Query psy2401
Match_columns 363
No_of_seqs 358 out of 3122
Neff 7.9
Searched_HMMs 29240
Date Sat Aug 17 00:05:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jal_A YCHF protein; nucleotid 100.0 5.1E-91 1.7E-95 673.8 26.6 363 1-363 1-363 (363)
2 2dby_A GTP-binding protein; GD 100.0 2.4E-86 8.4E-91 644.5 29.3 360 3-363 2-368 (368)
3 2ohf_A Protein OLA1, GTP-bindi 100.0 2.8E-86 9.7E-91 646.3 26.8 362 1-363 21-389 (396)
4 1ni3_A YCHF GTPase, YCHF GTP-b 100.0 6.3E-85 2.1E-89 638.2 29.4 362 1-363 19-391 (392)
5 1wxq_A GTP-binding protein; st 100.0 2.2E-57 7.6E-62 446.0 26.4 334 3-362 1-395 (397)
6 4a9a_A Ribosome-interacting GT 100.0 2.6E-54 9E-59 419.4 11.2 290 3-360 73-374 (376)
7 1lnz_A SPO0B-associated GTP-bi 99.8 2.1E-20 7E-25 179.8 8.6 89 4-108 160-248 (342)
8 1udx_A The GTP-binding protein 99.8 1.3E-19 4.6E-24 178.2 11.4 157 3-247 158-315 (416)
9 3iby_A Ferrous iron transport 99.8 7.8E-19 2.7E-23 162.3 9.6 87 3-107 2-94 (256)
10 1wf3_A GTP-binding protein; GT 99.8 1.1E-17 3.8E-22 158.1 17.5 89 3-108 8-98 (301)
11 3iev_A GTP-binding protein ERA 99.8 1.4E-17 4.7E-22 158.0 17.9 89 3-108 11-104 (308)
12 1xzp_A Probable tRNA modificat 99.8 4.9E-18 1.7E-22 170.1 13.3 90 2-108 243-335 (482)
13 3i8s_A Ferrous iron transport 99.7 2.3E-18 7.9E-23 160.6 9.6 89 2-107 3-96 (274)
14 2wji_A Ferrous iron transport 99.7 1.1E-17 3.8E-22 143.3 12.1 87 3-107 4-92 (165)
15 2gj8_A MNME, tRNA modification 99.7 9.4E-18 3.2E-22 145.0 11.2 90 2-108 4-95 (172)
16 3tw8_B RAS-related protein RAB 99.7 2.5E-17 8.5E-22 141.7 13.3 83 3-107 10-92 (181)
17 3tkl_A RAS-related protein RAB 99.7 4.7E-17 1.6E-21 142.3 14.8 153 3-247 17-169 (196)
18 3b1v_A Ferrous iron uptake tra 99.7 8.5E-18 2.9E-22 156.7 9.6 87 2-107 3-91 (272)
19 4dsu_A GTPase KRAS, isoform 2B 99.7 6.1E-17 2.1E-21 140.4 14.1 152 3-247 5-156 (189)
20 2bcg_Y Protein YP2, GTP-bindin 99.7 6.7E-17 2.3E-21 143.0 14.6 154 3-248 9-162 (206)
21 1mky_A Probable GTP-binding pr 99.7 3.1E-17 1.1E-21 162.9 13.7 88 3-107 2-92 (439)
22 3q85_A GTP-binding protein REM 99.7 4.3E-17 1.5E-21 139.0 12.7 149 3-241 3-151 (169)
23 1x3s_A RAS-related protein RAB 99.7 6.3E-17 2.2E-21 141.2 14.0 153 3-247 16-168 (195)
24 3t5g_A GTP-binding protein RHE 99.7 8E-17 2.7E-21 139.2 14.4 153 3-247 7-159 (181)
25 3a1s_A Iron(II) transport prot 99.7 1.5E-17 5.2E-22 153.8 10.4 87 3-107 6-94 (258)
26 1g16_A RAS-related protein SEC 99.7 3.3E-17 1.1E-21 139.5 11.7 83 3-107 4-86 (170)
27 4dhe_A Probable GTP-binding pr 99.7 3.2E-17 1.1E-21 146.8 12.0 88 3-107 30-126 (223)
28 2dyk_A GTP-binding protein; GT 99.7 5.6E-17 1.9E-21 137.0 12.8 88 3-107 2-90 (161)
29 1z08_A RAS-related protein RAB 99.7 7E-17 2.4E-21 137.6 13.4 83 3-107 7-89 (170)
30 2bme_A RAB4A, RAS-related prot 99.7 7.3E-17 2.5E-21 139.9 13.3 153 3-247 11-163 (186)
31 3q72_A GTP-binding protein RAD 99.7 9.3E-17 3.2E-21 136.5 13.7 81 2-107 2-83 (166)
32 1u8z_A RAS-related protein RAL 99.7 5.9E-17 2E-21 137.3 12.4 82 3-107 5-86 (168)
33 2efe_B Small GTP-binding prote 99.7 1.3E-16 4.4E-21 137.5 14.5 161 3-277 13-173 (181)
34 2y8e_A RAB-protein 6, GH09086P 99.7 8E-17 2.7E-21 138.3 13.0 83 3-107 15-97 (179)
35 2g6b_A RAS-related protein RAB 99.7 8.8E-17 3E-21 138.4 13.3 83 3-107 11-94 (180)
36 3bc1_A RAS-related protein RAB 99.7 7.2E-17 2.5E-21 140.3 12.8 92 3-107 12-104 (195)
37 2eki_A DRG 1, developmentally- 99.7 5.5E-18 1.9E-22 129.6 4.7 77 273-361 5-86 (93)
38 1c1y_A RAS-related protein RAP 99.7 1.5E-16 5.2E-21 134.9 14.2 82 3-107 4-85 (167)
39 1z2a_A RAS-related protein RAB 99.7 5.8E-17 2E-21 137.7 11.5 83 3-107 6-88 (168)
40 1ek0_A Protein (GTP-binding pr 99.7 1.5E-16 5E-21 135.3 14.0 83 3-107 4-86 (170)
41 1r2q_A RAS-related protein RAB 99.7 2E-16 6.7E-21 134.5 14.7 83 3-107 7-89 (170)
42 1wms_A RAB-9, RAB9, RAS-relate 99.7 1.5E-16 5E-21 136.7 14.0 83 3-107 8-90 (177)
43 1kao_A RAP2A; GTP-binding prot 99.7 1.3E-16 4.4E-21 135.1 13.2 82 3-107 4-85 (167)
44 2gf9_A RAS-related protein RAB 99.7 1.2E-16 4.1E-21 139.4 13.3 83 3-107 23-105 (189)
45 2a9k_A RAS-related protein RAL 99.7 1.3E-16 4.4E-21 137.9 13.3 151 3-245 19-169 (187)
46 2fg5_A RAB-22B, RAS-related pr 99.7 3.1E-16 1.1E-20 137.4 15.6 159 3-277 24-184 (192)
47 2ew1_A RAS-related protein RAB 99.7 1.1E-16 3.9E-21 142.1 12.9 83 3-107 27-109 (201)
48 1z0f_A RAB14, member RAS oncog 99.7 1.8E-16 6.2E-21 136.0 13.6 83 3-107 16-98 (179)
49 1z06_A RAS-related protein RAB 99.7 8.5E-17 2.9E-21 140.4 11.7 84 3-107 21-104 (189)
50 2ce2_X GTPase HRAS; signaling 99.7 2.8E-16 9.5E-21 132.6 14.5 82 3-107 4-85 (166)
51 2fn4_A P23, RAS-related protei 99.7 2.2E-16 7.4E-21 135.8 14.1 82 3-107 10-91 (181)
52 2bov_A RAla, RAS-related prote 99.7 1.3E-16 4.5E-21 140.6 12.9 153 3-247 15-167 (206)
53 1zbd_A Rabphilin-3A; G protein 99.7 1.4E-16 4.8E-21 140.5 13.0 153 3-247 9-161 (203)
54 2hxs_A RAB-26, RAS-related pro 99.7 7E-17 2.4E-21 138.8 10.8 84 3-107 7-90 (178)
55 2fu5_C RAS-related protein RAB 99.7 3.3E-17 1.1E-21 141.8 8.7 153 3-247 9-161 (183)
56 2oil_A CATX-8, RAS-related pro 99.7 2.7E-16 9.3E-21 137.5 14.4 83 3-107 26-108 (193)
57 1z0j_A RAB-22, RAS-related pro 99.7 3E-16 1E-20 133.5 14.4 83 3-107 7-89 (170)
58 3cbq_A GTP-binding protein REM 99.7 1.1E-16 3.6E-21 141.3 11.8 84 3-107 24-107 (195)
59 3k53_A Ferrous iron transport 99.7 4.8E-17 1.6E-21 151.2 10.0 87 3-107 4-92 (271)
60 3lxw_A GTPase IMAP family memb 99.7 4.5E-16 1.5E-20 142.9 15.9 88 3-107 22-116 (247)
61 3oes_A GTPase rhebl1; small GT 99.7 1.8E-16 6.1E-21 140.0 12.7 154 3-248 25-178 (201)
62 3clv_A RAB5 protein, putative; 99.7 3.4E-16 1.2E-20 136.9 14.4 162 3-244 8-191 (208)
63 1vg8_A RAS-related protein RAB 99.7 4.6E-16 1.6E-20 137.3 15.3 158 3-249 9-167 (207)
64 3gee_A MNME, tRNA modification 99.7 9.2E-17 3.2E-21 160.8 12.1 90 2-108 233-324 (476)
65 3cph_A RAS-related protein SEC 99.7 1.4E-16 4.6E-21 141.3 11.8 83 3-107 21-103 (213)
66 2f7s_A C25KG, RAS-related prot 99.7 7.3E-17 2.5E-21 143.9 10.0 164 3-247 26-189 (217)
67 2nzj_A GTP-binding protein REM 99.7 2.7E-16 9.1E-21 134.6 13.1 83 3-107 5-88 (175)
68 1ega_A Protein (GTP-binding pr 99.7 9.2E-17 3.2E-21 151.8 11.2 88 3-107 9-99 (301)
69 2qu8_A Putative nucleolar GTP- 99.7 6.7E-16 2.3E-20 139.3 16.3 89 3-108 30-120 (228)
70 2o52_A RAS-related protein RAB 99.7 1.2E-16 4.1E-21 141.2 11.1 153 3-247 26-178 (200)
71 2a5j_A RAS-related protein RAB 99.7 1.7E-16 5.8E-21 138.9 11.9 83 3-107 22-104 (191)
72 2lkc_A Translation initiation 99.7 4E-16 1.4E-20 134.1 14.1 82 2-107 8-89 (178)
73 2wjg_A FEOB, ferrous iron tran 99.7 2.8E-17 9.6E-22 142.9 6.6 87 3-107 8-96 (188)
74 2hup_A RAS-related protein RAB 99.7 1.7E-16 5.9E-21 140.4 11.7 153 3-247 30-183 (201)
75 2qtf_A Protein HFLX, GTP-bindi 99.7 2.2E-16 7.6E-21 153.0 13.3 88 4-108 181-269 (364)
76 2il1_A RAB12; G-protein, GDP, 99.7 2E-16 6.8E-21 138.8 11.7 83 3-107 27-109 (192)
77 3dz8_A RAS-related protein RAB 99.7 8.6E-17 2.9E-21 140.8 8.9 83 3-107 24-106 (191)
78 1f6b_A SAR1; gtpases, N-termin 99.7 6.6E-16 2.3E-20 136.4 14.6 78 3-107 26-103 (198)
79 1ky3_A GTP-binding protein YPT 99.7 4.6E-16 1.6E-20 133.8 13.3 84 3-107 9-92 (182)
80 3con_A GTPase NRAS; structural 99.7 5.2E-16 1.8E-20 135.2 13.7 151 3-246 22-172 (190)
81 3cpj_B GTP-binding protein YPT 99.7 2.6E-16 8.9E-21 141.4 12.1 83 3-107 14-96 (223)
82 3kkq_A RAS-related protein M-R 99.7 1.6E-16 5.6E-21 137.4 10.2 82 3-107 19-100 (183)
83 2hjg_A GTP-binding protein ENG 99.7 3.7E-16 1.3E-20 155.0 13.7 184 3-277 176-370 (436)
84 2h57_A ADP-ribosylation factor 99.7 9.5E-16 3.3E-20 133.8 14.3 80 3-107 22-101 (190)
85 1m2o_B GTP-binding protein SAR 99.7 1.2E-15 4.2E-20 133.7 14.9 79 3-108 24-102 (190)
86 4dcu_A GTP-binding protein ENG 99.7 4.9E-16 1.7E-20 155.0 13.9 184 3-277 196-390 (456)
87 1ksh_A ARF-like protein 2; sma 99.7 6.7E-16 2.3E-20 134.0 13.0 79 3-108 19-97 (186)
88 3t1o_A Gliding protein MGLA; G 99.7 8.4E-16 2.9E-20 134.0 13.6 163 3-247 15-182 (198)
89 2e87_A Hypothetical protein PH 99.7 2.3E-15 7.7E-20 145.5 17.4 158 3-248 168-327 (357)
90 4dkx_A RAS-related protein RAB 99.7 7.9E-16 2.7E-20 138.6 13.1 153 3-247 14-166 (216)
91 2p5s_A RAS and EF-hand domain 99.7 5E-16 1.7E-20 136.9 11.6 83 3-107 29-111 (199)
92 2atv_A RERG, RAS-like estrogen 99.7 8.5E-16 2.9E-20 134.9 13.0 81 3-107 29-109 (196)
93 2erx_A GTP-binding protein DI- 99.7 8.8E-16 3E-20 130.7 12.7 82 3-107 4-85 (172)
94 4bas_A ADP-ribosylation factor 99.7 1.1E-15 3.8E-20 133.8 13.6 80 3-108 18-98 (199)
95 3geh_A MNME, tRNA modification 99.6 1.1E-16 3.8E-21 159.6 7.6 89 2-107 224-314 (462)
96 1zj6_A ADP-ribosylation factor 99.6 1.4E-15 4.7E-20 132.5 13.6 79 3-108 17-95 (187)
97 1r8s_A ADP-ribosylation factor 99.6 1.6E-15 5.5E-20 128.5 13.6 78 3-107 1-78 (164)
98 2h17_A ADP-ribosylation factor 99.6 1.3E-15 4.4E-20 132.1 13.1 78 3-108 22-100 (181)
99 2hjg_A GTP-binding protein ENG 99.6 1.6E-16 5.4E-21 157.7 7.8 91 1-108 1-94 (436)
100 2yc2_C IFT27, small RAB-relate 99.6 9.6E-17 3.3E-21 141.5 5.4 163 3-256 21-191 (208)
101 1svi_A GTP-binding protein YSX 99.6 1.9E-15 6.5E-20 132.0 13.6 85 3-107 24-116 (195)
102 3reg_A RHO-like small GTPase; 99.6 2.3E-15 7.9E-20 131.8 14.0 82 3-107 24-105 (194)
103 3t5d_A Septin-7; GTP-binding p 99.6 1.4E-15 5E-20 141.4 13.4 63 3-80 9-79 (274)
104 3ihw_A Centg3; RAS, centaurin, 99.6 1.7E-15 5.9E-20 132.2 13.1 76 3-107 21-96 (184)
105 4gzl_A RAS-related C3 botulinu 99.6 2.2E-15 7.6E-20 133.5 13.9 82 3-107 31-112 (204)
106 1zd9_A ADP-ribosylation factor 99.6 2.1E-15 7.2E-20 131.6 13.5 79 3-107 23-101 (188)
107 3r7w_A Gtpase1, GTP-binding pr 99.6 2.8E-15 9.5E-20 142.0 15.3 89 2-108 3-92 (307)
108 3pqc_A Probable GTP-binding pr 99.6 2.3E-15 7.8E-20 131.1 13.6 85 3-107 24-115 (195)
109 3c5c_A RAS-like protein 12; GD 99.6 2E-15 6.9E-20 131.9 13.2 81 3-107 22-102 (187)
110 3l0i_B RAS-related protein RAB 99.6 3.5E-17 1.2E-21 144.4 1.6 83 3-107 34-116 (199)
111 1dar_A EF-G, elongation factor 99.6 1.8E-15 6.2E-20 158.0 14.8 226 3-285 13-261 (691)
112 1mh1_A RAC1; GTP-binding, GTPa 99.6 2.4E-15 8.4E-20 129.9 13.1 82 3-107 6-87 (186)
113 2xex_A Elongation factor G; GT 99.6 1.5E-15 5.1E-20 158.7 14.0 226 3-285 11-259 (693)
114 2q3h_A RAS homolog gene family 99.6 2.7E-15 9.1E-20 132.0 13.4 82 3-107 21-102 (201)
115 2iwr_A Centaurin gamma 1; ANK 99.6 2.1E-15 7.2E-20 129.8 12.3 76 3-107 8-83 (178)
116 1upt_A ARL1, ADP-ribosylation 99.6 4.9E-15 1.7E-19 126.2 14.5 79 3-108 8-86 (171)
117 1moz_A ARL1, ADP-ribosylation 99.6 1.6E-15 5.6E-20 131.0 11.6 79 3-108 19-97 (183)
118 2gf0_A GTP-binding protein DI- 99.6 2.8E-15 9.7E-20 131.2 13.0 81 3-107 9-90 (199)
119 2b6h_A ADP-ribosylation factor 99.6 3.5E-15 1.2E-19 131.0 13.4 78 3-107 30-107 (192)
120 2atx_A Small GTP binding prote 99.6 4.8E-15 1.6E-19 129.6 14.2 82 3-107 19-100 (194)
121 1mky_A Probable GTP-binding pr 99.6 3.1E-15 1.1E-19 148.5 14.6 182 3-275 181-374 (439)
122 3lxx_A GTPase IMAP family memb 99.6 4E-15 1.4E-19 135.3 14.1 88 3-107 30-123 (239)
123 2j0v_A RAC-like GTP-binding pr 99.6 3.4E-15 1.1E-19 132.6 13.1 82 3-107 10-91 (212)
124 3qq5_A Small GTP-binding prote 99.6 3.4E-16 1.2E-20 154.3 6.4 88 3-106 35-123 (423)
125 3bwd_D RAC-like GTP-binding pr 99.6 1.4E-15 4.7E-20 131.2 9.5 82 3-107 9-90 (182)
126 2g3y_A GTP-binding protein GEM 99.6 3.4E-15 1.2E-19 133.9 11.3 84 3-107 38-122 (211)
127 1fzq_A ADP-ribosylation factor 99.6 6.6E-15 2.2E-19 127.9 12.7 77 3-107 17-94 (181)
128 2xtp_A GTPase IMAP family memb 99.6 1.9E-14 6.6E-19 132.4 16.4 88 3-107 23-116 (260)
129 2x77_A ADP-ribosylation factor 99.6 7.3E-15 2.5E-19 127.9 12.7 79 3-108 23-101 (189)
130 3q3j_B RHO-related GTP-binding 99.6 1.2E-14 4.2E-19 129.9 14.5 82 3-107 28-109 (214)
131 4djt_A GTP-binding nuclear pro 99.6 2.9E-15 1E-19 133.6 10.2 84 3-107 12-95 (218)
132 2fv8_A H6, RHO-related GTP-bin 99.6 1.3E-14 4.5E-19 128.6 14.4 82 3-107 26-107 (207)
133 2gco_A H9, RHO-related GTP-bin 99.6 1.5E-14 5.1E-19 127.7 14.6 82 3-107 26-107 (201)
134 2j1l_A RHO-related GTP-binding 99.6 7.7E-15 2.6E-19 131.0 12.7 82 3-107 35-116 (214)
135 1m7b_A RND3/RHOE small GTP-bin 99.6 8.8E-15 3E-19 127.1 12.7 82 3-107 8-89 (184)
136 2cjw_A GTP-binding protein GEM 99.6 8E-15 2.7E-19 128.9 12.4 162 3-254 7-169 (192)
137 4dcu_A GTP-binding protein ENG 99.6 1.5E-15 5.1E-20 151.5 8.6 88 3-107 24-113 (456)
138 3lvq_E ARF-GAP with SH3 domain 99.6 1.5E-14 5E-19 145.6 15.0 79 3-108 323-401 (497)
139 2rdo_7 EF-G, elongation factor 99.6 2E-14 7E-19 150.3 16.4 233 3-285 11-267 (704)
140 1gwn_A RHO-related GTP-binding 99.6 1.6E-14 5.5E-19 128.4 12.7 82 3-107 29-110 (205)
141 3gj0_A GTP-binding nuclear pro 99.6 1.4E-15 4.9E-20 136.1 5.2 81 3-107 16-98 (221)
142 2f9l_A RAB11B, member RAS onco 99.6 2.3E-14 8E-19 126.2 12.9 83 3-107 6-88 (199)
143 2cxx_A Probable GTP-binding pr 99.6 4.8E-14 1.7E-18 122.2 14.5 83 3-106 2-92 (190)
144 3p26_A Elongation factor 1 alp 99.6 4.5E-15 1.5E-19 149.1 8.1 82 3-108 34-146 (483)
145 1oix_A RAS-related protein RAB 99.5 5.2E-14 1.8E-18 123.5 13.8 83 3-107 30-112 (191)
146 3llu_A RAS-related GTP-binding 99.5 6.4E-14 2.2E-18 123.1 14.0 83 3-107 21-106 (196)
147 4fn5_A EF-G 1, elongation fact 99.5 5.5E-14 1.9E-18 147.3 15.5 233 3-285 14-270 (709)
148 2wkq_A NPH1-1, RAS-related C3 99.5 7E-14 2.4E-18 132.3 13.8 83 2-107 155-237 (332)
149 3o47_A ADP-ribosylation factor 99.5 3.8E-14 1.3E-18 135.4 11.8 79 3-108 166-244 (329)
150 3izq_1 HBS1P, elongation facto 99.5 1.4E-14 4.9E-19 149.1 8.5 82 3-108 168-280 (611)
151 1wb1_A Translation elongation 99.5 3.4E-14 1.2E-18 142.6 10.8 82 3-108 20-108 (482)
152 3th5_A RAS-related C3 botulinu 99.3 1.2E-15 4.1E-20 134.8 0.0 83 3-108 31-113 (204)
153 3j2k_7 ERF3, eukaryotic polype 99.5 4.3E-14 1.5E-18 140.2 11.2 82 3-108 18-130 (439)
154 2zej_A Dardarin, leucine-rich 99.5 1.2E-13 4E-18 120.2 11.4 88 2-107 2-90 (184)
155 3tr5_A RF-3, peptide chain rel 99.5 8.8E-14 3E-18 140.9 12.0 82 3-108 14-117 (528)
156 3vqt_A RF-3, peptide chain rel 99.5 8.3E-14 2.9E-18 141.7 11.0 157 3-205 32-212 (548)
157 1kk1_A EIF2gamma; initiation o 99.5 2.3E-13 7.8E-18 133.8 13.4 99 3-108 11-118 (410)
158 2fh5_B SR-beta, signal recogni 99.5 3.3E-13 1.1E-17 119.8 12.7 83 2-107 7-89 (214)
159 1s0u_A EIF-2-gamma, translatio 99.5 4.1E-13 1.4E-17 131.9 14.2 98 3-108 9-116 (408)
160 3izy_P Translation initiation 99.5 5.1E-15 1.8E-19 149.7 0.3 84 2-108 4-87 (537)
161 1zun_B Sulfate adenylate trans 99.5 2.1E-13 7.3E-18 135.0 11.4 82 3-108 25-139 (434)
162 3dpu_A RAB family protein; roc 99.5 4.4E-14 1.5E-18 143.5 6.5 153 3-249 42-200 (535)
163 3sjy_A Translation initiation 99.5 2.9E-13 9.8E-18 132.8 11.8 94 3-108 9-110 (403)
164 3def_A T7I23.11 protein; chlor 99.4 7.1E-13 2.4E-17 122.3 13.6 88 3-107 37-127 (262)
165 1jwy_B Dynamin A GTPase domain 99.4 3.8E-13 1.3E-17 126.9 11.8 42 66-107 131-178 (315)
166 2elf_A Protein translation elo 99.4 3.1E-13 1.1E-17 131.1 11.4 72 4-108 23-94 (370)
167 2dy1_A Elongation factor G; tr 99.4 7.4E-13 2.5E-17 137.8 14.2 224 3-285 10-253 (665)
168 1jny_A EF-1-alpha, elongation 99.4 9.7E-14 3.3E-18 137.6 6.4 82 3-108 7-119 (435)
169 2c78_A Elongation factor TU-A; 99.4 7.7E-13 2.6E-17 129.8 12.5 82 3-108 12-110 (405)
170 2h5e_A Peptide chain release f 99.4 6.3E-13 2.1E-17 134.7 10.8 82 3-108 14-117 (529)
171 1h65_A Chloroplast outer envel 99.4 1.8E-12 6E-17 120.2 12.4 88 3-107 40-130 (270)
172 3c5h_A Glucocorticoid receptor 99.4 4.9E-13 1.7E-17 123.0 7.8 41 198-240 197-238 (255)
173 3cb4_D GTP-binding protein LEP 99.4 1.3E-12 4.3E-17 134.0 11.4 87 3-108 5-106 (599)
174 2ywe_A GTP-binding protein LEP 99.4 2E-12 6.9E-17 132.3 12.5 87 3-108 7-108 (600)
175 1d2e_A Elongation factor TU (E 99.4 3.1E-12 1.1E-16 125.2 13.3 82 3-108 4-101 (397)
176 2aka_B Dynamin-1; fusion prote 99.4 5.5E-13 1.9E-17 124.7 6.9 25 3-27 27-51 (299)
177 1f60_A Elongation factor EEF1A 99.4 3.4E-13 1.2E-17 134.5 5.7 81 3-107 8-119 (458)
178 2qag_A Septin-2, protein NEDD5 99.4 2E-12 6.8E-17 125.1 10.8 44 198-242 173-219 (361)
179 3mca_A HBS1, elongation factor 99.4 1.2E-13 4.3E-18 141.7 2.4 82 3-108 178-290 (592)
180 1zo1_I IF2, translation initia 99.4 3.9E-14 1.3E-18 142.2 -1.8 83 2-108 4-86 (501)
181 3j25_A Tetracycline resistance 99.3 8.5E-13 2.9E-17 136.7 7.9 197 3-285 3-218 (638)
182 3t34_A Dynamin-related protein 99.3 6.8E-12 2.3E-16 121.1 11.8 105 3-107 35-183 (360)
183 1g7s_A Translation initiation 99.3 1.1E-11 3.7E-16 127.1 13.8 97 2-108 5-105 (594)
184 2j69_A Bacterial dynamin-like 99.3 4.2E-12 1.4E-16 132.7 10.9 101 2-107 69-211 (695)
185 1nrj_B SR-beta, signal recogni 99.3 2.1E-12 7.1E-17 114.9 6.9 77 3-107 13-93 (218)
186 1pui_A ENGB, probable GTP-bind 99.3 8.8E-12 3E-16 110.0 10.8 86 2-107 26-119 (210)
187 1r5b_A Eukaryotic peptide chai 99.3 1.5E-12 5.1E-17 130.1 6.4 82 3-108 44-156 (467)
188 2ged_A SR-beta, signal recogni 99.3 8.7E-12 3E-16 108.5 9.7 78 3-107 49-129 (193)
189 1n0u_A EF-2, elongation factor 99.2 5.3E-11 1.8E-15 126.8 14.9 99 3-109 20-134 (842)
190 3avx_A Elongation factor TS, e 99.2 3.8E-11 1.3E-15 129.4 13.1 82 3-108 297-394 (1289)
191 3p32_A Probable GTPase RV1496/ 99.2 8.6E-11 3E-15 113.2 11.8 22 3-24 80-101 (355)
192 2www_A Methylmalonic aciduria 99.2 2.2E-11 7.7E-16 117.1 7.4 22 3-24 75-96 (349)
193 2x2e_A Dynamin-1; nitration, h 99.2 3.5E-11 1.2E-15 115.8 7.5 25 3-27 32-56 (353)
194 3r7w_B Gtpase2, GTP-binding pr 99.2 1.2E-10 4E-15 110.6 10.7 82 4-107 1-83 (331)
195 2qpt_A EH domain-containing pr 99.1 4E-10 1.4E-14 114.6 14.4 103 3-107 66-199 (550)
196 2qnr_A Septin-2, protein NEDD5 99.1 4.3E-10 1.5E-14 105.9 12.2 48 198-247 154-204 (301)
197 3zvr_A Dynamin-1; hydrolase, D 99.1 9.7E-11 3.3E-15 122.4 7.2 41 3-43 52-92 (772)
198 2p67_A LAO/AO transport system 99.1 1E-09 3.4E-14 105.2 13.0 22 3-24 57-78 (341)
199 3h2y_A GTPase family protein; 99.1 8.9E-11 3E-15 113.8 5.1 84 3-106 161-254 (368)
200 3ec1_A YQEH GTPase; atnos1, at 99.0 1.1E-10 3.8E-15 113.1 4.6 85 3-107 163-256 (369)
201 2qag_C Septin-7; cell cycle, c 99.0 1.8E-09 6E-14 106.2 11.0 45 198-243 166-213 (418)
202 2qm8_A GTPase/ATPase; G protei 98.9 3.1E-09 1.1E-13 101.7 10.0 22 3-24 56-77 (337)
203 3sop_A Neuronal-specific septi 98.9 3.3E-09 1.1E-13 98.3 9.6 67 2-79 2-73 (270)
204 2wsm_A Hydrogenase expression/ 98.9 2.3E-09 7.7E-14 95.4 7.3 23 3-25 31-53 (221)
205 2qag_B Septin-6, protein NEDD5 98.9 1.2E-08 4.1E-13 100.1 12.1 23 4-26 44-66 (427)
206 1puj_A YLQF, conserved hypothe 98.8 3.1E-09 1E-13 99.2 5.9 59 3-81 121-180 (282)
207 1yrb_A ATP(GTP)binding protein 98.7 5.4E-08 1.9E-12 88.7 11.7 40 66-107 109-148 (262)
208 3cnl_A YLQF, putative uncharac 98.6 2.2E-08 7.4E-13 92.4 4.3 58 3-80 100-158 (262)
209 1f5n_A Interferon-induced guan 98.6 8.8E-08 3E-12 97.7 8.8 66 3-79 39-104 (592)
210 2hf9_A Probable hydrogenase ni 98.6 1.1E-07 3.8E-12 84.6 8.5 23 3-25 39-61 (226)
211 1tq4_A IIGP1, interferon-induc 98.6 2.1E-07 7E-12 91.2 10.1 22 4-25 71-92 (413)
212 3hvz_A Uncharacterized protein 98.5 1.9E-07 6.4E-12 69.7 6.0 60 279-360 7-66 (78)
213 3tif_A Uncharacterized ABC tra 97.9 8.7E-06 3E-10 73.6 5.1 36 3-49 32-67 (235)
214 3q5d_A Atlastin-1; G protein, 97.9 1.3E-05 4.3E-10 79.2 6.4 70 4-79 69-153 (447)
215 2pcj_A ABC transporter, lipopr 97.9 1.2E-05 4.1E-10 72.1 5.1 36 3-49 31-66 (224)
216 2onk_A Molybdate/tungstate ABC 97.8 1.1E-05 3.9E-10 73.1 4.8 36 4-50 26-61 (240)
217 4g1u_C Hemin import ATP-bindin 97.8 1.2E-05 4.2E-10 74.0 4.5 37 3-50 38-74 (266)
218 2j37_W Signal recognition part 97.8 1.3E-05 4.4E-10 80.4 4.8 21 3-23 102-122 (504)
219 1g6h_A High-affinity branched- 97.8 1.6E-05 5.4E-10 72.8 4.9 36 3-49 34-69 (257)
220 1b0u_A Histidine permease; ABC 97.8 1.6E-05 5.6E-10 73.0 5.0 36 3-49 33-68 (262)
221 1t9h_A YLOQ, probable GTPase E 97.8 6.5E-06 2.2E-10 77.4 2.3 23 3-25 174-196 (307)
222 1sgw_A Putative ABC transporte 97.8 1.5E-05 5.3E-10 71.0 4.6 36 3-49 36-71 (214)
223 1ji0_A ABC transporter; ATP bi 97.8 1.7E-05 5.9E-10 71.8 4.9 36 3-49 33-68 (240)
224 3gfo_A Cobalt import ATP-bindi 97.8 1.7E-05 5.9E-10 73.4 5.0 36 3-49 35-70 (275)
225 2pze_A Cystic fibrosis transme 97.8 1.8E-05 6.3E-10 71.1 5.0 35 3-48 35-69 (229)
226 2ff7_A Alpha-hemolysin translo 97.8 1.8E-05 6.3E-10 72.0 4.9 37 3-50 36-72 (247)
227 2olj_A Amino acid ABC transpor 97.8 1.9E-05 6.5E-10 72.6 5.0 36 3-49 51-86 (263)
228 2cbz_A Multidrug resistance-as 97.8 1.8E-05 6.3E-10 71.5 4.7 35 3-48 32-66 (237)
229 1u0l_A Probable GTPase ENGC; p 97.8 1.4E-05 4.9E-10 74.8 4.0 61 3-78 170-233 (301)
230 1vpl_A ABC transporter, ATP-bi 97.8 2.1E-05 7.2E-10 72.0 5.0 36 3-49 42-77 (256)
231 2ihy_A ABC transporter, ATP-bi 97.7 2.1E-05 7.3E-10 72.9 5.0 36 3-49 48-83 (279)
232 2yz2_A Putative ABC transporte 97.7 2.5E-05 8.5E-10 71.9 4.9 36 3-49 34-69 (266)
233 2ixe_A Antigen peptide transpo 97.7 2.6E-05 8.9E-10 72.0 4.9 37 3-50 46-82 (271)
234 3nh6_A ATP-binding cassette SU 97.7 2.1E-05 7.1E-10 73.9 4.3 38 3-51 81-118 (306)
235 2qi9_C Vitamin B12 import ATP- 97.7 2.8E-05 9.7E-10 70.9 5.0 36 3-50 27-62 (249)
236 3tui_C Methionine import ATP-b 97.7 2.7E-05 9.3E-10 74.8 4.9 36 3-49 55-90 (366)
237 1cip_A Protein (guanine nucleo 97.7 8.4E-05 2.9E-09 71.2 8.3 36 66-108 193-228 (353)
238 1mv5_A LMRA, multidrug resista 97.7 1.8E-05 6.3E-10 71.7 3.5 37 3-50 29-65 (243)
239 2d2e_A SUFC protein; ABC-ATPas 97.7 3.3E-05 1.1E-09 70.4 5.0 38 3-49 30-67 (250)
240 2rcn_A Probable GTPase ENGC; Y 97.6 2.6E-05 8.9E-10 74.8 3.9 23 3-25 216-238 (358)
241 2pjz_A Hypothetical protein ST 97.6 4.3E-05 1.5E-09 70.3 5.0 35 3-49 31-65 (263)
242 2bbs_A Cystic fibrosis transme 97.6 4.3E-05 1.5E-09 71.2 4.8 35 3-48 65-99 (290)
243 3rlf_A Maltose/maltodextrin im 97.6 4.7E-05 1.6E-09 73.6 5.0 37 3-50 30-66 (381)
244 2yyz_A Sugar ABC transporter, 97.6 4.7E-05 1.6E-09 73.1 5.0 37 3-50 30-66 (359)
245 2zu0_C Probable ATP-dependent 97.6 5.2E-05 1.8E-09 69.8 5.0 38 3-49 47-84 (267)
246 3szr_A Interferon-induced GTP- 97.6 5E-05 1.7E-09 78.0 5.4 22 4-25 47-68 (608)
247 3fvq_A Fe(3+) IONS import ATP- 97.6 4.6E-05 1.6E-09 73.1 4.8 37 3-50 31-67 (359)
248 3dm5_A SRP54, signal recogniti 97.6 0.00022 7.6E-09 70.1 9.7 22 3-24 101-122 (443)
249 2it1_A 362AA long hypothetical 97.6 5.3E-05 1.8E-09 72.8 5.0 37 3-50 30-66 (362)
250 1v43_A Sugar-binding transport 97.5 6.7E-05 2.3E-09 72.4 5.3 38 3-51 38-75 (372)
251 1z47_A CYSA, putative ABC-tran 97.5 5.8E-05 2E-09 72.3 4.7 37 3-50 42-78 (355)
252 2ghi_A Transport protein; mult 97.5 6.7E-05 2.3E-09 68.7 4.9 36 3-50 47-82 (260)
253 2v3c_C SRP54, signal recogniti 97.5 4.9E-05 1.7E-09 74.8 4.0 22 3-24 100-121 (432)
254 1g29_1 MALK, maltose transport 97.5 6.7E-05 2.3E-09 72.4 4.7 36 3-49 30-65 (372)
255 1ye8_A Protein THEP1, hypothet 97.5 4.5E-05 1.5E-09 65.8 3.1 23 3-25 1-23 (178)
256 3d31_A Sulfate/molybdate ABC t 97.5 5.4E-05 1.9E-09 72.4 4.0 36 3-49 27-62 (348)
257 3ney_A 55 kDa erythrocyte memb 97.4 3.6E-05 1.2E-09 67.7 1.9 41 3-43 20-62 (197)
258 1htw_A HI0065; nucleotide-bind 97.4 3.3E-05 1.1E-09 65.5 1.5 34 4-49 35-68 (158)
259 2nq2_C Hypothetical ABC transp 97.4 8.9E-05 3.1E-09 67.7 4.5 32 3-45 32-63 (253)
260 1oxx_K GLCV, glucose, ABC tran 97.4 6.6E-05 2.3E-09 71.9 3.6 36 3-49 32-67 (353)
261 1zcb_A G alpha I/13; GTP-bindi 97.4 0.00026 9E-09 68.0 7.7 36 66-108 201-236 (362)
262 2yv5_A YJEQ protein; hydrolase 97.4 0.00012 4E-09 68.6 5.0 22 3-25 166-187 (302)
263 1kgd_A CASK, peripheral plasma 97.4 8.9E-05 3E-09 63.7 3.7 41 2-42 5-47 (180)
264 3e70_C DPA, signal recognition 97.4 0.00017 5.7E-09 68.4 5.8 22 3-24 130-151 (328)
265 2yhs_A FTSY, cell division pro 97.4 0.0001 3.6E-09 73.3 4.1 22 3-24 294-315 (503)
266 1u0l_A Probable GTPase ENGC; p 97.3 0.00017 5.9E-09 67.4 4.9 79 198-278 114-194 (301)
267 3ohm_A Guanine nucleotide-bind 97.3 0.00025 8.7E-09 67.1 6.1 36 66-108 167-202 (327)
268 3b60_A Lipid A export ATP-bind 97.3 0.00018 6.1E-09 73.5 5.1 38 3-51 370-407 (582)
269 2f1r_A Molybdopterin-guanine d 97.3 6.8E-05 2.3E-09 64.3 1.7 37 1-48 1-40 (171)
270 1puj_A YLQF, conserved hypothe 97.3 0.0005 1.7E-08 63.7 7.2 48 198-247 49-96 (282)
271 2yl4_A ATP-binding cassette SU 97.2 0.00016 5.5E-09 74.0 4.2 38 3-51 371-408 (595)
272 3b5x_A Lipid A export ATP-bind 97.2 0.00019 6.5E-09 73.3 4.4 37 3-50 370-406 (582)
273 3qf4_B Uncharacterized ABC tra 97.2 0.00021 7.1E-09 73.2 4.4 38 3-51 382-419 (598)
274 1kag_A SKI, shikimate kinase I 97.2 0.00016 5.6E-09 61.1 3.0 24 1-24 3-26 (173)
275 4a82_A Cystic fibrosis transme 97.2 0.00017 5.7E-09 73.6 3.7 38 3-51 368-405 (578)
276 3gd7_A Fusion complex of cysti 97.2 0.00033 1.1E-08 67.9 5.6 37 3-51 48-84 (390)
277 1zp6_A Hypothetical protein AT 97.2 0.00026 9E-09 60.8 4.4 22 3-24 10-31 (191)
278 1lvg_A Guanylate kinase, GMP k 97.2 0.00016 5.5E-09 63.2 2.8 23 3-25 5-27 (198)
279 1azs_C GS-alpha; complex (lyas 97.2 0.0012 4.1E-08 64.1 9.2 36 66-108 217-252 (402)
280 3qf4_A ABC transporter, ATP-bi 97.2 0.00025 8.5E-09 72.5 4.5 38 3-51 370-407 (587)
281 3c8u_A Fructokinase; YP_612366 97.2 0.00018 6.2E-09 63.2 3.0 22 3-24 23-44 (208)
282 3tr0_A Guanylate kinase, GMP k 97.1 0.0002 6.9E-09 62.2 3.2 23 3-25 8-30 (205)
283 1znw_A Guanylate kinase, GMP k 97.1 0.0002 6.8E-09 62.8 3.2 23 3-25 21-43 (207)
284 2pt7_A CAG-ALFA; ATPase, prote 97.1 0.0002 6.7E-09 68.0 3.3 36 3-49 172-207 (330)
285 2bdt_A BH3686; alpha-beta prot 97.1 0.0002 6.9E-09 61.6 2.7 24 1-24 1-24 (189)
286 2gza_A Type IV secretion syste 97.1 0.00028 9.6E-09 67.7 3.7 35 3-48 176-210 (361)
287 2xtz_A Guanine nucleotide-bind 97.0 0.0012 4.1E-08 63.1 7.8 36 66-108 183-218 (354)
288 3a00_A Guanylate kinase, GMP k 97.0 0.00028 9.5E-09 60.8 2.7 23 3-25 2-24 (186)
289 1s96_A Guanylate kinase, GMP k 97.0 0.00036 1.2E-08 62.2 3.4 23 3-25 17-39 (219)
290 1z6g_A Guanylate kinase; struc 97.0 0.00032 1.1E-08 62.2 2.8 22 3-24 24-45 (218)
291 3b85_A Phosphate starvation-in 97.0 0.00028 9.7E-09 62.4 2.4 22 3-24 23-44 (208)
292 2eyu_A Twitching motility prot 97.0 0.00022 7.7E-09 65.3 1.8 37 3-50 26-63 (261)
293 3euj_A Chromosome partition pr 96.9 0.00019 6.6E-09 71.4 1.2 37 4-51 31-67 (483)
294 1jjv_A Dephospho-COA kinase; P 96.9 0.00044 1.5E-08 60.3 3.4 24 1-24 1-24 (206)
295 3asz_A Uridine kinase; cytidin 96.9 0.00041 1.4E-08 60.6 3.1 23 3-25 7-29 (211)
296 3tau_A Guanylate kinase, GMP k 96.9 0.00056 1.9E-08 60.1 3.8 39 3-41 9-49 (208)
297 2obl_A ESCN; ATPase, hydrolase 96.9 0.00068 2.3E-08 64.7 4.6 38 2-50 71-108 (347)
298 1cke_A CK, MSSA, protein (cyti 96.9 0.00055 1.9E-08 60.4 3.4 23 2-24 5-27 (227)
299 4gp7_A Metallophosphoesterase; 96.8 0.00046 1.6E-08 58.7 2.8 21 4-24 11-31 (171)
300 3cnl_A YLQF, putative uncharac 96.8 0.0015 5.2E-08 59.7 6.4 69 199-275 46-121 (262)
301 3ozx_A RNAse L inhibitor; ATP 96.8 0.00058 2E-08 69.0 3.9 35 3-48 295-329 (538)
302 1nij_A Hypothetical protein YJ 96.8 0.00022 7.5E-09 67.2 0.7 22 4-25 6-27 (318)
303 2i3b_A HCR-ntpase, human cance 96.8 0.00049 1.7E-08 59.9 2.8 23 3-25 2-24 (189)
304 2oap_1 GSPE-2, type II secreti 96.8 0.0006 2E-08 68.5 3.7 36 3-49 261-296 (511)
305 2if2_A Dephospho-COA kinase; a 96.8 0.00063 2.2E-08 59.1 3.4 23 2-24 1-23 (204)
306 3lnc_A Guanylate kinase, GMP k 96.8 0.00047 1.6E-08 61.4 2.3 23 3-25 28-51 (231)
307 1sq5_A Pantothenate kinase; P- 96.8 0.00052 1.8E-08 64.2 2.7 22 3-24 81-102 (308)
308 4f4c_A Multidrug resistance pr 96.8 0.00049 1.7E-08 76.7 2.8 39 2-51 1105-1143(1321)
309 3kl4_A SRP54, signal recogniti 96.8 0.0011 3.9E-08 65.0 5.1 22 3-24 98-119 (433)
310 2iw3_A Elongation factor 3A; a 96.8 0.00064 2.2E-08 72.9 3.6 35 3-48 700-734 (986)
311 2yv5_A YJEQ protein; hydrolase 96.7 0.0012 4E-08 61.7 4.9 78 198-278 109-189 (302)
312 1ly1_A Polynucleotide kinase; 96.7 0.00078 2.7E-08 56.9 3.4 24 1-24 1-24 (181)
313 2bbw_A Adenylate kinase 4, AK4 96.7 0.00082 2.8E-08 60.4 3.6 21 3-23 28-48 (246)
314 2j41_A Guanylate kinase; GMP, 96.7 0.00075 2.6E-08 58.5 3.2 24 2-25 6-29 (207)
315 1rj9_A FTSY, signal recognitio 96.7 0.00057 2E-08 64.0 2.3 22 3-24 103-124 (304)
316 2v9p_A Replication protein E1; 96.7 0.00079 2.7E-08 63.0 3.1 22 3-24 127-148 (305)
317 4eun_A Thermoresistant glucoki 96.7 0.0009 3.1E-08 58.2 3.2 22 3-24 30-51 (200)
318 2dpy_A FLII, flagellum-specifi 96.7 0.0012 4.1E-08 65.0 4.4 37 3-50 158-194 (438)
319 1j8m_F SRP54, signal recogniti 96.6 0.00072 2.4E-08 63.1 2.5 22 3-24 99-120 (297)
320 3b9q_A Chloroplast SRP recepto 96.6 0.00055 1.9E-08 64.0 1.7 22 3-24 101-122 (302)
321 3g5u_A MCG1178, multidrug resi 96.6 0.0012 4.2E-08 73.3 4.7 39 3-52 417-455 (1284)
322 1ex7_A Guanylate kinase; subst 96.6 0.00073 2.5E-08 58.7 2.3 41 4-44 3-45 (186)
323 2npi_A Protein CLP1; CLP1-PCF1 96.6 0.00054 1.9E-08 67.9 1.7 23 2-24 138-160 (460)
324 3ozx_A RNAse L inhibitor; ATP 96.6 0.00069 2.3E-08 68.5 2.4 22 4-25 27-48 (538)
325 4f4c_A Multidrug resistance pr 96.6 0.0015 5.1E-08 72.8 5.2 41 2-53 444-484 (1321)
326 3g5u_A MCG1178, multidrug resi 96.6 0.0015 5.2E-08 72.6 5.0 38 3-51 1060-1097(1284)
327 1yqt_A RNAse L inhibitor; ATP- 96.6 0.00082 2.8E-08 67.9 2.7 22 3-24 313-334 (538)
328 4fid_A G protein alpha subunit 96.6 0.0028 9.7E-08 60.2 6.1 36 66-108 161-196 (340)
329 3t61_A Gluconokinase; PSI-biol 96.6 0.0011 3.7E-08 57.6 3.0 23 2-24 18-40 (202)
330 1yqt_A RNAse L inhibitor; ATP- 96.5 0.00097 3.3E-08 67.4 3.1 23 3-25 48-70 (538)
331 2jeo_A Uridine-cytidine kinase 96.5 0.001 3.6E-08 59.8 3.0 22 3-24 26-47 (245)
332 4a74_A DNA repair and recombin 96.5 0.001 3.6E-08 58.4 2.8 21 4-24 27-47 (231)
333 1lw7_A Transcriptional regulat 96.5 0.001 3.5E-08 63.6 3.0 23 2-24 170-192 (365)
334 3aez_A Pantothenate kinase; tr 96.5 0.0011 3.7E-08 62.3 3.0 22 3-24 91-112 (312)
335 3bk7_A ABC transporter ATP-bin 96.5 0.00091 3.1E-08 68.5 2.5 22 3-24 383-404 (607)
336 2ehv_A Hypothetical protein PH 96.5 0.0012 4.2E-08 58.8 3.0 22 3-24 31-52 (251)
337 3j16_B RLI1P; ribosome recycli 96.5 0.0012 4E-08 67.7 3.1 23 3-25 104-126 (608)
338 2iyv_A Shikimate kinase, SK; t 96.4 0.0014 4.7E-08 55.9 2.9 24 1-24 1-24 (184)
339 1qhx_A CPT, protein (chloramph 96.4 0.0018 6.2E-08 54.7 3.6 24 1-24 2-25 (178)
340 1knq_A Gluconate kinase; ALFA/ 96.4 0.0014 4.9E-08 55.3 3.0 22 3-24 9-30 (175)
341 3bk7_A ABC transporter ATP-bin 96.4 0.0013 4.6E-08 67.3 2.8 23 3-25 118-140 (607)
342 3ec1_A YQEH GTPase; atnos1, at 96.4 0.0039 1.3E-07 59.8 5.9 110 198-309 97-224 (369)
343 3kb2_A SPBC2 prophage-derived 96.4 0.0019 6.4E-08 54.0 3.2 22 3-24 2-23 (173)
344 2qt1_A Nicotinamide riboside k 96.3 0.002 6.9E-08 56.1 3.5 24 2-25 21-44 (207)
345 2og2_A Putative signal recogni 96.3 0.0011 3.6E-08 63.6 1.7 22 3-24 158-179 (359)
346 3uie_A Adenylyl-sulfate kinase 96.3 0.0019 6.5E-08 56.1 3.1 22 3-24 26-47 (200)
347 3ec2_A DNA replication protein 96.3 0.0017 5.7E-08 55.3 2.5 22 3-24 39-60 (180)
348 3cm0_A Adenylate kinase; ATP-b 96.3 0.002 6.8E-08 54.8 3.0 23 2-24 4-26 (186)
349 1p9r_A General secretion pathw 96.3 0.0012 4.2E-08 64.5 1.8 21 4-24 169-189 (418)
350 1qhl_A Protein (cell division 96.2 0.00019 6.3E-09 64.5 -4.0 20 5-24 30-49 (227)
351 4e22_A Cytidylate kinase; P-lo 96.2 0.0025 8.6E-08 57.7 3.6 21 3-23 28-48 (252)
352 1e6c_A Shikimate kinase; phosp 96.2 0.0026 9E-08 53.3 3.2 24 1-24 1-24 (173)
353 3kta_A Chromosome segregation 96.2 0.0026 8.8E-08 54.1 3.1 21 4-24 28-48 (182)
354 1qf9_A UMP/CMP kinase, protein 96.1 0.0032 1.1E-07 53.6 3.4 24 1-24 5-28 (194)
355 1np6_A Molybdopterin-guanine d 96.1 0.0032 1.1E-07 53.9 3.4 22 3-24 7-28 (174)
356 2qor_A Guanylate kinase; phosp 96.1 0.0028 9.7E-08 55.1 3.1 24 2-25 12-35 (204)
357 1nks_A Adenylate kinase; therm 96.1 0.0032 1.1E-07 53.5 3.4 22 3-24 2-23 (194)
358 2ewv_A Twitching motility prot 96.1 0.0018 6.1E-08 62.3 1.9 22 3-24 137-158 (372)
359 3jvv_A Twitching mobility prot 96.1 0.0024 8.3E-08 61.1 2.7 21 4-24 125-145 (356)
360 3lw7_A Adenylate kinase relate 96.1 0.0032 1.1E-07 52.4 3.2 20 3-22 2-21 (179)
361 3trf_A Shikimate kinase, SK; a 96.1 0.0034 1.2E-07 53.4 3.4 23 2-24 5-27 (185)
362 2rhm_A Putative kinase; P-loop 96.1 0.0035 1.2E-07 53.5 3.4 23 2-24 5-27 (193)
363 1via_A Shikimate kinase; struc 96.1 0.0031 1E-07 53.4 3.0 22 3-24 5-26 (175)
364 3fb4_A Adenylate kinase; psych 96.0 0.0034 1.2E-07 54.9 3.3 22 3-24 1-22 (216)
365 3vaa_A Shikimate kinase, SK; s 96.0 0.0036 1.2E-07 54.2 3.4 22 3-24 26-47 (199)
366 2bwj_A Adenylate kinase 5; pho 96.0 0.0032 1.1E-07 54.0 3.0 23 2-24 12-34 (199)
367 1rz3_A Hypothetical protein rb 96.0 0.0033 1.1E-07 54.6 3.1 22 3-24 23-44 (201)
368 3dl0_A Adenylate kinase; phosp 96.0 0.0035 1.2E-07 54.8 3.3 22 3-24 1-22 (216)
369 3j16_B RLI1P; ribosome recycli 96.0 0.0033 1.1E-07 64.4 3.5 22 4-25 380-401 (608)
370 2jaq_A Deoxyguanosine kinase; 96.0 0.0038 1.3E-07 53.7 3.4 22 3-24 1-22 (205)
371 1tev_A UMP-CMP kinase; ploop, 96.0 0.0037 1.3E-07 53.3 3.2 23 2-24 3-25 (196)
372 2kjq_A DNAA-related protein; s 96.0 0.0025 8.5E-08 53.0 2.0 22 3-24 37-58 (149)
373 1kht_A Adenylate kinase; phosp 96.0 0.0042 1.4E-07 52.8 3.5 23 2-24 3-25 (192)
374 2cdn_A Adenylate kinase; phosp 95.9 0.0043 1.5E-07 53.7 3.6 23 2-24 20-42 (201)
375 2x8a_A Nuclear valosin-contain 95.9 0.0032 1.1E-07 57.9 2.7 21 4-24 46-66 (274)
376 3tqc_A Pantothenate kinase; bi 95.9 0.0037 1.3E-07 58.9 3.2 22 3-24 93-114 (321)
377 2plr_A DTMP kinase, probable t 95.9 0.0043 1.5E-07 53.7 3.4 23 2-24 4-26 (213)
378 2wwf_A Thymidilate kinase, put 95.9 0.0049 1.7E-07 53.5 3.7 23 2-24 10-32 (212)
379 2v54_A DTMP kinase, thymidylat 95.9 0.0049 1.7E-07 53.1 3.6 23 2-24 4-26 (204)
380 2vp4_A Deoxynucleoside kinase; 95.9 0.0029 9.9E-08 56.3 2.2 22 3-24 21-42 (230)
381 3nwj_A ATSK2; P loop, shikimat 95.8 0.004 1.4E-07 56.5 3.0 23 2-24 48-70 (250)
382 1f2t_A RAD50 ABC-ATPase; DNA d 95.8 0.0046 1.6E-07 51.4 3.0 19 5-23 26-44 (149)
383 3ake_A Cytidylate kinase; CMP 95.8 0.0053 1.8E-07 53.0 3.3 24 1-24 1-24 (208)
384 3qf7_A RAD50; ABC-ATPase, ATPa 95.7 0.0045 1.5E-07 59.3 3.0 19 5-23 26-44 (365)
385 3h2y_A GTPase family protein; 95.7 0.01 3.4E-07 57.0 5.4 110 198-309 95-223 (368)
386 2pez_A Bifunctional 3'-phospho 95.7 0.0054 1.9E-07 52.0 3.2 23 2-24 5-27 (179)
387 2pt5_A Shikimate kinase, SK; a 95.7 0.006 2E-07 50.9 3.3 22 3-24 1-22 (168)
388 1y63_A LMAJ004144AAA protein; 95.7 0.0064 2.2E-07 52.0 3.5 22 3-24 11-32 (184)
389 2yvu_A Probable adenylyl-sulfa 95.7 0.0057 2E-07 52.2 3.2 23 2-24 13-35 (186)
390 1e4v_A Adenylate kinase; trans 95.7 0.0062 2.1E-07 53.3 3.4 22 3-24 1-22 (214)
391 3l82_B F-box only protein 4; T 95.7 0.015 5E-07 51.5 5.7 58 197-278 160-222 (227)
392 1ixz_A ATP-dependent metallopr 95.6 0.005 1.7E-07 55.3 2.8 21 4-24 51-71 (254)
393 1zak_A Adenylate kinase; ATP:A 95.6 0.0068 2.3E-07 53.3 3.3 23 2-24 5-27 (222)
394 2w0m_A SSO2452; RECA, SSPF, un 95.6 0.0056 1.9E-07 53.6 2.7 22 3-24 24-45 (235)
395 2c95_A Adenylate kinase 1; tra 95.6 0.0082 2.8E-07 51.3 3.7 23 2-24 9-31 (196)
396 1aky_A Adenylate kinase; ATP:A 95.5 0.0082 2.8E-07 52.7 3.6 23 2-24 4-26 (220)
397 1vht_A Dephospho-COA kinase; s 95.5 0.0077 2.6E-07 52.7 3.4 23 2-24 4-26 (218)
398 1ltq_A Polynucleotide kinase; 95.5 0.0073 2.5E-07 55.6 3.4 24 1-24 1-24 (301)
399 1nn5_A Similar to deoxythymidy 95.5 0.0082 2.8E-07 52.1 3.5 23 2-24 9-31 (215)
400 3sr0_A Adenylate kinase; phosp 95.5 0.0078 2.7E-07 52.9 3.3 22 3-24 1-22 (206)
401 4ido_A Atlastin-1; GTPase, GTP 95.4 0.036 1.2E-06 54.5 8.2 20 4-23 69-88 (457)
402 1zd8_A GTP:AMP phosphotransfer 95.4 0.0088 3E-07 52.8 3.6 22 3-24 8-29 (227)
403 1cr0_A DNA primase/helicase; R 95.4 0.0067 2.3E-07 55.9 2.8 21 4-24 37-57 (296)
404 1in4_A RUVB, holliday junction 95.4 0.0063 2.2E-07 57.4 2.7 23 3-25 52-74 (334)
405 2pbr_A DTMP kinase, thymidylat 95.4 0.0086 2.9E-07 51.0 3.3 22 3-24 1-22 (195)
406 3iij_A Coilin-interacting nucl 95.4 0.0084 2.9E-07 50.8 3.2 22 3-24 12-33 (180)
407 2xxa_A Signal recognition part 95.4 0.01 3.6E-07 58.1 4.3 21 3-23 101-121 (433)
408 1iy2_A ATP-dependent metallopr 95.4 0.0068 2.3E-07 55.4 2.8 21 4-24 75-95 (278)
409 3r20_A Cytidylate kinase; stru 95.4 0.009 3.1E-07 53.6 3.5 23 2-24 9-31 (233)
410 3tlx_A Adenylate kinase 2; str 95.3 0.0092 3.1E-07 53.6 3.4 23 2-24 29-51 (243)
411 1odf_A YGR205W, hypothetical 3 95.3 0.008 2.7E-07 55.7 3.0 22 3-24 32-53 (290)
412 1uf9_A TT1252 protein; P-loop, 95.3 0.0098 3.3E-07 51.1 3.3 22 3-24 9-30 (203)
413 2p5t_B PEZT; postsegregational 95.2 0.0066 2.2E-07 54.8 2.1 23 2-24 32-54 (253)
414 2xb4_A Adenylate kinase; ATP-b 95.2 0.011 3.6E-07 52.3 3.4 22 3-24 1-22 (223)
415 2z0h_A DTMP kinase, thymidylat 95.2 0.011 3.7E-07 50.5 3.3 22 3-24 1-22 (197)
416 1tf7_A KAIC; homohexamer, hexa 95.2 0.0082 2.8E-07 60.3 2.9 22 3-24 40-63 (525)
417 2iw3_A Elongation factor 3A; a 95.2 0.0086 3E-07 64.3 3.2 22 3-24 462-483 (986)
418 3be4_A Adenylate kinase; malar 95.2 0.012 4.1E-07 51.7 3.6 23 2-24 5-27 (217)
419 4eaq_A DTMP kinase, thymidylat 95.2 0.01 3.5E-07 52.9 3.2 23 2-24 26-48 (229)
420 1m7g_A Adenylylsulfate kinase; 95.2 0.01 3.5E-07 51.8 3.1 23 2-24 25-47 (211)
421 1gtv_A TMK, thymidylate kinase 95.1 0.0059 2E-07 53.0 1.5 22 3-24 1-22 (214)
422 4aby_A DNA repair protein RECN 95.1 0.0043 1.5E-07 60.0 0.4 21 4-24 62-82 (415)
423 2vli_A Antibiotic resistance p 95.1 0.0087 3E-07 50.6 2.3 22 3-24 6-27 (183)
424 1gvn_B Zeta; postsegregational 95.1 0.01 3.6E-07 54.7 3.0 23 2-24 33-55 (287)
425 2ze6_A Isopentenyl transferase 95.0 0.011 3.9E-07 53.4 3.0 22 3-24 2-23 (253)
426 1svm_A Large T antigen; AAA+ f 95.0 0.012 3.9E-07 56.8 3.2 22 3-24 170-191 (377)
427 3qks_A DNA double-strand break 95.0 0.013 4.3E-07 51.3 3.0 19 5-23 26-44 (203)
428 1ukz_A Uridylate kinase; trans 94.9 0.014 4.9E-07 50.3 3.3 22 3-24 16-37 (203)
429 1xjc_A MOBB protein homolog; s 94.9 0.015 5E-07 49.6 3.2 22 3-24 5-26 (169)
430 3a4m_A L-seryl-tRNA(SEC) kinas 94.9 0.015 5E-07 52.8 3.4 22 3-24 5-26 (260)
431 1n0w_A DNA repair protein RAD5 94.9 0.014 4.9E-07 51.5 3.2 22 3-24 25-46 (243)
432 2cvh_A DNA repair and recombin 94.9 0.012 4.2E-07 51.0 2.7 22 3-24 21-42 (220)
433 1q3t_A Cytidylate kinase; nucl 94.8 0.015 5E-07 51.8 3.2 23 2-24 16-38 (236)
434 1t9h_A YLOQ, probable GTPase E 94.8 0.025 8.5E-07 52.9 4.8 76 198-274 116-194 (307)
435 1ak2_A Adenylate kinase isoenz 94.8 0.018 6E-07 51.1 3.6 22 3-24 17-38 (233)
436 2px0_A Flagellar biosynthesis 94.8 0.016 5.3E-07 53.9 3.3 23 3-25 106-128 (296)
437 3qkt_A DNA double-strand break 94.7 0.015 5.1E-07 54.9 3.0 20 5-24 26-45 (339)
438 3cr8_A Sulfate adenylyltranfer 94.6 0.012 4E-07 59.6 2.2 22 3-24 370-391 (552)
439 3gmt_A Adenylate kinase; ssgci 94.6 0.019 6.5E-07 51.4 3.4 22 3-24 9-30 (230)
440 2kmm_A Guanosine-3',5'-BIS(dip 94.6 0.036 1.2E-06 39.8 4.3 52 291-361 11-62 (73)
441 1lv7_A FTSH; alpha/beta domain 94.5 0.019 6.6E-07 51.5 3.2 22 3-24 46-67 (257)
442 1nlf_A Regulatory protein REPA 94.5 0.018 6E-07 52.6 2.8 22 3-24 31-52 (279)
443 1uj2_A Uridine-cytidine kinase 94.4 0.022 7.5E-07 51.2 3.3 22 3-24 23-44 (252)
444 1w1w_A Structural maintenance 94.4 0.017 5.9E-07 56.3 2.7 22 4-25 28-49 (430)
445 2o5v_A DNA replication and rep 94.4 0.018 6.2E-07 55.0 2.8 21 4-24 28-48 (359)
446 1vma_A Cell division protein F 94.4 0.021 7E-07 53.4 3.1 23 3-25 105-127 (306)
447 3crm_A TRNA delta(2)-isopenten 94.3 0.024 8.1E-07 53.3 3.4 24 1-24 4-27 (323)
448 3l2o_B F-box only protein 4; s 94.3 0.073 2.5E-06 49.3 6.5 58 197-278 245-307 (312)
449 1zuh_A Shikimate kinase; alpha 94.3 0.025 8.5E-07 47.2 3.2 22 3-24 8-29 (168)
450 1e69_A Chromosome segregation 94.2 0.016 5.5E-07 54.2 2.1 21 4-24 26-46 (322)
451 3ux8_A Excinuclease ABC, A sub 94.2 0.014 4.9E-07 60.3 1.9 21 3-23 349-369 (670)
452 2f6r_A COA synthase, bifunctio 94.1 0.027 9.4E-07 51.7 3.3 22 3-24 76-97 (281)
453 2grj_A Dephospho-COA kinase; T 94.0 0.028 9.5E-07 48.7 3.1 22 3-24 13-34 (192)
454 3m6a_A ATP-dependent protease 94.0 0.031 1.1E-06 56.3 3.8 22 3-24 109-130 (543)
455 4b4t_L 26S protease subunit RP 94.0 0.052 1.8E-06 53.2 5.3 22 3-24 216-237 (437)
456 1jbk_A CLPB protein; beta barr 94.0 0.035 1.2E-06 46.4 3.5 22 3-24 44-65 (195)
457 3ux8_A Excinuclease ABC, A sub 93.9 0.038 1.3E-06 57.1 4.3 17 3-19 45-61 (670)
458 2h92_A Cytidylate kinase; ross 93.9 0.03 1E-06 48.8 3.1 23 2-24 3-25 (219)
459 3d3q_A TRNA delta(2)-isopenten 93.8 0.033 1.1E-06 52.8 3.3 21 4-24 9-29 (340)
460 2w58_A DNAI, primosome compone 93.8 0.034 1.2E-06 47.8 3.2 22 3-24 55-76 (202)
461 1pzn_A RAD51, DNA repair and r 93.7 0.029 1E-06 53.3 2.8 22 3-24 132-153 (349)
462 3cwq_A Para family chromosome 93.7 0.66 2.2E-05 40.1 11.4 33 66-107 68-101 (209)
463 4b4t_K 26S protease regulatory 93.6 0.017 5.9E-07 56.4 1.1 22 3-24 207-228 (428)
464 4b4t_J 26S protease regulatory 93.6 0.014 4.9E-07 56.5 0.4 22 3-24 183-204 (405)
465 1ewq_A DNA mismatch repair pro 93.6 0.033 1.1E-06 58.5 3.2 23 3-25 577-599 (765)
466 1bif_A 6-phosphofructo-2-kinas 93.6 0.037 1.3E-06 54.6 3.4 23 2-24 39-61 (469)
467 1wb9_A DNA mismatch repair pro 93.5 0.036 1.2E-06 58.5 3.3 23 3-25 608-630 (800)
468 3umf_A Adenylate kinase; rossm 93.4 0.041 1.4E-06 48.7 3.1 21 4-24 31-51 (217)
469 3bos_A Putative DNA replicatio 93.4 0.046 1.6E-06 47.7 3.4 22 3-24 53-74 (242)
470 4b4t_M 26S protease regulatory 93.3 0.019 6.6E-07 56.2 0.8 22 3-24 216-237 (434)
471 1sxj_E Activator 1 40 kDa subu 93.3 0.036 1.2E-06 52.0 2.6 20 5-24 39-58 (354)
472 1xwi_A SKD1 protein; VPS4B, AA 93.1 0.15 5E-06 47.7 6.5 22 3-24 46-67 (322)
473 3b9p_A CG5977-PA, isoform A; A 93.0 0.049 1.7E-06 49.8 3.1 22 3-24 55-76 (297)
474 2dr3_A UPF0273 protein PH0284; 93.0 0.052 1.8E-06 47.8 3.1 22 3-24 24-45 (247)
475 3cf0_A Transitional endoplasmi 93.0 0.051 1.7E-06 50.2 3.1 22 3-24 50-71 (301)
476 2p65_A Hypothetical protein PF 93.0 0.046 1.6E-06 45.6 2.5 22 3-24 44-65 (187)
477 2ga8_A Hypothetical 39.9 kDa p 92.8 0.052 1.8E-06 51.7 2.9 23 3-25 25-47 (359)
478 3auy_A DNA double-strand break 92.8 0.055 1.9E-06 51.6 3.1 19 5-23 28-46 (371)
479 3foz_A TRNA delta(2)-isopenten 92.7 0.064 2.2E-06 50.1 3.4 22 3-24 11-32 (316)
480 1tue_A Replication protein E1; 92.7 0.041 1.4E-06 48.4 1.8 21 4-24 60-80 (212)
481 2rcn_A Probable GTPase ENGC; Y 92.7 0.11 3.8E-06 49.5 5.0 79 198-278 159-240 (358)
482 3n70_A Transport activator; si 92.6 0.091 3.1E-06 42.8 3.9 22 3-24 25-46 (145)
483 3h4m_A Proteasome-activating n 92.6 0.062 2.1E-06 48.7 3.1 22 3-24 52-73 (285)
484 2dhr_A FTSH; AAA+ protein, hex 92.5 0.064 2.2E-06 53.5 3.3 23 3-25 65-87 (499)
485 2ocp_A DGK, deoxyguanosine kin 92.5 0.072 2.5E-06 47.3 3.3 23 2-24 2-24 (241)
486 3pxg_A Negative regulator of g 92.5 0.038 1.3E-06 54.5 1.6 23 3-25 202-224 (468)
487 3t15_A Ribulose bisphosphate c 92.5 0.071 2.4E-06 49.1 3.3 22 3-24 37-58 (293)
488 2qz4_A Paraplegin; AAA+, SPG7, 92.4 0.07 2.4E-06 47.6 3.2 22 3-24 40-61 (262)
489 4b4t_I 26S protease regulatory 92.4 0.035 1.2E-06 54.2 1.2 22 3-24 217-238 (437)
490 1njg_A DNA polymerase III subu 92.3 0.065 2.2E-06 46.3 2.7 22 4-25 47-68 (250)
491 1sxj_C Activator 1 40 kDa subu 92.3 0.06 2.1E-06 50.4 2.7 21 5-25 49-69 (340)
492 1tf7_A KAIC; homohexamer, hexa 92.3 0.063 2.1E-06 53.8 2.9 23 3-25 282-304 (525)
493 1zu4_A FTSY; GTPase, signal re 92.2 0.068 2.3E-06 50.1 2.9 22 3-24 106-127 (320)
494 2ce7_A Cell division protein F 92.2 0.076 2.6E-06 52.6 3.4 23 3-25 50-72 (476)
495 2qby_A CDC6 homolog 1, cell di 92.2 0.068 2.3E-06 50.2 2.9 22 3-24 46-67 (386)
496 3thx_B DNA mismatch repair pro 92.2 0.048 1.6E-06 58.3 2.0 21 4-24 675-695 (918)
497 1ls1_A Signal recognition part 92.1 0.075 2.6E-06 49.2 3.1 23 3-25 99-121 (295)
498 1l8q_A Chromosomal replication 92.1 0.066 2.3E-06 49.7 2.7 21 4-24 39-59 (324)
499 2chg_A Replication factor C sm 91.9 0.083 2.9E-06 45.1 3.0 21 4-24 40-60 (226)
500 4fcw_A Chaperone protein CLPB; 91.9 0.074 2.5E-06 48.8 2.7 21 4-24 49-69 (311)
No 1
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=5.1e-91 Score=673.81 Aligned_cols=363 Identities=51% Similarity=0.892 Sum_probs=332.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 1 MNLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 1 m~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
|+++|+|+|+||||||||||+|++..+.+++|||||++|+.|.+.+++.+++.+.+.+.|.+.++.++++|||||+.+++
T Consensus 1 m~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 1 MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 89999999999999999999999988889999999999999999999988888999999999999999999999999988
Q ss_pred CcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHH
Q psy2401 81 SKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIE 160 (363)
Q Consensus 81 ~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~ 160 (363)
+.+++++++|+++++++|+++||+|++++.+++|+.|++||.+|++.++.||.++|++.+++|+.+++|..++|++....
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~ 160 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKF 160 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999887777777777
Q ss_pred HHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHH
Q psy2401 161 LLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKL 240 (363)
Q Consensus 161 ~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~ 240 (363)
+.+++++++++|+++.+.+.+.|+++|...++.+.+++.||++|++|++|.++.++++.+.+++++..++.+++++||++
T Consensus 161 ~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 161 ELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp HHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 78899999999999999988899999999999999999999999999999765457899999999988888999999999
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeCCCCceEEEeecCCCCHHHhhhhhhcchhcccEEEE
Q psy2401 241 EEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTVGKKEIRAWTIPNGTTAEQAAGIIHTDIKRGFIRAL 320 (363)
Q Consensus 241 e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~g~~e~raw~~~~g~ta~~~A~~IHsD~~~gfi~A~ 320 (363)
|++|++|+++++.+||+++|+.++|++++++++|++|+||+|||+||+|+||||+++|+||+||||+|||||+|||||||
T Consensus 241 E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g~~e~raw~i~~G~ta~~aAg~IH~D~~~gFi~Ae 320 (363)
T 1jal_A 241 ESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAE 320 (363)
T ss_dssp HHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTTEEEEEEECSSEEEEEEEETTCBHHHHHHTTCTTHHHHCCEEE
T ss_pred HHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHhCCEEEECCCCCCcceeEecCCCcHHHHHHhhHHHHHhccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccccccccChhhHhhcCceeecCCCeeeeCCCEEEEEecC
Q psy2401 321 TISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDGDILNFLFNI 363 (363)
Q Consensus 321 v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdii~~~f~~ 363 (363)
||+|+||+++||++.||++|++|+|||||+|||||||+|||||
T Consensus 321 v~~~~d~~~~~~~~~~k~~g~~r~egk~y~v~dgDii~f~fn~ 363 (363)
T 1jal_A 321 VIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMHFRFNV 363 (363)
T ss_dssp EECHHHHHHTTSHHHHHHTTCCEEECTTCBCCTTCEEEEESCC
T ss_pred EcCHHHHHHhCCHHHHHhcCCeeccCCccEecCCCEEEEEecC
Confidence 9999999999999999999999999999999999999999997
No 2
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=100.00 E-value=2.4e-86 Score=644.48 Aligned_cols=360 Identities=43% Similarity=0.730 Sum_probs=325.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcccccccccccccc----ccceeEEEEeeecccC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKK----IFPAIIKLVDIAGLVS 78 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~----~~~~~i~lvDtpGl~~ 78 (363)
++|+|+|+||||||||||+|++..+.+++|||+|+.|+.|.+.+++.+++.+...+++.+ ..+.++++|||||+.+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 789999999999999999999987778999999999999999999988888888888877 6678899999999999
Q ss_pred CCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchh
Q psy2401 79 GASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHS 158 (363)
Q Consensus 79 ~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~ 158 (363)
+++.+++++++|+++++.+|+++||+|++++.+++|+.|++||.+|++.+++||.++|++.+++++.++.+..+ +++..
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~-~~~~~ 160 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEAR-ADRER 160 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCGGG
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhc-cchhH
Confidence 99888899999999999999999999999999999999999999999999999999999999999998887644 35566
Q ss_pred HHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCC-c--hHHHHHHHHHHhcCCCcEEE
Q psy2401 159 IELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFK-N--NLLLDQLKIYAHNQNIPIII 235 (363)
Q Consensus 159 ~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~-~--~~~~~~i~~~~~~~~~~~i~ 235 (363)
..+.+++++++++|+++.+.+.++|+++++..++.+.+++.||++|++||+|.++. . +.+.+.+++++..++.++++
T Consensus 161 ~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~ 240 (368)
T 2dby_A 161 LPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVV 240 (368)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEE
Confidence 67788999999999999888878899999999999999999999999999986542 2 67899999998877889999
Q ss_pred eeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeCCCCceEEEeecCCCCHHHhhhhhhcchhcc
Q psy2401 236 ICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTVGKKEIRAWTIPNGTTAEQAAGIIHTDIKRG 315 (363)
Q Consensus 236 ~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~g~~e~raw~~~~g~ta~~~A~~IHsD~~~g 315 (363)
+||++|++|.+|+++++.+||+++|+.++|++++++++|++|+||+|||+||+|+||||+++|+||+||||+|||||+||
T Consensus 241 iSAk~E~el~eL~~~~~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g~~e~~aw~i~~g~ta~~~a~~IH~d~~~~ 320 (368)
T 2dby_A 241 VSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAGEKEVRAWTVRRGTKAPRAAGEIHSDMERG 320 (368)
T ss_dssp ECHHHHHHHHTSCHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTEEEEEEESSSCEEEEEEETTCBHHHHHHHHCHHHHHS
T ss_pred eechhHHHHHHhchHHHHHHHHHhCcchhhHHHHHHHHHHHhCCEEEECCCCCCcceEEecCCCcHHHHHHhhHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecccccccccChhhHhhcCceeecCCCeeeeCCCEEEEEecC
Q psy2401 316 FIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDGDILNFLFNI 363 (363)
Q Consensus 316 fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdii~~~f~~ 363 (363)
|||||||+|+||+++||++.||++|++|+|||||+|||||||+|||||
T Consensus 321 fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdi~~~~f~~ 368 (368)
T 2dby_A 321 FIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGDVIYVLFNA 368 (368)
T ss_dssp CCEEEEEEHHHHHHHTSHHHHHHTTCCEEECTTCBCCTTEEEEEEC--
T ss_pred CeEEEEccHHHHHHhCCHHHHHhcCCccccCCCceecCCCEEEEEecC
Confidence 999999999999999999999999999999999999999999999997
No 3
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.8e-86 Score=646.31 Aligned_cols=362 Identities=40% Similarity=0.673 Sum_probs=296.1
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 1 MNLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 1 m~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
|+++|+|+|+||||||||||+|++..+.++++||||++|+.|.+.+++.++..+++.+.|.+.++.++++|||||+.+++
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 46899999999999999999999988889999999999999999999988888888888988889999999999999999
Q ss_pred CcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhccccc-CCchhH
Q psy2401 81 SKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFL-KNEHSI 159 (363)
Q Consensus 81 ~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~-g~~~~~ 159 (363)
+.++++++.++++++++|+++||+|++++.++.|+.+..||+++++.++.||.+++++.+++++.++.+..++ |++...
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l~d~~~~~k~~~~~~k~~~~~g~~~~~ 180 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLK 180 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHHHHHHHHHHHHHTTCSCC--------C
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhhhhHHHHHHhhhhhhhhhhcccchhhh
Confidence 8889999999999999999999999999999999999999999999999999999999999999999988654 444444
Q ss_pred HHHHHHHHHHhhhcCC-Cccc-ccCCChHHHHHHhhhcccccccEEEeccccccCC--CchHHHHHHHHHHhc--CCCcE
Q psy2401 160 ELLKLLKRIIFNLNKS-IPIR-LMSLNNEELMSIKFLNLLTIKPIIFVANVKENGF--KNNLLLDQLKIYAHN--QNIPI 233 (363)
Q Consensus 160 ~~~~~l~~i~~~L~~~-~~~~-~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~--~~~~~~~~i~~~~~~--~~~~~ 233 (363)
...+++++++++|+++ .+++ ...|+.+|.+.++.+.+++.||++|++|+.+.++ ..+++.+.+++++.. .+.++
T Consensus 181 ~~~~ll~~i~~~L~e~~~~~~~~~~~~~~e~e~i~~~~llt~KPviy~~Nv~e~~~~~~~n~~~~~v~~~~~~~~~~~~~ 260 (396)
T 2ohf_A 181 PEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRKKNKWLIKIKEWVDKYDPGALV 260 (396)
T ss_dssp CHHHHHHHHHHHTTC--CCGGGCCCCCHHHHHHHHHHCCGGGSCEEEEEECCHHHHHHTCCHHHHHHHHHHHHHSTTCEE
T ss_pred hHHHHHHHHHHHHHhcCcchhhcccCCHHHHHHHHHHHHHhCCceEEEEEecHHHhcccccHHHHHHHHHHHhhCCCCeE
Confidence 5678999999999998 6665 3479999888889999999999999999986543 236788889988765 46789
Q ss_pred EEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeCCCCceEEEeecCCCCHHHhhhhhhcchh
Q psy2401 234 IIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTVGKKEIRAWTIPNGTTAEQAAGIIHTDIK 313 (363)
Q Consensus 234 i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~g~~e~raw~~~~g~ta~~~A~~IHsD~~ 313 (363)
+++||++|.+|++|+++++.+||+++|++ +|++++++++|++|+||+|||+||||+||||+++|+||+||||+|||||+
T Consensus 261 v~~sa~~E~~l~~l~~~e~~~~l~~~g~~-~~l~~li~~~~~~L~li~~fT~g~~evrawti~~g~ta~~aAg~IH~D~~ 339 (396)
T 2ohf_A 261 IPFSGALELKLQELSAEERQKYLEANMTQ-SALPKIIKAGFAALQLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFE 339 (396)
T ss_dssp EEECHHHHHHHHHSCHHHHHHHHHHTTCC-CSHHHHHHHHHHHTTEEEEEEESSSEEEEEEEETTCBHHHHHHTTCTHHH
T ss_pred EEEEcHHHHHHhhCCHHHHHHHHHHhCCC-chHHHHHHHHHHHhCCEEEECCCCCcceeEEecCCCcHHHHHhhhHHHHH
Confidence 99999999999999999999999999985 99999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEEecccccccccChhhHhhcCceeecCCCeeeeCCCEEEEEecC
Q psy2401 314 RGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDGDILNFLFNI 363 (363)
Q Consensus 314 ~gfi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdii~~~f~~ 363 (363)
|||||||||+|+||+++||++.||++|++|++||||+|||||||+|||||
T Consensus 340 ~gFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~Gk~y~v~dgDii~f~fn~ 389 (396)
T 2ohf_A 340 KGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDIIFFKFNT 389 (396)
T ss_dssp HHEEEEEEECHHHHHHHCSHHHHHHTTCCEEECTTCBCCTTCEEEEEEC-
T ss_pred hcceEEEEccHHHHHHhCCHHHHHhcCcccccCCCceeeCCCEEEEEecC
Confidence 99999999999999999999999999999999999999999999999997
No 4
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=6.3e-85 Score=638.20 Aligned_cols=362 Identities=36% Similarity=0.638 Sum_probs=335.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHcCCc-cccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCC
Q psy2401 1 MNLKCGLIGLPNVGKSTLFNALTKLKI-SAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSG 79 (363)
Q Consensus 1 m~~~i~lvG~~g~GKSTL~n~Lt~~~~-~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
|+.++||+|+||||||||||+|++..+ .++++||||++|+.|.+.+++.+++.+.+.++|.+.++..+.++|+||+..+
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 457999999999999999999999876 8999999999999999999998888888999999999999999999999999
Q ss_pred CCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcc-cccC----
Q psy2401 80 ASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKK-FFLK---- 154 (363)
Q Consensus 80 ~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~-~~~g---- 154 (363)
.+.++++++.|+.+++.+|++++|+|++++.++.|+.|..||++++..+.+|+..+|++.+++++.++.+. .++|
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~ 178 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE 178 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeccccCcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988888877 5554
Q ss_pred CchhHHHHHHHHHHHhhhcCC-CcccccCCChHHHHHHhhhcccccccEEEeccccccCCC--chHHHHHHHHHHhcCC-
Q psy2401 155 NEHSIELLKLLKRIIFNLNKS-IPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFK--NNLLLDQLKIYAHNQN- 230 (363)
Q Consensus 155 ~~~~~~~~~~l~~i~~~L~~~-~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~--~~~~~~~i~~~~~~~~- 230 (363)
.+......++++++.++|+++ ++++...|+++|++.++.+.+++.||++|++|++|.++. .+++.+++++++.+++
T Consensus 179 sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~~~e~e~i~~~~~lt~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p 258 (392)
T 1ni3_A 179 MKAKKEEQAIIEKVYQYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSP 258 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCGGGSCCCHHHHHHHHTTCCGGGSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTST
T ss_pred cccHHHHHHHHHHHHHHhccCCceeecCCCCHHHHHHHHHHhhhccCceEEEEEecchhhcccchHHHHHHHHHHHhcCC
Confidence 344455677899999999999 888877899999889999999999999999999996532 3678999999988765
Q ss_pred -CcEEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeCCCCceEEEeecCCCCHHHhhhhhh
Q psy2401 231 -IPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTVGKKEIRAWTIPNGTTAEQAAGIIH 309 (363)
Q Consensus 231 -~~~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~g~~e~raw~~~~g~ta~~~A~~IH 309 (363)
.+++++||++|.+|++|+++++.+||+++| +++|++++++++|++|+||+|||+||+|+||||+++|+||+||||+||
T Consensus 259 ~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g-~~~gl~~~i~~~~~~L~l~~~ft~g~~e~rawti~~G~~a~~aag~IH 337 (392)
T 1ni3_A 259 GDTLIPMSVAFEERLTNFTEEEAIEECKKLN-TKSMLPKIIVTGYNALNLINYFTCGEDEVRSWTIRKGTKAPQAAGVIH 337 (392)
T ss_dssp TCCEEEECHHHHHHHTTSCHHHHHHHHHHTT-CCCSHHHHHHHHHHHTTEEEEEECCSSEEEEEEEETTCBHHHHHHHHC
T ss_pred CCeEEEEEhHHHHHHhhCCHHHHHHHHHHhC-CcccHHHHHHHHHHHhCCEEEECCCCCcceeEEeCCCCcHHHHccccc
Confidence 789999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred cchhcccEEEEEecccccccccChhhHhhcCceeecCCCeeeeCCCEEEEEecC
Q psy2401 310 TDIKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDGDILNFLFNI 363 (363)
Q Consensus 310 sD~~~gfi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdii~~~f~~ 363 (363)
|||+|||||||||+|+||+++||++.||++|++|+|||||+|||||||+||||+
T Consensus 338 ~d~~~gfi~ae~~~~~d~~~~g~~~~~k~~g~~r~~gk~y~v~dgdv~~f~f~~ 391 (392)
T 1ni3_A 338 TDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMESGDIAHWKAGK 391 (392)
T ss_dssp HHHHHTCSEEEEECHHHHHHHTSHHHHHHTTCSCEEETTCBCCTTCEEECC---
T ss_pred hhhhhccEEEEECCHHHHHHcCCHHHHHHcCCccccCCceeeeCCCEEEEEccC
Confidence 999999999999999999999999999999999999999999999999999996
No 5
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=2.2e-57 Score=446.04 Aligned_cols=334 Identities=28% Similarity=0.406 Sum_probs=240.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEE----eCCccccccccccccc------cccceeEEEEe
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIE----VPDKRLKHLNNIVKTK------KIFPAIIKLVD 72 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~----~~~~~~~~l~~~~~~~------~~~~~~i~lvD 72 (363)
++|+|+|+||||||||||+|++..+.++++||||++|+.|.+. +++.++ ...+.|. .....++++||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l---~~~~~p~~~~~~~~~~~~~i~lvD 77 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKEL---GCSPNPQNYEYRNGLALIPVKMVD 77 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSS---CCSCCCSSSCEETTEEEEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHh---hhhcccccccccCCcceEEEEEEE
Confidence 5899999999999999999999887889999999999999754 334333 3333332 11125699999
Q ss_pred eecccCCCCcccchhhHHHhhccccCEEEEEEecccCCce-eeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhccc
Q psy2401 73 IAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKI-THISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKF 151 (363)
Q Consensus 73 tpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~-~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~ 151 (363)
|||+.++++.+++++++++.+++.+|++++|+|++++..+ ..+.+.+||.+|++.++.||.++|++.+++++.++.|..
T Consensus 78 tpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~ 157 (397)
T 1wxq_A 78 VAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRI 157 (397)
T ss_dssp CC---------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTT
T ss_pred CCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999988888888899999999999999999999876211 112225699999999999999999999999999998776
Q ss_pred ccCCchhHHH-----------HHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHH
Q psy2401 152 FLKNEHSIEL-----------LKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLD 220 (363)
Q Consensus 152 ~~g~~~~~~~-----------~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~ 220 (363)
+.++...... .+.+.++.+.|+.+.+. ..|+.++...+..+.+++.||++|++||+|.. .+++.+
T Consensus 158 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~--~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~--~~~~l~ 233 (397)
T 1wxq_A 158 KLQKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDP--TKWSQDDLLAFASEIRRVNKPMVIAANKADAA--SDEQIK 233 (397)
T ss_dssp TSSCCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCG--GGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS--CHHHHH
T ss_pred hhcCccHHHHHHHHhcccCCCHHHHHHHHHHhccCCcc--ccCCHHHHHHHHHhhhccCCCEEEEEeCcccc--chHHHH
Confidence 6554332221 24566777777776663 36898887778778788899999999999975 466777
Q ss_pred HHHHHHhcCCCcEEEeeHHHHHHHhcC---------------------CHHHHH-------HHHhhcCCCchhHHHHHH-
Q psy2401 221 QLKIYAHNQNIPIIIICAKLEEEISDL---------------------NNIDKK-------FFLDNLGLKETKLNDLIR- 271 (363)
Q Consensus 221 ~i~~~~~~~~~~~i~~sa~~e~~i~el---------------------~~~~~~-------~~l~~~~l~~~~l~~l~~- 271 (363)
++.+.+...+.+++++||+.|.++.++ ++++++ +||+.+| ++|++++++
T Consensus 234 ~l~~~~~~~~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l~~~~~~~~e~ire~~l~~~g--~~g~~~~i~~ 311 (397)
T 1wxq_A 234 RLVREEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLDRFG--STGVQEVINR 311 (397)
T ss_dssp HHHHHHHHTTCEEEEECHHHHHHHHSCSSSCCCCSCC-----------------CTTHHHHHHTSSSS--SCSHHHHHHH
T ss_pred HHHHHHhhcCCcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccCCHHHHHHHHHHHHHHHHHhC--cchHHHHHHH
Confidence 777766555678999999999999874 444433 7888888 799999997
Q ss_pred HHHHhCCCEEEEeCC----------CCceEEEeecCCCCHHHhhhhhhcchhcccEEEEEecccccccccChhhHhhcCc
Q psy2401 272 ASFSLLDLRTYFTVG----------KKEIRAWTIPNGTTAEQAAGIIHTDIKRGFIRALTISYKDFLLYKGEQGCKNAGK 341 (363)
Q Consensus 272 ~~~~~l~li~~ft~g----------~~e~raw~~~~g~ta~~~A~~IHsD~~~gfi~A~v~~~~d~~~~~~~~~~k~~g~ 341 (363)
++|++|+||+|||+| ++++|||++++|+||+|+|++|||||+++|++|+ ++ +|+
T Consensus 312 ~~~~~L~li~vft~~~~~~~~~~~g~~~~~~~~l~~G~t~~d~a~~iH~d~~~~f~~a~--------------~~--~~~ 375 (397)
T 1wxq_A 312 VVFDLLKLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYAI--------------NA--RTK 375 (397)
T ss_dssp HHHTTSCEEEEEEESCC-----CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTEEEEE--------------ET--TTC
T ss_pred HHHHHhCCeEEEeecccccccCCcCcccceeEEeCCCCCHHHHHHHHhHHHHhhhhhhH--------------Hh--cCC
Confidence 569999999999976 4577999999999999999999999999999998 23 367
Q ss_pred eeecCCCeeeeCCCEEEEEec
Q psy2401 342 IRSEGKKYLVEDGDILNFLFN 362 (363)
Q Consensus 342 ~r~~gk~y~v~dgdii~~~f~ 362 (363)
+|+ |++|+|+|||||+|.-.
T Consensus 376 ~~~-g~~~~l~dgDvv~i~~~ 395 (397)
T 1wxq_A 376 RRV-GEDYELQFNDIVKIVSV 395 (397)
T ss_dssp SBC-CTTCCCCTTEEEEEEEC
T ss_pred EEc-CCCccccCCCEEEEEeC
Confidence 776 99999999999999753
No 6
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-54 Score=419.44 Aligned_cols=290 Identities=24% Similarity=0.356 Sum_probs=208.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.+|||||+||||||||||+||++.+.+++|||||++|+.|.+.+++ .+++++||||+.++++.
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~-----------------~~i~l~D~pGl~~~a~~ 135 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG-----------------AKIQMLDLPGIIDGAKD 135 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT-----------------EEEEEEECGGGCCC---
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC-----------------cEEEEEeCCCccCCchh
Confidence 3799999999999999999999999999999999999999999999 78999999999999999
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhh-hhhhhcccccCCchhHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKY-IDKENKKFFLKNEHSIEL 161 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~-~~~i~k~~~~g~~~~~~~ 161 (363)
+.++++++++.++.||+++||+|+ .||+++++.++.||..+++...+++ ...++|..+.|...
T Consensus 136 ~~~~g~~~l~~i~~ad~il~vvD~------------~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i---- 199 (376)
T 4a9a_A 136 GRGRGKQVIAVARTCNLLFIILDV------------NKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISI---- 199 (376)
T ss_dssp --CHHHHHHHHHHHCSEEEEEEET------------TSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEE----
T ss_pred hhHHHHHHHHHHHhcCcccccccc------------CccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhh----
Confidence 999999999999999999999999 4799999999999998887766664 45667765543210
Q ss_pred HHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHH
Q psy2401 162 LKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLE 241 (363)
Q Consensus 162 ~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e 241 (363)
........++.++...+....+++.+|++|++|..+. +..+.+. .......+++.++++.+
T Consensus 200 -------------~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~ed-----dl~d~~~-~~~~~~~p~i~v~nKid 260 (376)
T 4a9a_A 200 -------------TNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVD-----DLIDVLE-ASSRRYMPAIYVLNKID 260 (376)
T ss_dssp -------------EESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCHH-----HHHHHHT-TTTCEEECEEEEEECGG
T ss_pred -------------hcchhhhhccHHHHHHHHHHhcccCCCeeecccCCHH-----HHHHHHH-HHHhhccceEEEEeccc
Confidence 0001111234444444444445555555555554331 1111111 00111234444444432
Q ss_pred HHHhcCCHHHHH------HHHhhcCCCchhHHHHHHHHHHhCCCEEEEeCCCCceEEEeecCC-----CCHHHhhhhhhc
Q psy2401 242 EEISDLNNIDKK------FFLDNLGLKETKLNDLIRASFSLLDLRTYFTVGKKEIRAWTIPNG-----TTAEQAAGIIHT 310 (363)
Q Consensus 242 ~~i~el~~~~~~------~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~g~~e~raw~~~~g-----~ta~~~A~~IHs 310 (363)
+.+.++.+ .++...+..+++++++++++|+.|+|++|||+||+|+|||+++.| +|+.|+|+.||+
T Consensus 261 ----~~~~eele~l~~~~~~~~is~~~e~gLd~Li~~~y~~L~Li~~fT~g~~E~rawt~~~~~~a~~at~~D~a~~ih~ 336 (376)
T 4a9a_A 261 ----SLSIEELELLYRIPNAVPISSGQDWNLDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVVLRSDRCSVKDFCNQIHK 336 (376)
T ss_dssp ----GSCHHHHHHHTTSTTEEECCTTTCTTHHHHHHHHHHHHCCEEEEECCSSSCCCSSSCEEEBTTBCBHHHHHHHHCG
T ss_pred ----ccCHHHHHHHhcccchhhhhhhhcccchhHHHHHHHHcCCcEEEeCCCCCcCCCCccccccCCCCcHHHHHHHHHH
Confidence 11111111 111122336789999999999999999999999999999997554 667788999999
Q ss_pred chhcccEEEEEecccccccccChhhHhhcCceeecCCCeeeeCCCEEEEE
Q psy2401 311 DIKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDGDILNFL 360 (363)
Q Consensus 311 D~~~gfi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdii~~~ 360 (363)
||.++|++|+||+ + .||.+| |++||||+|||||||+|.
T Consensus 337 d~~~~F~~a~v~G--------s--~~K~~~--r~eGkdyvv~DGDVi~iv 374 (376)
T 4a9a_A 337 SLVDDFRNALVYG--------S--SVKHQP--QYVGLSHILEDEDVVTIL 374 (376)
T ss_dssp GGGGGEEEEEEES--------T--TSSSSS--EEECTTCBCCTTCEEEEE
T ss_pred HHHHhhhHhhhcC--------c--ccCCCC--CccCCCcEEcCCCEEEEE
Confidence 9999999999974 4 467666 578999999999999985
No 7
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.81 E-value=2.1e-20 Score=179.80 Aligned_cols=89 Identities=40% Similarity=0.779 Sum_probs=81.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKG 83 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 83 (363)
+|+|+|.||||||||+|+|++....+++|||+|..|+.+.+.+++. ..+.+|||||+.++++.+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~----------------~~~~l~DtPG~i~~a~~~ 223 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG----------------RSFVMADLPGLIEGAHQG 223 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS----------------CEEEEEEHHHHHHHTTCT
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC----------------ceEEEecCCCCccccccc
Confidence 6999999999999999999998888899999999999999998763 568999999999888888
Q ss_pred cchhhHHHhhccccCEEEEEEeccc
Q psy2401 84 EGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 84 ~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.+++..|+.+++.+|+++||+|++.
T Consensus 224 ~~l~~~fl~~i~~~d~ll~VvD~s~ 248 (342)
T 1lnz_A 224 VGLGHQFLRHIERTRVIVHVIDMSG 248 (342)
T ss_dssp TTTHHHHHHHHHHCCEEEEEEESSC
T ss_pred chhHHHHHHHHHhccEEEEEEECCc
Confidence 8899999999999999999999964
No 8
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.80 E-value=1.3e-19 Score=178.20 Aligned_cols=157 Identities=30% Similarity=0.546 Sum_probs=117.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
..|+|+|+||||||||+++|++....++++|++|..|+.|.+.+++. ..+.++|+||+.++.+.
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~----------------~~~~l~DtpGli~~a~~ 221 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE----------------ERFTLADIPGIIEGASE 221 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS----------------CEEEEEECCCCCCCGGG
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc----------------ceEEEEeccccccchhh
Confidence 35899999999999999999998878899999999999999988752 46889999999887777
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
+.+++..++.++..+|.+++|+|++ . +|..++.....+
T Consensus 222 ~~~L~~~fl~~~era~~lL~vvDls-~----------~~~~~ls~g~~e------------------------------- 259 (416)
T 1udx_A 222 GKGLGLEFLRHIARTRVLLYVLDAA-D----------EPLKTLETLRKE------------------------------- 259 (416)
T ss_dssp SCCSCHHHHHHHTSSSEEEEEEETT-S----------CHHHHHHHHHHH-------------------------------
T ss_pred hhhhhHHHHHHHHHHHhhhEEeCCc-c----------CCHHHHHHHHHH-------------------------------
Confidence 7777778888888999999999984 1 122111111000
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhh-cccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFL-NLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLE 241 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~-~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e 241 (363)
+..+ ..+..+|.++++||.|.. ..+..+.+.+.+...+.+++++||+..
T Consensus 260 ----------------------------l~~la~aL~~~P~ILVlNKlDl~--~~~~~~~l~~~l~~~g~~vi~iSA~~g 309 (416)
T 1udx_A 260 ----------------------------VGAYDPALLRRPSLVALNKVDLL--EEEAVKALADALAREGLAVLPVSALTG 309 (416)
T ss_dssp ----------------------------HHHHCHHHHHSCEEEEEECCTTS--CHHHHHHHHHHHHTTTSCEEECCTTTC
T ss_pred ----------------------------HHHHhHHhhcCCEEEEEECCChh--hHHHHHHHHHHHHhcCCeEEEEECCCc
Confidence 0111 113568999999999964 235566676777667788999999965
Q ss_pred HHHhcC
Q psy2401 242 EEISDL 247 (363)
Q Consensus 242 ~~i~el 247 (363)
+++.++
T Consensus 310 ~gi~eL 315 (416)
T 1udx_A 310 AGLPAL 315 (416)
T ss_dssp TTHHHH
T ss_pred cCHHHH
Confidence 555444
No 9
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.77 E-value=7.8e-19 Score=162.31 Aligned_cols=87 Identities=32% Similarity=0.479 Sum_probs=72.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC-
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS- 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~- 81 (363)
.+|+++|.||||||||||+|+|....++++|++|.+...+.+.+++ ..+.+|||||+.....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~-----------------~~~~lvDtpG~~~~~~~ 64 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE-----------------HLIEITDLPGVYSLVAN 64 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT-----------------EEEEEEECCCCSSCC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC-----------------eEEEEEeCCCccccccc
Confidence 6899999999999999999999988899999999999999999988 6799999999977653
Q ss_pred -----cccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 -----KGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 -----~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
..+.+.+.++.. +.+|++++|+|++
T Consensus 65 ~~~~~~~e~i~~~~~~~-~~~d~vi~VvDas 94 (256)
T 3iby_A 65 AEGISQDEQIAAQSVID-LEYDCIINVIDAC 94 (256)
T ss_dssp ----CHHHHHHHHHHHH-SCCSEEEEEEEGG
T ss_pred ccCCCHHHHHHHHHHhh-CCCCEEEEEeeCC
Confidence 222233333322 7899999999995
No 10
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.76 E-value=1.1e-17 Score=158.15 Aligned_cols=89 Identities=29% Similarity=0.371 Sum_probs=71.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCc-cccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKI-SAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~-~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.+|+|+|+||||||||+|+|++... .+++.|+||.+...+.+..++ .++.+|||||+.+...
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~-----------------~~l~l~DTpG~~~~~~ 70 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR-----------------RQIVFVDTPGLHKPMD 70 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT-----------------EEEEEEECCCCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC-----------------cEEEEecCccccchhh
Confidence 4799999999999999999999865 478899999988888777666 7899999999876543
Q ss_pred c-ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 82 K-GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 82 ~-~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
. .+.+.......++.+|++++|+|+++
T Consensus 71 ~l~~~~~~~~~~~l~~ad~il~VvD~~~ 98 (301)
T 1wf3_A 71 ALGEFMDQEVYEALADVNAVVWVVDLRH 98 (301)
T ss_dssp HHHHHHHHHHHHHTSSCSEEEEEEETTS
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEECCC
Confidence 2 12233455678899999999999953
No 11
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.76 E-value=1.4e-17 Score=157.98 Aligned_cols=89 Identities=26% Similarity=0.386 Sum_probs=72.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc-ccCCCceeecceeEEEEeC-CccccccccccccccccceeEEEEeeecccCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS-AENYPFCTIEPNIGIIEVP-DKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~-~~~~p~~t~~~~~g~v~~~-~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
-.|+++|.||||||||+|+|++.... +++.|++|.....+....+ + .++.+|||||+.++.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~-----------------~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE-----------------AQIIFLDTPGIYEPK 73 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT-----------------EEEEEEECCCCCCCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC-----------------CeEEEEECcCCCccc
Confidence 46999999999999999999998644 7899999999999988887 6 789999999998654
Q ss_pred --Cc-ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 81 --SK-GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 81 --~~-~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.. ++.+.......++.+|++++|+|+++
T Consensus 74 ~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~ 104 (308)
T 3iev_A 74 KSDVLGHSMVEIAKQSLEEADVILFMIDATE 104 (308)
T ss_dssp TTCHHHHHHHHHHHHHHHHCSEEEEEEETTT
T ss_pred cchhHHHHHHHHHHHHhhcCCEEEEEEeCCC
Confidence 11 22333455677889999999999953
No 12
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.75 E-value=4.9e-18 Score=170.15 Aligned_cols=90 Identities=30% Similarity=0.412 Sum_probs=76.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeeccc-CC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLV-SG 79 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~-~~ 79 (363)
+++|+|+|+||||||||+|+|++.. +.++++|+||.++..+.+.+++ .++.+|||||+. .+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g-----------------~~~~l~DTaG~~~~~ 305 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG-----------------ILFRIVDTAGVRSET 305 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT-----------------EEEEEEESSCCCSSC
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC-----------------eEEEEEECCCccccc
Confidence 3689999999999999999999984 6689999999999999999988 679999999998 66
Q ss_pred CCcccchh-hHHHhhccccCEEEEEEeccc
Q psy2401 80 ASKGEGLG-NKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 80 ~~~~~~l~-~~~l~~~~~aD~il~Vvda~~ 108 (363)
....+.++ ...+.+++.+|++|+|+|+++
T Consensus 306 ~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~ 335 (482)
T 1xzp_A 306 NDLVERLGIERTLQEIEKADIVLFVLDASS 335 (482)
T ss_dssp CTTCCCCCHHHHHHHHHHCSEEEEEEETTS
T ss_pred hhhHHHHHHHHHHHHhhcccEEEEEecCCC
Confidence 55555443 345778899999999999853
No 13
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.75 E-value=2.3e-18 Score=160.63 Aligned_cols=89 Identities=31% Similarity=0.464 Sum_probs=71.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.++|+++|.+|||||||+|+|++....++++|++|.++..+.+.+.+ ..+.+|||||+.+...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~~ 65 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD-----------------HQVTLVDLPGTYSLTT 65 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS-----------------CEEEEEECCCCSCSCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC-----------------CceEEEECcCCCcccc
Confidence 47999999999999999999999988899999999999999999877 6789999999987553
Q ss_pred cc--cchhhHH---HhhccccCEEEEEEecc
Q psy2401 82 KG--EGLGNKF---LAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~~--~~l~~~~---l~~~~~aD~il~Vvda~ 107 (363)
.. ..+...+ ....+.+|++++|+|++
T Consensus 66 ~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~ 96 (274)
T 3i8s_A 66 ISSQTSLDEQIACHYILSGDADLLINVVDAS 96 (274)
T ss_dssp ----CCHHHHHHHHHHHHTCCSEEEEEEEGG
T ss_pred ccccCCHHHHHHHHHHhhcCCCEEEEEecCC
Confidence 21 1111121 22237899999999984
No 14
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.74 E-value=1.1e-17 Score=143.27 Aligned_cols=87 Identities=32% Similarity=0.511 Sum_probs=64.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.+|+++|++|||||||+|+|++....++++|++|.++..+.+.+++ ..+.+|||||+.+....
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~l~i~Dt~G~~~~~~~ 66 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-----------------EKFKVVDLPGVYSLTAN 66 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT-----------------EEEEEEECCCCSCSSSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC-----------------cEEEEEECCCcccCCCc
Confidence 6899999999999999999999877788899999999888888876 67999999998765322
Q ss_pred c--cchhhHHHhhccccCEEEEEEecc
Q psy2401 83 G--EGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~--~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. +.+...++. ...+|++++|+|++
T Consensus 67 ~~~~~~~~~~~~-~~~~~~~i~v~D~~ 92 (165)
T 2wji_A 67 SIDEIIARDYII-NEKPDLVVNIVDAT 92 (165)
T ss_dssp SHHHHHHHHHHH-HHCCSEEEEEEETT
T ss_pred chhHHHHHHHHh-cCCCCEEEEEecCC
Confidence 1 122223322 13799999999984
No 15
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.74 E-value=9.4e-18 Score=145.03 Aligned_cols=90 Identities=22% Similarity=0.291 Sum_probs=71.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
+.+|+++|+||||||||+|+|++.. ..++++|++|.+...+.+.+++ .++.+|||||+.+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~~ 66 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG-----------------MPLHIIDTAGLREAS 66 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT-----------------EEEEEEECCCCSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC-----------------eEEEEEECCCcccch
Confidence 4789999999999999999999875 3578899999999889999887 568999999986543
Q ss_pred Ccccch-hhHHHhhccccCEEEEEEeccc
Q psy2401 81 SKGEGL-GNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 81 ~~~~~l-~~~~l~~~~~aD~il~Vvda~~ 108 (363)
...+.. ....+..++.+|++++|+|++.
T Consensus 67 ~~~~~~~~~~~~~~~~~ad~~i~v~D~~~ 95 (172)
T 2gj8_A 67 DEVERIGIERAWQEIEQADRVLFMVDGTT 95 (172)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTT
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 322111 1223456799999999999953
No 16
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.73 E-value=2.5e-17 Score=141.72 Aligned_cols=83 Identities=23% Similarity=0.211 Sum_probs=65.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++........|+.+.+.....+.+++.. ..+.+|||||......
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 73 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEK---------------VKLQIWDTAGQERFRT- 73 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEE---------------EEEEEEEETTGGGCSS-
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEE---------------EEEEEEcCCCchhhhh-
Confidence 689999999999999999999987666677777777777788887743 6799999999755433
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 74 ------~~~~~~~~~d~~i~v~d~~ 92 (181)
T 3tw8_B 74 ------ITSTYYRGTHGVIVVYDVT 92 (181)
T ss_dssp ------CCGGGGTTCSEEEEEEETT
T ss_pred ------hHHHHhccCCEEEEEEECC
Confidence 2234568899999999985
No 17
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.73 E-value=4.7e-17 Score=142.27 Aligned_cols=153 Identities=20% Similarity=0.150 Sum_probs=104.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++........|+++.+.....+.+++.. ..+.+|||||......
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 80 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKT---------------IKLQIWDTAGQERFRT- 80 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEE---------------EEEEEEEECCSGGGCT-
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEE---------------EEEEEEECCCcHhhhh-
Confidence 689999999999999999999877666677777777777788887743 5799999999654332
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
.....++.+|++++|+|+.+..
T Consensus 81 ------~~~~~~~~~d~~i~v~d~~~~~---------------------------------------------------- 102 (196)
T 3tkl_A 81 ------ITSSYYRGAHGIIVVYDVTDQE---------------------------------------------------- 102 (196)
T ss_dssp ------THHHHHTTCSEEEEEEETTCHH----------------------------------------------------
T ss_pred ------hHHHHHhhCCEEEEEEECcCHH----------------------------------------------------
Confidence 3335568899999999985310
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
.++.+..|+. .+..+ ....+|+++++||.|.........+..+++....+.+++++||+...
T Consensus 103 -s~~~~~~~~~----------------~i~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (196)
T 3tkl_A 103 -SFNNVKQWLQ----------------EIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNAT 164 (196)
T ss_dssp -HHHTHHHHHH----------------HHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCT
T ss_pred -HHHHHHHHHH----------------HHHHh-cCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 0111111111 11111 11467999999999964212223345666677778899999999655
Q ss_pred HHhcC
Q psy2401 243 EISDL 247 (363)
Q Consensus 243 ~i~el 247 (363)
++.++
T Consensus 165 gv~~l 169 (196)
T 3tkl_A 165 NVEQS 169 (196)
T ss_dssp THHHH
T ss_pred CHHHH
Confidence 55444
No 18
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.72 E-value=8.5e-18 Score=156.70 Aligned_cols=87 Identities=24% Similarity=0.447 Sum_probs=69.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.++|+++|.||||||||||+|++....++++||+|.++..+.+.. + ..+.+|||||......
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~-----------------~~l~l~DtpG~~~~~~ 64 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-N-----------------KDLEIQDLPGIYSMSP 64 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-C-----------------TTEEEEECCCCSCSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-C-----------------CeEEEEECCCcCccCC
Confidence 468999999999999999999998888999999999988887655 4 6799999999876532
Q ss_pred c--ccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 K--GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~--~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. .+.+.+.++.. ..+|++++|+|++
T Consensus 65 ~~~~e~v~~~~~~~-~~~d~vi~V~D~t 91 (272)
T 3b1v_A 65 YSPEAKVARDYLLS-QRADSILNVVDAT 91 (272)
T ss_dssp SSHHHHHHHHHHHT-TCCSEEEEEEEGG
T ss_pred CChHHHHHHHHHhc-CCCCEEEEEecCC
Confidence 2 22233344432 4699999999984
No 19
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.72 E-value=6.1e-17 Score=140.41 Aligned_cols=152 Identities=18% Similarity=0.180 Sum_probs=98.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++... ...+++++.......+.+++.. ..+.+|||||......
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 67 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGET---------------CLLDILDTAGQEEYSA- 67 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCC---CT-
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEEEEECCcE---------------EEEEEEECCCcHHHHH-
Confidence 6899999999999999999998643 4455556655555666666643 5688999999655433
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
.....++.+|++++|+|+.+..
T Consensus 68 ------~~~~~~~~~~~~i~v~d~~~~~---------------------------------------------------- 89 (189)
T 4dsu_A 68 ------MRDQYMRTGEGFLCVFAINNTK---------------------------------------------------- 89 (189)
T ss_dssp ------THHHHHHHCSEEEEEEETTCHH----------------------------------------------------
T ss_pred ------HHHHHHhcCCEEEEEEECCCHH----------------------------------------------------
Confidence 2224457899999999985310
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
.++.+..++. .+..+......|+++++||.|.. ......+.++++....+.+++++||+...
T Consensus 90 -s~~~~~~~~~----------------~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 151 (189)
T 4dsu_A 90 -SFEDIHHYRE----------------QIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQ 151 (189)
T ss_dssp -HHHHHHHHHH----------------HHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCT
T ss_pred -HHHHHHHHHH----------------HHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 0111111111 11112122578999999999974 22334455666666667899999999655
Q ss_pred HHhcC
Q psy2401 243 EISDL 247 (363)
Q Consensus 243 ~i~el 247 (363)
++.++
T Consensus 152 gi~~l 156 (189)
T 4dsu_A 152 GVDDA 156 (189)
T ss_dssp THHHH
T ss_pred CHHHH
Confidence 55444
No 20
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.72 E-value=6.7e-17 Score=143.00 Aligned_cols=154 Identities=19% Similarity=0.166 Sum_probs=103.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++........|+.+.+.....+.+++.. ..+.+|||||.......
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~~ 73 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKT---------------VKLQIWDTAGQERFRTI 73 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEE---------------EEEEEECCTTTTTTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEE---------------EEEEEEeCCChHHHHHH
Confidence 699999999999999999999876665566766666666677777643 57999999997654432
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
....++.+|++++|+|+....
T Consensus 74 -------~~~~~~~~d~vilv~d~~~~~---------------------------------------------------- 94 (206)
T 2bcg_Y 74 -------TSSYYRGSHGIIIVYDVTDQE---------------------------------------------------- 94 (206)
T ss_dssp -------CGGGGTTCSEEEEEEETTCHH----------------------------------------------------
T ss_pred -------HHHhccCCCEEEEEEECcCHH----------------------------------------------------
Confidence 234568899999999985310
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
.++.+..|+. .+..+ .....|+++|+||.|.........+..+++....+.+++++||+...
T Consensus 95 -s~~~~~~~~~----------------~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 156 (206)
T 2bcg_Y 95 -SFNGVKMWLQ----------------EIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDST 156 (206)
T ss_dssp -HHHHHHHHHH----------------HHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCT
T ss_pred -HHHHHHHHHH----------------HHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 1111111111 11111 11467999999999974211223455666667778899999999766
Q ss_pred HHhcCC
Q psy2401 243 EISDLN 248 (363)
Q Consensus 243 ~i~el~ 248 (363)
++.++.
T Consensus 157 gi~~l~ 162 (206)
T 2bcg_Y 157 NVEDAF 162 (206)
T ss_dssp THHHHH
T ss_pred CHHHHH
Confidence 555543
No 21
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.72 E-value=3.1e-17 Score=162.89 Aligned_cols=88 Identities=33% Similarity=0.422 Sum_probs=62.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.+|+|+|.||||||||||+|++.. +.++++|++|.+...+.+.+.+ ..+.+|||||+.....
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~-----------------~~~~l~DT~G~~~~~~ 64 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG-----------------KTFKLVDTCGVFDNPQ 64 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT-----------------EEEEEEECTTTTSSGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC-----------------eEEEEEECCCcccccc
Confidence 579999999999999999999985 4589999999999999999988 6789999999875322
Q ss_pred c--ccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 K--GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~--~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. .+.+..+...+++.||++++|+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~ad~il~V~D~~ 92 (439)
T 1mky_A 65 DIISQKMKEVTLNMIREADLVLFVVDGK 92 (439)
T ss_dssp GCCCHHHHHHHHHHHTTCSEEEEEEETT
T ss_pred chHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 1 2234456677889999999999985
No 22
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.72 E-value=4.3e-17 Score=138.96 Aligned_cols=149 Identities=17% Similarity=0.122 Sum_probs=88.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|++|||||||+|++++........+..+.+.....+.+++.. ..+.+|||||.......
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~~~~~ 67 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEE---------------VTLIVYDIWEQGDAGGW 67 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEE---------------EEEEEECCCCC------
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeE---------------EEEEEEECCCccccchh
Confidence 689999999999999999999865554445555666666777777643 67899999998653321
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
+.. ..++.+|++++|+|+.+..
T Consensus 68 ---~~~---~~~~~~d~~i~v~d~~~~~---------------------------------------------------- 89 (169)
T 3q85_A 68 ---LQD---HCLQTGDAFLIVFSVTDRR---------------------------------------------------- 89 (169)
T ss_dssp -----C---HHHHHCSEEEEEEETTCHH----------------------------------------------------
T ss_pred ---hhh---hhhccCCEEEEEEECCChH----------------------------------------------------
Confidence 111 2346799999999985310
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLE 241 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e 241 (363)
.++.+..++. .+........+|+++++||.|.........+..++++...+.+++++||+..
T Consensus 90 -s~~~~~~~~~----------------~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (169)
T 3q85_A 90 -SFSKVPETLL----------------RLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALH 151 (169)
T ss_dssp -HHHTHHHHHH----------------HHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTT
T ss_pred -HHHHHHHHHH----------------HHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccC
Confidence 0111111111 0111111246899999999996421223345566677777889999999843
No 23
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=6.3e-17 Score=141.19 Aligned_cols=153 Identities=20% Similarity=0.135 Sum_probs=98.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++........|..+.+.....+.+++.. ..+.+|||||......
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 79 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNK---------------AKLAIWDTAGQERFRT- 79 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECSSGGGCC-
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeE---------------EEEEEEeCCCchhhhh-
Confidence 689999999999999999999876554444544444555566666543 6799999999654332
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
.....++.+|++++|+|+....
T Consensus 80 ------~~~~~~~~~d~ii~v~d~~~~~---------------------------------------------------- 101 (195)
T 1x3s_A 80 ------LTPSYYRGAQGVILVYDVTRRD---------------------------------------------------- 101 (195)
T ss_dssp ------SHHHHHTTCCEEEEEEETTCHH----------------------------------------------------
T ss_pred ------hhHHHhccCCEEEEEEECcCHH----------------------------------------------------
Confidence 2335568899999999985310
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
.++.+..|+. .+..+.....+|+++++||.|... .....+...+++...+.+++++||+...
T Consensus 102 -s~~~~~~~~~----------------~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (195)
T 1x3s_A 102 -TFVKLDNWLN----------------ELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCD 163 (195)
T ss_dssp -HHHTHHHHHH----------------HHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred -HHHHHHHHHH----------------HHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCC
Confidence 0011111111 111111124689999999999732 2223445666677778899999999544
Q ss_pred HHhcC
Q psy2401 243 EISDL 247 (363)
Q Consensus 243 ~i~el 247 (363)
++.++
T Consensus 164 gi~~l 168 (195)
T 1x3s_A 164 GVQCA 168 (195)
T ss_dssp THHHH
T ss_pred CHHHH
Confidence 44433
No 24
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.72 E-value=8e-17 Score=139.18 Aligned_cols=153 Identities=20% Similarity=0.140 Sum_probs=97.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++... ...++.++.......+.+++.. ..+.+|||||.......
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~~ 70 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKLITVNGQE---------------YHLQLVDTAGQDEYSIF 70 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCCCTTCCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEEEEEEECCEE---------------EEEEEEeCCCchhhhHH
Confidence 6899999999999999999996543 3444444444445566666643 57899999997665332
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
. ...++.+|++++|+|+.+..
T Consensus 71 ~-------~~~~~~~~~~i~v~d~~~~~---------------------------------------------------- 91 (181)
T 3t5g_A 71 P-------QTYSIDINGYILVYSVTSIK---------------------------------------------------- 91 (181)
T ss_dssp C-------GGGTTTCSEEEEEEETTCHH----------------------------------------------------
T ss_pred H-------HHHHhcCCEEEEEEECCCHH----------------------------------------------------
Confidence 2 24557899999999985310
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
.++.+..|+. .+........+|+++++||.|.........+..++++...+.+++++||+...
T Consensus 92 -s~~~~~~~~~----------------~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (181)
T 3t5g_A 92 -SFEVIKVIHG----------------KLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQ 154 (181)
T ss_dssp -HHHHHHHHHH----------------HHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHH
T ss_pred -HHHHHHHHHH----------------HHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCC
Confidence 1111111111 01101112468999999999964222223456677777788899999999766
Q ss_pred HHhcC
Q psy2401 243 EISDL 247 (363)
Q Consensus 243 ~i~el 247 (363)
++.++
T Consensus 155 ~v~~l 159 (181)
T 3t5g_A 155 TAVDV 159 (181)
T ss_dssp HHHHH
T ss_pred CHHHH
Confidence 65544
No 25
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.72 E-value=1.5e-17 Score=153.80 Aligned_cols=87 Identities=34% Similarity=0.524 Sum_probs=71.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|.||||||||+|+|++....++++|++|.+...+.+...+ ..+.+|||||.......
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~~~ 68 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG-----------------YTINLIDLPGTYSLGYS 68 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT-----------------EEEEEEECCCCSSCCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC-----------------eEEEEEECCCcCccCCC
Confidence 6899999999999999999999888899999999999988888876 68999999998765432
Q ss_pred c--cchhhHHHhhccccCEEEEEEecc
Q psy2401 83 G--EGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~--~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. +.+.+.++.. ..+|++++|+|++
T Consensus 69 ~~~e~v~~~~~~~-~~~d~ii~V~D~t 94 (258)
T 3a1s_A 69 SIDEKIARDYLLK-GDADLVILVADSV 94 (258)
T ss_dssp SHHHHHHHHHHHH-SCCSEEEEEEETT
T ss_pred CHHHHHHHHHHhh-cCCCEEEEEeCCC
Confidence 2 2233344432 6899999999985
No 26
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.72 E-value=3.3e-17 Score=139.52 Aligned_cols=83 Identities=24% Similarity=0.204 Sum_probs=59.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++........|..+.+.....+.+++.. ..+.+|||||......
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~~~~~- 67 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK---------------VKLQIWDTAGQERFRT- 67 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCE---------------EEEEEECCTTGGGTSC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEeCCCChhhhh-
Confidence 689999999999999999999876665566666666666667776643 6799999999765433
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 68 ------~~~~~~~~~d~~i~v~d~~ 86 (170)
T 1g16_A 68 ------ITTAYYRGAMGIILVYDIT 86 (170)
T ss_dssp ------CCHHHHTTEEEEEEEEETT
T ss_pred ------hHHHHhccCCEEEEEEECC
Confidence 2234558899999999985
No 27
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.72 E-value=3.2e-17 Score=146.79 Aligned_cols=88 Identities=25% Similarity=0.240 Sum_probs=66.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC--ccccCCCceeecceeEEEE-eCCccccccccccccccccceeEEEEeeecccCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK--ISAENYPFCTIEPNIGIIE-VPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSG 79 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~--~~~~~~p~~t~~~~~g~v~-~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
.+|+++|.+|||||||+|+|++.. ..++++|++|.......+. ..+ ..+.+|||||+...
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~ 92 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAE-----------------PVAHLVDLPGYGYA 92 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTS-----------------CSEEEEECCCCCSS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCC-----------------CcEEEEcCCCCCcc
Confidence 689999999999999999999985 4688889988877655554 223 57899999998654
Q ss_pred CCcc------cchhhHHHhhccccCEEEEEEecc
Q psy2401 80 ASKG------EGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 80 ~~~~------~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.... ..+...++.....+|++++|+|+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~ 126 (223)
T 4dhe_A 93 EVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDAR 126 (223)
T ss_dssp CCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETT
T ss_pred cCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCC
Confidence 2221 123345566666699999999985
No 28
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.71 E-value=5.6e-17 Score=137.00 Aligned_cols=88 Identities=30% Similarity=0.412 Sum_probs=63.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCc-cccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKI-SAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~-~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
++|+++|++|||||||+|++++... ..+++|++|.++....+.+++ ..+.+|||||......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~~~ 64 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR-----------------GRFLLVDTGGLWSGDK 64 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT-----------------EEEEEEECGGGCSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC-----------------ceEEEEECCCCCCccc
Confidence 6899999999999999999998754 367888889888888888877 6789999999876543
Q ss_pred cccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
....+.......++.+|++++|+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~i~v~d~~ 90 (161)
T 2dyk_A 65 WEKKIQEKVDRALEDAEVVLFAVDGR 90 (161)
T ss_dssp CCHHHHHHHHHHTTTCSEEEEEEESS
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 22233345566789999999999985
No 29
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.71 E-value=7e-17 Score=137.61 Aligned_cols=83 Identities=20% Similarity=0.114 Sum_probs=58.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|++++........|..+.+.....+.+++.. ..+.+|||||..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~- 70 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKR---------------VNLAIWDTAGQERFHA- 70 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCE---------------EEEEEEECCCC------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEE---------------EEEEEEECCCcHhhhh-
Confidence 689999999999999999999876554455554544555566666543 6789999999654332
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 71 ------~~~~~~~~~d~~i~v~d~~ 89 (170)
T 1z08_A 71 ------LGPIYYRDSNGAILVYDIT 89 (170)
T ss_dssp --------CCSSTTCSEEEEEEETT
T ss_pred ------hHHHHhccCCEEEEEEECc
Confidence 2224568899999999985
No 30
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.71 E-value=7.3e-17 Score=139.87 Aligned_cols=153 Identities=18% Similarity=0.158 Sum_probs=102.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++........|..+.+.....+.+++.. ..+.+|||||....
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~--- 72 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKY---------------VKLQIWDTAGQERF--- 72 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEE---------------EEEEEEEECCSGGG---
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEE---------------EEEEEEeCCCcHHH---
Confidence 689999999999999999999876665566666666666667776643 57999999996432
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
.......++.+|++++|+|+++..
T Consensus 73 ----~~~~~~~~~~~d~~i~v~d~~~~~---------------------------------------------------- 96 (186)
T 2bme_A 73 ----RSVTRSYYRGAAGALLVYDITSRE---------------------------------------------------- 96 (186)
T ss_dssp ----HHHHHTTSTTCSEEEEEEETTCHH----------------------------------------------------
T ss_pred ----HHHHHHHHhcCCEEEEEEECcCHH----------------------------------------------------
Confidence 224556778999999999985310
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
.++.+..|+. .+..+ .....|+++++||.|.........++.++++...+.+++++||+...
T Consensus 97 -s~~~~~~~~~----------------~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (186)
T 2bme_A 97 -TYNALTNWLT----------------DARML-ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGE 158 (186)
T ss_dssp -HHHTHHHHHH----------------HHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred -HHHHHHHHHH----------------HHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCC
Confidence 0111111111 01111 11467999999999974211222345666677778899999999665
Q ss_pred HHhcC
Q psy2401 243 EISDL 247 (363)
Q Consensus 243 ~i~el 247 (363)
++.++
T Consensus 159 gi~~l 163 (186)
T 2bme_A 159 NVEEA 163 (186)
T ss_dssp THHHH
T ss_pred CHHHH
Confidence 55544
No 31
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.71 E-value=9.3e-17 Score=136.47 Aligned_cols=81 Identities=21% Similarity=0.113 Sum_probs=46.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
.+||+++|++|||||||+|++++.. ....+.++++.. ..+.+++.. ..+.+|||||...+.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~---------------~~~~i~D~~g~~~~~ 63 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEE---------------ASLMVYDIWEQDGGR 63 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEE---------------EEEEEEECC------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEE---------------EEEEEEECCCCccch
Confidence 3799999999999999999999864 334555555543 334555533 678999999976543
Q ss_pred CcccchhhHHHhhccccCEEEEEEecc
Q psy2401 81 SKGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 81 ~~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. .....++.+|++++|+|+.
T Consensus 64 ~-------~~~~~~~~~~~~i~v~d~~ 83 (166)
T 3q72_A 64 W-------LPGHCMAMGDAYVIVYSVT 83 (166)
T ss_dssp ----------------CCEEEEEEETT
T ss_pred h-------hhhhhhhhCCEEEEEEECC
Confidence 3 2224458899999999985
No 32
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.71 E-value=5.9e-17 Score=137.28 Aligned_cols=82 Identities=20% Similarity=0.139 Sum_probs=57.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++... ...++.++.......+.+++.. ..+.+|||||.....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~~~~-- 66 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEE---------------VQIDILDTAGQEDYA-- 66 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCC---CH--
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEEEEECCEE---------------EEEEEEECCCcchhH--
Confidence 6899999999999999999998653 2344444444444455565532 579999999964322
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
......++.+|++++|+|+.
T Consensus 67 -----~~~~~~~~~~d~~i~v~d~~ 86 (168)
T 1u8z_A 67 -----AIRDNYFRSGEGFLCVFSIT 86 (168)
T ss_dssp -----HHHHHHHHHCSEEEEEEETT
T ss_pred -----HHHHHHhhcCCEEEEEEECC
Confidence 23334568899999999985
No 33
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.71 E-value=1.3e-16 Score=137.55 Aligned_cols=161 Identities=16% Similarity=0.062 Sum_probs=104.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++........|..+.+.....+.+++.. ..+.+|||||......
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 76 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDAT---------------VKFEIWDTAGQERYHS- 76 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEE---------------EEEEEEECCCSGGGGG-
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEE---------------EEEEEEeCCCChhhhh-
Confidence 689999999999999999999875554444544444445556665533 6799999999643222
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
.....++.+|++++|+|+++..
T Consensus 77 ------~~~~~~~~~d~~i~v~d~~~~~---------------------------------------------------- 98 (181)
T 2efe_B 77 ------LAPMYYRGAAAAIIVFDVTNQA---------------------------------------------------- 98 (181)
T ss_dssp ------GTHHHHTTCSEEEEEEETTCHH----------------------------------------------------
T ss_pred ------hhHHHhccCCEEEEEEECCCHH----------------------------------------------------
Confidence 2334568899999999985310
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
.++.+..|+. .+... .....|+++++||.|.........+.+++++...+.+++++||+
T Consensus 99 -s~~~~~~~~~----------------~~~~~-~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--- 157 (181)
T 2efe_B 99 -SFERAKKWVQ----------------ELQAQ-GNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAK--- 157 (181)
T ss_dssp -HHHHHHHHHH----------------HHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSS---
T ss_pred -HHHHHHHHHH----------------HHHHh-cCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECC---
Confidence 0111111111 01111 11367999999999974211223456677777788899999998
Q ss_pred HHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhC
Q psy2401 243 EISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLL 277 (363)
Q Consensus 243 ~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l 277 (363)
+..+++++.+.+.+.+
T Consensus 158 -------------------~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 158 -------------------TATNVKEIFYEIARRL 173 (181)
T ss_dssp -------------------SCTTHHHHHHHHHHTC
T ss_pred -------------------CCCCHHHHHHHHHHHH
Confidence 4567777777666654
No 34
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.71 E-value=8e-17 Score=138.25 Aligned_cols=83 Identities=19% Similarity=0.188 Sum_probs=63.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++........|..+.+.....+.+++.. ..+.+|||||......
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~Dt~G~~~~~~- 78 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQERFRS- 78 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCSGGGGG-
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeE---------------EEEEEEECCCcHHHHH-
Confidence 589999999999999999999876655556666666666777777643 5799999999644322
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 79 ------~~~~~~~~~d~~i~v~d~~ 97 (179)
T 2y8e_A 79 ------LIPSYIRDSTVAVVVYDIT 97 (179)
T ss_dssp ------GSHHHHHTCSEEEEEEETT
T ss_pred ------HHHHHhcCCCEEEEEEECC
Confidence 2334568899999999984
No 35
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=8.8e-17 Score=138.45 Aligned_cols=83 Identities=18% Similarity=0.176 Sum_probs=58.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc-ccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS-AENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~-~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
++|+++|++|||||||+|+|++.... ....|.++.+.....+.+++.. ..+.+|||||......
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~~~Dt~G~~~~~~ 75 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVK---------------VKLQMWDTAGQERFRS 75 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEE---------------EEEEEEECCCC-----
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEE---------------EEEEEEeCCCcHHHHH
Confidence 68999999999999999999987553 2334544555545555666633 5799999999654332
Q ss_pred cccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 76 -------~~~~~~~~~d~ii~v~d~~ 94 (180)
T 2g6b_A 76 -------VTHAYYRDAHALLLLYDVT 94 (180)
T ss_dssp ----------CCGGGCSEEEEEEETT
T ss_pred -------HHHHHccCCCEEEEEEECC
Confidence 3345668899999999985
No 36
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.71 E-value=7.2e-17 Score=140.28 Aligned_cols=92 Identities=17% Similarity=0.128 Sum_probs=59.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecce-eEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPN-IGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~-~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
++|+++|++|||||||+|+|++........|....+.. ...+.+++..... . .......+.+|||||...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~l~Dt~G~~~--- 82 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGA----V--GRGQRIHLQLWDTAGLER--- 82 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCS----S--CCCEEEEEEEEEECCSGG---
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccc----c--ccCcEEEEEEEeCCCcHH---
Confidence 68999999999999999999986544333333222222 2344444321000 0 000025799999999743
Q ss_pred cccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+.......++.+|++++|+|++
T Consensus 83 ----~~~~~~~~~~~~d~~i~v~d~~ 104 (195)
T 3bc1_A 83 ----FRSLTTAFFRDAMGFLLLFDLT 104 (195)
T ss_dssp ----GHHHHHHTTTTCSEEEEEEETT
T ss_pred ----HHHHHHHHHcCCCEEEEEEECC
Confidence 2234556778999999999985
No 37
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=99.71 E-value=5.5e-18 Score=129.64 Aligned_cols=77 Identities=23% Similarity=0.254 Sum_probs=68.5
Q ss_pred HHHhCCCEEEEeCC----CCceEEEee-cCCCCHHHhhhhhhcchhcccEEEEEecccccccccChhhHhhcCceeecCC
Q psy2401 273 SFSLLDLRTYFTVG----KKEIRAWTI-PNGTTAEQAAGIIHTDIKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGK 347 (363)
Q Consensus 273 ~~~~l~li~~ft~g----~~e~raw~~-~~g~ta~~~A~~IHsD~~~gfi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk 347 (363)
.|+.|+||+|||+. ||...|.++ ++|+|+.|+|.+||+||.+.|.+|.||+. +||..| +|+ |.
T Consensus 5 ~~~~L~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~----------saK~~~-qrV-gl 72 (93)
T 2eki_A 5 SSGYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGL----------SVKHNP-QKV-GK 72 (93)
T ss_dssp SSSSCCEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBST----------TSSSSS-EEE-CS
T ss_pred ChhhcCeEEEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEecc----------cccCCC-EEC-CC
Confidence 37899999999963 366789999 99999999999999999999999999975 688765 777 99
Q ss_pred CeeeeCCCEEEEEe
Q psy2401 348 KYLVEDGDILNFLF 361 (363)
Q Consensus 348 ~y~v~dgdii~~~f 361 (363)
+|+|+|||||+|-.
T Consensus 73 dh~L~d~DVV~Iv~ 86 (93)
T 2eki_A 73 DHTLEDEDVIQIVK 86 (93)
T ss_dssp SCCCCSSEEECEEE
T ss_pred CcEecCCCEEEEEe
Confidence 99999999999864
No 38
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.70 E-value=1.5e-16 Score=134.92 Aligned_cols=82 Identities=17% Similarity=0.118 Sum_probs=56.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|.+|||||||+|+|++..... .++.++.......+.+++.. ..+.+|||||......
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~~~~~- 66 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVE-KYDPTIEDSYRKQVEVDCQQ---------------CMLEILDTAGTEQFTA- 66 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCC-SCCCCSEEEEEEEEESSSCE---------------EEEEEEEECSSCSSTT-
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCCccceEEEEEEECCEE---------------EEEEEEECCChHHHHH-
Confidence 689999999999999999999864332 23222222223344444432 6799999999765433
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 67 ------~~~~~~~~~d~~i~v~d~~ 85 (167)
T 1c1y_A 67 ------MRDLYMKNGQGFALVYSIT 85 (167)
T ss_dssp ------HHHHHHHHCSEEEEEEETT
T ss_pred ------HHHHHhccCCEEEEEEECC
Confidence 2234457899999999985
No 39
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.70 E-value=5.8e-17 Score=137.68 Aligned_cols=83 Identities=20% Similarity=0.143 Sum_probs=61.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++........|..+.+.....+.+++.. ..+.+|||||......
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~- 69 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDED---------------VRLMLWDTAGQEEFDA- 69 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEE---------------EEEEEECCTTGGGTTC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEE---------------EEEEEEcCCCcHhHHH-
Confidence 689999999999999999999875544444544455555666666533 6799999999765433
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 70 ------~~~~~~~~~d~~i~v~d~~ 88 (168)
T 1z2a_A 70 ------ITKAYYRGAQACVLVFSTT 88 (168)
T ss_dssp ------CCHHHHTTCCEEEEEEETT
T ss_pred ------HHHHHhcCCCEEEEEEECc
Confidence 2234557899999999985
No 40
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.70 E-value=1.5e-16 Score=135.28 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=60.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++........|..+.+.....+.+++.. ..+.+|||||.....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~~~~~-- 66 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHT---------------VKFEIWDTAGQERFA-- 66 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEE---------------EEEEEEEECCSGGGG--
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCChhhh--
Confidence 689999999999999999999875544444544444555566666533 579999999964322
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
......++.+|++++|+|++
T Consensus 67 -----~~~~~~~~~~d~~i~v~d~~ 86 (170)
T 1ek0_A 67 -----SLAPXYYRNAQAALVVYDVT 86 (170)
T ss_dssp -----GGHHHHHTTCSEEEEEEETT
T ss_pred -----hhhhhhhccCcEEEEEEecC
Confidence 23345568899999999985
No 41
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.70 E-value=2e-16 Score=134.48 Aligned_cols=83 Identities=19% Similarity=0.078 Sum_probs=57.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++........|..+.......+.+++.. ..+.+|||||.....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~~~~~-- 69 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTT---------------VKFEIWDTAGQERYH-- 69 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEE---------------EEEEEEEECCSGGGG--
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEE---------------EEEEEEeCCCcHHhh--
Confidence 689999999999999999999764432222322222233344555432 679999999965322
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
......++.+|++++|+|++
T Consensus 70 -----~~~~~~~~~~d~~i~v~d~~ 89 (170)
T 1r2q_A 70 -----SLAPMYYRGAQAAIVVYDIT 89 (170)
T ss_dssp -----GGHHHHHTTCSEEEEEEETT
T ss_pred -----hhhHHhccCCCEEEEEEECC
Confidence 23345568899999999985
No 42
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.70 E-value=1.5e-16 Score=136.71 Aligned_cols=83 Identities=20% Similarity=0.157 Sum_probs=60.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++........|..+.+.....+.+++.. ..+.+|||||....
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~--- 69 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHF---------------VTMQIWDTAGQERF--- 69 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEE---------------EEEEEEECCCCGGG---
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEE---------------EEEEEEeCCCchhh---
Confidence 689999999999999999999876555555555555555666666643 57999999995432
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.......++.+|++++|+|+.
T Consensus 70 ----~~~~~~~~~~~~~~i~v~d~~ 90 (177)
T 1wms_A 70 ----RSLRTPFYRGSDCCLLTFSVD 90 (177)
T ss_dssp ----HHHHGGGGTTCSEEEEEEETT
T ss_pred ----hhhHHHHHhcCCEEEEEEECc
Confidence 223345668899999999985
No 43
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.70 E-value=1.3e-16 Score=135.06 Aligned_cols=82 Identities=22% Similarity=0.152 Sum_probs=56.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|++++..... .++.++.......+.+++.. ..+.+|||||.....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~~~~-- 65 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIE-KYDPTIEDFYRKEIEVDSSP---------------SVLEILDTAGTEQFA-- 65 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCTTCCH--
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcc-cCCCCcceeEEEEEEECCEE---------------EEEEEEECCCchhhH--
Confidence 699999999999999999999764332 23333333334455555532 568999999964322
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
......++.+|++++|+|+.
T Consensus 66 -----~~~~~~~~~~~~~i~v~d~~ 85 (167)
T 1kao_A 66 -----SMRDLYIKNGQGFILVYSLV 85 (167)
T ss_dssp -----HHHHHHHHHCSEEEEEEETT
T ss_pred -----HHHHHHhccCCEEEEEEeCC
Confidence 12334568899999999985
No 44
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.70 E-value=1.2e-16 Score=139.43 Aligned_cols=83 Identities=19% Similarity=0.140 Sum_probs=59.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++........|..+.+.....+.+.+.. ..+.+|||||......
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~- 86 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKR---------------IKLQIWDTAGQERYRT- 86 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEE---------------EEEEEEECCSCCSSCC-
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeE---------------EEEEEEeCCCcHHHhh-
Confidence 689999999999999999999875543333433333334445555432 6799999999755433
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 87 ------~~~~~~~~~d~ii~v~d~~ 105 (189)
T 2gf9_A 87 ------ITTAYYRGAMGFLLMYDIA 105 (189)
T ss_dssp ------SGGGGGTTCSEEEEEEETT
T ss_pred ------hHHHhccCCCEEEEEEECC
Confidence 2335568899999999984
No 45
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.70 E-value=1.3e-16 Score=137.92 Aligned_cols=151 Identities=17% Similarity=0.113 Sum_probs=96.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++... ...++.++.......+.+++.. ..+.+|||||.....
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~-- 80 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEE---------------VQIDILDTAGQEDYA-- 80 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCTTCCH--
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEEEEECCEE---------------EEEEEEECCCCcccH--
Confidence 6899999999999999999998653 3344444444444455665532 578999999965322
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
......++.+|++++|+|+.+..
T Consensus 81 -----~~~~~~~~~~d~~i~v~d~~~~~---------------------------------------------------- 103 (187)
T 2a9k_A 81 -----AIRDNYFRSGEGFLCVFSITEME---------------------------------------------------- 103 (187)
T ss_dssp -----HHHHHHHHHCSEEEEEEETTCHH----------------------------------------------------
T ss_pred -----HHHHHHhccCCEEEEEEECcCHH----------------------------------------------------
Confidence 23345568899999999985210
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
.++.+..|+. .+..+.....+|+++++||.|.........+.+++++...+.+++++||+...
T Consensus 104 -s~~~~~~~~~----------------~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (187)
T 2a9k_A 104 -SFAATADFRE----------------QILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRA 166 (187)
T ss_dssp -HHHHHHHHHH----------------HHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred -HHHHHHHHHH----------------HHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCC
Confidence 0111111111 01111112468999999999964211223456677777788899999999544
Q ss_pred HHh
Q psy2401 243 EIS 245 (363)
Q Consensus 243 ~i~ 245 (363)
++.
T Consensus 167 gi~ 169 (187)
T 2a9k_A 167 NVD 169 (187)
T ss_dssp THH
T ss_pred CHH
Confidence 443
No 46
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=3.1e-16 Score=137.43 Aligned_cols=159 Identities=16% Similarity=0.079 Sum_probs=101.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc--ccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS--AENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~--~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
++|+++|.+|||||||+|+|++.... ..+.++++. ....+.+++.. ..+.+|||||.....
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~ 86 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASF--MTKTVPCGNEL---------------HKFLIWDTAGQERFH 86 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEE--EEEEEECSSSE---------------EEEEEEEECCSGGGG
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeE--EEEEEEeCCEE---------------EEEEEEcCCCchhhH
Confidence 68999999999999999999987533 333333332 23344444432 679999999964432
Q ss_pred CcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHH
Q psy2401 81 SKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIE 160 (363)
Q Consensus 81 ~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~ 160 (363)
. .....++.+|++++|+|+.+..
T Consensus 87 ~-------~~~~~~~~~d~iilV~d~~~~~-------------------------------------------------- 109 (192)
T 2fg5_A 87 S-------LAPMYYRGSAAAVIVYDITKQD-------------------------------------------------- 109 (192)
T ss_dssp G-------GTHHHHTTCSEEEEEEETTCTH--------------------------------------------------
T ss_pred h-------hhHHhhccCCEEEEEEeCCCHH--------------------------------------------------
Confidence 2 2334568899999999985311
Q ss_pred HHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHH
Q psy2401 161 LLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKL 240 (363)
Q Consensus 161 ~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~ 240 (363)
.++.+..|+. .+... .....|+++++||.|.........+.+++++...+.+++++||+
T Consensus 110 ---s~~~~~~~~~----------------~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~- 168 (192)
T 2fg5_A 110 ---SFYTLKKWVK----------------ELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAK- 168 (192)
T ss_dssp ---HHHHHHHHHH----------------HHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTT-
T ss_pred ---HHHHHHHHHH----------------HHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCC-
Confidence 0111111111 11111 11467999999999974211223566777777788899999998
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhC
Q psy2401 241 EEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLL 277 (363)
Q Consensus 241 e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l 277 (363)
+..+++++.+.+.+.+
T Consensus 169 ---------------------~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 169 ---------------------NAINIEELFQGISRQI 184 (192)
T ss_dssp ---------------------TTBSHHHHHHHHHHTC
T ss_pred ---------------------CCcCHHHHHHHHHHHH
Confidence 4566777777666654
No 47
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=1.1e-16 Score=142.07 Aligned_cols=83 Identities=20% Similarity=0.216 Sum_probs=64.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|.+|||||||+|+|++........|+.+.+.....+.+++.. ..+.+|||||...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~~---- 87 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK---------------VKLQIWDTAGQER---- 87 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCSGG----
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCcHH----
Confidence 689999999999999999999876655555655556666677777643 6799999999643
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+.......++.+|++++|+|++
T Consensus 88 ---~~~~~~~~~~~~d~~i~v~D~~ 109 (201)
T 2ew1_A 88 ---FRSITQSYYRSANALILTYDIT 109 (201)
T ss_dssp ---GHHHHGGGSTTCSEEEEEEETT
T ss_pred ---HHHHHHHHHhcCCEEEEEEECC
Confidence 2224456678999999999985
No 48
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.70 E-value=1.8e-16 Score=136.00 Aligned_cols=83 Identities=25% Similarity=0.200 Sum_probs=59.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|.+|||||||+|+|++........|..+.+.....+.+++.. ..+.+|||||.....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~-- 78 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK---------------IKLQIWDTAGQERFR-- 78 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEE---------------EEEEEEECTTGGGTC--
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeE---------------EEEEEEECCCChHhh--
Confidence 689999999999999999999865433323333333334455555532 679999999965432
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
......++.+|++++|+|+.
T Consensus 79 -----~~~~~~~~~~d~~i~v~d~~ 98 (179)
T 1z0f_A 79 -----AVTRSYYRGAAGALMVYDIT 98 (179)
T ss_dssp -----HHHHHHHHTCSEEEEEEETT
T ss_pred -----hhHHHHhccCCEEEEEEeCc
Confidence 24445668899999999985
No 49
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.70 E-value=8.5e-17 Score=140.42 Aligned_cols=84 Identities=20% Similarity=0.186 Sum_probs=61.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|.+|||||||+|+|++........|..+.+.....+.+++.. ..+.+|||||......
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~- 84 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGER---------------IKIQLWDTAGQERFRK- 84 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEE---------------EEEEEEECCCSHHHHT-
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEE---------------EEEEEEECCCchhhhh-
Confidence 689999999999999999999876554445555555555666776643 6799999999643210
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
......++.+|++++|+|++
T Consensus 85 -----~~~~~~~~~~d~iilv~D~~ 104 (189)
T 1z06_A 85 -----SMVQHYYRNVHAVVFVYDMT 104 (189)
T ss_dssp -----TTHHHHHTTCCEEEEEEETT
T ss_pred -----hhhHHHhcCCCEEEEEEECc
Confidence 12234568899999999985
No 50
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.69 E-value=2.8e-16 Score=132.62 Aligned_cols=82 Identities=16% Similarity=0.134 Sum_probs=56.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++.... ..++.++.......+.+++.. ..+.+|||||..+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~~~~~~- 66 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV-DECDPTIEDSYRKQVVIDGET---------------CLLDILDTAGQEEYSA- 66 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCCSSCCH-
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc-cccCCccceEEEEEEEECCEE---------------EEEEEEECCCchhhhH-
Confidence 68999999999999999999986432 223333333333445555432 5689999999654322
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 67 ------~~~~~~~~~~~~i~v~d~~ 85 (166)
T 2ce2_X 67 ------MRDQYMRTGEGFLCVFAIN 85 (166)
T ss_dssp ------HHHHHHHHCSEEEEEEETT
T ss_pred ------HHHHhhccCCEEEEEEECC
Confidence 2334557899999999984
No 51
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.69 E-value=2.2e-16 Score=135.77 Aligned_cols=82 Identities=20% Similarity=0.148 Sum_probs=59.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|.+|||||||+|+|++... ..+++.++.......+.+++.. ..+.+|||||......
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~~Dt~G~~~~~~- 72 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTIEDSYTKICSVDGIP---------------ARLDILDTAGQEEFGA- 72 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-CSSCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCTTTTSC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-ccccCCCcCceEEEEEEECCEE---------------EEEEEEECCCchhhHH-
Confidence 6899999999999999999998633 3445544444444556666532 5789999999765432
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+. ...++.+|++++|+|+.
T Consensus 73 ---~~---~~~~~~~d~~i~v~d~~ 91 (181)
T 2fn4_A 73 ---MR---EQYMRAGHGFLLVFAIN 91 (181)
T ss_dssp ---CH---HHHHHHCSEEEEEEETT
T ss_pred ---HH---HHHHhhCCEEEEEEeCC
Confidence 22 23457899999999985
No 52
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=140.55 Aligned_cols=153 Identities=17% Similarity=0.116 Sum_probs=98.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++... ...+++++.......+.+++.. ..+.+|||||.....
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~-- 76 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEE---------------VQIDILDTAGQEDYA-- 76 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCTTCCH--
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEECCEE---------------EEEEEEcCCChhhhH--
Confidence 6899999999999999999998653 3455555555445566666633 579999999964422
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
......++.+|++++|+|+....
T Consensus 77 -----~~~~~~~~~~~~~i~v~d~~~~~---------------------------------------------------- 99 (206)
T 2bov_A 77 -----AIRDNYFRSGEGFLCVFSITEME---------------------------------------------------- 99 (206)
T ss_dssp -----HHHHHHHHHCSEEEEEEETTCHH----------------------------------------------------
T ss_pred -----HHHHHHHhhCCEEEEEEECCCHH----------------------------------------------------
Confidence 23334568899999999985310
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
.++.+..|+. .+..+.....+|+++++||.|.........+.+.+++...+.+++++||+...
T Consensus 100 -s~~~~~~~~~----------------~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 162 (206)
T 2bov_A 100 -SFAATADFRE----------------QILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRA 162 (206)
T ss_dssp -HHHHHHHHHH----------------HHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCT
T ss_pred -HHHHHHHHHH----------------HHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCC
Confidence 0111111111 11111112478999999999964211223456666666677899999999766
Q ss_pred HHhcC
Q psy2401 243 EISDL 247 (363)
Q Consensus 243 ~i~el 247 (363)
++.++
T Consensus 163 gi~~l 167 (206)
T 2bov_A 163 NVDKV 167 (206)
T ss_dssp THHHH
T ss_pred CHHHH
Confidence 55554
No 53
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.69 E-value=1.4e-16 Score=140.49 Aligned_cols=153 Identities=16% Similarity=0.103 Sum_probs=97.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++........|..+.+.....+.+++.. ..+.+|||||....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~--- 70 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKR---------------IKLQIWDTAGLERY--- 70 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCSGGG---
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeE---------------EEEEEEECCCchhh---
Confidence 689999999999999999999875443333433333334455555432 67999999997432
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
.......++.+|++++|+|+....
T Consensus 71 ----~~~~~~~~~~~d~ii~v~d~~~~~---------------------------------------------------- 94 (203)
T 1zbd_A 71 ----RTITTAYYRGAMGFILMYDITNEE---------------------------------------------------- 94 (203)
T ss_dssp ----HHHHHTTGGGCSEEEEEEETTCHH----------------------------------------------------
T ss_pred ----cchHHHhhcCCCEEEEEEECcCHH----------------------------------------------------
Confidence 224456678999999999985310
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
.++.+..|+. .+..+ ....+|+++++||.|.........+.+++++...+.+++++||+...
T Consensus 95 -s~~~~~~~~~----------------~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (203)
T 1zbd_A 95 -SFNAVQDWST----------------QIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNI 156 (203)
T ss_dssp -HHHHHHHHHH----------------HHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred -HHHHHHHHHH----------------HHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCC
Confidence 0111111111 11111 12468999999999974211223445566666667899999999665
Q ss_pred HHhcC
Q psy2401 243 EISDL 247 (363)
Q Consensus 243 ~i~el 247 (363)
++.++
T Consensus 157 gi~~l 161 (203)
T 1zbd_A 157 NVKQT 161 (203)
T ss_dssp SSHHH
T ss_pred CHHHH
Confidence 55443
No 54
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.69 E-value=7e-17 Score=138.83 Aligned_cols=84 Identities=18% Similarity=0.188 Sum_probs=61.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++........|..+.+.....+.+++.. ...+.+|||||......
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~--------------~~~~~~~Dt~G~~~~~~- 71 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNL--------------NVTLQIWDIGGQTIGGK- 71 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTE--------------EEEEEEEECTTCCTTCT-
T ss_pred EEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCC--------------EEEEEEEECCCCccccc-
Confidence 689999999999999999999865433333433445556667776521 16799999999755433
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 72 ------~~~~~~~~~d~~i~v~d~~ 90 (178)
T 2hxs_A 72 ------MLDKYIYGAQGVLLVYDIT 90 (178)
T ss_dssp ------THHHHHTTCSEEEEEEETT
T ss_pred ------hhhHHHhhCCEEEEEEECC
Confidence 2334568899999999985
No 55
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.69 E-value=3.3e-17 Score=141.83 Aligned_cols=153 Identities=18% Similarity=0.115 Sum_probs=77.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+++|++........|+.+.+.....+.+++.. ..+.+|||||......
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~- 72 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERFRT- 72 (183)
T ss_dssp EEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEE---------------EEEEEEEC---------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEE---------------EEEEEEcCCCChhhhh-
Confidence 689999999999999999999865554455555555555666776643 6799999999765433
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
.....++.+|++++|+|+++..
T Consensus 73 ------~~~~~~~~~d~~i~v~d~~~~~---------------------------------------------------- 94 (183)
T 2fu5_C 73 ------ITTAYYRGAMGIMLVYDITNEK---------------------------------------------------- 94 (183)
T ss_dssp -------CCTTTTTCSEEEEEEETTCHH----------------------------------------------------
T ss_pred ------hHHHHHhcCCEEEEEEECcCHH----------------------------------------------------
Confidence 2224568899999999985310
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
.++.+..|+. .+... .....|+++++||.|.........+.+++++...+.+++++||+...
T Consensus 95 -s~~~~~~~~~----------------~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (183)
T 2fu5_C 95 -SFDNIRNWIR----------------NIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANI 156 (183)
T ss_dssp -HHHHHHHHHH----------------HHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---C
T ss_pred -HHHHHHHHHH----------------HHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 1111112211 01111 11467999999999974211223455666666678899999999665
Q ss_pred HHhcC
Q psy2401 243 EISDL 247 (363)
Q Consensus 243 ~i~el 247 (363)
++.++
T Consensus 157 ~i~~l 161 (183)
T 2fu5_C 157 NVENA 161 (183)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 55444
No 56
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.69 E-value=2.7e-16 Score=137.52 Aligned_cols=83 Identities=22% Similarity=0.186 Sum_probs=58.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++........|....+.....+.+.+.. ..+.+|||||......
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 89 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAA---------------VKAQIWDTAGLERYRA- 89 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEE---------------EEEEEEEESCCCTTCT-
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEeCCCchhhhh-
Confidence 689999999999999999999875443333322223333344444432 6799999999865432
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 90 ------~~~~~~~~~d~vi~v~D~~ 108 (193)
T 2oil_A 90 ------ITSAYYRGAVGALLVFDLT 108 (193)
T ss_dssp ------THHHHHTTCCEEEEEEETT
T ss_pred ------hhHHHhccCCEEEEEEECC
Confidence 2334568899999999985
No 57
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.69 E-value=3e-16 Score=133.49 Aligned_cols=83 Identities=19% Similarity=0.125 Sum_probs=56.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++........|..........+.+.+.. ..+.+|||||......
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~Dt~G~~~~~~- 70 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNEL---------------HKFLIWDTAGLERFRA- 70 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCSGGGGG-
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeE---------------EEEEEEcCCCchhhhc-
Confidence 689999999999999999999875433222222222223344554432 6789999999743222
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 71 ------~~~~~~~~~~~~i~v~d~~ 89 (170)
T 1z0j_A 71 ------LAPMYYRGSAAAIIVYDIT 89 (170)
T ss_dssp ------GTHHHHTTCSEEEEEEETT
T ss_pred ------ccHhhCcCCCEEEEEEECc
Confidence 2334568899999999985
No 58
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=141.32 Aligned_cols=84 Identities=20% Similarity=0.181 Sum_probs=63.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|.+|||||||+++|++........|+++.+.....+.+++.. ..+.+|||||......
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~i~Dt~g~~~~~~- 87 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEE---------------VTLVVYDIWEQGDAGG- 87 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEE---------------EEEEEECCCCCSGGGH-
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEE---------------EEEEEEecCCCccchh-
Confidence 689999999999999999998765445566777777777777777743 6789999999743210
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.+.. ..++.+|++++|+|+.
T Consensus 88 --~~~~---~~~~~~d~~ilv~d~~ 107 (195)
T 3cbq_A 88 --WLRD---HCLQTGDAFLIVFSVT 107 (195)
T ss_dssp --HHHH---HHHHHCSEEEEEEETT
T ss_pred --hhHH---HhhccCCEEEEEEECC
Confidence 1212 3357899999999985
No 59
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.69 E-value=4.8e-17 Score=151.21 Aligned_cols=87 Identities=31% Similarity=0.533 Sum_probs=70.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|+||||||||+|+|++....++++|++|.+...+.+.+.+ ..+.+|||||+.+....
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~~~ 66 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE-----------------KEFLVVDLPGIYSLTAH 66 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT-----------------EEEEEEECCCCSCCCSS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC-----------------ceEEEEeCCCccccccC
Confidence 6899999999999999999999988899999999999999999888 67999999998865432
Q ss_pred c--cchhhHHHhhccccCEEEEEEecc
Q psy2401 83 G--EGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~--~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. +.+.+.++ ..+.+|++++|+|++
T Consensus 67 ~~~~~~~~~~~-~~~~~d~vi~v~D~~ 92 (271)
T 3k53_A 67 SIDELIARNFI-LDGNADVIVDIVDST 92 (271)
T ss_dssp CHHHHHHHHHH-HTTCCSEEEEEEEGG
T ss_pred CHHHHHHHHhh-hccCCcEEEEEecCC
Confidence 1 11222222 236799999999985
No 60
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.69 E-value=4.5e-16 Score=142.86 Aligned_cols=88 Identities=14% Similarity=0.028 Sum_probs=64.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCC--ceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYP--FCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p--~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
++|+|+|++|||||||+|+|++.....+.++ ++|..+..+.+.+.+ ..+.+|||||+.+..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~-----------------~~i~liDTPG~~~~~ 84 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK-----------------CHVEVVDTPDIFSSQ 84 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT-----------------EEEEEEECCSCSSTT
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC-----------------cEEEEEECCCCCCCC
Confidence 7899999999999999999999876655444 378888888888887 679999999997544
Q ss_pred Ccc-cchhhHHHh----hccccCEEEEEEecc
Q psy2401 81 SKG-EGLGNKFLA----HIRETNIVIHVIRCF 107 (363)
Q Consensus 81 ~~~-~~l~~~~l~----~~~~aD~il~Vvda~ 107 (363)
... +.+...+.. ..+.+|++|+|+|+.
T Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~ 116 (247)
T 3lxw_A 85 VSKTDPGCEERGHCYLLSAPGPHALLLVTQLG 116 (247)
T ss_dssp HHHHSTTSHHHHHHHHHHTTCCSEEEEEEETT
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCC
Confidence 332 333333333 348999999999984
No 61
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.69 E-value=1.8e-16 Score=139.97 Aligned_cols=154 Identities=16% Similarity=0.085 Sum_probs=92.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.+|||||||+|+|++.... ..++.++.......+.+++.. ..+.+|||||.......
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~~ 88 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLGKDE---------------FHLHLVDTAGQDEYSIL 88 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC----C---------------EEEEEEEECCCCTTCCC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEECCEE---------------EEEEEEECCCccchHHH
Confidence 68999999999999999999986544 233333322223344444322 67899999997654432
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
....++.+|++++|+|+.+..
T Consensus 89 -------~~~~~~~~d~~i~v~d~~~~~---------------------------------------------------- 109 (201)
T 3oes_A 89 -------PYSFIIGVHGYVLVYSVTSLH---------------------------------------------------- 109 (201)
T ss_dssp -------CGGGTTTCCEEEEEEETTCHH----------------------------------------------------
T ss_pred -------HHHHHhcCCEEEEEEeCCCHH----------------------------------------------------
Confidence 234568899999999985310
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
.++.+..|+. .+........+|+++|+||.|.........+..+++....+.+++++||+...
T Consensus 110 -s~~~~~~~~~----------------~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (201)
T 3oes_A 110 -SFQVIESLYQ----------------KLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQ 172 (201)
T ss_dssp -HHHHHHHHHH----------------HHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHH
T ss_pred -HHHHHHHHHH----------------HHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCC
Confidence 0111111111 01111112467999999999964211122344556666667899999999776
Q ss_pred HHhcCC
Q psy2401 243 EISDLN 248 (363)
Q Consensus 243 ~i~el~ 248 (363)
++.++.
T Consensus 173 ~v~~l~ 178 (201)
T 3oes_A 173 LTQGIF 178 (201)
T ss_dssp HHHHHH
T ss_pred CHHHHH
Confidence 665553
No 62
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.69 E-value=3.4e-16 Score=136.86 Aligned_cols=162 Identities=24% Similarity=0.231 Sum_probs=96.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccc---------cccc-------------ccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKH---------LNNI-------------VKT 60 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~---------l~~~-------------~~~ 60 (363)
++|+++|++|||||||+|+|++........|.+..+.....+.+++..... .... ..+
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYN 87 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccccc
Confidence 689999999999999999999875543333433333444445554422000 0000 000
Q ss_pred ccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHH
Q psy2401 61 KKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAIL 140 (363)
Q Consensus 61 ~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~ 140 (363)
.......+.+|||||...... .....++.+|++++|+|+++..
T Consensus 88 ~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d~~i~v~D~~~~~------------------------------ 130 (208)
T 3clv_A 88 ENLCNIKFDIWDTAGQERYAS-------IVPLYYRGATCAIVVFDISNSN------------------------------ 130 (208)
T ss_dssp TTTCEEEEEEEECTTGGGCTT-------THHHHHTTCSEEEEEEETTCHH------------------------------
T ss_pred CccceeEEEEEECCCcHHHHH-------HHHHHhcCCCEEEEEEECCCHH------------------------------
Confidence 011126799999999755433 3345568999999999985310
Q ss_pred HhhhhhhhcccccCCchhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHH
Q psy2401 141 EKYIDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLD 220 (363)
Q Consensus 141 ~~~~~~i~k~~~~g~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~ 220 (363)
.++.+..|+. .+... ..+|+++|+||.|.. ......+
T Consensus 131 -----------------------s~~~~~~~~~----------------~i~~~---~~~piilv~NK~D~~-~~~~~~~ 167 (208)
T 3clv_A 131 -----------------------TLDRAKTWVN----------------QLKIS---SNYIIILVANKIDKN-KFQVDIL 167 (208)
T ss_dssp -----------------------HHHHHHHHHH----------------HHHHH---SCCEEEEEEECTTCC--CCSCHH
T ss_pred -----------------------HHHHHHHHHH----------------HHHhh---CCCcEEEEEECCCcc-cccCCHH
Confidence 0111111111 11111 238999999999932 2233456
Q ss_pred HHHHHHhcCCCcEEEeeHHHHHHH
Q psy2401 221 QLKIYAHNQNIPIIIICAKLEEEI 244 (363)
Q Consensus 221 ~i~~~~~~~~~~~i~~sa~~e~~i 244 (363)
++++++.+.+.+++++||+...++
T Consensus 168 ~~~~~~~~~~~~~~~~Sa~~~~~i 191 (208)
T 3clv_A 168 EVQKYAQDNNLLFIQTSAKTGTNI 191 (208)
T ss_dssp HHHHHHHHTTCEEEEECTTTCTTH
T ss_pred HHHHHHHHcCCcEEEEecCCCCCH
Confidence 777778878899999999954333
No 63
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.69 E-value=4.6e-16 Score=137.28 Aligned_cols=158 Identities=17% Similarity=0.153 Sum_probs=100.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++........|+.+.+.....+.+++.. ..+.+|||||.......
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~~ 73 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRL---------------VTMQIWDTAGQERFQSL 73 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCE---------------EEEEEEEECSSGGGSCS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEE---------------EEEEEEeCCCcHHHHHh
Confidence 689999999999999999999876555555555555666666666533 67999999997544332
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
....++.+|++++|+|+++... + .. ..
T Consensus 74 -------~~~~~~~~d~~i~v~d~~~~~s-------------~---------~~------------------------~~ 100 (207)
T 1vg8_A 74 -------GVAFYRGADCCVLVFDVTAPNT-------------F---------KT------------------------LD 100 (207)
T ss_dssp -------CCGGGTTCSEEEEEEETTCHHH-------------H---------HT------------------------HH
T ss_pred -------HHHHHhCCcEEEEEEECCCHHH-------------H---------HH------------------------HH
Confidence 2245588999999999853110 0 00 00
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHh-cCCCcEEEeeHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAH-NQNIPIIIICAKLE 241 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~-~~~~~~i~~sa~~e 241 (363)
..+..+..... ......+|+++++||.|.. ......+.++++.. ..+.+++++||+..
T Consensus 101 ~~~~~~~~~~~--------------------~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 159 (207)
T 1vg8_A 101 SWRDEFLIQAS--------------------PRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEA 159 (207)
T ss_dssp HHHHHHHHHHC--------------------CSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTT
T ss_pred HHHHHHHHhcc--------------------cccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCC
Confidence 00111100000 0011467999999999974 22333455666665 56788999999976
Q ss_pred HHHhcCCH
Q psy2401 242 EEISDLNN 249 (363)
Q Consensus 242 ~~i~el~~ 249 (363)
.++.++.+
T Consensus 160 ~gi~~l~~ 167 (207)
T 1vg8_A 160 INVEQAFQ 167 (207)
T ss_dssp BSHHHHHH
T ss_pred CCHHHHHH
Confidence 66655533
No 64
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.69 E-value=9.2e-17 Score=160.75 Aligned_cols=90 Identities=22% Similarity=0.274 Sum_probs=49.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcC-CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKL-KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~-~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
+++|+++|+||||||||+|+|++. .+.++++|++|.++....+.+++ .++.+|||||+.++.
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g-----------------~~l~liDT~G~~~~~ 295 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK-----------------TMFRLTDTAGLREAG 295 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT-----------------EEEEEEC--------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC-----------------eEEEEEECCCCCcch
Confidence 468999999999999999999998 46689999999999999999988 679999999997654
Q ss_pred Ccccchh-hHHHhhccccCEEEEEEeccc
Q psy2401 81 SKGEGLG-NKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 81 ~~~~~l~-~~~l~~~~~aD~il~Vvda~~ 108 (363)
...+.++ ...+..++.+|++++|+|+++
T Consensus 296 ~~ve~~gi~~~~~~~~~aD~vl~VvD~s~ 324 (476)
T 3gee_A 296 EEIEHEGIRRSRMKMAEADLILYLLDLGT 324 (476)
T ss_dssp ------------CCCSSCSEEEEEEETTT
T ss_pred hHHHHHHHHHHHhhcccCCEEEEEEECCC
Confidence 4333221 345667899999999999954
No 65
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.68 E-value=1.4e-16 Score=141.34 Aligned_cols=83 Identities=25% Similarity=0.213 Sum_probs=65.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++........|+.+.+.....+.+++.. ..+.+|||||......
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~- 84 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK---------------VKLQLWDTAGQERFRT- 84 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEE---------------EEEEEECCTTGGGGTC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEE---------------EEEEEEeCCCcHHHHH-
Confidence 689999999999999999999876666666766666666777777643 5799999999754433
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 85 ------~~~~~~~~~d~ii~v~d~~ 103 (213)
T 3cph_A 85 ------ITTAYYRGAMGIILVYDVT 103 (213)
T ss_dssp ------CCHHHHTTCSEEEEEEETT
T ss_pred ------HHHHHhccCCEEEEEEECC
Confidence 2234558899999999985
No 66
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.68 E-value=7.3e-17 Score=143.94 Aligned_cols=164 Identities=15% Similarity=0.103 Sum_probs=98.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++........|..+.+.....+.+++.... ....+.....+.+|||||...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~l~Dt~G~~~---- 96 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPN-----GSSGKAFKVHLQLWDTAGQER---- 96 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC------------CCEEEEEEEEEEEESHHH----
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCcccc-----ccccCceeEEEEEEECCCcHh----
Confidence 68999999999999999999986554333343333344444555442000 000011126799999999643
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
+.......++.+|++++|+|++..
T Consensus 97 ---~~~~~~~~~~~~d~iilV~D~~~~----------------------------------------------------- 120 (217)
T 2f7s_A 97 ---FRSLTTAFFRDAMGFLLMFDLTSQ----------------------------------------------------- 120 (217)
T ss_dssp ---HHHHHHHHHTTCCEEEEEEETTCH-----------------------------------------------------
T ss_pred ---HHhHHHHHhcCCCEEEEEEECcCH-----------------------------------------------------
Confidence 222344667899999999998531
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
..++.+..|+..-.. ......+|+++|+||.|.........+.+++++...+.+++++||+...
T Consensus 121 ~s~~~~~~~l~~i~~----------------~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~ 184 (217)
T 2f7s_A 121 QSFLNVRNWMSQLQA----------------NAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQ 184 (217)
T ss_dssp HHHHHHHHHHHTCCC----------------CCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTB
T ss_pred HHHHHHHHHHHHHHH----------------hcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCC
Confidence 111122222221100 0111568999999999964211222456667777778899999999665
Q ss_pred HHhcC
Q psy2401 243 EISDL 247 (363)
Q Consensus 243 ~i~el 247 (363)
++.++
T Consensus 185 gi~~l 189 (217)
T 2f7s_A 185 NVEKA 189 (217)
T ss_dssp THHHH
T ss_pred CHHHH
Confidence 55444
No 67
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.68 E-value=2.7e-16 Score=134.63 Aligned_cols=83 Identities=13% Similarity=0.052 Sum_probs=53.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc-ccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS-AENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~-~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
++|+++|++|||||||+|+|++.... ..+.+++ +.....+.+++.. ..+.+|||||......
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~~~ 67 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGE--DVYERTLTVDGED---------------TTLVVVDTWEAEKLDK 67 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-----CCCSSS--SEEEEEEEETTEE---------------EEEEEECCC-------
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccccCcccc--ceeEEEEEECCEE---------------EEEEEEecCCCCccch
Confidence 68999999999999999999987432 3333333 2334556666643 5789999999754211
Q ss_pred cccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.. .....++.+|++++|+|+.
T Consensus 68 --~~---~~~~~~~~~~~~i~v~d~~ 88 (175)
T 2nzj_A 68 --SW---SQESCLQGGSAYVIVYSIA 88 (175)
T ss_dssp --CH---HHHHTTTSCSEEEEEEETT
T ss_pred --hh---hHHhhcccCCEEEEEEECC
Confidence 11 2234557899999999985
No 68
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.68 E-value=9.2e-17 Score=151.79 Aligned_cols=88 Identities=27% Similarity=0.268 Sum_probs=67.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCc-cccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeeccc-CCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKI-SAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLV-SGA 80 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~-~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~-~~~ 80 (363)
.+|+|+|+||||||||+|+|++... .+++.|++|.+...|.+..++ .++.++||||+. ...
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~-----------------~~i~~iDTpG~~~~~~ 71 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA-----------------YQAIYVDTPGLHMEEK 71 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT-----------------EEEEEESSSSCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC-----------------eeEEEEECcCCCccch
Confidence 4799999999999999999999864 467889999888888887766 789999999985 211
Q ss_pred Cc-ccchhhHHHhhccccCEEEEEEecc
Q psy2401 81 SK-GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 81 ~~-~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.. .+.+.......++.+|++++|+|+.
T Consensus 72 ~~l~~~~~~~~~~~l~~~D~vl~Vvd~~ 99 (301)
T 1ega_A 72 RAINRLMNKAASSSIGDVELVIFVVEGT 99 (301)
T ss_dssp HHHHHHHTCCTTSCCCCEEEEEEEEETT
T ss_pred hhHHHHHHHHHHHHHhcCCEEEEEEeCC
Confidence 10 1111223346678999999999984
No 69
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.68 E-value=6.7e-16 Score=139.28 Aligned_cols=89 Identities=21% Similarity=0.366 Sum_probs=63.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|.+|||||||+|+|++....+++++++|.....+...+.+ ..+.+|||||+......
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~~~ 92 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL-----------------NKYQIIDTPGLLDRAFE 92 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT-----------------EEEEEEECTTTTTSCGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC-----------------CeEEEEECCCCcCcccc
Confidence 6899999999999999999999877678889999888888777766 67999999998653321
Q ss_pred ccc-h-hhHHHhhccccCEEEEEEeccc
Q psy2401 83 GEG-L-GNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~~-l-~~~~l~~~~~aD~il~Vvda~~ 108 (363)
... + ........+.+|++++|+|+++
T Consensus 93 ~~~~~~~~~~~~~~~~~d~~i~v~d~~~ 120 (228)
T 2qu8_A 93 NRNTIEMTTITALAHINGVILFIIDISE 120 (228)
T ss_dssp GCCHHHHHHHHHHHTSSEEEEEEEETTC
T ss_pred hhhhHHHHHHHHhhccccEEEEEEeccc
Confidence 111 0 1112233577899999999853
No 70
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=141.24 Aligned_cols=153 Identities=16% Similarity=0.152 Sum_probs=93.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|.+|||||||+|+|++........|+.+.+.....+.+++.. ..+.+|||||......
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~~~~~- 89 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKT---------------VKLQIWDTAGQERFRS- 89 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEE---------------EEEEEECCTTHHHHSC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCee---------------eEEEEEcCCCcHhHHH-
Confidence 689999999999999999999876655555666666666667776643 6799999999754322
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
.....++.+|++++|+|+.+..
T Consensus 90 ------~~~~~~~~~d~~i~v~d~~~~~---------------------------------------------------- 111 (200)
T 2o52_A 90 ------VTRSYYRGAAGALLVYDITSRE---------------------------------------------------- 111 (200)
T ss_dssp ------CCHHHHTTCSEEEEEEETTCHH----------------------------------------------------
T ss_pred ------HHHHHhccCCEEEEEEECcCHH----------------------------------------------------
Confidence 1234558899999999985310
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
.++.+..|+. .+... .....|+++++||.|.........++..+++...+.+++++||+...
T Consensus 112 -s~~~~~~~~~----------------~~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~ 173 (200)
T 2o52_A 112 -TYNSLAAWLT----------------DARTL-ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGE 173 (200)
T ss_dssp -HHHTHHHHHH----------------HHHHH-TCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred -HHHHHHHHHH----------------HHHHh-cCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 0111111111 01111 11467999999999974211122345666677778899999999655
Q ss_pred HHhcC
Q psy2401 243 EISDL 247 (363)
Q Consensus 243 ~i~el 247 (363)
++.++
T Consensus 174 gi~~l 178 (200)
T 2o52_A 174 NVEEA 178 (200)
T ss_dssp THHHH
T ss_pred CHHHH
Confidence 55444
No 71
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.68 E-value=1.7e-16 Score=138.86 Aligned_cols=83 Identities=22% Similarity=0.167 Sum_probs=60.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|++|||||||+|+|++........|..+.+.....+.+++.. ..+.+|||||.......
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~~ 86 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQ---------------IKLQIWDTAGQESFRSI 86 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEE---------------EEEEEECCTTGGGTSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEE---------------EEEEEEECCCchhhhhh
Confidence 689999999999999999999876554455555555556667776643 67999999997654332
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
....++.+|++++|+|++
T Consensus 87 -------~~~~~~~~d~ii~v~d~~ 104 (191)
T 2a5j_A 87 -------TRSYYRGAAGALLVYDIT 104 (191)
T ss_dssp -------CHHHHTTCSEEEEEEETT
T ss_pred -------HHHHhccCCEEEEEEECC
Confidence 234558899999999985
No 72
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.68 E-value=4e-16 Score=134.09 Aligned_cols=82 Identities=22% Similarity=0.207 Sum_probs=67.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
..+|+++|.+|||||||+|+|++........|++|.+.....+.+++ ..+.+|||||......
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~~~ 70 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND-----------------KKITFLDTPGHEAFTT 70 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT-----------------EEEEESCCCSSSSSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC-----------------ceEEEEECCCCHHHHH
Confidence 36899999999999999999999877777788888888777888877 6788999999865544
Q ss_pred cccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.. ...++.+|++++|+|+.
T Consensus 71 ~~-------~~~~~~~d~~i~v~d~~ 89 (178)
T 2lkc_A 71 MR-------ARGAQVTDIVILVVAAD 89 (178)
T ss_dssp SC-------CSSCCCCCEEEEEEETT
T ss_pred HH-------HHHHhhCCEEEEEEECC
Confidence 22 24568899999999984
No 73
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.68 E-value=2.8e-17 Score=142.94 Aligned_cols=87 Identities=32% Similarity=0.527 Sum_probs=68.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++....++.+|++|.++..+.+.+++ ..+.+|||||.......
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~~~~ 70 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-----------------EKFKVVDLPGVYSLTAN 70 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT-----------------EEEEEEECCCCSCCSSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC-----------------cEEEEEECCCcCccccc
Confidence 5899999999999999999999877788899999999889988877 67999999998765321
Q ss_pred c--cchhhHHHhhccccCEEEEEEecc
Q psy2401 83 G--EGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~--~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. +.+...++.. ..+|++++|+|++
T Consensus 71 ~~~~~~~~~~~~~-~~~~~~i~v~d~~ 96 (188)
T 2wjg_A 71 SIDEIIARDYIIN-EKPDLVVNIVDAT 96 (188)
T ss_dssp SHHHHHHHHHHHH-HCCSEEEEEEEGG
T ss_pred cHHHHHHHHHHhc-cCCCEEEEEecch
Confidence 1 1222223221 3589999999984
No 74
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=140.41 Aligned_cols=153 Identities=16% Similarity=0.127 Sum_probs=93.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|.+|||||||+|+|++........|..+.+.....+.+++.. ..+.+|||||..+.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~--- 91 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKR---------------VKLQIWDTAGQERF--- 91 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEE---------------EEEEEECCTTCGGG---
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEE---------------EEEEEEECCCcHhH---
Confidence 689999999999999999999865443333433344545566666533 67999999996432
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
.......++.+|++++|+|+.+..
T Consensus 92 ----~~~~~~~~~~~d~iilv~D~~~~~---------------------------------------------------- 115 (201)
T 2hup_A 92 ----RTITQSYYRSANGAILAYDITKRS---------------------------------------------------- 115 (201)
T ss_dssp ----HHHHHHHHTTCSEEEEEEETTBHH----------------------------------------------------
T ss_pred ----HHHHHHHHhhCCEEEEEEECCCHH----------------------------------------------------
Confidence 123345668999999999985310
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCC-cEEEeeHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNI-PIIIICAKLE 241 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~-~~i~~sa~~e 241 (363)
.++.+..|+. .+... .....|+++++||.|.........+++++++...+. +++.+||+..
T Consensus 116 -s~~~~~~~~~----------------~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g 177 (201)
T 2hup_A 116 -SFLSVPHWIE----------------DVRKY-AGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDS 177 (201)
T ss_dssp -HHHTHHHHHH----------------HHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTT
T ss_pred -HHHHHHHHHH----------------HHHHh-cCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 0111111111 01111 114679999999999742112234566777777788 8999999955
Q ss_pred HHHhcC
Q psy2401 242 EEISDL 247 (363)
Q Consensus 242 ~~i~el 247 (363)
.++.++
T Consensus 178 ~gi~~l 183 (201)
T 2hup_A 178 SNVEEA 183 (201)
T ss_dssp BSHHHH
T ss_pred CCHHHH
Confidence 444433
No 75
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.68 E-value=2.2e-16 Score=152.95 Aligned_cols=88 Identities=28% Similarity=0.387 Sum_probs=61.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKG 83 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 83 (363)
.|+|+|+||||||||+|+|++....++++||+|.++..+.+.+++ ..+.++||||+.......
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g-----------------~~v~l~DT~G~i~~lp~~ 243 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN-----------------RKIMLVDTVGFIRGIPPQ 243 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT-----------------EEEEEEECCCBCSSCCGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC-----------------EEEEEEeCCCchhcCCHH
Confidence 399999999999999999999887888999999999999999988 568999999986542211
Q ss_pred c-chhhHHHhhccccCEEEEEEeccc
Q psy2401 84 E-GLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 84 ~-~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
. ......+..++.+|++++|+|+++
T Consensus 244 lve~f~~tl~~~~~aD~il~VvD~s~ 269 (364)
T 2qtf_A 244 IVDAFFVTLSEAKYSDALILVIDSTF 269 (364)
T ss_dssp GHHHHHHHHHGGGGSSEEEEEEETTS
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 0 001344567889999999999853
No 76
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=138.78 Aligned_cols=83 Identities=22% Similarity=0.219 Sum_probs=57.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|.+|||||||+|+|++........|..+.+.....+.+++.. ..+.+|||||....
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~~~--- 88 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKK---------------IRLQIWDTAGQERF--- 88 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEE---------------EEEEEEEECCSGGG---
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeE---------------EEEEEEeCCCcHHH---
Confidence 689999999999999999999875544445555555555666666643 57999999995432
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.......++.+|++++|+|+.
T Consensus 89 ----~~~~~~~~~~~d~iilV~D~~ 109 (192)
T 2il1_A 89 ----NSITSAYYRSAKGIILVYDIT 109 (192)
T ss_dssp ----HHHHHHHHHHCSEEEEEEETT
T ss_pred ----HHHHHHHhcCCCEEEEEEECc
Confidence 223445668899999999985
No 77
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=8.6e-17 Score=140.76 Aligned_cols=83 Identities=18% Similarity=0.132 Sum_probs=59.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.+|||||||+|+|++........|..+.+.....+.+++.. ..+.+|||||.....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~-- 86 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKR---------------VKLQIWDTAGQERYR-- 86 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTT---------------EEEEEECHHHHHHCH--
T ss_pred eEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEE---------------EEEEEEeCCChHHHH--
Confidence 799999999999999999999865433333333334444455555533 679999999954322
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
......++.+|++++|+|+.
T Consensus 87 -----~~~~~~~~~~d~~i~v~d~~ 106 (191)
T 3dz8_A 87 -----TITTAYYRGAMGFILMYDIT 106 (191)
T ss_dssp -----HHHHHHHTTCCEEEEEEETT
T ss_pred -----HHHHHHHccCCEEEEEEECc
Confidence 23445678999999999985
No 78
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.67 E-value=6.6e-16 Score=136.41 Aligned_cols=78 Identities=19% Similarity=0.342 Sum_probs=55.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.+|+++|++|||||||++++++.... .+. .|..++.+.+.+++ ..+.+|||||......
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~~~--~~~-~t~~~~~~~~~~~~-----------------~~l~i~Dt~G~~~~~~- 84 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDRLG--QHV-PTLHPTSEELTIAG-----------------MTFTTFDLGGHIQARR- 84 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETT-----------------EEEEEEEECC----CC-
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--ccC-CCCCceeEEEEECC-----------------EEEEEEECCCcHhhHH-
Confidence 58999999999999999999986432 121 25566677888877 6899999999765443
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 85 ------~~~~~~~~~d~~i~v~D~~ 103 (198)
T 1f6b_A 85 ------VWKNYLPAINGIVFLVDCA 103 (198)
T ss_dssp ------GGGGGGGGCSEEEEEEETT
T ss_pred ------HHHHHHhcCCEEEEEEECC
Confidence 2234568899999999985
No 79
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.67 E-value=4.6e-16 Score=133.84 Aligned_cols=84 Identities=21% Similarity=0.167 Sum_probs=56.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.+|+++|++|||||||+|+|++........|..+.+.....+.+++.. ...+.+|||||......
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~Dt~G~~~~~~- 73 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDK--------------VATMQVWDTAGQERFQS- 73 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSC--------------CEEEEEECCC--------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCc--------------EEEEEEEECCCChHhhh-
Confidence 689999999999999999999876554445555566666667666321 16789999999654332
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 74 ------~~~~~~~~~d~~i~v~d~~ 92 (182)
T 1ky3_A 74 ------LGVAFYRGADCCVLVYDVT 92 (182)
T ss_dssp ---------CCSTTCCEEEEEEETT
T ss_pred ------hhHHHhhcCCEEEEEEECC
Confidence 2335568899999999985
No 80
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.67 E-value=5.2e-16 Score=135.21 Aligned_cols=151 Identities=19% Similarity=0.175 Sum_probs=90.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|.+|||||||+|+|++.... ..++.++.......+.+++.. ..+.+|||||......
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~- 84 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGET---------------CLLDILDTAGQEEYSA- 84 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCC-------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCc-cccCCccceEEEEEEEECCEE---------------EEEEEEECCChHHHHH-
Confidence 68999999999999999999986432 334444444444455555532 5689999999754332
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
.....++.+|++++|+|+.+..
T Consensus 85 ------~~~~~~~~~d~~i~v~d~~~~~---------------------------------------------------- 106 (190)
T 3con_A 85 ------MRDQYMRTGEGFLCVFAINNSK---------------------------------------------------- 106 (190)
T ss_dssp -----------CTTCSEEEEEEETTCHH----------------------------------------------------
T ss_pred ------HHHHhhCcCCEEEEEEECcCHH----------------------------------------------------
Confidence 2234568899999999984310
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
.++.+..|+. .+..+.....+|+++++||.|... .....+.+++++...+.+++++||+...
T Consensus 107 -s~~~~~~~~~----------------~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 168 (190)
T 3con_A 107 -SFADINLYRE----------------QIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQ 168 (190)
T ss_dssp -HHHHHHHHHH----------------HHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCT
T ss_pred -HHHHHHHHHH----------------HHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 0111111111 111111124689999999999642 2223455666666677899999999544
Q ss_pred HHhc
Q psy2401 243 EISD 246 (363)
Q Consensus 243 ~i~e 246 (363)
++.+
T Consensus 169 gi~~ 172 (190)
T 3con_A 169 GVED 172 (190)
T ss_dssp THHH
T ss_pred CHHH
Confidence 4433
No 81
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.6e-16 Score=141.41 Aligned_cols=83 Identities=25% Similarity=0.204 Sum_probs=59.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+++|++........|+.+.+.....+.+++.. ..+.+|||||.......
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~~ 78 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKR---------------IKAQIWDTAGQERYRAI 78 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEE---------------EEEEEECCTTTTTTTCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEE---------------EEEEEEECCCccchhhh
Confidence 689999999999999999999876655555655666666667776643 57899999997654332
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
....++.+|++++|+|+.
T Consensus 79 -------~~~~~~~~d~vilV~D~~ 96 (223)
T 3cpj_B 79 -------TSAYYRGAVGALIVYDIS 96 (223)
T ss_dssp -------CGGGTTTCCEEEEEEC-C
T ss_pred -------HHHHhccCCEEEEEEeCC
Confidence 234568899999999985
No 82
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.67 E-value=1.6e-16 Score=137.42 Aligned_cols=82 Identities=20% Similarity=0.171 Sum_probs=57.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.+|||||||+|+|++..... .++.++.......+.+++.. ..+.+|||||......
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~- 81 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKIFVD-DYDPTIEDSYLKHTEIDNQW---------------AILDVLDTAGQEEFSA- 81 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETTEE---------------EEEEEEECCSCGGGCS-
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCccceeEEEEEeCCcE---------------EEEEEEECCCchhhHH-
Confidence 689999999999999999999764332 33333333334555665533 5678899999654332
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 82 ------~~~~~~~~~d~~i~v~d~~ 100 (183)
T 3kkq_A 82 ------MREQYMRTGDGFLIVYSVT 100 (183)
T ss_dssp ------SHHHHHHHCSEEEEEEETT
T ss_pred ------HHHHHHhcCCEEEEEEECC
Confidence 2234457899999999985
No 83
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.67 E-value=3.7e-16 Score=155.02 Aligned_cols=184 Identities=21% Similarity=0.186 Sum_probs=115.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.+|+++|+||||||||+|+|++.. ..++++|++|.+.....+.+++ ..+.+|||||+.+...
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~-----------------~~~~l~DT~G~~~~~~ 238 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ-----------------QEFVIVDTAGMRKKGK 238 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT-----------------EEEEETTHHHHTCBTT
T ss_pred cEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC-----------------eEEEEEECCCcCcCcc
Confidence 689999999999999999999985 4588999999999988898888 6789999999865443
Q ss_pred cccchh----hHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCch
Q psy2401 82 KGEGLG----NKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEH 157 (363)
Q Consensus 82 ~~~~l~----~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~ 157 (363)
..+.+. ...+..++.+|++++|+|++++..
T Consensus 239 ~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s---------------------------------------------- 272 (436)
T 2hjg_A 239 VYETTEKYSVLRALKAIDRSEVVAVVLDGEEGII---------------------------------------------- 272 (436)
T ss_dssp BCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCC----------------------------------------------
T ss_pred ccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCc----------------------------------------------
Confidence 222111 123457789999999999954210
Q ss_pred hHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCch----HHHHHHHHHHh-cCCCc
Q psy2401 158 SIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNN----LLLDQLKIYAH-NQNIP 232 (363)
Q Consensus 158 ~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~----~~~~~i~~~~~-~~~~~ 232 (363)
..+...+... ....+|+++|+||.|...... +..+.+.+.+. ..+.+
T Consensus 273 ---------------------------~~~~~~~~~~-~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~ 324 (436)
T 2hjg_A 273 ---------------------------EQDKRIAGYA-HEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP 324 (436)
T ss_dssp ---------------------------HHHHHHHHHH-HHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSC
T ss_pred ---------------------------HHHHHHHHHH-HHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCC
Confidence 0000000000 114689999999999742112 12233333322 23578
Q ss_pred EEEeeHHHHHHHhcCCHHHHHHHHhh-cCCCchhHHHHHHHHHHhC
Q psy2401 233 IIIICAKLEEEISDLNNIDKKFFLDN-LGLKETKLNDLIRASFSLL 277 (363)
Q Consensus 233 ~i~~sa~~e~~i~el~~~~~~~~l~~-~~l~~~~l~~l~~~~~~~l 277 (363)
++++||+...++.++.+...+.+.+. ..+....+.+++..+....
T Consensus 325 ~~~~SA~tg~~v~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~~~~~ 370 (436)
T 2hjg_A 325 ILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMN 370 (436)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHS
T ss_pred EEEEecccCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC
Confidence 99999999999988866555544432 2344566788888776553
No 84
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.66 E-value=9.5e-16 Score=133.82 Aligned_cols=80 Identities=23% Similarity=0.264 Sum_probs=59.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|.+|||||||+|+|++.......+ ..|.......+.+++ ..+.+|||||......
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~~~- 82 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSNAQSQNI-LPTIGFSIEKFKSSS-----------------LSFTVFDMSGQGRYRN- 82 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGGGCCSSC-CCCSSEEEEEEECSS-----------------CEEEEEEECCSTTTGG-
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCc-CCccceeEEEEEECC-----------------EEEEEEECCCCHHHHH-
Confidence 689999999999999999999865222222 235556666677766 6799999999654332
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 83 ------~~~~~~~~~d~ii~v~d~~ 101 (190)
T 2h57_A 83 ------LWEHYYKEGQAIIFVIDSS 101 (190)
T ss_dssp ------GGGGGGGGCSEEEEEEETT
T ss_pred ------HHHHHHhcCCEEEEEEECC
Confidence 2335668999999999985
No 85
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.66 E-value=1.2e-15 Score=133.68 Aligned_cols=79 Identities=19% Similarity=0.282 Sum_probs=60.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.+|+++|++|||||||++++++.... .+ ..|..+..+.+.+++ ..+.+|||||......
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~~- 82 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRLA--TL-QPTWHPTSEELAIGN-----------------IKFTTFDLGGHIQARR- 82 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCC--CC-CCCCSCEEEEEEETT-----------------EEEEEEECCCSGGGTT-
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--cc-ccCCCCCeEEEEECC-----------------EEEEEEECCCCHHHHH-
Confidence 68999999999999999999986432 12 235666777888877 6799999999865433
Q ss_pred ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.....++.+|++++|+|+++
T Consensus 83 ------~~~~~~~~~d~~i~v~d~~~ 102 (190)
T 1m2o_B 83 ------LWKDYFPEVNGIVFLVDAAD 102 (190)
T ss_dssp ------SGGGGCTTCCEEEEEEETTC
T ss_pred ------HHHHHHhcCCEEEEEEECCC
Confidence 22345689999999999953
No 86
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.66 E-value=4.9e-16 Score=154.97 Aligned_cols=184 Identities=21% Similarity=0.214 Sum_probs=118.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC-CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL-KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~-~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.+|+++|.+|+|||||+|+|++. ...++++|++|.++....+.+++ ..+++|||||+.+...
T Consensus 196 ~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~-----------------~~~~l~DT~G~~~~~~ 258 (456)
T 4dcu_A 196 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ-----------------QEFVIVDTAGMRKKGK 258 (456)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT-----------------EEEEETTGGGTTTBTT
T ss_pred ceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC-----------------ceEEEEECCCCCcCcc
Confidence 68999999999999999999987 46789999999999999999888 6799999999865432
Q ss_pred cc---cch-hhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCch
Q psy2401 82 KG---EGL-GNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEH 157 (363)
Q Consensus 82 ~~---~~l-~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~ 157 (363)
.. +.+ ....+.+++.+|++++|+|++++ ..
T Consensus 259 ~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~------------~~---------------------------------- 292 (456)
T 4dcu_A 259 VYETTEKYSVLRALKAIDRSEVVAVVLDGEEG------------II---------------------------------- 292 (456)
T ss_dssp BCCCCSHHHHHHHHHHHHHCSEEEEEEETTTC------------CC----------------------------------
T ss_pred cchHHHHHHHHHHHHHHhhCCEEEEEEeCCCC------------cC----------------------------------
Confidence 21 111 12345677899999999998532 10
Q ss_pred hHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcC-----CCc
Q psy2401 158 SIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQ-----NIP 232 (363)
Q Consensus 158 ~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~-----~~~ 232 (363)
..+...+... ....+|+++|+||.|.........+++++.+.+. +.+
T Consensus 293 ---------------------------~~~~~~~~~~-~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (456)
T 4dcu_A 293 ---------------------------EQDKRIAGYA-HEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP 344 (456)
T ss_dssp ---------------------------HHHHHHHHHH-HHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSC
T ss_pred ---------------------------HHHHHHHHHH-HHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCC
Confidence 0000001101 1146899999999997421222233333333322 468
Q ss_pred EEEeeHHHHHHHhcCCHHHHHHHHhh-cCCCchhHHHHHHHHHHhC
Q psy2401 233 IIIICAKLEEEISDLNNIDKKFFLDN-LGLKETKLNDLIRASFSLL 277 (363)
Q Consensus 233 ~i~~sa~~e~~i~el~~~~~~~~l~~-~~l~~~~l~~l~~~~~~~l 277 (363)
++++||+...++.++.+...+.+.+. ..+....+.+.+..+....
T Consensus 345 ~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~~~~~ 390 (456)
T 4dcu_A 345 ILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMN 390 (456)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHS
T ss_pred EEEEcCCCCcCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhC
Confidence 99999999999888866554444332 2344566778877666543
No 87
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.66 E-value=6.7e-16 Score=134.04 Aligned_cols=79 Identities=24% Similarity=0.291 Sum_probs=58.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.+|+++|++|||||||+|++++.. .....| |.......+.+++ ..+.+|||||..+...
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~--t~~~~~~~~~~~~-----------------~~~~~~Dt~G~~~~~~- 77 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED-VDTISP--TLGFNIKTLEHRG-----------------FKLNIWDVGGQKSLRS- 77 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC-CSSCCC--CSSEEEEEEEETT-----------------EEEEEEEECCSHHHHT-
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CCcccc--cCccceEEEEECC-----------------EEEEEEECCCCHhHHH-
Confidence 689999999999999999999865 222222 4444555666655 7899999999754222
Q ss_pred ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.....++.+|++++|+|+++
T Consensus 78 ------~~~~~~~~~d~ii~v~d~~~ 97 (186)
T 1ksh_A 78 ------YWRNYFESTDGLIWVVDSAD 97 (186)
T ss_dssp ------TGGGGCTTCSEEEEEEETTC
T ss_pred ------HHHHHhcCCCEEEEEEECcC
Confidence 23355689999999999853
No 88
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.66 E-value=8.4e-16 Score=133.99 Aligned_cols=163 Identities=13% Similarity=0.072 Sum_probs=96.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCc----eeecceeEEEEeCCccccccccccccccccceeEEEEeeecccC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPF----CTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVS 78 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~----~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 78 (363)
+||+++|++|||||||++.+.+.......... +...|+.+.- +....+ .........+++|||||...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~~~-------~~~~~~~~~~~i~Dt~G~~~ 86 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFD-FLPLDI-------GEVKGFKTRFHLYTVPGQVF 86 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEE-ECCSSC-------CCSSSCEEEEEEEECCSCCS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeee-eccccc-------ccccCCceEEEEEeCCChHH
Confidence 68999999999999999999885322110000 0011222211 111000 00001126799999999754
Q ss_pred CCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchh
Q psy2401 79 GASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHS 158 (363)
Q Consensus 79 ~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~ 158 (363)
... .....++.+|++++|+|+++.. .
T Consensus 87 ~~~-------~~~~~~~~~d~~i~v~D~~~~~-----------------------------------------------~ 112 (198)
T 3t1o_A 87 YNA-------SRKLILRGVDGIVFVADSAPNR-----------------------------------------------L 112 (198)
T ss_dssp CSH-------HHHHHTTTCCEEEEEEECCGGG-----------------------------------------------H
T ss_pred HHH-------HHHHHHhcCCEEEEEEECCcch-----------------------------------------------h
Confidence 332 3345678999999999985210 0
Q ss_pred HHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCC-cEEEee
Q psy2401 159 IELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNI-PIIIIC 237 (363)
Q Consensus 159 ~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~-~~i~~s 237 (363)
......++.+..|+.+.. ......|+++|+||.|.. .....+++++++...+. +++++|
T Consensus 113 ~~~~~s~~~l~~~l~~~~------------------~~~~~~piilv~NK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~S 172 (198)
T 3t1o_A 113 RANAESMRNMRENLAEYG------------------LTLDDVPIVIQVNKRDLP--DALPVEMVRAVVDPEGKFPVLEAV 172 (198)
T ss_dssp HHHHHHHHHHHHHHHHTT------------------CCTTSSCEEEEEECTTST--TCCCHHHHHHHHCTTCCSCEEECB
T ss_pred hHhHHHHHHHHHHHHhhc------------------cccCCCCEEEEEEchhcc--cccCHHHHHHHHHhcCCceEEEEe
Confidence 001123333444443210 122578999999999964 23455677888888888 999999
Q ss_pred HHHHHHHhcC
Q psy2401 238 AKLEEEISDL 247 (363)
Q Consensus 238 a~~e~~i~el 247 (363)
|+..+++.++
T Consensus 173 a~~~~gv~~l 182 (198)
T 3t1o_A 173 ATEGKGVFET 182 (198)
T ss_dssp GGGTBTHHHH
T ss_pred cCCCcCHHHH
Confidence 9965554443
No 89
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.65 E-value=2.3e-15 Score=145.50 Aligned_cols=158 Identities=24% Similarity=0.290 Sum_probs=106.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.+++++|+||||||||+|+|++....++++|++|..+..+.+...+ ..+.+|||||+......
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~~~~ 230 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY-----------------FRYQIIDTPGLLDRPIS 230 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT-----------------EEEEEEECTTTSSSCST
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC-----------------ceEEEEeCCCccccchh
Confidence 5899999999999999999999887788899999998888877765 67999999998754322
Q ss_pred cc-chh-hHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHH
Q psy2401 83 GE-GLG-NKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIE 160 (363)
Q Consensus 83 ~~-~l~-~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~ 160 (363)
.. .+. ..+......+|++++|+|++..... +++ .
T Consensus 231 ~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~-----------~~~---------------------------------~ 266 (357)
T 2e87_A 231 ERNEIEKQAILALRYLGNLIIYIFDPSEHCGF-----------PLE---------------------------------E 266 (357)
T ss_dssp TSCHHHHHHHHGGGGTCSEEEEEECTTCTTSS-----------CHH---------------------------------H
T ss_pred hhhHHHHHHHHHHHhcCCEEEEEEeCCccccC-----------CHH---------------------------------H
Confidence 11 111 1222333569999999998532100 000 0
Q ss_pred HHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHH
Q psy2401 161 LLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKL 240 (363)
Q Consensus 161 ~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~ 240 (363)
....+. .+... ...+|+++|+||.|.. .....+.+.+++...+.+++++||+.
T Consensus 267 ~~~~~~-----------------------~i~~~--~~~~piilV~NK~Dl~--~~~~~~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 267 QIHLFE-----------------------EVHGE--FKDLPFLVVINKIDVA--DEENIKRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp HHHHHH-----------------------HHHHH--TTTSCEEEEECCTTTC--CHHHHHHHHHHHHHTTCCCEECBTTT
T ss_pred HHHHHH-----------------------HHHHh--cCCCCEEEEEECcccC--ChHHHHHHHHHHHhcCCCeEEEeCCC
Confidence 000111 01111 1278999999999964 23334556666666778899999997
Q ss_pred HHHHhcCC
Q psy2401 241 EEEISDLN 248 (363)
Q Consensus 241 e~~i~el~ 248 (363)
.+++.++.
T Consensus 320 g~gi~~l~ 327 (357)
T 2e87_A 320 GTGIDLVK 327 (357)
T ss_dssp TBTHHHHH
T ss_pred CcCHHHHH
Confidence 66665553
No 90
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.65 E-value=7.9e-16 Score=138.57 Aligned_cols=153 Identities=18% Similarity=0.157 Sum_probs=95.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.+|||||||++.++.........|....+.....+.+++.. ..+++|||+|..++..
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~---------------v~l~iwDtaGqe~~~~- 77 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT---------------IRLQLWDTAGLERFRS- 77 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCE---------------EEEEEECCSCTTTCGG-
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceE---------------EEEEEEECCCchhhhh-
Confidence 589999999999999999999765543333433334444455666543 6899999999765433
Q ss_pred ccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHHH
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELL 162 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~~ 162 (363)
+ ....++.+|++++|+|....
T Consensus 78 ---l---~~~~~~~a~~~ilv~di~~~----------------------------------------------------- 98 (216)
T 4dkx_A 78 ---L---IPSYIRDSAAAVVVYDITNV----------------------------------------------------- 98 (216)
T ss_dssp ---G---HHHHHTTCSEEEEEEETTCH-----------------------------------------------------
T ss_pred ---H---HHHHhccccEEEEEeecchh-----------------------------------------------------
Confidence 2 23456899999999998421
Q ss_pred HHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 163 KLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 163 ~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
+.++.+..|+.. +... .-...|+++|+||.|+.....-..++.++++.+.+.+++.+||+...
T Consensus 99 ~Sf~~i~~~~~~----------------i~~~-~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~ 161 (216)
T 4dkx_A 99 NSFQQTTKWIDD----------------VRTE-RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGY 161 (216)
T ss_dssp HHHHTHHHHHHH----------------HHHH-HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTB
T ss_pred HHHHHHHHHHHH----------------HHHh-cCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCc
Confidence 122222233221 1111 11456999999999964211223456677777788899999999654
Q ss_pred HHhcC
Q psy2401 243 EISDL 247 (363)
Q Consensus 243 ~i~el 247 (363)
+|.++
T Consensus 162 nV~e~ 166 (216)
T 4dkx_A 162 NVKQL 166 (216)
T ss_dssp SHHHH
T ss_pred CHHHH
Confidence 44443
No 91
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.65 E-value=5e-16 Score=136.86 Aligned_cols=83 Identities=20% Similarity=0.188 Sum_probs=56.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|.+|||||||+|+|++........|....+.....+.+++.. ..+.+|||||....
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~--- 90 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGER---------------TVLQLWDTAGQERF--- 90 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEE---------------EEEEEEECTTCTTC---
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEE---------------EEEEEEECCCCcch---
Confidence 689999999999999999999865443333333334444556666543 57999999996432
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.......++.+|++++|+|+.
T Consensus 91 ----~~~~~~~~~~~d~iilv~d~~ 111 (199)
T 2p5s_A 91 ----RSIAKSYFRKADGVLLLYDVT 111 (199)
T ss_dssp ----HHHHHHHHHHCSEEEEEEETT
T ss_pred ----hhhHHHHHhhCCEEEEEEECC
Confidence 224445668899999999985
No 92
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=8.5e-16 Score=134.92 Aligned_cols=81 Identities=20% Similarity=0.177 Sum_probs=56.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|.+|||||||+|+|++...... ++.++.......+.+++.. ..+.+|||||...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~---- 88 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKRFIWE-YDPTLESTYRHQATIDDEV---------------VSMEILDTAGQED---- 88 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSC-CCTTCCEEEEEEEEETTEE---------------EEEEEEECCCCCC----
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc-cCCCCCceEEEEEEECCEE---------------EEEEEEECCCCCc----
Confidence 6899999999999999999998654322 2222222223334555432 6799999999765
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. ......++.+|++++|+|++
T Consensus 89 -~---~~~~~~~~~~d~iilv~D~~ 109 (196)
T 2atv_A 89 -T---IQREGHMRWGEGFVLVYDIT 109 (196)
T ss_dssp -C---HHHHHHHHHCSEEEEEEETT
T ss_pred -c---cchhhhhccCCEEEEEEECc
Confidence 1 23345568899999999985
No 93
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=8.8e-16 Score=130.65 Aligned_cols=82 Identities=17% Similarity=0.176 Sum_probs=54.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++........|... ......+..++.. ..+.+|||||..+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~---------------~~~~~~Dt~G~~~~~-- 65 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSI---------------CTLQITDTTGSHQFP-- 65 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC-EEEEEEEEETTEE---------------EEEEEEECCSCSSCH--
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcc-ccEEEEEEECCEE---------------EEEEEEECCCchhhH--
Confidence 6899999999999999999998654332222111 1111223333322 578999999965432
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
......++.+|++++|+|++
T Consensus 66 -----~~~~~~~~~~~~~i~v~d~~ 85 (172)
T 2erx_A 66 -----AMQRLSISKGHAFILVYSIT 85 (172)
T ss_dssp -----HHHHHHHHHCSEEEEEEETT
T ss_pred -----HHHHHhcccCCEEEEEEECc
Confidence 23344567899999999985
No 94
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.65 E-value=1.1e-15 Score=133.82 Aligned_cols=80 Identities=21% Similarity=0.262 Sum_probs=56.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccc-cCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISA-ENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~-~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.+|+++|.+|||||||+++|++..... ...| |.......+...+ ..+.+|||||......
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~--t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~~ 78 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITA--TVGYNVETFEKGR-----------------VAFTVFDMGGAKKFRG 78 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC----CCCC--CSSEEEEEEEETT-----------------EEEEEEEECCSGGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCccccccc--ccceeEEEEEeCC-----------------EEEEEEECCCCHhHHH
Confidence 689999999999999999999875544 2222 3334444454444 7899999999754332
Q ss_pred cccchhhHHHhhccccCEEEEEEeccc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.....++.+|++++|+|+++
T Consensus 79 -------~~~~~~~~~d~ii~v~D~~~ 98 (199)
T 4bas_A 79 -------LWETYYDNIDAVIFVVDSSD 98 (199)
T ss_dssp -------GGGGGCTTCSEEEEEEETTC
T ss_pred -------HHHHHHhcCCEEEEEEECCc
Confidence 23355689999999999953
No 95
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.65 E-value=1.1e-16 Score=159.62 Aligned_cols=89 Identities=25% Similarity=0.372 Sum_probs=62.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcC-CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKL-KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~-~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
+++|+++|+||||||||+|+|++. .+.++++|++|.+.....+.+++ .++.+|||||+.+..
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g-----------------~~v~liDT~G~~~~~ 286 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG-----------------IPVQVLDTAGIRETS 286 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT-----------------EEEEECC--------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC-----------------EEEEEEECCccccch
Confidence 468999999999999999999987 45588999999999888888888 678999999986644
Q ss_pred Ccccchh-hHHHhhccccCEEEEEEecc
Q psy2401 81 SKGEGLG-NKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 81 ~~~~~l~-~~~l~~~~~aD~il~Vvda~ 107 (363)
...+.++ ...+..++.+|++++|+|++
T Consensus 287 ~~ve~~gi~~~~~~~~~aD~vl~VvD~s 314 (462)
T 3geh_A 287 DQVEKIGVERSRQAANTADLVLLTIDAA 314 (462)
T ss_dssp ------------CCCCSCSEEEEEEETT
T ss_pred hHHHHHHHHHHhhhhhcCCEEEEEeccC
Confidence 3333221 34566788999999999985
No 96
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=1.4e-15 Score=132.46 Aligned_cols=79 Identities=27% Similarity=0.343 Sum_probs=56.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.+|+++|.+|||||||+|+|++.... ...| |.......+.+++ ..+.+|||||..+...
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~~- 75 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMNEVV-HTSP--TIGSNVEEIVINN-----------------TRFLMWDIGGQESLRS- 75 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSCE-EEEC--CSCSSCEEEEETT-----------------EEEEEEECCC----CG-
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-cCcC--CCccceEEEEECC-----------------EEEEEEECCCCHhHHH-
Confidence 68999999999999999999975433 2222 4445555666665 7899999999865433
Q ss_pred ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.....++.+|++++|+|+++
T Consensus 76 ------~~~~~~~~~d~ii~v~d~~~ 95 (187)
T 1zj6_A 76 ------SWNTYYTNTEFVIVVVDSTD 95 (187)
T ss_dssp ------GGHHHHTTCCEEEEEEETTC
T ss_pred ------HHHHHhcCCCEEEEEEeCCC
Confidence 22345588999999999953
No 97
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.65 E-value=1.6e-15 Score=128.51 Aligned_cols=78 Identities=22% Similarity=0.280 Sum_probs=57.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|++|||||||+|++++.... ...| |.......+.+.+ ..+.+|||||....
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~--- 57 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDKI--- 57 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS-CCCC--CSSCCEEEEECSS-----------------CEEEEEECCCCGGG---
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC-cccC--cCceeEEEEEECC-----------------EEEEEEEcCCChhh---
Confidence 58999999999999999999875432 2333 4445555566554 67999999997432
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.......++.+|++++|+|++
T Consensus 58 ----~~~~~~~~~~~d~~i~v~d~~ 78 (164)
T 1r8s_A 58 ----RPLWRHYFQNTQGLIFVVDSN 78 (164)
T ss_dssp ----HHHHHHHTTTCSEEEEEEETT
T ss_pred ----HHHHHHHhccCCEEEEEEECC
Confidence 123345678999999999985
No 98
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.65 E-value=1.3e-15 Score=132.09 Aligned_cols=78 Identities=26% Similarity=0.319 Sum_probs=57.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc-ccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS-AENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~-~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
++|+++|.+|||||||+|+|++.... ..+ |.......+.+++ ..+.+|||||......
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~~ 80 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNEVVHTSP----TIGSNVEEIVINN-----------------TRFLMWDIGGQESLRS 80 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTSCEEEEC----CSSSSCEEEEETT-----------------EEEEEEEESSSGGGTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCccCC----cCceeeEEEEECC-----------------EEEEEEECCCCHhHHH
Confidence 68999999999999999999986541 122 3333445566655 7899999999855433
Q ss_pred cccchhhHHHhhccccCEEEEEEeccc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.....++.+|++++|+|+.+
T Consensus 81 -------~~~~~~~~~d~ii~v~D~~~ 100 (181)
T 2h17_A 81 -------SWNTYYTNTEFVIVVVDSTD 100 (181)
T ss_dssp -------GGGGGGTTCCEEEEEEETTC
T ss_pred -------HHHHHhccCCEEEEEEECCC
Confidence 23455689999999999853
No 99
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.64 E-value=1.6e-16 Score=157.66 Aligned_cols=91 Identities=23% Similarity=0.315 Sum_probs=56.7
Q ss_pred CC-cEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccC
Q psy2401 1 MN-LKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVS 78 (363)
Q Consensus 1 m~-~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 78 (363)
|+ .+|+|+|+||||||||+|+|++.. +.++++|++|.+...+.+.+.+ ..+.+|||||+..
T Consensus 1 m~~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~-----------------~~~~l~DT~G~~~ 63 (436)
T 2hjg_A 1 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN-----------------YDFNLIDTGGIDI 63 (436)
T ss_dssp --CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS-----------------SCCEEEC------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC-----------------ceEEEEECCCCCC
Confidence 53 689999999999999999999984 4588999999999988888877 5789999999864
Q ss_pred CCCc-ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 79 GASK-GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 79 ~~~~-~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.... .+.+..+....++.||++++|+|++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~ 94 (436)
T 2hjg_A 64 GDEPFLAQIRQQAEIAMDEADVIIFMVNGRE 94 (436)
T ss_dssp ---CHHHHHHHHHHHHHHHCSEEEEEEETTT
T ss_pred cchhHHHHHHHHHHHHHHhCCEEEEEEeCCC
Confidence 3221 12334455677899999999999853
No 100
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.64 E-value=9.6e-17 Score=141.46 Aligned_cols=163 Identities=17% Similarity=0.146 Sum_probs=75.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCc-cccCCCcee-ecceeEEEEeCCc--cccccccccccccccceeEEEEeeecccC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKI-SAENYPFCT-IEPNIGIIEVPDK--RLKHLNNIVKTKKIFPAIIKLVDIAGLVS 78 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~-~~~~~p~~t-~~~~~g~v~~~~~--~~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 78 (363)
++|+++|++|||||||+|+|++... ....++.++ .+.....+.+++. . ..+.+|||||...
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~ 85 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVS---------------VELFLLDTAGSDL 85 (208)
T ss_dssp EEEEEC----------------------------------CEEEECTTSSEE---------------EEEEEEETTTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccE---------------EEEEEEECCCcHH
Confidence 5899999999999999999998622 223333333 3566667777653 2 6799999999743
Q ss_pred CCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchh
Q psy2401 79 GASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHS 158 (363)
Q Consensus 79 ~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~ 158 (363)
. .......++.+|++++|+|+.+..
T Consensus 86 ~-------~~~~~~~~~~~d~~i~v~d~~~~~------------------------------------------------ 110 (208)
T 2yc2_C 86 Y-------KEQISQYWNGVYYAILVFDVSSME------------------------------------------------ 110 (208)
T ss_dssp H-------HHHHSTTCCCCCEEEEEEETTCHH------------------------------------------------
T ss_pred H-------HHHHHHHHhhCcEEEEEEECCCHH------------------------------------------------
Confidence 2 123445678999999999985310
Q ss_pred HHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcc--cccccEEEeccccccCC-CchHHHHHHHHHHhcCCCcEEE
Q psy2401 159 IELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNL--LTIKPIIFVANVKENGF-KNNLLLDQLKIYAHNQNIPIII 235 (363)
Q Consensus 159 ~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~--l~~kp~i~v~Nk~d~~~-~~~~~~~~i~~~~~~~~~~~i~ 235 (363)
.++.+..|+. .+..... ...+|+++|+||.|... ......+.+++++...+.++++
T Consensus 111 -----s~~~~~~~~~----------------~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~ 169 (208)
T 2yc2_C 111 -----SFESCKAWFE----------------LLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFD 169 (208)
T ss_dssp -----HHHHHHHHHH----------------HHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEE
T ss_pred -----HHHHHHHHHH----------------HHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEE
Confidence 0111111111 0111110 24789999999999641 1112245667777778889999
Q ss_pred eeHHH-HHHHhcCCHHHHHHHH
Q psy2401 236 ICAKL-EEEISDLNNIDKKFFL 256 (363)
Q Consensus 236 ~sa~~-e~~i~el~~~~~~~~l 256 (363)
+||+. ..++.++.+...+.++
T Consensus 170 ~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 170 VSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp CCC-------CHHHHHHHHHHH
T ss_pred eccCCCCcCHHHHHHHHHHHHH
Confidence 99998 8887776554444333
No 101
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.64 E-value=1.9e-15 Score=132.05 Aligned_cols=85 Identities=22% Similarity=0.268 Sum_probs=52.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC--ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK--ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~--~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
.+|+++|++|||||||+|+|++.. ...++.|++|....... ++ ..+.+|||||+....
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~------------------~~~~l~Dt~G~~~~~ 83 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--IN------------------DELHFVDVPGYGFAK 83 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--ET------------------TTEEEEECCCBCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--EC------------------CcEEEEECCCCCccc
Confidence 689999999999999999999874 34567777776654332 22 358999999976543
Q ss_pred Cc------ccchhhHHHhhccccCEEEEEEecc
Q psy2401 81 SK------GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 81 ~~------~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.. ...+...++.....+|++++|+|+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~ 116 (195)
T 1svi_A 84 VSKSEREAWGRMIETYITTREELKAVVQIVDLR 116 (195)
T ss_dssp SCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETT
T ss_pred cCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECC
Confidence 21 1112234444445559999999985
No 102
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.64 E-value=2.3e-15 Score=131.79 Aligned_cols=82 Identities=22% Similarity=0.230 Sum_probs=57.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.+|||||||+|++++.... ..+..++.......+.+++.. ..+.+|||||......
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 86 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGEIP-TAYVPTVFENFSHVMKYKNEE---------------FILHLWDTAGQEEYDR- 86 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCSGGGTT-
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCC-CccCCeeeeeeEEEEEECCEE---------------EEEEEEECCCcHHHHH-
Confidence 68999999999999999999986543 233333333333345555533 5689999999654332
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 87 ------~~~~~~~~~d~~i~v~d~~ 105 (194)
T 3reg_A 87 ------LRPLSYADSDVVLLCFAVN 105 (194)
T ss_dssp ------TGGGGCTTCSEEEEEEETT
T ss_pred ------HhHhhccCCcEEEEEEECC
Confidence 2335668899999999985
No 103
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.64 E-value=1.4e-15 Score=141.44 Aligned_cols=63 Identities=22% Similarity=0.368 Sum_probs=40.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCC------ceeecceeEEEEe--CCccccccccccccccccceeEEEEeee
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYP------FCTIEPNIGIIEV--PDKRLKHLNNIVKTKKIFPAIIKLVDIA 74 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p------~~t~~~~~g~v~~--~~~~~~~l~~~~~~~~~~~~~i~lvDtp 74 (363)
++|+++|.+|+|||||+|+|++.......+| ..|..+......+ ++.+ ..+.+||||
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~liDTp 73 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQ---------------LLLTIVDTP 73 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CC---------------EEEEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeE---------------EEEEEEECC
Confidence 6899999999999999999998866655553 3444444444433 3322 479999999
Q ss_pred cccCCC
Q psy2401 75 GLVSGA 80 (363)
Q Consensus 75 Gl~~~~ 80 (363)
|+.+..
T Consensus 74 G~~d~~ 79 (274)
T 3t5d_A 74 GFGDAV 79 (274)
T ss_dssp CCSCCS
T ss_pred Cccccc
Confidence 996543
No 104
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.64 E-value=1.7e-15 Score=132.18 Aligned_cols=76 Identities=21% Similarity=0.165 Sum_probs=55.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.+|||||||+|++++........| |.......+.+++.. ..+.+|||||....
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~--- 80 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEESP--EGGRFKKEIVVDGQS---------------YLLLIRDEGGPPEL--- 80 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSSCCCCCCT--TCEEEEEEEEETTEE---------------EEEEEEECSSSCCH---
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--CcceEEEEEEECCEE---------------EEEEEEECCCChhh---
Confidence 6999999999999999999998654433223 222223456666643 67889999996421
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. .++.+|++++|+|++
T Consensus 81 ------~---~~~~~~~~i~v~d~~ 96 (184)
T 3ihw_A 81 ------Q---FAAWVDAVVFVFSLE 96 (184)
T ss_dssp ------H---HHHHCSEEEEEEETT
T ss_pred ------h---eecCCCEEEEEEECc
Confidence 1 557899999999985
No 105
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.64 E-value=2.2e-15 Score=133.52 Aligned_cols=82 Identities=21% Similarity=0.221 Sum_probs=59.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.+|||||||++++++... ...++.++.+.....+.+++.. ..+.+|||||......
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~- 93 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKP---------------VNLGLWDTAGLEDYDR- 93 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CC-CCCCSEEEEEEEEECC-CE---------------EEEEEEEECCSGGGTT-
T ss_pred EEEEEECcCCCCHHHHHHHHHhCCC-CCCcCCeecceeEEEEEECCEE---------------EEEEEEECCCchhhHH-
Confidence 6899999999999999999997543 3344445544445556665533 5678999999854432
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 94 ------~~~~~~~~~d~~i~v~d~~ 112 (204)
T 4gzl_A 94 ------LRPLSYPQTDVFLICFSLV 112 (204)
T ss_dssp ------TGGGGCTTCSEEEEEEETT
T ss_pred ------HHHHHhccCCEEEEEEECC
Confidence 2334668999999999985
No 106
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.64 E-value=2.1e-15 Score=131.62 Aligned_cols=79 Identities=24% Similarity=0.322 Sum_probs=56.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|.+|||||||+|+|++........| |.......+...+ ..+.+|||||......
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~~~- 82 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIP--TVGFNMRKITKGN-----------------VTIKLWDIGGQPRFRS- 82 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCC--CCSEEEEEEEETT-----------------EEEEEEEECCSHHHHT-
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCCCCccCC--CCceeEEEEEeCC-----------------EEEEEEECCCCHhHHH-
Confidence 6899999999999999999998654433333 3333444455444 7899999999653221
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 83 ------~~~~~~~~~d~ii~v~D~~ 101 (188)
T 1zd9_A 83 ------MWERYCRGVSAIVYMVDAA 101 (188)
T ss_dssp ------THHHHHTTCSEEEEEEETT
T ss_pred ------HHHHHHccCCEEEEEEECC
Confidence 2334568899999999985
No 107
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.64 E-value=2.8e-15 Score=141.96 Aligned_cols=89 Identities=16% Similarity=0.078 Sum_probs=67.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcC-CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKL-KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~-~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
.+||+++|.+|||||||+|++++. ...+++++++|++...+.+.+.+. ..+.+|||||.....
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~----------------~~l~i~Dt~G~~~~~ 66 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGN----------------MTLNLWDCGGQDVFM 66 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTT----------------EEEEEEEECCSHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCc----------------eEEEEEECCCcHHHh
Confidence 368999999999999999999886 455678899999999988887542 789999999975431
Q ss_pred CcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 81 SKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 81 ~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
... +.......++.+|++++|+|+.+
T Consensus 67 ~~~--~~~~~~~~~~~ad~vi~V~D~t~ 92 (307)
T 3r7w_A 67 ENY--FTKQKDHIFQMVQVLIHVFDVES 92 (307)
T ss_dssp HHH--HTTTHHHHHTTCSEEEEEEETTC
T ss_pred hhh--hhhHHHHHhccCCEEEEEEECCC
Confidence 000 00122344588999999999953
No 108
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.64 E-value=2.3e-15 Score=131.06 Aligned_cols=85 Identities=22% Similarity=0.244 Sum_probs=60.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.+|+++|.+|||||||+|+|++.. ...++.+++|........ + ..+.+|||||+.....
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~---~-----------------~~~~i~Dt~G~~~~~~ 83 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV---N-----------------SKYYFVDLPGYGYAKV 83 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE---T-----------------TTEEEEECCCBSSSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE---C-----------------CcEEEEECCCCccccC
Confidence 689999999999999999999875 446677777765543222 2 4578999999754322
Q ss_pred c------ccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 K------GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~------~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. ...+...++.....+|++++|+|+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~ 115 (195)
T 3pqc_A 84 SKKERMLWKRLVEDYFKNRWSLQMVFLLVDGR 115 (195)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETT
T ss_pred ChhhHHHHHHHHHHHHhcCcCceEEEEEecCC
Confidence 1 1122334555556679999999984
No 109
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.63 E-value=2e-15 Score=131.87 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=54.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.+|||||||++++++.... ..++.++.......+.+++.. ..+.+|||||......
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~- 84 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKRFI-SEYDPNLEDTYSSEETVDHQP---------------VHLRVMDTADLDTPRN- 84 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCC---CCC-
T ss_pred EEEEEECCCCCcHHHHHHHHHhCCCC-cccCCCccceeeEEEEECCEE---------------EEEEEEECCCCCcchh-
Confidence 68999999999999999999986532 333333322222334444432 6789999999765432
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+ ...++.+|++++|+|+.
T Consensus 85 ---~----~~~~~~~~~~ilv~d~~ 102 (187)
T 3c5c_A 85 ---C----ERYLNWAHAFLVVYSVD 102 (187)
T ss_dssp ---T----HHHHTTCSEEEEEEETT
T ss_pred ---H----HHHHhhCCEEEEEEECC
Confidence 2 23558899999999984
No 110
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.63 E-value=3.5e-17 Score=144.36 Aligned_cols=83 Identities=23% Similarity=0.179 Sum_probs=64.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.+|||||||+|+|++........|+++.+.....+.+++.. ..+.+|||||.......
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~~ 98 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKT---------------IKLQIWDTAGQERFRTI 98 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEE---------------EEEEEECCTTCTTCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEE---------------EEEEEEECCCcHhHHHH
Confidence 689999999999999999999876666666777777777788887743 57999999996554432
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
....++.+|++++|+|+.
T Consensus 99 -------~~~~~~~~d~~i~v~d~~ 116 (199)
T 3l0i_B 99 -------TSSYYRGAHGIIVVYDVT 116 (199)
T ss_dssp -------SCC--CCCSEEEECC-CC
T ss_pred -------HHHHhhcCCEEEEEEECC
Confidence 224568899999999985
No 111
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.63 E-value=1.8e-15 Score=158.01 Aligned_cols=226 Identities=17% Similarity=0.112 Sum_probs=151.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC---Cc---c------ccC------CCceeecceeEEEEeCCcccccccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL---KI---S------AEN------YPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIF 64 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~---~~---~------~~~------~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~ 64 (363)
.+|+|+|++|+|||||+++|+.. .. . +.+ .++.|+......+.+.+
T Consensus 13 ~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~---------------- 76 (691)
T 1dar_A 13 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD---------------- 76 (691)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT----------------
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC----------------
Confidence 58999999999999999999832 10 1 111 34556666666666665
Q ss_pred ceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHh-h
Q psy2401 65 PAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEK-Y 143 (363)
Q Consensus 65 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~-~ 143 (363)
..+++|||||..++. ......++.+|++++|+|+.++. ..+++..|..+..... .
T Consensus 77 -~~i~liDTPG~~df~-------~~~~~~l~~aD~~ilVvDa~~g~----------------~~~t~~~~~~~~~~~~p~ 132 (691)
T 1dar_A 77 -HRINIIDTPGHVDFT-------IEVERSMRVLDGAIVVFDSSQGV----------------EPQSETVWRQAEKYKVPR 132 (691)
T ss_dssp -EEEEEECCCSSTTCH-------HHHHHHHHHCSEEEEEEETTTCS----------------CHHHHHHHHHHHHTTCCE
T ss_pred -eEEEEEECcCccchH-------HHHHHHHHHCCEEEEEEECCCCc----------------chhhHHHHHHHHHcCCCE
Confidence 789999999986533 36667788999999999996532 1122333444433333 3
Q ss_pred hhhhhcccccCCchhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhh-cccccccEEEe-c--cccccCCCchHHH
Q psy2401 144 IDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFL-NLLTIKPIIFV-A--NVKENGFKNNLLL 219 (363)
Q Consensus 144 ~~~i~k~~~~g~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~-~~l~~kp~i~v-~--Nk~d~~~~~~~~~ 219 (363)
+..+||+++.+. +...+++.+++.|.....+..+|++.++ .+.++ +++..++..|- - +.......+....
T Consensus 133 ivviNKiD~~~~----~~~~~~~~l~~~l~~~~~~~~~Pi~~~~--~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~ 206 (691)
T 1dar_A 133 IAFANKMDKTGA----DLWLVIRTMQERLGARPVVMQLPIGRED--TFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYL 206 (691)
T ss_dssp EEEEECTTSTTC----CHHHHHHHHHHTTCCCEEECEEEESCGG--GCCEEEETTTTEEEEECSTTSCCEEEECCCGGGH
T ss_pred EEEEECCCcccC----CHHHHHHHHHHHhCCCccceeccccCCC--cccchhhhhcceeeEeccCCCceeEEecCCHHHH
Confidence 567888865432 3556778888888765445556666544 45556 67777777774 1 1111101245556
Q ss_pred HHHHHHHhcCCCcEEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeC
Q psy2401 220 DQLKIYAHNQNIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTV 285 (363)
Q Consensus 220 ~~i~~~~~~~~~~~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~ 285 (363)
+..+++ ..++.+.+++.+++.+++||++..++.+.+...++..+....++|+|..
T Consensus 207 ~~~~~~-----------r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~~Pv~~g 261 (691)
T 1dar_A 207 DQAREY-----------HEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLG 261 (691)
T ss_dssp HHHHHH-----------HHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEEC
T ss_pred HHHHHH-----------HHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCcEeEEEEe
Confidence 666555 5567778999999999999999999999999999999999999999975
No 112
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.63 E-value=2.4e-15 Score=129.87 Aligned_cols=82 Identities=20% Similarity=0.194 Sum_probs=58.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||++++++.... ..+..++.......+.+++.. ..+.+|||||......
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 68 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKP---------------VNLGLWDTAGQEDYDR- 68 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC-SSCCCCSCCEEEEEEEETTEE---------------EEEEEECCCCSGGGTT-
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCcccceeEEEEEECCEE---------------EEEEEEECCCCHhHHH-
Confidence 68999999999999999999975432 333333333333445555533 6788999999865432
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 69 ------~~~~~~~~~d~~i~v~d~~ 87 (186)
T 1mh1_A 69 ------LRPLSYPQTDVSLICFSLV 87 (186)
T ss_dssp ------TGGGGCTTCSEEEEEEETT
T ss_pred ------HHHHhccCCcEEEEEEECC
Confidence 2224568899999999985
No 113
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.63 E-value=1.5e-15 Score=158.69 Aligned_cols=226 Identities=15% Similarity=0.097 Sum_probs=149.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC---Cc---------cccC------CCceeecceeEEEEeCCcccccccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL---KI---------SAEN------YPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIF 64 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~---~~---------~~~~------~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~ 64 (363)
.+|+|+|++|+|||||+|+|++. .. .+.+ .+++|+......+.+.+
T Consensus 11 ~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~---------------- 74 (693)
T 2xex_A 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG---------------- 74 (693)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC----------------
Confidence 58999999999999999999842 11 1122 35667777777777776
Q ss_pred ceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHh-h
Q psy2401 65 PAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEK-Y 143 (363)
Q Consensus 65 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~-~ 143 (363)
..+++|||||+.++.. .....++.+|++++|+|+.++.. ..++..|..+..... .
T Consensus 75 -~~i~liDTPG~~df~~-------~~~~~l~~aD~~llVvDa~~g~~----------------~~~~~~~~~~~~~~~p~ 130 (693)
T 2xex_A 75 -HRVNIIDTPGHVDFTV-------EVERSLRVLDGAVTVLDAQSGVE----------------PQTETVWRQATTYGVPR 130 (693)
T ss_dssp -EEEEEECCCCCSSCCH-------HHHHHHHHCSEEEEEEETTTBSC----------------HHHHHHHHHHHHTTCCE
T ss_pred -eeEEEEECcCCcchHH-------HHHHHHHHCCEEEEEECCCCCCc----------------HHHHHHHHHHHHcCCCE
Confidence 7899999999876443 56677789999999999964321 122333433333333 3
Q ss_pred hhhhhcccccCCchhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhh-cccccccEEEe-c--cccccCCCchHHH
Q psy2401 144 IDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFL-NLLTIKPIIFV-A--NVKENGFKNNLLL 219 (363)
Q Consensus 144 ~~~i~k~~~~g~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~-~~l~~kp~i~v-~--Nk~d~~~~~~~~~ 219 (363)
+..+||++..+. +...+++.+++.|.....+..+|++.++ .+.++ +.+..++..|- - ...+....+....
T Consensus 131 ilviNK~Dl~~~----~~~~~~~~l~~~l~~~~~~~~ipisa~~--~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (693)
T 2xex_A 131 IVFVNKMDKLGA----NFEYSVSTLHDRLQANAAPIQLPIGAED--EFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHL 204 (693)
T ss_dssp EEEEECTTSTTC----CHHHHHHHHHHHHCCCEEESEEEECCGG--GCCEEEETTTTEEEECCSSSSCSCEEECCCGGGH
T ss_pred EEEEECCCcccc----chHHHHHHHHHHhCCCceeEEeecccCC--CcceeeeeecceeEEeccCCCceeEEecCCHHHH
Confidence 567888865432 2456778888888765444455666543 34545 56666666653 1 1111101234455
Q ss_pred HHHHHHHhcCCCcEEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeC
Q psy2401 220 DQLKIYAHNQNIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTV 285 (363)
Q Consensus 220 ~~i~~~~~~~~~~~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~ 285 (363)
+..+.+ +.++-+.+++.+++.+++||++..++.+.+...+++.+....+.|+|..
T Consensus 205 ~~~e~~-----------r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~g 259 (693)
T 2xex_A 205 DRAEEA-----------RASLIEAVAETSDELMEKYLGDEEISVSELKEAIRQATTNVEFYPVLCG 259 (693)
T ss_dssp HHHHHH-----------HHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSCEEEEEC
T ss_pred HHHHHH-----------HHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeeEEEe
Confidence 444444 5567778899999999999999999999999999999999999999965
No 114
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.63 E-value=2.7e-15 Score=132.01 Aligned_cols=82 Identities=21% Similarity=0.249 Sum_probs=56.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|.+|||||||++++++.. ....++.++.......+.+++.. ..+.+|||||.......
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~~ 84 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPTAFDNFSAVVSVDGRP---------------VRLQLCDTAGQDEFDKL 84 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEE---------------EEEEEEECCCSTTCSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEECCEE---------------EEEEEEECCCCHHHHHH
Confidence 689999999999999999999865 33455555544444556666532 57889999998654432
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. ...++++|++++|+|++
T Consensus 85 ~-------~~~~~~~~~~i~v~d~~ 102 (201)
T 2q3h_A 85 R-------PLCYTNTDIFLLCFSVV 102 (201)
T ss_dssp G-------GGGGTTCSEEEEEEETT
T ss_pred h-------HhhcCCCcEEEEEEECC
Confidence 1 23568899999999985
No 115
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.63 E-value=2.1e-15 Score=129.82 Aligned_cols=76 Identities=18% Similarity=0.154 Sum_probs=55.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.+|||||||++++++..... ..| ++.......+.+++.. ..+.+|||||...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~-t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~---- 66 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQV-LEK-TESEQYKKEMLVDGQT---------------HLVLIREEAGAPD---- 66 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCC-CSS-CSSSEEEEEEEETTEE---------------EEEEEEECSSSCC----
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-cCC-CcceeEEEEEEECCEE---------------EEEEEEECCCCch----
Confidence 689999999999999999999865432 223 2222234445555533 6789999999643
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
...++++|++++|+|+.
T Consensus 67 --------~~~~~~~d~~ilv~D~~ 83 (178)
T 2iwr_A 67 --------AKFSGWADAVIFVFSLE 83 (178)
T ss_dssp --------HHHHHHCSEEEEEEETT
T ss_pred --------hHHHHhCCEEEEEEECc
Confidence 23457899999999985
No 116
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.63 E-value=4.9e-15 Score=126.18 Aligned_cols=79 Identities=23% Similarity=0.336 Sum_probs=58.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|+|++.... ...| |.......+.+++ ..+.+|||||......
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~-----------------~~~~~~Dt~G~~~~~~- 66 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGEVV-TTIP--TIGFNVETVTYKN-----------------LKFQVWDLGGLTSIRP- 66 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC-CCCC--CSSEEEEEEEETT-----------------EEEEEEEECCCGGGGG-
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CcCC--cCccceEEEEECC-----------------EEEEEEECCCChhhhH-
Confidence 68999999999999999999875432 2222 3344455566654 7899999999754322
Q ss_pred ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.....++.+|++++|+|+.+
T Consensus 67 ------~~~~~~~~~d~ii~v~d~~~ 86 (171)
T 1upt_A 67 ------YWRCYYSNTDAVIYVVDSCD 86 (171)
T ss_dssp ------GGGGGCTTCSEEEEEEETTC
T ss_pred ------HHHHHhccCCEEEEEEECCC
Confidence 33456689999999999853
No 117
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.63 E-value=1.6e-15 Score=130.96 Aligned_cols=79 Identities=23% Similarity=0.317 Sum_probs=54.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|++++... ....| |.......+.+++ ..+.+|||||......
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~~~~-~~~~~--t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~~- 77 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQIGEV-VTTKP--TIGFNVETLSYKN-----------------LKLNVWDLGGQTSIRP- 77 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSEE-EEECS--STTCCEEEEEETT-----------------EEEEEEEEC----CCT-
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCc-CccCC--cCccceEEEEECC-----------------EEEEEEECCCCHhHHH-
Confidence 6899999999999999999997543 11112 3334445566655 6899999999865443
Q ss_pred ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.....++.+|++++|+|+++
T Consensus 78 ------~~~~~~~~~d~ii~v~d~~~ 97 (183)
T 1moz_A 78 ------YWRCYYADTAAVIFVVDSTD 97 (183)
T ss_dssp ------TGGGTTTTEEEEEEEEETTC
T ss_pred ------HHHHHhccCCEEEEEEECCC
Confidence 22355688999999999853
No 118
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=2.8e-15 Score=131.18 Aligned_cols=81 Identities=21% Similarity=0.217 Sum_probs=54.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecce-eEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPN-IGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~-~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
++|+++|.+|||||||+|+|++........| |.... ...+.+++.. ..+.+|||||.....
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~- 70 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGTFRDTYIP--TIEDTYRQVISCDKSV---------------CTLQITDTTGSHQFP- 70 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCTTSC--CCCEEEEEEEEETTEE---------------EEEEEEECCGGGSCH-
T ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCcccC--ccccceeEEEEECCEE---------------EEEEEEeCCChHHhH-
Confidence 6899999999999999999998644322222 21111 1223333322 579999999965432
Q ss_pred cccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
......++.+|++++|+|++
T Consensus 71 ------~~~~~~~~~~d~~i~v~d~~ 90 (199)
T 2gf0_A 71 ------AMQRLSISKGHAFILVFSVT 90 (199)
T ss_dssp ------HHHHHHHHHCSEEEEEEETT
T ss_pred ------HHHHHhhccCCEEEEEEECc
Confidence 13334567899999999985
No 119
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.62 E-value=3.5e-15 Score=131.01 Aligned_cols=78 Identities=22% Similarity=0.290 Sum_probs=53.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|++++.... ...| |.......+.+.+ ..+.+|||||......
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~--t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~~- 88 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKN-----------------ICFTVWDVGGQDKIRP- 88 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSSCCE-EEEE--ETTEEEEEEEETT-----------------EEEEEEECC-----CT-
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCcc-ccCC--cCceeEEEEEECC-----------------EEEEEEECCCCHhHHH-
Confidence 68999999999999999999875432 2222 4444445555554 7899999999865433
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 89 ------~~~~~~~~~d~iilv~D~~ 107 (192)
T 2b6h_A 89 ------LWRHYFQNTQGLIFVVDSN 107 (192)
T ss_dssp ------THHHHHHTCCEEEEEEETT
T ss_pred ------HHHHHhccCCEEEEEEECC
Confidence 2234558899999999985
No 120
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=4.8e-15 Score=129.62 Aligned_cols=82 Identities=21% Similarity=0.234 Sum_probs=60.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+++|++... ...++.++.......+.+++.. ..+.+|||||..+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~~- 81 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGGKQ---------------YLLGLYDTAGQEDYDR- 81 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEEEEESSSCE---------------EEEEEECCCCSSSSTT-
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEECCEE---------------EEEEEEECCCCcchhH-
Confidence 5899999999999999999998643 2344444444444556665543 6789999999765443
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 82 ------~~~~~~~~~d~~i~v~d~~ 100 (194)
T 2atx_A 82 ------LRPLSYPMTDVFLICFSVV 100 (194)
T ss_dssp ------TGGGGCTTCSEEEEEEETT
T ss_pred ------HHHHhcCCCCEEEEEEECC
Confidence 2234568899999999984
No 121
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.62 E-value=3.1e-15 Score=148.47 Aligned_cols=182 Identities=19% Similarity=0.203 Sum_probs=112.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.+++|+|+||||||||+|+|++.. ..++++|++|.++..+.+.++| ..+.+|||||+.....
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g-----------------~~~~l~Dt~G~~~~~~ 243 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG-----------------RKYVFVDTAGLRRKSR 243 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT-----------------EEEEESSCSCC-----
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC-----------------EEEEEEECCCCccccc
Confidence 589999999999999999999974 5689999999999999999998 5689999999854322
Q ss_pred cc----cch-hhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCc
Q psy2401 82 KG----EGL-GNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNE 156 (363)
Q Consensus 82 ~~----~~l-~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~ 156 (363)
.. +.+ ....+..++.+|++++|+|+.... .
T Consensus 244 ~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~------------~--------------------------------- 278 (439)
T 1mky_A 244 VEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGI------------T--------------------------------- 278 (439)
T ss_dssp ------CCSCCHHHHHHHHHCSEEEEEEETTTCC------------C---------------------------------
T ss_pred cchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCC------------C---------------------------------
Confidence 11 111 123456778899999999985321 0
Q ss_pred hhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHH----HHHHHHh-cCCC
Q psy2401 157 HSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLD----QLKIYAH-NQNI 231 (363)
Q Consensus 157 ~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~----~i~~~~~-~~~~ 231 (363)
..+..... +.....+|+++++||.|.........+ .+.+.+. ..+.
T Consensus 279 ----------------------------~~~~~i~~-~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (439)
T 1mky_A 279 ----------------------------RQDQRMAG-LMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYS 329 (439)
T ss_dssp ----------------------------HHHHHHHH-HHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTS
T ss_pred ----------------------------HHHHHHHH-HHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCC
Confidence 00000000 101157899999999996421111122 2222222 2356
Q ss_pred cEEEeeHHHHHHHhcCCHHHHHHHHhh-cCCCchhHHHHHHHHHH
Q psy2401 232 PIIIICAKLEEEISDLNNIDKKFFLDN-LGLKETKLNDLIRASFS 275 (363)
Q Consensus 232 ~~i~~sa~~e~~i~el~~~~~~~~l~~-~~l~~~~l~~l~~~~~~ 275 (363)
+++++||+...++.++.+...+.+-+. .-+..+.+++++..+..
T Consensus 330 ~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~ 374 (439)
T 1mky_A 330 PLIFTSADKGWNIDRMIDAMNLAYASYTTKVPSSAINSALQKVLA 374 (439)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHH
Confidence 899999999888887765444433322 23455667788887665
No 122
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.62 E-value=4e-15 Score=135.30 Aligned_cols=88 Identities=16% Similarity=0.090 Sum_probs=64.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCC--ceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYP--FCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p--~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
++|+|+|++|||||||+|+|++.....+.+| ++|..+..+.+.+++ ..+.+|||||+.+..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~i~liDTpG~~~~~ 92 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE-----------------TELVVVDTPGIFDTE 92 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT-----------------EEEEEEECCSCC---
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC-----------------ceEEEEECCCccCCC
Confidence 6899999999999999999999877767666 788888888888887 679999999998765
Q ss_pred Ccccch----hhHHHhhccccCEEEEEEecc
Q psy2401 81 SKGEGL----GNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 81 ~~~~~l----~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....+ .+.+....+.+|++|+|+|+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~ 123 (239)
T 3lxx_A 93 VPNAETSKEIIRCILLTSPGPHALLLVVPLG 123 (239)
T ss_dssp --CHHHHHHHHHHHHHTTTCCSEEEEEEETT
T ss_pred CCHHHHHHHHHHHHHhcCCCCcEEEEEeeCC
Confidence 443322 233344456789999999984
No 123
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.62 E-value=3.4e-15 Score=132.60 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=59.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|.+|||||||++++++.... ..++.++.......+.+++.. ..+.+|||||.......
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~~ 73 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVAVDGQI---------------VNLGLWDTAGQEDYSRL 73 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCSSCCCEEEEEECSSCE---------------EEEEEECCCCCCCCCC-
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCccceeEEEEEEECCEE---------------EEEEEEECCCcHHHHHH
Confidence 68999999999999999999976542 344444444444455565533 67999999998655432
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
....++.+|++++|+|+.
T Consensus 74 -------~~~~~~~~d~~ilv~d~~ 91 (212)
T 2j0v_A 74 -------RPLSYRGADIFVLAFSLI 91 (212)
T ss_dssp --------CGGGTTCSEEEEEEETT
T ss_pred -------HHhhccCCCEEEEEEECC
Confidence 224568899999999985
No 124
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.61 E-value=3.4e-16 Score=154.35 Aligned_cols=88 Identities=25% Similarity=0.222 Sum_probs=65.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCc-cccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKI-SAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~-~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
++|+++|++|+|||||+|+|++... .+++++++|.++....+.+.+. ..+.+|||||+.++..
T Consensus 35 ~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~----------------~~l~liDTpG~~d~~~ 98 (423)
T 3qq5_A 35 RYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI----------------GPVTLVDTPGLDDVGE 98 (423)
T ss_dssp EEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT----------------EEEEEEECSSTTCCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC----------------CeEEEEECcCCCcccc
Confidence 5899999999999999999999854 5788999999999999988773 3799999999988766
Q ss_pred cccchhhHHHhhccccCEEEEEEec
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRC 106 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda 106 (363)
.+..........++.+|++++|+|+
T Consensus 99 l~~~~~~~~~~~l~~aD~vllVvD~ 123 (423)
T 3qq5_A 99 LGRLRVEKARRVFYRADCGILVTDS 123 (423)
T ss_dssp TCCCCHHHHHHHHTSCSEEEEECSS
T ss_pred hhHHHHHHHHHHHhcCCEEEEEEeC
Confidence 5554455677788999999999998
No 125
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.61 E-value=1.4e-15 Score=131.15 Aligned_cols=82 Identities=20% Similarity=0.195 Sum_probs=48.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||++++++.... ..++.++.......+.+++.. ..+++|||||......
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 71 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGAT---------------VNLGLWDTAGQEDYNR- 71 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCC-----------CBCCCC----------------------CEEECCCC-CTTTT-
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCeeeeeEEEEEEECCEE---------------EEEEEEECCCChhhhh-
Confidence 78999999999999999999975432 233333222211122222211 5688999999765433
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 72 ------~~~~~~~~~d~~i~v~d~~ 90 (182)
T 3bwd_D 72 ------LRPLSYRGADVFILAFSLI 90 (182)
T ss_dssp ------TGGGGGTTCSEEEEEEETT
T ss_pred ------hHHhhccCCCEEEEEEECC
Confidence 2234568899999999984
No 126
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=3.4e-15 Score=133.86 Aligned_cols=84 Identities=20% Similarity=0.122 Sum_probs=56.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCc-cccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKI-SAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~-~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.||+++|.+|||||||+|++++... ....+|.++.+.....+.+++.. .++.+|||+|....
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~---------------~~l~~~Dt~g~~~~-- 100 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGES---------------ATIILLDMWENKGE-- 100 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEE---------------EEEEEECCTTTTHH--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCee---------------eEEEEeecCCCcch--
Confidence 6899999999999999999997532 24455555555445566777643 57889999985321
Q ss_pred cccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
... ......+.+|++++|+|+.
T Consensus 101 -~~~---l~~~~~~~a~~~ilVydvt 122 (211)
T 2g3y_A 101 -NEW---LHDHCMQVGDAYLIVYSIT 122 (211)
T ss_dssp -HHH---HHHCCCCCCSEEEEEEETT
T ss_pred -hhh---HHHHHHhhCCEEEEEEECC
Confidence 011 1123457899999999984
No 127
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.60 E-value=6.6e-15 Score=127.91 Aligned_cols=77 Identities=29% Similarity=0.319 Sum_probs=55.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc-ccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS-AENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~-~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.+|+++|++|||||||+++|++.... ..+ |.......+.+++ ..+.+|||||....
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~----t~g~~~~~~~~~~-----------------~~l~i~Dt~G~~~~-- 73 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDISHITP----TQGFNIKSVQSQG-----------------FKLNVWDIGGQRKI-- 73 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCCEEEEE----ETTEEEEEEEETT-----------------EEEEEEECSSCGGG--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcccC----cCCeEEEEEEECC-----------------EEEEEEECCCCHHH--
Confidence 68999999999999999999985321 111 2222233455554 78999999996432
Q ss_pred cccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.......++.+|++++|+|++
T Consensus 74 -----~~~~~~~~~~~~~~i~v~d~~ 94 (181)
T 1fzq_A 74 -----RPYWRSYFENTDILIYVIDSA 94 (181)
T ss_dssp -----HHHHHHHHTTCSEEEEEEETT
T ss_pred -----HHHHHHHhCCCCEEEEEEECc
Confidence 223445678999999999985
No 128
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.60 E-value=1.9e-14 Score=132.35 Aligned_cols=88 Identities=17% Similarity=0.126 Sum_probs=68.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCc-eeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISAENYPF-CTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~-~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
.+|+|+|++|||||||+|+|++.. ...+..|. +|.....+.+.+.+ ..+.+|||||+.+..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN-----------------REIVIIDTPDMFSWK 85 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT-----------------EEEEEEECCGGGGSS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC-----------------CEEEEEECcCCCCCC
Confidence 689999999999999999999986 34444455 78888888888877 679999999998765
Q ss_pred Ccccch----hhHHHhhccccCEEEEEEecc
Q psy2401 81 SKGEGL----GNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 81 ~~~~~l----~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....+ .+.+...++.+|++++|+|+.
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~ 116 (260)
T 2xtp_A 86 DHCEALYKEVQRCYLLSAPGPHVLLLVTQLG 116 (260)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCSEEEEEEETT
T ss_pred CCHHHHHHHHHHHHHhcCCCCcEEEEEEeCC
Confidence 433221 233345678999999999984
No 129
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.60 E-value=7.3e-15 Score=127.93 Aligned_cols=79 Identities=19% Similarity=0.305 Sum_probs=58.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+|++++.... ...| |.......+.+++ ..+.+|||||.......
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~-----------------~~~~~~Dt~G~~~~~~~ 82 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLGDVV-TTVP--TVGVNLETLQYKN-----------------ISFEVWDLGGQTGVRPY 82 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSCCE-EECS--STTCCEEEEEETT-----------------EEEEEEEECCSSSSCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CcCC--CCceEEEEEEECC-----------------EEEEEEECCCCHhHHHH
Confidence 68999999999999999999875432 2233 4445555666655 78999999998654432
Q ss_pred ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
. ...++.+|++++|+|+++
T Consensus 83 ~-------~~~~~~~d~ii~v~d~~~ 101 (189)
T 2x77_A 83 W-------RCYFSDTDAVIYVVDSTD 101 (189)
T ss_dssp C-------SSSSTTCCEEEEEEETTC
T ss_pred H-------HHHhhcCCEEEEEEeCCC
Confidence 2 245588999999999953
No 130
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.60 E-value=1.2e-14 Score=129.86 Aligned_cols=82 Identities=18% Similarity=0.173 Sum_probs=55.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.+|||||||+++|++..... .+..++.......+.+++.. ..+.+|||||......
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~- 90 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDCYPE-TYVPTVFENYTACLETEEQR---------------VELSLWDTSGSPYYDN- 90 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCS-SCCCCSEEEEEEEEEC--CE---------------EEEEEEEECCSGGGTT-
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCC-CcCCeeeeeEEEEEEECCEE---------------EEEEEEECCCCHhHHH-
Confidence 799999999999999999999865432 22222222223334444432 6799999999754433
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 91 ------~~~~~~~~~d~~i~v~d~~ 109 (214)
T 3q3j_B 91 ------VRPLCYSDSDAVLLCFDIS 109 (214)
T ss_dssp ------TGGGGCTTCSEEEEEEETT
T ss_pred ------HHHHHcCCCeEEEEEEECc
Confidence 2224568899999999985
No 131
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.59 E-value=2.9e-15 Score=133.57 Aligned_cols=84 Identities=17% Similarity=0.014 Sum_probs=52.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.+|||||||+|+|++........+..+...........+.. ...+.+|||||.......
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~--------------~~~~~l~Dt~G~~~~~~~ 77 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGN--------------VIKFNVWDTAGQEKKAVL 77 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSC--------------EEEEEEEEECSGGGTSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCc--------------EEEEEEEecCCchhhchH
Confidence 699999999999999999999764332111111111111111211110 156899999997654432
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. ...++.+|++++|+|+.
T Consensus 78 ~-------~~~~~~~d~~i~v~d~~ 95 (218)
T 4djt_A 78 K-------DVYYIGASGAILFFDVT 95 (218)
T ss_dssp C-------HHHHTTCSEEEEEEETT
T ss_pred H-------HHHhhcCCEEEEEEeCC
Confidence 1 23457899999999985
No 132
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=1.3e-14 Score=128.59 Aligned_cols=82 Identities=21% Similarity=0.188 Sum_probs=55.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|.+|||||||+|+|++...... +..++.......+.+++.. ..+.+|||||......
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 88 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFPEV-YVPTVFENYVADIEVDGKQ---------------VELALWDTAGQEDYDR- 88 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEE---------------EEEEEEECTTCTTCTT-
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCCCc-CCCcccceEEEEEEECCEE---------------EEEEEEECCCcHHHHH-
Confidence 5899999999999999999998654322 2222322223335555532 5789999999765433
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 89 ------~~~~~~~~~d~~i~v~d~~ 107 (207)
T 2fv8_A 89 ------LRPLSYPDTDVILMCFSVD 107 (207)
T ss_dssp ------TGGGGCTTCCEEEEEEETT
T ss_pred ------HHHhhcCCCCEEEEEEECC
Confidence 2234568899999999984
No 133
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.59 E-value=1.5e-14 Score=127.68 Aligned_cols=82 Identities=21% Similarity=0.167 Sum_probs=57.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.+|||||||++++++........|.++.. ....+.+++.. ..+.+|||||......
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~- 88 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YIADIEVDGKQ---------------VELALWDTAGQEDYDR- 88 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCC-CEEEEEETTEE---------------EEEEEECCCCSGGGTT-
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccce-EEEEEEECCEE---------------EEEEEEECCCchhHHH-
Confidence 689999999999999999999865543333333322 22445565532 5789999999754332
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|+.
T Consensus 89 ------~~~~~~~~~d~~i~v~d~~ 107 (201)
T 2gco_A 89 ------LRPLSYPDTDVILMCFSID 107 (201)
T ss_dssp ------TGGGGCTTCSEEEEEEETT
T ss_pred ------HHHHhcCCCCEEEEEEECC
Confidence 2224568899999999984
No 134
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.59 E-value=7.7e-15 Score=131.02 Aligned_cols=82 Identities=17% Similarity=0.194 Sum_probs=47.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|.+|||||||+++|++.... ..++.++.......+.+++.. ..+.+|||||......
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~~~~~- 97 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKGKP---------------VHLHIWDTAGQDDYDR- 97 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTEE---------------EEEEEEEC---------
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEECCEE---------------EEEEEEECCCchhhhH-
Confidence 68999999999999999999986432 233333333334445555532 5799999999754432
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 98 ------~~~~~~~~~d~~i~v~d~~ 116 (214)
T 2j1l_A 98 ------LRPLFYPDASVLLLCFDVT 116 (214)
T ss_dssp -------------CEEEEEEEEETT
T ss_pred ------HHHHHhccCCEEEEEEECc
Confidence 2223468899999999985
No 135
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.59 E-value=8.8e-15 Score=127.09 Aligned_cols=82 Identities=17% Similarity=0.182 Sum_probs=55.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
.+|+++|++|||||||+|+|++........| +........+.+++.. ..+.+|||||...+..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 70 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCFPENYVP-TVFENYTASFEIDTQR---------------IELSLWDTSGSPYYDN- 70 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCC-CSEEEEEEEEECSSCE---------------EEEEEEEECCSGGGTT-
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-ccceeEEEEEEECCEE---------------EEEEEEECCCChhhhh-
Confidence 6899999999999999999998644322222 2212222334444432 6789999999754432
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 71 ------~~~~~~~~~~~~i~v~d~~ 89 (184)
T 1m7b_A 71 ------VRPLSYPDSDAVLICFDIS 89 (184)
T ss_dssp ------TGGGGCTTCSEEEEEEETT
T ss_pred ------hHHhhcCCCcEEEEEEECC
Confidence 1224568899999999985
No 136
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.59 E-value=8e-15 Score=128.85 Aligned_cols=162 Identities=17% Similarity=0.099 Sum_probs=95.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
+||+++|.+|||||||+|++++.. ...+.++.++.+.....+.+++.. ..+.+|||+|....
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~~~Dt~~~~~~-- 69 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGES---------------ATIILLDMWENKGE-- 69 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEE---------------EEEEEECCCCC-----
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeE---------------EEEEEEEeccCcch--
Confidence 689999999999999999999742 234455555555555667777743 56789999986431
Q ss_pred cccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCchhHHH
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIEL 161 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~~~~~~ 161 (363)
...+.. ...+.+|++++|+|+.+.
T Consensus 70 -~~~~~~---~~~~~~~~~i~v~dv~~~---------------------------------------------------- 93 (192)
T 2cjw_A 70 -NEWLHD---HCMQVGDAYLIVYSITDR---------------------------------------------------- 93 (192)
T ss_dssp --CTTGG---GHHHHCSEEEEEEETTCH----------------------------------------------------
T ss_pred -hhhHHH---hhcccCCEEEEEEECCCH----------------------------------------------------
Confidence 111222 234779999999998421
Q ss_pred HHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHH
Q psy2401 162 LKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLE 241 (363)
Q Consensus 162 ~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e 241 (363)
..++.+..|+. .+..+......|+++|+||.|.........+..+.+....+.+++.+||+..
T Consensus 94 -~s~~~~~~~~~----------------~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g 156 (192)
T 2cjw_A 94 -ASFEKASELRI----------------QLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQ 156 (192)
T ss_dssp -HHHHHHHHHHH----------------HHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTT
T ss_pred -HHHHHHHHHHH----------------HHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccC
Confidence 01111111111 0111111146799999999996311111223344444556778999999987
Q ss_pred HHHhcCCHHHHHH
Q psy2401 242 EEISDLNNIDKKF 254 (363)
Q Consensus 242 ~~i~el~~~~~~~ 254 (363)
.++.++.+...+.
T Consensus 157 ~~v~~lf~~l~~~ 169 (192)
T 2cjw_A 157 HNVKELFEGIVRQ 169 (192)
T ss_dssp BSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 7776665444433
No 137
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.59 E-value=1.5e-15 Score=151.45 Aligned_cols=88 Identities=23% Similarity=0.303 Sum_probs=59.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.+|+|+|+||||||||+|+|++.. +.++++|++|.+...+.+.+.+ ..+.+|||||+.....
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~-----------------~~~~liDT~G~~~~~~ 86 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN-----------------YDFNLIDTGGIDIGDE 86 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS-----------------SCCEEECCCC------
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC-----------------ceEEEEECCCCCCcch
Confidence 589999999999999999999984 4588999999999888888877 6789999999874322
Q ss_pred c-ccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 K-GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~-~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. .+.+.......++.+|++|+|+|+.
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~ 113 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGR 113 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESS
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCC
Confidence 1 2233445667789999999999984
No 138
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.58 E-value=1.5e-14 Score=145.59 Aligned_cols=79 Identities=20% Similarity=0.299 Sum_probs=62.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|.+|||||||+|+|++.. .+..+| |+..+.+.+.+.+ ..+.+|||||......
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~-~~~~~~--T~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~~~- 381 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIP--TVGFNVETVTYKN-----------------VKFNVWDVGGQDKIRP- 381 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS-CCCCCC--CSSEEEEEEESSS-----------------CEEEEEEECCCGGGSG-
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCC-CCCcCC--ccceeEEEEEeCC-----------------EEEEEEECCCcHHHHH-
Confidence 689999999999999999999875 233344 7777778888766 7899999999654433
Q ss_pred ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.....++.+|++|+|+|+++
T Consensus 382 ------~~~~~~~~ad~~i~V~D~~~ 401 (497)
T 3lvq_E 382 ------LWRHYYTGTQGLIFVVDCAD 401 (497)
T ss_dssp ------GGGGGGTTCCEEEEEEETTC
T ss_pred ------HHHHHhccCCEEEEEEECcc
Confidence 34466789999999999953
No 139
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.58 E-value=2e-14 Score=150.29 Aligned_cols=233 Identities=15% Similarity=0.073 Sum_probs=149.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCc---c---c------cC------CCceeecceeEEEEeCCcccccccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKI---S---A------EN------YPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIF 64 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~---~---~------~~------~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~ 64 (363)
++|+|+|++|+|||||+++|+.... . + .+ ..+.|+......+.+.+.. ....
T Consensus 11 ~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~----------~~~~ 80 (704)
T 2rdo_7 11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMA----------KQYE 80 (704)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCcc----------ccCC
Confidence 6899999999999999999964311 0 1 11 1334544444445544310 0011
Q ss_pred ceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHh-h
Q psy2401 65 PAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEK-Y 143 (363)
Q Consensus 65 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~-~ 143 (363)
...+++|||||..++.. .....++.+|++|+|+|+.++. ..+++..|..+..... .
T Consensus 81 ~~~i~liDTPG~~df~~-------~~~~~l~~aD~aIlVvDa~~gv----------------~~qt~~~~~~~~~~~ip~ 137 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFTI-------EVERSMRVLDGAVMVYCAVGGV----------------QPQSETVWRQANKYKVPR 137 (704)
T ss_pred ceeEEEEeCCCccchHH-------HHHHHHHHCCEEEEEEeCCCCC----------------cHHHHHHHHHHHHcCCCE
Confidence 15799999999876543 5567778999999999996532 1122333433333333 3
Q ss_pred hhhhhcccccCCchhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhh-cccccccEEEec----cccccCCCchHH
Q psy2401 144 IDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFL-NLLTIKPIIFVA----NVKENGFKNNLL 218 (363)
Q Consensus 144 ~~~i~k~~~~g~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~-~~l~~kp~i~v~----Nk~d~~~~~~~~ 218 (363)
+..+||+++.+ .+...+++++++.|.....+..+|+..++ .+.++ +++..+...|-- ++.+....+...
T Consensus 138 ilviNKiD~~~----~~~~~~~~~l~~~l~~~~~~~~~Pi~~~~--~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~ 211 (704)
T 2rdo_7 138 IAFVNKMDRMG----ANFLKVVNQIKTRLGANPVPLQLAIGAEE--HFTGVVDLVKMKAINWNDADQGVTFEYEDIPADM 211 (704)
T ss_pred EEEEeCCCccc----ccHHHHHHHHHHHhCCCceeEEccccccc--cccceeehhhhhhhcccCccCCcceEEecCCHHH
Confidence 56788885432 24567788888888776555666776443 34444 555555444421 111110123444
Q ss_pred HHHHHHHHhcCCCcEEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeC
Q psy2401 219 LDQLKIYAHNQNIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTV 285 (363)
Q Consensus 219 ~~~i~~~~~~~~~~~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~ 285 (363)
.+.+.++ ..++-+.+++.+++.+++||++..++.+.+...+++.+....++|+|-.
T Consensus 212 ~~~~~~~-----------~~~l~e~~ae~dd~l~e~~l~~~~l~~~~l~~~l~~~~~~~~~~Pv~~g 267 (704)
T 2rdo_7 212 VELANEW-----------HQNLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCG 267 (704)
T ss_pred HHHHHHH-----------HHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeEEEEe
Confidence 4555444 4567788999999999999999999999999999999998999999865
No 140
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.57 E-value=1.6e-14 Score=128.38 Aligned_cols=82 Identities=17% Similarity=0.182 Sum_probs=56.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
+||+++|.+|||||||+|+|++........| ++.......+.+++.. ..+.+|||||...+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~~ 92 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDCFPENYVP-TVFENYTASFEIDTQR---------------IELSLWDTSGSPYYDNV 92 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCC-CSEEEEEEEEESSSSE---------------EEEEEEEECCSGGGTTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCC-ccceeEEEEEEECCEE---------------EEEEEEeCCCcHhhhHH
Confidence 6899999999999999999998654322222 2211222334444432 67999999997544321
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
....++.+|++++|+|++
T Consensus 93 -------~~~~~~~~d~~ilv~D~~ 110 (205)
T 1gwn_A 93 -------RPLSYPDSDAVLICFDIS 110 (205)
T ss_dssp -------GGGGCTTCSEEEEEEETT
T ss_pred -------HHhhccCCCEEEEEEECC
Confidence 224568899999999985
No 141
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.56 E-value=1.4e-15 Score=136.13 Aligned_cols=81 Identities=16% Similarity=0.041 Sum_probs=56.9
Q ss_pred cEEEEEeCCCCcHHHHHHH-HHcC-CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNA-LTKL-KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~-Lt~~-~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
+||+++|.+|||||||+|+ +.+. .....+.++++...... .+.+.. ..+.+|||||.....
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~---------------~~~~i~Dt~G~~~~~ 78 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVF--HTNRGP---------------IKFNVWDTAGQEKFG 78 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEE--EETTEE---------------EEEEEEEECSGGGTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEE--EECCEE---------------EEEEEEeCCChHHHh
Confidence 6899999999999999999 4443 33345666666554433 333322 679999999975543
Q ss_pred CcccchhhHHHhhccccCEEEEEEecc
Q psy2401 81 SKGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 81 ~~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.. ....++.+|++++|+|+.
T Consensus 79 ~~-------~~~~~~~~~~~i~v~d~~ 98 (221)
T 3gj0_A 79 GL-------RDGYYIQAQCAIIMFDVT 98 (221)
T ss_dssp CC-------CHHHHTTCCEEEEEEETT
T ss_pred HH-------HHHHHhcCCEEEEEEECC
Confidence 32 224457899999999985
No 142
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.56 E-value=2.3e-14 Score=126.18 Aligned_cols=83 Identities=24% Similarity=0.204 Sum_probs=61.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+++|++........|..+.++..+.+.+++.. ..+.+||+||......
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~---------------~~~~i~Dt~g~~~~~~- 69 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT---------------IKAQIWDTAGQERYRR- 69 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEE---------------EEEEEEECSSGGGTTC-
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCchhhhh-
Confidence 689999999999999999999976554455655566778888888853 5688999999765432
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+... ..+.+|++++|+|+.
T Consensus 70 ---~~~~---~~~~~~~~i~v~d~~ 88 (199)
T 2f9l_A 70 ---ITSA---YYRGAVGALLVYDIA 88 (199)
T ss_dssp ---CCHH---HHTTCSEEEEEEETT
T ss_pred ---hhHH---HHhcCCEEEEEEECc
Confidence 2223 336789999999984
No 143
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.56 E-value=4.8e-14 Score=122.20 Aligned_cols=83 Identities=24% Similarity=0.191 Sum_probs=56.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|.+|||||||+|++++.....+..|++|..+... .+. .+.+|||||+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~--~~~-------------------~~~l~Dt~G~~~~~~~ 60 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEI--EWK-------------------NHKIIDMPGFGFMMGL 60 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEE--EET-------------------TEEEEECCCBSCCTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEE--ecC-------------------CEEEEECCCccccccC
Confidence 6899999999999999999999887778888777665432 222 4789999997543211
Q ss_pred c----c---chhhHHHhh-ccccCEEEEEEec
Q psy2401 83 G----E---GLGNKFLAH-IRETNIVIHVIRC 106 (363)
Q Consensus 83 ~----~---~l~~~~l~~-~~~aD~il~Vvda 106 (363)
. + .+...++.. ...+++++.|+|.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~ 92 (190)
T 2cxx_A 61 PKEVQERIKDEIVHFIEDNAKNIDVAVLVVDG 92 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGCCEEEEEEET
T ss_pred CHHHHHHHHHHHHHHHHhhhccCCEEEEEEcc
Confidence 1 1 111223333 5556777777776
No 144
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.55 E-value=4.5e-15 Score=149.08 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=60.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCc-------------------------------cccCCCceeecceeEEEEeCCccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKI-------------------------------SAENYPFCTIEPNIGIIEVPDKRL 51 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~-------------------------------~~~~~p~~t~~~~~g~v~~~~~~~ 51 (363)
++|+++|++|+|||||+|+|++... .....+++|++.....+...+
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--- 110 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR--- 110 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS---
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC---
Confidence 6899999999999999999975411 112234666666666665554
Q ss_pred cccccccccccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 52 KHLNNIVKTKKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 52 ~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
..+.+|||||+.+ +.......++.+|++|+|+|+.+
T Consensus 111 --------------~~~~iiDTPG~~~-------f~~~~~~~~~~aD~~llVvDa~~ 146 (483)
T 3p26_A 111 --------------ANFTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCST 146 (483)
T ss_dssp --------------CEEEEECCCCCGG-------GHHHHHHHHTTCSEEEEEEECCC
T ss_pred --------------ceEEEEECCCcHH-------HHHHHHHhhhhCCEEEEEEECCC
Confidence 6799999999854 34467778899999999999964
No 145
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.55 E-value=5.2e-14 Score=123.46 Aligned_cols=83 Identities=27% Similarity=0.243 Sum_probs=63.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|++|||||||+++|++........|..+.++..+.+.+++.. ..+.+||+||......
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~---------------~~~~i~Dt~g~~~~~~- 93 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT---------------IKAQIWDTAGLERYRA- 93 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECSCCSSSC-
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEE---------------EEEEEEECCCCcchhh-
Confidence 589999999999999999999976555556666667778889988843 4677899999765432
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+.. ...+.++++++|+|..
T Consensus 94 ---~~~---~~~~~~~~~i~v~d~~ 112 (191)
T 1oix_A 94 ---ITS---AYYRGAVGALLVYDIA 112 (191)
T ss_dssp ---CCH---HHHTTCCEEEEEEETT
T ss_pred ---hhH---HHhhcCCEEEEEEECc
Confidence 222 3347789999999974
No 146
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.54 E-value=6.4e-14 Score=123.08 Aligned_cols=83 Identities=18% Similarity=0.170 Sum_probs=53.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEE--EeC-CccccccccccccccccceeEEEEeeecccCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGII--EVP-DKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSG 79 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v--~~~-~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
+||+++|.+|||||||++.+++.... . +..+..+....+ .+. +.. ..+++|||||...+
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~ 82 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKMSP-N--ETLFLESTNKIYKDDISNSSF---------------VNFQIWDFPGQMDF 82 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCCCG-G--GGGGCCCCCSCEEEEECCTTS---------------CCEEEEECCSSCCT
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCC-c--ceeeeccccceeeeeccCCCe---------------eEEEEEECCCCHHH
Confidence 79999999999999999999985221 1 211222222222 232 222 67999999997654
Q ss_pred CCcccchhhHHHhhccccCEEEEEEecc
Q psy2401 80 ASKGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 80 ~~~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
... .......++.+|++++|+|+.
T Consensus 83 ~~~----~~~~~~~~~~~~~~i~v~d~~ 106 (196)
T 3llu_A 83 FDP----TFDYEMIFRGTGALIYVIDAQ 106 (196)
T ss_dssp TCT----TCCHHHHHHTCSEEEEEEETT
T ss_pred Hhh----hhhcccccccCCEEEEEEECC
Confidence 331 100034558899999999985
No 147
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.54 E-value=5.5e-14 Score=147.33 Aligned_cols=233 Identities=15% Similarity=0.065 Sum_probs=160.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC------------ccccC------CCceeecceeEEEEeCCcccccccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK------------ISAEN------YPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIF 64 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~------------~~~~~------~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~ 64 (363)
++|||+||..+|||||..+|.-.. ....+ ..+.|+....-.+.|.+.+. +..
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~----------~~~ 83 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRG----------QYD 83 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTS----------CSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcC----------CCC
Confidence 579999999999999999995210 01111 13667766666677654211 001
Q ss_pred ceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHh-h
Q psy2401 65 PAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEK-Y 143 (363)
Q Consensus 65 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~-~ 143 (363)
...|+++||||..++.. +..+.+|-+|.+|+||||.++. ..++|.+|+.+..... +
T Consensus 84 ~~~iNlIDTPGHvDF~~-------Ev~~aLr~~DgavlvVDaveGV----------------~~qT~~v~~~a~~~~lp~ 140 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTI-------EVERSLRVLDGAVVVFCGTSGV----------------EPQSETVWRQANKYGVPR 140 (709)
T ss_dssp CEEEEEECCCSCTTCHH-------HHHHHHHHCSEEEEEEETTTCS----------------CHHHHHHHHHHHHHTCCE
T ss_pred CEEEEEEeCCCCcccHH-------HHHHHHHHhCeEEEEEECCCCC----------------chhHHHHHHHHHHcCCCe
Confidence 26899999999998766 7778899999999999997664 3456888888766665 5
Q ss_pred hhhhhcccccCCchhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhh-cccccccEEEecccc----ccCCCchHH
Q psy2401 144 IDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFL-NLLTIKPIIFVANVK----ENGFKNNLL 218 (363)
Q Consensus 144 ~~~i~k~~~~g~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~-~~l~~kp~i~v~Nk~----d~~~~~~~~ 218 (363)
+.++||+++.+ .+...+++++++.|.....+..+|++.++ .+.++ +++..+.+.+--+.. .....+.+.
T Consensus 141 i~~iNKiDr~~----a~~~~~~~ei~~~l~~~~~~~~~pi~~~~--~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~ 214 (709)
T 4fn5_A 141 IVYVNKMDRQG----ANFLRVVEQIKKRLGHTPVPVQLAIGAEE--NFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAEL 214 (709)
T ss_dssp EEEEECSSSTT----CCHHHHHHHHHHHHCSCEEESEEEESSST--TCCEEEETTTTEEEEEEC--CCCEEEECCCCHHH
T ss_pred EEEEccccccC----ccHHHHHHHhhhhcccceeeeecccCchh--ccceEEEEeeeeEEEeecccCCceeccccccHHH
Confidence 78999996543 35677888898888876655556666554 34444 555666665542211 100124455
Q ss_pred HHHHHHHHhcCCCcEEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeC
Q psy2401 219 LDQLKIYAHNQNIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTV 285 (363)
Q Consensus 219 ~~~i~~~~~~~~~~~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~ 285 (363)
.+..+.+ ...+.+.+++.+++.+++|+++..++...+...++.......+.|+|-.
T Consensus 215 ~~~~~~~-----------~~~~~e~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv~~g 270 (709)
T 4fn5_A 215 KDLAEEW-----------RSSMVEAAAEANEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCG 270 (709)
T ss_dssp HHHHHHH-----------HHHHHHHHHTSSHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCEEEEEC
T ss_pred HHHHHHH-----------HHHHHHHHHhccHHHHHHHHhcCCccHHHHHHHHHHhhhhceeeeeeee
Confidence 5555555 4557788899999999999999999999999999999999999999875
No 148
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.53 E-value=7e-14 Score=132.28 Aligned_cols=83 Identities=20% Similarity=0.206 Sum_probs=60.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.++|+++|.+|||||||++.+++... ...++.++.......+.+++.. ..+.+|||||......
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~ 218 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKP---------------VNLGLWDTAGLEDYDR 218 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCCGGGTT
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECCEE---------------EEEEEEeCCCchhhhH
Confidence 36899999999999999999997543 3445555555445556666533 5678999999765433
Q ss_pred cccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.....++.+|++++|+|++
T Consensus 219 -------~~~~~~~~~d~~i~v~d~~ 237 (332)
T 2wkq_A 219 -------LRPLSYPQTDVFLICFSLV 237 (332)
T ss_dssp -------TGGGGCTTCSEEEEEEETT
T ss_pred -------HHHHhccCCCEEEEEEeCC
Confidence 2234568999999999985
No 149
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.52 E-value=3.8e-14 Score=135.44 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=56.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|.+|||||||+++|++... ...+| |+......+...+ ..+.+|||||......
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~~~-~~~~p--T~~~~~~~~~~~~-----------------~~l~i~Dt~G~~~~~~- 224 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLGEI-VTTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDKIRP- 224 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSSCC-EEEEE--ETTEEEEEEEETT-----------------EEEEEEECC-----CC-
T ss_pred ceEEEECCCCccHHHHHHHHhCCCC-CCccc--ccceEEEEEecCc-----------------EEEEEEECCCCHhHHH-
Confidence 5899999999999999999998653 23333 6666666666655 7899999999654433
Q ss_pred ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.....++.+|++++|+|+.+
T Consensus 225 ------~~~~~~~~ad~vilV~D~~~ 244 (329)
T 3o47_A 225 ------LWRHYFQNTQGLIFVVDSND 244 (329)
T ss_dssp ------SHHHHHTTEEEEEEEEETTC
T ss_pred ------HHHHHhccCCEEEEEEECCc
Confidence 23345588999999999853
No 150
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.4e-14 Score=149.10 Aligned_cols=82 Identities=20% Similarity=0.194 Sum_probs=65.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccC-------------------------------CCceeecceeEEEEeCCccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAEN-------------------------------YPFCTIEPNIGIIEVPDKRL 51 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~-------------------------------~p~~t~~~~~g~v~~~~~~~ 51 (363)
++|+++|++|+|||||+|+|++....+.. .+++|++.....+...+
T Consensus 168 lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~--- 244 (611)
T 3izq_1 168 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR--- 244 (611)
T ss_dssp CEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS---
T ss_pred eEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC---
Confidence 68999999999999999999976322221 25778888777777766
Q ss_pred cccccccccccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 52 KHLNNIVKTKKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 52 ~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.++.+|||||+.+ +.......++.+|++|+|||+..
T Consensus 245 --------------~~~~iiDTPG~e~-------f~~~~~~~~~~aD~~llVVDa~~ 280 (611)
T 3izq_1 245 --------------ANFTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCST 280 (611)
T ss_dssp --------------CEEEEEECCSSSC-------HHHHHTTTSSCCSEEEEEEECSH
T ss_pred --------------ceEEEEECCCCcc-------cHHHHHHHHhhcCceEEEEECCC
Confidence 6799999999743 44567778899999999999953
No 151
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.51 E-value=3.4e-14 Score=142.56 Aligned_cols=82 Identities=21% Similarity=0.297 Sum_probs=58.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-------ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeec
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-------ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAG 75 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-------~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpG 75 (363)
++|+++|++|+|||||+++|++.. ...+..+++|++.....+.+++ ..+.+|||||
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-----------------~~i~iiDtPG 82 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN-----------------YRITLVDAPG 82 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT-----------------EEEEECCCSS
T ss_pred CEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC-----------------EEEEEEECCC
Confidence 689999999999999999999865 3345567788888777777766 6799999999
Q ss_pred ccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 76 LVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 76 l~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
..+ +.......++.+|++++|+|+.+
T Consensus 83 h~~-------~~~~~~~~~~~aD~~ilVvda~~ 108 (482)
T 1wb1_A 83 HAD-------LIRAVVSAADIIDLALIVVDAKE 108 (482)
T ss_dssp HHH-------HHHHHHHHTTSCCEEEEEEETTT
T ss_pred hHH-------HHHHHHHHHhhCCEEEEEEecCC
Confidence 743 34466778899999999999954
No 152
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.26 E-value=1.2e-15 Score=134.83 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=56.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
++|+++|.+|||||||++++++.... ..++.++.+.....+.+++.. ..+.+|||||..+...
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~- 93 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKP---------------VNLGLWDTAGQEDYDR- 93 (204)
Confidence 68999999999999999999975432 333333433333344444422 5678999999765432
Q ss_pred ccchhhHHHhhccccCEEEEEEeccc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.....++.+|++++|+|+++
T Consensus 94 ------~~~~~~~~~d~iilv~D~~~ 113 (204)
T 3th5_A 94 ------LRPLSYPQTDVFLICFSLVS 113 (204)
Confidence 22245688999999999853
No 153
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.51 E-value=4.3e-14 Score=140.24 Aligned_cols=82 Identities=21% Similarity=0.189 Sum_probs=61.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc-------------------------------ccCCCceeecceeEEEEeCCccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS-------------------------------AENYPFCTIEPNIGIIEVPDKRL 51 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~-------------------------------~~~~p~~t~~~~~g~v~~~~~~~ 51 (363)
++|+++|++|+|||||+++|++.... ....++.|++.....+..++
T Consensus 18 ~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~--- 94 (439)
T 3j2k_7 18 VNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK--- 94 (439)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC---
Confidence 68999999999999999999543110 11125667777666666666
Q ss_pred cccccccccccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 52 KHLNNIVKTKKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 52 ~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.++.+|||||+.++ .......++.+|++++|||+.+
T Consensus 95 --------------~~~~iiDTPGh~~f-------~~~~~~~~~~aD~~ilVVDa~~ 130 (439)
T 3j2k_7 95 --------------KHFTILDAPGHKSF-------VPNMIGGASQADLAVLVISARK 130 (439)
T ss_pred --------------eEEEEEECCChHHH-------HHHHHhhHhhCCEEEEEEECCC
Confidence 67999999997543 3466677889999999999964
No 154
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.49 E-value=1.2e-13 Score=120.18 Aligned_cols=88 Identities=18% Similarity=0.165 Sum_probs=48.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
.+||+++|++|||||||++++++.. ...+.+.. |.........+.-. ........+.+|||||.....
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~-t~g~~~~~~~~~~~----------~~~~~~~~~~i~Dt~G~~~~~ 70 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSA-TVGIDVKDWPIQIR----------DKRKRDLVLNVWDFAGREEFY 70 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC-------------------CEEEEEEECSHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcce-eccEEeEEeeeccc----------cCCCCceEEEEEecCCCHHHH
Confidence 4799999999999999999999852 22222211 22222111111100 000011678999999975432
Q ss_pred CcccchhhHHHhhccccCEEEEEEecc
Q psy2401 81 SKGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 81 ~~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
. +.. ..++.+|++++|+|++
T Consensus 71 ~----~~~---~~~~~~~~~i~v~d~~ 90 (184)
T 2zej_A 71 S----THP---HFMTQRALYLAVYDLS 90 (184)
T ss_dssp T----TSH---HHHHHSEEEEEEEEGG
T ss_pred H----hhH---HHccCCcEEEEEEeCC
Confidence 2 112 3346789999999985
No 155
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.49 E-value=8.8e-14 Score=140.86 Aligned_cols=82 Identities=18% Similarity=0.228 Sum_probs=64.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC----------------cccc------CCCceeecceeEEEEeCCcccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK----------------ISAE------NYPFCTIEPNIGIIEVPDKRLKHLNNIVKT 60 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~----------------~~~~------~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~ 60 (363)
.+|+|+|++|||||||+|+|+... .... ..+++|+......+.+.+
T Consensus 14 r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~------------ 81 (528)
T 3tr5_A 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD------------ 81 (528)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT------------
T ss_pred CEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC------------
Confidence 589999999999999999996211 0111 125677788878888877
Q ss_pred ccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 61 KKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 61 ~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
..+++|||||+.++.. .....++.+|++|+|+|+.+
T Consensus 82 -----~~i~liDTPG~~df~~-------~~~~~l~~aD~allVvDa~~ 117 (528)
T 3tr5_A 82 -----YLINLLDTPGHADFTE-------DTYRTLTAVDSALMVIDAAK 117 (528)
T ss_dssp -----EEEEEECCCCSTTCCH-------HHHHGGGGCSEEEEEEETTT
T ss_pred -----EEEEEEECCCchhHHH-------HHHHHHHhCCEEEEEEeCCC
Confidence 7899999999876543 67788899999999999964
No 156
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.48 E-value=8.3e-14 Score=141.69 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=118.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC----------------ccccCC------CceeecceeEEEEeCCcccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK----------------ISAENY------PFCTIEPNIGIIEVPDKRLKHLNNIVKT 60 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~----------------~~~~~~------p~~t~~~~~g~v~~~~~~~~~l~~~~~~ 60 (363)
++|||+|+.++|||||..+|+-.. ..+.++ .+.|+......+.|++
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~------------ 99 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD------------ 99 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT------------
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC------------
Confidence 579999999999999999995110 112232 4788888888899988
Q ss_pred ccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHH
Q psy2401 61 KKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAIL 140 (363)
Q Consensus 61 ~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~ 140 (363)
..|+|+||||..++.. +..+.++.+|.+|+||||.++. ..+++.+|+.+...
T Consensus 100 -----~~iNlIDTPGHvDF~~-------Ev~raL~~~DgAvlVvda~~GV----------------~~qT~~v~~~a~~~ 151 (548)
T 3vqt_A 100 -----RVVNLLDTPGHQDFSE-------DTYRVLTAVDSALVVIDAAKGV----------------EAQTRKLMDVCRMR 151 (548)
T ss_dssp -----EEEEEECCCCGGGCSH-------HHHHHHHSCSEEEEEEETTTBS----------------CHHHHHHHHHHHHT
T ss_pred -----EEEEEEeCCCcHHHHH-------HHHHHHHhcCceEEEeecCCCc----------------ccccHHHHHHHHHh
Confidence 7899999999999876 7778889999999999997765 34568888887777
Q ss_pred Hh-hhhhhhcccccCCchhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhh-cccccccEEEe
Q psy2401 141 EK-YIDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFL-NLLTIKPIIFV 205 (363)
Q Consensus 141 ~~-~~~~i~k~~~~g~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~-~~l~~kp~i~v 205 (363)
.. ++.++||+++.+ .+...+++++++.|.....+..+|++.++ .+.++ ++++.+.++|-
T Consensus 152 ~lp~i~fINK~Dr~~----ad~~~~~~~i~~~l~~~~~p~~~Pig~~~--~f~g~vdl~~~~~~~~~ 212 (548)
T 3vqt_A 152 ATPVMTFVNKMDREA----LHPLDVMADIEQHLQIECAPMTWPIGMGS--SFKGTYDLLHKQLHLFS 212 (548)
T ss_dssp TCCEEEEEECTTSCC----CCHHHHHHHHHHHHTSEEEESEEEESCGG--GCCEEEETTTTEEEECC
T ss_pred CCceEEEEecccchh----cchhHhhhhhhhhcCCceEeEEeeeecCC--cccceEeeeeeeeeecc
Confidence 66 578999996544 35778899999999877666677777665 45555 66777766664
No 157
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.48 E-value=2.3e-13 Score=133.82 Aligned_cols=99 Identities=23% Similarity=0.187 Sum_probs=62.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC---ccccCCCceeecceeEEEEeCCcc-c--ccccccccc-ccc--cceeEEEEee
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK---ISAENYPFCTIEPNIGIIEVPDKR-L--KHLNNIVKT-KKI--FPAIIKLVDI 73 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~---~~~~~~p~~t~~~~~g~v~~~~~~-~--~~l~~~~~~-~~~--~~~~i~lvDt 73 (363)
++|+++|++++|||||+++|++.. ......++.|++.......+.... . ......+.. .+. ....+.+|||
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDt 90 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA 90 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEEC
Confidence 689999999999999999999752 223334667777665554442100 0 000000000 000 0157999999
Q ss_pred ecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 74 AGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 74 pGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
||..+ +...+...+..+|++++|+|+.+
T Consensus 91 PGh~~-------f~~~~~~~~~~~D~~ilVvda~~ 118 (410)
T 1kk1_A 91 PGHEA-------LMTTMLAGASLMDGAILVIAANE 118 (410)
T ss_dssp SSHHH-------HHHHHHHCGGGCSEEEEEEETTS
T ss_pred CChHH-------HHHHHHhhhhhCCEEEEEEECCC
Confidence 99743 33466777788999999999954
No 158
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.47 E-value=3.3e-13 Score=119.77 Aligned_cols=83 Identities=20% Similarity=0.213 Sum_probs=57.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.++|+++|++|||||||+++|++.. ....++.++ .....+.+++.. ...+.+|||||......
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~-~~~~~~~~~--~~~~~~~~~~~~--------------~~~~~i~Dt~G~~~~~~ 69 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSIT--DSSAIYKVNNNR--------------GNSLTLIDLPGHESLRF 69 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC-CCCBCCCCS--CEEEEEECSSTT--------------CCEEEEEECCCCHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-cccccCCcc--eeeEEEEecCCC--------------ccEEEEEECCCChhHHH
Confidence 3799999999999999999999864 234455333 444456666421 06799999999753211
Q ss_pred cccchhhHHHhhccccCEEEEEEecc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
......++.+|++++|+|+.
T Consensus 70 ------~~~~~~~~~~~~~i~v~d~~ 89 (214)
T 2fh5_B 70 ------QLLDRFKSSARAVVFVVDSA 89 (214)
T ss_dssp ------HHHHHHGGGEEEEEEEEETT
T ss_pred ------HHHHHHHhhCCEEEEEEECC
Confidence 01223468899999999984
No 159
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.47 E-value=4.1e-13 Score=131.93 Aligned_cols=98 Identities=21% Similarity=0.160 Sum_probs=58.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC---ccccCCCceeecceeEEEEeCCc---cccccccccccc-cc---cceeEEEEe
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK---ISAENYPFCTIEPNIGIIEVPDK---RLKHLNNIVKTK-KI---FPAIIKLVD 72 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~---~~~~~~p~~t~~~~~g~v~~~~~---~~~~l~~~~~~~-~~---~~~~i~lvD 72 (363)
++|+++|++++|||||+++|++.. ......++.|++.......+... ........+ +. .. ....+.+||
T Consensus 9 ~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~-~~~g~~~~~~~~i~iiD 87 (408)
T 1s0u_A 9 VNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRC-PNCLAETEFLRRVSFVD 87 (408)
T ss_dssp EEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBC-TTSCCBCEEEEEEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccc-cccCcccccccEEEEEE
Confidence 689999999999999999999752 22233456677665444333110 000000000 00 00 115799999
Q ss_pred eecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 73 IAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 73 tpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
|||..+ +...+...+..+|++++|+|+.+
T Consensus 88 tPGh~~-------f~~~~~~~~~~~D~~ilVvda~~ 116 (408)
T 1s0u_A 88 SPGHET-------LMATMLSGASLMDGAILVIAANE 116 (408)
T ss_dssp CSSHHH-------HHHHHHTTCSCCSEEEEEEETTS
T ss_pred CCCHHH-------HHHHHHHhHhhCCEEEEEEECCC
Confidence 999643 33456677788999999999953
No 160
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.46 E-value=5.1e-15 Score=149.70 Aligned_cols=84 Identities=21% Similarity=0.228 Sum_probs=66.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
+.+|+++|++|+|||||+++|++........|++|.+.....+.+++. ..+++|||||...+..
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g----------------~~i~~iDTPGhe~f~~ 67 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG----------------EKITFLDTPGHAAFSA 67 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS----------------SCCBCEECSSSCCTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC----------------CEEEEEECCChHHHHH
Confidence 578999999999999999999987666667888898887777766432 4688999999766544
Q ss_pred cccchhhHHHhhccccCEEEEEEeccc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
. ....++.+|++++|+|+.+
T Consensus 68 ~-------~~~~~~~aD~vILVVDa~d 87 (537)
T 3izy_P 68 M-------RARGTQVTDIVILVVAADD 87 (537)
T ss_dssp S-------BBSSSBSBSSCEEECBSSS
T ss_pred H-------HHHHHccCCEEEEEEECCC
Confidence 2 2245688999999999954
No 161
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.46 E-value=2.1e-13 Score=135.05 Aligned_cols=82 Identities=16% Similarity=0.094 Sum_probs=53.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc-----------ccCCCce----------------------eecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS-----------AENYPFC----------------------TIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~-----------~~~~p~~----------------------t~~~~~g~v~~~~~ 49 (363)
++|+++|++|+|||||+++|++.... .+.++++ |++.....+..++
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~- 103 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK- 103 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS-
T ss_pred eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC-
Confidence 68999999999999999999864211 1112222 2222222222222
Q ss_pred cccccccccccccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 50 RLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 50 ~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
..+.+|||||..++ .......++.+|++++|+|+.+
T Consensus 104 ----------------~~~~iiDtpGh~~f-------~~~~~~~~~~aD~~ilVvDa~~ 139 (434)
T 1zun_B 104 ----------------RKFIIADTPGHEQY-------TRNMATGASTCDLAIILVDARY 139 (434)
T ss_dssp ----------------EEEEEEECCCSGGG-------HHHHHHHHTTCSEEEEEEETTT
T ss_pred ----------------ceEEEEECCChHHH-------HHHHHHHHhhCCEEEEEEECCC
Confidence 57899999996543 3355667799999999999954
No 162
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.45 E-value=4.4e-14 Score=143.51 Aligned_cols=153 Identities=17% Similarity=0.210 Sum_probs=85.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCC------ceeecceeEEEEeCCccccccccccccccccceeEEEEeeecc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYP------FCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGL 76 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p------~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl 76 (363)
+||+++|.+|||||||+|+|++........| +++..|+.+.+.+.+ ......+.+|||||.
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~-------------~~~~~~~~i~Dt~G~ 108 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDD-------------ELKECLFHFWDFGGQ 108 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCS-------------TTTTCEEEEECCCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecC-------------CCceEEEEEEECCcH
Confidence 6899999999999999999998754322212 111111111111111 011267999999995
Q ss_pred cCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHhhhhhhhcccccCCc
Q psy2401 77 VSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNE 156 (363)
Q Consensus 77 ~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~~~~~i~k~~~~g~~ 156 (363)
..... +...+ ++.+|++++|+|++... +.
T Consensus 109 e~~~~----~~~~~---l~~~d~ii~V~D~s~~~-------------~~------------------------------- 137 (535)
T 3dpu_A 109 EIMHA----SHQFF---MTRSSVYMLLLDSRTDS-------------NK------------------------------- 137 (535)
T ss_dssp CTTTT----TCHHH---HHSSEEEEEEECGGGGG-------------GH-------------------------------
T ss_pred HHHHH----HHHHH---ccCCcEEEEEEeCCCch-------------hH-------------------------------
Confidence 44333 22334 46799999999985310 00
Q ss_pred hhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEe
Q psy2401 157 HSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIII 236 (363)
Q Consensus 157 ~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~ 236 (363)
...+. .+..+. ..+|+++|+||+|.........+.+++.+...+.+++++
T Consensus 138 -----~~~~~-----------------------~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~v 187 (535)
T 3dpu_A 138 -----HYWLR-----------------------HIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRI 187 (535)
T ss_dssp -----HHHHH-----------------------HHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEEC
T ss_pred -----HHHHH-----------------------HHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEE
Confidence 00011 111121 357999999999974212223566777777778889999
Q ss_pred eHHHHHHHhcCCH
Q psy2401 237 CAKLEEEISDLNN 249 (363)
Q Consensus 237 sa~~e~~i~el~~ 249 (363)
||+...++.++..
T Consensus 188 SA~~g~gi~eL~~ 200 (535)
T 3dpu_A 188 SCKNGDGVESIAK 200 (535)
T ss_dssp CC-----CTTHHH
T ss_pred ecCcccCHHHHHH
Confidence 9998777666543
No 163
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.45 E-value=2.9e-13 Score=132.84 Aligned_cols=94 Identities=20% Similarity=0.207 Sum_probs=55.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCc-cccCCCceeecceeEEEEeCCcccccc-----ccccccc--cccceeEEEEeee
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKI-SAENYPFCTIEPNIGIIEVPDKRLKHL-----NNIVKTK--KIFPAIIKLVDIA 74 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~-~~~~~p~~t~~~~~g~v~~~~~~~~~l-----~~~~~~~--~~~~~~i~lvDtp 74 (363)
++|+++|++|+|||||+|+|++... ....++.++.... ......... ...+... ......+.+||||
T Consensus 9 ~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 9 VNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVC-----ESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEEC-----TTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccccCccccceeec-----cccccccceecccccccccccccccccceEEEEECC
Confidence 7899999999999999999998522 2222222221100 000000000 0000000 0111578999999
Q ss_pred cccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 75 GLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 75 Gl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
|..+ +.......++.+|++++|+|+.+
T Consensus 84 Gh~~-------~~~~~~~~~~~~D~~ilVvda~~ 110 (403)
T 3sjy_A 84 GHEV-------LMATMLSGAALMDGAILVVAANE 110 (403)
T ss_dssp CCGG-------GHHHHHHHHTTCSEEEEEEETTS
T ss_pred CcHH-------HHHHHHHHHhhCCEEEEEEECCC
Confidence 9533 34567778899999999999964
No 164
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.45 E-value=7.1e-13 Score=122.34 Aligned_cols=88 Identities=18% Similarity=0.234 Sum_probs=67.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
++|+++|++|+|||||+|+|++.. +.+++++++|..+....+.+++ ..+.+|||||+.++..
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~l~liDTpG~~~~~~ 99 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG-----------------FTINIIDTPGLVEAGY 99 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT-----------------EEEEEEECCCSEETTE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC-----------------eeEEEEECCCCCCccc
Confidence 689999999999999999999985 4688899999999888888887 6899999999987654
Q ss_pred cccchhhHHHhhc--cccCEEEEEEecc
Q psy2401 82 KGEGLGNKFLAHI--RETNIVIHVIRCF 107 (363)
Q Consensus 82 ~~~~l~~~~l~~~--~~aD~il~Vvda~ 107 (363)
..+...+.+...+ ..+|++++|+++.
T Consensus 100 ~~~~~~~~i~~~l~~~~~~~il~V~~~d 127 (262)
T 3def_A 100 VNHQALELIKGFLVNRTIDVLLYVDRLD 127 (262)
T ss_dssp ECHHHHHHHHHHTTTCEECEEEEEEESS
T ss_pred chHHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 4332211121111 2789999998873
No 165
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.44 E-value=3.8e-13 Score=126.90 Aligned_cols=42 Identities=19% Similarity=0.288 Sum_probs=29.0
Q ss_pred eeEEEEeeecccCCCC------cccchhhHHHhhccccCEEEEEEecc
Q psy2401 66 AIIKLVDIAGLVSGAS------KGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 66 ~~i~lvDtpGl~~~~~------~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.++.+|||||+..... ..+.+......+++.+|++++|+|+.
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~ 178 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPA 178 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEES
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEec
Confidence 4799999999975221 11234456667889999999999973
No 166
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.44 E-value=3.1e-13 Score=131.13 Aligned_cols=72 Identities=13% Similarity=0.137 Sum_probs=58.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASKG 83 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 83 (363)
+|+++|++|+|||||+++|+ .++.|++.....+.+++ .++++|||||+.++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~-----------------~~i~iiDtPGh~~f---- 73 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG-----------------RNMVFVDAHSYPKT---- 73 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS-----------------SEEEEEECTTTTTC----
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC-----------------eEEEEEECCChHHH----
Confidence 89999999999999999999 24567777766666665 67999999998653
Q ss_pred cchhhHHHhhccccCEEEEEEeccc
Q psy2401 84 EGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 84 ~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.......++.+|++++|+| ..
T Consensus 74 ---~~~~~~~~~~aD~ailVvd-~~ 94 (370)
T 2elf_A 74 ---LKSLITALNISDIAVLCIP-PQ 94 (370)
T ss_dssp ---HHHHHHHHHTCSEEEEEEC-TT
T ss_pred ---HHHHHHHHHHCCEEEEEEc-CC
Confidence 2356677799999999999 53
No 167
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.43 E-value=7.4e-13 Score=137.77 Aligned_cols=224 Identities=13% Similarity=0.042 Sum_probs=141.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc------------ccC------CCceeecceeEEEEeCCcccccccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS------------AEN------YPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIF 64 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~------------~~~------~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~ 64 (363)
.+|+|+|++|+|||||+++|++.... ..+ ..+.|+.+....+.+.+
T Consensus 10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~---------------- 73 (665)
T 2dy1_A 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG---------------- 73 (665)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT----------------
T ss_pred cEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC----------------
Confidence 58999999999999999999853211 011 12334444444444444
Q ss_pred ceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHh-h
Q psy2401 65 PAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEK-Y 143 (363)
Q Consensus 65 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~-~ 143 (363)
..+++|||||..++ .......++.+|++++|+|+.++.. .+++..+..+..... .
T Consensus 74 -~~~nliDTpG~~~f-------~~~~~~~l~~ad~~ilVvD~~~g~~----------------~qt~~~~~~~~~~~ip~ 129 (665)
T 2dy1_A 74 -HRVFLLDAPGYGDF-------VGEIRGALEAADAALVAVSAEAGVQ----------------VGTERAWTVAERLGLPR 129 (665)
T ss_dssp -EEEEEEECCCSGGG-------HHHHHHHHHHCSEEEEEEETTTCSC----------------HHHHHHHHHHHHTTCCE
T ss_pred -EEEEEEeCCCccch-------HHHHHHHHhhcCcEEEEEcCCcccc----------------hhHHHHHHHHHHccCCE
Confidence 67999999997653 2366777899999999999854321 112223333333233 3
Q ss_pred hhhhhcccccCCchhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhh-cccccccEEEeccccccCCCchHHHHHH
Q psy2401 144 IDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFL-NLLTIKPIIFVANVKENGFKNNLLLDQL 222 (363)
Q Consensus 144 ~~~i~k~~~~g~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~-~~l~~kp~i~v~Nk~d~~~~~~~~~~~i 222 (363)
+..+||++.. . .....++++.+.+. ...+..+|++..+ .+.++ +++..+++.|--.+......+....+..
T Consensus 130 ilv~NKiD~~-~----~~~~~~~~l~~~l~-~~~~~~~Pi~~~~--~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~ 201 (665)
T 2dy1_A 130 MVVVTKLDKG-G----DYYALLEDLRSTLG-PILPIDLPLYEGG--KWVGLIDVFHGKAYRYENGEEREAEVPPEERERV 201 (665)
T ss_dssp EEEEECGGGC-C----CHHHHHHHHHHHHC-SEEECEEEEEETT--EEEEEEETTTTEEEEEETTEEEEECCCGGGHHHH
T ss_pred EEEecCCchh-h----hHHHHHHHHHHHhC-CcceEEeeecCCC--cccchhhhhhhheeecCCCceeEecCCHHHHHHH
Confidence 5678888543 1 23456666766666 3333334544322 23334 4555666655321111001234455555
Q ss_pred HHHHhcCCCcEEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeC
Q psy2401 223 KIYAHNQNIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTV 285 (363)
Q Consensus 223 ~~~~~~~~~~~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~ 285 (363)
+.+ ..++-+.+++.+++.+++||++..++.+.+...+++.+....++|+|..
T Consensus 202 ~~~-----------r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~~~~~~~pv~~~ 253 (665)
T 2dy1_A 202 QRF-----------RQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVRRGLLYPVALA 253 (665)
T ss_dssp HHH-----------HHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEEC
T ss_pred HHH-----------HHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCeeEEEEe
Confidence 444 4556777899999999999999999999999999999988899999876
No 168
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.42 E-value=9.7e-14 Score=137.56 Aligned_cols=82 Identities=23% Similarity=0.190 Sum_probs=54.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC--Ccc-----------------------------ccCCCceeecceeEEEEeCCccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL--KIS-----------------------------AENYPFCTIEPNIGIIEVPDKRL 51 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~--~~~-----------------------------~~~~p~~t~~~~~g~v~~~~~~~ 51 (363)
++|+++|++|+|||||+++|++. ... ....+++|++.....+..++
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~--- 83 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK--- 83 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS---
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC---
Confidence 68999999999999999999853 110 00135667766655566555
Q ss_pred cccccccccccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 52 KHLNNIVKTKKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 52 ~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
..+.+|||||+.++ .......++.+|++++|+|+.+
T Consensus 84 --------------~~~~iiDtpG~~~f-------~~~~~~~~~~aD~~ilVvDa~~ 119 (435)
T 1jny_A 84 --------------YFFTIIDAPGHRDF-------VKNMITGASQADAAILVVSAKK 119 (435)
T ss_dssp --------------CEEEECCCSSSTTH-------HHHHHHTSSCCSEEEEEEECST
T ss_pred --------------eEEEEEECCCcHHH-------HHHHHhhhhhcCEEEEEEECCC
Confidence 67999999997543 3356678899999999999953
No 169
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.42 E-value=7.7e-13 Score=129.81 Aligned_cols=82 Identities=22% Similarity=0.151 Sum_probs=58.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC---Cc---c-----cc------CCCceeecceeEEEEeCCccccccccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL---KI---S-----AE------NYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFP 65 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~---~~---~-----~~------~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~ 65 (363)
++|+++|++|+|||||+++|++. .. . .. ..++.|++.....+...+
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~----------------- 74 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK----------------- 74 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS-----------------
T ss_pred EEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCC-----------------
Confidence 68999999999999999999973 10 0 00 123556555443344433
Q ss_pred eeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 66 AIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 66 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
..+.+|||||+.++ .......++.+|++++|+|+.+
T Consensus 75 ~~~~iiDtpG~~~f-------~~~~~~~~~~aD~~ilVvda~~ 110 (405)
T 2c78_A 75 RHYSHVDCPGHADY-------IKNMITGAAQMDGAILVVSAAD 110 (405)
T ss_dssp CEEEEEECCCSGGG-------HHHHHHHHTTCSSEEEEEETTT
T ss_pred eEEEEEECCChHHH-------HHHHHHHHHHCCEEEEEEECCC
Confidence 67899999997643 3466677889999999999954
No 170
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.40 E-value=6.3e-13 Score=134.68 Aligned_cols=82 Identities=16% Similarity=0.215 Sum_probs=57.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccc----------------c------CCCceeecceeEEEEeCCcccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISA----------------E------NYPFCTIEPNIGIIEVPDKRLKHLNNIVKT 60 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~----------------~------~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~ 60 (363)
.+|+++|++|+|||||+++|++..... . ..++.|+......+.+.+
T Consensus 14 ~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~------------ 81 (529)
T 2h5e_A 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD------------ 81 (529)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT------------
T ss_pred CEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC------------
Confidence 689999999999999999998631111 1 123444444445555555
Q ss_pred ccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 61 KKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 61 ~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
..+++|||||+.++.. .....++.+|++++|+|+.+
T Consensus 82 -----~~i~liDTPG~~df~~-------~~~~~l~~aD~~IlVvDa~~ 117 (529)
T 2h5e_A 82 -----CLVNLLDTPGHEDFSE-------DTYRTLTAVDCCLMVIDAAK 117 (529)
T ss_dssp -----EEEEEECCCCSTTCCH-------HHHHGGGGCSEEEEEEETTT
T ss_pred -----eEEEEEECCCChhHHH-------HHHHHHHHCCEEEEEEeCCc
Confidence 6899999999866543 56677899999999999954
No 171
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.39 E-value=1.8e-12 Score=120.17 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=66.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
++|+++|.+|+|||||+|+|++.. ..+++++++|..+....+...+ ..+.+|||||+.++..
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~l~iiDTpG~~~~~~ 102 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG-----------------FTLNIIDTPGLIEGGY 102 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT-----------------EEEEEEECCCSEETTE
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC-----------------eEEEEEECCCCCCCcc
Confidence 689999999999999999999875 4578888888888777776665 6799999999977543
Q ss_pred cccchhhHHHh--hccccCEEEEEEecc
Q psy2401 82 KGEGLGNKFLA--HIRETNIVIHVIRCF 107 (363)
Q Consensus 82 ~~~~l~~~~l~--~~~~aD~il~Vvda~ 107 (363)
........+.. ..+.+|++++|+|+.
T Consensus 103 ~~~~~~~~i~~~~~~~~~d~il~v~~~d 130 (270)
T 1h65_A 103 INDMALNIIKSFLLDKTIDVLLYVDRLD 130 (270)
T ss_dssp ECHHHHHHHHHHTTTCEECEEEEEEESS
T ss_pred chHHHHHHHHHHhhcCCCCEEEEEEeCC
Confidence 32211112111 124799999998873
No 172
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.38 E-value=4.9e-13 Score=123.02 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=30.4
Q ss_pred ccccEEEeccccccCCCchHHHHHHHHHHhc-CCCcEEEeeHHH
Q psy2401 198 TIKPIIFVANVKENGFKNNLLLDQLKIYAHN-QNIPIIIICAKL 240 (363)
Q Consensus 198 ~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~-~~~~~i~~sa~~ 240 (363)
...|+++|+||.|+. .....+.+++++.. .+.+++.+||+.
T Consensus 197 ~~~piilV~NK~Dl~--~~~~v~~~~~~~~~~~~~~~~e~SAk~ 238 (255)
T 3c5h_A 197 TKKPIVVVLTKCDEG--VERYIRDAHTFALSKKNLQVVETSARS 238 (255)
T ss_dssp TTCCEEEEEECGGGB--CHHHHHHHHHHHHTSSSCCEEECBTTT
T ss_pred CCCCEEEEEEccccc--ccHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 468999999999964 23334566676665 478899999984
No 173
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.38 E-value=1.3e-12 Score=133.99 Aligned_cols=87 Identities=14% Similarity=0.063 Sum_probs=51.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccc---------c------CCCceeecceeEEEEeCCcccccccccccccccccee
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISA---------E------NYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAI 67 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~---------~------~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~ 67 (363)
++|+|+|++|+|||||+++|+.....+ . ...+.|+......+.|.+. ......
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~------------~g~~~~ 72 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKAS------------DGETYQ 72 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECT------------TSCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecC------------CCCeEE
Confidence 589999999999999999997531111 1 1235566555555555320 000167
Q ss_pred EEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 68 IKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 68 i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
+++|||||+.++. ......++.+|++++|+|+.+
T Consensus 73 l~liDTPGh~dF~-------~ev~~~l~~aD~aILVVDa~~ 106 (599)
T 3cb4_D 73 LNFIDTPGHVDFS-------YEVSRSLAACEGALLVVDAGQ 106 (599)
T ss_dssp EEEEECCCCGGGH-------HHHHHHHHHCSEEEEEEETTT
T ss_pred EEEEECCCchHHH-------HHHHHHHHHCCEEEEEEECCC
Confidence 9999999986543 355667789999999999964
No 174
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.37 E-value=2e-12 Score=132.35 Aligned_cols=87 Identities=16% Similarity=0.050 Sum_probs=54.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc---------ccC------CCceeecceeEEEEeCCcccccccccccccccccee
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS---------AEN------YPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAI 67 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~---------~~~------~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~ 67 (363)
.+|+|+|++|+|||||+++|+..... ..+ ..+.|+......+.+.+. ......
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~------------dg~~~~ 74 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAK------------DGNTYK 74 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECT------------TSCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcC------------CCCeEE
Confidence 58999999999999999999753110 011 134566555555555320 000157
Q ss_pred EEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 68 IKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 68 i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
+++|||||+.++.. .....++.+|++++|+|+.+
T Consensus 75 inliDTPGh~dF~~-------ev~r~l~~aD~aILVVDa~~ 108 (600)
T 2ywe_A 75 LHLIDTPGHVDFSY-------EVSRALAACEGALLLIDASQ 108 (600)
T ss_dssp EEEECCCCSGGGHH-------HHHHHHHTCSEEEEEEETTT
T ss_pred EEEEECCCcHhHHH-------HHHHHHHhCCEEEEEEECCC
Confidence 99999999876432 55566789999999999964
No 175
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.37 E-value=3.1e-12 Score=125.21 Aligned_cols=82 Identities=21% Similarity=0.150 Sum_probs=57.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc----------------ccCCCceeecceeEEEEeCCccccccccccccccccce
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS----------------AENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPA 66 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~----------------~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~ 66 (363)
++|+++|++|+|||||+++|++.... ....++.|++.....+...+ .
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-----------------~ 66 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA-----------------R 66 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS-----------------C
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCC-----------------e
Confidence 68999999999999999999874110 00123445554333333333 5
Q ss_pred eEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 67 IIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 67 ~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.+.+|||||+.++ .......++.+|++++|+|+.+
T Consensus 67 ~~~iiDtpG~~~f-------~~~~~~~~~~aD~~ilVvda~~ 101 (397)
T 1d2e_A 67 HYAHTDCPGHADY-------VKNMITGTAPLDGCILVVAAND 101 (397)
T ss_dssp EEEEEECSSHHHH-------HHHHHHTSSCCSEEEEEEETTT
T ss_pred EEEEEECCChHHH-------HHHHHhhHhhCCEEEEEEECCC
Confidence 7899999997542 2355677889999999999964
No 176
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.36 E-value=5.5e-13 Score=124.69 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=23.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKI 27 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~ 27 (363)
.+|+++|.+|||||||+|+|++...
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCCc
Confidence 5899999999999999999999754
No 177
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.36 E-value=3.4e-13 Score=134.49 Aligned_cols=81 Identities=20% Similarity=0.188 Sum_probs=60.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC--cc-----------------------ccC------CCceeecceeEEEEeCCccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK--IS-----------------------AEN------YPFCTIEPNIGIIEVPDKRL 51 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~--~~-----------------------~~~------~p~~t~~~~~g~v~~~~~~~ 51 (363)
++|+++|++|+|||||+|+|++.. .. +.+ .++.|++.....+..++
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~--- 84 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK--- 84 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS---
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC---
Confidence 689999999999999999998631 10 001 14567776666666555
Q ss_pred cccccccccccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecc
Q psy2401 52 KHLNNIVKTKKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 52 ~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.++.+|||||+.+ +.......++.+|++++|+|+.
T Consensus 85 --------------~~~~iiDtPGh~~-------f~~~~~~~~~~aD~~ilVvda~ 119 (458)
T 1f60_A 85 --------------YQVTVIDAPGHRD-------FIKNMITGTSQADCAILIIAGG 119 (458)
T ss_dssp --------------EEEEEEECCCCTT-------HHHHHHHSSSCCSEEEEEEECS
T ss_pred --------------ceEEEEECCCcHH-------HHHHHHhhhhhCCEEEEEEeCC
Confidence 6799999999643 3446677789999999999995
No 178
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.36 E-value=2e-12 Score=125.06 Aligned_cols=44 Identities=11% Similarity=-0.041 Sum_probs=27.3
Q ss_pred ccccEEEeccccccCCCchHH---HHHHHHHHhcCCCcEEEeeHHHHH
Q psy2401 198 TIKPIIFVANVKENGFKNNLL---LDQLKIYAHNQNIPIIIICAKLEE 242 (363)
Q Consensus 198 ~~kp~i~v~Nk~d~~~~~~~~---~~~i~~~~~~~~~~~i~~sa~~e~ 242 (363)
...|+|+|+||+|.. ...+. .+.+.+++...+.+++++||+...
T Consensus 173 ~~~piIlV~NK~Dl~-~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~ 219 (361)
T 2qag_A 173 NKVNIVPVIAKADTL-TLKERERLKKRILDEIEEHNIKIYHLPDAESD 219 (361)
T ss_dssp S-SCEEEEEECCSSS-CHHHHHHHHHHHHHHTTCC-CCSCCCC-----
T ss_pred cCCCEEEEEECCCCC-CHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCC
Confidence 467999999999974 22222 246677777778899999998543
No 179
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.36 E-value=1.2e-13 Score=141.68 Aligned_cols=82 Identities=17% Similarity=0.138 Sum_probs=39.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-cc------------------------------ccCCCceeecceeEEEEeCCccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-IS------------------------------AENYPFCTIEPNIGIIEVPDKRL 51 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~------------------------------~~~~p~~t~~~~~g~v~~~~~~~ 51 (363)
++|+++|++|+|||||+|+|++.. .. ....+++|++.....+..++
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~--- 254 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK--- 254 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC---
Confidence 579999999999999999996421 00 01135667766666666555
Q ss_pred cccccccccccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 52 KHLNNIVKTKKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 52 ~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
..+.||||||+.++.. .....++.+|++|+|||+.+
T Consensus 255 --------------~~i~iiDTPGh~~f~~-------~~~~~~~~aD~alLVVDa~~ 290 (592)
T 3mca_A 255 --------------KIYEIGDAPGHRDFIS-------GMIAGASSADFAVLVVDSSQ 290 (592)
T ss_dssp ------------------CCEEESSSEEEE-------ECCC-------CCSEEEEEE
T ss_pred --------------eEEEEEECCChHHHHH-------HHHHHHhhCCEEEEEEECCC
Confidence 5789999999865433 33456688999999999964
No 180
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.35 E-value=3.9e-14 Score=142.15 Aligned_cols=83 Identities=18% Similarity=0.203 Sum_probs=63.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
+.+|+++|++++|||||+++|++.....+..+++|.+.....+.+++ ..+++|||||+.++..
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~-----------------~~i~~iDTPGhe~f~~ 66 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN-----------------GMITFLDTPGHAAFTS 66 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS-----------------SCCCEECCCTTTCCTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC-----------------EEEEEEECCCcHHHHH
Confidence 46899999999999999999997655555557777776655555555 5689999999876654
Q ss_pred cccchhhHHHhhccccCEEEEEEeccc
Q psy2401 82 KGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 82 ~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.. ...++.+|++++|+|+.+
T Consensus 67 ~~-------~~~~~~aD~aILVVda~~ 86 (501)
T 1zo1_I 67 MR-------ARGAQATDIVVLVVAADD 86 (501)
T ss_dssp SB-------CSSSBSCSSEEEEEETTT
T ss_pred HH-------HHHHhhCCEEEEEeeccc
Confidence 32 245688999999999854
No 181
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.35 E-value=8.5e-13 Score=136.70 Aligned_cols=197 Identities=15% Similarity=0.116 Sum_probs=130.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHH---cCCc---------cccCC------CceeecceeEEEEeCCcccccccccccccccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALT---KLKI---------SAENY------PFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIF 64 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt---~~~~---------~~~~~------p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~ 64 (363)
++|||+||.++|||||..+|. |... ...++ .+.|+......+.|++
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~---------------- 66 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN---------------- 66 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS----------------
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC----------------
Confidence 579999999999999999995 3211 11222 2667777666777777
Q ss_pred ceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccCCceeeecCccCcccchhhhHHHHhHhhHHHHHh-h
Q psy2401 65 PAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEVIQTELILSDLAILEK-Y 143 (363)
Q Consensus 65 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~~~~~~v~~~~dp~~d~~~i~~el~~~~~~~~~~-~ 143 (363)
..++++||||..++.. +..+.++.+|.+|+||||.++.. .+++..|+.+..... +
T Consensus 67 -~~iNlIDTPGH~DF~~-------Ev~raL~~~DgavlVVDa~~GV~----------------~qT~~v~~~a~~~~lp~ 122 (638)
T 3j25_A 67 -TKVNIIDTPGHMDFLA-------EVYRSLSVLDGAILLISAKDGVQ----------------AQTRILFHALRKMGIPT 122 (638)
T ss_dssp -CBCCCEECCCSSSTHH-------HHHHHHTTCSEEECCEESSCTTC----------------SHHHHHHHHHHHHTCSC
T ss_pred -EEEEEEECCCcHHHHH-------HHHHHHHHhCEEEEEEeCCCCCc----------------HHHHHHHHHHHHcCCCe
Confidence 6799999999988765 77788899999999999976542 345777777666655 4
Q ss_pred hhhhhcccccCCchhHHHHHHHHHHHhhhcCCCcccccCCChHHHHHHhhhcccccccEEEeccccccCCCchHHHHHHH
Q psy2401 144 IDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLK 223 (363)
Q Consensus 144 ~~~i~k~~~~g~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~e~~~~~~~~~l~~kp~i~v~Nk~d~~~~~~~~~~~i~ 223 (363)
+.++||+++.+. +...+++++++.|.... ++.++.|.- ++..
T Consensus 123 i~~INKmDr~~a----~~~~~~~~i~~~l~~~~---------------------------~~~~~~~~~--~~~~----- 164 (638)
T 3j25_A 123 IFFINKIDQNGI----DLSTVYQDIKEKLSAEI---------------------------VIKQKVELY--PNVC----- 164 (638)
T ss_dssp EECCEECCSSSC----CSHHHHHHHHHTTCCCC---------------------------CCCCCCCSC--GGGC-----
T ss_pred EEEEeccccccC----CHHHHHHHHHHHhCCCc---------------------------cccceeEee--cccc-----
Confidence 677888855432 34455555555554211 011122210 0000
Q ss_pred HHHhcCCCcEEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHHhCCCEEEEeC
Q psy2401 224 IYAHNQNIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTV 285 (363)
Q Consensus 224 ~~~~~~~~~~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~~l~li~~ft~ 285 (363)
. .-...+...+.+++.+++.++.|+++..++...+...+...+....+.|+|-.
T Consensus 165 -------~-~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~g 218 (638)
T 3j25_A 165 -------V-TNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHG 218 (638)
T ss_dssp -------C-CCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCC
T ss_pred -------c-cccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhccccccccccc
Confidence 0 00012333445566667888899999888888888888888888888888865
No 182
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.32 E-value=6.8e-12 Score=121.11 Aligned_cols=105 Identities=17% Similarity=0.228 Sum_probs=60.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccc-------------------------
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNI------------------------- 57 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~------------------------- 57 (363)
.+|+++|.+|||||||+|+|+|..........+|..|..-..............+
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 3799999999999999999999754333333344444332221110000000000
Q ss_pred ------cccc-------cccceeEEEEeeecccCCCCcc------cchhhHHHhhccccCEEEEEEecc
Q psy2401 58 ------VKTK-------KIFPAIIKLVDIAGLVSGASKG------EGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 58 ------~~~~-------~~~~~~i~lvDtpGl~~~~~~~------~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
+.+. ......+.+|||||+......+ ..+...+..+++.+|++++|+++.
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~ 183 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPA 183 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEET
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecc
Confidence 0000 0011368999999998753321 122345567789999999999874
No 183
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.32 E-value=1.1e-11 Score=127.10 Aligned_cols=97 Identities=11% Similarity=0.086 Sum_probs=56.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCC-ceeecceeEEEEeCCcccccccc-cccc--ccccceeEEEEeeeccc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYP-FCTIEPNIGIIEVPDKRLKHLNN-IVKT--KKIFPAIIKLVDIAGLV 77 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p-~~t~~~~~g~v~~~~~~~~~l~~-~~~~--~~~~~~~i~lvDtpGl~ 77 (363)
+.+|+++|++|+|||||+++|++.... ...| +.|.+.....+.+.. ...... .... .......+++|||||+.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~-~~e~ggiT~~ig~~~~~~~~--~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVA-SREAGGITQHIGATEIPMDV--IEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHS-CC----CCCBTTEEEEEHHH--HHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCc-cccCCceecccCeEEEeech--hhhhccccccccccccccCCEEEEECCCcH
Confidence 468999999999999999999975322 1112 334333222332210 000000 0000 00011259999999987
Q ss_pred CCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 78 SGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 78 ~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
++..... ..++.+|++++|+|+.+
T Consensus 82 ~F~~~~~-------r~~~~aD~aILVvDa~~ 105 (594)
T 1g7s_A 82 AFTTLRK-------RGGALADLAILIVDINE 105 (594)
T ss_dssp CCTTSBC-------SSSBSCSEEEEEEETTT
T ss_pred HHHHHHH-------HHHhhCCEEEEEEECCC
Confidence 7655322 44688999999999964
No 184
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.32 E-value=4.2e-12 Score=132.70 Aligned_cols=101 Identities=19% Similarity=0.246 Sum_probs=61.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeeccee--------EEEEeCCcc-ccc------------------
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNI--------GIIEVPDKR-LKH------------------ 53 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~--------g~v~~~~~~-~~~------------------ 53 (363)
+++|+++|.+|+|||||+|+|+|.. +.+++.|+|. .+.. .++.+.+.. ...
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~-~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTA-VLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTC-CCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCcc-ceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 4689999999999999999999985 4566666552 1110 011111100 000
Q ss_pred --------------cccccccccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecc
Q psy2401 54 --------------LNNIVKTKKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 54 --------------l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
...++.|.......+.+|||||+..... ........++.+|++++|+|++
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----~~~~~~~~i~~aD~vL~Vvda~ 211 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----RNELSLGYVNNCHAILFVMRAS 211 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----CHHHHTHHHHSSSEEEEEEETT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----HHHHHHHHHHhCCEEEEEEeCC
Confidence 0011222222224699999999875321 2245567779999999999985
No 185
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.31 E-value=2.1e-12 Score=114.92 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=50.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccc---cCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISA---ENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSG 79 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~---~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
.+|+++|++|||||||+++|++..... +..|.++... .+ ..+.+|||||....
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-------~~-----------------~~~~l~Dt~G~~~~ 68 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DG-----------------SGVTLVDFPGHVKL 68 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-------GG-----------------SSCEEEECCCCGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-------eC-----------------ceEEEEECCCcHHH
Confidence 689999999999999999999864322 1222222111 11 57899999998544
Q ss_pred CCcccchhhHHH-hhccccCEEEEEEecc
Q psy2401 80 ASKGEGLGNKFL-AHIRETNIVIHVIRCF 107 (363)
Q Consensus 80 ~~~~~~l~~~~l-~~~~~aD~il~Vvda~ 107 (363)
.. ....++ ..+..+|++++|+|+.
T Consensus 69 ~~----~~~~~~~~~~~~~~~~i~v~D~~ 93 (218)
T 1nrj_B 69 RY----KLSDYLKTRAKFVKGLIFMVDST 93 (218)
T ss_dssp TH----HHHHHHHHHGGGEEEEEEEEETT
T ss_pred HH----HHHHHHHhccccCCEEEEEEECC
Confidence 32 112222 1223489999999985
No 186
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.30 E-value=8.8e-12 Score=110.05 Aligned_cols=86 Identities=22% Similarity=0.260 Sum_probs=49.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCC--ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLK--ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSG 79 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~--~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
+.+|+|+|++|||||||+|+|++.. ..+++.+++|... +.+.+.+ .+.++||||+...
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~--~~~~~~~------------------~~~l~Dt~G~~~~ 85 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLI--NLFEVAD------------------GKRLVDLPGYGYA 85 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-------------CCE--EEEEEET------------------TEEEEECCCCC--
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceee--EEEEecC------------------CEEEEECcCCccc
Confidence 3689999999999999999999864 3345566666432 3333322 3679999998542
Q ss_pred CCcc------cchhhHHHhhccccCEEEEEEecc
Q psy2401 80 ASKG------EGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 80 ~~~~------~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.... ......++...+.+|.+++|+|+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 119 (210)
T 1pui_A 86 EVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIR 119 (210)
T ss_dssp ----CCHHHHHHHHHHHHHHCTTEEEEEEEEETT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECC
Confidence 1111 111123344446789999999984
No 187
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.30 E-value=1.5e-12 Score=130.12 Aligned_cols=82 Identities=22% Similarity=0.176 Sum_probs=47.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc-------------------------cc------CCCceeecceeEEEEeCCccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS-------------------------AE------NYPFCTIEPNIGIIEVPDKRL 51 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~-------------------------~~------~~p~~t~~~~~g~v~~~~~~~ 51 (363)
++|+++|++|+|||||+++|+..... +. ..++.|++.....+.+++
T Consensus 44 ~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~--- 120 (467)
T 1r5b_A 44 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH--- 120 (467)
T ss_dssp EEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS---
T ss_pred eEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC---
Confidence 58999999999999999999742100 00 123455555544555554
Q ss_pred cccccccccccccceeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 52 KHLNNIVKTKKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 52 ~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
..+.+|||||..++.. .....++.+|++|+|+|+.+
T Consensus 121 --------------~~~~iiDtPGh~~f~~-------~~~~~~~~aD~~ilVvDa~~ 156 (467)
T 1r5b_A 121 --------------RRFSLLDAPGHKGYVT-------NMINGASQADIGVLVISARR 156 (467)
T ss_dssp --------------EEEEECCCCC------------------TTSCSEEEEEEECST
T ss_pred --------------eEEEEEECCCcHHHHH-------HHHhhcccCCEEEEEEeCCc
Confidence 6799999999865543 45566789999999999954
No 188
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.29 E-value=8.7e-12 Score=108.49 Aligned_cols=78 Identities=21% Similarity=0.255 Sum_probs=50.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccc---cCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISA---ENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSG 79 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~---~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
++|+++|++|||||||+|+|++..... +..|+++.+ +.+ ..+.+|||||....
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~-------~~~-----------------~~~~l~Dt~G~~~~ 104 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------YDG-----------------SGVTLVDFPGHVKL 104 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSCC------------C-------CCC-----------------TTCSEEEETTCCBS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee-------ecC-----------------CeEEEEECCCCchH
Confidence 689999999999999999999864322 122222211 122 56889999998665
Q ss_pred CCcccchhhHHHhhccccCEEEEEEecc
Q psy2401 80 ASKGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 80 ~~~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
... +...+...+..+|++++|+|++
T Consensus 105 ~~~---~~~~~~~~~~~~~~~i~v~d~~ 129 (193)
T 2ged_A 105 RYK---LSDYLKTRAKFVKGLIFMVDST 129 (193)
T ss_dssp SCC---HHHHHHHHGGGEEEEEEEEETT
T ss_pred HHH---HHHHHHhhcccCCEEEEEEECC
Confidence 432 1222333446699999999985
No 189
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.25 E-value=5.3e-11 Score=126.77 Aligned_cols=99 Identities=21% Similarity=0.172 Sum_probs=60.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccccC---------------CCceeecceeEEEEeCCccccccccccccccccce
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISAEN---------------YPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPA 66 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~---------------~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~ 66 (363)
++|+|+|++|+|||||+++|++.. ...+. .++.|+......+.+....- .+..+.........
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~-~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDE-DVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHH-HHHHCSSCCCSSEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccc-ccccccccccCCCc
Confidence 589999999999999999998641 11111 23345555444444431000 00000000000126
Q ss_pred eEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecccC
Q psy2401 67 IIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKD 109 (363)
Q Consensus 67 ~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~~ 109 (363)
.+++|||||+.++.. .....++.+|++|+|+|+.++
T Consensus 99 ~i~liDTPG~~df~~-------~~~~~l~~aD~ailVvDa~~g 134 (842)
T 1n0u_A 99 LINLIDSPGHVDFSS-------EVTAALRVTDGALVVVDTIEG 134 (842)
T ss_dssp EEEEECCCCCCSSCH-------HHHHHHHTCSEEEEEEETTTB
T ss_pred eEEEEECcCchhhHH-------HHHHHHHhCCEEEEEEeCCCC
Confidence 799999999987554 566777999999999999643
No 190
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.24 E-value=3.8e-11 Score=129.36 Aligned_cols=82 Identities=22% Similarity=0.209 Sum_probs=54.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCcc----------------ccCCCceeecceeEEEEeCCccccccccccccccccce
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKIS----------------AENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPA 66 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~----------------~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~ 66 (363)
++|+++|++|+|||||+++|++.... ....++.|++.....+...+ .
T Consensus 297 lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~-----------------~ 359 (1289)
T 3avx_A 297 VNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPT-----------------R 359 (1289)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSS-----------------C
T ss_pred eEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCC-----------------E
Confidence 68999999999999999999873100 01123444444333333322 6
Q ss_pred eEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 67 IIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 67 ~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
.+.+|||||+.++ .......++.+|++|+|||+.+
T Consensus 360 kI~IIDTPGHedF-------~~~mi~gas~AD~aILVVDAtd 394 (1289)
T 3avx_A 360 HYAHVDCPGHADY-------VKNMITGAAQMDGAILVVAATD 394 (1289)
T ss_dssp EEEEEECCCHHHH-------HHHHHHTSCCCSEEEEEEETTT
T ss_pred EEEEEECCChHHH-------HHHHHHHHhhCCEEEEEEcCCc
Confidence 7999999998653 2356677899999999999964
No 191
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.19 E-value=8.6e-11 Score=113.24 Aligned_cols=22 Identities=45% Similarity=0.735 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..|+++|+||||||||++.|+.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999974
No 192
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.18 E-value=2.2e-11 Score=117.14 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..|+|+|+||||||||+|+|++
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999996
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.16 E-value=3.5e-11 Score=115.81 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=22.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKI 27 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~ 27 (363)
.+|+++|.+|||||||+|+|+|...
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~ 56 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDF 56 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCc
Confidence 5899999999999999999999754
No 194
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.16 E-value=1.2e-10 Score=110.64 Aligned_cols=82 Identities=13% Similarity=0.157 Sum_probs=54.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCcc-ccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCCc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKIS-AENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGASK 82 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~-~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 82 (363)
||.++|..|||||||++.+.+.... .......|+......+ .. . .++++|||||..++...
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v--~~-~---------------v~LqIWDTAGQErf~~~ 62 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--ST-L---------------IDLAVMELPGQLNYFEP 62 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE--CS-S---------------SCEEEEECCSCSSSCCC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE--cc-E---------------EEEEEEECCCchhccch
Confidence 6899999999999999998865221 1111223444443332 11 1 67999999998776421
Q ss_pred ccchhhHHHhhccccCEEEEEEecc
Q psy2401 83 GEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 83 ~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.+ ......|+++++++|+|+.
T Consensus 63 --~l--~~~~yyr~a~~~IlV~Dit 83 (331)
T 3r7w_B 63 --SY--DSERLFKSVGALVYVIDSQ 83 (331)
T ss_dssp --SH--HHHHHHTTCSEEEEECCCS
T ss_pred --hh--hhhhhccCCCEEEEEEECC
Confidence 01 1124458999999999984
No 195
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.14 E-value=4e-10 Score=114.65 Aligned_cols=103 Identities=15% Similarity=0.240 Sum_probs=59.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCc---cccCCCceeecceeEEEEeC------Cc--------ccccccc---------
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKI---SAENYPFCTIEPNIGIIEVP------DK--------RLKHLNN--------- 56 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~---~~~~~p~~t~~~~~g~v~~~------~~--------~~~~l~~--------- 56 (363)
.+|+++|.+|||||||+|+|++... .+++.|+|+.. .+...-. |. .+..+..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~--~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCF--VAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSE--EEEECCSSSEEECCC------------------CCCTTE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceE--EEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 5899999999999999999999865 47777876431 1111100 00 0000000
Q ss_pred -ccccccccceeEEEEeeecccCCCC--cccc--hhhHHHhhccccCEEEEEEecc
Q psy2401 57 -IVKTKKIFPAIIKLVDIAGLVSGAS--KGEG--LGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 57 -~~~~~~~~~~~i~lvDtpGl~~~~~--~~~~--l~~~~l~~~~~aD~il~Vvda~ 107 (363)
.+.-......++.+|||||+..+.. ..+. +.......++.+|++++|+|+.
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~ 199 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAH 199 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETT
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCC
Confidence 0000000113689999999976322 1222 2234455678899999999995
No 196
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.11 E-value=4.3e-10 Score=105.94 Aligned_cols=48 Identities=13% Similarity=-0.019 Sum_probs=28.9
Q ss_pred ccccEEEeccccccCCCchH---HHHHHHHHHhcCCCcEEEeeHHHHHHHhcC
Q psy2401 198 TIKPIIFVANVKENGFKNNL---LLDQLKIYAHNQNIPIIIICAKLEEEISDL 247 (363)
Q Consensus 198 ~~kp~i~v~Nk~d~~~~~~~---~~~~i~~~~~~~~~~~i~~sa~~e~~i~el 247 (363)
...|+++|+||.|.. .+.+ ..+.+++++..++.+++.+||+.. ++.++
T Consensus 154 ~~~~iilV~~K~Dl~-~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~ 204 (301)
T 2qnr_A 154 NKVNIVPVIAKADTL-TLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDED 204 (301)
T ss_dssp TTSCEEEEECCGGGS-CHHHHHHHHHHHHHHHHHTTCCCCCCC----------
T ss_pred hcCCEEEEEEeCCCC-CHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHH
Confidence 346899999999964 2222 235677778888899999999865 55444
No 197
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.08 E-value=9.7e-11 Score=122.43 Aligned_cols=41 Identities=15% Similarity=0.189 Sum_probs=29.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEE
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGI 43 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~ 43 (363)
.+|+++|.+|+|||||+|+|+|..+....-..+|..|..-.
T Consensus 52 p~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~ 92 (772)
T 3zvr_A 52 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQ 92 (772)
T ss_dssp SEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEE
Confidence 58999999999999999999997653222234565554433
No 198
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.07 E-value=1e-09 Score=105.21 Aligned_cols=22 Identities=41% Similarity=0.723 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..++++|+||+|||||+|.|++
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999974
No 199
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.05 E-value=8.9e-11 Score=113.75 Aligned_cols=84 Identities=21% Similarity=0.286 Sum_probs=59.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC-------CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeec
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL-------KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAG 75 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~-------~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpG 75 (363)
.+++++|.+|+|||||+|+|++. .+.++++|++|.++... .+.+ .+.++||||
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~--~~~~------------------~~~liDtPG 220 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDI--PLDE------------------ESSLYDTPG 220 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEE--ESSS------------------SCEEEECCC
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEE--EecC------------------CeEEEeCCC
Confidence 57999999999999999999985 34478999999876643 3332 378999999
Q ss_pred ccCCCCcccchhhHHHhh---ccccCEEEEEEec
Q psy2401 76 LVSGASKGEGLGNKFLAH---IRETNIVIHVIRC 106 (363)
Q Consensus 76 l~~~~~~~~~l~~~~l~~---~~~aD~il~Vvda 106 (363)
+.........+..+.+.. ....+.++++++.
T Consensus 221 ~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~ 254 (368)
T 3h2y_A 221 IINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNE 254 (368)
T ss_dssp BCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECT
T ss_pred cCcHHHHHHHhhHHHHHHhccccccCceEEEEcC
Confidence 987654444455555544 4667888888886
No 200
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.03 E-value=1.1e-10 Score=113.13 Aligned_cols=85 Identities=21% Similarity=0.198 Sum_probs=67.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC------CccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL------KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGL 76 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~------~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl 76 (363)
.+++++|.||+|||||+|+|++. .+.++++|++|.++... .+. ..+.++||||+
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~--~~~------------------~~~~liDtPG~ 222 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEI--PLE------------------SGATLYDTPGI 222 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEE--ECS------------------TTCEEEECCSC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEE--EeC------------------CCeEEEeCCCc
Confidence 57999999999999999999986 56688999999876543 332 24789999999
Q ss_pred cCCCCcccchhhHHHhhc---cccCEEEEEEecc
Q psy2401 77 VSGASKGEGLGNKFLAHI---RETNIVIHVIRCF 107 (363)
Q Consensus 77 ~~~~~~~~~l~~~~l~~~---~~aD~il~Vvda~ 107 (363)
.........+..+.+..+ +..|.++++++..
T Consensus 223 ~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~ 256 (369)
T 3ec1_A 223 INHHQMAHFVDARDLKIITPKREIHPRVYQLNEG 256 (369)
T ss_dssp CCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTT
T ss_pred CcHHHHHHHHhHHHHHHHhcccccCceEEEEcCC
Confidence 876544555556666666 7899999999973
No 201
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.98 E-value=1.8e-09 Score=106.17 Aligned_cols=45 Identities=16% Similarity=0.039 Sum_probs=28.4
Q ss_pred ccccEEEeccccccCCCchH---HHHHHHHHHhcCCCcEEEeeHHHHHH
Q psy2401 198 TIKPIIFVANVKENGFKNNL---LLDQLKIYAHNQNIPIIIICAKLEEE 243 (363)
Q Consensus 198 ~~kp~i~v~Nk~d~~~~~~~---~~~~i~~~~~~~~~~~i~~sa~~e~~ 243 (363)
...|+|+|+||+|.. .+.+ ..+.+.+.+..++++++.+||+...+
T Consensus 166 ~~v~iIlVinK~Dll-~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~ 213 (418)
T 2qag_C 166 EKVNIIPLIAKADTL-TPEECQQFKKQIMKEIQEHKIKIYEFPETDDEE 213 (418)
T ss_dssp TTSEEEEEEESTTSS-CHHHHHHHHHHHHHHHHHHTCCCCCCC------
T ss_pred ccCcEEEEEEcccCc-cHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcC
Confidence 467999999999963 2222 23566677777788899999875443
No 202
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.92 E-value=3.1e-09 Score=101.67 Aligned_cols=22 Identities=45% Similarity=0.847 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..++|+|+||||||||+|+|++
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999985
No 203
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.91 E-value=3.3e-09 Score=98.32 Aligned_cols=67 Identities=18% Similarity=0.204 Sum_probs=35.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcccccc-----ccccccccccceeEEEEeeecc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHL-----NNIVKTKKIFPAIIKLVDIAGL 76 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l-----~~~~~~~~~~~~~i~lvDtpGl 76 (363)
.++++|+|+||||||||+|+|+| ...|..|.+.+.+..+... ..+..+....+..++++|+||+
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g-----------~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~ 70 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFK-----------SQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGF 70 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHH-----------HHC------------CCCCCSCCEEEESCC----CCEEEEECCCC-
T ss_pred eeEEEEECCCCCCHHHHHHHHhC-----------CCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhh
Confidence 36899999999999999999999 4455566666555332110 1122233344457899999998
Q ss_pred cCC
Q psy2401 77 VSG 79 (363)
Q Consensus 77 ~~~ 79 (363)
...
T Consensus 71 g~~ 73 (270)
T 3sop_A 71 GDQ 73 (270)
T ss_dssp -CC
T ss_pred hhh
Confidence 653
No 204
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.89 E-value=2.3e-09 Score=95.39 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
.+|+++|++|||||||++.|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 205
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.87 E-value=1.2e-08 Score=100.11 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=21.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCC
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLK 26 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~ 26 (363)
+++|+|+||||||||+|+|+|..
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 59999999999999999999963
No 206
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.82 E-value=3.1e-09 Score=99.18 Aligned_cols=59 Identities=32% Similarity=0.474 Sum_probs=37.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGAS 81 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 81 (363)
.+++++|.||||||||+|+|++.. +.+++.|++|.+++. +.++ ..+.++||||+.....
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~~------------------~~~~l~DtpG~~~~~~ 180 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKVG------------------KELELLDTPGILWPKF 180 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEET------------------TTEEEEECCCCCCSCC
T ss_pred ceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEeC------------------CCEEEEECcCcCCCCC
Confidence 579999999999999999999985 779999999988753 3332 3589999999976543
No 207
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.75 E-value=5.4e-08 Score=88.73 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=26.6
Q ss_pred eeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEecc
Q psy2401 66 AIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 66 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
..+.+|||||..+.... ..++..+...+.. +++++|+|+.
T Consensus 109 ~d~iiiDtpG~~~~~~~-~~l~~~~~~~~~~-~~iv~vvD~~ 148 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLF-HEFGVRLMENLPY-PLVVYISDPE 148 (262)
T ss_dssp CSEEEEECCSSHHHHHH-SHHHHHHHHTSSS-CEEEEEECGG
T ss_pred CCEEEEeCCCccchhhh-hhhHHHHHHHHhh-ceEEeccchh
Confidence 47899999998643221 1123344456666 8999999985
No 208
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.60 E-value=2.2e-08 Score=92.40 Aligned_cols=58 Identities=26% Similarity=0.369 Sum_probs=38.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCC-ccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLK-ISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSGA 80 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~-~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 80 (363)
.+++++|.||+|||||+|+|++.. ..+++.|++|.... .+..+ ..+++|||||+....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~------------------~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSLE------------------NGVKILDTPGILYKN 158 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEECT------------------TSCEEESSCEECCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEeC------------------CCEEEEECCCcccCc
Confidence 489999999999999999999985 46888899887664 22222 358899999998654
No 209
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.59 E-value=8.8e-08 Score=97.71 Aligned_cols=66 Identities=26% Similarity=0.195 Sum_probs=46.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccccccccccccccceeEEEEeeecccCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVSG 79 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
.+|+++|+||+|||||+|+|+|....+ +++++|...+.|...|.-+- | ......+.++||||+.+.
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~---------~-~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPH---------P-KKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEEC---------S-SSTTCEEEEEEECCBCCG
T ss_pred cEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeeccc---------c-cCCCceEEEecCCCcCcc
Confidence 478999999999999999999975333 67777777777765441000 0 000157899999999753
No 210
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.59 E-value=1.1e-07 Score=84.57 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
.+|+++|.+|||||||++.|+..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999874
No 211
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.56 E-value=2.1e-07 Score=91.21 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHcC
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
.+||+|+||||||||+|+|+|.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999994
No 212
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=98.49 E-value=1.9e-07 Score=69.65 Aligned_cols=60 Identities=28% Similarity=0.352 Sum_probs=49.6
Q ss_pred CEEEEeCCCCceEEEeecCCCCHHHhhhhhhcchhcccEEEEEecccccccccChhhHhhcCceeecCCCeeeeCCCEEE
Q psy2401 279 LRTYFTVGKKEIRAWTIPNGTTAEQAAGIIHTDIKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDGDILN 358 (363)
Q Consensus 279 li~~ft~g~~e~raw~~~~g~ta~~~A~~IHsD~~~gfi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdii~ 358 (363)
-|.+|| |+. ....+++|+|+.|+|..||+++.+.++.|.|- |+ +.+.+|.+++||+|+
T Consensus 7 ~i~v~t--P~G-~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVN-----------------G~--~v~L~~~L~~gd~Ve 64 (78)
T 3hvz_A 7 EVFVFT--PKG-DVISLPIGSTVIDFAYAIHSAVGNRMIGAKVD-----------------GR--IVPIDYKVKTGEIID 64 (78)
T ss_dssp EEEEEC--TTS-CEEEEETTCBHHHHHHHHCHHHHHTEEEEEET-----------------TE--EECTTCBCCTTCBEE
T ss_pred eEEEEC--CCC-CEEEecCCCCHHHHHHHhhhhhhcceEEEEEC-----------------CE--EcCCCcccCCCCEEE
Confidence 366777 342 66789999999999999999999999999852 43 338999999999998
Q ss_pred EE
Q psy2401 359 FL 360 (363)
Q Consensus 359 ~~ 360 (363)
|-
T Consensus 65 Ii 66 (78)
T 3hvz_A 65 VL 66 (78)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 213
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.90 E-value=8.7e-06 Score=73.59 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=32.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.++|.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G-----------l~~p~~G~I~~~g~ 67 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC-----------LDKPTEGEVYIDNI 67 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT-----------SSCCSEEEEEETTE
T ss_pred CEEEEECCCCCcHHHHHHHHhc-----------CCCCCceEEEECCE
Confidence 4589999999999999999999 66788999999884
No 214
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.89 E-value=1.3e-05 Score=79.22 Aligned_cols=70 Identities=17% Similarity=0.172 Sum_probs=43.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHcC---------------CccccCCCceeecceeEEEEeCCccccccccccccccccceeE
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKL---------------KISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPAII 68 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~---------------~~~~~~~p~~t~~~~~g~v~~~~~~~~~l~~~~~~~~~~~~~i 68 (363)
-|+|+|++++|||||+|.|.+. ....-....+|...+.|...+..+-... .|.+ -..++
T Consensus 69 vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~-----~~~~-~~~~v 142 (447)
T 3q5d_A 69 AVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLIN-----KPDG-KKVAV 142 (447)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEE-----CSSS-CEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccc-----cCCC-CcceE
Confidence 3789999999999999999863 1111122235666677877664310000 0000 11579
Q ss_pred EEEeeecccCC
Q psy2401 69 KLVDIAGLVSG 79 (363)
Q Consensus 69 ~lvDtpGl~~~ 79 (363)
.++||||+.+.
T Consensus 143 vllDTeG~~~~ 153 (447)
T 3q5d_A 143 LLMDTQGTFDS 153 (447)
T ss_dssp EEEEEECCCSS
T ss_pred EEEcCCccccc
Confidence 99999998653
No 215
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.86 E-value=1.2e-05 Score=72.11 Aligned_cols=36 Identities=31% Similarity=0.316 Sum_probs=32.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.++|.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~g~ 66 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL-----------LDAPTEGKVFLEGK 66 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT-----------SSCCSEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCCCceEEEECCE
Confidence 3589999999999999999999 66788999999884
No 216
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.84 E-value=1.1e-05 Score=73.07 Aligned_cols=36 Identities=22% Similarity=0.506 Sum_probs=32.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
.++|+|+||||||||+++|+| ...|..|.+.++|..
T Consensus 26 ~~~liG~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~g~~ 61 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAG-----------IVKPDRGEVRLNGAD 61 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHT-----------SSCCSEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhC-----------CCCCCceEEEECCEE
Confidence 479999999999999999999 667889999998843
No 217
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.81 E-value=1.2e-05 Score=74.04 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=32.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
-.+||+|+||||||||+++|+| ...|..|.+.++|..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G-----------l~~p~~G~I~~~g~~ 74 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG-----------YLSPSHGECHLLGQN 74 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS-----------SSCCSSCEEEETTEE
T ss_pred CEEEEECCCCCcHHHHHHHHhc-----------CCCCCCcEEEECCEE
Confidence 4689999999999999999999 667888999998853
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.80 E-value=1.3e-05 Score=80.37 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHH
Q psy2401 3 LKCGLIGLPNVGKSTLFNALT 23 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt 23 (363)
..|+++|++||||||+++.|+
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999999
No 219
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.80 E-value=1.6e-05 Score=72.82 Aligned_cols=36 Identities=31% Similarity=0.351 Sum_probs=32.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.++|.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G-----------l~~p~~G~i~~~g~ 69 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG-----------FLKADEGRVYFENK 69 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT-----------SSCCSEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCCcEEEECCE
Confidence 4589999999999999999999 66788999999884
No 220
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.79 E-value=1.6e-05 Score=72.98 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=32.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.++|.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G-----------l~~p~~G~i~~~g~ 68 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF-----------LEKPSEGAIIVNGQ 68 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT-----------SSCCSEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCCCCcEEEECCE
Confidence 3589999999999999999999 66788999999884
No 221
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.79 E-value=6.5e-06 Score=77.44 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
..++|+|+||||||||+|+|++.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 46899999999999999999984
No 222
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.79 E-value=1.5e-05 Score=70.95 Aligned_cols=36 Identities=22% Similarity=0.318 Sum_probs=32.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.++|.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G-----------l~~p~~G~I~~~g~ 71 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST-----------YLKPLKGEIIYNGV 71 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT-----------SSCCSEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCCCCeEEEECCE
Confidence 3589999999999999999999 56788999999884
No 223
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.78 E-value=1.7e-05 Score=71.82 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=32.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||++.|+| ...|..|.+.++|.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~g~ 68 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG-----------LVRAQKGKIIFNGQ 68 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT-----------SSCCSEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCCceEEECCE
Confidence 4689999999999999999999 66788999999884
No 224
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.78 E-value=1.7e-05 Score=73.41 Aligned_cols=36 Identities=33% Similarity=0.499 Sum_probs=32.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.++|.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G-----------l~~p~~G~I~~~G~ 70 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG-----------ILKPSSGRILFDNK 70 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT-----------SSCCSEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHHc-----------CCCCCCeEEEECCE
Confidence 3589999999999999999999 66788999999884
No 225
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.78 E-value=1.8e-05 Score=71.13 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=31.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPD 48 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~ 48 (363)
-.++|+|+||||||||+++|+| ...|..|.+.+++
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~g 69 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMG-----------ELEPSEGKIKHSG 69 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT-----------SSCCSEEEEEECS
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCcCCccEEEECC
Confidence 4689999999999999999999 6678899999877
No 226
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.77 E-value=1.8e-05 Score=72.00 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=32.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
-.++|+|+||||||||+++|+| ...|..|.+.++|..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G-----------l~~p~~G~I~i~g~~ 72 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR-----------FYIPENGQVLIDGHD 72 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT-----------SSCCSEEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCCCCcEEEECCEE
Confidence 4689999999999999999999 667889999998853
No 227
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.77 E-value=1.9e-05 Score=72.64 Aligned_cols=36 Identities=25% Similarity=0.222 Sum_probs=32.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.++|.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G-----------l~~p~~G~I~~~g~ 86 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL-----------LEDFDEGEIIIDGI 86 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT-----------SSCCSEEEEEETTE
T ss_pred CEEEEEcCCCCcHHHHHHHHHc-----------CCCCCCcEEEECCE
Confidence 4689999999999999999999 66788999999884
No 228
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.76 E-value=1.8e-05 Score=71.53 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=31.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPD 48 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~ 48 (363)
-.++|+|+||||||||+++|+| ...|..|.+.++|
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G-----------l~~p~~G~I~~~g 66 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLA-----------EMDKVEGHVAIKG 66 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT-----------CSEEEEEEEEECS
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCCCCceEEECC
Confidence 4689999999999999999999 6678899999877
No 229
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.75 E-value=1.4e-05 Score=74.80 Aligned_cols=61 Identities=21% Similarity=0.303 Sum_probs=32.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEe---CCccccccccccccccccceeEEEEeeecccC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEV---PDKRLKHLNNIVKTKKIFPAIIKLVDIAGLVS 78 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~---~~~~~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 78 (363)
..++++|+||||||||+|+|++ ...|..|.+.+ .|..+.......... .--.++|+||+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g-----------~~~~~~G~i~~~~~~g~~~t~~~~~~~~~----~~g~v~q~p~~~~ 233 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINP-----------GLKLRVSEVSEKLQRGRHTTTTAQLLKFD----FGGYVVDTPGFAN 233 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHST-----------TCCCC-------------CCCSCCEEECT----TSCEEESSCSSTT
T ss_pred CeEEEECCCCCcHHHHHHHhcc-----------cccccccceecccCCCCCceeeeEEEEcC----CCCEEEECcCCCc
Confidence 4689999999999999999998 33455565555 343221111111000 1236889999754
No 230
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.75 E-value=2.1e-05 Score=72.04 Aligned_cols=36 Identities=36% Similarity=0.541 Sum_probs=32.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.++|.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G-----------l~~p~~G~I~~~g~ 77 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST-----------LIKPSSGIVTVFGK 77 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT-----------SSCCSEEEEEETTE
T ss_pred cEEEEECCCCCCHHHHHHHHhc-----------CCCCCceEEEECCE
Confidence 3689999999999999999999 66788999999884
No 231
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.74 E-value=2.1e-05 Score=72.90 Aligned_cols=36 Identities=33% Similarity=0.365 Sum_probs=32.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.++|.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G-----------l~~p~~G~I~~~g~ 83 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA-----------YEPATSGTVNLFGK 83 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT-----------SSCCSEEEEEETTB
T ss_pred CEEEEECCCCCcHHHHHHHHhC-----------CCCCCCeEEEECCE
Confidence 4689999999999999999999 66788999999884
No 232
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.72 E-value=2.5e-05 Score=71.88 Aligned_cols=36 Identities=28% Similarity=0.275 Sum_probs=32.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.++|.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G-----------l~~p~~G~I~~~g~ 69 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG-----------LIEPTSGDVLYDGE 69 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT-----------SSCCSEEEEEETTE
T ss_pred CEEEEECCCCCcHHHHHHHHhC-----------CCCCCCcEEEECCE
Confidence 3689999999999999999999 66788999999884
No 233
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.71 E-value=2.6e-05 Score=72.01 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=32.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
-.++|+|+||||||||+++|+| ...|..|.+.++|..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G-----------l~~p~~G~I~~~g~~ 82 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN-----------LYQPTGGKVLLDGEP 82 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT-----------SSCCSEEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCCCCCEEEECCEE
Confidence 4689999999999999999999 667889999998854
No 234
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.70 E-value=2.1e-05 Score=73.94 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=33.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRL 51 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~ 51 (363)
-.++|+|++|||||||++.|+| ...|..|.+.++|..+
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g-----------l~~p~~G~I~i~G~~i 118 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR-----------FYDISSGCIRIDGQDI 118 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT-----------SSCCSEEEEEETTEET
T ss_pred CEEEEECCCCchHHHHHHHHHc-----------CCCCCCcEEEECCEEc
Confidence 4799999999999999999999 6778999999998543
No 235
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.70 E-value=2.8e-05 Score=70.86 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=31.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
-.++|+|+||||||||+++|+| ...|. |.+.++|..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G-----------l~~p~-G~i~~~g~~ 62 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG-----------MTSGK-GSIQFAGQP 62 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT-----------SSCCE-EEEEETTEE
T ss_pred CEEEEECCCCCcHHHHHHHHhC-----------CCCCC-eEEEECCEE
Confidence 4689999999999999999999 66788 999998853
No 236
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.69 E-value=2.7e-05 Score=74.83 Aligned_cols=36 Identities=31% Similarity=0.429 Sum_probs=32.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
--+||+|+||||||||+++|+| ...|..|.+.++|.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~G-----------L~~p~~G~I~i~G~ 90 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNL-----------LERPTEGSVLVDGQ 90 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT-----------SSCCSEEEEEETTE
T ss_pred CEEEEEcCCCchHHHHHHHHhc-----------CCCCCceEEEECCE
Confidence 3589999999999999999999 66788999999985
No 237
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.69 E-value=8.4e-05 Score=71.20 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=28.3
Q ss_pred eeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 66 AIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 66 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
..+.+|||+|...... ......++++++|+|+|+++
T Consensus 193 ~~l~iwDt~GQe~~r~-------~w~~yf~~a~~iIfV~dls~ 228 (353)
T 1cip_A 193 LHFKMFDVGGQRSERK-------KWIHCFEGVTAIIFCVALSD 228 (353)
T ss_dssp EEEEEEEECCSGGGGG-------GGGGGCTTCSEEEEEEEGGG
T ss_pred eeEEEEeCCCchhhhH-------HHHHHHhcCCEEEEEEECcc
Confidence 6799999999765443 33456789999999999975
No 238
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.69 E-value=1.8e-05 Score=71.74 Aligned_cols=37 Identities=27% Similarity=0.414 Sum_probs=32.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
-.++|+|+||||||||+++|+| ...|..|.+.++|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~g~~ 65 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER-----------FYQPTAGEITIDGQP 65 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT-----------SSCCSBSCEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCCCCcEEEECCEE
Confidence 3689999999999999999999 566888999998853
No 239
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.67 E-value=3.3e-05 Score=70.41 Aligned_cols=38 Identities=26% Similarity=0.183 Sum_probs=31.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||++.|+|-. ...|..|.+.++|.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl~---------~~~p~~G~I~~~g~ 67 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGDP---------EYTVERGEILLDGE 67 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTCT---------TCEEEEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---------CCCCCceEEEECCE
Confidence 468999999999999999999920 04578899999884
No 240
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.64 E-value=2.6e-05 Score=74.80 Aligned_cols=23 Identities=43% Similarity=0.479 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
..++|+|+||||||||+|+|++.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 46899999999999999999985
No 241
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.62 E-value=4.3e-05 Score=70.26 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=31.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| .. |..|.+.+++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G-----------l~-p~~G~I~~~g~ 65 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG-----------LL-PYSGNIFINGM 65 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT-----------SS-CCEEEEEETTE
T ss_pred EEEEEECCCCCCHHHHHHHHhC-----------CC-CCCcEEEECCE
Confidence 3689999999999999999999 66 88999999884
No 242
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.60 E-value=4.3e-05 Score=71.22 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=31.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPD 48 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~ 48 (363)
-.++|+|+||||||||+++|+| ...|..|.+.+++
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~G-----------l~~p~~G~I~~~g 99 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMG-----------ELEPSEGKIKHSG 99 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTT-----------SSCEEEEEEECCS
T ss_pred CEEEEECCCCCcHHHHHHHHhc-----------CCCCCCcEEEECC
Confidence 4689999999999999999999 6678899998876
No 243
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.59 E-value=4.7e-05 Score=73.58 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=32.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
--++|+|+||||||||+++|+| ...|..|.+.++|..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG-----------l~~p~~G~I~i~G~~ 66 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG-----------LETITSGDLFIGEKR 66 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT-----------SSCCSEEEEEETTEE
T ss_pred CEEEEEcCCCchHHHHHHHHHc-----------CCCCCCeEEEECCEE
Confidence 3589999999999999999999 667889999999853
No 244
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.59 E-value=4.7e-05 Score=73.10 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=32.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
--++|+|+||||||||+++|+| ...|..|.+.++|..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG-----------l~~p~~G~I~i~g~~ 66 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAG-----------IYKPTSGEIYFDDVL 66 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT-----------SSCCSEEEEEETTEE
T ss_pred CEEEEEcCCCchHHHHHHHHHC-----------CCCCCccEEEECCEE
Confidence 3589999999999999999999 667889999999853
No 245
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.59 E-value=5.2e-05 Score=69.80 Aligned_cols=38 Identities=29% Similarity=0.299 Sum_probs=31.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||++.|+|-. ...|..|.+.++|.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl~---------~~~p~~G~I~~~g~ 84 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGRE---------DYEVTGGTVEFKGK 84 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTCT---------TCEEEEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---------CCCCCCeEEEECCE
Confidence 468999999999999999999920 02477899999884
No 246
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.59 E-value=5e-05 Score=77.99 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHcC
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
.+||+|++|||||||+++|+|.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSC
T ss_pred eEEEECCCCChHHHHHHHHhCC
Confidence 5899999999999999999995
No 247
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.58 E-value=4.6e-05 Score=73.08 Aligned_cols=37 Identities=30% Similarity=0.395 Sum_probs=33.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
--++|+|+||||||||+++|+| ...|..|.+.++|..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG-----------l~~p~~G~I~i~G~~ 67 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG-----------FEQPDSGEISLSGKT 67 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT-----------SSCCSEEEEEETTEE
T ss_pred CEEEEECCCCchHHHHHHHHhc-----------CCCCCCcEEEECCEE
Confidence 3589999999999999999999 677899999999853
No 248
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.58 E-value=0.00022 Score=70.12 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..|+++|++||||||++..|+.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHH
Confidence 4689999999999999999983
No 249
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.57 E-value=5.3e-05 Score=72.79 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=32.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
--++|+|+||||||||+++|+| ...|..|.+.++|..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG-----------l~~p~~G~I~i~g~~ 66 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAG-----------IYKPTSGKIYFDEKD 66 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT-----------SSCCSEEEEEETTEE
T ss_pred CEEEEECCCCchHHHHHHHHhc-----------CCCCCceEEEECCEE
Confidence 3589999999999999999999 667889999998843
No 250
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.54 E-value=6.7e-05 Score=72.38 Aligned_cols=38 Identities=26% Similarity=0.311 Sum_probs=33.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRL 51 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~ 51 (363)
-.++|+|+||||||||+++|+| ...|..|.+.++|..+
T Consensus 38 e~~~llGpnGsGKSTLLr~iaG-----------l~~p~~G~I~i~g~~i 75 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAG-----------LEEPTEGRIYFGDRDV 75 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT-----------SSCCSEEEEEETTEEC
T ss_pred CEEEEECCCCChHHHHHHHHHc-----------CCCCCceEEEECCEEC
Confidence 3589999999999999999999 6678899999998643
No 251
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.53 E-value=5.8e-05 Score=72.33 Aligned_cols=37 Identities=27% Similarity=0.423 Sum_probs=32.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
--++|+|+||||||||+++|+| ...|..|.+.++|..
T Consensus 42 e~~~llGpnGsGKSTLLr~iaG-----------l~~p~~G~I~i~g~~ 78 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAG-----------LERPTKGDVWIGGKR 78 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT-----------SSCCSEEEEEETTEE
T ss_pred CEEEEECCCCCcHHHHHHHHhC-----------CCCCCccEEEECCEE
Confidence 3589999999999999999999 667889999998843
No 252
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.53 E-value=6.7e-05 Score=68.75 Aligned_cols=36 Identities=31% Similarity=0.482 Sum_probs=30.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
-.++|+|+||||||||+++|+| ...| .|.+.++|..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G-----------l~~~-~G~I~i~g~~ 82 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR-----------FYDA-EGDIKIGGKN 82 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT-----------SSCC-EEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------cCCC-CeEEEECCEE
Confidence 4689999999999999999999 3445 6999998853
No 253
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.51 E-value=4.9e-05 Score=74.84 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..|+++|++||||||+++.|++
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 254
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.50 E-value=6.7e-05 Score=72.39 Aligned_cols=36 Identities=31% Similarity=0.352 Sum_probs=32.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
--++|+|+||||||||+++|+| ...|..|.+.++|.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG-----------l~~p~~G~I~i~g~ 65 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAG-----------LEEPSRGQIYIGDK 65 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT-----------SSCCSEEEEEETTE
T ss_pred CEEEEECCCCcHHHHHHHHHHc-----------CCCCCccEEEECCE
Confidence 3589999999999999999999 66788999999984
No 255
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.50 E-value=4.5e-05 Score=65.83 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
++++|+|+||||||||++.|++.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999984
No 256
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.50 E-value=5.4e-05 Score=72.37 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=32.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
--++|+|+||||||||+++|+| ...|..|.+.++|.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaG-----------l~~p~~G~I~~~g~ 62 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAG-----------FHVPDSGRILLDGK 62 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHT-----------SSCCSEEEEEETTE
T ss_pred CEEEEECCCCccHHHHHHHHHc-----------CCCCCCcEEEECCE
Confidence 3589999999999999999999 66788999999884
No 257
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.45 E-value=3.6e-05 Score=67.65 Aligned_cols=41 Identities=29% Similarity=0.286 Sum_probs=32.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCc--cccCCCceeecceeEE
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKI--SAENYPFCTIEPNIGI 43 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~--~~~~~p~~t~~~~~g~ 43 (363)
.-++|+||+|||||||+++|.+... .....+.||..|..|.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE 62 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE 62 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe
Confidence 4689999999999999999997532 2445667888887765
No 258
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.44 E-value=3.3e-05 Score=65.48 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=27.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
.++|+|++|||||||++.|++ .. |..|.+.+++.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g-----------~l-~~~G~V~~~g~ 68 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQ-----------GI-GHQGNVKSPTY 68 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-----------HT-TCCSCCCCCTT
T ss_pred EEEEECCCCCCHHHHHHHHHH-----------hC-CCCCeEEECCE
Confidence 589999999999999999998 33 55566666553
No 259
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.44 E-value=8.9e-05 Score=67.66 Aligned_cols=32 Identities=34% Similarity=0.394 Sum_probs=27.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEE
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIE 45 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~ 45 (363)
-.++|+|+||||||||++.|+| ...|..|.+.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G-----------l~~p~~G~I~ 63 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG-----------IHRPIQGKIE 63 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT-----------SSCCSEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCCcEEE
Confidence 4689999999999999999999 5567778776
No 260
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.43 E-value=6.6e-05 Score=71.92 Aligned_cols=36 Identities=22% Similarity=0.440 Sum_probs=32.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
-.++|+|+||||||||+++|+| ...|..|.+.++|.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaG-----------l~~p~~G~I~i~g~ 67 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAG-----------LDVPSTGELYFDDR 67 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT-----------SSCCSEEEEEETTE
T ss_pred CEEEEECCCCCcHHHHHHHHhC-----------CCCCCceEEEECCE
Confidence 3589999999999999999999 66788999999984
No 261
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.42 E-value=0.00026 Score=67.98 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=24.5
Q ss_pred eeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 66 AIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 66 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
..+.+|||+|.......+ ....++++++|+|+|+++
T Consensus 201 ~~l~i~Dt~Gq~~~r~~w-------~~~f~~~~~iIfv~dls~ 236 (362)
T 1zcb_A 201 VPFKMVDVGGQRSERKRW-------FECFDSVTSILFLVSSSE 236 (362)
T ss_dssp EEEEEEEECC-------C-------TTSCTTCCEEEEEEETTC
T ss_pred eEEEEEeccchhhhhhhH-------HHHhCCCCEEEEEEECcc
Confidence 679999999986554433 355689999999999975
No 262
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.40 E-value=0.00012 Score=68.58 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
..++++|+||||||||+|+|+ .
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-S
T ss_pred cEEEEECCCCCCHHHHHHHHH-H
Confidence 468999999999999999999 5
No 263
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.39 E-value=8.9e-05 Score=63.69 Aligned_cols=41 Identities=24% Similarity=0.236 Sum_probs=27.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCc--cccCCCceeecceeE
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKI--SAENYPFCTIEPNIG 42 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~--~~~~~p~~t~~~~~g 42 (363)
+..++|+|++|||||||++.|.+... .....+.+|..|..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~g 47 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKD 47 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCcc
Confidence 46799999999999999999997421 122334555555544
No 264
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.38 E-value=0.00017 Score=68.40 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
.-++++|+|||||||+++.|++
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999997
No 265
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.35 E-value=0.0001 Score=73.32 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..++|+|+||||||||++.|++
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHH
Confidence 4689999999999999999987
No 266
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.31 E-value=0.00017 Score=67.38 Aligned_cols=79 Identities=19% Similarity=0.106 Sum_probs=50.5
Q ss_pred ccccEEEeccccccCCCchHHHHHHHHHHhcCC--CcEEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHHH
Q psy2401 198 TIKPIIFVANVKENGFKNNLLLDQLKIYAHNQN--IPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFS 275 (363)
Q Consensus 198 ~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~--~~~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~~ 275 (363)
..+|+++|+||.|+. +....+++++++...+ .+++++||+...++.++......+++.-.|-.+.|--.+++.+..
T Consensus 114 ~~~piilv~NK~DL~--~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 114 NELETVMVINKMDLY--DEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp TTCEEEEEECCGGGC--CHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSSEEEEECSTTSSHHHHHHHHST
T ss_pred CCCCEEEEEeHHHcC--CchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCCeEEEECCCCCcHHHHHHHhcc
Confidence 367999999999964 2222233445544444 789999999887777664433333333455566777777776655
Q ss_pred hCC
Q psy2401 276 LLD 278 (363)
Q Consensus 276 ~l~ 278 (363)
.+.
T Consensus 192 ~~~ 194 (301)
T 1u0l_A 192 GLK 194 (301)
T ss_dssp TCC
T ss_pred ccc
Confidence 443
No 267
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.31 E-value=0.00025 Score=67.08 Aligned_cols=36 Identities=17% Similarity=0.382 Sum_probs=28.1
Q ss_pred eeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 66 AIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 66 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
..+++|||+|...... ......++++++++|+|.++
T Consensus 167 v~l~iwDtgGQe~~R~-------~w~~yf~~~~~iIfV~dls~ 202 (327)
T 3ohm_A 167 VIFRMVDVGGQRSERR-------KWIHCFENVTSIMFLVALSE 202 (327)
T ss_dssp EEEEEEEECCSHHHHT-------TGGGGCSSCSEEEEEEEGGG
T ss_pred eeeEEEEcCCchhHHH-------HHHHHhCCCCEEEEEEECcc
Confidence 6789999999755443 33466799999999999864
No 268
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.29 E-value=0.00018 Score=73.47 Aligned_cols=38 Identities=26% Similarity=0.353 Sum_probs=33.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRL 51 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~ 51 (363)
-.++|+|++|||||||++.|+| ..+|..|.+.++|.++
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g-----------~~~p~~G~i~~~g~~~ 407 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITR-----------FYDIDEGHILMDGHDL 407 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTT-----------TTCCSEEEEEETTEET
T ss_pred CEEEEECCCCCCHHHHHHHHhh-----------ccCCCCCeEEECCEEc
Confidence 5799999999999999999999 6678899999998543
No 269
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.28 E-value=6.8e-05 Score=64.33 Aligned_cols=37 Identities=19% Similarity=0.443 Sum_probs=28.1
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecce---eEEEEeCC
Q psy2401 1 MNLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPN---IGIIEVPD 48 (363)
Q Consensus 1 m~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~---~g~v~~~~ 48 (363)
|...++|+|++|||||||++.|.+ -..|. .|.+.+++
T Consensus 1 m~~~v~IvG~SGsGKSTL~~~L~~-----------~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 1 MSLILSIVGTSDSGKTTLITRMMP-----------ILRERGLRVAVVKRHA 40 (171)
T ss_dssp --CEEEEEESCHHHHHHHHHHHHH-----------HHHHTTCCEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-----------HhhhcCCceEEEEEcC
Confidence 556899999999999999999998 33444 68888877
No 270
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.25 E-value=0.0005 Score=63.69 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=35.6
Q ss_pred ccccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHHHHhcC
Q psy2401 198 TIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEEEISDL 247 (363)
Q Consensus 198 ~~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~~i~el 247 (363)
..||.++++||+|.. +.+..+...+++++.+.+++++||+....+.++
T Consensus 49 ~~kp~ilVlNK~DL~--~~~~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L 96 (282)
T 1puj_A 49 KNKPRIMLLNKADKA--DAAVTQQWKEHFENQGIRSLSINSVNGQGLNQI 96 (282)
T ss_dssp SSSCEEEEEECGGGS--CHHHHHHHHHHHHTTTCCEEECCTTTCTTGGGH
T ss_pred CCCCEEEEEECcccC--CHHHHHHHHHHHHhcCCcEEEEECCCcccHHHH
Confidence 689999999999963 344444555556666789999999977666655
No 271
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.24 E-value=0.00016 Score=73.99 Aligned_cols=38 Identities=26% Similarity=0.453 Sum_probs=33.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRL 51 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~ 51 (363)
-.++|+|++|||||||++.|+| ..+|..|.+.++|.++
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g-----------~~~p~~G~i~~~g~~i 408 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLR-----------LYDPASGTISLDGHDI 408 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTT-----------SSCCSEEEEEETTEET
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CcCCCCcEEEECCEEh
Confidence 5799999999999999999999 6678999999998543
No 272
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.21 E-value=0.00019 Score=73.27 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=33.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
-.++|+|++|||||||++.|+| ..+|..|.+.++|.+
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g-----------~~~p~~G~i~~~g~~ 406 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTR-----------FYDVDSGSICLDGHD 406 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CCCCCCCEEEECCEE
Confidence 4799999999999999999999 667889999998854
No 273
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.20 E-value=0.00021 Score=73.22 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=34.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRL 51 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~ 51 (363)
-.++|+|++|||||||++.|+| ..+|..|.+.++|..+
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g-----------~~~p~~G~i~~~g~~i 419 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMR-----------FYDVDRGQILVDGIDI 419 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTT-----------SSCCSEEEEEETTEEG
T ss_pred CEEEEECCCCCcHHHHHHHHhc-----------CcCCCCeEEEECCEEh
Confidence 4799999999999999999999 6778999999999644
No 274
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.19 E-value=0.00016 Score=61.05 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=21.9
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 1 MNLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 1 m~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
|+..|+|+|+|||||||+.+.|.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 275
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.19 E-value=0.00017 Score=73.62 Aligned_cols=38 Identities=24% Similarity=0.407 Sum_probs=33.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRL 51 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~ 51 (363)
-.++|+|++|||||||++.|+| ..+|..|.+.++|.++
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g-----------~~~p~~G~i~~~g~~~ 405 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPR-----------FYDVTSGQILIDGHNI 405 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTT-----------SSCCSEEEEEETTEEG
T ss_pred CEEEEECCCCChHHHHHHHHhc-----------CCCCCCcEEEECCEEh
Confidence 4799999999999999999999 6678999999999643
No 276
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.19 E-value=0.00033 Score=67.89 Aligned_cols=37 Identities=30% Similarity=0.499 Sum_probs=31.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRL 51 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~ 51 (363)
-.++|+|++|||||||+++|+| ... ..|.+.++|..+
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG-----------l~~-~~G~I~i~G~~i 84 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR-----------LLN-TEGEIQIDGVSW 84 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT-----------CSE-EEEEEEESSCBT
T ss_pred CEEEEECCCCChHHHHHHHHhC-----------CCC-CCeEEEECCEEC
Confidence 3589999999999999999998 333 579999998644
No 277
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.19 E-value=0.00026 Score=60.75 Aligned_cols=22 Identities=41% Similarity=0.404 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..++|+|+||||||||++.|++
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999998
No 278
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.16 E-value=0.00016 Score=63.18 Aligned_cols=23 Identities=35% Similarity=0.330 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
..++|+|++|||||||++.|++.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57999999999999999999974
No 279
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.16 E-value=0.0012 Score=64.15 Aligned_cols=36 Identities=14% Similarity=0.317 Sum_probs=28.3
Q ss_pred eeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 66 AIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 66 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
..+++|||+|...... ......++++++|+|+|.++
T Consensus 217 v~l~iwDtaGQe~~r~-------~w~~yf~~a~~iIfV~dis~ 252 (402)
T 1azs_C 217 VNFHMFDVGGQRDERR-------KWIQCFNDVTAIIFVVASSS 252 (402)
T ss_dssp EEEEEEEECCSGGGGG-------GGGGGTTTCCEEEEEEETTG
T ss_pred ccceecccchhhhhhh-------hhHhhccCCCEEEEEEECcc
Confidence 6799999999765444 33456689999999999964
No 280
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.15 E-value=0.00025 Score=72.50 Aligned_cols=38 Identities=32% Similarity=0.524 Sum_probs=34.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRL 51 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~ 51 (363)
-.++|+|++|||||||++.|+| ..+|..|.+.++|.++
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g-----------~~~~~~G~i~i~g~~i 407 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPR-----------LIDPERGRVEVDELDV 407 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTT-----------SSCCSEEEEEESSSBG
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CccCCCcEEEECCEEc
Confidence 5799999999999999999999 6678999999999654
No 281
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.15 E-value=0.00018 Score=63.17 Aligned_cols=22 Identities=45% Similarity=0.537 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..++|+|+||||||||++.|++
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999998
No 282
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.15 E-value=0.0002 Score=62.15 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
.-++|+|+||||||||++.|++.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 56899999999999999999984
No 283
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.14 E-value=0.0002 Score=62.84 Aligned_cols=23 Identities=35% Similarity=0.332 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
.-++|+|+||||||||+++|+|.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999999983
No 284
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.13 E-value=0.0002 Score=67.96 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=30.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
..++|+|++|||||||+++|++ ...|..|.+.++|.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g-----------~~~~~~g~i~i~~~ 207 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIME-----------FIPKEERIISIEDT 207 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGG-----------GSCTTSCEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCcCCCcEEEECCe
Confidence 4689999999999999999999 55677788888774
No 285
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.10 E-value=0.0002 Score=61.60 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=22.1
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 1 MNLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 1 m~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
|+.-++|+|+||||||||++.|++
T Consensus 1 mg~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 1 MKKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhc
Confidence 667789999999999999999986
No 286
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.06 E-value=0.00028 Score=67.69 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=29.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPD 48 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~ 48 (363)
..++|+|++|||||||+++|++ ...|..|.+.+.|
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~-----------~~~~~~g~I~ie~ 210 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQ-----------EIPFDQRLITIED 210 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHT-----------TSCTTSCEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHh-----------cCCCCceEEEECC
Confidence 4689999999999999999998 4456677777765
No 287
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.04 E-value=0.0012 Score=63.14 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=27.4
Q ss_pred eeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 66 AIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 66 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
..+++|||+|...... ......++++++++|+|.++
T Consensus 183 v~l~iwDtaGQe~~r~-------~~~~y~~~~~~iI~v~dis~ 218 (354)
T 2xtz_A 183 EVYRLFDVGGQRNERR-------KWIHLFEGVTAVIFCAAISE 218 (354)
T ss_dssp -EEEEEEECCSTTGGG-------GTGGGCTTEEEEEEEEEGGG
T ss_pred eeeEEEECCCchhhhH-------HHHHHhCCCCEEEEEEECcc
Confidence 6799999999765444 33356689999999999863
No 288
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.01 E-value=0.00028 Score=60.82 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
.-++|+|+||||||||++.|++.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999999974
No 289
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.99 E-value=0.00036 Score=62.19 Aligned_cols=23 Identities=30% Similarity=0.247 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
.-++|+|++|||||||+++|++.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 46899999999999999999984
No 290
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.96 E-value=0.00032 Score=62.24 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..++|+|++|||||||++.|++
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999998
No 291
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.96 E-value=0.00028 Score=62.38 Aligned_cols=22 Identities=23% Similarity=0.031 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
-.++|+|+||||||||+++|+|
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999998
No 292
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.95 E-value=0.00022 Score=65.28 Aligned_cols=37 Identities=19% Similarity=0.065 Sum_probs=28.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecce-eEEEEeCCcc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPN-IGIIEVPDKR 50 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~-~g~v~~~~~~ 50 (363)
-.++|+|++|||||||+++|++ ...|. .|.+.+.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g-----------~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID-----------YINQTKSYHIITIEDP 63 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH-----------HHHHHCCCEEEEEESS
T ss_pred CEEEEECCCCccHHHHHHHHHH-----------hCCCCCCCEEEEcCCc
Confidence 3589999999999999999998 34454 5666665543
No 293
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.93 E-value=0.00019 Score=71.36 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=29.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRL 51 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~ 51 (363)
.++|+|+||||||||+++|+| ...|..|.+.+++..+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G-----------l~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT-----------ALIPDLTLLNFRNTTE 67 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH-----------HHCCCTTTCCCCCTTS
T ss_pred eEEEECCCCCcHHHHHHHHhc-----------CCCCCCCEEEECCEEc
Confidence 479999999999999999998 4456666666666443
No 294
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.93 E-value=0.00044 Score=60.25 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=22.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 1 MNLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 1 m~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
|.+.|+|+|++||||||+.+.|.+
T Consensus 1 m~~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 1 MTYIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 556899999999999999999986
No 295
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.91 E-value=0.00041 Score=60.62 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
..|||+|++|||||||++.|.+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999983
No 296
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.89 E-value=0.00056 Score=60.05 Aligned_cols=39 Identities=28% Similarity=0.145 Sum_probs=27.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCc--cccCCCceeeccee
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKI--SAENYPFCTIEPNI 41 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~--~~~~~p~~t~~~~~ 41 (363)
.-++|+||+|||||||++.|++... .....+.+|..|..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ 49 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPRE 49 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcC
Confidence 4589999999999999999997521 22333444544443
No 297
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.89 E-value=0.00068 Score=64.69 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=30.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
+-+++|+|+||||||||++.|++ ...|..|.+.+.|.+
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g-----------~~~~~~g~i~~~G~~ 108 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICN-----------GASADIIVLALIGER 108 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH-----------HSCCSEEEEEEESCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhc-----------CCCCCEEEEEEeccc
Confidence 35799999999999999999999 445667777766643
No 298
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.85 E-value=0.00055 Score=60.39 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=21.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++.|+|+|++||||||+.+.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 299
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.85 E-value=0.00046 Score=58.71 Aligned_cols=21 Identities=38% Similarity=0.328 Sum_probs=18.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
-++|+|+||||||||++++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 589999999999999998653
No 300
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.85 E-value=0.0015 Score=59.71 Aligned_cols=69 Identities=17% Similarity=0.099 Sum_probs=43.2
Q ss_pred cccEEEeccccccCCCchHHHHHHHHHHhcCCCcEEEeeHHHHHHHhcCCHHHHHHHHhh-------cCCCchhHHHHHH
Q psy2401 199 IKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEEEISDLNNIDKKFFLDN-------LGLKETKLNDLIR 271 (363)
Q Consensus 199 ~kp~i~v~Nk~d~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~e~~i~el~~~~~~~~l~~-------~~l~~~~l~~l~~ 271 (363)
.||.++++||+|+. +.+..+...+++++.+.++ ++||+....+.++ .+.+.. .|.+..|--.+++
T Consensus 46 ~k~~iivlNK~DL~--~~~~~~~~~~~~~~~g~~v-~iSa~~~~gi~~L-----~~~l~~~~~~v~~vG~~~vGKSslin 117 (262)
T 3cnl_A 46 RKETIILLNKVDIA--DEKTTKKWVEFFKKQGKRV-ITTHKGEPRKVLL-----KKLSFDRLARVLIVGVPNTGKSTIIN 117 (262)
T ss_dssp TSEEEEEEECGGGS--CHHHHHHHHHHHHHTTCCE-EECCTTSCHHHHH-----HHHCCCTTCEEEEEESTTSSHHHHHH
T ss_pred CCCcEEEEECccCC--CHHHHHHHHHHHHHcCCeE-EEECCCCcCHHHH-----HHHHHHhhhheEEeCCCCCCHHHHHH
Confidence 79999999999963 3444445555566667788 9999876555433 222222 2445566666666
Q ss_pred HHHH
Q psy2401 272 ASFS 275 (363)
Q Consensus 272 ~~~~ 275 (363)
+...
T Consensus 118 ~l~~ 121 (262)
T 3cnl_A 118 KLKG 121 (262)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 6553
No 301
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.84 E-value=0.00058 Score=69.00 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=29.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPD 48 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~ 48 (363)
-.+||+|+||||||||+++|+| ...|..|.+.+.+
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~~ 329 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVG-----------EITADEGSVTPEK 329 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT-----------SSCCSBCCEESSC
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCCcEEEECC
Confidence 4689999999999999999999 5567778877665
No 302
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.84 E-value=0.00022 Score=67.17 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHcC
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
-++|+|++|||||||+|.|.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999974
No 303
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.83 E-value=0.00049 Score=59.88 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
..++|+|+||||||||++.|++.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 46899999999999999999983
No 304
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.82 E-value=0.0006 Score=68.47 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=29.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~ 49 (363)
..++++|+||||||||+++|++ .+.|..+.+.+.|.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~-----------~i~~~~giitied~ 296 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMM-----------FIPPDAKVVSIEDT 296 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGG-----------GSCTTCCEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHHh-----------hCCCCCCEEEEcCc
Confidence 4589999999999999999998 44566777777664
No 305
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.81 E-value=0.00063 Score=59.10 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=21.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
.++|+|+|++||||||+.+.|.+
T Consensus 1 m~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 1 MKRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCcCHHHHHHHHHH
Confidence 06899999999999999999987
No 306
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.78 E-value=0.00047 Score=61.42 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=15.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHH-cC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALT-KL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt-~~ 25 (363)
.-++|+|++|||||||++.|+ +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 468999999999999999999 74
No 307
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.77 E-value=0.00052 Score=64.23 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..|||+|++|||||||++.|.+
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999998
No 308
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.76 E-value=0.00049 Score=76.70 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=34.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRL 51 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~ 51 (363)
+-+|||||++|||||||+++|.+ -.+|..|.+.++|..+
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~r-----------l~~p~~G~I~iDG~di 1143 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLER-----------FYDTLGGEIFIDGSEI 1143 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTT-----------SSCCSSSEEEETTEET
T ss_pred CCEEEEECCCCChHHHHHHHHhc-----------CccCCCCEEEECCEEh
Confidence 35899999999999999999999 7789999999999644
No 309
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.76 E-value=0.0011 Score=64.97 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..|+++|++||||||++..|+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999983
No 310
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.76 E-value=0.00064 Score=72.94 Aligned_cols=35 Identities=34% Similarity=0.483 Sum_probs=30.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPD 48 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~ 48 (363)
-.++|+|+||||||||++.|+| ...|..|.+.+.+
T Consensus 700 eivaIiGpNGSGKSTLLklLaG-----------ll~P~sG~I~~~~ 734 (986)
T 2iw3_A 700 SRIAVIGPNGAGKSTLINVLTG-----------ELLPTSGEVYTHE 734 (986)
T ss_dssp CEEEECSCCCHHHHHHHHHHTT-----------SSCCSEEEEEECT
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCceEEEEcC
Confidence 4799999999999999999999 5667889888865
No 311
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.75 E-value=0.0012 Score=61.74 Aligned_cols=78 Identities=14% Similarity=0.041 Sum_probs=51.3
Q ss_pred ccccEEEeccccccCCCchH---HHHHHHHHHhcCCCcEEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHH
Q psy2401 198 TIKPIIFVANVKENGFKNNL---LLDQLKIYAHNQNIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASF 274 (363)
Q Consensus 198 ~~kp~i~v~Nk~d~~~~~~~---~~~~i~~~~~~~~~~~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~ 274 (363)
..+|.++|+||+|+. ++. ..+.+.+++.+.+.+++++||+...++.+|.+....+...=.|-++.|--.+++.+.
T Consensus 109 ~~~~~ilV~NK~DL~--~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 109 FKVEPVIVFNKIDLL--NEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TTCEEEEEECCGGGC--CHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCEEEEEEcccCC--CccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 568999999999963 222 245556666667889999999987777655332222222224556677778888777
Q ss_pred HhCC
Q psy2401 275 SLLD 278 (363)
Q Consensus 275 ~~l~ 278 (363)
.+.
T Consensus 187 -~~~ 189 (302)
T 2yv5_A 187 -GEE 189 (302)
T ss_dssp -SCC
T ss_pred -Hhh
Confidence 543
No 312
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.74 E-value=0.00078 Score=56.90 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=22.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 1 MNLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 1 m~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
|++.|.+.|+|||||||+.+.|..
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHh
Confidence 778899999999999999999985
No 313
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.72 E-value=0.00082 Score=60.45 Aligned_cols=21 Identities=29% Similarity=0.604 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHH
Q psy2401 3 LKCGLIGLPNVGKSTLFNALT 23 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt 23 (363)
..|+|+|+||||||||++.|+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999999
No 314
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.72 E-value=0.00075 Score=58.47 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=21.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
+..++|+|++||||||+++.|.+.
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999984
No 315
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.68 E-value=0.00057 Score=63.99 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..++|+|++|||||||++.|++
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999999997
No 316
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.67 E-value=0.00079 Score=63.04 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
-.++|+|+||||||||++.|+|
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 4799999999999999999997
No 317
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.66 E-value=0.0009 Score=58.19 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..++|+|+||||||||++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999986
No 318
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.65 E-value=0.0012 Score=64.99 Aligned_cols=37 Identities=22% Similarity=0.411 Sum_probs=31.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKR 50 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~ 50 (363)
-+++|+|++|||||||++.|++ ..+|..|.+.+.|.+
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag-----------~~~~~~G~i~~~G~r 194 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMAR-----------YTRADVIVVGLIGER 194 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-----------HSCCSEEEEEEESCC
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------ccCCCeEEEEEecee
Confidence 4799999999999999999999 456778888888763
No 319
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.62 E-value=0.00072 Score=63.11 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..++++|++|+||||++..|++
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999984
No 320
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.62 E-value=0.00055 Score=64.03 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
.-++++|+|||||||+++.|++
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999998
No 321
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.62 E-value=0.0012 Score=73.27 Aligned_cols=39 Identities=21% Similarity=0.445 Sum_probs=34.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCcccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLK 52 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~ 52 (363)
-++||+|++|||||||++.|.| ..+|..|.+.++|..+.
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g-----------~~~~~~G~i~i~g~~i~ 455 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQR-----------LYDPLDGMVSIDGQDIR 455 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTT-----------SSCCSEEEEEETTEEGG
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCCCCCeEEEECCEEHH
Confidence 5799999999999999999999 66788999999886543
No 322
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.61 E-value=0.00073 Score=58.68 Aligned_cols=41 Identities=24% Similarity=0.170 Sum_probs=30.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHcCCc--cccCCCceeecceeEEE
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKLKI--SAENYPFCTIEPNIGII 44 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~~~--~~~~~p~~t~~~~~g~v 44 (363)
-|+|+||+|||||||++.|..... -.-..+.||..|..|.+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~ 45 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV 45 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc
Confidence 488999999999999999986421 22355677887776643
No 323
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.00054 Score=67.87 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=21.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
+..++|+|++|||||||++.|+|
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999999999
No 324
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.61 E-value=0.00069 Score=68.48 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHcC
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
-+||+|+||||||||+++|+|.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999994
No 325
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.59 E-value=0.0015 Score=72.79 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=35.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccccc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKH 53 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~~~ 53 (363)
+-+++|||++|||||||++.|.| -.+|..|.+.++|..+..
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~-----------~~~~~~G~I~idG~~i~~ 484 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLR-----------YYDVLKGKITIDGVDVRD 484 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTT-----------SSCCSEEEEEETTEETTT
T ss_pred CcEEEEEecCCCcHHHHHHHhcc-----------ccccccCcccCCCccchh
Confidence 35799999999999999999999 678999999999865543
No 326
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.57 E-value=0.0015 Score=72.55 Aligned_cols=38 Identities=26% Similarity=0.426 Sum_probs=34.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcCCccccCCCceeecceeEEEEeCCccc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRL 51 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~~~~~~~~p~~t~~~~~g~v~~~~~~~ 51 (363)
-++||+|++|||||||++.|.| ..+|..|.+.++|..+
T Consensus 1060 e~v~ivG~sGsGKSTl~~~l~g-----------~~~p~~G~I~i~g~~i 1097 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLER-----------FYDPMAGSVFLDGKEI 1097 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHHHTT-----------SSCCSEEEEESSSSCT
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------CcCCCCCEEEECCEEc
Confidence 5799999999999999999999 6778999999998643
No 327
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.57 E-value=0.00082 Score=67.92 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
-.+||+|+||||||||+++|+|
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~G 334 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAG 334 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999999
No 328
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=96.55 E-value=0.0028 Score=60.16 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=28.1
Q ss_pred eeEEEEeeecccCCCCcccchhhHHHhhccccCEEEEEEeccc
Q psy2401 66 AIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFK 108 (363)
Q Consensus 66 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~~ 108 (363)
..+++|||+|..... .......++++++|+|+|+++
T Consensus 161 v~l~iwDtaGQe~~R-------~~w~~yy~~a~~iIfV~diS~ 196 (340)
T 4fid_A 161 IPFHLIDVGGQRSER-------KXWVSFFSDVDCAIFVTSLAE 196 (340)
T ss_dssp CEEEEEECCSCHHHH-------HHHHTTSCSCSEEEEEEEGGG
T ss_pred eeeccccCCCccccc-------ccHHHHhccCCEEEEEEECCc
Confidence 679999999964322 345567799999999999974
No 329
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.55 E-value=0.0011 Score=57.59 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++.|+|+|++||||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999976
No 330
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.55 E-value=0.00097 Score=67.37 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
-.+||+|+||||||||+++|+|.
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999994
No 331
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.55 E-value=0.001 Score=59.82 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..|||+|++|||||||++.|.+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999987
No 332
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.53 E-value=0.001 Score=58.44 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
-++|+|+||||||||++.|++
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999997
No 333
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.53 E-value=0.001 Score=63.64 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
+.+++|+|++|||||||++.|+|
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999998
No 334
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.53 E-value=0.0011 Score=62.34 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
.-+||+|++|||||||++.|++
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHh
Confidence 4689999999999999999998
No 335
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.50 E-value=0.00091 Score=68.54 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
-.+||+|+||||||||+++|+|
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~G 404 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAG 404 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999999
No 336
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.48 E-value=0.0012 Score=58.75 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
--++|+|+||||||||++.|++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3589999999999999999984
No 337
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.0012 Score=67.71 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
-.+||+|+||||||||++.|+|.
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 46899999999999999999994
No 338
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.45 E-value=0.0014 Score=55.94 Aligned_cols=24 Identities=50% Similarity=0.645 Sum_probs=21.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 1 MNLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 1 m~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
|++.|+|+|+|||||||+.+.|..
T Consensus 1 M~~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 1 MAPKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp -CCSEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 788999999999999999999975
No 339
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.43 E-value=0.0018 Score=54.72 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=21.9
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 1 MNLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 1 m~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
|++-|.|+|++||||||+.+.|..
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999986
No 340
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.43 E-value=0.0014 Score=55.31 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..++|+|+|||||||+.+.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 341
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.37 E-value=0.0013 Score=67.30 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
-.+||+|+||||||||++.|+|.
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 46899999999999999999994
No 342
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.36 E-value=0.0039 Score=59.83 Aligned_cols=110 Identities=15% Similarity=0.230 Sum_probs=63.1
Q ss_pred ccccEEEeccccccCCCch----HHHHHHHHHHhcCCC---cEEEeeHHHHHHHhcCCHHHHHHHHhh-----cCCCchh
Q psy2401 198 TIKPIIFVANVKENGFKNN----LLLDQLKIYAHNQNI---PIIIICAKLEEEISDLNNIDKKFFLDN-----LGLKETK 265 (363)
Q Consensus 198 ~~kp~i~v~Nk~d~~~~~~----~~~~~i~~~~~~~~~---~~i~~sa~~e~~i~el~~~~~~~~l~~-----~~l~~~~ 265 (363)
..+|+++|+||.|.. .+. ...+.+++.+.+.|. +++.+||+...++.++-+.. .+++.. .|-+..|
T Consensus 97 ~~~piilV~NK~DLl-~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I-~~~~~~~~i~~vG~~nvG 174 (369)
T 3ec1_A 97 ADNPILLVGNKADLL-PRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAI-NRYREGGDVYVVGCTNVG 174 (369)
T ss_dssp TTSCEEEEEECGGGS-CTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHH-HHHHTTSCEEEECCTTSS
T ss_pred CCCCEEEEEEChhcC-CCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHH-HhhcccCcEEEEcCCCCc
Confidence 478999999999973 222 122333444556665 68999999877776653322 223332 2446677
Q ss_pred HHHHHHHHHHh------CCCEEEEeCCCCceEEEeecCCCCHHHhhhhhh
Q psy2401 266 LNDLIRASFSL------LDLRTYFTVGKKEIRAWTIPNGTTAEQAAGIIH 309 (363)
Q Consensus 266 l~~l~~~~~~~------l~li~~ft~g~~e~raw~~~~g~ta~~~A~~IH 309 (363)
--.++++++.. .-..+-++.-.....-..+..+.+..|..|.++
T Consensus 175 KStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~ 224 (369)
T 3ec1_A 175 KSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIIN 224 (369)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCC
T ss_pred hHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCc
Confidence 77777777765 222222222122233445566666667666653
No 343
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.35 E-value=0.0019 Score=54.03 Aligned_cols=22 Identities=32% Similarity=0.067 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
+.|+|.|++||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 344
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.35 E-value=0.002 Score=56.06 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=21.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
+..|+|+|++||||||+.+.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999984
No 345
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.34 E-value=0.0011 Score=63.62 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..++++|+|||||||+++.|++
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 3589999999999999999998
No 346
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.31 E-value=0.0019 Score=56.09 Aligned_cols=22 Identities=41% Similarity=0.397 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..|+|+|++|||||||.+.|.+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999987
No 347
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.28 E-value=0.0017 Score=55.28 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..++|+|+||+|||||++++++
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 348
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.28 E-value=0.002 Score=54.85 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++.|+|+|+|||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999974
No 349
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.27 E-value=0.0012 Score=64.48 Aligned_cols=21 Identities=29% Similarity=0.151 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
-++|+|+||||||||+++|++
T Consensus 169 ii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999998
No 350
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.23 E-value=0.00019 Score=64.51 Aligned_cols=20 Identities=35% Similarity=0.358 Sum_probs=18.5
Q ss_pred EEEEeCCCCcHHHHHHHHHc
Q psy2401 5 CGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 5 i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++|+|++|||||||+++|++
T Consensus 30 ~~i~GpnGsGKSTll~~i~g 49 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVT 49 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 46789999999999999998
No 351
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.23 E-value=0.0025 Score=57.67 Aligned_cols=21 Identities=33% Similarity=0.330 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHH
Q psy2401 3 LKCGLIGLPNVGKSTLFNALT 23 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt 23 (363)
..|+|+|++||||||+++.|+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999999
No 352
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.18 E-value=0.0026 Score=53.33 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.9
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 1 MNLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 1 m~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
|.+.|+|.|++||||||+.+.|..
T Consensus 1 m~~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 1 MTEPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCCCEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 667899999999999999999975
No 353
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.17 E-value=0.0026 Score=54.09 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
-.+|+|+||||||||+.+|..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999976
No 354
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.10 E-value=0.0032 Score=53.57 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=21.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 1 MNLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 1 m~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
|++.|+|.|++||||||+.+.|..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999975
No 355
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.10 E-value=0.0032 Score=53.94 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
.-++++|++|||||||++.|.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 356
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.10 E-value=0.0028 Score=55.14 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=21.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
++-|+|+|++|||||||.+.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999863
No 357
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.08 E-value=0.0032 Score=53.53 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
+.|.|.|+|||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 358
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.08 E-value=0.0018 Score=62.33 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
-.++|+|+||||||||+++|++
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999998
No 359
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.07 E-value=0.0024 Score=61.06 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
.++++|++|||||||+++|++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999998
No 360
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.07 E-value=0.0032 Score=52.40 Aligned_cols=20 Identities=30% Similarity=0.409 Sum_probs=18.8
Q ss_pred cEEEEEeCCCCcHHHHHHHH
Q psy2401 3 LKCGLIGLPNVGKSTLFNAL 22 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~L 22 (363)
+-|+|.|+|||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 56899999999999999999
No 361
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.07 E-value=0.0034 Score=53.38 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=20.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
+..|.|+|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 362
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.05 E-value=0.0035 Score=53.50 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=20.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++.|.++|+|||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999975
No 363
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.05 E-value=0.0031 Score=53.36 Aligned_cols=22 Identities=45% Similarity=0.495 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++|.|+|+|||||||+.+.|..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999975
No 364
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.03 E-value=0.0034 Score=54.88 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
|+|+|.|+|||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999965
No 365
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.02 E-value=0.0036 Score=54.22 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..|+|+|+|||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 366
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.01 E-value=0.0032 Score=54.03 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=21.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++.|+|.|+|||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 367
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.01 E-value=0.0033 Score=54.65 Aligned_cols=22 Identities=45% Similarity=0.649 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..++|+|++|||||||++.|.+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999986
No 368
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.00 E-value=0.0035 Score=54.82 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
|+|+|.|+|||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999975
No 369
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.0033 Score=64.37 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=20.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHcC
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
.+||+|+||||||||+++|+|.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4899999999999999999993
No 370
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.99 E-value=0.0038 Score=53.71 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
+.|+|+|.+||||||+.+.|..
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHHHH
Confidence 4799999999999999999986
No 371
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.99 E-value=0.0037 Score=53.29 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++.|+|.|+|||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999999999975
No 372
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.97 E-value=0.0025 Score=53.02 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..++|+|++|+|||||++++.+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999998
No 373
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.96 E-value=0.0042 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=21.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++.|+|.|+|||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 374
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.95 E-value=0.0043 Score=53.66 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=21.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++.|+|+|+|||||||+.+.|..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999975
No 375
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.92 E-value=0.0032 Score=57.86 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
-++|+|+||+|||||+++|++
T Consensus 46 GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 389999999999999999998
No 376
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.91 E-value=0.0037 Score=58.90 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
+-|||+|++|||||||+++|.+
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 377
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.90 E-value=0.0043 Score=53.65 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=21.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++.|+|.|+|||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 378
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.89 E-value=0.0049 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.205 Sum_probs=21.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++.|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 379
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.88 E-value=0.0049 Score=53.14 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=21.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++.|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999999986
No 380
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.87 E-value=0.0029 Score=56.33 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
.-|+|.|++|||||||++.|.+
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGG
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5689999999999999999998
No 381
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.84 E-value=0.004 Score=56.51 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=21.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
+..|+|+|++||||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 382
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.82 E-value=0.0046 Score=51.39 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=17.7
Q ss_pred EEEEeCCCCcHHHHHHHHH
Q psy2401 5 CGLIGLPNVGKSTLFNALT 23 (363)
Q Consensus 5 i~lvG~~g~GKSTL~n~Lt 23 (363)
.+|+|+||+||||++.+|.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999999999996
No 383
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.76 E-value=0.0053 Score=53.00 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=22.1
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 1 MNLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 1 m~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
|...|+|.|++||||||+.+.|..
T Consensus 1 m~~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 1 MRGIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 667899999999999999999986
No 384
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.74 E-value=0.0045 Score=59.30 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=17.9
Q ss_pred EEEEeCCCCcHHHHHHHHH
Q psy2401 5 CGLIGLPNVGKSTLFNALT 23 (363)
Q Consensus 5 i~lvG~~g~GKSTL~n~Lt 23 (363)
.+|+|+|||||||||++|+
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999999998
No 385
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=95.73 E-value=0.01 Score=56.96 Aligned_cols=110 Identities=12% Similarity=0.199 Sum_probs=60.4
Q ss_pred ccccEEEeccccccCCCch----HHHHHHHHHHhcCCC---cEEEeeHHHHHHHhcCCHHHHHHHHhh-----cCCCchh
Q psy2401 198 TIKPIIFVANVKENGFKNN----LLLDQLKIYAHNQNI---PIIIICAKLEEEISDLNNIDKKFFLDN-----LGLKETK 265 (363)
Q Consensus 198 ~~kp~i~v~Nk~d~~~~~~----~~~~~i~~~~~~~~~---~~i~~sa~~e~~i~el~~~~~~~~l~~-----~~l~~~~ 265 (363)
..+|+++|+||+|.. ... ...+.+++.+.+.|. +++.+||+...++.++.+.. .+++.. .|-+..|
T Consensus 95 ~~~p~ilV~NK~DL~-~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l-~~~~~~~~i~~vG~~nvG 172 (368)
T 3h2y_A 95 GNNKVLLVGNKADLI-PKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAI-EYYRGGKDVYVVGCTNVG 172 (368)
T ss_dssp SSSCEEEEEECGGGS-CTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHH-HHHHTTSCEEEEEBTTSS
T ss_pred CCCcEEEEEEChhcC-CcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhh-hhhcccceEEEecCCCCC
Confidence 478999999999973 122 122333344555666 78999999887777654322 222222 1335566
Q ss_pred HHHHHHHHHHhC-----CCEEEEeC--CCCceEEEeecCCCCHHHhhhhhh
Q psy2401 266 LNDLIRASFSLL-----DLRTYFTV--GKKEIRAWTIPNGTTAEQAAGIIH 309 (363)
Q Consensus 266 l~~l~~~~~~~l-----~li~~ft~--g~~e~raw~~~~g~ta~~~A~~IH 309 (363)
--.++++++... ....+-.. -......+.+..+.+..|..|.++
T Consensus 173 KStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~ 223 (368)
T 3h2y_A 173 KSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIIN 223 (368)
T ss_dssp HHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCC
T ss_pred hhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCc
Confidence 667777766552 12211111 111233455555666666666554
No 386
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.71 E-value=0.0054 Score=51.97 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++.|+|+|++||||||+.+.|.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999986
No 387
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.70 E-value=0.006 Score=50.89 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
|+|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999975
No 388
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.69 E-value=0.0064 Score=51.99 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
+.|+|+|++||||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 389
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.67 E-value=0.0057 Score=52.16 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=20.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++.|+++|++||||||+.+.|..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 390
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.66 E-value=0.0062 Score=53.30 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
|+|+|.|+|||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999975
No 391
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=95.66 E-value=0.015 Score=51.48 Aligned_cols=58 Identities=12% Similarity=0.016 Sum_probs=35.3
Q ss_pred cccccEEEecccc-ccCCCchHHHHHHHHHHh----cCCCcEEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHH
Q psy2401 197 LTIKPIIFVANVK-ENGFKNNLLLDQLKIYAH----NQNIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIR 271 (363)
Q Consensus 197 l~~kp~i~v~Nk~-d~~~~~~~~~~~i~~~~~----~~~~~~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~ 271 (363)
+...|+++.+||. |.+. .-...++.+.+. .+.+.+.++||. +.+||.+.+.
T Consensus 160 L~gapLLVlANKqqDlp~--Ams~~EI~e~L~L~~l~R~W~Iq~csA~----------------------TGeGL~EGLd 215 (227)
T 3l82_B 160 SSGRPLLVLSCISQGDVK--RMPCFYLAHELHLNLLNHPWLVQDTEAE----------------------TLTGFLNGIE 215 (227)
T ss_dssp CSCSCEEEEEEESSTTSC--BCCHHHHHHHTTGGGGCSCEEEEEEETT----------------------TCTTHHHHHH
T ss_pred hCCCeEEEEeCCCcCccC--CCCHHHHHHHcCCcCCCCCEEEEEeECC----------------------CCcCHHHHHH
Confidence 3577999999994 5432 111222332221 245668899998 5677888777
Q ss_pred HHHHhCC
Q psy2401 272 ASFSLLD 278 (363)
Q Consensus 272 ~~~~~l~ 278 (363)
.+.+.+.
T Consensus 216 WL~~~l~ 222 (227)
T 3l82_B 216 WILEEVE 222 (227)
T ss_dssp HHTTTTT
T ss_pred HHHHHHH
Confidence 6665543
No 392
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.64 E-value=0.005 Score=55.32 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
-++|+|+||+|||||+++|++
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999997
No 393
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.57 E-value=0.0068 Score=53.31 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=21.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++.|.|+|+|||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999975
No 394
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.56 E-value=0.0056 Score=53.56 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
--++|+|+||+|||||++.|++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3579999999999999999996
No 395
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.55 E-value=0.0082 Score=51.27 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++.|+|.|+|||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999975
No 396
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.50 E-value=0.0082 Score=52.69 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++.|+|+|+|||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999975
No 397
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.49 E-value=0.0077 Score=52.74 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=20.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 398
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.49 E-value=0.0073 Score=55.61 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=22.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 1 MNLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 1 m~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
|++.|.|+|+|||||||+.+.|..
T Consensus 1 M~~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 1 MKKIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 777899999999999999999985
No 399
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.49 E-value=0.0082 Score=52.09 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=21.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++.|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999985
No 400
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.46 E-value=0.0078 Score=52.90 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
|.|.|+|+|||||+|....|+.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999986
No 401
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.43 E-value=0.036 Score=54.47 Aligned_cols=20 Identities=25% Similarity=0.301 Sum_probs=17.8
Q ss_pred EEEEEeCCCCcHHHHHHHHH
Q psy2401 4 KCGLIGLPNVGKSTLFNALT 23 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt 23 (363)
-|+++|++++|||+|+|.|.
T Consensus 69 vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 69 AVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCchhHHHHHHH
Confidence 37899999999999999775
No 402
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.43 E-value=0.0088 Score=52.84 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
+.|+|+|+|||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999985
No 403
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.41 E-value=0.0067 Score=55.90 Aligned_cols=21 Identities=19% Similarity=0.112 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
-++|+|+||+|||||++.|++
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 589999999999999999998
No 404
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.41 E-value=0.0063 Score=57.35 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
-.++|+|+||+|||||++++++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999974
No 405
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.40 E-value=0.0086 Score=50.95 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
|.|+|.|.+||||||+.+.|..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
No 406
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.40 E-value=0.0084 Score=50.76 Aligned_cols=22 Identities=41% Similarity=0.474 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..|.|.|++||||||+.+.|..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4599999999999999999984
No 407
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.40 E-value=0.01 Score=58.13 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=19.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHH
Q psy2401 3 LKCGLIGLPNVGKSTLFNALT 23 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt 23 (363)
..|+++|++||||||+...|+
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999997
No 408
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.39 E-value=0.0068 Score=55.35 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
-++|+|+||+|||||+++|++
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHH
Confidence 489999999999999999997
No 409
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.39 E-value=0.009 Score=53.63 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++.|+|.|++||||||+.+.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999985
No 410
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.33 E-value=0.0092 Score=53.59 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=21.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++.|+|.|+|||||||+.+.|..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999975
No 411
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.32 E-value=0.008 Score=55.74 Aligned_cols=22 Identities=23% Similarity=0.040 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..|||+|++|||||||.+.|.+
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999986
No 412
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.30 E-value=0.0098 Score=51.08 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
+.|+|+|++||||||+.+.|..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 413
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.22 E-value=0.0066 Score=54.83 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
+..|.++|+|||||||+.+.|..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999986
No 414
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.22 E-value=0.011 Score=52.34 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
|.|+|.|+|||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 415
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.20 E-value=0.011 Score=50.55 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
|-|+|.|++||||||+.+.|..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999985
No 416
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.20 E-value=0.0082 Score=60.27 Aligned_cols=22 Identities=14% Similarity=0.074 Sum_probs=19.1
Q ss_pred cEEEEEeCCCCcHHHHHHH--HHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNA--LTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~--Lt~ 24 (363)
--++|+|+||||||||++. +.|
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~G 63 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNG 63 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999 455
No 417
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.20 E-value=0.0086 Score=64.29 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
-.++|+|+||||||||+++|++
T Consensus 462 e~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999995
No 418
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.18 E-value=0.012 Score=51.68 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=21.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++.|+|+|+|||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999999975
No 419
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.17 E-value=0.01 Score=52.87 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=21.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++-|+|.|++||||||+.+.|..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999987
No 420
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.16 E-value=0.01 Score=51.82 Aligned_cols=23 Identities=43% Similarity=0.450 Sum_probs=20.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++.|+|+|++||||||+.+.|.+
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999986
No 421
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.15 E-value=0.0059 Score=53.02 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
+-|+|.|++||||||+.+.|..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999999999999986
No 422
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.09 E-value=0.0043 Score=60.01 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
.++|+|+||||||||+++|.+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 423
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.08 E-value=0.0087 Score=50.57 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=16.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
+.|.|.|.|||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 424
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.08 E-value=0.01 Score=54.74 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
+.-|.|.|+|||||||+.+.|..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999975
No 425
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.03 E-value=0.011 Score=53.39 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
.-++|+|+||||||||.+.|..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4589999999999999999975
No 426
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.01 E-value=0.012 Score=56.77 Aligned_cols=22 Identities=32% Similarity=0.223 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..++|+|+||+|||||+++|++
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999997
No 427
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.95 E-value=0.013 Score=51.26 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=17.6
Q ss_pred EEEEeCCCCcHHHHHHHHH
Q psy2401 5 CGLIGLPNVGKSTLFNALT 23 (363)
Q Consensus 5 i~lvG~~g~GKSTL~n~Lt 23 (363)
.+|+|+||+||||++.+|.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5789999999999999996
No 428
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.93 E-value=0.014 Score=50.25 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
+.|+|.|++||||||+.+.|..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999985
No 429
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.92 E-value=0.015 Score=49.59 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..++++|++|||||||++.|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 430
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.89 E-value=0.015 Score=52.76 Aligned_cols=22 Identities=50% Similarity=0.644 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
+.|.++|+|||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999999975
No 431
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.88 E-value=0.014 Score=51.46 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
.-++|+|+||+|||||+..|++
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999999997
No 432
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.86 E-value=0.012 Score=51.05 Aligned_cols=22 Identities=23% Similarity=0.108 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
--++|+|+||+|||||+..|++
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999986
No 433
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.84 E-value=0.015 Score=51.81 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=21.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
+..|+|+|++||||||+.+.|.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 434
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.83 E-value=0.025 Score=52.87 Aligned_cols=76 Identities=9% Similarity=-0.040 Sum_probs=46.3
Q ss_pred ccccEEEeccccccCCCchH---HHHHHHHHHhcCCCcEEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHH
Q psy2401 198 TIKPIIFVANVKENGFKNNL---LLDQLKIYAHNQNIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASF 274 (363)
Q Consensus 198 ~~kp~i~v~Nk~d~~~~~~~---~~~~i~~~~~~~~~~~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~ 274 (363)
..+|.++++||+|+. .+.+ ..+.+.+.+...|.+++++||.....+.+|.+-...+..-=.|-++.|--.+++.+.
T Consensus 116 ~~~~~vivlnK~DL~-~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~~~~G~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 116 NDIQPIICITKMDLI-EDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp TTCEEEEEEECGGGC-CCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGGGTTSEEEEEESHHHHHHHHHHHHC
T ss_pred CCCCEEEEEECCccC-chhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHhhcCCCEEEEECCCCCCHHHHHHHhc
Confidence 578889999999963 2222 245555666556889999999877666655322211222223334555556776654
No 435
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.79 E-value=0.018 Score=51.14 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
+.|.|+|++||||||+.+.|..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999986
No 436
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.77 E-value=0.016 Score=53.89 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
..++++|++||||||++..|++.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999863
No 437
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.69 E-value=0.015 Score=54.93 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=17.9
Q ss_pred EEEEeCCCCcHHHHHHHHHc
Q psy2401 5 CGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 5 i~lvG~~g~GKSTL~n~Lt~ 24 (363)
.+|+|+||+|||||+.+|+.
T Consensus 26 ~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999853
No 438
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.64 E-value=0.012 Score=59.60 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..++|+|++|||||||.++|.+
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHH
Confidence 5689999999999999999998
No 439
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.63 E-value=0.019 Score=51.37 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
|+.|++|+|||||||+...|..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHH
Confidence 8999999999999999999975
No 440
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=94.60 E-value=0.036 Score=39.77 Aligned_cols=52 Identities=27% Similarity=0.316 Sum_probs=41.7
Q ss_pred EEEeecCCCCHHHhhhhhhcchhcccEEEEEecccccccccChhhHhhcCceeecCCCeeeeCCCEEEEEe
Q psy2401 291 RAWTIPNGTTAEQAAGIIHTDIKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDGDILNFLF 361 (363)
Q Consensus 291 raw~~~~g~ta~~~A~~IHsD~~~gfi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdii~~~f 361 (363)
+...++.|+|+.|+|..||+++.+..+-|+| .|+ +...++.+++||.|+|.-
T Consensus 11 ~~~~~~~g~T~~dla~~i~~~l~~~~vaa~v-----------------Ng~--lvdl~~~L~~~~~Veivt 62 (73)
T 2kmm_A 11 EIKRLPQGATALDFAYSLHSDLGDHCIGAKV-----------------NHK--LVPLSYVLNSGDQVEVLS 62 (73)
T ss_dssp CEEEECTTCBHHHHHHHHCSHHHHTEEEEEE-----------------TTE--ECCTTCBCCSSSBEEEEE
T ss_pred CEEEcCCCCcHHHHHHHHhhccccceEEEEE-----------------CCE--EeCCCcCcCCCCEEEEEE
Confidence 3577899999999999999999988776652 143 347899999999988753
No 441
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.53 E-value=0.019 Score=51.48 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..+.|.|+||+|||||.++|.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4589999999999999999987
No 442
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.46 E-value=0.018 Score=52.63 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
--++|+|+||+|||||+..+++
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999999999999987
No 443
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.42 E-value=0.022 Score=51.19 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
+.|+|.|++||||||+.+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 444
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=94.39 E-value=0.017 Score=56.30 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHcC
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
-++|+|+||+|||||+++|++.
T Consensus 28 ~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 28 FTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999863
No 445
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.38 E-value=0.018 Score=55.01 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
-.+|+|+||+|||||+++|.+
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 468999999999999999975
No 446
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.37 E-value=0.021 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
..++++|+|||||||++..|++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHH
Confidence 46899999999999999999863
No 447
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.31 E-value=0.024 Score=53.35 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 1 MNLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 1 m~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
|+..|+|+|++|||||||...|..
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999986
No 448
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=94.30 E-value=0.073 Score=49.29 Aligned_cols=58 Identities=12% Similarity=0.024 Sum_probs=36.0
Q ss_pred cccccEEEeccc-cccCCCchHHHHHHHHHHh----cCCCcEEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHH
Q psy2401 197 LTIKPIIFVANV-KENGFKNNLLLDQLKIYAH----NQNIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIR 271 (363)
Q Consensus 197 l~~kp~i~v~Nk-~d~~~~~~~~~~~i~~~~~----~~~~~~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~ 271 (363)
+...|+++.+|| .|.+. .-...++.+.+. .+...+.++||. +++|+.+.+.
T Consensus 245 l~~apLLVfANKkQDlp~--Ams~~EI~e~L~L~~l~r~W~Iq~csA~----------------------tGeGL~EGld 300 (312)
T 3l2o_B 245 SSGRPLLVLSCISQGDVK--RMPCFYLAHELHLNLLNHPWLVQDTEAE----------------------TLTGFLNGIE 300 (312)
T ss_dssp CTTCCEEEEEEESSTTSC--BCCHHHHHHHTTGGGGCSCEEEEEEETT----------------------TCTTHHHHHH
T ss_pred cCCCeEEEEeCCcccccC--CCCHHHHHHHcCCccCCCcEEEEecccC----------------------CCcCHHHHHH
Confidence 357799999997 46532 111223332221 245568889997 5778888888
Q ss_pred HHHHhCC
Q psy2401 272 ASFSLLD 278 (363)
Q Consensus 272 ~~~~~l~ 278 (363)
.+.+.+.
T Consensus 301 WL~~~l~ 307 (312)
T 3l2o_B 301 WILEEVE 307 (312)
T ss_dssp HHHHHSC
T ss_pred HHHHHHH
Confidence 7766654
No 449
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.29 E-value=0.025 Score=47.17 Aligned_cols=22 Identities=36% Similarity=0.372 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
-.|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 450
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.23 E-value=0.016 Score=54.24 Aligned_cols=21 Identities=24% Similarity=0.435 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
-.+|+|+||+|||||+.+|..
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999984
No 451
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=94.22 E-value=0.014 Score=60.28 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=18.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHH
Q psy2401 3 LKCGLIGLPNVGKSTLFNALT 23 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt 23 (363)
-.++|+|+||||||||++.++
T Consensus 349 e~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 349 TFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp SEEEEECSTTSSHHHHHTTTH
T ss_pred CEEEEEeeCCCCHHHHHHHHH
Confidence 468999999999999998764
No 452
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.11 E-value=0.027 Score=51.67 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
+.|+|.|++||||||+.+.|..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999973
No 453
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.04 E-value=0.028 Score=48.72 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
+.|||.|.+||||||+.+.|..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 454
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.03 E-value=0.031 Score=56.32 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..++|+|+||+|||||.++|.+
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 455
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.02 E-value=0.052 Score=53.18 Aligned_cols=22 Identities=32% Similarity=0.378 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
.-|.|.||||+|||+|.+++++
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4588999999999999999997
No 456
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.98 E-value=0.035 Score=46.37 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..+.|.|++|+|||||.+++..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999986
No 457
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.93 E-value=0.038 Score=57.13 Aligned_cols=17 Identities=41% Similarity=0.423 Sum_probs=15.5
Q ss_pred cEEEEEeCCCCcHHHHH
Q psy2401 3 LKCGLIGLPNVGKSTLF 19 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~ 19 (363)
-.+||+|+||||||||+
T Consensus 45 e~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 45 KLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHh
Confidence 46899999999999996
No 458
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.92 E-value=0.03 Score=48.77 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++.|+|.|++||||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 459
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.83 E-value=0.033 Score=52.75 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
-|+|+|++|||||||...|..
T Consensus 9 lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHH
Confidence 589999999999999999986
No 460
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.81 E-value=0.034 Score=47.80 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..+.|.|+||+|||||..++.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999986
No 461
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.73 E-value=0.029 Score=53.26 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
.-++|+|+||+|||||++.|++
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999999997
No 462
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.68 E-value=0.66 Score=40.14 Aligned_cols=33 Identities=6% Similarity=-0.081 Sum_probs=23.8
Q ss_pred eeEEEEeeecc-cCCCCcccchhhHHHhhccccCEEEEEEecc
Q psy2401 66 AIIKLVDIAGL-VSGASKGEGLGNKFLAHIRETNIVIHVIRCF 107 (363)
Q Consensus 66 ~~i~lvDtpGl-~~~~~~~~~l~~~~l~~~~~aD~il~Vvda~ 107 (363)
..+.++|+|+. .. ......+..+|.++++++..
T Consensus 68 yD~viiD~p~~~~~---------~~~~~~l~~aD~viiv~~~~ 101 (209)
T 3cwq_A 68 YQNIVIDTQARPED---------EDLEALADGCDLLVIPSTPD 101 (209)
T ss_dssp CSEEEEEEECCCSS---------SHHHHHHHTSSEEEEEECSS
T ss_pred CCEEEEeCCCCcCc---------HHHHHHHHHCCEEEEEecCC
Confidence 46889999985 22 13445667899999999873
No 463
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.64 E-value=0.017 Score=56.43 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
.-+.|.||||+|||+|.+++++
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3488999999999999999997
No 464
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.63 E-value=0.014 Score=56.52 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
.-+-|.||||+|||+|.+++++
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHH
Confidence 4588999999999999999997
No 465
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.58 E-value=0.033 Score=58.46 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
-.++|+|+||+|||||++.+.+.
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 35899999999999999999873
No 466
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.58 E-value=0.037 Score=54.62 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++.|.++|.|||||||+.+.|..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999986
No 467
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.48 E-value=0.036 Score=58.48 Aligned_cols=23 Identities=22% Similarity=0.099 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
.-++|+|+||+|||||++.+.+.
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 35899999999999999999873
No 468
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.45 E-value=0.041 Score=48.72 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
-|.|+|+|||||||....|+.
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367789999999999999985
No 469
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.44 E-value=0.046 Score=47.74 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..+.|.|+||+|||||.+++..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999986
No 470
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.31 E-value=0.019 Score=56.21 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
.-|-|.||||+|||+|.+++++
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHH
Confidence 4688999999999999999997
No 471
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.27 E-value=0.036 Score=52.00 Aligned_cols=20 Identities=35% Similarity=0.247 Sum_probs=19.1
Q ss_pred EEEEeCCCCcHHHHHHHHHc
Q psy2401 5 CGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 5 i~lvG~~g~GKSTL~n~Lt~ 24 (363)
+.|.|+||+||||++++|++
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999987
No 472
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.06 E-value=0.15 Score=47.67 Aligned_cols=22 Identities=36% Similarity=0.395 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..+.|.|+||+|||+|.+++.+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 4588999999999999999987
No 473
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.05 E-value=0.049 Score=49.80 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..+.|.|+||+|||||.+++.+
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4688999999999999999987
No 474
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.00 E-value=0.052 Score=47.80 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=18.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
--++|+|+||+|||||...++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999777764
No 475
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.99 E-value=0.051 Score=50.21 Aligned_cols=22 Identities=27% Similarity=0.381 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..+.|.|+||+|||||.+++.+
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHH
Confidence 3588999999999999999997
No 476
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.95 E-value=0.046 Score=45.58 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..+.|.|++|+|||||.+++..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999986
No 477
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.79 E-value=0.052 Score=51.70 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
.+|+|+|++|+||||+.++|++.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 35999999999999999999863
No 478
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=92.76 E-value=0.055 Score=51.62 Aligned_cols=19 Identities=37% Similarity=0.628 Sum_probs=17.6
Q ss_pred EEEEeCCCCcHHHHHHHHH
Q psy2401 5 CGLIGLPNVGKSTLFNALT 23 (363)
Q Consensus 5 i~lvG~~g~GKSTL~n~Lt 23 (363)
.+|+|+||+||||++.||.
T Consensus 28 ~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 28 VAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999999996
No 479
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.74 E-value=0.064 Score=50.12 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
.-|+|+||+|||||||...|..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4588999999999999999986
No 480
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.66 E-value=0.041 Score=48.38 Aligned_cols=21 Identities=24% Similarity=0.153 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
.+.+.||||+||||+..+|.+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999986
No 481
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.66 E-value=0.11 Score=49.50 Aligned_cols=79 Identities=10% Similarity=0.045 Sum_probs=49.0
Q ss_pred ccccEEEeccccccCCCchHH---HHHHHHHHhcCCCcEEEeeHHHHHHHhcCCHHHHHHHHhhcCCCchhHHHHHHHHH
Q psy2401 198 TIKPIIFVANVKENGFKNNLL---LDQLKIYAHNQNIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASF 274 (363)
Q Consensus 198 ~~kp~i~v~Nk~d~~~~~~~~---~~~i~~~~~~~~~~~i~~sa~~e~~i~el~~~~~~~~l~~~~l~~~~l~~l~~~~~ 274 (363)
..+|.++|+||+|+. +.+. .+.+...+...|++++++||.....+.++......+...=.|-++.|--.+++.+.
T Consensus 159 ~~~~~iivlNK~DL~--~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~~~G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 159 LQVEPLIVLNKIDLL--DDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp HTCEEEEEEECGGGC--CHHHHHHHHHHHHHHHTTTCCEEECBTTTTBTHHHHHHHHTTSEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCEEEEEECccCC--CchhHHHHHHHHHHHHhCCCcEEEEecCCCcCHHHHHHhcCCCEEEEECCCCccHHHHHHHHh
Confidence 467779999999963 3332 33344445567899999999876666555332222222234556677777777776
Q ss_pred HhCC
Q psy2401 275 SLLD 278 (363)
Q Consensus 275 ~~l~ 278 (363)
..+.
T Consensus 237 g~~~ 240 (358)
T 2rcn_A 237 GLQN 240 (358)
T ss_dssp CCSS
T ss_pred cccc
Confidence 5443
No 482
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.63 E-value=0.091 Score=42.82 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..|.|.|+||+|||++.+++..
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999986
No 483
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.60 E-value=0.062 Score=48.74 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..+.|.|+||+|||||.+++.+
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4588999999999999999986
No 484
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=92.52 E-value=0.064 Score=53.48 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
.-+.|+|+||+|||||+++|.+.
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999999999973
No 485
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.50 E-value=0.072 Score=47.29 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=21.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHc
Q psy2401 2 NLKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 2 ~~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
++.|++.|.+||||||+.+.|..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999986
No 486
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.47 E-value=0.038 Score=54.55 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
..+.|+|+||+|||++.++|...
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999864
No 487
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.46 E-value=0.071 Score=49.09 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
.-+.|.|+||+|||+|.++++.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3466779999999999999986
No 488
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.44 E-value=0.07 Score=47.55 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..+.|.|+||+|||||.+++.+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999986
No 489
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.40 E-value=0.035 Score=54.16 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
.-|-|.||||+|||+|.+++++
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHH
Confidence 4588999999999999999997
No 490
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.32 E-value=0.065 Score=46.35 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHcC
Q psy2401 4 KCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
-+.|.|++|+|||||++.+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999763
No 491
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.30 E-value=0.06 Score=50.45 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=19.5
Q ss_pred EEEEeCCCCcHHHHHHHHHcC
Q psy2401 5 CGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 5 i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
+.|.|+||+||||+++++++.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999874
No 492
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.26 E-value=0.063 Score=53.77 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
--++|+|+||+|||||++.+++.
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 35899999999999999999983
No 493
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.22 E-value=0.068 Score=50.12 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..++++|++|+||||++..|++
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999975
No 494
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.22 E-value=0.076 Score=52.60 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
.-+.|+|+||+|||||.+++.+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999873
No 495
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.19 E-value=0.068 Score=50.21 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHc
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
..+.|.|++|+|||||++.+.+
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999986
No 496
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=92.17 E-value=0.048 Score=58.33 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=19.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
-++|+||||+|||||++.+.+
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHH
Confidence 589999999999999999864
No 497
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.13 E-value=0.075 Score=49.16 Aligned_cols=23 Identities=30% Similarity=0.257 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHcC
Q psy2401 3 LKCGLIGLPNVGKSTLFNALTKL 25 (363)
Q Consensus 3 ~~i~lvG~~g~GKSTL~n~Lt~~ 25 (363)
..++++|++|+||||++..|++.
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999863
No 498
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.12 E-value=0.066 Score=49.73 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
.+.|.|+||+|||||++++.+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 588999999999999999986
No 499
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.95 E-value=0.083 Score=45.09 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
.+.|.|++|+|||||.+.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999986
No 500
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.87 E-value=0.074 Score=48.75 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHc
Q psy2401 4 KCGLIGLPNVGKSTLFNALTK 24 (363)
Q Consensus 4 ~i~lvG~~g~GKSTL~n~Lt~ 24 (363)
.+.|.|+||+||||+.++|.+
T Consensus 49 ~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999987
Done!