RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2401
(363 letters)
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics,
structure 2 function project, S2F, unknown function;
2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Length = 363
Score = 577 bits (1491), Expect = 0.0
Identities = 185/362 (51%), Positives = 265/362 (73%)
Query: 1 MNLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKT 60
M KCG++GLPNVGKSTLFNALTK I A NYPFCTIEPN G++ +PD RL L IVK
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKP 60
Query: 61 KKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEIN 120
++I P ++ VDIAGLV+GASKGEGLGNKFLA+IRET+ + HV+RCF++D I H++G+I+
Sbjct: 61 ERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKID 120
Query: 121 PIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRL 180
P+ D + I TEL L+DL E+ I + K+ ++ + L ++++I+ L + IR
Sbjct: 121 PLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFELSVMEKILPVLENAGMIRS 180
Query: 181 MSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKL 240
+ L+ EEL +IK N LT+KP +++ANV E+GF+NN LD+++ A + ++ +CA +
Sbjct: 181 VGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240
Query: 241 EEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTVGKKEIRAWTIPNGTT 300
E EI++L++ +K FL +LG++E LN +IRA ++LL+L+TYFT G KE+RAWT+ G T
Sbjct: 241 ESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTVSVGAT 300
Query: 301 AEQAAGIIHTDIKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDGDILNFL 360
A +AA +IHTD ++GFIRA I+Y+DF+ + GE G K AGK R EGK Y+V+DGD+++F
Sbjct: 301 APKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMHFR 360
Query: 361 FN 362
FN
Sbjct: 361 FN 362
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio
project on protein structural and functional analyses;
HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Length = 368
Score = 540 bits (1395), Expect = 0.0
Identities = 153/368 (41%), Positives = 229/368 (62%), Gaps = 10/368 (2%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKK 62
L G++GLPNVGKSTLFNALT+ A NYPF TI+ N+G++ + D+RL L +
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGE 61
Query: 63 ----IFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGE 118
+ P ++ VDIAGLV GA KGEGLGN+FLAHIRE + HV+RCF D + H+ G
Sbjct: 62 RVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGR 121
Query: 119 INPIHDAEVIQTELILSDLAILEKYIDKENKKFFLK-NEHSIELLKLLKRIIFNLNKSIP 177
++P+ DAEV++TEL+L+DLA LE+ +++ K+ + + + LL+ + + +L + P
Sbjct: 122 VDPLEDAEVVETELLLADLATLERRLERLRKE--ARADRERLPLLEAAEGLYVHLQEGKP 179
Query: 178 IRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKN---NLLLDQLKIYAHNQNIPII 234
R + +K LLT KP+I+VANV E + N ++ ++ A + ++
Sbjct: 180 ARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVV 239
Query: 235 IICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTVGKKEIRAWT 294
++ A+LE E+++L+ + + L GL+E+ L L RA + LDL T+FT G+KE+RAWT
Sbjct: 240 VVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAGEKEVRAWT 299
Query: 295 IPNGTTAEQAAGIIHTDIKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDG 354
+ GT A +AAG IH+D++RGFIRA I + + G K G +R EGK Y V+DG
Sbjct: 300 VRRGTKAPRAAGEIHSDMERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDG 359
Query: 355 DILNFLFN 362
D++ LFN
Sbjct: 360 DVIYVLFN 367
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 537 bits (1387), Expect = 0.0
Identities = 144/369 (39%), Positives = 218/369 (59%), Gaps = 8/369 (2%)
Query: 1 MNLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKT 60
+LK G++GLPNVGKST FN LT + SAEN+PFCTI+PN + VPD+R L K
Sbjct: 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKP 80
Query: 61 KKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEIN 120
PA + +VDIAGLV GA G+GLGN FL+HI + + H+ R F+DD ITH+ G ++
Sbjct: 81 ASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVD 140
Query: 121 PIHDAEVIQTELILSDLAILEKYIDKENKKFF-LKNEHSIELLKLLKRII-FNLNKSIPI 178
PI D E+I EL L D ++ IDK K ++ ++ ++ + +++ P+
Sbjct: 141 PIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLKPEYDIMCKVKSWVIDQKKPV 200
Query: 179 RLM-SLNNEELMSIKFLNLLTIKPIIFVANVKENGF--KNNLLLDQLKIYA--HNQNIPI 233
R N++E+ + LT KP++++ N+ E + K N L ++K + ++ +
Sbjct: 201 RFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRKKNKWLIKIKEWVDKYDPGALV 260
Query: 234 IIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTVGKKEIRAW 293
I LE ++ +L+ +++ +L+ + ++ L +I+A F+ L L +FT G E+RAW
Sbjct: 261 IPFSGALELKLQELSAEERQKYLE-ANMTQSALPKIIKAGFAALQLEYFFTAGPDEVRAW 319
Query: 294 TIPNGTTAEQAAGIIHTDIKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVED 353
TI GT A QAAG IHTD ++GFI A + Y+DF E K AGK R +G+ Y+VED
Sbjct: 320 TIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVED 379
Query: 354 GDILNFLFN 362
GDI+ F FN
Sbjct: 380 GDIIFFKFN 388
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 529 bits (1366), Expect = 0.0
Identities = 132/373 (35%), Positives = 211/373 (56%), Gaps = 12/373 (3%)
Query: 1 MNLKCGLIGLPNVGKSTLFNALTKLKI-SAENYPFCTIEPNIGIIEVPDKRLKHLNNIVK 59
NLK G++G+PNVGKST F A+TK + + NYP+ TI+P + VPD+R L K
Sbjct: 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYK 78
Query: 60 TKKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEI 119
K PA + + DIAGL GAS G GLGN FL+H+R + + V+R F D +I H+ G++
Sbjct: 79 PKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDV 138
Query: 120 NPIHDAEVIQTELILSDLAILEKYIDKENKK-----FFLKNEHSIELLKLLKRIIFNLNK 174
+PI D +I EL++ D +EK+++ K L+ + E +++++ L +
Sbjct: 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEMKAKKEEQAIIEKVYQYLTE 198
Query: 175 S-IPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGF--KNNLLLDQLKIYA--HNQ 229
+ PIR +N E+ I L LLT KP+I++ N+ E F + N L ++K + ++
Sbjct: 199 TKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSP 258
Query: 230 NIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLDLRTYFTVGKKE 289
+I + EE +++ + L ++ L +I ++ L+L YFT G+ E
Sbjct: 259 GDTLIPMSVAFEERLTNFTEEEAIEECKKLNT-KSMLPKIIVTGYNALNLINYFTCGEDE 317
Query: 290 IRAWTIPNGTTAEQAAGIIHTDIKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKY 349
+R+WTI GT A QAAG+IHTD ++ F+ + Y+D YK E C+ AGK ++GK+Y
Sbjct: 318 VRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEY 377
Query: 350 LVEDGDILNFLFN 362
++E GDI ++
Sbjct: 378 VMESGDIAHWKAG 390
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 400 bits (1031), Expect = e-139
Identities = 97/412 (23%), Positives = 160/412 (38%), Gaps = 73/412 (17%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGII-EVPDKRLKHLNNIVKTK 61
++ G++G PNVGKST F+A T + + NYPF TIE N+G+ + D K L +
Sbjct: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQ 60
Query: 62 KIF------PAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKD-DKITH 114
+K+VD+AGLV GA +G GLGNKFL +R + +IHV+ D
Sbjct: 61 NYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQ 120
Query: 115 ISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELLKLLKRIIFNLNK 174
+ +P+ D E ++ E+ IL K DK K+ L+ + I
Sbjct: 121 PTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNEN 180
Query: 175 SI---------PIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIY 225
+ P + ++L++ KP++ AN + ++ + +L
Sbjct: 181 DVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAA--SDEQIKRLVRE 238
Query: 226 AHNQNIPIIIICAKLE------------------EEISDLNNIDKKFFLDNLGLKETKLN 267
+ +I A E E L ++ +K + +KE L+
Sbjct: 239 EEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLD 298
Query: 268 ---------DLIRASFSLLDLRTYFTV----------GKKEIRAWTIPNGTTAEQAAGII 308
+ R F LL L + V G + + G+T A +
Sbjct: 299 RFGSTGVQEVINRVVFDLLKLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKV 358
Query: 309 HTDIKRGFIRALTISYKDFLLYKGEQGCKNAGKIRSEGKKYLVEDGDILNFL 360
HTD+ +GF+ A NA R G+ Y ++ DI+ +
Sbjct: 359 HTDLGKGFLYA-----------------INARTKRRVGEDYELQFNDIVKIV 393
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 101 bits (253), Expect = 2e-24
Identities = 49/139 (35%), Positives = 77/139 (55%), Gaps = 27/139 (19%)
Query: 6 GLIGLPNVGKSTLFNALT--KLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKI 63
GL+G P+VGKSTL + ++ K KI+ +Y F T+ PN+G++E D R + V
Sbjct: 162 GLVGFPSVGKSTLLSVVSSAKPKIA--DYHFTTLVPNLGMVETDDGR-----SFV----- 209
Query: 64 FPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIH 123
+ D+ GL+ GA +G GLG++FL HI T +++HVI D ++ + G +P
Sbjct: 210 ------MADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVI----D--MSGLEGR-DPYD 256
Query: 124 DAEVIQTELILSDLAILEK 142
D I EL +L + E+
Sbjct: 257 DYLTINQELSEYNLRLTER 275
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 101 bits (254), Expect = 3e-24
Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 31/139 (22%)
Query: 6 GLIGLPNVGKSTLFNALT--KLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKI 63
GL+G PN GKS+L A+T KI+ YPF T+ PN+G++EV ++
Sbjct: 161 GLVGYPNAGKSSLLAAMTRAHPKIA--PYPFTTLSPNLGVVEVSEEE-----RFT----- 208
Query: 64 FPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIH 123
L DI G++ GAS+G+GLG +FL HI T ++++V+ + P+
Sbjct: 209 ------LADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADE-----------PLK 251
Query: 124 DAEVIQTELILSDLAILEK 142
E ++ E+ D A+L +
Sbjct: 252 TLETLRKEVGAYDPALLRR 270
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 69.8 bits (171), Expect = 4e-14
Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 23/103 (22%)
Query: 6 GLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFP 65
L G PNVGKS+ N +++ + ++Y F T +G + +
Sbjct: 33 ILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNK--------------- 77
Query: 66 AIIKLVDIAGLVSGASKGEGLGNK----FLAHIRETNIVIHVI 104
+++D GL+ A + LAHI +++ +I
Sbjct: 78 --YQIIDTPGLLDRAFENRNTIEMTTITALAHIN--GVILFII 116
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 61.8 bits (150), Expect = 7e-11
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 19/102 (18%)
Query: 5 CGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIF 64
+ G PNVGKSTL ALT K +YPF T N+G E R
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFR-------------- 215
Query: 65 PAIIKLVDIAGLVSGAS--KGEGLGNKFLAHIRETNIVIHVI 104
+++D GL+ + E LA N++I++
Sbjct: 216 ---YQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIF 254
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.6 bits (151), Expect = 8e-11
Identities = 68/389 (17%), Positives = 130/389 (33%), Gaps = 110/389 (28%)
Query: 20 NALTKLKISAENYPFCTIEPNIGII-EVPDKR-LKHLNNIVKT------KKIF----PAI 67
L +L + ++ Y C + ++ V + + N K K++ A
Sbjct: 232 AELRRL-LKSKPYENCLL-----VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 68 IKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAEV 127
+ + + E +++ + C + + NP + +
Sbjct: 286 TTHISLDHHSMTLTPDEVKS-----------LLLKYLDC-RPQDLPREVLTTNPRRLS-I 332
Query: 128 IQTELILSDLAILEKY----IDKENK--KFFLKNEHSIELLKLLKRI-IFNLNKSIPIRL 180
I E I LA + + DK + L E K+ R+ +F + IP L
Sbjct: 333 I-AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 181 MSL-----NNEELMSIKFLNLLTIKPIIFVANVKENGFKNNL-LLD-QLKIYAHNQNIPI 233
+SL ++M + +N L ++ ++ ++ + + L++ +N
Sbjct: 392 LSLIWFDVIKSDVMVV--VNKLHKYSLV-----EKQPKESTISIPSIYLELKVKLENEY- 443
Query: 234 IIICAKLEEEISDLNNIDKKFFLDNLG---------------LKETKLNDLIRASFS--L 276
L I D NI K F D+L LK + + + F
Sbjct: 444 -----ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM-TLFRMVF 497
Query: 277 LDLRTYFTVGKKEIRAWTIPNGTTAEQAAGIIHT--DIKRGFIRALTISYKDFLLYKGEQ 334
LD R F + +K IR + T + I++T +K YK ++
Sbjct: 498 LDFR--F-LEQK-IRH----DSTAWNASGSILNTLQQLKF---------YKPYI------ 534
Query: 335 GCKNAGKIRSEGKKYLVEDGDILNFLFNI 363
C N K ++ + IL+FL I
Sbjct: 535 -CDNDPKY----ERLV---NAILDFLPKI 555
Score = 49.9 bits (118), Expect = 9e-07
Identities = 53/344 (15%), Positives = 97/344 (28%), Gaps = 113/344 (32%)
Query: 17 TLFNALTKLKISAENYP--FCTIEP-NIGII-----EVPD--KRLKHLNNIVKTKKIFPA 66
+L L L ++ P T P + II + KH+N K I +
Sbjct: 305 SLL--LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD-KLTTIIES 361
Query: 67 IIKLVDIAGLVSGASKGEGLGNKFLAHIRE--TNIVIHVIRCFKDDKITHISGEINPI-- 122
+ +++ A R+ + + F HI + +
Sbjct: 362 SLNVLEPAEY------------------RKMFDRLSV-----FPPS--AHIPTILLSLIW 396
Query: 123 HDAEVIQTELILSDLAILEKY--IDKENKKF--------FLKNEHSIELLKLLKRII--- 169
D ++++ L KY ++K+ K+ L + I+
Sbjct: 397 FDVIKSDVMVVVNKL---HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 170 -----FNLNKSIPIR------------LMSLNNEE---LMSIKFLNL--LTIKPIIFVAN 207
F+ + IP L ++ + E L + FL+ L K
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513
Query: 208 VKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLN 267
+G N L LK Y K + DN E +N
Sbjct: 514 WNASGSILNTLQQ-LKFY--------------------------KPYICDNDPKYERLVN 546
Query: 268 DLIRASFSLLDLRTYFTVGK-KEI--RAWTIPNGTTAEQAAGII 308
++ F L + K ++ A + E+A +
Sbjct: 547 AILD--F-LPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport,
transmembrane; HET: GDP; 2.20A {Methanocaldococcus
jannaschii}
Length = 188
Score = 47.9 bits (115), Expect = 7e-07
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLK 52
+ + LIG PNVGKST+FNALT + N+P T+E G E ++ K
Sbjct: 7 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFK 57
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins,
cell membrane, ION transport, transmembrane; HET: GNP;
1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A*
2wjh_A*
Length = 165
Score = 47.5 bits (114), Expect = 7e-07
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLK 52
+ + LIG PNVGKST+FNALT + N+P T+E G E ++ K
Sbjct: 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFK 53
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION
transport, membrane; 1.80A {Escherichia coli} PDB:
3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 47.7 bits (114), Expect = 2e-06
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLK 52
L GLIG PN GK+TLFN LT + N+ T+E G D ++
Sbjct: 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVT 53
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small
GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga
maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 46.9 bits (112), Expect = 3e-06
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLK 52
+K L G PNVGK++LFNALT K N+P T+E G+ +
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTIN 55
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 46.9 bits (112), Expect = 4e-06
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 1 MNLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLK 52
+ L+G PNVGK+T+FNALT L+ N+P T+E GI+E +K
Sbjct: 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFL 53
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron
uptake, cell inner membrane, cell GTP-binding, ION
transport, membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 46.5 bits (111), Expect = 4e-06
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLK 52
LIG PN GK+TLFNALT N+P T+E G + + ++
Sbjct: 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIE 51
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 43.1 bits (102), Expect = 3e-05
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 7 LIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIE 45
G NVGKSTL LT K+ P T + +
Sbjct: 6 FAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK 44
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 43.8 bits (104), Expect = 3e-05
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGII 44
+ LIG PN GK++LFN +T N+P T+E G++
Sbjct: 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV 45
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 43.8 bits (104), Expect = 6e-05
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 7 LIGLPNVGKSTLFNALTKLKISAENYPFCTIEP 39
++G N GK++LFN+LT L + F T+ P
Sbjct: 184 IVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSP 216
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S
rRNA, 30S ribosome ASSE GTP-binding,
nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus}
PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 42.1 bits (100), Expect = 1e-04
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 2 NLKCG---LIGLPNVGKSTLFNALTKLKIS 28
++K G ++G PNVGKSTL N L K+S
Sbjct: 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVS 36
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 42.1 bits (100), Expect = 2e-04
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 4 KCG---LIGLPNVGKSTLFNALTKLKIS 28
G ++G PNVGKSTL N L +K++
Sbjct: 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVA 33
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 40.5 bits (96), Expect = 2e-04
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 7 LIGLPNVGKSTLFNALTKLKIS 28
++G PNVGKS+LFN L K + +
Sbjct: 6 IVGRPNVGKSSLFNRLLKKRSA 27
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 42.1 bits (100), Expect = 2e-04
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 4 KCG---LIGLPNVGKSTLFNALTKLKIS 28
CG ++G PNVGKSTL N L KIS
Sbjct: 7 YCGFIAIVGRPNVGKSTLLNKLLGQKIS 34
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA
maturation, GTP-binding domain, maturation enzyme,
oxidoreductase; 2.99A {Thermotoga neapolitana}
Length = 423
Score = 40.8 bits (96), Expect = 4e-04
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 6 GLIGLPNVGKSTLFNALTKLKIS 28
+ G NVGKS+ NAL +S
Sbjct: 38 VVAGRRNVGKSSFMNALVGQNVS 60
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 40.9 bits (97), Expect = 5e-04
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 7 LIGLPNVGKSTLFNALTKLKIS 28
++G PNVGKSTLFN L K K +
Sbjct: 6 IVGRPNVGKSTLFNKLVKKKKA 27
Score = 36.3 bits (85), Expect = 0.011
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 7 LIGLPNVGKSTLFNAL 22
++G PNVGKSTLFNA+
Sbjct: 185 IVGRPNVGKSTLFNAI 200
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 40.9 bits (97), Expect = 5e-04
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 7 LIGLPNVGKSTLFNALTKLKIS 28
++G PNVGKST+FN + +IS
Sbjct: 8 IVGRPNVGKSTIFNRIAGERIS 29
Score = 35.9 bits (84), Expect = 0.015
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 7 LIGLPNVGKSTLFNAL 22
LIG PNVGKS+L NA+
Sbjct: 180 LIGRPNVGKSSLVNAM 195
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 39.2 bits (92), Expect = 0.001
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKI 27
+ ++G+PN GKST+ N L +
Sbjct: 100 ARVLIVGVPNTGKSTIINKLKGKRA 124
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 38.1 bits (89), Expect = 0.003
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 2 NLKCGLIGLPNVGKSTLFNALTKLKI 27
++ +IG+PNVGKSTL N L K I
Sbjct: 120 AIRALIIGIPNVGKSTLINRLAKKNI 145
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 38.0 bits (88), Expect = 0.004
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPN--IGIIEVPDK 49
++G NVGKST N + + N + P + +IE+P +
Sbjct: 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE 211
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 37.5 bits (88), Expect = 0.006
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 3 LKCGLIGLPNVGKSTLFNALTK 24
+ + G PN GKSTL N L
Sbjct: 234 VSTVIAGKPNAGKSTLLNTLLG 255
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 37.3 bits (86), Expect = 0.006
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 4 KCGLIGLPNVGKSTLFNALTK 24
++G NVGKST N + K
Sbjct: 162 DVYVVGCTNVGKSTFINRMIK 182
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 37.1 bits (87), Expect = 0.007
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 7 LIGLPNVGKSTLFNALTK 24
++G PNVGKS+L NA ++
Sbjct: 229 IVGRPNVGKSSLLNAWSQ 246
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 37.1 bits (87), Expect = 0.007
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 7 LIGLPNVGKSTLFNALTK 24
++G PNVGKSTL N L
Sbjct: 248 IVGKPNVGKSTLLNRLLN 265
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 36.0 bits (84), Expect = 0.008
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 7 LIGLPNVGKSTLFNALTK 24
+ G PN GKS+L NAL
Sbjct: 9 IAGRPNAGKSSLLNALAG 26
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.009
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 214 KNNL--LLDQLKIYAHNQNIPIIIICAKLE 241
K L L LK+YA + + P + I A +E
Sbjct: 19 KQALKKLQASLKLYADD-SAPALAIKATME 47
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 33.6 bits (77), Expect = 0.068
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 7 LIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLN 55
+GL + GK+ LF L + +I + I +V + R L
Sbjct: 12 FVGLCDSGKTLLFVRL-LTGQYRDTQT--SITDSSAIYKVNNNRGNSLT 57
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 33.9 bits (77), Expect = 0.068
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 6 GLIGLPNVGKSTLFNALTKLKISAEN 31
+ G GKS+ N L + E
Sbjct: 73 AVTGETGSGKSSFINTLRGIGNEEEG 98
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein
NEDD3, neural precursor cell expressed developmentally
DOWN-regulated protein 3; NMR {Homo sapiens}
Length = 93
Score = 30.2 bits (68), Expect = 0.26
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 17/90 (18%)
Query: 273 SFSLLDLRTYFTVGKKEIRAWTIP-----NGTTAEQAAGIIHTDIKRGFIRALTISYKDF 327
S L L +T K ++ +T P + TT E IH ++ + F AL
Sbjct: 5 SSGYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALV------ 58
Query: 328 LLYKGEQGCKNAGKIRSEGKKYLVEDGDIL 357
K+ + GK + +ED D++
Sbjct: 59 ----WGLSVKHNPQKV--GKDHTLEDEDVI 82
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase;
2.95A {Clostridium perfringens}
Length = 560
Score = 32.0 bits (72), Expect = 0.37
Identities = 15/95 (15%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 135 SDLAILEKYIDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSIKFL 194
DLA ++ + K + E E + +K + LN + ++ N +K
Sbjct: 461 KDLAFAARFANGGVSKKIIDEEARQEYKEDMKYVNEILNLGLDYDFLNENEFYHTLLKTT 520
Query: 195 N-----LLTIKPIIFVANVKENGFKNNLLLDQLKI 224
L+ ++ + + +E N ++ K+
Sbjct: 521 KPIIMHLMGLEENVMRNSTEELKILNEWIVRMGKV 555
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.48
Identities = 52/347 (14%), Positives = 101/347 (29%), Gaps = 158/347 (45%)
Query: 10 LPNVGKSTLFNALT--KLKISA--------ENYPF-------CTIEPNIG-IIEVPDKRL 51
S LF A+ ++ A ++Y F T +G +I+ + L
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY-FEELRDLYQTYHVLVGDLIKFSAETL 195
Query: 52 KHL-NNIVKTKKIFPA----------------------------IIKLVDIA-------- 74
L + +K+F +I ++ +A
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL 255
Query: 75 -GL--------VSGAS-KGEGL-----------GNKFLAHIRET-NIVIHV-IRCFK--- 108
G + GA+ +GL F +R+ ++ + +RC++
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP 315
Query: 109 ---------DDKITHISGEINPIHDAEVIQTELILSDLAI--LEKYIDKENKKFFLKNEH 157
+D + + G +P+ L +S+L ++ Y++K N +
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPM---------LSISNLTQEQVQDYVNKTNSHLP-AGKQ 365
Query: 158 -SIELLKLLKRIIFNLNKSI-----PIRLMSLNNEELMSIK------------------- 192
I L N K++ P L LN L K
Sbjct: 366 VEISL--------VNGAKNLVVSGPPQSLYGLNL-TLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 193 ---FLNLLTIKPII--F--------VANVKENGFKNNLLLD--QLKI 224
FL P+ F + ++ KNN+ + ++I
Sbjct: 417 SNRFL------PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 30.9 bits (71), Expect = 0.50
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Query: 6 GLIGLPN-VGKSTLFNALT 23
+IG PN GKSTL N +T
Sbjct: 37 LIIG-PNGSGKSTLINVIT 54
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 29.8 bits (67), Expect = 1.2
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 3 LKCGLIGLPNVGKSTLFNAL 22
+ ++G VGKS+ N+L
Sbjct: 37 MTVLVLGKGGVGKSSTVNSL 56
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 29.6 bits (67), Expect = 1.4
Identities = 9/20 (45%), Positives = 9/20 (45%)
Query: 7 LIGLPNVGKSTLFNALTKLK 26
G N GKST N L K
Sbjct: 34 FAGRSNAGKSTAINVLCNQK 53
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 29.1 bits (66), Expect = 1.7
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 7 LIGLPNVGKSTLFNALTKLK 26
G N GKS+ N LT K
Sbjct: 31 FAGRSNAGKSSALNTLTNQK 50
>3e8l_C Serine proteinase inhibitor A; beta-trefoil fold, protease
inhibitor, complex, DIG hydrolase, metal-binding,
protease, secreted; 2.48A {Sagittaria sagittifolia}
Length = 185
Score = 28.9 bits (64), Expect = 1.7
Identities = 15/109 (13%), Positives = 32/109 (29%), Gaps = 17/109 (15%)
Query: 267 NDLIRASFSLLDLRTYFTVGKK--EIRAWTIPNGTTAEQAAGIIHTDIKRGFIRALTI-- 322
+++ + F++ AW+I T + T ++ +
Sbjct: 76 QPVMQLGS---RYKFSFSMPVPLICDTAWSIGKSETNGGISFQPITAGDYFYLNNFSWFE 132
Query: 323 --SYKDFLLYK--------GEQGCKNAGKIRSEGKKYLVEDGDILNFLF 361
S ++ +YK + C G G+ L G+ F
Sbjct: 133 ARSTEETGVYKLAACSCEFCKIACPEVGSFNVNGRTLLGIGGEHFTVQF 181
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 29.1 bits (66), Expect = 1.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 7 LIGLPNVGKSTLFNALTKLKI 27
+G NVGKS+L NAL KI
Sbjct: 28 FVGRSNVGKSSLLNALFNRKI 48
>2edm_A 22KDA structural protein VP22; beta barrel, beta sheet protruding
region, viral protein; 2.20A {Shrimp white spot syndrome
virus} SCOP: b.170.1.1
Length = 161
Score = 28.6 bits (63), Expect = 2.1
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 193 FLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242
+N +T++P + N+K N N + I + + I +I +C+K E+
Sbjct: 89 LINDITVRPTVIAGNIKGNTMSNTYFSSK-DIKSSSSKITLIDVCSKFED 137
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 29.1 bits (66), Expect = 2.2
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 5 CGLIGLPN-VGKSTLFNALTKLKISAENYPFCTIEPNIGIIEV 46
++G N GKSTL + L + P G IEV
Sbjct: 34 LAVLG-QNGCGKSTLLDLLLGI-----------HRPIQGKIEV 64
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 28.7 bits (65), Expect = 2.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 7 LIGLPNVGKSTLFNALTKLK 26
L G NVGKS+ N+L K
Sbjct: 28 LAGRSNVGKSSFINSLINRK 47
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 28.7 bits (65), Expect = 2.6
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 5 CGLIGLPN-VGKSTLFNALTKLK 26
L+G PN GKSTL + +
Sbjct: 29 LHLVG-PNGAGKSTLLARMAGMT 50
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 29.2 bits (65), Expect = 2.7
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVP 47
+ G+ G GKSTL A+ ++ + +P + + V
Sbjct: 463 RYGICGPNGCGKSTLMRAIANGQV--DGFP---TQEECRTVYVE 501
>2jmp_A Chromosomal replication initiator protein DNAA; N-terminal, domain,
structural genomics, PSI, protein structure initiative;
NMR {Mycoplasma genitalium}
Length = 107
Score = 27.3 bits (60), Expect = 3.3
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 204 FVANVKENGFKNNLLL----DQLKIYAHNQNIPIIIICAKLEEEISDLNNIDKKFFLDNL 259
++ ++ FKNN+LL ++ + N N II + L E I +N ++++ F NL
Sbjct: 32 YIKDINRFVFKNNVLLILLENEFARNSLNDNSEIIHLAESLYEGIKSVNFVNEQDFFFNL 91
Query: 260 G-LKETKLNDLIRAS 273
L+E + L + S
Sbjct: 92 AKLEENSRDTLYQNS 106
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 28.4 bits (63), Expect = 3.6
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 7 LIGLPNVGKSTLFNAL 22
++G VGKS+ N++
Sbjct: 44 VMGKGGVGKSSTVNSI 59
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 28.3 bits (63), Expect = 3.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 6 GLIGLPNVGKSTLFNALTK 24
G+ G+P VGKST AL
Sbjct: 83 GITGVPGVGKSTAIEALGM 101
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 28.3 bits (63), Expect = 3.9
Identities = 9/19 (47%), Positives = 9/19 (47%)
Query: 6 GLIGLPNVGKSTLFNALTK 24
GL G P GKST K
Sbjct: 78 GLSGPPGAGKSTFIEYFGK 96
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2,
protein structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 27.8 bits (62), Expect = 5.0
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 6 GLIGLPNVGKSTLFNALTK 24
G+ G P GKST A
Sbjct: 60 GVTGTPGAGKSTFLEAFGM 78
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP:
c.37.1.10 PDB: 2qm7_A*
Length = 337
Score = 27.8 bits (62), Expect = 5.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 6 GLIGLPNVGKSTLFNALTK 24
G+ G+P VGKST +AL
Sbjct: 59 GITGVPGVGKSTTIDALGS 77
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 27.7 bits (61), Expect = 5.7
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 1 MNLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIV 58
+ K L+G GKS++ + + SA + + I + + L ++ +
Sbjct: 2 LGSKLLLMGRSGSGKSSMRSIIFS-NYSAFDTR--RLGATIDVEHSHLRFLGNMTLNL 56
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 27.4 bits (61), Expect = 5.9
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 5 CGLIGLPNVGKSTLFNALTKL 25
L G P GKSTL N L
Sbjct: 25 VALSGAPGSGKSTLSNPLAAA 45
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase
fold, carboxylesterase, Ser- hydrolase; 2.00A
{Streptococcus mutans}
Length = 292
Score = 27.6 bits (61), Expect = 6.6
Identities = 12/111 (10%), Positives = 28/111 (25%), Gaps = 4/111 (3%)
Query: 132 LILSDLAILEKYIDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEELMSI 191
I + + Y + + + + LK + L S ++L
Sbjct: 138 FIGLEPTTVMIYRAGFSSDLYPQLALRRQKLKTAADRLNYLKDLSRSHFSSQQFKQLWRG 197
Query: 192 KFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242
+ + + + K ++ IP I+ E
Sbjct: 198 YDYCQRQLNDVQSLPDFKIRLALGEEDFKTGI----SEKIPSIVFSESFRE 244
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 27.2 bits (60), Expect = 7.5
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 7 LIGLPNVGKSTLFNALT-KLKISAENYPFCTIEPNIGIIE 45
L+GL GKS++ + K+ + + T + I
Sbjct: 25 LMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDIS 64
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface,
cell adhesion; 2.70A {Campylobacter jejuni subsp}
Length = 379
Score = 27.5 bits (60), Expect = 7.6
Identities = 28/141 (19%), Positives = 49/141 (34%), Gaps = 4/141 (2%)
Query: 128 IQTELILSDLAILEKYIDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLNNEE 187
IQ+ L+ D + EK + N F ++ + L + L+ I N +
Sbjct: 133 IQSNLVFEDFKLGEKVVSDINASLFQQDPKISSFINKLSSDSYTLSFDNSINKQENNYLD 192
Query: 188 LMSIKFLNLLTIKPIIFVANVKENGF----KNNLLLDQLKIYAHNQNIPIIIICAKLEEE 243
+ IKF N N+KE+ + + + Q I ++ E+
Sbjct: 193 NLDIKFYNAKLNFNTNLNINLKEDLLNYLDSKGIKFNTQTLAMDEQAINELLNMVNYEQA 252
Query: 244 ISDLNNIDKKFFLDNLGLKET 264
N I K L+N + T
Sbjct: 253 SDFSNTIQKYIILNNFKIDST 273
>2r1f_A Protein YCEG, predicted aminodeoxychorismate lyase; structural
genomics, unknown function, PFAM 02618, PSI-2, PR
structure initiative; 2.21A {Escherichia coli}
Length = 270
Score = 27.2 bits (61), Expect = 9.0
Identities = 5/63 (7%), Positives = 17/63 (26%), Gaps = 3/63 (4%)
Query: 269 LIRASFSLLDLRTYFTVGKKEIRAWTIPNGTTAEQAAGIIHTDIKRGFIRALTISYKDFL 328
++ ++ GK+ + G + + +I+ K
Sbjct: 18 RFTPQMTVREMLKLLESGKEAQFPLRLVEGMRLSDYLKQLR---EAPYIKHTLSDDKYAT 74
Query: 329 LYK 331
+ +
Sbjct: 75 VAQ 77
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.142 0.401
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,558,012
Number of extensions: 355071
Number of successful extensions: 1257
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1217
Number of HSP's successfully gapped: 114
Length of query: 363
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 268
Effective length of database: 4,049,298
Effective search space: 1085211864
Effective search space used: 1085211864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)