RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2401
(363 letters)
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 314 bits (807), Expect = e-107
Identities = 136/278 (48%), Positives = 200/278 (71%)
Query: 1 MNLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKT 60
M KCG++GLPNVGKSTLFNALTK I A NYPFCTIEPN G++ +PD RL L IVK
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKP 60
Query: 61 KKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEIN 120
++I P ++ VDIAGLV+GASKGEGLGNKFLA+IRET+ + HV+RCF++D I H++G+I+
Sbjct: 61 ERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKID 120
Query: 121 PIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRL 180
P+ D + I TEL L+DL E+ I + K+ ++ + L ++++I+ L + IR
Sbjct: 121 PLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFELSVMEKILPVLENAGMIRS 180
Query: 181 MSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKL 240
+ L+ EEL +IK N LT+KP +++ANV E+GF+NN LD+++ A + ++ +CA +
Sbjct: 181 VGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240
Query: 241 EEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLD 278
E EI++L++ +K FL +LG++E LN +IRA ++LL+
Sbjct: 241 ESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLN 278
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 220 bits (562), Expect = 1e-70
Identities = 93/289 (32%), Positives = 147/289 (50%), Gaps = 12/289 (4%)
Query: 1 MNLKCGLIGLPNVGKSTLFNALTKLKIS-AENYPFCTIEPNIGIIEVPDKRLKHLNNIVK 59
NLK G++G+PNVGKST F A+TK + NYP+ TI+P + VPD+R L K
Sbjct: 9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYK 68
Query: 60 TKKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEI 119
K PA + + DIAGL GAS G GLGN FL+H+R + + V+R F D +I H+ G++
Sbjct: 69 PKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDV 128
Query: 120 NPIHDAEVIQTELILSDLAILEKYIDKENKKFFL------KNEHSIELLKLLKRIIFNLN 173
+PI D +I EL++ D +EK+++ K E + K +
Sbjct: 129 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEMKAKKEEQAIIEKVYQYLTE 188
Query: 174 KSIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGF--KNNLLLDQLKIYA--HNQ 229
PIR +N E+ I L LLT KP+I++ N+ E F + N L ++K + ++
Sbjct: 189 TKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSP 248
Query: 230 NIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLD 278
+I + EE +++ + L ++ L +I ++ L+
Sbjct: 249 GDTLIPMSVAFEERLTNFTEEEAIEECKKLNT-KSMLPKIIVTGYNALN 296
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 186 bits (472), Expect = 6e-57
Identities = 75/311 (24%), Positives = 130/311 (41%), Gaps = 26/311 (8%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGII-EVPDKRLKHLNNIVKTK 61
++ G++G PNVGKST F+A T + + NYPF TIE N+G+ + D K L +
Sbjct: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQ 60
Query: 62 K------IFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKI-TH 114
+ +K+VD+AGLV GA +G GLGNKFL +R + +IHV+
Sbjct: 61 NYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQ 120
Query: 115 ISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLK--------NEHSIELLKLLK 166
+ +P+ D E ++ E+ IL K DK K+ L+ EH +
Sbjct: 121 PTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNEN 180
Query: 167 RIIFNLNK-SIPIRLMSLNNEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIY 225
+ ++K ++P + ++L++ KP++ AN + + +L
Sbjct: 181 DVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAASDEQ--IKRLVRE 238
Query: 226 AHNQNIPIIIICAKLEEEISDLNNIDKKFFLDNLGLKETKLNDLIRASFSLLD------L 279
+ +I A E + ++ + L D+ L L
Sbjct: 239 EEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGAS-EFKVLRDMSEKQKRALMVIKEKVL 297
Query: 280 RTYFTVGKKEI 290
+ + G +E+
Sbjct: 298 DRFGSTGVQEV 308
>d1jala2 d.15.10.2 (A:279-363) YchF GTP-binding protein, C-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 85
Score = 139 bits (353), Expect = 5e-42
Identities = 49/85 (57%), Positives = 66/85 (77%)
Query: 279 LRTYFTVGKKEIRAWTIPNGTTAEQAAGIIHTDIKRGFIRALTISYKDFLLYKGEQGCKN 338
L+TYFT G KE+RAWT+ G TA +AA +IHTD ++GFIRA I+Y+DF+ + GE G K
Sbjct: 1 LQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKE 60
Query: 339 AGKIRSEGKKYLVEDGDILNFLFNI 363
AGK R EGK Y+V+DGD+++F FN+
Sbjct: 61 AGKWRLEGKDYIVQDGDVMHFRFNV 85
>d1ni3a2 d.15.10.2 (A:307-388) YchF GTP-binding protein, C-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 82
Score = 127 bits (320), Expect = 3e-37
Identities = 38/81 (46%), Positives = 55/81 (67%)
Query: 279 LRTYFTVGKKEIRAWTIPNGTTAEQAAGIIHTDIKRGFIRALTISYKDFLLYKGEQGCKN 338
L YFT G+ E+R+WTI GT A QAAG+IHTD ++ F+ + Y+D YK E C+
Sbjct: 1 LINYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRA 60
Query: 339 AGKIRSEGKKYLVEDGDILNF 359
AGK ++GK+Y++E GDI ++
Sbjct: 61 AGKYLTKGKEYVMESGDIAHW 81
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 86.9 bits (214), Expect = 6e-21
Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 31/208 (14%)
Query: 6 GLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFP 65
GL+G P+VGKSTL + ++ K +Y F T+ PN+G++E D R
Sbjct: 5 GLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRS-------------- 50
Query: 66 AIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDA 125
+ D+ GL+ GA +G GLG++FL HI T +++HVI + + +
Sbjct: 51 --FVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQEL 108
Query: 126 EVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMS-LN 184
+ E+ K + + L+ L P+ +S +
Sbjct: 109 SEYNLR-------LTERPQIIVANKMDMPEAA-----ENLEAFKEKLTDDYPVFPISAVT 156
Query: 185 NEELMSIKF--LNLLTIKPIIFVANVKE 210
E L + F N L P + + +E
Sbjct: 157 REGLRELLFEVANQLENTPEFPLYDEEE 184
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 81.6 bits (200), Expect = 5e-19
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 27/183 (14%)
Query: 6 GLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFP 65
GL+G PN GKS+L A+T+ YPF T+ PN+G++EV ++
Sbjct: 5 GLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEER-------------- 50
Query: 66 AIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDA 125
L DI G++ GAS+G+GLG +FL HI T ++++V+ + T +
Sbjct: 51 --FTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYD 108
Query: 126 EVIQT-----------ELILSDLAILEKYIDKENKKFFLKNEHSIELLKLLKRIIFNLNK 174
+ L + L + +E + + L LK + L +
Sbjct: 109 PALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVR 168
Query: 175 SIP 177
S P
Sbjct: 169 STP 171
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 50.1 bits (118), Expect = 5e-08
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 4 KCG---LIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPD 48
CG ++G PNVGKSTL N L KIS + T I I
Sbjct: 4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG 51
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 48.8 bits (115), Expect = 1e-07
Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 16/114 (14%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKIS-AENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTK 61
L+ ++G PNVGKSTL N L + + P T + I + + ++
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDT----- 55
Query: 62 KIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHI 115
+ + + G+ + L I + +IV+ V+
Sbjct: 56 ---------AGVRSETNDLVERLGI-ERTLQEIEKADIVLFVLDASSPLDEEDR 99
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 48.9 bits (115), Expect = 1e-07
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 6 GLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPN 40
G NVGKSTL LT K+ P T +
Sbjct: 4 IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII 38
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 44.7 bits (104), Expect = 4e-06
Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 15/127 (11%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKIS-AENYPFCTIEPNIGIIEVPDKRLKHL------- 54
+K ++G PNVGKSTLFNA+ + + P T +P + + ++ +
Sbjct: 9 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 68
Query: 55 -------NNIVKTKKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCF 107
+ I+ D+ +V A++G ++ +A + E V+
Sbjct: 69 KSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFN 128
Query: 108 KDDKITH 114
K D + H
Sbjct: 129 KWDLVVH 135
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 44.0 bits (102), Expect = 5e-06
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNI 41
+K + G PN GKS+L NAL + + T +
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL 40
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 42.8 bits (99), Expect = 2e-05
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 6 GLIGLPNVGKSTLFNALTKLKIS-AENYPFCTIEPN 40
++G PNVGKSTLFN L K K + E+ T +P
Sbjct: 4 LIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPV 39
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 42.1 bits (97), Expect = 3e-05
Identities = 14/52 (26%), Positives = 19/52 (36%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHL 54
++ G N GKS+ N LT K A I + EV D +
Sbjct: 17 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD 68
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 41.6 bits (96), Expect = 4e-05
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 6 GLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPN 40
++G PNVGKSTL N L +K++ + T
Sbjct: 9 AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKR 43
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 76
Score = 38.2 bits (89), Expect = 9e-05
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 19/79 (24%)
Query: 281 TYFTVGKKEI--RAWTIPNGTTAEQAAGIIHTDIKRGFIRALTISYKDFLLYKGEQGCKN 338
T + + + G+T A +HTD+ +GF+ N
Sbjct: 10 NKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFL-----------------YAIN 52
Query: 339 AGKIRSEGKKYLVEDGDIL 357
A R G+ Y ++ DI+
Sbjct: 53 ARTKRRVGEDYELQFNDIV 71
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 39.0 bits (90), Expect = 2e-04
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLK 52
K LIG VGK+ L T+ ++ I +E+ +++K
Sbjct: 6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVK 55
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 38.9 bits (89), Expect = 3e-04
Identities = 16/168 (9%), Positives = 46/168 (27%), Gaps = 7/168 (4%)
Query: 7 LIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFPA 66
L+G+ GKS + + + +A + L + + + A
Sbjct: 11 LMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDA 70
Query: 67 IIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDAE 126
+ + + L N+ ++ D + + +
Sbjct: 71 AFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQ 130
Query: 127 VIQTELILSDLAILEKYIDKENKKFFLKNEHSIELLKLLKRIIFNLNK 174
++ + L++ E + + +E ++ I + K
Sbjct: 131 MLV-----TQFETLQEPGADETDVLVVDIDQPLE--GVVASTIEVIKK 171
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 38.2 bits (88), Expect = 5e-04
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLK 52
+K LIG VGKS L + K + I+ I +++ K++K
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVK 52
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 37.8 bits (87), Expect = 6e-04
Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 22/132 (16%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKK 62
K LIG VGK+ + ++ ++ I+ I IE+ KR+K
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIK---------- 56
Query: 63 IFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPI 122
+++ D AG E A+ R ++ V + +I I I
Sbjct: 57 -----LQIWDTAGQ-------ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNI 104
Query: 123 HDAEVIQTELIL 134
+ E ++
Sbjct: 105 EEHASADVEKMI 116
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 38.1 bits (87), Expect = 7e-04
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 7 LIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKH 53
+GL + GK+ LF L + + +I + I +V + R
Sbjct: 5 FVGLCDSGKTLLFVRLLTGQYR-DTQT--SITDSSAIYKVNNNRGNS 48
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 37.5 bits (86), Expect = 0.001
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLK 52
K LIG VGKS L + T+ + + E+ +E I+V K +K
Sbjct: 5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 54
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 37.3 bits (85), Expect = 0.001
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Query: 7 LIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTK 61
+ G N GK++L LT P + + + + ++ K
Sbjct: 8 IAGPQNSGKTSLLTLLTT----DSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVK 58
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 36.4 bits (83), Expect = 0.002
Identities = 20/121 (16%), Positives = 36/121 (29%), Gaps = 22/121 (18%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKK 62
K +IG +VGK++ + I+ + I DKR+K
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIK---------- 55
Query: 63 IFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPI 122
+++ D AG E A+ R I + ++ + I
Sbjct: 56 -----LQIWDTAGQ-------ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI 103
Query: 123 H 123
Sbjct: 104 K 104
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 36.2 bits (82), Expect = 0.002
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 1 MNLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49
+ +K ++G VGKS++ K + + ++ I+V D+
Sbjct: 1 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDE 49
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 36.2 bits (82), Expect = 0.003
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTI 37
++ L+GL GK+T N + + + + P
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGF 37
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 36.0 bits (82), Expect = 0.003
Identities = 14/50 (28%), Positives = 20/50 (40%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLK 52
LK +IG VGKS+L T E ++ + I V + K
Sbjct: 8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAK 57
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 35.6 bits (81), Expect = 0.003
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKH 53
K +IG VGKS L + T+ K A+ +E IIEV +++K
Sbjct: 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKL 55
Score = 25.6 bits (55), Expect = 8.0
Identities = 9/47 (19%), Positives = 20/47 (42%)
Query: 201 PIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEEEISDL 247
II + N + + ++ ++ K +A + + AK E + D
Sbjct: 111 VIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDA 157
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 35.4 bits (80), Expect = 0.004
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEV 46
K +GL N GK+TL + L N T++P
Sbjct: 2 KLLFLGLDNAGKTTLLHMLK-------NDRLATLQPTWHPTSE 37
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 35.0 bits (79), Expect = 0.005
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKIS 28
L+ ++GL N GK+T+ +
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGEDVD 28
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 35.6 bits (81), Expect = 0.006
Identities = 22/194 (11%), Positives = 48/194 (24%), Gaps = 19/194 (9%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISA-ENYPFCTIEPNIGIIEVPDKRL---------- 51
L ++G VGKS+ N++ ++ + + P + L
Sbjct: 33 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 92
Query: 52 ------KHLNNIVKTKKIFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIR 105
LN I + L + L K + I I
Sbjct: 93 GGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIV 152
Query: 106 CF--KDDKITHISGEINPIHDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELLK 163
+++ S ++ + + ++N
Sbjct: 153 ALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKDAQASDIPVVLIENSGRCNKND 212
Query: 164 LLKRIIFNLNKSIP 177
++++ N IP
Sbjct: 213 SDEKVLPNGIAWIP 226
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 34.7 bits (78), Expect = 0.008
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKIS 28
++ ++GL GK+T+ L ++
Sbjct: 6 MRILILGLDGAGKTTILYRLQVGEVV 31
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 34.7 bits (78), Expect = 0.009
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 6 GLIGLPNVGKSTLFNALTKLKISAENYPFCT 36
L G NVGKS+ N+L K A
Sbjct: 27 ALAGRSNVGKSSFINSLINRKNLARTSSKPG 57
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 34.2 bits (77), Expect = 0.011
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEV 46
++ ++GL GK+T+ L +I + +
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 44
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 34.1 bits (77), Expect = 0.014
Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 12/113 (10%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKK 62
+K +G VGK+T T K + + I+ + + + K
Sbjct: 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQ-----GPNGSSGK 60
Query: 63 IFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHI 115
F ++L D AG E + A R+ + + ++
Sbjct: 61 AFKVHLQLWDTAGQ-------ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV 106
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 33.7 bits (76), Expect = 0.017
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLK 52
K LIG VGKS L + + + ++ I +E+ K +K
Sbjct: 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVK 56
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 33.7 bits (76), Expect = 0.018
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLK 52
K +IG GKS L + + K ++ +E II V K +K
Sbjct: 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVK 55
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 33.5 bits (75), Expect = 0.019
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPD 48
LK ++G VGK++L + K S + + + V
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDG 48
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 33.1 bits (74), Expect = 0.026
Identities = 10/50 (20%), Positives = 20/50 (40%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLK 52
K +IG NVGK+ L + ++ +++ +R+K
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIK 52
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 32.7 bits (73), Expect = 0.041
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKH 53
LK ++G VGK++L N K S + + + V D+ +
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTM 53
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 32.2 bits (72), Expect = 0.047
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCT 36
K L+G VGK+ L A +
Sbjct: 7 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTV 40
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 32.6 bits (73), Expect = 0.048
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 7 LIGLPNVGKSTLFNALTK 24
++GLP GK+ + LT+
Sbjct: 7 MVGLPARGKTYISKKLTR 24
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 32.2 bits (72), Expect = 0.057
Identities = 14/68 (20%), Positives = 27/68 (39%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKK 62
K +IG VGKS L T + + +E ++ + K++K ++
Sbjct: 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63
Query: 63 IFPAIIKL 70
F +I +
Sbjct: 64 SFRSITRS 71
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 32.8 bits (74), Expect = 0.060
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAE 30
L + G GKS+ N L + E
Sbjct: 57 LNVAVTGETGSGKSSFINTLRGIGNEEE 84
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 31.9 bits (71), Expect = 0.061
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 1 MNLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNN 56
+ K ++G GK+ L +K + P T+ N D + L
Sbjct: 1 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVP--TVFENYVADIEVDGKQVELAL 54
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 31.9 bits (71), Expect = 0.068
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 2 NLKCGLIGLPNVGKSTLFNALTK 24
++ L+GL N GK+TL L
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLAS 38
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 31.3 bits (69), Expect = 0.094
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPD 48
+ LIG VGKSTL N + S ++ E + D
Sbjct: 5 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVD 49
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 31.5 bits (70), Expect = 0.099
Identities = 10/51 (19%), Positives = 20/51 (39%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKH 53
K L+G VGK++L + K + ++ + + KR+
Sbjct: 4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNL 54
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b,
N-terminal (G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 31.6 bits (70), Expect = 0.11
Identities = 5/29 (17%), Positives = 15/29 (51%)
Query: 2 NLKCGLIGLPNVGKSTLFNALTKLKISAE 30
+ ++G + GK+TL + + +++
Sbjct: 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASR 33
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 30.9 bits (68), Expect = 0.14
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLK 52
+ K ++G +VGKS+L + + ++Y +I V +
Sbjct: 4 SRKIAILGYRSVGKSSLTIQFVEGQFV-DSYDPTIENTFTKLITVNGQEYH 53
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 30.7 bits (68), Expect = 0.15
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVP 47
K ++GL N GK+T+ + ++ + + I I
Sbjct: 16 HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTR 60
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 31.1 bits (69), Expect = 0.16
Identities = 35/243 (14%), Positives = 69/243 (28%), Gaps = 12/243 (4%)
Query: 5 CGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIF 64
+G GK+TL + +NY + + G+ E+P + + V ++I
Sbjct: 3 VVFVGTAGSGKTTLTGEF--GRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIM 60
Query: 65 PAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHD 124
+V + N++L I + T E H+
Sbjct: 61 REGYG--PNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLI-----DTPGQMETFLFHE 113
Query: 125 AEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELLKLLKRIIFNLNKSIPIRLMSLN 184
V E + L + YI + + LL + + + L
Sbjct: 114 FGVRLMENLPYPLVV---YISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLL 170
Query: 185 NEELMSIKFLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEEEI 244
+EE I + + + + + ++ + AK E
Sbjct: 171 SEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGF 230
Query: 245 SDL 247
DL
Sbjct: 231 EDL 233
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 30.7 bits (68), Expect = 0.16
Identities = 14/67 (20%), Positives = 25/67 (37%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKK 62
K L+G VGKS+L N K + + +E +EV + ++
Sbjct: 7 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66
Query: 63 IFPAIIK 69
F ++
Sbjct: 67 RFRSLRT 73
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 30.8 bits (68), Expect = 0.16
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDK 49
K ++G VGKS L + +Y + I V
Sbjct: 8 KLVVVGGGGVGKSALTIQFIQSYFV-SDYDPTIEDSYTKICSVDGI 52
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 30.8 bits (68), Expect = 0.16
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 2 NLKCGLIGLPNVGKSTLFNALTK 24
K +GL N GK+TL + L
Sbjct: 13 TGKLVFLGLDNAGKTTLLHMLKD 35
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 30.4 bits (67), Expect = 0.18
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFC 35
+K L+G VGKS++ + P
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTI 36
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 30.8 bits (68), Expect = 0.18
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 2 NLKCGLIGLPNVGKSTLFNALTKLKISA 29
N+ G+ G + GK+TL LT++ ++
Sbjct: 5 NINLGIFGHIDHGKTTLSKVLTEIASTS 32
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 30.4 bits (67), Expect = 0.18
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPN 40
LK L+G VGKS++ + P
Sbjct: 4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFM 42
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 30.4 bits (67), Expect = 0.21
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFC 35
+KC ++G VGK+ L + T E P
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 38
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 30.4 bits (67), Expect = 0.24
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 2 NLKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVK 59
+KC ++G VGK+ L + T K +E P T+ N + + L
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVP--TVFDNYAVTVMIGGEPYTLGLFDT 58
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 30.0 bits (66), Expect = 0.29
Identities = 11/50 (22%), Positives = 17/50 (34%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKH 53
K L+G VGKS+L K + + + D +K
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKF 57
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 30.0 bits (66), Expect = 0.30
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLN 55
+K + G VGKS L + E P T+E D + +
Sbjct: 3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDP--TLESTYRHQATIDDEVVSME 53
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 29.9 bits (66), Expect = 0.31
Identities = 8/50 (16%), Positives = 18/50 (36%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKH 53
K +G +VGK++L I+ + + D+ ++
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRL 51
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 29.5 bits (65), Expect = 0.37
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFC 35
K ++G VGKS L + + P
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK 37
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 29.6 bits (65), Expect = 0.39
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFC 35
LKC ++G VGK+ L + E P
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV 42
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 29.3 bits (64), Expect = 0.40
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKISAE 30
K L+G P VGKS L ++ E
Sbjct: 3 KVLLLGAPGVGKSALARIFGGVEDGPE 29
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 29.2 bits (64), Expect = 0.52
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIE 38
K L+G GK+T + + +E
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 39
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 28.8 bits (63), Expect = 0.71
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 2 NLKCGLIGLPNVGKSTLFNALTK 24
+ + + G VGKS+L K
Sbjct: 2 DYRVAVFGAGGVGKSSLVLRFVK 24
>d2edma1 b.170.1.1 (A:41-201) Envelope protein VP26 {White spot
syndrome virus, WSSV [TaxId: 92652]}
Length = 161
Score = 28.6 bits (63), Expect = 0.74
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 193 FLNLLTIKPIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEE 242
+N +T++P + N+K N N + I + + I +I +C+K E+
Sbjct: 89 LINDITVRPTVIAGNIKGNTMSNTYFSSK-DIKSSSSKITLIDVCSKFED 137
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 28.4 bits (62), Expect = 0.79
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFC 35
K ++G VGKS L L + E P
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI 36
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 28.4 bits (62), Expect = 0.91
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLK 52
L+ ++GL GK+T+ +L+I TI N+ + + +L
Sbjct: 18 LRILILGLDGAGKTTILY---RLQIGEVVTTKPTIGFNVETLSYKNLKLN 64
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 28.4 bits (62), Expect = 1.0
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 7 LIGLPNVGKSTLFNALTK 24
L G + GKS + L
Sbjct: 8 LNGGSSAGKSGIVRCLQS 25
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 28.1 bits (61), Expect = 1.1
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 1 MNLKCGLIGLPNVGKSTLFNALTK 24
+ K ++G GK+ L + K
Sbjct: 1 VKCKIVVVGDSQCGKTALLHVFAK 24
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 28.0 bits (61), Expect = 1.2
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKH 53
K ++G VGKS L + E Y + +EV ++
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEVDCQQCML 53
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 28.7 bits (63), Expect = 1.2
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 1/101 (0%)
Query: 6 GLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFP 65
G+ G P GKST A L + E I + L + +
Sbjct: 58 GVTGTPGAGKSTFLEAFGML-LIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEA 116
Query: 66 AIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRC 106
A I+ V +G + GAS+ +++ +
Sbjct: 117 AFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGV 157
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 28.0 bits (61), Expect = 1.3
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPF 34
K ++G VGKS L + P
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPT 35
Score = 26.0 bits (56), Expect = 6.3
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 201 PIIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLEEEISDL 247
P+I V N + + + + + A P + AK + + +L
Sbjct: 110 PVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDEL 156
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 27.7 bits (60), Expect = 1.5
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFC 35
+ ++G VGKS L + + P
Sbjct: 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTI 38
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 27.6 bits (60), Expect = 1.5
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKL 25
+K + G P VGK+TL + +
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVER 23
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 27.6 bits (60), Expect = 2.0
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKK 62
LK L+G GKST + + + P GIIE P + +V
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRIIHG--------SGVPTTGIIEYPFDLQSVIFRMVDVGG 54
Query: 63 I 63
Sbjct: 55 Q 55
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 27.3 bits (59), Expect = 2.0
Identities = 5/19 (26%), Positives = 6/19 (31%)
Query: 6 GLIGLPNVGKSTLFNALTK 24
GK+TL L
Sbjct: 6 AFAAWSGTGKTTLLKKLIP 24
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 27.3 bits (59), Expect = 2.0
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFC 35
K ++G VGKS L + + P
Sbjct: 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI 37
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 27.6 bits (60), Expect = 2.1
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 9/44 (20%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEV 46
+K L+G GKST + + +P GI E
Sbjct: 3 VKILLLGAGESGKSTFLKQMRIIH---------GQDPTKGIHEY 37
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 27.2 bits (59), Expect = 2.2
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 3 LKCGLIGLPNVGKSTLFNALT 23
++ ++GL GK+T+ L
Sbjct: 13 MRILMLGLDAAGKTTILYKLK 33
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 27.4 bits (59), Expect = 2.3
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 7 LIGLPNVGKSTLFNALTK 24
L G N GK + AL
Sbjct: 11 LTGYMNSGKDAIARALQV 28
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 27.3 bits (59), Expect = 2.4
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 3 LKCGLIGLPNVGKSTLFNALTK 24
L+ G++G GKS+L +
Sbjct: 6 LRLGVLGDARSGKSSLIHRFLT 27
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 27.5 bits (60), Expect = 2.5
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 2 NLKCGLIGLPNVGKSTLFNALTKLKIS 28
++ +IG+PNVGKSTL N L K I+
Sbjct: 112 AIRALIIGIPNVGKSTLINRLAKKNIA 138
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 27.0 bits (59), Expect = 2.9
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 6/46 (13%)
Query: 7 LIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLK 52
L+G GKST+ + L + T +V
Sbjct: 11 LLGAGESGKSTIVKQMRILHVVL------TSGIFETKFQVDKVNFH 50
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 26.6 bits (57), Expect = 4.0
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 7 LIGLPNVGKSTLFNALTK 24
L GL GK+T+ AL +
Sbjct: 24 LTGLSGAGKTTVSMALEE 41
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 26.4 bits (58), Expect = 4.7
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 6 GLIGLPNVGKSTLFNALTKL 25
LIG GK+T +A+ L
Sbjct: 36 TLIGANGAGKTTTLSAIAGL 55
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 26.5 bits (58), Expect = 4.8
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 6 GLIGLPNVGKSTLFNALTKL 25
+IG GKSTL N +T
Sbjct: 34 LIIGPNGSGKSTLINVITGF 53
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 26.8 bits (58), Expect = 4.8
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 7 LIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNI 41
++G + GKS++ T P +
Sbjct: 31 VVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLV 65
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 26.5 bits (57), Expect = 5.0
Identities = 22/180 (12%), Positives = 44/180 (24%), Gaps = 20/180 (11%)
Query: 3 LKCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKK 62
+K L+G GKST+ + + E GI+E H K
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKIIH-----------EAGTGIVET------HFTFKDLHFK 45
Query: 63 IFPAIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPI 122
+F + + + + + + + + N
Sbjct: 46 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 105
Query: 123 HDAEVIQTELILSDLAILEKYIDKENKKFFLKNEHSIELLKLLKRII---FNLNKSIPIR 179
+ + EK + + S + I +LNK +
Sbjct: 106 WFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTK 165
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 26.4 bits (57), Expect = 5.1
Identities = 20/145 (13%), Positives = 42/145 (28%), Gaps = 15/145 (10%)
Query: 6 GLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNNIVKTKKIFP 65
G+ G+P VGKST +AL L + ++ V + +I+
Sbjct: 55 GITGVPGVGKSTTIDALGSL--------LTAAGHKVAVLAVDPSSTRTGGSIL------G 100
Query: 66 AIIKLVDIAGLVSGASKGEGLGNKFLAHIRETNIVIHVIRCFKDDKITHISGEINPIHDA 125
++ +A + + +T + + D I + +
Sbjct: 101 DKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETV-GVGQSET 159
Query: 126 EVIQTELILSDLAILEKYIDKENKK 150
V L + + + K
Sbjct: 160 AVADLTDFFLVLMLPGAGDELQGIK 184
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 26.2 bits (57), Expect = 5.2
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 13/56 (23%)
Query: 195 NLLTIKPIIFVANV---------KENGFKNNLLLDQLKIYAHNQNIPIIIICAKLE 241
NLL KP VANV K + ++D+ + A + +++ K++
Sbjct: 1 NLL-TKPH--VANVDQVILVVTVKMPET-STYIIDKFLVLAEKNELETVMVINKMD 52
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 26.2 bits (57), Expect = 5.5
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 11/51 (21%)
Query: 6 GLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLNN 56
G++G GK+T + L P+ G + D+ +
Sbjct: 35 GILGPSGAGKTTFMRIIAGL-----------DVPSTGELYFDDRLVASNGK 74
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 25.9 bits (55), Expect = 5.6
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 7 LIGLPNVGKSTLFNALTK 24
L+G GKST+ L +
Sbjct: 7 LVGPMGAGKSTIGRQLAQ 24
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 26.2 bits (57), Expect = 5.7
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 202 IIFVANVKENGFKNNLLLDQLKIYAHNQNIPIIIICAKLE 241
+ V + + F + LLD+ + +I II K++
Sbjct: 14 AVLVFSAVQPSF-STALLDRFLVLVEANDIQPIICITKMD 52
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 26.1 bits (56), Expect = 5.8
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 7 LIGLPNVGKSTLFNALTK 24
L G P GKST+ AL
Sbjct: 9 LSGHPGSGKSTIAEALAN 26
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 26.4 bits (58), Expect = 6.1
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
Query: 4 KCGLIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIEVPDKRLKHLN 55
G GKST+F+ L + +P G I + + + +++
Sbjct: 30 IIAFAGPSGGGKSTIFSLLERF-----------YQPTAGEITIDGQPIDNIS 70
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 25.8 bits (55), Expect = 6.8
Identities = 8/31 (25%), Positives = 8/31 (25%)
Query: 7 LIGLPNVGKSTLFNALTKLKISAENYPFCTI 37
IG P GKST N
Sbjct: 7 TIGCPGSGKSTWAREFIAKNPGFYNINRDDY 37
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 25.7 bits (55), Expect = 6.8
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 7 LIGLPNVGKSTLFNALTKLKISAENYPFCTIEPNIGIIE 45
L+GLP GKST+ L K A + I
Sbjct: 6 LVGLPGSGKSTIGRRLAK----ALGVGLLDTDVAIEQRT 40
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 25.6 bits (55), Expect = 7.8
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 7 LIGLPNVGKSTLFNALTK 24
+G P GKST
Sbjct: 19 AVGFPGAGKSTFIQEHLV 36
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 25.7 bits (56), Expect = 8.0
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 6 GLIGLPNVGKSTLFNALTKL 25
GLIG GK+T ++ L
Sbjct: 32 GLIGPNGAGKTTTLRIISTL 51
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 25.7 bits (56), Expect = 8.3
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 6/45 (13%)
Query: 6 GLIGLPNVGKSTLFNALTKL------KISAENYPFCTIEPNIGII 44
G +GK+TL ++ +I P ++ I +
Sbjct: 31 NFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFL 75
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.142 0.401
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,371,351
Number of extensions: 69036
Number of successful extensions: 430
Number of sequences better than 10.0: 1
Number of HSP's gapped: 419
Number of HSP's successfully gapped: 143
Length of query: 363
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 277
Effective length of database: 1,226,816
Effective search space: 339828032
Effective search space used: 339828032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.8 bits)