0.00014 Score=66.56 Aligned_cols=37 Identities=24% Similarity=0.472 Sum_probs=31.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G-----------l~~~~~G~i~~~g~~ 62 (232)
T PRK10771 26 ERVAILGPSGAGKSTLLNLIAG-----------FLTPASGSLTLNGQD 62 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCCceEEECCee
Confidence 4689999999999999999999 456778888888743
No 476
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.44 E-value=0.00013 Score=64.50 Aligned_cols=36 Identities=28% Similarity=0.508 Sum_probs=32.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
-++++|++|||||||+|.+.| -+.|..|.+..++.+
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AG-----------f~~P~~G~i~l~~r~ 68 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAG-----------FVTPSRGSIQLNGRR 68 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhc-----------CcCcccceEEECCEe
Confidence 478999999999999999999 677999999999854
No 477
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=0.00015 Score=68.24 Aligned_cols=36 Identities=33% Similarity=0.427 Sum_probs=31.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||+++|+| ...|..|.+.++|.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~g~ 67 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNG-----------IYLPQRGRVKVMGR 67 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhc-----------CCCCCceEEEECCE
Confidence 4689999999999999999999 55678899998884
No 478
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.44 E-value=0.00013 Score=70.90 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=32.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.+||+|+||||||||+++|+| ...|+.|.+.++|.
T Consensus 32 ei~gIiG~sGaGKSTLlr~I~g-----------l~~p~~G~I~i~G~ 67 (343)
T TIGR02314 32 QIYGVIGASGAGKSTLIRCVNL-----------LERPTSGSVIVDGQ 67 (343)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCCCceEEEECCE
Confidence 3589999999999999999999 66788999999884
No 479
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.44 E-value=0.00014 Score=67.78 Aligned_cols=36 Identities=28% Similarity=0.511 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~i~G-----------~~~p~~G~i~~~g~ 64 (258)
T PRK13548 29 EVVAILGPNGAGKSTLLRALSG-----------ELSPDSGEVRLNGR 64 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCCCEEEECCE
Confidence 4689999999999999999999 55678899888773
No 480
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=0.00015 Score=70.57 Aligned_cols=36 Identities=31% Similarity=0.427 Sum_probs=31.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||++.|+| ...|..|.+.++|.
T Consensus 32 ei~~iiG~nGsGKSTLlk~L~G-----------l~~p~~G~I~~~g~ 67 (343)
T PRK11153 32 EIFGVIGASGAGKSTLIRCINL-----------LERPTSGRVLVDGQ 67 (343)
T ss_pred CEEEEECCCCCcHHHHHHHHhC-----------CCCCCceEEEECCE
Confidence 4689999999999999999999 56688899999884
No 481
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=0.00015 Score=68.54 Aligned_cols=36 Identities=31% Similarity=0.365 Sum_probs=31.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||+++|+| ...|..|.+.++|.
T Consensus 34 e~~~i~G~nGaGKSTLl~~i~G-----------~~~p~~G~i~~~g~ 69 (279)
T PRK13635 34 EWVAIVGHNGSGKSTLAKLLNG-----------LLLPEAGTITVGGM 69 (279)
T ss_pred CEEEEECCCCCcHHHHHHHHhc-----------CCCCCCcEEEECCE
Confidence 4689999999999999999999 56688999999884
No 482
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.43 E-value=0.00015 Score=68.11 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=31.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||++.|+| ...|..|.+.+++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~g~ 69 (269)
T PRK11831 34 KITAIMGPSGIGKTTLLRLIGG-----------QIAPDHGEILFDGE 69 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCCceEEECCE
Confidence 4689999999999999999999 45577888888874
No 483
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=0.00015 Score=68.31 Aligned_cols=36 Identities=33% Similarity=0.380 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||+++|+| ...|..|.+.++|.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~g~ 64 (274)
T PRK13644 29 EYIGIIGKNGSGKSTLALHLNG-----------LLRPQKGKVLVSGI 64 (274)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCCCCceEEECCE
Confidence 4689999999999999999999 45678899888874
No 484
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.43 E-value=0.00016 Score=63.07 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=30.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G-----------~~~~~~G~i~~~g~ 64 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLR-----------LYDPTSGEILIDGV 64 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHc-----------CCCCCCCEEEECCE
Confidence 4689999999999999999999 44566788888773
No 485
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.43 E-value=0.00015 Score=65.07 Aligned_cols=36 Identities=39% Similarity=0.514 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|++|+|||||+++|+| ...|..|.+.+++.
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~G-----------l~~~~~G~i~~~g~ 70 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFR-----------FLEAEEGKIEIDGI 70 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------ccCCCCCeEEECCE
Confidence 4689999999999999999999 55677888888874
No 486
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.43 E-value=0.00014 Score=69.45 Aligned_cols=35 Identities=29% Similarity=0.494 Sum_probs=31.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
.+||+|+||+|||||++.|+| ...|+.|.+.++|.
T Consensus 30 i~~l~G~NGaGKTTLl~~l~G-----------l~~~~~G~i~i~g~ 64 (301)
T TIGR03522 30 IVGFLGPNGAGKSTTMKIITG-----------YLPPDSGSVQVCGE 64 (301)
T ss_pred EEEEECCCCCCHHHHHHHHhC-----------CCCCCceEEEECCE
Confidence 589999999999999999999 55688899998884
No 487
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.43 E-value=0.00015 Score=66.59 Aligned_cols=38 Identities=24% Similarity=0.255 Sum_probs=30.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+|.. ...|..|.+.+++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~---------~~~~~~G~i~~~g~ 64 (243)
T TIGR01978 27 EIHAIMGPNGSGKSTLSKTIAGHP---------SYEVTSGTILFKGQ 64 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---------CCCCCcceEEECCE
Confidence 468999999999999999999821 02467888888874
No 488
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.42 E-value=0.00014 Score=68.86 Aligned_cols=36 Identities=28% Similarity=0.249 Sum_probs=30.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.+++.
T Consensus 38 e~~~l~G~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~g~ 73 (289)
T PRK13645 38 KVTCVIGTTGSGKSTMIQLTNG-----------LIISETGQTIVGDY 73 (289)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCCCCceEEECCE
Confidence 4689999999999999999999 55677888888773
No 489
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.42 E-value=0.00015 Score=68.37 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=31.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||++.|+| ...|..|.+.++|.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~g~ 69 (279)
T PRK13650 34 EWLSIIGHNGSGKSTTVRLIDG-----------LLEAESGQIIIDGD 69 (279)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCCCCcEEEECCE
Confidence 4689999999999999999999 56788899998884
No 490
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.42 E-value=0.00016 Score=65.81 Aligned_cols=37 Identities=27% Similarity=0.338 Sum_probs=31.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
-.++|+|+||+|||||+++|+| ...|..|.+.+++..
T Consensus 41 e~~~i~G~nGsGKSTLl~~l~G-----------l~~~~~G~i~~~g~~ 77 (226)
T cd03248 41 EVTALVGPSGSGKSTVVALLEN-----------FYQPQGGQVLLDGKP 77 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CcCCCCcEEEECCCc
Confidence 4689999999999999999999 556778898888843
No 491
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.42 E-value=0.00016 Score=64.82 Aligned_cols=35 Identities=31% Similarity=0.457 Sum_probs=30.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPD 48 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~ 48 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++
T Consensus 32 ~~~~i~G~nG~GKSTLl~~i~G-----------~~~~~~G~i~~~g 66 (204)
T cd03250 32 ELVAIVGPVGSGKSSLLSALLG-----------ELEKLSGSVSVPG 66 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------cCCCCCCeEEEcC
Confidence 4689999999999999999999 4457788888776
No 492
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.41 E-value=0.00016 Score=67.16 Aligned_cols=36 Identities=33% Similarity=0.518 Sum_probs=30.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||+++|+| ...|..|.+.+++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~G-----------l~~~~~G~i~~~g~ 64 (255)
T PRK11231 29 KITALIGPNGCGKSTLLKCFAR-----------LLTPQSGTVFLGDK 64 (255)
T ss_pred cEEEEECCCCCCHHHHHHHHhC-----------CcCCCCcEEEECCE
Confidence 3589999999999999999999 44577888888774
No 493
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.41 E-value=0.00015 Score=67.44 Aligned_cols=36 Identities=31% Similarity=0.553 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||+++|+| ...|..|.+.+++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~i~G-----------~~~~~~G~i~~~g~ 63 (256)
T TIGR03873 28 SLTGLLGPNGSGKSTLLRLLAG-----------ALRPDAGTVDLAGV 63 (256)
T ss_pred cEEEEECCCCCCHHHHHHHHcC-----------CCCCCCCEEEECCE
Confidence 4689999999999999999999 55677888888874
No 494
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.41 E-value=0.00019 Score=65.16 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=31.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 32 ~~~~I~G~nGsGKStLl~~l~G-----------~~~~~~G~i~~~g~ 67 (220)
T TIGR02982 32 EIVILTGPSGSGKTTLLTLIGG-----------LRSVQEGSLKVLGQ 67 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCCeEEEECCE
Confidence 4689999999999999999999 55678899988874
No 495
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.41 E-value=0.00016 Score=66.30 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=31.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G-----------l~~~~~G~i~~~g~ 64 (237)
T cd03252 29 EVVGIVGRSGSGKSTLTKLIQR-----------FYVPENGRVLVDGH 64 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CcCCCCCEEEECCe
Confidence 4689999999999999999999 45677888888874
No 496
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.41 E-value=0.00017 Score=67.51 Aligned_cols=35 Identities=31% Similarity=0.546 Sum_probs=30.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPD 48 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~ 48 (363)
-.++|+|+||+|||||+++|+| ...|..|.+.+++
T Consensus 51 e~~~liG~NGsGKSTLlk~L~G-----------l~~p~~G~I~~~g 85 (264)
T PRK13546 51 DVIGLVGINGSGKSTLSNIIGG-----------SLSPTVGKVDRNG 85 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CcCCCceEEEECC
Confidence 4689999999999999999999 5567788888876
No 497
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.00013 Score=73.04 Aligned_cols=76 Identities=22% Similarity=0.316 Sum_probs=52.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeC-CccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVP-DKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~-~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
+-++++||||+|||||++.|... +...|++-..|.+++- ++. ..|+++.+|.- .
T Consensus 70 fIvavvGPpGtGKsTLirSlVrr------~tk~ti~~i~GPiTvvsgK~---------------RRiTflEcp~D---l- 124 (1077)
T COG5192 70 FIVAVVGPPGTGKSTLIRSLVRR------FTKQTIDEIRGPITVVSGKT---------------RRITFLECPSD---L- 124 (1077)
T ss_pred eEEEeecCCCCChhHHHHHHHHH------HHHhhhhccCCceEEeecce---------------eEEEEEeChHH---H-
Confidence 56889999999999999999863 1122555555555442 222 56888888842 1
Q ss_pred cccchhhHHHhhccccCEEEEEEecccC
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCFKD 109 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~~~ 109 (363)
+++.....-||++++++|+.-+
T Consensus 125 ------~~miDvaKIaDLVlLlIdgnfG 146 (1077)
T COG5192 125 ------HQMIDVAKIADLVLLLIDGNFG 146 (1077)
T ss_pred ------HHHHhHHHhhheeEEEeccccC
Confidence 3666677789999999997543
No 498
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.40 E-value=0.00017 Score=67.76 Aligned_cols=36 Identities=28% Similarity=0.399 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.+++.
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~G-----------l~~p~~G~I~~~g~ 71 (271)
T PRK13632 36 EYVAILGHNGSGKSTISKILTG-----------LLKPQSGEIKIDGI 71 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCCCCceEEECCE
Confidence 4689999999999999999999 55678899988874
No 499
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00016 Score=67.64 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=30.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.+++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~i~G-----------~~~~~~G~i~~~g~ 69 (265)
T PRK10253 34 HFTAIIGPNGCGKSTLLRTLSR-----------LMTPAHGHVWLDGE 69 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcC-----------CCCCCCcEEEECCE
Confidence 4689999999999999999999 44577888888874
No 500
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.40 E-value=0.00017 Score=65.36 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=30.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||+|||||++.|+| ...|..|.+.+++.
T Consensus 31 ~~~~i~G~nGsGKSTLl~~i~G-----------~~~~~~G~i~~~g~ 66 (220)
T cd03245 31 EKVAIIGRVGSGKSTLLKLLAG-----------LYKPTSGSVLLDGT 66 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CcCCCCCeEEECCE
Confidence 4689999999999999999999 44567788888774
Done!