BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2405
(264 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TLC|A Chain A, Thymidylate Synthase Complexed With Dgmp And Folate Analog
1843u89
pdb|1TLC|B Chain B, Thymidylate Synthase Complexed With Dgmp And Folate Analog
1843u89
pdb|1TSD|A Chain A, Thymidylate Synthase Complex With 2'-deoxyuridine 5'-
Monophosphate (dump) And Folate Analog 1843u89
pdb|1TSD|B Chain B, Thymidylate Synthase Complex With 2'-deoxyuridine 5'-
Monophosphate (dump) And Folate Analog 1843u89
pdb|1DDU|A Chain A, E. Coli Thymidylate Synthase In Complex With Cb3717 And
2', 5'-Dideoxyuridine (Ddurd)
pdb|1DDU|B Chain B, E. Coli Thymidylate Synthase In Complex With Cb3717 And
2', 5'-Dideoxyuridine (Ddurd)
pdb|1TDU|A Chain A, E. Coli Thymidylate Synthase In Complex With Cb3717 And
2'- Deoxyuridine (durd)
pdb|1TDU|B Chain B, E. Coli Thymidylate Synthase In Complex With Cb3717 And
2'- Deoxyuridine (durd)
pdb|1AN5|A Chain A, E. Coli Thymidylate Synthase In Complex With Cb3717
pdb|1AN5|B Chain B, E. Coli Thymidylate Synthase In Complex With Cb3717
pdb|1AXW|A Chain A, E. Coli Thymidylate Synthase In Complex With Methotrexate
(Mtx) And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1AXW|B Chain B, E. Coli Thymidylate Synthase In Complex With Methotrexate
(Mtx) And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1BDU|A Chain A, E. Coli Thymidylate Synthase Complexed With Durd
pdb|1BID|A Chain A, E. Coli Thymidylate Synthase Complexed With Dump
pdb|1TJS|A Chain A, E. Coli Thymidylate Synthase
pdb|1TRG|A Chain A, E. Coli Thymidylate Synthase In Symmetric Complex With
Cb3717 And 2'- Deoxyuridine 5'-Monophosphate (Dump)
pdb|1SYN|A Chain A, E. Coli Thymidylate Synthase In Complex With Bw1843u89 And
2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1SYN|B Chain B, E. Coli Thymidylate Synthase In Complex With Bw1843u89 And
2'-Deoxyuridine 5'-Monophosphate (Dump)
Length = 265
Score = 362 bits (928), Expect = e-100, Method: Compositional matrix adjust.
Identities = 164/264 (62%), Positives = 200/264 (75%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
M QYL M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+
Sbjct: 2 MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELL 61
Query: 61 WFLSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIK 120
WFL G T WD+WADENGDLGP+YG QWR+WPT G++IDQ++ V+ Q+K
Sbjct: 62 WFLQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLK 121
Query: 121 TDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIAS 180
DP+SRRIIVSAWNV ++ KM L PCH FQFYVA+ KLSCQLYQRS D+FLGLPFNIAS
Sbjct: 122 NDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIAS 181
Query: 181 YSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 240
Y+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I KP+S
Sbjct: 182 YALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIF 241
Query: 241 DYNFEDFQINSYNPQKSIYAPIAI 264
DY FEDF+I Y+P I AP+AI
Sbjct: 242 DYRFEDFEIEGYDPHPGIKAPVAI 265
>pdb|2BBQ|A Chain A, Structural Basis For Recognition Of Polyglutamyl Folates
By Thymidylate Synthase
pdb|2BBQ|B Chain B, Structural Basis For Recognition Of Polyglutamyl Folates
By Thymidylate Synthase
pdb|2KCE|A Chain A, Binding Of The Anticancer Drug Zd1694 To E. Coli
Thymidylate Synthase: Assessing Specificity And Affinity
pdb|2KCE|B Chain B, Binding Of The Anticancer Drug Zd1694 To E. Coli
Thymidylate Synthase: Assessing Specificity And Affinity
pdb|3TMS|A Chain A, Plastic Adaptation Toward Mutations In Proteins:
Structural Comparison Of Thymidylate Synthases
pdb|1AOB|A Chain A, E. Coli Thymidylate Synthase Complexed With Ddurd
Length = 264
Score = 362 bits (928), Expect = e-100, Method: Compositional matrix adjust.
Identities = 164/264 (62%), Positives = 200/264 (75%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
M QYL M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+
Sbjct: 1 MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELL 60
Query: 61 WFLSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIK 120
WFL G T WD+WADENGDLGP+YG QWR+WPT G++IDQ++ V+ Q+K
Sbjct: 61 WFLQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLK 120
Query: 121 TDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIAS 180
DP+SRRIIVSAWNV ++ KM L PCH FQFYVA+ KLSCQLYQRS D+FLGLPFNIAS
Sbjct: 121 NDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIAS 180
Query: 181 YSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 240
Y+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I KP+S
Sbjct: 181 YALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIF 240
Query: 241 DYNFEDFQINSYNPQKSIYAPIAI 264
DY FEDF+I Y+P I AP+AI
Sbjct: 241 DYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|2VET|A Chain A, Crystal Structure Of The Thymidylate Synthase K48q
Complexed With Dump
pdb|3B5B|A Chain A, Crystal Structure Of The Thymidylate Synthase K48q
pdb|3B5B|B Chain B, Crystal Structure Of The Thymidylate Synthase K48q
Length = 264
Score = 360 bits (925), Expect = e-100, Method: Compositional matrix adjust.
Identities = 163/264 (61%), Positives = 200/264 (75%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
M QYL M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TT++ H++SII+EL+
Sbjct: 1 MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTQRCHLRSIIHELL 60
Query: 61 WFLSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIK 120
WFL G T WD+WADENGDLGP+YG QWR+WPT G++IDQ++ V+ Q+K
Sbjct: 61 WFLQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLK 120
Query: 121 TDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIAS 180
DP+SRRIIVSAWNV ++ KM L PCH FQFYVA+ KLSCQLYQRS D+FLGLPFNIAS
Sbjct: 121 NDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIAS 180
Query: 181 YSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 240
Y+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I KP+S
Sbjct: 181 YALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIF 240
Query: 241 DYNFEDFQINSYNPQKSIYAPIAI 264
DY FEDF+I Y+P I AP+AI
Sbjct: 241 DYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|2TSC|A Chain A, Structure, Multiple Site Binding, And Segmental
Accomodation In Thymidylate Synthase On Binding DUMP AND
An Anti-Folate
pdb|2TSC|B Chain B, Structure, Multiple Site Binding, And Segmental
Accomodation In Thymidylate Synthase On Binding DUMP AND
An Anti-Folate
Length = 264
Score = 360 bits (923), Expect = e-100, Method: Compositional matrix adjust.
Identities = 163/264 (61%), Positives = 199/264 (75%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
M QYL M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+
Sbjct: 1 MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELL 60
Query: 61 WFLSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIK 120
WFL G T WD+WADENGDLGP+YG QWR+WPT G++IDQ++ V+ Q+K
Sbjct: 61 WFLQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLK 120
Query: 121 TDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIAS 180
DP+SRRIIVSAWNV ++ KM L PCH FQFYVA+ KLSCQLYQRS D+FLGLPFNIAS
Sbjct: 121 NDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIAS 180
Query: 181 YSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 240
Y+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I P+S
Sbjct: 181 YALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRAPESIF 240
Query: 241 DYNFEDFQINSYNPQKSIYAPIAI 264
DY FEDF+I Y+P I AP+AI
Sbjct: 241 DYRFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1KCE|A Chain A, E. Coli Thymidylate Synthase Mutant E58q In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1KCE|B Chain B, E. Coli Thymidylate Synthase Mutant E58q In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1TLS|A Chain A, Thymidylate Synthase Ternary Complex With Fdump And
Methylenetetrahydrofolate
pdb|1TLS|B Chain B, Thymidylate Synthase Ternary Complex With Fdump And
Methylenetetrahydrofolate
pdb|1F4B|A Chain A, Crystal Structure Of Escherichia Coli Thymidylate Synthase
pdb|1F4C|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase
Covalently Modified At C146 With
N-[tosyl-D-Prolinyl]amino-Ethanethiol
pdb|1F4C|B Chain B, Crystal Structure Of E. Coli Thymidylate Synthase
Covalently Modified At C146 With
N-[tosyl-D-Prolinyl]amino-Ethanethiol
pdb|1F4E|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Tosyl-D-Proline
pdb|1F4F|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Sp- 722
pdb|1F4F|B Chain B, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Sp- 722
pdb|1JTQ|A Chain A, E. Coli Ts Complex With Dump And The
Pyrrolo(2,3-D)pyrimidine-Based Antifolate Ly341770
pdb|1JTQ|B Chain B, E. Coli Ts Complex With Dump And The
Pyrrolo(2,3-D)pyrimidine-Based Antifolate Ly341770
pdb|1JTU|A Chain A, E. Coli Thymidylate Synthase In A Complex With Dump And
Ly338913, A Polyglutamylated
Pyrrolo(2,3-d)pyrimidine-based Antifolate
pdb|1JTU|B Chain B, E. Coli Thymidylate Synthase In A Complex With Dump And
Ly338913, A Polyglutamylated
Pyrrolo(2,3-d)pyrimidine-based Antifolate
pdb|1JUT|A Chain A, E. Coli Thymidylate Synthase Bound To Dump And Ly338529, A
Pyrrolo(2, 3-d)pyrimidine-based Antifolate
pdb|1JUT|B Chain B, E. Coli Thymidylate Synthase Bound To Dump And Ly338529, A
Pyrrolo(2, 3-d)pyrimidine-based Antifolate
pdb|1KZI|A Chain A, Crystal Structure Of EctsDUMPTHF COMPLEX
pdb|1KZI|B Chain B, Crystal Structure Of EctsDUMPTHF COMPLEX
pdb|2A9W|A Chain A, E. Coli Ts Complexed With Dump And Inhibitor Ga9
pdb|2A9W|B Chain B, E. Coli Ts Complexed With Dump And Inhibitor Ga9
pdb|2A9W|C Chain C, E. Coli Ts Complexed With Dump And Inhibitor Ga9
pdb|2A9W|D Chain D, E. Coli Ts Complexed With Dump And Inhibitor Ga9
pdb|2FTQ|A Chain A, E. Coli Thymidylate Synthase At 1.8 A Resolution
pdb|1TSN|A Chain A, Thymidylate Synthase Ternary Complex With Fdump And
Methylenetetrahydrofolate
pdb|3B9H|A Chain A, E. Coli Thymidylate Synthase Complexed With
5-Nitro-2'-Deoxy Uridine
pdb|3BHL|A Chain A, E.Coli Thymidylate Synthase Complexes With 5-No2dump And
Tetrahydrofolate At 1.4 A Resolution
pdb|3BHL|B Chain B, E.Coli Thymidylate Synthase Complexes With 5-No2dump And
Tetrahydrofolate At 1.4 A Resolution
pdb|3BHR|A Chain A, E. Coli Ts Complexed With 5-No2dump And Tetrahydrofolate
At 1.9 A Resolution (Space Group 152)
pdb|4IW5|A Chain A, Thymidylate Synthase Ternary Complex With Dump And Cb3717
pdb|4IW5|B Chain B, Thymidylate Synthase Ternary Complex With Dump And Cb3717
Length = 264
Score = 360 bits (923), Expect = e-100, Method: Compositional matrix adjust.
Identities = 163/262 (62%), Positives = 199/262 (75%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+WF
Sbjct: 3 QYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWF 62
Query: 63 LSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTD 122
L G T WD+WADENGDLGP+YG QWR+WPT G++IDQ++ V+ Q+K D
Sbjct: 63 LQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKND 122
Query: 123 PNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYS 182
P+SRRIIVSAWNV ++ KM L PCH FQFYVA+ KLSCQLYQRS D+FLGLPFNIASY+
Sbjct: 123 PDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYA 182
Query: 183 LLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDY 242
LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I KP+S DY
Sbjct: 183 LLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDY 242
Query: 243 NFEDFQINSYNPQKSIYAPIAI 264
FEDF+I Y+P I AP+AI
Sbjct: 243 RFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1EV5|A Chain A, Crystal Structure Analysis Of Ala167 Mutant Of Escherichia
Coli
Length = 264
Score = 359 bits (922), Expect = e-100, Method: Compositional matrix adjust.
Identities = 162/262 (61%), Positives = 199/262 (75%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+WF
Sbjct: 3 QYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRXHLRSIIHELLWF 62
Query: 63 LSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTD 122
L G T WD+WADENGDLGP+YG QWR+WPT G++IDQ++ V+ Q+K D
Sbjct: 63 LQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKND 122
Query: 123 PNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYS 182
P+SRRIIVSAWNV ++ KM L PCH FQFYVA+ KLSCQLYQR+ D+FLGLPFNIASY+
Sbjct: 123 PDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRAXDVFLGLPFNIASYA 182
Query: 183 LLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDY 242
LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I KP+S DY
Sbjct: 183 LLVHMMAQQXDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDY 242
Query: 243 NFEDFQINSYNPQKSIYAPIAI 264
FEDF+I Y+P I AP+AI
Sbjct: 243 RFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1EVG|A Chain A, Crystal Structure Analysis Of Cys167 Mutant Of Escherichia
Coli With Unmodified Catalytic Cysteine
Length = 264
Score = 359 bits (921), Expect = e-100, Method: Compositional matrix adjust.
Identities = 162/262 (61%), Positives = 199/262 (75%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+WF
Sbjct: 3 QYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRXHLRSIIHELLWF 62
Query: 63 LSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTD 122
L G T WD+WADENGDLGP+YG QWR+WPT G++IDQ++ V+ Q+K D
Sbjct: 63 LQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKND 122
Query: 123 PNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYS 182
P+SRRIIVSAWNV ++ KM L PCH FQFYVA+ KLSCQLYQR+ D+FLGLPFNIASY+
Sbjct: 123 PDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRTCDVFLGLPFNIASYA 182
Query: 183 LLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDY 242
LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I KP+S DY
Sbjct: 183 LLVHMMAQQXDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDY 242
Query: 243 NFEDFQINSYNPQKSIYAPIAI 264
FEDF+I Y+P I AP+AI
Sbjct: 243 RFEDFEIEGYDPHPGIKAPVAI 264
>pdb|2FTN|A Chain A, E. Coli Thymidylate Synthase Y94f Mutant
pdb|2FTO|X Chain X, Y94f Mutant Of Thymidylate Synthase Bound To
Thymidine-5'-Phosphate And 10-Propargyl-5,8-Dideazafolid
Acid
Length = 264
Score = 358 bits (920), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 162/262 (61%), Positives = 199/262 (75%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+WF
Sbjct: 3 QYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWF 62
Query: 63 LSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTD 122
L G T WD+WADENGDLGP++G QWR+WPT G++IDQ++ V+ Q+K D
Sbjct: 63 LQGDTNIAYLHENNVTIWDEWADENGDLGPVFGKQWRAWPTPDGRHIDQITTVLNQLKND 122
Query: 123 PNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYS 182
P+SRRIIVSAWNV ++ KM L PCH FQFYVA+ KLSCQLYQRS D+FLGLPFNIASY+
Sbjct: 123 PDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYA 182
Query: 183 LLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDY 242
LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I KP+S DY
Sbjct: 183 LLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDY 242
Query: 243 NFEDFQINSYNPQKSIYAPIAI 264
FEDF+I Y+P I AP+AI
Sbjct: 243 RFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1F4G|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Sp- 876
pdb|1F4G|B Chain B, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Sp- 876
Length = 264
Score = 358 bits (920), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 163/262 (62%), Positives = 198/262 (75%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+WF
Sbjct: 3 QYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWF 62
Query: 63 LSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTD 122
L G T WD+WADENGDLGP+YG QWR+WPT G++IDQ++ V+ Q+K D
Sbjct: 63 LQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKND 122
Query: 123 PNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYS 182
P+SRRIIVSAWNV ++ KM L PCH FQFYVA+ KLSCQLYQRS D+FLGLPFNIASY+
Sbjct: 123 PDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYA 182
Query: 183 LLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDY 242
LL+H+ A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I KP+S DY
Sbjct: 183 LLVHMXAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDY 242
Query: 243 NFEDFQINSYNPQKSIYAPIAI 264
FEDF+I Y+P I AP+AI
Sbjct: 243 RFEDFEIEGYDPHPGIKAPVAI 264
>pdb|2VF0|A Chain A, Crystal Structure Of The Thymidylate Synthase K48q
Complexed With 5no2dump And Bw1843u89
pdb|2VF0|B Chain B, Crystal Structure Of The Thymidylate Synthase K48q
Complexed With 5no2dump And Bw1843u89
Length = 264
Score = 358 bits (919), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 162/262 (61%), Positives = 199/262 (75%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TT++ H++SII+EL+WF
Sbjct: 3 QYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTQRCHLRSIIHELLWF 62
Query: 63 LSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTD 122
L G T WD+WADENGDLGP+YG QWR+WPT G++IDQ++ V+ Q+K D
Sbjct: 63 LQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKND 122
Query: 123 PNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYS 182
P+SRRIIVSAWNV ++ KM L PCH FQFYVA+ KLSCQLYQRS D+FLGLPFNIASY+
Sbjct: 123 PDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYA 182
Query: 183 LLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDY 242
LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I KP+S DY
Sbjct: 183 LLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDY 242
Query: 243 NFEDFQINSYNPQKSIYAPIAI 264
FEDF+I Y+P I AP+AI
Sbjct: 243 RFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1ZPR|A Chain A, E. Coli Thymidylate Synthase Mutant E58q In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1ZPR|B Chain B, E. Coli Thymidylate Synthase Mutant E58q In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
Length = 264
Score = 358 bits (919), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 162/262 (61%), Positives = 199/262 (75%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII++L+WF
Sbjct: 3 QYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHQLLWF 62
Query: 63 LSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTD 122
L G T WD+WADENGDLGP+YG QWR+WPT G++IDQ++ V+ Q+K D
Sbjct: 63 LQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKND 122
Query: 123 PNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYS 182
P+SRRIIVSAWNV ++ KM L PCH FQFYVA+ KLSCQLYQRS D+FLGLPFNIASY+
Sbjct: 123 PDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYA 182
Query: 183 LLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDY 242
LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I KP+S DY
Sbjct: 183 LLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDY 242
Query: 243 NFEDFQINSYNPQKSIYAPIAI 264
FEDF+I Y+P I AP+AI
Sbjct: 243 RFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1FFL|A Chain A, Crystal Structure Of The Apo-Thymidylate Synthase R166q
Mutant
pdb|1FWM|A Chain A, Crystal Structure Of The Thymidylate Synthase R166q Mutant
pdb|1FWM|B Chain B, Crystal Structure Of The Thymidylate Synthase R166q Mutant
Length = 264
Score = 358 bits (918), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 162/262 (61%), Positives = 199/262 (75%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+WF
Sbjct: 3 QYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWF 62
Query: 63 LSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTD 122
L G T WD+WADENGDLGP+YG QWR+WPT G++IDQ++ V+ Q+K D
Sbjct: 63 LQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKND 122
Query: 123 PNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYS 182
P+SRRIIVSAWNV ++ KM L PCH FQFYVA+ KLSCQLYQ+S D+FLGLPFNIASY+
Sbjct: 123 PDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQQSCDVFLGLPFNIASYA 182
Query: 183 LLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDY 242
LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I KP+S DY
Sbjct: 183 LLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDY 242
Query: 243 NFEDFQINSYNPQKSIYAPIAI 264
FEDF+I Y+P I AP+AI
Sbjct: 243 RFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1AIQ|A Chain A, Crystal Structure Of Thymidylate Synthase R126e Mutant
pdb|1AIQ|B Chain B, Crystal Structure Of Thymidylate Synthase R126e Mutant
pdb|1AJM|A Chain A, Crystal Structure Of Thymidylate Synthase R126e Mutant
Length = 264
Score = 358 bits (918), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 162/262 (61%), Positives = 198/262 (75%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+WF
Sbjct: 3 QYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWF 62
Query: 63 LSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTD 122
L G T WD+WADENGDLGP+YG QWR+WPT G++IDQ++ V+ Q+K D
Sbjct: 63 LQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKND 122
Query: 123 PNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYS 182
P+S RIIVSAWNV ++ KM L PCH FQFYVA+ KLSCQLYQRS D+FLGLPFNIASY+
Sbjct: 123 PDSERIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYA 182
Query: 183 LLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDY 242
LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I KP+S DY
Sbjct: 183 LLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDY 242
Query: 243 NFEDFQINSYNPQKSIYAPIAI 264
FEDF+I Y+P I AP+AI
Sbjct: 243 RFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1DNA|A Chain A, D221(169)n Mutant Does Not Promote Opening Of The Cofactor
Imidazolidine Ring
pdb|1DNA|B Chain B, D221(169)n Mutant Does Not Promote Opening Of The Cofactor
Imidazolidine Ring
pdb|1BJG|A Chain A, D221(169)n Mutant Does Not Promote Opening Of The Cofactor
Imidazolidine Ring
Length = 264
Score = 357 bits (917), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 162/262 (61%), Positives = 199/262 (75%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+WF
Sbjct: 3 QYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWF 62
Query: 63 LSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTD 122
L G T WD+WADENGDLGP+YG QWR+WPT G++IDQ++ V+ Q+K D
Sbjct: 63 LQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKND 122
Query: 123 PNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYS 182
P+SRRIIVSAWNV ++ KM L PCH FQFYVA+ KLSCQLYQRS ++FLGLPFNIASY+
Sbjct: 123 PDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCNVFLGLPFNIASYA 182
Query: 183 LLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDY 242
LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I KP+S DY
Sbjct: 183 LLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDY 242
Query: 243 NFEDFQINSYNPQKSIYAPIAI 264
FEDF+I Y+P I AP+AI
Sbjct: 243 RFEDFEIEGYDPHPGIKAPVAI 264
>pdb|3BFI|A Chain A, E. Coli Thymidylate Synthase Y209m Mutant Complexed With
5-nitro-dump
Length = 264
Score = 357 bits (917), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 162/262 (61%), Positives = 198/262 (75%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+WF
Sbjct: 3 QYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWF 62
Query: 63 LSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTD 122
L G T WD+WADENGDLGP+YG QWR+WPT G++IDQ++ V+ Q+K D
Sbjct: 63 LQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKND 122
Query: 123 PNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYS 182
P+SRRIIVSAWNV ++ KM L PCH FQFYVA+ KLSCQLYQRS D+FLGLPFNIASY+
Sbjct: 123 PDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYA 182
Query: 183 LLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDY 242
LL+H++A + L+VGDF+WTGGD HL NH+DQ QL R P LP L I KP+S DY
Sbjct: 183 LLVHMMAQQCDLEVGDFVWTGGDTHLMSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDY 242
Query: 243 NFEDFQINSYNPQKSIYAPIAI 264
FEDF+I Y+P I AP+AI
Sbjct: 243 RFEDFEIEGYDPHPGIKAPVAI 264
>pdb|2G8M|A Chain A, Escherichia Coli Thymidylate Synthase Y209w In Complex
With Substrate, Dump, And A Cofactor Analog, Cb3717
pdb|2G8M|B Chain B, Escherichia Coli Thymidylate Synthase Y209w In Complex
With Substrate, Dump, And A Cofactor Analog, Cb3717
pdb|2G8X|A Chain A, Escherichia Coli Y209w Apoprotein
pdb|2G8X|B Chain B, Escherichia Coli Y209w Apoprotein
pdb|4GEV|A Chain A, E. Coli Thymidylate Synthase Y209w Variant In Complex With
Substrate And A Cofactor Analog
pdb|4GEV|B Chain B, E. Coli Thymidylate Synthase Y209w Variant In Complex With
Substrate And A Cofactor Analog
Length = 264
Score = 357 bits (917), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 162/262 (61%), Positives = 199/262 (75%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+WF
Sbjct: 3 QYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWF 62
Query: 63 LSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTD 122
L G T WD+WADENGDLGP+YG QWR+WPT G++IDQ++ V+ Q+K D
Sbjct: 63 LQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKND 122
Query: 123 PNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYS 182
P+SRRIIVSAWNV ++ KM L PCH FQFYVA+ KLSCQLYQRS D+FLGLPFNIASY+
Sbjct: 123 PDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYA 182
Query: 183 LLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDY 242
LL+H++A + L+VGDF+WTGGD HL+ NH+DQ QL R P LP L I KP+S DY
Sbjct: 183 LLVHMMAQQCDLEVGDFVWTGGDTHLWSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDY 242
Query: 243 NFEDFQINSYNPQKSIYAPIAI 264
FEDF+I Y+P I AP+AI
Sbjct: 243 RFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1BQ1|A Chain A, E. Coli Thymidylate Synthase Mutant N177a In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1BQ1|B Chain B, E. Coli Thymidylate Synthase Mutant N177a In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1BQ2|A Chain A, E. Coli Thymidylate Synthase Mutant N177a
Length = 264
Score = 357 bits (916), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 162/262 (61%), Positives = 198/262 (75%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+WF
Sbjct: 3 QYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWF 62
Query: 63 LSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTD 122
L G T WD+WADENGDLGP+YG QWR+WPT G++IDQ++ V+ Q+K D
Sbjct: 63 LQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKND 122
Query: 123 PNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYS 182
P+SRRIIVSAWNV ++ KM L PCH FQFYVA+ KLSCQLYQRS D+FLGLPF IASY+
Sbjct: 123 PDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFAIASYA 182
Query: 183 LLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDY 242
LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I KP+S DY
Sbjct: 183 LLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDY 242
Query: 243 NFEDFQINSYNPQKSIYAPIAI 264
FEDF+I Y+P I AP+AI
Sbjct: 243 RFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1JG0|A Chain A, Crystal Structure Of Escherichia Coli Thymidylate Synthase
Complexed With 2'-Deoxyuridine-5'-Monophosphate And
N,O-Didansyl-L-Tyrosine
pdb|1JG0|B Chain B, Crystal Structure Of Escherichia Coli Thymidylate Synthase
Complexed With 2'-Deoxyuridine-5'-Monophosphate And
N,O-Didansyl-L-Tyrosine
Length = 264
Score = 356 bits (913), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 162/262 (61%), Positives = 197/262 (75%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL M+ V + G +K D TG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+WF
Sbjct: 3 QYLELMQKVLDEGTQKNDATGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWF 62
Query: 63 LSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTD 122
L G T WD+WADENGDLGP+YG QWR+WPT G +IDQ++ V+ Q+K D
Sbjct: 63 LQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGAHIDQITTVLNQLKND 122
Query: 123 PNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYS 182
P+SRRIIVSAWNV ++ KM L PCH FQFYVA+ KLSCQLYQRS D+FLGLPFNIASY+
Sbjct: 123 PDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYA 182
Query: 183 LLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDY 242
LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I KP+S DY
Sbjct: 183 LLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDY 242
Query: 243 NFEDFQINSYNPQKSIYAPIAI 264
FEDF+I Y+P I AP+AI
Sbjct: 243 RFEDFEIEGYDPHPGIKAPVAI 264
>pdb|3BGX|A Chain A, E. Coli Thymidylate Synthase C146s Mutant Complexed With
Dtmp And Mtf
pdb|1TYS|A Chain A, Water-Mediated Substrate(Slash)product Discrimination: The
Product Complex Of Thymidylate Synthase At 1.83
Angstroms
Length = 264
Score = 356 bits (913), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 162/262 (61%), Positives = 198/262 (75%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+WF
Sbjct: 3 QYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWF 62
Query: 63 LSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTD 122
L G T WD+WADENGDLGP+YG QWR+WPT G++IDQ++ V+ Q+K D
Sbjct: 63 LQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKND 122
Query: 123 PNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYS 182
P+SRRIIVSAWNV ++ KM L P H FQFYVA+ KLSCQLYQRS D+FLGLPFNIASY+
Sbjct: 123 PDSRRIIVSAWNVGELDKMALAPSHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYA 182
Query: 183 LLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDY 242
LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I KP+S DY
Sbjct: 183 LLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDY 242
Query: 243 NFEDFQINSYNPQKSIYAPIAI 264
FEDF+I Y+P I AP+AI
Sbjct: 243 RFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1EVF|A Chain A, Crystal Structure Analysis Of Cys167 Mutant Of Escherichia
Coli
Length = 264
Score = 356 bits (913), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 161/262 (61%), Positives = 198/262 (75%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+WF
Sbjct: 3 QYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRXHLRSIIHELLWF 62
Query: 63 LSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTD 122
L G T WD+WADENGDLGP+YG QWR+WPT G++IDQ++ V+ Q+K D
Sbjct: 63 LQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKND 122
Query: 123 PNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYS 182
P+SRRIIVSAWNV ++ KM L P H FQFYVA+ KLSCQLYQR+ D+FLGLPFNIASY+
Sbjct: 123 PDSRRIIVSAWNVGELDKMALAPXHAFFQFYVADGKLSCQLYQRTXDVFLGLPFNIASYA 182
Query: 183 LLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDY 242
LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I KP+S DY
Sbjct: 183 LLVHMMAQQXDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDY 242
Query: 243 NFEDFQINSYNPQKSIYAPIAI 264
FEDF+I Y+P I AP+AI
Sbjct: 243 RFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1NCE|A Chain A, Crystal Structure Of A Ternary Complex Of E. Coli
Thymidylate Synthase D169c With Dump And The Antifolate
Cb3717
pdb|1NCE|B Chain B, Crystal Structure Of A Ternary Complex Of E. Coli
Thymidylate Synthase D169c With Dump And The Antifolate
Cb3717
Length = 264
Score = 356 bits (913), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 162/262 (61%), Positives = 198/262 (75%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+WF
Sbjct: 3 QYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWF 62
Query: 63 LSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTD 122
L G T WD+WADENGDLGP+YG QWR+WPT G++IDQ++ V+ Q+K D
Sbjct: 63 LQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKND 122
Query: 123 PNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYS 182
P+SRRIIVSAWNV ++ KM L PCH FQFYVA+ KLSCQLYQRS +FLGLPFNIASY+
Sbjct: 123 PDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCCVFLGLPFNIASYA 182
Query: 183 LLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDY 242
LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I KP+S DY
Sbjct: 183 LLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDY 242
Query: 243 NFEDFQINSYNPQKSIYAPIAI 264
FEDF+I Y+P I AP+AI
Sbjct: 243 RFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1KZJ|A Chain A, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|B Chain B, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|C Chain C, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|D Chain D, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|E Chain E, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|F Chain F, Crystal Structure Of Ects W80g/dump/cb3717 Complex
Length = 264
Score = 355 bits (912), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 162/262 (61%), Positives = 198/262 (75%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+WF
Sbjct: 3 QYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWF 62
Query: 63 LSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTD 122
L G T D+WADENGDLGP+YG QWR+WPT G++IDQ++ V+ Q+K D
Sbjct: 63 LQGDTNIAYLHENNVTIGDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKND 122
Query: 123 PNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYS 182
P+SRRIIVSAWNV ++ KM L PCH FQFYVA+ KLSCQLYQRS D+FLGLPFNIASY+
Sbjct: 123 PDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYA 182
Query: 183 LLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDY 242
LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I KP+S DY
Sbjct: 183 LLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDY 242
Query: 243 NFEDFQINSYNPQKSIYAPIAI 264
FEDF+I Y+P I AP+AI
Sbjct: 243 RFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1F4D|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase C146s,
L143c Covalently Modified At C143 With
N-[tosyl-D-Prolinyl]amino- Ethanethiol
pdb|1F4D|B Chain B, Crystal Structure Of E. Coli Thymidylate Synthase C146s,
L143c Covalently Modified At C143 With
N-[tosyl-D-Prolinyl]amino- Ethanethiol
Length = 264
Score = 354 bits (909), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 161/262 (61%), Positives = 197/262 (75%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+WF
Sbjct: 3 QYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWF 62
Query: 63 LSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTD 122
L G T WD+WADENGDLGP+YG QWR+WPT G++IDQ++ V+ Q+K D
Sbjct: 63 LQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKND 122
Query: 123 PNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYS 182
P+SRRIIVSAWNV ++ KM P H FQFYVA+ KLSCQLYQRS D+FLGLPFNIASY+
Sbjct: 123 PDSRRIIVSAWNVGELDKMACAPSHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYA 182
Query: 183 LLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDY 242
LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I KP+S DY
Sbjct: 183 LLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDY 242
Query: 243 NFEDFQINSYNPQKSIYAPIAI 264
FEDF+I Y+P I AP+AI
Sbjct: 243 RFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1EV8|A Chain A, Crystal Structure Analysis Of Cys167 Mutant Of Escherichia
Coli
Length = 264
Score = 354 bits (908), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 161/262 (61%), Positives = 197/262 (75%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+WF
Sbjct: 3 QYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRXHLRSIIHELLWF 62
Query: 63 LSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTD 122
L G T WD+WADENGDLGP+YG QWR+WPT G++IDQ++ V+ Q+K D
Sbjct: 63 LQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKND 122
Query: 123 PNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYS 182
P+SRRIIVSAWNV ++ KM L P H FQFYVA+ KLSCQLYQR D+FLGLPFNIASY+
Sbjct: 123 PDSRRIIVSAWNVGELDKMALAPXHAFFQFYVADGKLSCQLYQRCXDVFLGLPFNIASYA 182
Query: 183 LLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDY 242
LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I KP+S DY
Sbjct: 183 LLVHMMAQQXDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDY 242
Query: 243 NFEDFQINSYNPQKSIYAPIAI 264
FEDF+I Y+P I AP+AI
Sbjct: 243 RFEDFEIEGYDPHPGIKAPVAI 264
>pdb|1QQQ|A Chain A, Crystal Structure Analysis Of Ser254 Mutant Of Escherichia
Coli Thymidylate Synthase
Length = 264
Score = 353 bits (907), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 161/262 (61%), Positives = 197/262 (75%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+WF
Sbjct: 3 QYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRXHLRSIIHELLWF 62
Query: 63 LSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTD 122
L G T WD+WADENGDLGP+YG QWR+WPT G++IDQ++ V+ Q+K D
Sbjct: 63 LQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKND 122
Query: 123 PNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYS 182
P+SRRIIVSAWNV ++ KM L P H FQFYVA+ KLSCQLYQRS D+FLGLPFNIASY+
Sbjct: 123 PDSRRIIVSAWNVGELDKMALAPXHAFFQFYVADGKLSCQLYQRSXDVFLGLPFNIASYA 182
Query: 183 LLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDY 242
LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I KP+S DY
Sbjct: 183 LLVHMMAQQXDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDY 242
Query: 243 NFEDFQINSYNPQKSIYAPIAI 264
FEDF+I Y+ I AP+AI
Sbjct: 243 RFEDFEIEGYDSHPGIKAPVAI 264
>pdb|3IX6|A Chain A, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
pdb|3IX6|B Chain B, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
Length = 360
Score = 338 bits (867), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 153/264 (57%), Positives = 196/264 (74%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
M YL+ ++HV + G+ + DRTG GT S+FGYQMRF+L++GFP+LTTKKLH++SII+EL+
Sbjct: 97 MRTYLDLLQHVLDHGVDRDDRTGTGTRSVFGYQMRFDLEEGFPVLTTKKLHLRSIIHELL 156
Query: 61 WFLSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIK 120
WFL G T WD+WADENGDLGP+YGYQWRSWP G++IDQ++ ++K +
Sbjct: 157 WFLKGDTNIAYLKENGVTIWDEWADENGDLGPVYGYQWRSWPAPDGRHIDQIANLLKMLH 216
Query: 121 TDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIAS 180
T+P SRR+IVSAWN + + +M LPPCH LFQFYVAN +LSCQLYQRSADIFLG+PFNIAS
Sbjct: 217 TNPQSRRLIVSAWNPALVDEMALPPCHCLFQFYVANGRLSCQLYQRSADIFLGVPFNIAS 276
Query: 181 YSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 240
Y+LL +IA TGLK G+FI T GD H+Y NH +QAR QL R P LP + I K
Sbjct: 277 YALLTMMIAQVTGLKPGEFIHTLGDAHIYSNHFEQARLQLTRTPKKLPVMHINPDVKDLF 336
Query: 241 DYNFEDFQINSYNPQKSIYAPIAI 264
+ FEDF+++ Y +I APIA+
Sbjct: 337 AFRFEDFRLDGYEADPTIKAPIAV 360
>pdb|3QJ7|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
Thymidylate Synthase (Thya) Bound To Dump
pdb|3QJ7|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
Thymidylate Synthase (Thya) Bound To Dump
pdb|3QJ7|C Chain C, Crystal Structure Of The Mycobacterium Tuberculosis
Thymidylate Synthase (Thya) Bound To Dump
pdb|3QJ7|D Chain D, Crystal Structure Of The Mycobacterium Tuberculosis
Thymidylate Synthase (Thya) Bound To Dump
Length = 264
Score = 328 bits (840), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 147/264 (55%), Positives = 190/264 (71%), Gaps = 1/264 (0%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
M Y + +R V +G K DRTG GT S+FG QMR++L GFPLLTTKK+H KS+ YEL+
Sbjct: 2 MTPYEDLLRFVLETGTPKSDRTGTGTRSLFGQQMRYDLSAGFPLLTTKKVHFKSVAYELL 61
Query: 61 WFLSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIK 120
WFL G + WD+WA + G+LGPIYG QWRSWP G++IDQ+S + ++
Sbjct: 62 WFLRGDSNIGWLHEHGVTIWDEWASDTGELGPIYGVQWRSWPAPSGEHIDQISAALDLLR 121
Query: 121 TDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIAS 180
TDP+SRRIIVSAWNV +I +M LPPCH FQFYVA+ +LSCQLYQRSAD+FLG+PFNIAS
Sbjct: 122 TDPDSRRIIVSAWNVGEIERMALPPCHAFFQFYVADGRLSCQLYQRSADLFLGVPFNIAS 181
Query: 181 YSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 240
Y+LL H++A + GL VG+FIWTGGDCH+Y NH++Q R QL R P P L +L S
Sbjct: 182 YALLTHMMAAQAGLSVGEFIWTGGDCHIYDNHVEQVRLQLSREPRPYPKL-LLADRDSIF 240
Query: 241 DYNFEDFQINSYNPQKSIYAPIAI 264
+Y +ED + +Y+P +I AP+A+
Sbjct: 241 EYTYEDIVVKNYDPHPAIKAPVAV 264
>pdb|4F2V|A Chain A, Crystal Structure Of De Novo Designed Serine Hydrolase,
Northeast Structural Genomics Consortium (Nesg) Target
Or165
pdb|4F2V|B Chain B, Crystal Structure Of De Novo Designed Serine Hydrolase,
Northeast Structural Genomics Consortium (Nesg) Target
Or165
Length = 272
Score = 320 bits (820), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 150/262 (57%), Positives = 184/262 (70%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL + V + G +K DRTG GTLSIFG+Q RFNLQ GFPL+TTK+ H++SII+ L+WF
Sbjct: 3 QYLELXQKVLDEGTQKNDRTGTGTLSIFGHQXRFNLQDGFPLVTTKRCHLRSIIHLLLWF 62
Query: 63 LSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTD 122
L G T D+WADENGDLGP++G QWR+WPT G++IDQ++ V+ Q+K D
Sbjct: 63 LQGDTNIAYLHENNVTILDEWADENGDLGPVHGKQWRAWPTPDGRHIDQITTVLNQLKND 122
Query: 123 PNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYS 182
P+SRRIIVSAWNV ++ K P H FQFYVA+ KLSCQLY RS D+FL LPF IAS +
Sbjct: 123 PDSRRIIVSAWNVGELDKXANAPSHAFFQFYVADGKLSCQLYARSEDVFLSLPFAIASGA 182
Query: 183 LLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDY 242
LL+H A + L+VGDF+ TGGD HLY NH DQ QL R P LP L I KP+S DY
Sbjct: 183 LLVHXXAQQCDLEVGDFVXTGGDTHLYSNHXDQTHLQLSREPRPLPKLIIKRKPESIFDY 242
Query: 243 NFEDFQINSYNPQKSIYAPIAI 264
FEDF+I Y+P I AP+AI
Sbjct: 243 RFEDFEIEGYDPHPGIKAPVAI 264
>pdb|3UWL|A Chain A, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
pdb|3UWL|C Chain C, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
Length = 315
Score = 285 bits (729), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 145/311 (46%), Positives = 181/311 (58%), Gaps = 50/311 (16%)
Query: 4 YLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFL 63
YL + + G K DRTG GT S+FGYQMRF+L KGFPLLTTK++ I EL+WFL
Sbjct: 5 YLALGKKILEEGHFKEDRTGTGTYSLFGYQMRFDLAKGFPLLTTKRVPFGLIKSELLWFL 64
Query: 64 SGSTXXXXXXXXXXXXWDQWADEN------------------------------------ 87
G T WD+WA E
Sbjct: 65 KGDTNIRYLLERNNHIWDEWAFERYVKSADYQGPDMTDFGHRVLQDPAFAEQYKEEHQKF 124
Query: 88 --------------GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAW 133
G+LG IYG QWR W T G +IDQL+ VI+ IKT+P+SRR+IVSAW
Sbjct: 125 CDAILNDAEFAEKYGELGNIYGAQWRHWETKDGSFIDQLANVIEMIKTNPDSRRLIVSAW 184
Query: 134 NVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETG 193
N D+ M LPPCH +FQFYV KLSCQLYQRSAD+FLG+PFNIASY+LL H+IAHETG
Sbjct: 185 NPEDVPSMALPPCHTMFQFYVNEGKLSCQLYQRSADVFLGVPFNIASYALLTHLIAHETG 244
Query: 194 LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYN 253
L+VG+F+ T GD HLY NH++Q ++QL R S P L + S D++ ED ++ Y+
Sbjct: 245 LEVGEFVHTLGDAHLYQNHVEQMQEQLSREVRSFPTLVLNPDKASVFDFDMEDIKVEGYD 304
Query: 254 PQKSIYAPIAI 264
P +I APIA+
Sbjct: 305 PHPTIKAPIAV 315
>pdb|3UWL|B Chain B, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
pdb|3UWL|D Chain D, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
Length = 315
Score = 281 bits (719), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 144/311 (46%), Positives = 180/311 (57%), Gaps = 50/311 (16%)
Query: 4 YLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFL 63
YL + + G K DRTG GT S+FGYQMRF+L KGFPLLTTK++ I EL+WFL
Sbjct: 5 YLALGKKILEEGHFKEDRTGTGTYSLFGYQMRFDLAKGFPLLTTKRVPFGLIKSELLWFL 64
Query: 64 SGSTXXXXXXXXXXXXWDQWADEN------------------------------------ 87
G T WD+WA E
Sbjct: 65 KGDTNIRYLLERNNHIWDEWAFERYVKSADYQGPDMTDFGHRVLQDPAFAEQYKEEHQKF 124
Query: 88 --------------GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAW 133
G+LG IYG QWR W T G +IDQL+ VI+ IKT+P+SRR+IVSAW
Sbjct: 125 CDAILNDAEFAEKYGELGNIYGAQWRHWETKDGSFIDQLANVIEMIKTNPDSRRLIVSAW 184
Query: 134 NVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETG 193
N D+ M LPP H +FQFYV KLSCQLYQRSAD+FLG+PFNIASY+LL H+IAHETG
Sbjct: 185 NPEDVPSMALPPXHTMFQFYVNEGKLSCQLYQRSADVFLGVPFNIASYALLTHLIAHETG 244
Query: 194 LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYN 253
L+VG+F+ T GD HLY NH++Q ++QL R S P L + S D++ ED ++ Y+
Sbjct: 245 LEVGEFVHTLGDAHLYQNHVEQMQEQLSREVRSFPTLVLNPDKASVFDFDMEDIKVEGYD 304
Query: 254 PQKSIYAPIAI 264
P +I APIA+
Sbjct: 305 PHPTIKAPIAV 315
>pdb|1LCA|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And Cb3717
pdb|1LCB|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dtmp And H2folate
pdb|1LCE|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And Ch2thf
pdb|1NJE|A Chain A, Thymidylate Synthase With 2'-Deoxycytidine
5'-Monophosphate (Dcmp)
pdb|1THY|A Chain A, Refined Structures Of Substrate-Bound And Phosphate-Bound
Thymidylate Synthase From Lactobacillus Casei
pdb|1TSL|A Chain A, L. Casei Thymidylate Synthase With Species Specific
Inhibitor
pdb|1TSM|A Chain A, L. Casei Thymidylate Synthase With Species Specific
Inhibitor
pdb|2TDM|A Chain A, Structure Of Thymidylate Synthase
pdb|4TMS|A Chain A, Plastic Adaptation Toward Mutations In Proteins:
Structural Comparison Of Thymidylate Synthases
pdb|3BNZ|A Chain A, Crystal Structure Of Thymidylate Synthase Ternary Complex
With Dump And 8a Inhibitor
pdb|3BYX|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And The Phtalimidic Derivative C00 In Multiple
Binding Modes
pdb|3BZ0|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And The Phtalimidic Derivative C00
pdb|3C06|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And The Phtalimidic Derivative 14c In Multiple
Binding Modes-Mode 1
pdb|3C0A|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And The Phtalimidic Derivative 14c In Multiple
Binding Modes-Mode 2
pdb|3IJZ|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And Pthalimidic Derivative 15c
pdb|3IK0|A Chain A, Lactobacillus Casei Thymidylate Synthase In Ternary
Complex With Dump And The Phtalimidic Derivative 7c1
pdb|3IK1|A Chain A, Lactobacillus Casei Thymidylate Synthase In Ternary
Complex With Dump And The Phtalimidic Derivative 20c
Length = 316
Score = 274 bits (701), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 145/311 (46%), Positives = 181/311 (58%), Gaps = 50/311 (16%)
Query: 4 YLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFL 63
YL+ + V + G K DRT GT SIFG+QMRF+L KGFPLLTTKK+ I EL+WFL
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 64 SGSTXXXXXXXXXXXXWDQWADEN------------------------------------ 87
G T WD+WA E
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 88 --------------GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAW 133
GDLG +YG QWR+W T +G IDQL VI+QIKT P SRR+IVSAW
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAW 185
Query: 134 NVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETG 193
N D+ M LPPCH L+QFYV + KLS QLYQRSADIFLG+PFNIASY+LL H++AHE G
Sbjct: 186 NPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECG 245
Query: 194 LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYN 253
L+VG+FI T GD HLY+NHLDQ ++QL R P P L + D++ +D ++ +Y+
Sbjct: 246 LEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYD 305
Query: 254 PQKSIYAPIAI 264
P +I AP+A+
Sbjct: 306 PYPAIKAPVAV 316
>pdb|2G86|A Chain A, L. Casei Thymidylate Synthase Y261f In Complex With
Substrate, Dump
Length = 316
Score = 273 bits (698), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 144/311 (46%), Positives = 181/311 (58%), Gaps = 50/311 (16%)
Query: 4 YLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFL 63
YL+ + V + G K DRT GT SIFG+QMRF+L KGFPLLTTKK+ I EL+WFL
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 64 SGSTXXXXXXXXXXXXWDQWADEN------------------------------------ 87
G T WD+WA E
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 88 --------------GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAW 133
GDLG +YG QWR+W T +G IDQL VI+QIKT P SRR+IVSAW
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAW 185
Query: 134 NVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETG 193
N D+ M LPPCH L+QFYV + KLS QLYQRSADIFLG+PFNIASY+LL H++AHE G
Sbjct: 186 NPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECG 245
Query: 194 LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYN 253
L+VG+FI T GD HL++NHLDQ ++QL R P P L + D++ +D ++ +Y+
Sbjct: 246 LEVGEFIHTFGDAHLFVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYD 305
Query: 254 PQKSIYAPIAI 264
P +I AP+A+
Sbjct: 306 PYPAIKAPVAV 316
>pdb|1TDA|A Chain A, Structures Of Thymidylate Synthase With A C-Terminal
Deletion: Role Of The C-Terminus In Alignment Of DUMP
AND CH2H4FOLATE
pdb|1TDB|A Chain A, Structures Of Thymidylate Synthase With A C-Terminal
Deletion: Role Of The C-Terminus In Alignment Of DUMP
AND CH2H4FOLATE
pdb|1TDC|A Chain A, Structures Of Thymidylate Synthase With A C-Terminal
Deletion: Role Of The C-Terminus In Alignment Of DUMP
AND CH2H4FOLATE
pdb|2TDD|A Chain A, Structures Of Thymidylate Synthase With A C-Terminal
Deletion: Role Of The C-Terminus In Alignment Of DUMP
AND CH2H4FOLATE
Length = 315
Score = 273 bits (698), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 145/310 (46%), Positives = 180/310 (58%), Gaps = 50/310 (16%)
Query: 4 YLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFL 63
YL+ + V + G K DRT GT SIFG+QMRF+L KGFPLLTTKK+ I EL+WFL
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 64 SGSTXXXXXXXXXXXXWDQWADEN------------------------------------ 87
G T WD+WA E
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 88 --------------GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAW 133
GDLG +YG QWR+W T +G IDQL VI+QIKT P SRR+IVSAW
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAW 185
Query: 134 NVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETG 193
N D+ M LPPCH L+QFYV + KLS QLYQRSADIFLG+PFNIASY+LL H++AHE G
Sbjct: 186 NPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECG 245
Query: 194 LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYN 253
L+VG+FI T GD HLY+NHLDQ ++QL R P P L + D++ +D ++ +Y+
Sbjct: 246 LEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYD 305
Query: 254 PQKSIYAPIA 263
P +I AP+A
Sbjct: 306 PYPAIKAPVA 315
>pdb|1VZA|A Chain A, Thymidylate Synthase E60d Mutant Binary Complex With 2'-
Deoxyuridine 5'-Monophosphate (Dump)
Length = 316
Score = 273 bits (698), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 144/311 (46%), Positives = 181/311 (58%), Gaps = 50/311 (16%)
Query: 4 YLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFL 63
YL+ + V + G K DRT GT SIFG+QMRF+L KGFPLLTTKK+ I +L+WFL
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSDLLWFL 65
Query: 64 SGSTXXXXXXXXXXXXWDQWADEN------------------------------------ 87
G T WD+WA E
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKAPEFAAVYHEEMAKF 125
Query: 88 --------------GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAW 133
GDLG +YG QWR+W T +G IDQL VI+QIKT P SRR+IVSAW
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAW 185
Query: 134 NVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETG 193
N D+ M LPPCH L+QFYV + KLS QLYQRSADIFLG+PFNIASY+LL H++AHE G
Sbjct: 186 NPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECG 245
Query: 194 LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYN 253
L+VG+FI T GD HLY+NHLDQ ++QL R P P L + D++ +D ++ +Y+
Sbjct: 246 LEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYD 305
Query: 254 PQKSIYAPIAI 264
P +I AP+A+
Sbjct: 306 PYPAIKAPVAV 316
>pdb|1VZB|A Chain A, L. Casei Thymidylate Synthase Mutant E60q Binary Complex
With Dump
pdb|1VZC|A Chain A, L. Casei Thymidylate Synthase Mutant E60q Binary Complex
With Fdump
pdb|1VZD|A Chain A, L. Casei Thymidylate Synthase Mutant E60q Ternary Complex
With Fdump And Cb3717
pdb|1VZE|A Chain A, L. Casei Thymidylate Synthase Mutant E60q Ternary Complex
With Dump And Cb3717
Length = 316
Score = 273 bits (698), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 144/311 (46%), Positives = 181/311 (58%), Gaps = 50/311 (16%)
Query: 4 YLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFL 63
YL+ + V + G K DRT GT SIFG+QMRF+L KGFPLLTTKK+ I +L+WFL
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSQLLWFL 65
Query: 64 SGSTXXXXXXXXXXXXWDQWADEN------------------------------------ 87
G T WD+WA E
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKAPEFAAVYHEEMAKF 125
Query: 88 --------------GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAW 133
GDLG +YG QWR+W T +G IDQL VI+QIKT P SRR+IVSAW
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAW 185
Query: 134 NVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETG 193
N D+ M LPPCH L+QFYV + KLS QLYQRSADIFLG+PFNIASY+LL H++AHE G
Sbjct: 186 NPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECG 245
Query: 194 LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYN 253
L+VG+FI T GD HLY+NHLDQ ++QL R P P L + D++ +D ++ +Y+
Sbjct: 246 LEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYD 305
Query: 254 PQKSIYAPIAI 264
P +I AP+A+
Sbjct: 306 PYPAIKAPVAV 316
>pdb|1TSY|A Chain A, Thymidylate Synthase R179k Mutant
pdb|1TSZ|A Chain A, Thymidylate Synthase R179k Mutant
Length = 316
Score = 273 bits (698), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 144/311 (46%), Positives = 181/311 (58%), Gaps = 50/311 (16%)
Query: 4 YLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFL 63
YL+ + V + G K DRT GT SIFG+QMRF+L KGFPLLTTKK+ I EL+WFL
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 64 SGSTXXXXXXXXXXXXWDQWADEN------------------------------------ 87
G T WD+WA E
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 88 --------------GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAW 133
GDLG +YG QWR+W T +G IDQL VI+QIKT P SR++IVSAW
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRKLIVSAW 185
Query: 134 NVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETG 193
N D+ M LPPCH L+QFYV + KLS QLYQRSADIFLG+PFNIASY+LL H++AHE G
Sbjct: 186 NPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECG 245
Query: 194 LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYN 253
L+VG+FI T GD HLY+NHLDQ ++QL R P P L + D++ +D ++ +Y+
Sbjct: 246 LEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYD 305
Query: 254 PQKSIYAPIAI 264
P +I AP+A+
Sbjct: 306 PYPAIKAPVAV 316
>pdb|1NJC|A Chain A, Thymidylate Synthase, Mutation, N229d With
2'-Deoxycytidine 5'- Monophosphate (Dcmp)
pdb|1NJD|A Chain A, Thymidylate Synthase, Mutation, N229d With 2'-Deoxyuridine
5'- Monophosphate (Dump)
Length = 316
Score = 273 bits (697), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 144/311 (46%), Positives = 181/311 (58%), Gaps = 50/311 (16%)
Query: 4 YLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFL 63
YL+ + V + G K DRT GT SIFG+QMRF+L KGFPLLTTKK+ I EL+WFL
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 64 SGSTXXXXXXXXXXXXWDQWADEN------------------------------------ 87
G T WD+WA E
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 88 --------------GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAW 133
GDLG +YG QWR+W T +G IDQL VI+QIKT P SRR+IVSAW
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAW 185
Query: 134 NVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETG 193
N D+ M LPPCH L+QFYV + KLS QLYQRSADIFLG+PF+IASY+LL H++AHE G
Sbjct: 186 NPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFDIASYALLTHLVAHECG 245
Query: 194 LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYN 253
L+VG+FI T GD HLY+NHLDQ ++QL R P P L + D++ +D ++ +Y+
Sbjct: 246 LEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYD 305
Query: 254 PQKSIYAPIAI 264
P +I AP+A+
Sbjct: 306 PYPAIKAPVAV 316
>pdb|1JMI|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
pdb|1TVW|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 272 bits (696), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 144/311 (46%), Positives = 181/311 (58%), Gaps = 50/311 (16%)
Query: 4 YLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFL 63
YL+ + V + G K DRT GT SIFG+QMRF+L KGFPLLTTKK+ I EL+WFL
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 64 SGSTXXXXXXXXXXXXWDQWADEN------------------------------------ 87
G T WD+WA E
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 88 --------------GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAW 133
GDLG +YG QWR+W T +G IDQL VI+QIKT P SRR+IVSAW
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAW 185
Query: 134 NVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETG 193
N D+ M LPPCH L+QFYV + KLS QLYQRSADIFLG+PF+IASY+LL H++AHE G
Sbjct: 186 NPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFSIASYALLTHLVAHECG 245
Query: 194 LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYN 253
L+VG+FI T GD HLY+NHLDQ ++QL R P P L + D++ +D ++ +Y+
Sbjct: 246 LEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYD 305
Query: 254 PQKSIYAPIAI 264
P +I AP+A+
Sbjct: 306 PYPAIKAPVAV 316
>pdb|1TSX|A Chain A, Thymidylate Synthase R179e Mutant
Length = 316
Score = 272 bits (696), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 144/311 (46%), Positives = 180/311 (57%), Gaps = 50/311 (16%)
Query: 4 YLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFL 63
YL+ + V + G K DRT GT SIFG+QMRF+L KGFPLLTTKK+ I EL+WFL
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 64 SGSTXXXXXXXXXXXXWDQWADEN------------------------------------ 87
G T WD+WA E
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 88 --------------GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAW 133
GDLG +YG QWR+W T +G IDQL VI+QIKT P SR +IVSAW
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRELIVSAW 185
Query: 134 NVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETG 193
N D+ M LPPCH L+QFYV + KLS QLYQRSADIFLG+PFNIASY+LL H++AHE G
Sbjct: 186 NPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECG 245
Query: 194 LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYN 253
L+VG+FI T GD HLY+NHLDQ ++QL R P P L + D++ +D ++ +Y+
Sbjct: 246 LEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYD 305
Query: 254 PQKSIYAPIAI 264
P +I AP+A+
Sbjct: 306 PYPAIKAPVAV 316
>pdb|1JMG|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 272 bits (695), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 144/311 (46%), Positives = 180/311 (57%), Gaps = 50/311 (16%)
Query: 4 YLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFL 63
YL+ + V + G K DRT GT SIFG+QMRF+L KGFPLLTTKK+ I EL+WFL
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 64 SGSTXXXXXXXXXXXXWDQWADEN------------------------------------ 87
G T WD+WA E
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 88 --------------GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAW 133
GDLG +YG QWR+W T +G IDQL VI+QIKT P SRR+IVSAW
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAW 185
Query: 134 NVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETG 193
N D+ M LPPCH L+QFYV + KLS QLYQRSADIFLG+PF IASY+LL H++AHE G
Sbjct: 186 NPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFGIASYALLTHLVAHECG 245
Query: 194 LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYN 253
L+VG+FI T GD HLY+NHLDQ ++QL R P P L + D++ +D ++ +Y+
Sbjct: 246 LEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYD 305
Query: 254 PQKSIYAPIAI 264
P +I AP+A+
Sbjct: 306 PYPAIKAPVAV 316
>pdb|1JMF|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
pdb|1TVU|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 272 bits (695), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 144/311 (46%), Positives = 180/311 (57%), Gaps = 50/311 (16%)
Query: 4 YLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFL 63
YL+ + V + G K DRT GT SIFG+QMRF+L KGFPLLTTKK+ I EL+WFL
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 64 SGSTXXXXXXXXXXXXWDQWADEN------------------------------------ 87
G T WD+WA E
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 88 --------------GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAW 133
GDLG +YG QWR+W T +G IDQL VI+QIKT P SRR+IVSAW
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAW 185
Query: 134 NVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETG 193
N D+ M LPPCH L+QFYV + KLS QLYQRSADIFLG+PF IASY+LL H++AHE G
Sbjct: 186 NPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFAIASYALLTHLVAHECG 245
Query: 194 LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYN 253
L+VG+FI T GD HLY+NHLDQ ++QL R P P L + D++ +D ++ +Y+
Sbjct: 246 LEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYD 305
Query: 254 PQKSIYAPIAI 264
P +I AP+A+
Sbjct: 306 PYPAIKAPVAV 316
>pdb|1HW4|A Chain A, Structure Of Thymidylate Synthase Suggests Advantages Of
Chemotherapy With Noncompetitive Inhibitors
Length = 355
Score = 272 bits (695), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 137/282 (48%), Positives = 177/282 (62%), Gaps = 20/282 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL ++H+ G++K DRTG GTLS+FG Q R++L+ FPLLTTK++ K ++ EL+WF
Sbjct: 74 QYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWF 133
Query: 63 LSGSTXXXXXXXXXXXXWDQWAD------------ENGDLGPIYGYQWRSWPT------- 103
+ GST WD E GDLGP+YG+QWR +
Sbjct: 134 IKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMES 193
Query: 104 -LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQ 162
G+ +DQL VI IKT+P+ RRII+ AWN D+ M LPPCH L QFYV N++LSCQ
Sbjct: 194 DYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLMALPPCHALXQFYVVNSELSCQ 253
Query: 163 LYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222
LYQRS D+ LG+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R
Sbjct: 254 LYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQR 313
Query: 223 NPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
P P L IL K + D+ EDFQI YNP +I +A+
Sbjct: 314 EPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 355
>pdb|2G8D|A Chain A, Lactobacillus Casei Thymidylate Synthase Y261w-dump
Complex
Length = 316
Score = 272 bits (695), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 144/311 (46%), Positives = 181/311 (58%), Gaps = 50/311 (16%)
Query: 4 YLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFL 63
YL+ + V + G K DRT GT SIFG+QMRF+L KGFPLLTTKK+ I EL+WFL
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 64 SGSTXXXXXXXXXXXXWDQWADEN------------------------------------ 87
G T WD+WA E
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 88 --------------GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAW 133
GDLG +YG QWR+W T +G IDQL VI+QIKT P SRR+IVSAW
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAW 185
Query: 134 NVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETG 193
N D+ M LPPCH L+QFYV + KLS QLYQRSADIFLG+PFNIASY+LL H++AHE G
Sbjct: 186 NPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECG 245
Query: 194 LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYN 253
L+VG+FI T GD HL++NHLDQ ++QL R P P L + D++ +D ++ +Y+
Sbjct: 246 LEVGEFIHTFGDAHLWVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYD 305
Query: 254 PQKSIYAPIAI 264
P +I AP+A+
Sbjct: 306 PYPAIKAPVAV 316
>pdb|2G8A|A Chain A, Lactobacillus Casei Y261m In Complex With Substrate, Dump
Length = 316
Score = 271 bits (694), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 144/311 (46%), Positives = 180/311 (57%), Gaps = 50/311 (16%)
Query: 4 YLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFL 63
YL+ + V + G K DRT GT SIFG+QMRF+L KGFPLLTTKK+ I EL+WFL
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 64 SGSTXXXXXXXXXXXXWDQWADEN------------------------------------ 87
G T WD+WA E
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 88 --------------GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAW 133
GDLG +YG QWR+W T +G IDQL VI+QIKT P SRR+IVSAW
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAW 185
Query: 134 NVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETG 193
N D+ M LPPCH L+QFYV + KLS QLYQRSADIFLG+PFNIASY+LL H++AHE G
Sbjct: 186 NPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECG 245
Query: 194 LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYN 253
L+VG+FI T GD HL +NHLDQ ++QL R P P L + D++ +D ++ +Y+
Sbjct: 246 LEVGEFIHTFGDAHLMVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYD 305
Query: 254 PQKSIYAPIAI 264
P +I AP+A+
Sbjct: 306 PYPAIKAPVAV 316
>pdb|1BO7|A Chain A, Thymidylate Synthase R179t Mutant
Length = 316
Score = 271 bits (694), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 144/311 (46%), Positives = 180/311 (57%), Gaps = 50/311 (16%)
Query: 4 YLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFL 63
YL+ + V + G K DRT GT SIFG+QMRF+L KGFPLLTTKK+ I EL+WFL
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 64 SGSTXXXXXXXXXXXXWDQWADEN------------------------------------ 87
G T WD+WA E
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 88 --------------GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAW 133
GDLG +YG QWR+W T +G IDQL VI+QIKT P SR +IVSAW
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRTLIVSAW 185
Query: 134 NVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETG 193
N D+ M LPPCH L+QFYV + KLS QLYQRSADIFLG+PFNIASY+LL H++AHE G
Sbjct: 186 NPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECG 245
Query: 194 LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYN 253
L+VG+FI T GD HLY+NHLDQ ++QL R P P L + D++ +D ++ +Y+
Sbjct: 246 LEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYD 305
Query: 254 PQKSIYAPIAI 264
P +I AP+A+
Sbjct: 306 PYPAIKAPVAV 316
>pdb|1BO8|A Chain A, Thymidylate Synthase R178t Mutant
Length = 316
Score = 271 bits (694), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 144/311 (46%), Positives = 180/311 (57%), Gaps = 50/311 (16%)
Query: 4 YLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFL 63
YL+ + V + G K DRT GT SIFG+QMRF+L KGFPLLTTKK+ I EL+WFL
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 64 SGSTXXXXXXXXXXXXWDQWADEN------------------------------------ 87
G T WD+WA E
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 88 --------------GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAW 133
GDLG +YG QWR+W T +G IDQL VI+QIKT P S R+IVSAW
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSTRLIVSAW 185
Query: 134 NVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETG 193
N D+ M LPPCH L+QFYV + KLS QLYQRSADIFLG+PFNIASY+LL H++AHE G
Sbjct: 186 NPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECG 245
Query: 194 LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYN 253
L+VG+FI T GD HLY+NHLDQ ++QL R P P L + D++ +D ++ +Y+
Sbjct: 246 LEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYD 305
Query: 254 PQKSIYAPIAI 264
P +I AP+A+
Sbjct: 306 PYPAIKAPVAV 316
>pdb|1TSV|A Chain A, Thymidylate Synthase R179a Mutant
pdb|1TSW|A Chain A, Thymidylate Synthase R179a Mutant
Length = 316
Score = 271 bits (694), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 144/311 (46%), Positives = 180/311 (57%), Gaps = 50/311 (16%)
Query: 4 YLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFL 63
YL+ + V + G K DRT GT SIFG+QMRF+L KGFPLLTTKK+ I EL+WFL
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 64 SGSTXXXXXXXXXXXXWDQWADEN------------------------------------ 87
G T WD+WA E
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 88 --------------GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAW 133
GDLG +YG QWR+W T +G IDQL VI+QIKT P SR +IVSAW
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRALIVSAW 185
Query: 134 NVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETG 193
N D+ M LPPCH L+QFYV + KLS QLYQRSADIFLG+PFNIASY+LL H++AHE G
Sbjct: 186 NPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECG 245
Query: 194 LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYN 253
L+VG+FI T GD HLY+NHLDQ ++QL R P P L + D++ +D ++ +Y+
Sbjct: 246 LEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYD 305
Query: 254 PQKSIYAPIAI 264
P +I AP+A+
Sbjct: 306 PYPAIKAPVAV 316
>pdb|2G89|A Chain A, L. Casei Thymidylate Synthase Y261a In Complex With
Substrate, Dump
Length = 316
Score = 271 bits (694), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 144/311 (46%), Positives = 180/311 (57%), Gaps = 50/311 (16%)
Query: 4 YLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFL 63
YL+ + V + G K DRT GT SIFG+QMRF+L KGFPLLTTKK+ I EL+WFL
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 64 SGSTXXXXXXXXXXXXWDQWADEN------------------------------------ 87
G T WD+WA E
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 88 --------------GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAW 133
GDLG +YG QWR+W T +G IDQL VI+QIKT P SRR+IVSAW
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAW 185
Query: 134 NVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETG 193
N D+ M LPPCH L+QFYV + KLS QLYQRSADIFLG+PFNIASY+LL H++AHE G
Sbjct: 186 NPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECG 245
Query: 194 LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYN 253
L+VG+FI T GD HL +NHLDQ ++QL R P P L + D++ +D ++ +Y+
Sbjct: 246 LEVGEFIHTFGDAHLAVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYD 305
Query: 254 PQKSIYAPIAI 264
P +I AP+A+
Sbjct: 306 PYPAIKAPVAV 316
>pdb|3EAW|X Chain X, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 271 bits (693), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 137/282 (48%), Positives = 177/282 (62%), Gaps = 20/282 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL ++H+ G++K DRTG GTLS+FG Q R++L+ FPLLTTK++ K ++ EL+WF
Sbjct: 32 QYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWF 91
Query: 63 LSGSTXXXXXXXXXXXXWDQWAD------------ENGDLGPIYGYQWRSWPT------- 103
+ GST WD E GDLGP+YG+QWR +
Sbjct: 92 IKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMES 151
Query: 104 -LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQ 162
G+ +DQL VI IKT+P+ RRII+ AWN D+ M LPPCH L QFYV N++LSCQ
Sbjct: 152 DYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALXQFYVVNSELSCQ 211
Query: 163 LYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222
LYQRS D+ LG+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R
Sbjct: 212 LYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQR 271
Query: 223 NPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
P P L IL K + D+ EDFQI YNP +I +A+
Sbjct: 272 EPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|2RD8|A Chain A, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|A Chain A, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|B Chain B, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|C Chain C, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|D Chain D, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|E Chain E, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|F Chain F, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|3H9K|A Chain A, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3H9K|B Chain B, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3H9K|C Chain C, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3H9K|D Chain D, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3H9K|E Chain E, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3HB8|A Chain A, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3HB8|B Chain B, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3HB8|C Chain C, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3HB8|D Chain D, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3HB8|E Chain E, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3OB7|A Chain A, Human Thymidylate Synthase R163k With Cys 195 Covalently
Modified By Glutathione
pdb|3OB7|B Chain B, Human Thymidylate Synthase R163k With Cys 195 Covalently
Modified By Glutathione
pdb|3OB7|C Chain C, Human Thymidylate Synthase R163k With Cys 195 Covalently
Modified By Glutathione
pdb|3OB7|D Chain D, Human Thymidylate Synthase R163k With Cys 195 Covalently
Modified By Glutathione
pdb|3OB7|E Chain E, Human Thymidylate Synthase R163k With Cys 195 Covalently
Modified By Glutathione
Length = 313
Score = 271 bits (693), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 137/282 (48%), Positives = 177/282 (62%), Gaps = 20/282 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL ++H+ G++K DRTG GTLS+FG Q R++L+ FPLLTTK++ K ++ EL+WF
Sbjct: 32 QYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWF 91
Query: 63 LSGSTXXXXXXXXXXXXWDQWAD------------ENGDLGPIYGYQWRSWPT------- 103
+ GST WD E GDLGP+YG+QWR +
Sbjct: 92 IKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMES 151
Query: 104 -LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQ 162
G+ +DQL VI IKT+P+ RRII+ AWN D+ M LPPCH L QFYV N++LSCQ
Sbjct: 152 DYSGQGVDQLQKVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSELSCQ 211
Query: 163 LYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222
LYQRS D+ LG+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R
Sbjct: 212 LYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQR 271
Query: 223 NPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
P P L IL K + D+ EDFQI YNP +I +A+
Sbjct: 272 EPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|1JMH|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 271 bits (693), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 144/311 (46%), Positives = 180/311 (57%), Gaps = 50/311 (16%)
Query: 4 YLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFL 63
YL+ + V + G K DRT GT SIFG+QMRF+L KGFPLLTTKK+ I EL+WFL
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 64 SGSTXXXXXXXXXXXXWDQWADEN------------------------------------ 87
G T WD+WA E
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 88 --------------GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAW 133
GDLG +YG QWR+W T +G IDQL VI+QIKT P SRR+IVSAW
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAW 185
Query: 134 NVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETG 193
N D+ M LPPCH L+QFYV + KLS QLYQRSADIFLG+PF IASY+LL H++AHE G
Sbjct: 186 NPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFIIASYALLTHLVAHECG 245
Query: 194 LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYN 253
L+VG+FI T GD HLY+NHLDQ ++QL R P P L + D++ +D ++ +Y+
Sbjct: 246 LEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYD 305
Query: 254 PQKSIYAPIAI 264
P +I AP+A+
Sbjct: 306 PYPAIKAPVAV 316
>pdb|3EF9|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3GH0|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 271 bits (693), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 137/282 (48%), Positives = 177/282 (62%), Gaps = 20/282 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL ++H+ G++K DRTG GTLS+FG Q R++L+ FPLLTTK++ K ++ EL+WF
Sbjct: 32 QYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWF 91
Query: 63 LSGSTXXXXXXXXXXXXWDQWAD------------ENGDLGPIYGYQWRSWPT------- 103
+ GST WD E GDLGP+YG+QWR +
Sbjct: 92 IKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMES 151
Query: 104 -LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQ 162
G+ +DQL VI IKT+P+ RRII+ AWN D+ M LPPCH L QFYV N++LSCQ
Sbjct: 152 DYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSELSCQ 211
Query: 163 LYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222
LYQRS D+ LG+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R
Sbjct: 212 LYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQR 271
Query: 223 NPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
P P L IL K + D+ EDFQI YNP +I +A+
Sbjct: 272 EPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|3GH2|X Chain X, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 271 bits (692), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 137/282 (48%), Positives = 177/282 (62%), Gaps = 20/282 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL ++H+ G++K DRTG GTLS+FG Q R++L+ FPLLTTK++ K ++ EL+WF
Sbjct: 32 QYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWF 91
Query: 63 LSGSTXXXXXXXXXXXXWDQWAD------------ENGDLGPIYGYQWRSWPT------- 103
+ GST WD E GDLGP+YG+QWR +
Sbjct: 92 IKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMES 151
Query: 104 -LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQ 162
G+ +DQL VI IKT+P+ RRII+ AWN D+ M LPPCH L QFYV N++LSCQ
Sbjct: 152 DYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLMALPPCHALCQFYVVNSELSCQ 211
Query: 163 LYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222
LYQRS D+ LG+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R
Sbjct: 212 LYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQR 271
Query: 223 NPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
P P L IL K + D+ EDFQI YNP +I +A+
Sbjct: 272 EPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|1BP0|A Chain A, Thymidylate Synthase R23i Mutant
Length = 316
Score = 271 bits (692), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 144/311 (46%), Positives = 180/311 (57%), Gaps = 50/311 (16%)
Query: 4 YLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFL 63
YL+ + V + G K D T GT SIFG+QMRF+L KGFPLLTTKK+ I EL+WFL
Sbjct: 6 YLDLAKKVLDEGHFKPDITHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 64 SGSTXXXXXXXXXXXXWDQWADEN------------------------------------ 87
G T WD+WA E
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 88 --------------GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAW 133
GDLG +YG QWR+W T +G IDQL VI+QIKT P SRR+IVSAW
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAW 185
Query: 134 NVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETG 193
N D+ M LPPCH L+QFYV + KLS QLYQRSADIFLG+PFNIASY+LL H++AHE G
Sbjct: 186 NPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECG 245
Query: 194 LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYN 253
L+VG+FI T GD HLY+NHLDQ ++QL R P P L + D++ +D ++ +Y+
Sbjct: 246 LEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYD 305
Query: 254 PQKSIYAPIAI 264
P +I AP+A+
Sbjct: 306 PYPAIKAPVAV 316
>pdb|3GG5|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3GG5|B Chain B, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3GG5|C Chain C, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3GG5|D Chain D, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 271 bits (692), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 137/282 (48%), Positives = 177/282 (62%), Gaps = 20/282 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL ++H+ G++K DRTG GTLS+FG Q R++L+ FPLLTTK++ K ++ EL+WF
Sbjct: 32 QYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWF 91
Query: 63 LSGSTXXXXXXXXXXXXWDQWAD------------ENGDLGPIYGYQWRSWPT------- 103
+ GST WD E GDLGP+YG+QWR +
Sbjct: 92 IKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMES 151
Query: 104 -LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQ 162
G+ +DQL VI IKT+P+ RRII+ AWN D+ M LPPCH L QFYV N++LSCQ
Sbjct: 152 DYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSELSCQ 211
Query: 163 LYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222
LYQRS D+ LG+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R
Sbjct: 212 LYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQR 271
Query: 223 NPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
P P L IL K + D+ EDFQI YNP +I +A+
Sbjct: 272 EPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|1NJA|A Chain A, Thymidylate Synthase, Mutation, N229c With
2'-deoxycytidine 5'- Monophosphate (dcmp)
pdb|1NJB|A Chain A, Thymidylate Synthase
pdb|1TVV|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 271 bits (692), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 144/311 (46%), Positives = 180/311 (57%), Gaps = 50/311 (16%)
Query: 4 YLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFL 63
YL+ + V + G K DRT GT SIFG+QMRF+L KGFPLLTTKK+ I EL+WFL
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 64 SGSTXXXXXXXXXXXXWDQWADEN------------------------------------ 87
G T WD+WA E
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 88 --------------GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAW 133
GDLG +YG QWR+W T +G IDQL VI+QIKT P SRR+IVSAW
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAW 185
Query: 134 NVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETG 193
N D+ M LPPCH L+QFYV + KLS QLYQRSADIFLG+PF IASY+LL H++AHE G
Sbjct: 186 NPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFCIASYALLTHLVAHECG 245
Query: 194 LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYN 253
L+VG+FI T GD HLY+NHLDQ ++QL R P P L + D++ +D ++ +Y+
Sbjct: 246 LEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYD 305
Query: 254 PQKSIYAPIAI 264
P +I AP+A+
Sbjct: 306 PYPAIKAPVAV 316
>pdb|4GYH|A Chain A, Structure Of Human Thymidylate Synthase At High Salt
Conditions
pdb|4H1I|A Chain A, Structure Of Human Thymidylate Synthase At Low Salt
Conditions
pdb|4H1I|B Chain B, Structure Of Human Thymidylate Synthase At Low Salt
Conditions
pdb|4H1I|C Chain C, Structure Of Human Thymidylate Synthase At Low Salt
Conditions
pdb|4H1I|D Chain D, Structure Of Human Thymidylate Synthase At Low Salt
Conditions
Length = 318
Score = 271 bits (692), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 137/282 (48%), Positives = 177/282 (62%), Gaps = 20/282 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL ++H+ G++K DRTG GTLS+FG Q R++L+ FPLLTTK++ K ++ EL+WF
Sbjct: 32 QYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWF 91
Query: 63 LSGSTXXXXXXXXXXXXWDQWAD------------ENGDLGPIYGYQWRSWPT------- 103
+ GST WD E GDLGP+YG+QWR +
Sbjct: 92 IKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMES 151
Query: 104 -LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQ 162
G+ +DQL VI IKT+P+ RRII+ AWN D+ M LPPCH L QFYV N++LSCQ
Sbjct: 152 DYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSELSCQ 211
Query: 163 LYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222
LYQRS D+ LG+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R
Sbjct: 212 LYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQR 271
Query: 223 NPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
P P L IL K + D+ EDFQI YNP +I +A+
Sbjct: 272 EPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|3EDW|X Chain X, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3EJL|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3EJL|B Chain B, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3EJL|C Chain C, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3EJL|D Chain D, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 271 bits (692), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 137/282 (48%), Positives = 177/282 (62%), Gaps = 20/282 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL ++H+ G++K DRTG GTLS+FG Q R++L+ FPLLTTK++ K ++ EL+WF
Sbjct: 32 QYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWF 91
Query: 63 LSGSTXXXXXXXXXXXXWDQWAD------------ENGDLGPIYGYQWRSWPT------- 103
+ GST WD E GDLGP+YG+QWR +
Sbjct: 92 IKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMES 151
Query: 104 -LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQ 162
G+ +DQL VI IKT+P+ RRII+ AWN D+ M LPPCH L QFYV N++LSCQ
Sbjct: 152 DYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSELSCQ 211
Query: 163 LYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222
LYQRS D+ LG+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R
Sbjct: 212 LYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQR 271
Query: 223 NPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
P P L IL K + D+ EDFQI YNP +I +A+
Sbjct: 272 EPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|1HZW|A Chain A, Crystal Structure Of Human Thymidylate Synthase
pdb|1HZW|B Chain B, Crystal Structure Of Human Thymidylate Synthase
pdb|1I00|A Chain A, Crystal Structure Of Human Thymidylate Synthase, Ternary
Complex With Dump And Tomudex
pdb|1I00|B Chain B, Crystal Structure Of Human Thymidylate Synthase, Ternary
Complex With Dump And Tomudex
Length = 290
Score = 271 bits (692), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 137/282 (48%), Positives = 177/282 (62%), Gaps = 20/282 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL ++H+ G++K DRTG GTLS+FG Q R++L+ FPLLTTK++ K ++ EL+WF
Sbjct: 9 QYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWF 68
Query: 63 LSGSTXXXXXXXXXXXXWDQWAD------------ENGDLGPIYGYQWRSWPT------- 103
+ GST WD E GDLGP+YG+QWR +
Sbjct: 69 IKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMES 128
Query: 104 -LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQ 162
G+ +DQL VI IKT+P+ RRII+ AWN D+ M LPPCH L QFYV N++LSCQ
Sbjct: 129 DYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSELSCQ 188
Query: 163 LYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222
LYQRS D+ LG+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R
Sbjct: 189 LYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQR 248
Query: 223 NPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
P P L IL K + D+ EDFQI YNP +I +A+
Sbjct: 249 EPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 290
>pdb|1JU6|A Chain A, Human Thymidylate Synthase Complex With Dump And Ly231514,
A Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JU6|B Chain B, Human Thymidylate Synthase Complex With Dump And Ly231514,
A Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JU6|C Chain C, Human Thymidylate Synthase Complex With Dump And Ly231514,
A Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JU6|D Chain D, Human Thymidylate Synthase Complex With Dump And Ly231514,
A Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JUJ|A Chain A, Human Thymidylate Synthase Bound To Dump And Ly231514, A
Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JUJ|B Chain B, Human Thymidylate Synthase Bound To Dump And Ly231514, A
Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JUJ|C Chain C, Human Thymidylate Synthase Bound To Dump And Ly231514, A
Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JUJ|D Chain D, Human Thymidylate Synthase Bound To Dump And Ly231514, A
Pyrrolo(2,3-D)pyrimidine-Based Antifolate
Length = 313
Score = 270 bits (691), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 137/282 (48%), Positives = 177/282 (62%), Gaps = 20/282 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL ++H+ G++K DRTG GTLS+FG Q R++L+ FPLLTTK++ K ++ EL+WF
Sbjct: 32 QYLGQIQHILRCGVEKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWF 91
Query: 63 LSGSTXXXXXXXXXXXXWDQWAD------------ENGDLGPIYGYQWRSWPT------- 103
+ GST WD E GDLGP+YG+QWR +
Sbjct: 92 IKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMES 151
Query: 104 -LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQ 162
G+ +DQL VI IKT+P+ RRII+ AWN D+ M LPPCH L QFYV N++LSCQ
Sbjct: 152 DYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSELSCQ 211
Query: 163 LYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222
LYQRS D+ LG+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R
Sbjct: 212 LYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQR 271
Query: 223 NPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
P P L IL K + D+ EDFQI YNP +I +A+
Sbjct: 272 EPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|3IHI|A Chain A, Crystal Structure Of Mouse Thymidylate Synthase
pdb|3IHI|B Chain B, Crystal Structure Of Mouse Thymidylate Synthase
pdb|4E5O|A Chain A, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4E5O|B Chain B, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4E5O|C Chain C, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4E5O|D Chain D, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4E5O|E Chain E, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4E5O|F Chain F, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4EB4|A Chain A, Crystal Structure Of Mouse Thymidylate Synthase In Ternary
Complex With Dump And Tomudex
pdb|4EB4|B Chain B, Crystal Structure Of Mouse Thymidylate Synthase In Ternary
Complex With Dump And Tomudex
pdb|4EB4|C Chain C, Crystal Structure Of Mouse Thymidylate Synthase In Ternary
Complex With Dump And Tomudex
pdb|4EB4|D Chain D, Crystal Structure Of Mouse Thymidylate Synthase In Ternary
Complex With Dump And Tomudex
Length = 307
Score = 270 bits (691), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 136/282 (48%), Positives = 176/282 (62%), Gaps = 20/282 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL + H+ G KK DRTG GTLS+FG Q R++L+ FPLLTTK++ K ++ EL+WF
Sbjct: 26 QYLRQVEHILRCGFKKEDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWF 85
Query: 63 LSGSTXXXXXXXXXXXXWDQ------------WADENGDLGPIYGYQWRSWPT------- 103
+ GST WD A + GDLGP+YG+QWR +
Sbjct: 86 IKGSTNAKELSSKGVRIWDANGSRDFLDSLGFSARQEGDLGPVYGFQWRHFGAEYKDMDS 145
Query: 104 -LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQ 162
G+ +DQL VI IKT+P+ RRII+ AWN D+ M LPPCH L QFYV N +LSCQ
Sbjct: 146 DYSGQGVDQLQKVIDTIKTNPDDRRIIMCAWNPKDLPLMALPPCHALCQFYVVNGELSCQ 205
Query: 163 LYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222
LYQRS D+ LG+PFNIASY+LL ++IAH TGL+ GDF+ T GD H+YLNH++ + QL R
Sbjct: 206 LYQRSGDMGLGVPFNIASYALLTYMIAHITGLQPGDFVHTLGDAHIYLNHIEPLKIQLQR 265
Query: 223 NPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
P P L IL K ++ D+ EDFQI YNP +I +A+
Sbjct: 266 EPRPFPKLKILRKVETIDDFKVEDFQIEGYNPHPTIKMEMAV 307
>pdb|1HVY|A Chain A, Human Thymidylate Synthase Complexed With Dump And
Raltitrexed, An Antifolate Drug, Is In The Closed
Conformation
pdb|1HVY|B Chain B, Human Thymidylate Synthase Complexed With Dump And
Raltitrexed, An Antifolate Drug, Is In The Closed
Conformation
pdb|1HVY|C Chain C, Human Thymidylate Synthase Complexed With Dump And
Raltitrexed, An Antifolate Drug, Is In The Closed
Conformation
pdb|1HVY|D Chain D, Human Thymidylate Synthase Complexed With Dump And
Raltitrexed, An Antifolate Drug, Is In The Closed
Conformation
Length = 288
Score = 270 bits (691), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 137/282 (48%), Positives = 177/282 (62%), Gaps = 20/282 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL ++H+ G++K DRTG GTLS+FG Q R++L+ FPLLTTK++ K ++ EL+WF
Sbjct: 7 QYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWF 66
Query: 63 LSGSTXXXXXXXXXXXXWDQWAD------------ENGDLGPIYGYQWRSWPT------- 103
+ GST WD E GDLGP+YG+QWR +
Sbjct: 67 IKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMES 126
Query: 104 -LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQ 162
G+ +DQL VI IKT+P+ RRII+ AWN D+ M LPPCH L QFYV N++LSCQ
Sbjct: 127 DYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSELSCQ 186
Query: 163 LYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222
LYQRS D+ LG+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R
Sbjct: 187 LYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQR 246
Query: 223 NPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
P P L IL K + D+ EDFQI YNP +I +A+
Sbjct: 247 EPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 288
>pdb|3ED7|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 295
Score = 270 bits (690), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 137/282 (48%), Positives = 177/282 (62%), Gaps = 20/282 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL ++H+ G++K DRTG GTLS+FG Q R++L+ FPLLTTK++ K ++ EL+WF
Sbjct: 14 QYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWF 73
Query: 63 LSGSTXXXXXXXXXXXXWDQWAD------------ENGDLGPIYGYQWRSWPT------- 103
+ GST WD E GDLGP+YG+QWR +
Sbjct: 74 IKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMES 133
Query: 104 -LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQ 162
G+ +DQL VI IKT+P+ RRII+ AWN D+ M LPPCH L QFYV N++LSCQ
Sbjct: 134 DYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSELSCQ 193
Query: 163 LYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222
LYQRS D+ LG+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R
Sbjct: 194 LYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQR 253
Query: 223 NPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
P P L IL K + D+ EDFQI YNP +I +A+
Sbjct: 254 EPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 295
>pdb|3EGY|X Chain X, Crystal Structure Of Human Thymidyalte Synthase A191k With
Loop 181- 197 Stabilized In The Inactive Conformation
Length = 313
Score = 270 bits (690), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 137/282 (48%), Positives = 177/282 (62%), Gaps = 20/282 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL ++H+ G++K DRTG GTLS+FG Q R++L+ FPLLTTK++ K ++ EL+WF
Sbjct: 32 QYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWF 91
Query: 63 LSGSTXXXXXXXXXXXXWDQWAD------------ENGDLGPIYGYQWRSWPT------- 103
+ GST WD E GDLGP+YG+QWR +
Sbjct: 92 IKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMES 151
Query: 104 -LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQ 162
G+ +DQL VI IKT+P+ RRII+ AWN D+ MKLPP H L QFYV N++LSCQ
Sbjct: 152 DYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLMKLPPXHALXQFYVVNSELSCQ 211
Query: 163 LYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222
LYQRS D+ LG+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R
Sbjct: 212 LYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQR 271
Query: 223 NPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
P P L IL K + D+ EDFQI YNP +I +A+
Sbjct: 272 EPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|1RTS|A Chain A, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|1RTS|B Chain B, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|2TSR|A Chain A, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|2TSR|B Chain B, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|2TSR|C Chain C, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|2TSR|D Chain D, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
Length = 307
Score = 270 bits (690), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 136/282 (48%), Positives = 176/282 (62%), Gaps = 20/282 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL + H+ G KK DRTG GTLS+FG Q R++L+ FPLLTTK++ K ++ EL+WF
Sbjct: 26 QYLRQVEHIMRCGFKKEDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWF 85
Query: 63 LSGSTXXXXXXXXXXXXWDQ------------WADENGDLGPIYGYQWRSWPT------- 103
+ GST WD A + GDLGP+YG+QWR +
Sbjct: 86 IKGSTNAKELSSKGVRIWDANGSRDFLDSLGFSARQEGDLGPVYGFQWRHFGADYKDMDS 145
Query: 104 -LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQ 162
G+ +DQL VI IKT+P+ RRII+ AWN D+ M LPPCH L QFYV N +LSCQ
Sbjct: 146 DYSGQGVDQLQKVIDTIKTNPDDRRIIMCAWNPKDLPLMALPPCHALCQFYVVNGELSCQ 205
Query: 163 LYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222
LYQRS D+ LG+PFNIASY+LL ++IAH TGL+ GDF+ T GD H+YLNH++ + QL R
Sbjct: 206 LYQRSGDMGLGVPFNIASYALLTYMIAHITGLQPGDFVHTLGDAHIYLNHIEPLKIQLQR 265
Query: 223 NPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
P P L IL K ++ D+ EDFQI YNP +I +A+
Sbjct: 266 EPRPFPKLRILRKVETIDDFKVEDFQIEGYNPHPTIKMEMAV 307
>pdb|1BPJ|A Chain A, Thymidylate Synthase R178t, R179t Double Mutant
Length = 316
Score = 269 bits (688), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 143/311 (45%), Positives = 179/311 (57%), Gaps = 50/311 (16%)
Query: 4 YLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFL 63
YL+ + V + G K DRT GT SIFG+QMRF+L KGFPLLTTKK+ I EL+WFL
Sbjct: 6 YLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 64 SGSTXXXXXXXXXXXXWDQWADEN------------------------------------ 87
G T WD+WA E
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 88 --------------GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAW 133
GDLG +YG QWR+W T +G IDQL VI+QIKT P S +IVSAW
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSTTLIVSAW 185
Query: 134 NVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETG 193
N D+ M LPPCH L+QFYV + KLS QLYQRSADIFLG+PFNIASY+LL H++AHE G
Sbjct: 186 NPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECG 245
Query: 194 LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYN 253
L+VG+FI T GD HLY+NHLDQ ++QL R P P L + D++ +D ++ +Y+
Sbjct: 246 LEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYD 305
Query: 254 PQKSIYAPIAI 264
P +I AP+A+
Sbjct: 306 PYPAIKAPVAV 316
>pdb|3EHI|X Chain X, Crystal Structure Of Human Thymidyalte Synthase M190k With
Loop 181- 197 Stabilized In The Inactive Conformation
Length = 313
Score = 269 bits (688), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 136/282 (48%), Positives = 176/282 (62%), Gaps = 20/282 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL ++H+ G++K DRTG GTLS+FG Q R++L+ FPLLTTK++ K ++ EL+WF
Sbjct: 32 QYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWF 91
Query: 63 LSGSTXXXXXXXXXXXXWDQWAD------------ENGDLGPIYGYQWRSWPT------- 103
+ GST WD E GDLGP+YG+QWR +
Sbjct: 92 IKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMES 151
Query: 104 -LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQ 162
G+ +DQL VI IKT+P+ RRII+ AWN D+ LPPCH L QFYV N++LSCQ
Sbjct: 152 DYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLKALPPCHALXQFYVVNSELSCQ 211
Query: 163 LYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222
LYQRS D+ LG+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R
Sbjct: 212 LYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQR 271
Query: 223 NPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
P P L IL K + D+ EDFQI YNP +I +A+
Sbjct: 272 EPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|3N5G|A Chain A, Crystal Structure Of Histidine-Tagged Human Thymidylate
Synthase
Length = 325
Score = 268 bits (686), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 136/282 (48%), Positives = 176/282 (62%), Gaps = 20/282 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL ++H+ G++K DRTG GTLS+FG Q R++L+ FPLLTTK++ K ++ EL+WF
Sbjct: 44 QYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWF 103
Query: 63 LSGSTXXXXXXXXXXXXWDQWAD------------ENGDLGPIYGYQWRSWPT------- 103
+ GST WD E GDLGP+YG+QWR +
Sbjct: 104 IKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMES 163
Query: 104 -LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQ 162
G+ +DQL VI IKT+P+ RRII+ AWN D+ M LPP H L QFYV N++LSCQ
Sbjct: 164 DYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLMALPPXHALXQFYVVNSELSCQ 223
Query: 163 LYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222
LYQRS D+ LG+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R
Sbjct: 224 LYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQR 283
Query: 223 NPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
P P L IL K + D+ EDFQI YNP +I +A+
Sbjct: 284 EPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 325
>pdb|1BP6|A Chain A, Thymidylate Synthase R23i, R179t Double Mutant
Length = 316
Score = 268 bits (686), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 143/311 (45%), Positives = 179/311 (57%), Gaps = 50/311 (16%)
Query: 4 YLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFL 63
YL+ + V + G K D T GT SIFG+QMRF+L KGFPLLTTKK+ I EL+WFL
Sbjct: 6 YLDLAKKVLDEGHFKPDITHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFL 65
Query: 64 SGSTXXXXXXXXXXXXWDQWADEN------------------------------------ 87
G T WD+WA E
Sbjct: 66 HGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKF 125
Query: 88 --------------GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAW 133
GDLG +YG QWR+W T +G IDQL VI+QIKT P SR +IVSAW
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRTLIVSAW 185
Query: 134 NVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETG 193
N D+ M LPPCH L+QFYV + KLS QLYQRSADIFLG+PFNIASY+LL H++AHE G
Sbjct: 186 NPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECG 245
Query: 194 LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYN 253
L+VG+FI T GD HLY+NHLDQ ++QL R P P L + D++ +D ++ +Y+
Sbjct: 246 LEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYD 305
Query: 254 PQKSIYAPIAI 264
P +I AP+A+
Sbjct: 306 PYPAIKAPVAV 316
>pdb|1HW3|A Chain A, Structure Of Human Thymidylate Synthase Suggests
Advantages Of Chemotherapy With Noncompetitive
Inhibitors
pdb|1YPV|A Chain A, Structure Of Human Thymidylate Synthase At Low Salt
Conditions
pdb|2ONB|A Chain A, Human Thymidylate Synthase At Low Salt Conditions With
Pdpa Bound
Length = 313
Score = 268 bits (685), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 136/282 (48%), Positives = 176/282 (62%), Gaps = 20/282 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL ++H+ G++K DRTG GTLS+FG Q R++L+ FPLLTTK++ K ++ EL+WF
Sbjct: 32 QYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWF 91
Query: 63 LSGSTXXXXXXXXXXXXWDQWAD------------ENGDLGPIYGYQWRSWPT------- 103
+ GST WD E GDLGP+YG+QWR +
Sbjct: 92 IKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMES 151
Query: 104 -LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQ 162
G+ +DQL VI IKT+P+ RRII+ AWN D+ M LPP H L QFYV N++LSCQ
Sbjct: 152 DYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLMALPPXHALXQFYVVNSELSCQ 211
Query: 163 LYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222
LYQRS D+ LG+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R
Sbjct: 212 LYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQR 271
Query: 223 NPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
P P L IL K + D+ EDFQI YNP +I +A+
Sbjct: 272 EPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|3N5E|A Chain A, Crystal Structure Of Human Thymidylate Synthase Bound To A
Peptide Inhibitor
Length = 325
Score = 268 bits (684), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 136/282 (48%), Positives = 176/282 (62%), Gaps = 20/282 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL ++H+ G++K DRTG GTLS+FG Q R++L+ FPLLTTK++ K ++ EL+WF
Sbjct: 44 QYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWF 103
Query: 63 LSGSTXXXXXXXXXXXXWDQWAD------------ENGDLGPIYGYQWRSWPT------- 103
+ GST WD E GDLGP+YG+QWR +
Sbjct: 104 IKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMES 163
Query: 104 -LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQ 162
G+ +DQL VI IKT+P+ RRII+ AWN D+ M LPP H L QFYV N++LSCQ
Sbjct: 164 DYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLMALPPXHALCQFYVVNSELSCQ 223
Query: 163 LYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222
LYQRS D+ LG+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R
Sbjct: 224 LYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQR 283
Query: 223 NPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
P P L IL K + D+ EDFQI YNP +I +A+
Sbjct: 284 EPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 325
>pdb|3EBU|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 268 bits (684), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 136/282 (48%), Positives = 176/282 (62%), Gaps = 20/282 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL ++H+ G++K DRTG GTLS+FG Q R++L+ FPLLTTK++ K ++ EL+WF
Sbjct: 32 QYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWF 91
Query: 63 LSGSTXXXXXXXXXXXXWDQWAD------------ENGDLGPIYGYQWRSWPT------- 103
+ GST WD E GDLGP+YG+QWR +
Sbjct: 92 IKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMES 151
Query: 104 -LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQ 162
G+ +DQL VI IKT+P+ RRII+ AWN D+ M LPP H L QFYV N++LSCQ
Sbjct: 152 DYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLMALPPXHALCQFYVVNSELSCQ 211
Query: 163 LYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222
LYQRS D+ LG+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R
Sbjct: 212 LYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQR 271
Query: 223 NPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
P P L IL K + D+ EDFQI YNP +I +A+
Sbjct: 272 EPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|4E28|A Chain A, Structure Of Human Thymidylate Synthase In Inactive
Conformation With A Novel Non-Peptidic Inhibitor
Length = 325
Score = 267 bits (683), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 136/282 (48%), Positives = 176/282 (62%), Gaps = 20/282 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL ++H+ G++K DRTG GTLS+FG Q R++L+ FPLLTTK++ K ++ EL+WF
Sbjct: 44 QYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWF 103
Query: 63 LSGSTXXXXXXXXXXXXWDQWAD------------ENGDLGPIYGYQWRSWPT------- 103
+ GST WD E GDLGP+YG+QWR +
Sbjct: 104 IKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMES 163
Query: 104 -LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQ 162
G+ +DQL VI IKT+P+ RRII+ AWN D+ M LPP H L QFYV N++LSCQ
Sbjct: 164 DYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLMALPPXHALCQFYVVNSELSCQ 223
Query: 163 LYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222
LYQRS D+ LG+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R
Sbjct: 224 LYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQR 283
Query: 223 NPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
P P L IL K + D+ EDFQI YNP +I +A+
Sbjct: 284 EPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 325
>pdb|3N5E|B Chain B, Crystal Structure Of Human Thymidylate Synthase Bound To A
Peptide Inhibitor
Length = 325
Score = 267 bits (683), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 136/282 (48%), Positives = 176/282 (62%), Gaps = 20/282 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL ++H+ G++K DRTG GTLS+FG Q R++L+ FPLLTTK++ K ++ EL+WF
Sbjct: 44 QYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWF 103
Query: 63 LSGSTXXXXXXXXXXXXWDQWAD------------ENGDLGPIYGYQWRSWPT------- 103
+ GST WD E GDLGP+YG+QWR +
Sbjct: 104 IKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMES 163
Query: 104 -LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQ 162
G+ +DQL VI IKT+P+ RRII+ AWN D+ M LPP H L QFYV N++LSCQ
Sbjct: 164 DYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPXHALCQFYVVNSELSCQ 223
Query: 163 LYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222
LYQRS D+ LG+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R
Sbjct: 224 LYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQR 283
Query: 223 NPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
P P L IL K + D+ EDFQI YNP +I +A+
Sbjct: 284 EPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 325
>pdb|2RD8|B Chain B, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
Length = 313
Score = 267 bits (682), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 136/282 (48%), Positives = 176/282 (62%), Gaps = 20/282 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL ++H+ G++K DRTG GTLS+FG Q R++L+ FPLLTTK++ K ++ EL+WF
Sbjct: 32 QYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWF 91
Query: 63 LSGSTXXXXXXXXXXXXWDQWAD------------ENGDLGPIYGYQWRSWPT------- 103
+ GST WD E GDLGP+YG+QWR +
Sbjct: 92 IKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMES 151
Query: 104 -LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQ 162
G+ +DQL VI IKT+P+ RRII+ AWN D+ M LPP H L QFYV N++LSCQ
Sbjct: 152 DYSGQGVDQLQKVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPXHALCQFYVVNSELSCQ 211
Query: 163 LYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222
LYQRS D+ LG+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL R
Sbjct: 212 LYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQR 271
Query: 223 NPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
P P L IL K + D+ EDFQI YNP +I +A+
Sbjct: 272 EPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313
>pdb|4DQ1|A Chain A, Thymidylate Synthase From Staphylococcus Aureus.
pdb|4DQ1|B Chain B, Thymidylate Synthase From Staphylococcus Aureus
Length = 321
Score = 261 bits (666), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 139/311 (44%), Positives = 174/311 (55%), Gaps = 51/311 (16%)
Query: 4 YLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFL 63
Y + V G + DRT GT+S FG+Q+RF+L KGFPLLTTKK+ K + EL+WF+
Sbjct: 12 YHSLCEEVLEIGNTRNDRTNTGTISKFGHQLRFDLSKGFPLLTTKKVSFKLVATELLWFI 71
Query: 64 SGSTXXXXXXXXXXXXWDQWADEN------------------------------------ 87
G T W++WA EN
Sbjct: 72 KGDTNIQYLLKYNNNIWNEWAFENYIKSDEYNGPDMTDFGHRALSDPEFNEQYKEQMKQF 131
Query: 88 --------------GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAW 133
GDLG +YG QWR W G + DQL VI+QIK +P+SRR IVSAW
Sbjct: 132 KQRILEDDTFAKQFGDLGNVYGKQWRDWVDKDGNHFDQLKTVIEQIKHNPDSRRHIVSAW 191
Query: 134 NVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETG 193
N ++I M LPPCH +FQFYV + KLSCQLYQRSADIFLG+PFNIASY+LL H+IA E G
Sbjct: 192 NPTEIDTMALPPCHTMFQFYVQDGKLSCQLYQRSADIFLGVPFNIASYALLTHLIAKECG 251
Query: 194 LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYN 253
L+VG+F+ T GD H+Y NH+D + QL R + P L I KS D N+ED +I Y
Sbjct: 252 LEVGEFVHTFGDAHIYSNHIDAIQTQLARESFNPPTLKI-NSDKSIFDINYEDLEIVDYE 310
Query: 254 PQKSIYAPIAI 264
+I APIA+
Sbjct: 311 SHPAIKAPIAV 321
>pdb|3KGB|A Chain A, Crystal Structure Of Thymidylate Synthase 12 FROM
ENCEPHALITOZOON Cuniculi At 2.2 A Resolution
Length = 294
Score = 248 bits (632), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 123/279 (44%), Positives = 181/279 (64%), Gaps = 22/279 (7%)
Query: 2 HQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKG-FPLLTTKKLHVKSIIYELI 60
HQYL+ ++H+ +G +++DRTG GTLS+FG MRF+L+ FPLLTT+++ + ++ EL+
Sbjct: 10 HQYLDLVKHILENGARRMDRTGTGTLSVFGATMRFSLEDNTFPLLTTRRVFYRGVVEELL 69
Query: 61 WFLSGSTXXXXXXXXXXXXWDQWA-----------DENGDLGPIYGYQWR--------SW 101
+FL G T W++ E GDLGPIYG+QWR S
Sbjct: 70 FFLRGETDSKVLEKKGVRIWEKNGAKQFLQSVGIDREEGDLGPIYGFQWRHFGARYETSA 129
Query: 102 PTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSC 161
+ +GK +DQ++ I I+ +P SRRI+VSAWN +D+ M LPPCH+LFQF V + KLSC
Sbjct: 130 SSYEGKGVDQIASAIAAIRANPASRRIVVSAWNPTDLGSMALPPCHVLFQFNVTDGKLSC 189
Query: 162 QLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLL 221
+YQRS D+ LG+PFNIASYSLL ++AH TGL+ G+F+ GD H+YL+H+D R+Q+
Sbjct: 190 AMYQRSGDMGLGVPFNIASYSLLTILVAHLTGLQPGEFVHFLGDAHVYLDHVDSLRQQIQ 249
Query: 222 RNPGSLPNLTILCK-PKSSLD-YNFEDFQINSYNPQKSI 258
R P + P L + K P++ + + +EDF++ Y+P +I
Sbjct: 250 RPPRAFPKLFVSPKGPRTEPEHFQYEDFELVGYDPHPAI 288
>pdb|3NRR|A Chain A, Co-Crystal Structure Of Dihydrofolate
Reductase-Thymidylate Synthase From Babesia Bovis With
Dump, Raltitrexed And Nadp
pdb|3NRR|B Chain B, Co-Crystal Structure Of Dihydrofolate
Reductase-Thymidylate Synthase From Babesia Bovis With
Dump, Raltitrexed And Nadp
Length = 515
Score = 243 bits (619), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 121/270 (44%), Positives = 168/270 (62%), Gaps = 20/270 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL+ + V + G+ K +RTG S FGYQMRF+L + FPLLTTKK+ ++SII EL+WF
Sbjct: 234 QYLDILADVLSHGVLKPNRTGTDAYSKFGYQMRFDLSRSFPLLTTKKVALRSIIEELLWF 293
Query: 63 LSGSTXXXXXXXXXXXXWD-----QWADENG-------DLGPIYGYQWRSW--------P 102
+ GST W+ + D+NG DLGPIYG+QWR +
Sbjct: 294 IKGSTNGNDLLAKNVRIWELNGRRDFLDKNGFTDREEHDLGPIYGFQWRHFGAEYLDMHA 353
Query: 103 TLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQ 162
GK IDQL+ +I +IKT+PN RR+IV +WNVSD+ KM LPPCH FQFYV++NKLSC
Sbjct: 354 DYTGKGIDQLAEIINRIKTNPNDRRLIVCSWNVSDLKKMALPPCHCFFQFYVSDNKLSCM 413
Query: 163 LYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222
++QRS D+ LG+PFNIASYS+L ++A GL +G+F+ D H+Y++H+D Q+ R
Sbjct: 414 MHQRSCDLGLGVPFNIASYSILTAMVAQVCGLGLGEFVHNLADAHIYVDHVDAVTTQIAR 473
Query: 223 NPGSLPNLTILCKPKSSLDYNFEDFQINSY 252
P P L + ++ D+ +D + Y
Sbjct: 474 IPHPFPRLRLNPDIRNIEDFTIDDIVVEDY 503
>pdb|3I3R|A Chain A, X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis At 2.35a Resolution
pdb|3I3R|B Chain B, X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis At 2.35a Resolution
pdb|3K2H|A Chain A, Co-Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE From Babesia Bovis With Dump, Pemetrexed And
Nadp
pdb|3K2H|B Chain B, Co-Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE From Babesia Bovis With Dump, Pemetrexed And
Nadp
pdb|3KJR|A Chain A, Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis Determined Using Slipchip
Based Microfluidics
pdb|3KJR|B Chain B, Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis Determined Using Slipchip
Based Microfluidics
Length = 511
Score = 243 bits (619), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 121/270 (44%), Positives = 168/270 (62%), Gaps = 20/270 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL+ + V + G+ K +RTG S FGYQMRF+L + FPLLTTKK+ ++SII EL+WF
Sbjct: 230 QYLDILADVLSHGVLKPNRTGTDAYSKFGYQMRFDLSRSFPLLTTKKVALRSIIEELLWF 289
Query: 63 LSGSTXXXXXXXXXXXXWD-----QWADENG-------DLGPIYGYQWRSW--------P 102
+ GST W+ + D+NG DLGPIYG+QWR +
Sbjct: 290 IKGSTNGNDLLAKNVRIWELNGRRDFLDKNGFTDREEHDLGPIYGFQWRHFGAEYLDMHA 349
Query: 103 TLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQ 162
GK IDQL+ +I +IKT+PN RR+IV +WNVSD+ KM LPPCH FQFYV++NKLSC
Sbjct: 350 DYTGKGIDQLAEIINRIKTNPNDRRLIVCSWNVSDLKKMALPPCHCFFQFYVSDNKLSCM 409
Query: 163 LYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222
++QRS D+ LG+PFNIASYS+L ++A GL +G+F+ D H+Y++H+D Q+ R
Sbjct: 410 MHQRSCDLGLGVPFNIASYSILTAMVAQVCGLGLGEFVHNLADAHIYVDHVDAVTTQIAR 469
Query: 223 NPGSLPNLTILCKPKSSLDYNFEDFQINSY 252
P P L + ++ D+ +D + Y
Sbjct: 470 IPHPFPRLRLNPDIRNIEDFTIDDIVVEDY 499
>pdb|1CI7|A Chain A, Ternary Complex Of Thymidylate Synthase From Pneumocystis
Carinii
pdb|1CI7|B Chain B, Ternary Complex Of Thymidylate Synthase From Pneumocystis
Carinii
pdb|1F28|A Chain A, Crystal Structure Of Thymidylate Synthase From
Pneumocystis Carinii Bound To Dump And Bw1843u89
pdb|1F28|B Chain B, Crystal Structure Of Thymidylate Synthase From
Pneumocystis Carinii Bound To Dump And Bw1843u89
pdb|1F28|C Chain C, Crystal Structure Of Thymidylate Synthase From
Pneumocystis Carinii Bound To Dump And Bw1843u89
pdb|1F28|D Chain D, Crystal Structure Of Thymidylate Synthase From
Pneumocystis Carinii Bound To Dump And Bw1843u89
Length = 297
Score = 234 bits (598), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 124/291 (42%), Positives = 181/291 (62%), Gaps = 28/291 (9%)
Query: 2 HQYLNFMRHVYNSGIKKIDRTGVGTLSIFG-YQMRFNLQ-KGFPLLTTKKLHVKSIIYEL 59
QYLN ++++ N G + DRTG GTLS+F ++F+L+ K FPLLTTK++ ++ +I EL
Sbjct: 7 QQYLNLVQYIINHGEDRPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRGVIEEL 66
Query: 60 IWFLSGSTXXXXXXXXXXXXWD-----QWAD-------ENGDLGPIYGYQWRSW------ 101
+WF+ G T WD ++ D + GDLGPIYG+QWR +
Sbjct: 67 LWFIRGETDSLKLREKNIHIWDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFGAEYID 126
Query: 102 --PTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYV---AN 156
G+ +DQL+ +I++I+T P RR+I+SAWN +D+ KM LPPCH+ QFYV +N
Sbjct: 127 CKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWNPADLEKMALPPCHMFCQFYVHIPSN 186
Query: 157 N---KLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHL 213
N +LSCQLYQRS D+ LG+PFNIASY+LL +IAH L GDFI GDCH+Y +H+
Sbjct: 187 NHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHIYKDHI 246
Query: 214 DQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
+ ++QL R+P P L++ D+ +DF I +Y+P ++I ++I
Sbjct: 247 EALQQQLTRSPRPFPTLSLNRSITDIEDFTLDDFNIQNYHPYETIKMKMSI 297
>pdb|3UM5|A Chain A, Double Mutant (A16v+s108t) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts-T994) COMPLEXED WITH Pyrimethamine, Nadph,
And Dump
pdb|3UM5|B Chain B, Double Mutant (A16v+s108t) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts-T994) COMPLEXED WITH Pyrimethamine, Nadph,
And Dump
pdb|3UM6|A Chain A, Double Mutant (A16v+s108t) Plasmodium Falciparum Dhfr-Ts
(T994) Complexed With Cycloguanil, Nadph And Dump
pdb|3UM6|B Chain B, Double Mutant (A16v+s108t) Plasmodium Falciparum Dhfr-Ts
(T994) Complexed With Cycloguanil, Nadph And Dump
Length = 608
Score = 232 bits (591), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/282 (44%), Positives = 166/282 (58%), Gaps = 20/282 (7%)
Query: 2 HQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIW 61
+QYLN + + +G K+ DRTGVG LS FGY M+F+L + FPLLTTKKL ++ II EL+W
Sbjct: 326 YQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELLW 385
Query: 62 FLSGSTXXXXXXXXXXXXWD-----QWAD-------ENGDLGPIYGYQWRS--------W 101
F+ G T W+ ++ D E DLGPIYG+QWR +
Sbjct: 386 FIRGETNGNTLLNKNVRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMY 445
Query: 102 PTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSC 161
+ K +DQL +I IK DP SRRI++ AWNV D+ +M LPPCHIL QFYV + KLSC
Sbjct: 446 DNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKLSC 505
Query: 162 QLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLL 221
+YQRS D+ LG+PFNIASYS+ H+IA L+ FI G+ H+Y NH+D + QL
Sbjct: 506 IMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLN 565
Query: 222 RNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIA 263
R P P L + K+ D+ DF I +Y + I +A
Sbjct: 566 RIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMA 607
>pdb|3JSU|A Chain A, Quadruple Mutant(N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate
Synthase(Pfdhfr-Ts) Complexed With Qn254, Nadph, And
Dump
pdb|3JSU|B Chain B, Quadruple Mutant(N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate
Synthase(Pfdhfr-Ts) Complexed With Qn254, Nadph, And
Dump
pdb|3QG2|A Chain A, Plasmodium Falciparum Dhfr-Ts Qradruple Mutant
(N51i+c59r+s108n+i164l, V1S) PYRIMETHAMINE COMPLEX
pdb|3QG2|B Chain B, Plasmodium Falciparum Dhfr-Ts Qradruple Mutant
(N51i+c59r+s108n+i164l, V1S) PYRIMETHAMINE COMPLEX
pdb|4DP3|A Chain A, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P218 And Nadph
pdb|4DP3|B Chain B, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P218 And Nadph
pdb|4DPH|A Chain A, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P65 And Nadph
pdb|4DPH|B Chain B, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P65 And Nadph
Length = 608
Score = 231 bits (590), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/282 (44%), Positives = 166/282 (58%), Gaps = 20/282 (7%)
Query: 2 HQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIW 61
+QYLN + + +G K+ DRTGVG LS FGY M+F+L + FPLLTTKKL ++ II EL+W
Sbjct: 326 YQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELLW 385
Query: 62 FLSGSTXXXXXXXXXXXXWD-----QWAD-------ENGDLGPIYGYQWRS--------W 101
F+ G T W+ ++ D E DLGPIYG+QWR +
Sbjct: 386 FIRGETNGNTLLNKNVRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMY 445
Query: 102 PTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSC 161
+ K +DQL +I IK DP SRRI++ AWNV D+ +M LPPCHIL QFYV + KLSC
Sbjct: 446 DNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKLSC 505
Query: 162 QLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLL 221
+YQRS D+ LG+PFNIASYS+ H+IA L+ FI G+ H+Y NH+D + QL
Sbjct: 506 IMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLN 565
Query: 222 RNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIA 263
R P P L + K+ D+ DF I +Y + I +A
Sbjct: 566 RIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMA 607
>pdb|3QGT|A Chain A, Crystal Structure Of Wild-Type Pfdhfr-Ts Complexed With
Nadph, Dump And Pyrimethamine
pdb|3QGT|B Chain B, Crystal Structure Of Wild-Type Pfdhfr-Ts Complexed With
Nadph, Dump And Pyrimethamine
pdb|3UM8|A Chain A, Wild-Type Plasmodium Falciparum Dhfr-Ts Complexed With
Cycloguanil And Nadph
pdb|3UM8|B Chain B, Wild-Type Plasmodium Falciparum Dhfr-Ts Complexed With
Cycloguanil And Nadph
pdb|4DPD|A Chain A, Wild Type Plasmodium Falciparum Dihydrofolate
Reductase-Thymidylate Synthase (Pfdhfr-Ts), Dhf Complex,
Nadp+, Dump
pdb|4DPD|B Chain B, Wild Type Plasmodium Falciparum Dihydrofolate
Reductase-Thymidylate Synthase (Pfdhfr-Ts), Dhf Complex,
Nadp+, Dump
Length = 608
Score = 231 bits (590), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/282 (44%), Positives = 166/282 (58%), Gaps = 20/282 (7%)
Query: 2 HQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIW 61
+QYLN + + +G K+ DRTGVG LS FGY M+F+L + FPLLTTKKL ++ II EL+W
Sbjct: 326 YQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELLW 385
Query: 62 FLSGSTXXXXXXXXXXXXWD-----QWAD-------ENGDLGPIYGYQWRS--------W 101
F+ G T W+ ++ D E DLGPIYG+QWR +
Sbjct: 386 FIRGETNGNTLLNKNVRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMY 445
Query: 102 PTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSC 161
+ K +DQL +I IK DP SRRI++ AWNV D+ +M LPPCHIL QFYV + KLSC
Sbjct: 446 DNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKLSC 505
Query: 162 QLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLL 221
+YQRS D+ LG+PFNIASYS+ H+IA L+ FI G+ H+Y NH+D + QL
Sbjct: 506 IMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLN 565
Query: 222 RNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIA 263
R P P L + K+ D+ DF I +Y + I +A
Sbjct: 566 RIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMA 607
>pdb|1J3I|C Chain C, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With Wr99210,
Nadph, And Dump
pdb|1J3I|D Chain D, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With Wr99210,
Nadph, And Dump
pdb|1J3J|C Chain C, Double Mutant (C59r+s108n) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase (Pfdhfr-Ts)
Complexed With Pyrimethamine, Nadph, And Dump
pdb|1J3J|D Chain D, Double Mutant (C59r+s108n) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase (Pfdhfr-Ts)
Complexed With Pyrimethamine, Nadph, And Dump
pdb|1J3K|C Chain C, Quadruple Mutant (n51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-thymidylate Synthase
(pfdhfr-ts) Complexed With Wr99210, Nadph, And Dump
pdb|1J3K|D Chain D, Quadruple Mutant (n51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-thymidylate Synthase
(pfdhfr-ts) Complexed With Wr99210, Nadph, And Dump
pdb|3DG8|C Chain C, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With Rjf670, Nadph, And Dump
pdb|3DG8|D Chain D, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With Rjf670, Nadph, And Dump
pdb|3DGA|C Chain C, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With
Rjf01302, Nadph, And Dump
pdb|3DGA|D Chain D, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With
Rjf01302, Nadph, And Dump
Length = 328
Score = 230 bits (587), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 124/282 (43%), Positives = 164/282 (58%), Gaps = 20/282 (7%)
Query: 2 HQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIW 61
+QYLN + + +G K+ DRTGVG LS FGY M+F+L + FPLLTTKKL ++ II EL+W
Sbjct: 46 YQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELLW 105
Query: 62 FLSGSTXXXXXXXXXXXXWDQ------------WADENGDLGPIYGYQWRS--------W 101
F+ G T W+ + E DLGPIYG+QWR +
Sbjct: 106 FIRGETNGNTLLNKNVRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMY 165
Query: 102 PTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSC 161
+ K +DQL +I IK DP SRRI++ AWNV D+ +M LPPCHIL QFYV + KLSC
Sbjct: 166 DNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKLSC 225
Query: 162 QLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLL 221
+YQRS D+ LG+PFNIASYS+ H+IA L+ FI G+ H+Y NH+D + QL
Sbjct: 226 IMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLN 285
Query: 222 RNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIA 263
R P P L + K+ D+ DF I +Y + I +A
Sbjct: 286 RIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMA 327
>pdb|2H2Q|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydrofolate
Reductase- Thymidylate Synthase
pdb|2H2Q|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydrofolate
Reductase- Thymidylate Synthase
pdb|3CL9|A Chain A, Structure Of Bifunctional Tcdhfr-Ts In Complex With Mtx
pdb|3CLB|A Chain A, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3CLB|B Chain B, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3CLB|C Chain C, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3CLB|D Chain D, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3HBB|A Chain A, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3HBB|B Chain B, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3HBB|C Chain C, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3HBB|D Chain D, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3KJS|A Chain A, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
pdb|3KJS|B Chain B, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
pdb|3KJS|C Chain C, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
pdb|3KJS|D Chain D, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
Length = 521
Score = 228 bits (581), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 118/284 (41%), Positives = 167/284 (58%), Gaps = 21/284 (7%)
Query: 2 HQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKG-FPLLTTKKLHVKSIIYELI 60
QYL+ + + G K DRTGVGTLSIFG QMRF+L+ PLLTTK++ + + EL+
Sbjct: 238 EQYLSLVDRIIREGNVKHDRTGVGTLSIFGAQMRFSLRNNRLPLLTTKRVFWRGVCEELL 297
Query: 61 WFLSGSTXXXXXXXXXXXXWDQ-----WADENG-------DLGPIYGYQWRSW------- 101
WFL G T WD + D G DLGP+YG+QWR +
Sbjct: 298 WFLRGETYAKKLSDKGVHIWDDNGSRAFLDSRGLTEYEEMDLGPVYGFQWRHFGAAYTHH 357
Query: 102 -PTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLS 160
G+ +DQ+ +++ +KT+P+ RR++ +AWN S + +M LPPCH+L QFYV+N +LS
Sbjct: 358 DANYDGQGVDQIKAIVETLKTNPDDRRMLFTAWNPSALPRMALPPCHLLAQFYVSNGELS 417
Query: 161 CQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQL 220
C LYQRS D+ LG+PFNIASY+LL +IA TGL+ G+ + T GD H+Y NH++ +QL
Sbjct: 418 CMLYQRSCDMGLGVPFNIASYALLTILIAKATGLRPGELVHTLGDAHVYSNHVEPCNEQL 477
Query: 221 LRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
R P + P L + + DY D ++ Y P I +A+
Sbjct: 478 KRVPRAFPYLVFRREREFLEDYEEGDMEVIDYAPYPPISMKMAV 521
>pdb|3INV|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph, Dump And C-448 Antifolate
pdb|3INV|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph, Dump And C-448 Antifolate
pdb|3IRM|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRM|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRM|C Chain C, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRM|D Chain D, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRN|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRN|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRN|C Chain C, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRN|D Chain D, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRO|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
pdb|3IRO|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
pdb|3IRO|C Chain C, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
pdb|3IRO|D Chain D, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
Length = 521
Score = 228 bits (580), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 118/284 (41%), Positives = 167/284 (58%), Gaps = 21/284 (7%)
Query: 2 HQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKG-FPLLTTKKLHVKSIIYELI 60
QYL+ + + G K DRTGVGTLSIFG QMRF+L+ PLLTTK++ + + EL+
Sbjct: 238 EQYLSLVDRIIREGNVKHDRTGVGTLSIFGAQMRFSLRNNRLPLLTTKRVFWRGVCEELL 297
Query: 61 WFLSGSTXXXXXXXXXXXXWDQ-----WADENG-------DLGPIYGYQWRSW------- 101
WFL G T WD + D G DLGP+YG+QWR +
Sbjct: 298 WFLRGETYAKKLSDKGVHIWDDNGSRAFLDSRGLTEYEEMDLGPVYGFQWRHFGAAYTHH 357
Query: 102 -PTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLS 160
G+ +DQ+ +++ +KT+P+ RR++ +AWN S + +M LPPCH+L QFYV+N +LS
Sbjct: 358 DANYDGQGVDQIKAIVETLKTNPDDRRMLFTAWNPSALPRMALPPCHLLAQFYVSNGELS 417
Query: 161 CQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQL 220
C LYQRS D+ LG+PFNIASY+LL +IA TGL+ G+ + T GD H+Y NH++ +QL
Sbjct: 418 CMLYQRSCDMGLGVPFNIASYALLTILIAKATGLRPGELVHTLGDAHVYSNHVEPCNEQL 477
Query: 221 LRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
R P + P L + + DY D ++ Y P I +A+
Sbjct: 478 KRVPRAFPYLVFRREREFLEDYEEGDMEVIDYAPYPPISMKMAV 521
>pdb|1TIS|A Chain A, Crystal Structure Of Thymidylate Synthase From T4 Phage
Length = 286
Score = 219 bits (558), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/291 (41%), Positives = 169/291 (58%), Gaps = 32/291 (10%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
M QY + ++ ++ +G + DRTG GT+++FG ++R++L KGFP +TTKKL K+ I ELI
Sbjct: 1 MKQYQDLIKDIFENGYETDDRTGTGTIALFGSKLRWDLTKGFPAVTTKKLAWKACIAELI 60
Query: 61 WFLSGSTXXXXXXXXX-------XXXWDQWADE--------NGDLGPIYGYQWRSWPTLQ 105
WFLSGST WD+ + +G+LGPIYG QWR +
Sbjct: 61 WFLSGSTNVNDLRLIQHDSLIQGKTVWDENYENQAKDLGYHSGELGPIYGKQWRDFGG-- 118
Query: 106 GKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQ 165
+DQ+ VI +IK PN RR IVSAWN +++ M LPPCH+ +QF V N L Q YQ
Sbjct: 119 ---VDQIIEVIDRIKKLPNDRRQIVSAWNPAELKYMALPPCHMFYQFNVRNGYLDLQWYQ 175
Query: 166 RSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPG 225
RS D+FLGLPFNIASY+ L+HI+A L GD I++GG+ H+Y+NH++Q ++ L R P
Sbjct: 176 RSVDVFLGLPFNIASYATLVHIVAKMCNLIPGDLIFSGGNTHIYMNHVEQCKEILRREPK 235
Query: 226 SLPNLTILCKP--------KSSLDYNF----EDFQINSYNPQKSIYAPIAI 264
L L I P K L Y +DF +N+Y I +A+
Sbjct: 236 ELCELVISGLPYKFRYLSTKEQLKYVLKLRPKDFVLNNYVSHPPIKGKMAV 286
>pdb|1QZF|A Chain A, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|B Chain B, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|C Chain C, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|D Chain D, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|E Chain E, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1SEJ|A Chain A, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|B Chain B, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|C Chain C, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|D Chain D, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|E Chain E, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
Length = 521
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/283 (40%), Positives = 164/283 (57%), Gaps = 21/283 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL+ + V +G + +RTG+ T SIFG MRF++++ FPLLTTKK+ ++SI ELIWF
Sbjct: 239 QYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRSIFEELIWF 298
Query: 63 LSGSTXXXXXXXXXXXXWDQWAD------------ENGDLGPIYGYQWR----SWPTLQG 106
+ G T W E DLGPIYG+QWR + T+
Sbjct: 299 IKGDTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMHD 358
Query: 107 KY----IDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVAN-NKLSC 161
Y +DQL+ +I+ +K +P RR I++AWN S + +M LPPCH+L Q+YV N N LSC
Sbjct: 359 DYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNCLSC 418
Query: 162 QLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLL 221
LYQRS D+ LG PFNIASY++L ++A G + G+ GD H+Y NHL Q ++QL
Sbjct: 419 NLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQLS 478
Query: 222 RNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
R P P L K ++ D+ +ED ++ Y P +I +A+
Sbjct: 479 RTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 521
>pdb|3HJ3|A Chain A, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|B Chain B, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|C Chain C, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|D Chain D, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
Length = 521
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/283 (40%), Positives = 164/283 (57%), Gaps = 21/283 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL+ + V +G + +RTG+ T SIFG MRF++++ FPLLTTKK+ ++SI ELIWF
Sbjct: 239 QYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRSIFEELIWF 298
Query: 63 LSGSTXXXXXXXXXXXXWDQWAD------------ENGDLGPIYGYQWR----SWPTLQG 106
+ G T W E DLGPIYG+QWR + T+
Sbjct: 299 IKGDTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMHD 358
Query: 107 KY----IDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVAN-NKLSC 161
Y +DQL+ +I+ +K +P RR I++AWN S + +M LPPCH+L Q+YV N N LSC
Sbjct: 359 DYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNCLSC 418
Query: 162 QLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLL 221
LYQRS D+ LG PFNIASY++L ++A G + G+ GD H+Y NHL Q ++QL
Sbjct: 419 NLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQLS 478
Query: 222 RNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
R P P L K ++ D+ +ED ++ Y P +I +A+
Sbjct: 479 RTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 521
>pdb|3DL5|A Chain A, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|B Chain B, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|C Chain C, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|D Chain D, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|E Chain E, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
Length = 521
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/283 (40%), Positives = 164/283 (57%), Gaps = 21/283 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL+ + V +G + +RTG+ T SIFG MRF++++ FPLLTTKK+ ++SI ELIWF
Sbjct: 239 QYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVFIRSIFEELIWF 298
Query: 63 LSGSTXXXXXXXXXXXXWDQWAD------------ENGDLGPIYGYQWR----SWPTLQG 106
+ G T W E DLGPIYG+QWR + T+
Sbjct: 299 IKGDTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMHD 358
Query: 107 KY----IDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVAN-NKLSC 161
Y +DQL+ +I+ +K +P RR I++AWN S + +M LPPCH+L Q+YV N N LSC
Sbjct: 359 DYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNCLSC 418
Query: 162 QLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLL 221
LYQRS D+ LG PFNIASY++L ++A G + G+ GD H+Y NHL Q ++QL
Sbjct: 419 NLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQLS 478
Query: 222 RNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
R P P L K ++ D+ +ED ++ Y P +I +A+
Sbjct: 479 RTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 521
>pdb|2OIP|A Chain A, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|B Chain B, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|C Chain C, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|D Chain D, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|E Chain E, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
Length = 519
Score = 217 bits (552), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 115/283 (40%), Positives = 163/283 (57%), Gaps = 21/283 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL+ + V +G + +RTG+ T SIFG MRF++++ FPLLTTKK+ ++ I ELIWF
Sbjct: 237 QYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRGIFEELIWF 296
Query: 63 LSGSTXXXXXXXXXXXXWDQWAD------------ENGDLGPIYGYQWR----SWPTLQG 106
+ G T W E DLGPIYG+QWR + T+
Sbjct: 297 IKGDTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMHD 356
Query: 107 KY----IDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVAN-NKLSC 161
Y +DQL+ +I+ +K +P RR I++AWN S + +M LPPCH+L Q+YV N N LSC
Sbjct: 357 DYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNCLSC 416
Query: 162 QLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLL 221
LYQRS D+ LG PFNIASY++L ++A G + G+ GD H+Y NHL Q ++QL
Sbjct: 417 NLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQLS 476
Query: 222 RNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
R P P L K ++ D+ +ED ++ Y P +I +A+
Sbjct: 477 RTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 519
>pdb|3DL6|A Chain A, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|B Chain B, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|C Chain C, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|D Chain D, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|E Chain E, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
Length = 521
Score = 217 bits (552), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 115/283 (40%), Positives = 163/283 (57%), Gaps = 21/283 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL+ + V +G + +RTG+ T SIFG MRF++++ FPLLTTKK+ ++ I ELIWF
Sbjct: 239 QYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVFIRGIFEELIWF 298
Query: 63 LSGSTXXXXXXXXXXXXWDQWAD------------ENGDLGPIYGYQWR----SWPTLQG 106
+ G T W E DLGPIYG+QWR + T+
Sbjct: 299 IKGDTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMHD 358
Query: 107 KY----IDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVAN-NKLSC 161
Y +DQL+ +I+ +K +P RR I++AWN S + +M LPPCH+L Q+YV N N LSC
Sbjct: 359 DYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNCLSC 418
Query: 162 QLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLL 221
LYQRS D+ LG PFNIASY++L ++A G + G+ GD H+Y NHL Q ++QL
Sbjct: 419 NLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQLS 478
Query: 222 RNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
R P P L K ++ D+ +ED ++ Y P +I +A+
Sbjct: 479 RTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 521
>pdb|2AAZ|A Chain A, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|B Chain B, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|C Chain C, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|D Chain D, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|E Chain E, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|F Chain F, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|G Chain G, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|H Chain H, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|I Chain I, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|J Chain J, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|K Chain K, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|L Chain L, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|M Chain M, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|N Chain N, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|O Chain O, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|P Chain P, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
Length = 317
Score = 200 bits (509), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 113/287 (39%), Positives = 156/287 (54%), Gaps = 34/287 (11%)
Query: 2 HQYLNFMRHVYNSGIKKIDRTGVGTLSIFGY-QMRFNLQKG-FPLLTTKKLHVKSIIYEL 59
+QYL+ +R + N G + DRTG GT+++F RF+L PLLTTK++ ++ +I EL
Sbjct: 21 YQYLDLIRRIINVGEVRPDRTGTGTVALFAPPSFRFSLADNTLPLLTTKRVFLRGVIAEL 80
Query: 60 IWFLSGSTXXXXXXXXXXXXWDQWADEN------------GDLGPIYGYQWRSWPT---- 103
+WF+SG T WD + GDLGP+YG+QWR +
Sbjct: 81 LWFVSGCTDAKMLSSQGVGIWDGNGSKEFLEKVGLGHRREGDLGPVYGFQWRHFGAEYTD 140
Query: 104 ----LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVA---- 155
+GK +DQL VI IK +P RRII+SAWN D+ M LPPCH+ QF+V+
Sbjct: 141 ADGDYKGKGVDQLQRVIDTIKNNPTDRRIILSAWNPKDLPLMALPPCHMFCQFFVSLPPA 200
Query: 156 -----NNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYL 210
KLSC +YQRS D+ LG+PFNIASY+LL H+IA T + +FI GD H+Y
Sbjct: 201 DSPGSKPKLSCLMYQRSCDLGLGVPFNIASYALLTHMIALITDTEPHEFILQMGDAHVYR 260
Query: 211 NHLDQARKQLLRNPGSLPNLTILCKPKSSLD---YNFEDFQINSYNP 254
+H++ + QL R P P L + D + EDF + Y P
Sbjct: 261 DHVEPLKTQLEREPRDFPKLKWARSKEEIGDIDGFKVEDFVVEGYKP 307
>pdb|3V8H|A Chain A, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
pdb|3V8H|B Chain B, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
pdb|3V8H|C Chain C, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
pdb|3V8H|D Chain D, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
Length = 327
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/323 (32%), Positives = 153/323 (47%), Gaps = 59/323 (18%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
M QYL+ +R + ++G + +RTG+ T+ I G +RF+LQ+GFP +TTKKL KS I EL+
Sbjct: 5 MKQYLDLVRTILDTGTWQSNRTGIRTIGIPGAMLRFDLQQGFPAVTTKKLAFKSAIGELV 64
Query: 61 WFLSGSTXXXXXXXXXXXXWDQWADENG------------DLGPIYGYQWRSWP------ 102
FL + WD A+EN DLG +YG QWR WP
Sbjct: 65 GFLRATRSAAEFRALGCKVWDANANENAQWLANPYRRGADDLGDVYGVQWRRWPGYKVLD 124
Query: 103 ----------------------------TLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWN 134
L K IDQL + I DP+SRRI+ WN
Sbjct: 125 AHADAQIADATSRGFRIVARFEEGGADKVLLHKAIDQLRDCLDTIVRDPSSRRILFHGWN 184
Query: 135 VSDIHKMKLPPCHILFQFY--VANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHET 192
+ + ++ LP CH+L+QF V ++S LY RS D+ LG PFN+A + L+ ++ T
Sbjct: 185 PAVLDEIALPACHLLYQFLPNVERREISLCLYIRSNDVGLGTPFNLAEGAALLTLVGRLT 244
Query: 193 GLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCK-PKSSLDYNFE------ 245
G F + GD H+Y N LD ++QL R P P L + + P + +E
Sbjct: 245 GYSPRWFTYFIGDAHIYENQLDMLKQQLEREPFESPRLELAERVPDYAKTGKYEPQWLER 304
Query: 246 ----DFQINSYNPQKSIYAPIAI 264
DF + Y + + AP+A+
Sbjct: 305 VEPSDFTLVGYRHHEPLSAPMAV 327
>pdb|1BKO|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|C Chain C, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|D Chain D, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKP|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKP|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSF|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSF|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSP|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSP|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
Length = 278
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 145/274 (52%), Gaps = 13/274 (4%)
Query: 3 QYLNFMRHVYNSGIKK----------IDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHV 52
QY + ++ + N+GI D T TLS+ QMRF+ P+LTTKK+
Sbjct: 6 QYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFD-NSEVPILTTKKVAW 64
Query: 53 KSIIYELIWFLS-GSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQW-RSWPTLQGKYID 110
K+ I EL+W S WDQW E+G +G YG+Q + +L G+ +D
Sbjct: 65 KTAIKELLWIWQLKSNDVNDLNMMGVHIWDQWKQEDGTIGHAYGFQLGKKNRSLNGEKVD 124
Query: 111 QLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADI 170
Q+ ++ Q+K +P+SRR I WN ++ M L PC Q+YV + KL ++ RS D+
Sbjct: 125 QVDYLLHQLKNNPSSRRHITMLWNPDELDAMALTPCVYETQWYVKHGKLHLEVRARSNDM 184
Query: 171 FLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNL 230
LG PFN+ Y++L +IA TG ++G++I+ GDCH+Y H+D + Q+ R P L
Sbjct: 185 ALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCHVYTRHIDNLKIQMEREQFEAPEL 244
Query: 231 TILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
I + K D+ +DF++ +Y + +A+
Sbjct: 245 WINPEVKDFYDFTIDDFKLINYKHGDKLLFEVAV 278
>pdb|1B02|A Chain A, Crystal Structure Of Thymidylate Synthase A From Bacillus
Subtilis
Length = 279
Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 145/274 (52%), Gaps = 13/274 (4%)
Query: 3 QYLNFMRHVYNSGIKK----------IDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHV 52
QY + ++ + N+GI D T TLS+ QMRF+ P+LTTKK+
Sbjct: 7 QYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFD-NSEVPILTTKKVAW 65
Query: 53 KSIIYELIWFLS-GSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQW-RSWPTLQGKYID 110
K+ I EL+W S WDQW E+G +G YG+Q + +L G+ +D
Sbjct: 66 KTAIKELLWIWQLKSNDVNDLNMMGVHIWDQWKQEDGTIGHAYGFQLGKKNRSLNGEKVD 125
Query: 111 QLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADI 170
Q+ ++ Q+K +P+SRR I WN ++ M L PC Q+YV + KL ++ RS D+
Sbjct: 126 QVDYLLHQLKNNPSSRRHITMLWNPDELDAMALTPCVYETQWYVKHGKLHLEVRARSNDM 185
Query: 171 FLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNL 230
LG PFN+ Y++L +IA TG ++G++I+ GDCH+Y H+D + Q+ R P L
Sbjct: 186 ALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCHVYTRHIDNLKIQMEREQFEAPEL 245
Query: 231 TILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
I + K D+ +DF++ +Y + +A+
Sbjct: 246 WINPEVKDFYDFTIDDFKLINYKHGDKLLFEVAV 279
>pdb|1B5D|A Chain A, Dcmp Hydroxymethylase From T4 (Intact)
pdb|1B5E|A Chain A, Dcmp Hydroxymethylase From T4
pdb|1B49|A Chain A, Dcmp Hydroxymethylase From T4 (Phosphate-Bound)
pdb|1B49|C Chain C, Dcmp Hydroxymethylase From T4 (Phosphate-Bound)
pdb|1B5D|B Chain B, Dcmp Hydroxymethylase From T4 (Intact)
pdb|1B5E|B Chain B, Dcmp Hydroxymethylase From T4
Length = 246
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 81/207 (39%), Gaps = 22/207 (10%)
Query: 19 IDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTXXXXXXXXXXX 78
+D+TGV T+ I G F + F L+ + I EL W+ S S
Sbjct: 26 VDKTGVKTIEIIG--ASFVADEPFIF---GALNDEYIQRELEWYKSKSLFVKDIPGETPK 80
Query: 79 XWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVS-- 136
W Q A G++ YG W W + Y Q + ++ +P+SRR I+ S
Sbjct: 81 IWQQVASSKGEINSNYG--WAIWS--EDNYA-QYDMCLAELGQNPDSRRGIMIYTRPSMQ 135
Query: 137 -DIHKMKLPP--CHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETG 193
D +K + C Q+ + + K++ + RS D+ G + A ++ + +
Sbjct: 136 FDYNKDGMSDFMCTNTVQYLIRDKKINAVVNMRSNDVVFGFRNDYAWQKYVLDKLVSDLN 195
Query: 194 L-------KVGDFIWTGGDCHLYLNHL 213
K G IW G H+Y H
Sbjct: 196 AGDSTRQYKAGSIIWNVGSLHVYSRHF 222
>pdb|3AU7|A Chain A, Crystal Structure Of The Zrd-Deleted Mutant Of Tias In
Complex With Agmatine
Length = 402
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 104 LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHIL--FQFYVANNKLSC 161
++G+ ++ L ++ +KT+P RR+I + +D+H + H L ++ Y +++
Sbjct: 236 IRGESVEALYKAMESVKTEPVDRRMIFVTNHATDMHLIGEEEVHRLENYRSYRLRGRVTL 295
Query: 162 QLY 164
+ Y
Sbjct: 296 EPY 298
>pdb|3AMU|A Chain A, Crystal Structure Of The Tias-Trna(Ile2)-Ampcpp-Agmatine
Complex
Length = 440
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 104 LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHIL--FQFYVANNKLSC 161
++G+ ++ L ++ +KT+P RR+I + +D+H + H L ++ Y +++
Sbjct: 236 IRGESVEALYKAMESVKTEPVDRRMIFVTNHATDMHLIGEEEVHRLENYRSYRLRGRVTL 295
Query: 162 QLY 164
+ Y
Sbjct: 296 EPY 298
>pdb|2W45|A Chain A, Epstein-Barr Virus Alkaline Nuclease
pdb|2W45|B Chain B, Epstein-Barr Virus Alkaline Nuclease
Length = 470
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 131 SAWNVSDIHKMKLPPCHILFQFYVANNK 158
AWN+ D+ K KL P H L +A N+
Sbjct: 290 EAWNLKDVRKRKLGPGHDLVADSLAANR 317
>pdb|2W4B|A Chain A, Epstein-Barr Virus Alkaline Nuclease D203s Mutant
pdb|2W4B|B Chain B, Epstein-Barr Virus Alkaline Nuclease D203s Mutant
Length = 470
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 131 SAWNVSDIHKMKLPPCHILFQFYVANNK 158
AWN+ D+ K KL P H L +A N+
Sbjct: 290 EAWNLKDVRKRKLGPGHDLVADSLAANR 317
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,269,257
Number of Sequences: 62578
Number of extensions: 339685
Number of successful extensions: 824
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 592
Number of HSP's gapped (non-prelim): 129
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)