Query psy2405
Match_columns 264
No_of_seqs 145 out of 1163
Neff 6.5
Searched_HMMs 46136
Date Sat Aug 17 00:09:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2405.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2405hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03284 thym_sym thymidylate 100.0 3.2E-99 7E-104 686.9 23.2 263 2-264 1-296 (296)
2 PRK01827 thyA thymidylate synt 100.0 7.1E-98 2E-102 672.5 23.0 264 1-264 1-264 (264)
3 PRK13821 thyA thymidylate synt 100.0 1.6E-96 3E-101 674.8 23.4 264 1-264 1-323 (323)
4 COG0207 ThyA Thymidylate synth 100.0 4.6E-95 1E-99 646.7 25.3 264 1-264 3-268 (268)
5 KOG0673|consensus 100.0 1.4E-92 3.1E-97 614.7 18.9 263 2-264 11-293 (293)
6 PTZ00164 bifunctional dihydrof 100.0 2.2E-90 4.8E-95 673.0 23.8 264 1-264 231-514 (514)
7 PF00303 Thymidylat_synt: Thym 100.0 1.3E-86 2.9E-91 603.5 18.5 264 1-264 1-269 (269)
8 cd00351 TS_Pyrimidine_HMase Th 100.0 2.4E-71 5.2E-76 488.8 18.9 214 3-217 1-215 (215)
9 PRK00956 thyA thymidylate synt 100.0 9.5E-52 2.1E-56 362.4 17.5 196 2-221 12-207 (208)
10 TIGR03283 thy_syn_methano thym 100.0 3.1E-50 6.6E-55 350.5 15.3 189 2-215 10-198 (199)
11 cd00136 PDZ PDZ domain, also c 21.8 1.5E+02 0.0032 20.1 3.6 37 188-224 25-61 (70)
No 1
>TIGR03284 thym_sym thymidylate synthase. Members of this protein family are thymidylate synthase, an enzyme that produces dTMP from dUMP. In prokaryotes, its gene usually is found close to that for dihydrofolate reductase, and in some systems the two enzymes are found as a fusion protein. This model excludes a set of related proteins (TIGR03283) that appears to replace this family in archaeal methanogens, where tetrahydrofolate is replaced by tetrahydromethanopterin.
Probab=100.00 E-value=3.2e-99 Score=686.90 Aligned_cols=263 Identities=60% Similarity=1.092 Sum_probs=258.7
Q ss_pred hHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcccccCCCChHHHhhCCccccc
Q psy2405 2 HQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIWD 81 (264)
Q Consensus 2 ~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~iW~ 81 (264)
+||+++|++||++|+.+.+|||++|+++||+++||||+++||++||||++||++++||+|||+|+||+++|++.|++|||
T Consensus 1 ~qYl~l~~~Il~~G~~~~drtG~gt~s~fg~~~r~dl~~~fPllTTKk~~~k~~i~ElLWfl~G~tn~~~L~~~~v~IWd 80 (296)
T TIGR03284 1 KQYLDLLRDILENGHQKGDRTGTGTISVFGYQMRFDLSKGFPLLTTKKVPFRLIASELLWFLKGDTNIRYLLDHNVNIWD 80 (296)
T ss_pred ChHHHHHHHHHHhCCcCCCCCCCcccccccceEEEeCCCCcceeeeechhHHHHHHHHHHHHhCCccHHHHHHcCCeecC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc---------------------------------CCCCCccccccccccccCCCCccchHHHHHHHHhcCCCCccc
Q psy2405 82 QWADE---------------------------------NGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRI 128 (264)
Q Consensus 82 ~~~~~---------------------------------~g~~g~~YG~~~r~~~~~~g~~~dQl~~vi~~Lk~~p~sRR~ 128 (264)
+|+++ +|++|++||+|||+|++.+|+++|||++||++||+||+|||+
T Consensus 81 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GdlGpvYG~qwr~~~~~~g~~iDQi~~vI~~Lk~nP~sRR~ 160 (296)
T TIGR03284 81 EWAFERWVKSDDYQGPDMTDFGLRAQDDEEEDDEFADKYGDLGPVYGKQWRSWATPDGETIDQIKNVIEMIKTNPDSRRL 160 (296)
T ss_pred CcccccccccccccccccccccccccccccccccccccCCCCccchhhhheeccCCCCCchHHHHHHHHHHhcCCchhhe
Confidence 99865 699999999999999988888899999999999999999999
Q ss_pred EEEccCccccccCCCCCcceEEEEEEECCeEEEEEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEeccccc
Q psy2405 129 IVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHL 208 (264)
Q Consensus 129 ii~~w~p~d~~~~~~~PC~~~~qf~v~~gkL~l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HI 208 (264)
|+++|||.++++|+|||||.++||+|++|+|+|+++|||||+++|+|||+++|++||+|||+.||+++|+|+|+++|+||
T Consensus 161 iv~~wnp~dl~~m~lpPCh~~~QF~V~dgkL~~~~~qRS~D~~lG~pfNiasyalL~~mvA~~~Gl~~G~~~h~igdaHI 240 (296)
T TIGR03284 161 IVSAWNPEDVPSMALPPCHTLFQFYVADGKLSCQLYQRSADVFLGVPFNIASYALLTHMIAQETGLEVGEFVHTLGDAHL 240 (296)
T ss_pred EEEeeChhhhhccCCccceEEEEEEEeCCEEEEEEEEechhhhhhhhhhHHHHHHHHHHHHHHhCCEeEEEEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHhhcCCCCCCeEEeCCCCCCCCCcccCcEEEeCCCCCCCCCccccC
Q psy2405 209 YLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264 (264)
Q Consensus 209 Y~~~~~~~~~~l~r~p~~~P~l~~~~~~~~~~~~~~~df~l~~Y~~~p~i~~~~av 264 (264)
|+||+++|++||+|+|+++|+|+|++++++|+||+++||+|+||+|||+||+||||
T Consensus 241 Y~nhi~~v~~qL~R~p~~~P~l~i~~~~~~i~d~~~~Df~l~~Y~~hp~ik~~~av 296 (296)
T TIGR03284 241 YSNHLEQAKLQLTREPRPLPKLKLNPEKKDIFDFEYEDIELEGYDPHPAIKAPVAV 296 (296)
T ss_pred ehhHHHHHHHHhcCCCCCCCEEEECCCCCccccCChhHEEEeCCCCCCcCCccccC
Confidence 99999999999999999999999999999999999999999999999999999998
No 2
>PRK01827 thyA thymidylate synthase; Reviewed
Probab=100.00 E-value=7.1e-98 Score=672.48 Aligned_cols=264 Identities=65% Similarity=1.163 Sum_probs=260.5
Q ss_pred ChHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcccccCCCChHHHhhCCcccc
Q psy2405 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIW 80 (264)
Q Consensus 1 ~~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~iW 80 (264)
|+||+++|++||++|+.+.||||++|+++||+++|||++++||++|+||++|+++++|++|||+|++|+++|++++++||
T Consensus 1 m~~Yl~l~~~Il~~G~~~~drTg~~t~~i~g~~~r~dl~~~fPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iW 80 (264)
T PRK01827 1 MKQYLDLLRKILDEGTKKNDRTGTGTLSVFGAQMRFDLSKGFPLLTTKKVHFKSIIHELLWFLRGDTNIAYLQENGVHIW 80 (264)
T ss_pred ChHHHHHHHHHHHhCCCCCCCCCCceEEeccceEEEECCCCCcccccccccHHHHHHHHHHHHcCCCcHHHHHHhCCChh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCccccccccccccCCCCccchHHHHHHHHhcCCCCcccEEEccCccccccCCCCCcceEEEEEEECCeEE
Q psy2405 81 DQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLS 160 (264)
Q Consensus 81 ~~~~~~~g~~g~~YG~~~r~~~~~~g~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~d~~~~~~~PC~~~~qf~v~~gkL~ 160 (264)
++|+.++|++|++||+|||+|++++|+++|||++||++||+||+|||+++++|||.+++++++||||..+||.|++|+|+
T Consensus 81 d~~~~~~g~lg~~YG~q~r~~~~~~g~~~DQl~~vI~~Lk~np~sRR~ii~~wnp~dl~~~~l~PC~~~~qf~V~~g~L~ 160 (264)
T PRK01827 81 DEWADENGDLGPVYGKQWRSWPTPDGRHIDQISKVIEQLKTNPDSRRLIVSAWNPGELDKMALPPCHALFQFYVADGKLS 160 (264)
T ss_pred hhccccCCccCCcchHHHhcCcCCCCchHHHHHHHHHHHhcCCCchhheeeeeCHhHhhcccCCceEEEEEEEEeCCEEE
Confidence 99998999999999999999987778889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEecccccchhhHHHHHHHhhcCCCCCCeEEeCCCCCCCC
Q psy2405 161 CQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 240 (264)
Q Consensus 161 l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l~r~p~~~P~l~~~~~~~~~~ 240 (264)
|+++|||||+++|+|||+++|++||+|||+.||+++|+|+|+++|+|||++|+++|++||+|+|+++|+|+|++++++|+
T Consensus 161 ~~~~qRS~D~~lG~p~Ni~~y~~L~~~vA~~~gl~~G~~~h~~g~~HIY~~h~~~~~~ql~r~p~~~P~l~i~~~~~~~~ 240 (264)
T PRK01827 161 CQLYQRSADVFLGVPFNIASYALLTHMIAQQTGLKVGEFVHTIGDAHIYSNHLEQAREQLSREPRPLPKLVINPDIKSIF 240 (264)
T ss_pred EEEEEehhhhhccccchHHHHHHHHHHHHHHcCCeeEEEEEEEeeEEEEhhHhhHHHHHhcCCCCCCCEEEECCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCcEEEeCCCCCCCCCccccC
Q psy2405 241 DYNFEDFQINSYNPQKSIYAPIAI 264 (264)
Q Consensus 241 ~~~~~df~l~~Y~~~p~i~~~~av 264 (264)
||+++||+|+||+|||+||+||||
T Consensus 241 ~~~~~Df~l~~Y~~~p~ik~~~av 264 (264)
T PRK01827 241 DFEFEDFELEGYDPHPAIKAPVAV 264 (264)
T ss_pred cCCHhHEEEeCCCCCCcCCccccC
Confidence 999999999999999999999998
No 3
>PRK13821 thyA thymidylate synthase; Provisional
Probab=100.00 E-value=1.6e-96 Score=674.80 Aligned_cols=264 Identities=40% Similarity=0.682 Sum_probs=252.7
Q ss_pred ChHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcccccCCCChHHHhhCCcccc
Q psy2405 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIW 80 (264)
Q Consensus 1 ~~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~iW 80 (264)
|+||+++|++||++|..+.+|||++|+++||+++||||++|||++||||++||+++.||+|||+|+||+++|++.+++||
T Consensus 1 m~qYldl~~~Il~~G~~~~dRTGtgt~sifg~~~rfdL~~gfPllTTKkv~~ks~i~ELLWfl~G~tn~~~L~~~~v~IW 80 (323)
T PRK13821 1 MKQYLDLVRTILDTGTWQENRTGIRTISIPGAMLRFDLQQGFPAVTTKKLAFKSAIGELVGFLRASRSAADFRALGCKVW 80 (323)
T ss_pred CHHHHHHHHHHHHhCCcCCCCCCCccccccCceEEEECCCCCceeEeecchHHHHHHHHHHHHhCCCcHHHHHHcCCccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc------------CCCCCccccccccccccC---------------------------CC-------CccchHHH
Q psy2405 81 DQWADE------------NGDLGPIYGYQWRSWPTL---------------------------QG-------KYIDQLSG 114 (264)
Q Consensus 81 ~~~~~~------------~g~~g~~YG~~~r~~~~~---------------------------~g-------~~~dQl~~ 114 (264)
|+|+++ +|++|++||+|||+|++. +| +++|||++
T Consensus 81 d~~~~~~~~~~~~~~~~~~gdLGpvYG~Qwr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iDQi~~ 160 (323)
T PRK13821 81 DQNANENAQWLANPYRQGVDDLGDVYGVQWRQWPGYKVLDASADAQIADATSRGFRIVARFDEDGAPKVLLYKAIDQLRQ 160 (323)
T ss_pred CCccccccccccccccccCCcccccceeeeeecccccccccccccccccccccccccccccCCCCccccccccChhHHHH
Confidence 998643 469999999999999652 23 35899999
Q ss_pred HHHHHhcCCCCcccEEEccCccccccCCCCCcceEEEEEE--ECCeEEEEEeeecccccccccccHHHHHHHHHHHHHHc
Q psy2405 115 VIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYV--ANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHET 192 (264)
Q Consensus 115 vi~~Lk~~p~sRR~ii~~w~p~d~~~~~~~PC~~~~qf~v--~~gkL~l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~ 192 (264)
||++||+||+|||+|+++|||.++++|++||||.++||+| ++|+|+|++||||+|+++|+|||+++|++|++|||++|
T Consensus 161 vI~~Lk~nP~sRR~I~~~Wnp~dl~~maLpPCh~~~QF~V~~~~g~L~~~lyQRS~D~~LG~PfNiasyalL~~miA~~~ 240 (323)
T PRK13821 161 CLDTIMNNPGSRRILFHGWNPAVLDEIALPACHLLYQFLPNVETREISLCLYIRSNDVGLGTPFNLTEGAALLSLVGRLT 240 (323)
T ss_pred HHHHHhcCCCccceEEEEeChhHhccccCCcceEEEEEEEecCCCeEEEEEEeccccccccccHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998 49999999999999999999999999999999999999
Q ss_pred CCcceEEEEEecccccchhhHHHHHHHhhcCCCCCCeEEeCCCCC-----------CCCCcccCcEEEeCCCCCCCCCcc
Q psy2405 193 GLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPK-----------SSLDYNFEDFQINSYNPQKSIYAP 261 (264)
Q Consensus 193 gl~~G~~~~~~~~~HIY~~~~~~~~~~l~r~p~~~P~l~~~~~~~-----------~~~~~~~~df~l~~Y~~~p~i~~~ 261 (264)
|+++|+|+|+++|+|||+||+++|++||+|+|+++|+|+|+++++ +|+||+++||+|+||+|||+||+|
T Consensus 241 gl~~G~~ih~igdaHIY~nhi~~v~eqL~R~P~~~P~l~i~~~~~~~~~~~~~~~~~i~d~~~dDf~l~~Y~~hp~Ik~~ 320 (323)
T PRK13821 241 GYTPRWFTYFIGDAHIYENQLDMLQEQLTREPYESPRLVISDRVPEYAKTGVYEPEWLEKIEPSDFSLVGYRHHEPLTAP 320 (323)
T ss_pred CCEeeeEEEEEEEEEEeHhHHHHHHHHhcCCCCCCCEEEECCCcccccccccccccchhcCCHhHeEEeCCCCCCCcccc
Confidence 999999999999999999999999999999999999999997644 677999999999999999999999
Q ss_pred ccC
Q psy2405 262 IAI 264 (264)
Q Consensus 262 ~av 264 (264)
|||
T Consensus 321 ~av 323 (323)
T PRK13821 321 MAV 323 (323)
T ss_pred ccC
Confidence 998
No 4
>COG0207 ThyA Thymidylate synthase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.6e-95 Score=646.69 Aligned_cols=264 Identities=61% Similarity=1.126 Sum_probs=259.7
Q ss_pred ChHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCC-CCceeeeeecccccchhhhcccccCCCChHHHhhCCccc
Q psy2405 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQK-GFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKI 79 (264)
Q Consensus 1 ~~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~-~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~i 79 (264)
|++|++++++|+++|..+.||||++|+++||.+++||+++ +||++|||++++|++++|++||++|.+|+.+|+++|+++
T Consensus 3 ~~~yl~l~~~ile~G~~~~drt~~~t~sv~g~q~~~Dl~~~~fpllttk~v~~ks~i~Ellwf~~g~tn~~~l~~~gv~i 82 (268)
T COG0207 3 MKQYLDLIEHILENGTSRSDRTGTGTLSVFGYQMRFDLSKSEFPLLTTKKVHLKSIIHELLWFLRGDTNIAYLKENGVKI 82 (268)
T ss_pred hhHHHHHHHHHHHcCcccccccccceEEEeccEEEEecccCCCceeEeeeeehhhhhHhhhhhhcCCchHHHHHhcCccc
Confidence 7899999999999997788999999999999999999998 799999999999999999999999999999999999999
Q ss_pred cccccccC-CCCCccccccccccccCCCCccchHHHHHHHHhcCCCCcccEEEccCccccccCCCCCcceEEEEEEECCe
Q psy2405 80 WDQWADEN-GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNK 158 (264)
Q Consensus 80 W~~~~~~~-g~~g~~YG~~~r~~~~~~g~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~d~~~~~~~PC~~~~qf~v~~gk 158 (264)
|++|++++ |++|++||+|||+|.+++|.++|||.+||++||+||+|||+++++|||.++++|++||||.++||+|++||
T Consensus 83 Wdew~~e~~Gdlg~vYg~q~r~~~~~~g~~iDQi~~vIe~Lk~np~sRR~ivs~WnP~e~~~m~l~PC~~l~qF~V~~gk 162 (268)
T COG0207 83 WDEWADENYGDLGPVYGYQWRKWLRPDGEKIDQIDKVIEQLKENPDSRRAIVSAWNPGELDEMALPPCHILFQFYVRDGK 162 (268)
T ss_pred cccccccccCcccceeeEeeeeccCcCCCccHHHHHHHHHHhcCCcccceEEEecCccccccccCCCcEEEEEEEEECCE
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEecccccchhhHHHHHHHhhcCCCCCCeEEeCCCCCC
Q psy2405 159 LSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKS 238 (264)
Q Consensus 159 L~l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l~r~p~~~P~l~~~~~~~~ 238 (264)
|+|+++|||+|+++|+|||+++|++|++|||++||+++|+|+|+++|||||+||+|++++||+|+|+++|+|++|++.++
T Consensus 163 L~~~lyqRS~Di~lg~pfNi~syalL~~mvA~~~Gle~G~f~h~~~daHIY~nh~e~~~~ql~R~p~~~pkl~in~~~~~ 242 (268)
T COG0207 163 LSCTLYQRSNDVFLGVPFNIASYALLTHMVAQVTGLEPGEFVHTIGDAHIYDNHFDQAKEQLKREPRPLPKLVINPKDKD 242 (268)
T ss_pred EEEEEEEecccccccccHHHHHHHHHHHHHHHHhCCcceEEEEEeeeeEEEhhhHHHHHHHhccCCCCCCeEEecCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987778
Q ss_pred CCCcccCcEEEeCCCCCCCCCccccC
Q psy2405 239 SLDYNFEDFQINSYNPQKSIYAPIAI 264 (264)
Q Consensus 239 ~~~~~~~df~l~~Y~~~p~i~~~~av 264 (264)
++||++|||+|+||+|||+||+||||
T Consensus 243 ~f~~~~~Df~l~~Y~~~~~ik~~~av 268 (268)
T COG0207 243 LFDFTFEDFELVGYDPHPAIKAPVAV 268 (268)
T ss_pred cccccccceEEECCCCCccccccccC
Confidence 89999999999999999999999998
No 5
>KOG0673|consensus
Probab=100.00 E-value=1.4e-92 Score=614.70 Aligned_cols=263 Identities=51% Similarity=0.946 Sum_probs=257.5
Q ss_pred hHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcccccCCCChHHHhhCCccccc
Q psy2405 2 HQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIWD 81 (264)
Q Consensus 2 ~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~iW~ 81 (264)
.+|++++++|+++|..+.||||++|+|+||.|+||+|++.||+|||||++|+.++.||+||++|++|.+-|.+.|++|||
T Consensus 11 ~~YL~lv~~Ii~~G~~r~DrtgtgTlSvFg~qmrf~Lr~tfPLLTTKrVfwrgV~EElLwfi~G~t~ak~l~~kgv~IWd 90 (293)
T KOG0673|consen 11 FQYLNLVKHIISNGARRMDRTGTGTLSVFGCQMRFSLRDTFPLLTTKRVFWRGVVEELLWFISGSTDAKVLEEKGVHIWD 90 (293)
T ss_pred HHHHHHHHHHHhcCCccCCcCCCceeeeeeeeeeeehhccccchhhhhHHHHHHHHHHHHHHhCCCccchhhhcCceeec
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc------------ccCCCCCccccccccccccC--------CCCccchHHHHHHHHhcCCCCcccEEEccCccccccC
Q psy2405 82 QWA------------DENGDLGPIYGYQWRSWPTL--------QGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKM 141 (264)
Q Consensus 82 ~~~------------~~~g~~g~~YG~~~r~~~~~--------~g~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~d~~~~ 141 (264)
.+. .++|++|++||.|||+|++. .|+++|||..||++||+||++||+|+++|||.|+.+|
T Consensus 91 ~ngsrefLds~G~~~re~GDlgpvyGfqWrHfgA~Y~~~~~dy~gqgvdQL~~vI~~ik~NP~drRIimsAwNP~dl~~m 170 (293)
T KOG0673|consen 91 GNGSREFLDSVGFTAREEGDLGPVYGFQWRHFGARYEDCDSDYTGQGVDQLADVINKIKNNPDDRRIIMSAWNPLDLGKM 170 (293)
T ss_pred CCchHHHHHhcCCCccccCCcccccceeeeecCccccccccccccccHHHHHHHHHHHhcCCccceeeeeccCccccccc
Confidence 985 36899999999999999864 5799999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEEECCeEEEEEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEecccccchhhHHHHHHHhh
Q psy2405 142 KLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLL 221 (264)
Q Consensus 142 ~~~PC~~~~qf~v~~gkL~l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l~ 221 (264)
++||||.+.||+|.+|+|+|.+||||.||-+|+||||++|++|++|||+.||+++|+|+|++|++|||.+|++++++||+
T Consensus 171 alpPCH~~~QFyV~~GelScq~YQrS~dmglGVPFnIASYsLLT~miAhv~gl~pgdfiH~lGdahvy~~Hv~al~~Ql~ 250 (293)
T KOG0673|consen 171 ALPPCHTFCQFYVANGELSCQMYQRSGDMGLGVPFNIASYSLLTCMIAHVCGLKPGDFIHVLGDAHVYKDHVDALQEQLQ 250 (293)
T ss_pred cCCccceeeEEEecCCeeeehhhhhccccccCccchhHHHHHHHHHHHHHhCCCCCceEEecchhhhhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCeEEeCCCCCCCCCcccCcEEEeCCCCCCCCCccccC
Q psy2405 222 RNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264 (264)
Q Consensus 222 r~p~~~P~l~~~~~~~~~~~~~~~df~l~~Y~~~p~i~~~~av 264 (264)
|+|+++|+|.|++++++|++|+.+||+|+||+|||+|+++|||
T Consensus 251 r~PrpFPkl~i~~~~k~id~F~~~df~l~~y~php~I~M~Mav 293 (293)
T KOG0673|consen 251 RPPRPFPKLKINPEVKDIDDFQAEDFELVGYDPHPKIKMKMAV 293 (293)
T ss_pred cCCCCCCceeecccccccccccccceeeeccCCCCCccccccC
Confidence 9999999999999999999999999999999999999999997
No 6
>PTZ00164 bifunctional dihydrofolate reductase-thymidylate synthase; Provisional
Probab=100.00 E-value=2.2e-90 Score=673.00 Aligned_cols=264 Identities=47% Similarity=0.891 Sum_probs=256.4
Q ss_pred ChHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcccccCCCChHHHhhCCcccc
Q psy2405 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIW 80 (264)
Q Consensus 1 ~~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~iW 80 (264)
++||+++|++||++|..+.+|||++|+++||.++||||+++||++||||++||++++||+|||+|++|+++|.+.|++||
T Consensus 231 ~~~Yl~l~~~Il~~G~~~~~rtG~~t~s~fg~~~r~dl~~~fPllTtkk~~~k~~~~EllWfl~g~tn~~~l~~~~~~iW 310 (514)
T PTZ00164 231 EFQYLDLIADIIKNGNVKEDRTGVGTISKFGYQMRFDLRESFPLLTTKKVFLRGIIEELLWFIRGETNGNLLLDKGVRIW 310 (514)
T ss_pred HHHHHHHHHHHHHhCCcCCCCCCCceeeecCceEEEeCCCCCceeeechhhHHHHHHHHHHHHhCCccHHHHHHcCCEec
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc------------ccCCCCCccccccccccccC--------CCCccchHHHHHHHHhcCCCCcccEEEccCcccccc
Q psy2405 81 DQWA------------DENGDLGPIYGYQWRSWPTL--------QGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHK 140 (264)
Q Consensus 81 ~~~~------------~~~g~~g~~YG~~~r~~~~~--------~g~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~d~~~ 140 (264)
|+|. .++|++|++||+|||+|++. +|+++|||++||++||+||+|||+|+++|||.++++
T Consensus 311 d~w~~~~~~~~~~~~~~~~gdlGp~YG~qwr~~~~~~~~~~~~~~g~~~dQl~~vi~~Lk~~p~sRR~i~~~wn~~d~~~ 390 (514)
T PTZ00164 311 EGNGSREFLDSRGLTHREENDLGPVYGFQWRHFGAEYKDMHDDYTGQGVDQLKNIIETIKNNPDDRRLILTAWNPSALDQ 390 (514)
T ss_pred CCCcccchhcccccccccCCCcccchhhhhhccccccccccccccCCcccHHHHHHHHHhcCCcchheEEEEECHhHhcc
Confidence 9996 24699999999999999752 466799999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEEECCeEEEEEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEecccccchhhHHHHHHHh
Q psy2405 141 MKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQL 220 (264)
Q Consensus 141 ~~~~PC~~~~qf~v~~gkL~l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l 220 (264)
++|||||.++||+|++|+|+|+++|||||+++|+|||+++|++||+|||+.||+++|+|+|+++|+|||+||++++++||
T Consensus 391 ~~l~PC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~ya~L~~~iA~~~gl~~G~~~h~~g~~HIY~~h~~~~~~ql 470 (514)
T PTZ00164 391 MALPPCHLLSQFYVNDGKLSCMMYQRSCDMGLGVPFNIASYALLTHMIAQVCGLRPGEFVHFLGDAHVYSNHVDALKEQL 470 (514)
T ss_pred cCCCCCceEEEEEEeCCEEEEEEEEehhhhhhcchhhHHHHHHHHHHHHHHhCCEeeEEEEEeccceeehhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEeCCCCCCCCCcccCcEEEeCCCCCCCCCccccC
Q psy2405 221 LRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264 (264)
Q Consensus 221 ~r~p~~~P~l~~~~~~~~~~~~~~~df~l~~Y~~~p~i~~~~av 264 (264)
+|+|+++|+|+|++++++|+||+++||+|+||+|||+||+||||
T Consensus 471 ~r~p~~~P~l~i~~~~~~~~d~~~~Df~l~~Y~~~p~i~~~~av 514 (514)
T PTZ00164 471 ERVPYPFPTLKLKREVENIEDFTIEDIEVIGYVPHPKIKMEMAV 514 (514)
T ss_pred cCCCCCCCeEEECCCCCccccCChhHEEEeCCCCCCcCCccccC
Confidence 99999999999999999999999999999999999999999998
No 7
>PF00303 Thymidylat_synt: Thymidylate synthase; InterPro: IPR000398 Thymidylate synthase (2.1.1.45 from EC) [, ] catalyzes the reductive methylation of dUMP to dTMP with concomitant conversion of 5,10-methylenetetrahydrofolate to dihydrofolate: 5,10-methylenetetrahydrofolate + dUMP = dihydrofolate + dTMP This provides the sole de novo pathway for production of dTMP and is the only enzyme in folate metabolism in which the 5,10-methylenetetrahydrofolate is oxidised during one-carbon transfer []. The enzyme is essential for regulating the balanced supply of the 4 DNA precursors in normal DNA replication: defects in the enzyme activity affecting the regulation process cause various biological and genetic abnormalities, such as thymineless death []. The enzyme is an important target for certain chemotherapeutic drugs. Thymidylate synthase is an enzyme of about 30 to 35 Kd in most species except in protozoan and plants where it exists as a bifunctional enzyme that includes a dihydrofolate reductase domain []. A cysteine residue is involved in the catalytic mechanism (it covalently binds the 5,6-dihydro-dUMP intermediate). The sequence around the active site of this enzyme is conserved from phages to vertebrates.; GO: 0004799 thymidylate synthase activity, 0006231 dTMP biosynthetic process; PDB: 2AAZ_O 3DL5_D 2OIP_B 3DL6_E 3HJ3_C 1TSN_A 1TDU_B 3B5B_A 1KZJ_E 3B9H_A ....
Probab=100.00 E-value=1.3e-86 Score=603.47 Aligned_cols=264 Identities=48% Similarity=0.853 Sum_probs=235.7
Q ss_pred ChHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcccccCCCChHHHhhCCcccc
Q psy2405 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIW 80 (264)
Q Consensus 1 ~~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~iW 80 (264)
+++|+++|++|+++|+.+.+|||++|+++||+++++|++++||++|+|+++++++++|++|+++||+++++|+++++++|
T Consensus 1 ~~~Y~~l~~~Il~~G~~~~~rtg~~t~~~~~~~~~~d~~~~~p~lt~k~~~~~~~~~EllW~l~Gs~d~~~l~~~~~~iw 80 (269)
T PF00303_consen 1 EKQYLDLLKKILENGEFREDRTGVGTKELFGVQLRIDPRKRFPLLTTKKVNWKSAIAELLWYLSGSNDVDFLREYGPKIW 80 (269)
T ss_dssp HHHHHHHHHHHHHHTEEEESTTSSEEEEEEEEEEEEECGGS-SSSSSST-HHHHHHHHHHHHHTT-SBHHHHHTTT-HTT
T ss_pred ChHHHHHHHHHHHcCCCccCCCCCcEEEECcceEEEcCCCCCccccccccccchhHHHHHHHHHcCccHHHHHhhccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccC---CCCCccccccccccccC--CCCccchHHHHHHHHhcCCCCcccEEEccCccccccCCCCCcceEEEEEEE
Q psy2405 81 DQWADEN---GDLGPIYGYQWRSWPTL--QGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVA 155 (264)
Q Consensus 81 ~~~~~~~---g~~g~~YG~~~r~~~~~--~g~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~d~~~~~~~PC~~~~qf~v~ 155 (264)
+.|++++ |++|++||+|||+|++. .+.++|||++||++||++|+||||++++|||.++.+++++|||..+||+|+
T Consensus 81 d~~~~~~~~~g~~g~~YG~~~r~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~vi~~w~p~~~~~~~~~PC~~~~qf~vr 160 (269)
T PF00303_consen 81 DFWADKDYEEGDLGPAYGPRWRHWGAPYDYGFGFDQLEWVIEKLKNNPDSRRAVISIWNPSDDDEMADPPCHQSIQFYVR 160 (269)
T ss_dssp HGGHSHHHHTTB-SSSHHHHHHHBTSTETTTSSBEHHHHHHHHHHHSTTSSTEEEEC--TTTGGGSSS--SEEEEEEEEE
T ss_pred ccccccccccCcccCCCCceeeeccccccCCccHHHHHHHHHHHhcCCCchhheeeeCCHhHhcCCCCCCceeeeEEEEE
Confidence 9998754 99999999999999753 256899999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEecccccchhhHHHHHHHhhcCCCCCCeEEeCCC
Q psy2405 156 NNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCK 235 (264)
Q Consensus 156 ~gkL~l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l~r~p~~~P~l~~~~~ 235 (264)
+|+|+|+++|||||+++|+|+|+++|++||++||+++|+++|+|+|+++|+|||++|+++|+++|+|+|++.|+++++++
T Consensus 161 ~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~~~~~~~~~l~~~~~~~p~l~~~~~ 240 (269)
T PF00303_consen 161 DGKLNLTVYQRSNDAFLGLPFNIFQYALLQEMIARELGLKPGTYTHFIGSAHIYENHIDAAKEQLKREPYPFPKLEINPE 240 (269)
T ss_dssp TTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEEEEEEEEGGGHHHHHHHHTS---S--EEEESST
T ss_pred CCEEEEEEEeecchhhhhhcccHHHHHHHHHHHHHHhCCcceEEEEEEcccEeeHhHHHHHHHHHhcCCCCCCEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCcEEEeCCCCCCCCCccccC
Q psy2405 236 PKSSLDYNFEDFQINSYNPQKSIYAPIAI 264 (264)
Q Consensus 236 ~~~~~~~~~~df~l~~Y~~~p~i~~~~av 264 (264)
.++|++|+++||+|+||+|||+||+||||
T Consensus 241 ~~~~~~~~~~d~~l~~Y~~~~~i~~~~av 269 (269)
T PF00303_consen 241 KKSIDDFKPEDFKLEGYQPHPKIKFEMAV 269 (269)
T ss_dssp HSSGGGH-GGGEEEES---SS--SSSSTE
T ss_pred CCChhhCchhhEEEeCCCCCCCCCccccC
Confidence 99999999999999999999999999997
No 8
>cd00351 TS_Pyrimidine_HMase Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs that catalyze analogous alkylation of C5 of pyrimidine nucleotides. Both enzymes are involved in the biosynthesis of DNA precursors and are active as homodimers. However, they exhibit distinct pyrimidine base specificities and differ in the details of their catalyzed reactions. TS is biologically ubiquitous and catalyzes the conversion of dUMP and methylene-tetrahydrofolate (CH2THF) to dTMP and dihydrofolate (DHF). It also acts as a regulator of its own expression by binding and inactivating its own RNA. Due to its key role in the de novo pathway for thymidylate synthesis and, hence, DNA synthesis, it is one of the most conserved enzymes across species and phyla. TS is a well-recognized target for anticancer chemotherapy, as well as a valuable new target against infectious diseases. Interestingly, in several protozoa,
Probab=100.00 E-value=2.4e-71 Score=488.77 Aligned_cols=214 Identities=57% Similarity=1.024 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHcCeee-cCCCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcccccCCCChHHHhhCCccccc
Q psy2405 3 QYLNFMRHVYNSGIKK-IDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIWD 81 (264)
Q Consensus 3 ~Y~~~l~~Il~~G~~~-~~rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~iW~ 81 (264)
+|++++++||++|... .+|||++|+++||++++||++++||++|+||++++++++|++|+++|++++++|+++++++|+
T Consensus 1 ~y~~~~~~il~~g~~~~~~Rtg~~t~~~~g~~~~~~~~~~~p~~t~k~~~~~~~i~Ellw~l~G~~~~~~l~~~~~~iw~ 80 (215)
T cd00351 1 QYLDLWRKILEEGYRKTDDRTGTGTRSLFGAQLRFDLSEGFPLLTTKKVPWKSAIEELLWFLRGDTNAERLKEYGVSIWD 80 (215)
T ss_pred CHHHHHHHHHHhCCeecCCCCCCceEEEeeeEEEEECccCccccccCCCCchhhhhhhhhhhcCCccHHHHHHhCccccc
Confidence 5999999999999998 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCccccccccccccCCCCccchHHHHHHHHhcCCCCcccEEEccCccccccCCCCCcceEEEEEEECCeEEE
Q psy2405 82 QWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSC 161 (264)
Q Consensus 82 ~~~~~~g~~g~~YG~~~r~~~~~~g~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~d~~~~~~~PC~~~~qf~v~~gkL~l 161 (264)
+|++++|++|++||+|||+|++. |+++|||++||++||++|+|||+++++|||.++.++++||||..+||+|++|+|+|
T Consensus 81 ~~~~~~g~~g~~YG~r~r~~~~~-~~~~dQi~~vi~~Lk~~p~sRR~ii~~w~p~~~~~~~~~PC~~~~qf~v~~g~L~~ 159 (215)
T cd00351 81 EWASKEGDLGYTYGFQWRHWGAP-GQGVDQIEKVIEKLKNNPDSRRAIISAWNPADLDLMALPPCHTLIQFYVRNGKLSL 159 (215)
T ss_pred cccccCCCCCCChhhheeecCCC-CCChHHHHHHHHHHhcCCCchheEEEecChhhccccCCCCceEEEEEEEeCCEEEE
Confidence 99988899999999999999864 56899999999999999999999999999999988999999999999999999999
Q ss_pred EEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEecccccchhhHHHHH
Q psy2405 162 QLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQAR 217 (264)
Q Consensus 162 ~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~ 217 (264)
+++|||||+++|+|+|+++|++||++||+++|+++|+|+|+++|+|||++|+++|+
T Consensus 160 ~~~~RS~D~~~g~~~N~~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~~~~~~~ 215 (215)
T cd00351 160 TLYQRSNDAFLGVPFNIASYALLTEMIARVTGLEPGEFIHTIGDAHIYENHLEQVK 215 (215)
T ss_pred EEEehhhhhhhhhhhhHHHHHHHHHHHHHhcCCEeEEEEEEEEEEEEehhhHhhhC
Confidence 99999999999999999999999999999999999999999999999999999874
No 9
>PRK00956 thyA thymidylate synthase; Provisional
Probab=100.00 E-value=9.5e-52 Score=362.36 Aligned_cols=196 Identities=23% Similarity=0.328 Sum_probs=167.3
Q ss_pred hHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcccccCCCChHHHhhCCccccc
Q psy2405 2 HQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIWD 81 (264)
Q Consensus 2 ~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~iW~ 81 (264)
++|.+++++|+++|..+++++|..++|+.|..++++. |.. ++++-++...| +.+.+|...+
T Consensus 12 ~a~~~~l~~I~~~G~~~~~~~G~~~~E~~~~~~~i~~----P~~--~~i~~~~~~~~-----------~~~~~y~~~~-- 72 (208)
T PRK00956 12 SAWERLVPKIMNEGEEITDERGSKTKEIMNTIIEITN----PKL--KSIPEKYPLGE-----------EALEEYTKQL-- 72 (208)
T ss_pred HHHHHHHHHHHhCCcEeeCCCCceEEEEeceEEEEcC----Ccc--CCCCCCCCcch-----------HHHHHHHHhc--
Confidence 5899999999999999999999999999999998874 222 12222222222 1222221111
Q ss_pred cccccCCCCCccccccccccccCCCCccchHHHHHHHHhcCCCCcccEEEccCccccccCCCCCcceEEEEEEECCeEEE
Q psy2405 82 QWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSC 161 (264)
Q Consensus 82 ~~~~~~g~~g~~YG~~~r~~~~~~g~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~d~~~~~~~PC~~~~qf~v~~gkL~l 161 (264)
...+.++++++||.|||+|++ ..|||++||++||++|+|||+++++|||.++.+++++|||..+||.|++|+|+|
T Consensus 73 -~~g~~~~~~~~YG~r~r~~~~----~~dQi~~vI~~L~~~p~sRR~i~~~w~p~~d~~~~~~PC~~~~qf~v~~g~L~~ 147 (208)
T PRK00956 73 -LSGSAQGFVYTYGERLREYPG----EVDQIDYIIEKLKENKNSRRATAVTWNPYIDTKVDEVPCLQLVDFLIRDGKLYL 147 (208)
T ss_pred -cCCccCccCCCHHHHHhcCCC----hhHHHHHHHHHHhcCCCchheEEEEeCchhhhhcCCCCCeEEEEEEEeCCEEEE
Confidence 112345699999999999973 359999999999999999999999999998888999999999999999999999
Q ss_pred EEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEecccccchhhHHHHHHHhh
Q psy2405 162 QLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLL 221 (264)
Q Consensus 162 ~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l~ 221 (264)
+++|||||+++|+|+|+++|++||++||+++|+++|+|+|+++|+|||++|+++|+++|+
T Consensus 148 ~~~~RS~D~~~g~p~N~~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~v~~~l~ 207 (208)
T PRK00956 148 TVLFRSNDAGGAFHANAIGLIKLGEYVAEKVGVELGTYTHHSVSAHIYERDWDYLEKIFK 207 (208)
T ss_pred EEEEhhhhhhcccchHHHHHHHHHHHHHHHhCCcceEEEEEEEEEEEeHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999986
No 10
>TIGR03283 thy_syn_methano thymidylate synthase, methanogen type. Thymidylate synthase makes dTMP for DNA synthesis, and is among the most widely distributed of all enzymes. Members of this protein family are encoded within a completed genome sequence if and only if that species is one of the methanogenenic archaea. In these species, tetrahydromethanopterin replaces tetrahydrofolate, The member from Methanobacterium thermoautotrophicum was shown to behave as a thymidylate synthase based on similar side reactions (the exchange of a characteristic proton with water), although the full reaction was not reconstituted. Partial sequence data showed no similarity to known thymidylate synthases simply because the region sequenced was from a distinctive N-terminal region not found in other thymidylate synthases. Members of this protein family appear, therefore, to a novel, tetrahydromethanopterin-dependent thymidylate synthase.
Probab=100.00 E-value=3.1e-50 Score=350.50 Aligned_cols=189 Identities=22% Similarity=0.293 Sum_probs=161.1
Q ss_pred hHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcccccCCCChHHHhhCCccccc
Q psy2405 2 HQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIWD 81 (264)
Q Consensus 2 ~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~iW~ 81 (264)
++|.+++++|+++|..+++++|..++|+.|..++++.. .. ++++-+ ..| + .+.+.+|...+
T Consensus 10 ~a~~~~l~~I~~~G~~~~~~~G~~~~E~~~~~~~i~~P----~~--~~~~~~-----~~~---~---~~~l~~Y~~~l-- 70 (199)
T TIGR03283 10 QAWRELVTKIMVEGEVVEDERGSLTKEVRNLIIHIENP----GP--EKIPEG-----YPL---D---EEKLEEYEKQL-- 70 (199)
T ss_pred HHHHHHHHHHHhCCeEeeCCCCceEEEEeceEEEEcCC----cc--cCcCcc-----Ccc---c---HHHHHHHHHHH--
Confidence 68999999999999999999999999999999988742 22 122211 122 2 23333333333
Q ss_pred cccccCCCCCccccccccccccCCCCccchHHHHHHHHhcCCCCcccEEEccCccccccCCCCCcceEEEEEEECCeEEE
Q psy2405 82 QWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSC 161 (264)
Q Consensus 82 ~~~~~~g~~g~~YG~~~r~~~~~~g~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~d~~~~~~~PC~~~~qf~v~~gkL~l 161 (264)
...++..++++||.|||.|+ ++|||++||++||++|+|||+++++|||.++.+++++|||..+||.|++|+|+|
T Consensus 71 -l~~~~~~~~y~YG~r~r~~~-----g~dQl~~vI~~Lk~~p~sRR~i~~~w~p~~d~~~~~~PC~~~~qf~vr~g~L~~ 144 (199)
T TIGR03283 71 -LDPERQGFVYTYGNRLRRYF-----GIDQIDYIIERLNQSPNSRRAIAITWDPPQDIKVDEVPCLQLVQFLIRDNKLYL 144 (199)
T ss_pred -cCCCcCCCCcCHHHHHHcCC-----ChhHHHHHHHHHhcCCCccceeEEEECcchhcccCCCCCcEEEEEEEeCCEEEE
Confidence 11233458999999999996 699999999999999999999999999998878999999999999999999999
Q ss_pred EEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEecccccchhhHHH
Q psy2405 162 QLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQ 215 (264)
Q Consensus 162 ~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~ 215 (264)
+++|||||+++|+|+|+++|++||++||+++|+++|+|+|+++|+|||++|++.
T Consensus 145 ~~~~RS~D~~~g~p~N~~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIYe~d~~~ 198 (199)
T TIGR03283 145 TAFFRSNDVGGAWVANAIGLRRLQEYVAEKVGVEPGTLTTHAISAHIYERDFDE 198 (199)
T ss_pred EEEEhhhhhhchhhhHHHHHHHHHHHHHHHhCCcceEEEEEEEEEEEecccccc
Confidence 999999999999999999999999999999999999999999999999999874
No 11
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=21.80 E-value=1.5e+02 Score=20.07 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=30.7
Q ss_pred HHHHcCCcceEEEEEecccccchhhHHHHHHHhhcCC
Q psy2405 188 IAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNP 224 (264)
Q Consensus 188 iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l~r~p 224 (264)
-|...|+++|..+..++...+.....+.+.++|+..+
T Consensus 25 ~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~ 61 (70)
T cd00136 25 PAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEV 61 (70)
T ss_pred HHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCC
Confidence 3455899999999999999998877788888888765
Done!