Query psy2405
Match_columns 264
No_of_seqs 145 out of 1163
Neff 6.5
Searched_HMMs 29240
Date Sat Aug 17 00:09:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2405.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2405hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qj7_A TS, tsase, thymidylate 100.0 6E-104 2E-108 707.9 22.8 263 1-264 2-264 (264)
2 3ed7_A Tsase, TS, thymidylate 100.0 4E-103 1E-107 710.7 22.4 264 1-264 12-295 (295)
3 4dq1_A TS, tsase, thymidylate 100.0 1E-102 4E-107 713.2 20.8 263 1-264 9-321 (321)
4 2g8o_A TS, tsase, thymidylate 100.0 7E-102 2E-106 697.4 24.3 264 1-264 1-264 (264)
5 3uwl_A TS, tsase, thymidylate 100.0 1E-101 4E-106 711.2 21.9 264 1-264 2-315 (315)
6 3kgb_A Thymidylate synthase 1/ 100.0 3E-101 1E-105 699.2 20.2 264 1-264 9-294 (294)
7 3v8h_A TS, tsase, thymidylate 100.0 7E-101 2E-105 704.9 19.2 264 1-264 5-327 (327)
8 1j3k_C Bifunctional dihydrofol 100.0 5E-100 2E-104 699.3 24.9 264 1-264 45-328 (328)
9 3ix6_A TS, tsase, thymidylate 100.0 3E-100 9E-105 711.3 21.8 264 1-264 97-360 (360)
10 1f28_A Thymidylate synthase; b 100.0 5E-100 2E-104 693.9 22.4 264 1-264 6-297 (297)
11 1hw4_A TS, thymidylate synthas 100.0 1.5E-99 5E-104 700.0 24.1 264 1-264 72-355 (355)
12 2aaz_A TS, tsase, thymidylate 100.0 2.7E-99 9E-104 693.0 23.1 264 1-264 20-317 (317)
13 1bkp_A Thymidylate synthase A; 100.0 6.9E-99 2E-103 681.2 23.5 263 1-264 4-278 (278)
14 1tis_A Thymidylate synthase; t 100.0 1E-99 3E-104 688.0 14.4 259 1-264 1-286 (286)
15 3nrr_A Dihydrofolate reductase 100.0 1.4E-95 5E-100 707.5 24.4 264 1-264 232-515 (515)
16 3hj3_A Chain A, crystal struct 100.0 3.7E-95 1.3E-99 705.5 23.9 264 1-264 237-521 (521)
17 3irm_A Bifunctional dihydrofol 100.0 3.8E-95 1.3E-99 705.3 23.5 264 1-264 237-521 (521)
18 3qg2_A Bifunctional dihydrofol 100.0 4E-94 1.4E-98 704.3 25.2 264 1-264 325-608 (608)
19 1b5e_A Protein (deoxycytidylat 100.0 2E-74 6.9E-79 515.2 14.6 217 1-228 9-237 (246)
20 1g9o_A NHE-RF; PDZ domain, com 37.8 33 0.0011 23.9 3.8 45 188-232 39-83 (91)
21 3r68_A Na(+)/H(+) exchange reg 35.7 30 0.001 24.2 3.3 38 188-225 41-78 (95)
22 3sfj_A TAX1-binding protein 3; 25.7 53 0.0018 23.3 3.2 37 188-224 57-93 (104)
23 2pa1_A PDZ and LIM domain prot 21.5 89 0.003 21.3 3.6 36 189-224 39-74 (87)
24 3qik_A Phosphatidylinositol 3, 20.4 44 0.0015 25.0 1.8 35 188-222 51-85 (101)
No 1
>3qj7_A TS, tsase, thymidylate synthase; thymidilate synthase, structural genomics, TB structural GEN consortium, TBSGC, transferase; HET: UMP SPM; 2.50A {Mycobacterium tuberculosis} SCOP: d.117.1.1
Probab=100.00 E-value=6e-104 Score=707.93 Aligned_cols=263 Identities=57% Similarity=1.127 Sum_probs=258.2
Q ss_pred ChHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcccccCCCChHHHhhCCcccc
Q psy2405 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIW 80 (264)
Q Consensus 1 ~~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~iW 80 (264)
|+||+++|++|+++|+.++||||++|+|+||.++||||++|||++||||+++|++++||+||++|++|+++|+++|++||
T Consensus 2 m~~Yl~l~~~Il~~G~~~~dRTg~gT~s~fg~~~rfdL~~~fPllTtkk~~~ks~i~ELLWfl~G~tn~~~L~~~gv~iW 81 (264)
T 3qj7_A 2 MTPYEDLLRFVLETGTPKSDRTGTGTRSLFGQQMRYDLSAGFPLLTTKKVHFKSVAYELLWFLRGDSNIGWLHEHGVTIW 81 (264)
T ss_dssp CCHHHHHHHHHHHHCEEECCTTSCCEEEEESCEEEEEGGGCCCCCTTTTCCHHHHHHHHHHHHHTCCBSHHHHTTTCCTT
T ss_pred hHHHHHHHHHHHHcCcCCCCCCCCceEEEecceEEEecCCCCceeecccccHHHHHHHHHHHHcCCCcHHHHHHhCCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCccccccccccccCCCCccchHHHHHHHHhcCCCCcccEEEccCccccccCCCCCcceEEEEEEECCeEE
Q psy2405 81 DQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLS 160 (264)
Q Consensus 81 ~~~~~~~g~~g~~YG~~~r~~~~~~g~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~d~~~~~~~PC~~~~qf~v~~gkL~ 160 (264)
|+|++++|++|++||+|||+|++++|+++|||++||++||+||+|||+++++|||+++++|++||||.++||+|++|+|+
T Consensus 82 d~wa~e~GdlG~vYG~qwr~~~~~~g~~~DQi~~vI~~Lk~nP~SRR~ivs~Wnp~dl~~malpPCh~~~qF~V~~gkL~ 161 (264)
T 3qj7_A 82 DEWASDTGELGPIYGVQWRSWPAPSGEHIDQISAALDLLRTDPDSRRIIVSAWNVGEIERMALPPCHAFFQFYVADGRLS 161 (264)
T ss_dssp GGGCCTTSBCCSCHHHHHHHEECTTSCEECHHHHHHHHHHHCTTCSCCEEECCCGGGGGGSSSCCSEEEEEEEEETTEEE
T ss_pred hhhcccCCCCccccchhheecCCCCcccHHHHHHHHHHHhcCCCCceEEEEccChhHhccCCCCCceEEEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEecccccchhhHHHHHHHhhcCCCCCCeEEeCCCCCCCC
Q psy2405 161 CQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 240 (264)
Q Consensus 161 l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l~r~p~~~P~l~~~~~~~~~~ 240 (264)
|++||||+|+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||+|++++||+|+|+++|+|+| +++++|+
T Consensus 162 ~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~e~~~~qL~R~p~~~P~l~i-~~~~~~~ 240 (264)
T 3qj7_A 162 CQLYQRSADLFLGVPFNIASYALLTHMMAAQAGLSVGEFIWTGGDCHIYDNHVEQVRLQLSREPRPYPKLLL-ADRDSIF 240 (264)
T ss_dssp EEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCCCCCEEEE-ECCSSGG
T ss_pred EEEEhhhhhHHHHhhccHHHHHHHHHHHHHhcCCeeeEEEEEEEEEEEEHHHHHHHHHHhcCCCCCCCEEEe-CCCCChh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred CcccCcEEEeCCCCCCCCCccccC
Q psy2405 241 DYNFEDFQINSYNPQKSIYAPIAI 264 (264)
Q Consensus 241 ~~~~~df~l~~Y~~~p~i~~~~av 264 (264)
||+++||+|+||+|||+||+||||
T Consensus 241 d~~~~Df~l~~Y~~hp~ik~~~av 264 (264)
T 3qj7_A 241 EYTYEDIVVKNYDPHPAIKAPVAV 264 (264)
T ss_dssp GCCGGGEEEESCCCCCCCCCC---
T ss_pred cCCHhHEEEECCcCCCccCccccC
Confidence 999999999999999999999998
No 2
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=100.00 E-value=4.3e-103 Score=710.69 Aligned_cols=264 Identities=53% Similarity=0.937 Sum_probs=250.5
Q ss_pred ChHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcccccCCCChHHHhhCCcccc
Q psy2405 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIW 80 (264)
Q Consensus 1 ~~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~iW 80 (264)
|+||+++|++||++|+.+.||||++|+|+||.++||||+++||++||||++||++++||+||++|+||+++|+++|++||
T Consensus 12 ~~qYldl~~~Il~~G~~~~dRTGtgT~svfg~q~rfdL~~~fPllTtKkv~~k~ii~ELLWfl~G~tn~~~L~~~gv~IW 91 (295)
T 3ed7_A 12 ELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKGVKIW 91 (295)
T ss_dssp HHHHHHHHHHHHHHCEEEECTTSCEEEEEEEEEEEEECSSCCCCCTTTTCCHHHHHHHHHHHHTTCCBGGGGCC-----C
T ss_pred HHHHHHHHHHHHHcCcCCCCCCCCceEEEcCceEEEecccCcceeecccccHHHHHHHHHHHHhCCccHHHHHHcCCccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc------------ccCCCCCccccccccccccC--------CCCccchHHHHHHHHhcCCCCcccEEEccCcccccc
Q psy2405 81 DQWA------------DENGDLGPIYGYQWRSWPTL--------QGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHK 140 (264)
Q Consensus 81 ~~~~------------~~~g~~g~~YG~~~r~~~~~--------~g~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~d~~~ 140 (264)
|+|+ +++|++|++||+|||+|+++ +|+++|||++||++||+||+|||+|+++|||.++++
T Consensus 92 d~~~~~~~~~~~g~~~~e~GdlGpvYG~QwR~~~~~y~~~~~~y~g~~iDQi~~vI~~Lk~nP~sRR~ivsaWnp~dl~~ 171 (295)
T 3ed7_A 92 DANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPL 171 (295)
T ss_dssp CSCSSCCGGGGSCHHHHHTTBCCSCTHHHHHHBTCCCCCSSSCCTTCSBCHHHHHHHHHHHCTTCSCCEEEECCGGGTTT
T ss_pred ccchhhhhhhcccCCccCCCcCccchhhhhhccCCccccccccCCccchhHHHHHHHHHhcCCCCceeEEEecCHhHhhc
Confidence 9985 56899999999999999865 788999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEEECCeEEEEEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEecccccchhhHHHHHHHh
Q psy2405 141 MKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQL 220 (264)
Q Consensus 141 ~~~~PC~~~~qf~v~~gkL~l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l 220 (264)
|+|||||.++||+|++|+|+|++||||+|+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||+|++++||
T Consensus 172 maLpPCh~~~qF~V~~gkLs~~lyqRS~D~~lG~PfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nH~e~~~~qL 251 (295)
T 3ed7_A 172 MALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQL 251 (295)
T ss_dssp SSSCCCSEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHT
T ss_pred CCCCCceEEEEEEEeCCEEEEEEEeehhhhHHhhhhhHHHHHHHHHHHHHHhCCeeeEEEEEEEEEEecHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEeCCCCCCCCCcccCcEEEeCCCCCCCCCccccC
Q psy2405 221 LRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264 (264)
Q Consensus 221 ~r~p~~~P~l~~~~~~~~~~~~~~~df~l~~Y~~~p~i~~~~av 264 (264)
+|+|+++|+|+|++++++|+||++|||+|+||+|||+||+||||
T Consensus 252 ~R~p~~~P~l~i~~~~~~i~df~~~Df~l~~Y~~hp~Ik~~~aV 295 (295)
T 3ed7_A 252 QREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 295 (295)
T ss_dssp TSCCCCCCEEEECSCCCSGGGCCGGGEEEESCCCCCCCCC----
T ss_pred cCCCCCCCEEEECCCCCChhcCCHhHEEEECCcCCCccCccccC
Confidence 99999999999999999999999999999999999999999998
No 3
>4dq1_A TS, tsase, thymidylate synthase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: UMP; 2.71A {Staphylococcus aureus}
Probab=100.00 E-value=1.3e-102 Score=713.16 Aligned_cols=263 Identities=54% Similarity=0.951 Sum_probs=255.6
Q ss_pred ChHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcccccCCCChHHHhhCCcccc
Q psy2405 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIW 80 (264)
Q Consensus 1 ~~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~iW 80 (264)
|+||+++|++||++|..++||||++|+|+||.++||||++|||++||||++||+++.||+|||+|+||+++|+++|++||
T Consensus 9 ~~qYldl~~~Il~~G~~~~dRTgtgT~s~fg~q~rfdL~~gfPllTTKkv~~k~ii~ELLWfl~G~tNi~~L~~~gv~IW 88 (321)
T 4dq1_A 9 DAAYHSLCEEVLEIGNTRNDRTNTGTISKFGHQLRFDLSKGFPLLTTKKVSFKLVATELLWFIKGDTNIQYLLKYNNNIW 88 (321)
T ss_dssp HHHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEEGGGCCCCCSSSCCCHHHHHHHHHHHHHTCCBHHHHHTTTCCTT
T ss_pred HHHHHHHHHHHHHcCcCCCCCCCCCeEEEeeeeEEecCCCCCceeeeecccHHHHHHHHHHHHhCCCcHHHHHHcCCccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc--------------------------------------------------ccCCCCCccccccccccccCCCCccc
Q psy2405 81 DQWA--------------------------------------------------DENGDLGPIYGYQWRSWPTLQGKYID 110 (264)
Q Consensus 81 ~~~~--------------------------------------------------~~~g~~g~~YG~~~r~~~~~~g~~~d 110 (264)
|+|+ +++|++|++||+|||+|++++|+++|
T Consensus 89 d~wa~~~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~f~~~il~d~~f~~~~GdLGpvYG~QwR~~~~~~g~~iD 168 (321)
T 4dq1_A 89 NEWAFENYIKSDEYNGPDMTDFGHRALSDPEFNEQYKEQMKQFKQRILEDDTFAKQFGDLGNVYGKQWRDWVDKDGNHFD 168 (321)
T ss_dssp HHHHHHHHTTSTTCCSSCCTTCSHHHHHCTTHHHHHHHHHHHHHHHHHHCHHHHHHHSBCCCCHHHHHHCEECTTCCEEC
T ss_pred CccchhhhhccccccCccccccccccccchhHHHHHHHHHHHhhhhhcccccccccCCcCccchhhHheeCcCCCCCchh
Confidence 9998 45799999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCcccEEEccCccccccCCCCCcceEEEEEEECCeEEEEEeeecccccccccccHHHHHHHHHHHHH
Q psy2405 111 QLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAH 190 (264)
Q Consensus 111 Ql~~vi~~Lk~~p~sRR~ii~~w~p~d~~~~~~~PC~~~~qf~v~~gkL~l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~ 190 (264)
||++||++||+||+|||+++++|||.++++|++||||.++||+|++|+|+|++||||+|+++|+|||+++|++|++|||+
T Consensus 169 Qi~~vI~~Lk~nP~SRR~ivsaWnp~dl~~maLpPCh~~~qF~V~~gkLs~~lyqRS~D~~lG~PfNiasyalL~~miAq 248 (321)
T 4dq1_A 169 QLKTVIEQIKHNPDSRRHIVSAWNPTEIDTMALPPCHTMFQFYVQDGKLSCQLYQRSADIFLGVPFNIASYALLTHLIAK 248 (321)
T ss_dssp HHHHHHHHHHHCTTCSCCEEECCCGGGTTTSSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCceeEEEecChHHhccCCCCCCceEEEEEEECCEEEEEEEchhhhHHHHhhccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcceEEEEEecccccchhhHHHHHHHhhcCCCCCCeEEeCCCCCCCCCcccCcEEEeCCCCCCCCCccccC
Q psy2405 191 ETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264 (264)
Q Consensus 191 ~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l~r~p~~~P~l~~~~~~~~~~~~~~~df~l~~Y~~~p~i~~~~av 264 (264)
+||+++|+|+|+++|+|||+||+|++++||+|+|+++|+|+|+++ ++|+||+++||+|+||+|||+||+||||
T Consensus 249 ~~Gl~~G~fih~~gdaHIY~nH~e~~~~qL~R~p~~~P~l~in~~-~~i~df~~eDf~l~~Y~~hp~Ik~~vAV 321 (321)
T 4dq1_A 249 ECGLEVGEFVHTFGDAHIYSNHIDAIQTQLARESFNPPTLKINSD-KSIFDINYEDLEIVDYESHPAIKAPIAV 321 (321)
T ss_dssp HTTCEEEEEEEEEEEEEEETTSHHHHHHHHHSCCCCCCEEEECCC-SCGGGCCGGGEEEESCCCCCCCCC----
T ss_pred HhCCcceEEEEEEEEEEEeHHHHHHHHHHhCCCCCCCCEEEECCC-CCcccCCHhHEEEeCCcCCCccCccccC
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999998
No 4
>2g8o_A TS, tsase, thymidylate synthase; methyltransferase, DUMP, antifolate, high-resolution, ternar complex, beta sheet, alpha/beta protein; HET: CXM UMP CB3; 1.30A {Escherichia coli} SCOP: d.117.1.1 PDB: 1aob_A* 1f4c_A* 1f4e_A* 1f4f_A* 1jtq_A* 1jtu_A* 1jut_A* 1kce_A* 1kzi_A* 1tls_A* 1tsn_A* 1f4b_A* 2bbq_A* 2ftq_A* 2a9w_A* 2kce_A* 3b9h_A* 3bhl_A* 3bhr_A* 3tms_A ...
Probab=100.00 E-value=6.5e-102 Score=697.44 Aligned_cols=264 Identities=64% Similarity=1.184 Sum_probs=261.6
Q ss_pred ChHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcccccCCCChHHHhhCCcccc
Q psy2405 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIW 80 (264)
Q Consensus 1 ~~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~iW 80 (264)
|+||+++|++|+++|+.++||||++|+|+||.++|||++++||++|+||+++|++++||+||++|++|+++|+++|++||
T Consensus 1 ~~~Yl~l~~~Il~~G~~~~drtG~~T~s~fg~~~r~dl~~~fPllTtkk~~~ks~i~ELlWfl~G~tn~~~l~~~gv~iW 80 (264)
T 2g8o_A 1 MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTIW 80 (264)
T ss_dssp CHHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEEGGGCCCCCCSSCCCHHHHHHHHHHHHHTCCBTHHHHHTTCCTT
T ss_pred CHHHHHHHHHHHHcCcCccCCCCCeEEEEeeeEEEeecCCCCceeeccccchhhhHHHHHHHHcCCCcHHHHHHcCCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCccccccccccccCCCCccchHHHHHHHHhcCCCCcccEEEccCccccccCCCCCcceEEEEEEECCeEE
Q psy2405 81 DQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLS 160 (264)
Q Consensus 81 ~~~~~~~g~~g~~YG~~~r~~~~~~g~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~d~~~~~~~PC~~~~qf~v~~gkL~ 160 (264)
|+|++++|++|++||+|||+|++++|+++|||++||++||+||+|||+++++|||.++++|++||||.++||+|++|||+
T Consensus 81 d~~~~~~G~lG~vYG~qwr~~~~~~g~~iDQi~~vI~~Lk~nP~sRR~i~s~wnp~dl~~m~l~PC~~~~qF~V~~gkL~ 160 (264)
T 2g8o_A 81 DEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS 160 (264)
T ss_dssp GGGCCTTSBCCSCHHHHHHHEEETTTEEECHHHHHHHHHHHCTTCSCCEEECCCGGGGGGSSSCCSEEEEEEEEETTEEE
T ss_pred hhccCCCCCcccchhHHHhhccCCCCCchHHHHHHHHHHhcCCCCceEEEEecChhHhhcCCCCCcceEEEEEEECCEEE
Confidence 99999999999999999999998888889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEecccccchhhHHHHHHHhhcCCCCCCeEEeCCCCCCCC
Q psy2405 161 CQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 240 (264)
Q Consensus 161 l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l~r~p~~~P~l~~~~~~~~~~ 240 (264)
|+++|||+|+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||+++|++||+|+|+++|+|+|++++++|+
T Consensus 161 ~~lyqRS~D~~lG~pfNi~syalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~~~v~~qL~r~p~~~P~l~i~~~~~~~~ 240 (264)
T 2g8o_A 161 CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIF 240 (264)
T ss_dssp EEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCCCCCEEEECCCCSSTT
T ss_pred EEEEhhhhHHHHhhcchHHHHHHHHHHHHHHHCCeeeEEEEEEeeeEeccchHHHHHHHhccCCCCCCeeecCCCCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCcEEEeCCCCCCCCCccccC
Q psy2405 241 DYNFEDFQINSYNPQKSIYAPIAI 264 (264)
Q Consensus 241 ~~~~~df~l~~Y~~~p~i~~~~av 264 (264)
||++|||+|+||+|||+||+||||
T Consensus 241 d~~~~df~l~~Y~~hp~ik~~~av 264 (264)
T 2g8o_A 241 DYRFEDFEIEGYDPHPGIKAPVAI 264 (264)
T ss_dssp CCCGGGEEEESCCCCCCCCCCCCC
T ss_pred cCChhHEEEeCCCCCCCCcccccC
Confidence 999999999999999999999998
No 5
>3uwl_A TS, tsase, thymidylate synthase; methyltransferase, transferase; HET: CME FOZ; 2.07A {Enterococcus faecalis} PDB: 3ik0_A* 1lcb_A* 1lce_A* 1lca_A* 1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A* 3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A* 1tsz_A 2g86_A* ...
Probab=100.00 E-value=1.1e-101 Score=711.25 Aligned_cols=264 Identities=57% Similarity=1.021 Sum_probs=257.1
Q ss_pred ChHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcccccCCCChHHHhhCCcccc
Q psy2405 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIW 80 (264)
Q Consensus 1 ~~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~iW 80 (264)
++||+++|++||++|..+.||||++|+|+||.++||||++|||++||||++||+++.||+|||+|+||+++|++.|++||
T Consensus 2 e~qYldLl~~IL~~G~~k~dRTGtgT~SvFG~q~rfdL~~gFPlLTTKkv~~Ksii~ELLWFl~G~Tn~~~L~e~gv~IW 81 (315)
T 3uwl_A 2 EEAYLALGKKILEEGHFKEDRTGTGTYSLFGYQMRFDLAKGFPLLTTKRVPFGLIKSELLWFLKGDTNIRYLLERNNHIW 81 (315)
T ss_dssp HHHHHHHHHHHHHHCEEEECTTSCEEEEEEEEEEEEEGGGCCCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHHTTCCTT
T ss_pred hHHHHHHHHHHHHcCCCcCCCCCCceEEEeeeeEEEeccCCCceeeeccchHHHHHHHHHHHHcCCccHHHHHHcCCCcc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccC--------------------------------------------------CCCCccccccccccccCCCCccc
Q psy2405 81 DQWADEN--------------------------------------------------GDLGPIYGYQWRSWPTLQGKYID 110 (264)
Q Consensus 81 ~~~~~~~--------------------------------------------------g~~g~~YG~~~r~~~~~~g~~~d 110 (264)
|+|++++ |++|++||.|||+|.+++|+++|
T Consensus 82 d~wa~~~~l~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~f~~~i~~d~~~~~~~GdlGpvYG~QwR~~~~~~g~~iD 161 (315)
T 3uwl_A 82 DEWAFERYVKSADYQGPDMTDFGHRVLQDPAFAEQYKEEHQKFCDAILNDAEFAEKYGELGNIYGAQWRHWETKDGSFID 161 (315)
T ss_dssp CHHHHHHHHHSSSCCC---------------------CHHHHHHHHHHHCHHHHHHHSBCCSSHHHHHHCEECTTSCEEC
T ss_pred cccchhhhhhcccccCcccccccceeeccchhhhhhhhHHHHhhhhhccccccccccCcccccCccccccccCCCCCcch
Confidence 9997321 89999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCcccEEEccCccccccCCCCCcceEEEEEEECCeEEEEEeeecccccccccccHHHHHHHHHHHHH
Q psy2405 111 QLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAH 190 (264)
Q Consensus 111 Ql~~vi~~Lk~~p~sRR~ii~~w~p~d~~~~~~~PC~~~~qf~v~~gkL~l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~ 190 (264)
||++||++||+||+|||+++++|||.++++|++||||.++||+|++|+|+|+++|||+|+++|+|||+++|++|++|||+
T Consensus 162 Qi~~vi~~Lk~nP~sRR~i~s~Wnp~~~~~~~lpPCh~~~qf~v~~~~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~ 241 (315)
T 3uwl_A 162 QLANVIEMIKTNPDSRRLIVSAWNPEDVPSMALPPCHTMFQFYVNEGKLSCQLYQRSADVFLGVPFNIASYALLTHLIAH 241 (315)
T ss_dssp HHHHHHHHHHHCTTCSCCEEECCCTTTGGGCSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCeEEEEecCHHHHhcCCccccceEEEEEECCCeEEEEEEeehhhhhhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcceEEEEEecccccchhhHHHHHHHhhcCCCCCCeEEeCCCCCCCCCcccCcEEEeCCCCCCCCCccccC
Q psy2405 191 ETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264 (264)
Q Consensus 191 ~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l~r~p~~~P~l~~~~~~~~~~~~~~~df~l~~Y~~~p~i~~~~av 264 (264)
+||+++|+|+|+++|+|||+||+|+|++||+|+|+++|+|+|++++++|+||+++||+|+||+|||+||+||||
T Consensus 242 ~~gl~~G~~~h~~gd~HIY~nh~e~~~~ql~R~p~~~P~L~in~~~~~i~d~~~~Df~l~~Y~~hp~Ik~~~AV 315 (315)
T 3uwl_A 242 ETGLEVGEFVHTLGDAHLYQNHVEQMQEQLSREVRSFPTLVLNPDKASVFDFDMEDIKVEGYDPHPTIKAPIAV 315 (315)
T ss_dssp HTTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCCCCCEEEECTTCCCGGGCCGGGEEEESCCCCCCCCCCC--
T ss_pred HhCCccceEEEEeeeeEeeHhHHHHHHHHhCCCCCCCCeEEECCCCCccccCCHHHEEEeCCCCCCCCCcCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998
No 6
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=100.00 E-value=2.8e-101 Score=699.23 Aligned_cols=264 Identities=47% Similarity=0.930 Sum_probs=237.2
Q ss_pred ChHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCC-CCceeeeeecccccchhhhcccccCCCChHHHhhCCccc
Q psy2405 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQK-GFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKI 79 (264)
Q Consensus 1 ~~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~-~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~i 79 (264)
|+||+++|++||++|+.++||||++|+|+||.++||||++ +||++||||++||+++.||+||++|+||+++|+++|++|
T Consensus 9 ~~qYldl~~~Il~~G~~~~dRTGtgT~s~fg~q~rfdL~~~~fPllTtKkv~~k~ii~ELLWfl~G~tn~~~L~~~gv~I 88 (294)
T 3kgb_A 9 EHQYLDLVKHILENGARRMDRTGTGTLSVFGATMRFSLEDNTFPLLTTRRVFYRGVVEELLFFLRGETDSKVLEKKGVRI 88 (294)
T ss_dssp HHHHHHHHHHHHHHCEEEC----CCEEEEEEEEEEEECGGGBCCCCSSSCCCHHHHHHHHHHHHTTCCCTHHHHTTTCC-
T ss_pred HHHHHHHHHHHHHhCcCcCCCCCCceEEeccceEEEecccCccceeeeccccHHHHHHHHHHHHhCCccHHHHHhcCCCc
Confidence 6899999999999999999999999999999999999999 799999999999999999999999999999999999999
Q ss_pred ccccc-----------ccCCCCCccccccccccccC--------CCCccchHHHHHHHHhcCCCCcccEEEccCcccccc
Q psy2405 80 WDQWA-----------DENGDLGPIYGYQWRSWPTL--------QGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHK 140 (264)
Q Consensus 80 W~~~~-----------~~~g~~g~~YG~~~r~~~~~--------~g~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~d~~~ 140 (264)
||+|+ +++|++|++||+|||+|+++ +|+++|||++||++||+||+|||+|+++|||.++++
T Consensus 89 Wd~~~~~~~~~~~~~~~e~GdlGpvYG~QwR~~~~~y~~~~~~~~g~~iDQi~~vI~~Lk~nP~sRR~ivsaWnp~dl~~ 168 (294)
T 3kgb_A 89 WEKNGAKQFLQSVGIDREEGDLGPIYGFQWRHFGARYETSASSYEGKGVDQIASAIAAIRANPASRRIVVSAWNPTDLGS 168 (294)
T ss_dssp --------------------CCCSCHHHHHHSBTCCCCCTTSCCTTSSBCHHHHHHHHHHHCTTCSCCEEECCCTTCHHH
T ss_pred cccchhhhhhhcccccccCCCCccccchhhhcCCCccccccccccccchhHHHHHHHHHhcCCCccceEEEecChhHhcC
Confidence 99984 67899999999999999863 688999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEEECCeEEEEEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEecccccchhhHHHHHHHh
Q psy2405 141 MKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQL 220 (264)
Q Consensus 141 ~~~~PC~~~~qf~v~~gkL~l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l 220 (264)
|++||||.++||+|++|+|+|++||||+|+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||+|++++||
T Consensus 169 maLpPCh~~~qF~V~~gkLs~~lyqRS~D~~lG~PfNiasyalL~~miA~~~gl~~G~f~h~~gdaHIY~nH~e~~~~qL 248 (294)
T 3kgb_A 169 MALPPCHVLFQFNVTDGKLSCAMYQRSGDMGLGVPFNIASYSLLTILVAHLTGLQPGEFVHFLGDAHVYLDHVDSLRQQI 248 (294)
T ss_dssp HHSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHT
T ss_pred CCCCCCCceEEEEEECCEEEEEEEehhhhhhHHhhccHHHHHHHHHHHHHHhCCeeEEEEEEEEeEEecHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEeCCC--CCCCCCcccCcEEEeCCCCCCCCCccccC
Q psy2405 221 LRNPGSLPNLTILCK--PKSSLDYNFEDFQINSYNPQKSIYAPIAI 264 (264)
Q Consensus 221 ~r~p~~~P~l~~~~~--~~~~~~~~~~df~l~~Y~~~p~i~~~~av 264 (264)
+|+|+++|+|+|+++ +++|+||+++||+|+||+|||+||+|||.
T Consensus 249 ~R~p~~~P~l~i~~~~~~~~i~df~~~Df~l~~Y~~hp~Ik~~~a~ 294 (294)
T 3kgb_A 249 QRPPRAFPKLFVSPKGPRTEPEHFQYEDFELVGYDPHPAIKMNMSA 294 (294)
T ss_dssp TSCCCCCCEEEECCSSCCCSGGGCCGGGEEEESCCCC---------
T ss_pred cCCCCCCCEEEECCcCCCCchhcCCHhHEEEeCCcCCCcCCCCCCC
Confidence 999999999999998 99999999999999999999999999983
No 7
>3v8h_A TS, tsase, thymidylate synthase; ssgcid, structural genomics, seattle S genomics center for infectious disease, transferase; HET: CIT; 1.65A {Burkholderia thailandensis}
Probab=100.00 E-value=6.6e-101 Score=704.89 Aligned_cols=264 Identities=39% Similarity=0.675 Sum_probs=248.1
Q ss_pred ChHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcccccCCCChHHHhhCCcccc
Q psy2405 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIW 80 (264)
Q Consensus 1 ~~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~iW 80 (264)
|+||+++|++||++|+.++||||++|+|+||.++||||++|||++||||++||+++.||+|||+|++|+++|+++|++||
T Consensus 5 m~qYldl~~~Il~~G~~~~dRTGtgT~s~fg~q~rfdL~~gFPllTTKkv~~ksii~ELLWfl~G~tn~~~L~e~gv~IW 84 (327)
T 3v8h_A 5 MKQYLDLVRTILDTGTWQSNRTGIRTIGIPGAMLRFDLQQGFPAVTTKKLAFKSAIGELVGFLRATRSAAEFRALGCKVW 84 (327)
T ss_dssp CHHHHHHHHHHHHHCEEECC--CCCEEEEEEEEEEEEGGGCCCCCCSSCCCHHHHHHHHHHHHTTCCBHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHHcCCccCCCCCCceEEecCceEEEecccCCcccccccccHHHHHHHHHHHHhCCccHHHHHHcCCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc------------ccCCCCCccccccccccc--------------------------cCCCC--------ccchHHH
Q psy2405 81 DQWA------------DENGDLGPIYGYQWRSWP--------------------------TLQGK--------YIDQLSG 114 (264)
Q Consensus 81 ~~~~------------~~~g~~g~~YG~~~r~~~--------------------------~~~g~--------~~dQl~~ 114 (264)
|+|+ +++|++|++||+|||+|+ +++|+ ++|||++
T Consensus 85 d~wa~~~~~~ld~~~~~e~GdLGpvYG~QWR~~~ay~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~~~iDQi~~ 164 (327)
T 3v8h_A 85 DANANENAQWLANPYRRGADDLGDVYGVQWRRWPGYKVLDAHADAQIADATSRGFRIVARFEEGGADKVLLHKAIDQLRD 164 (327)
T ss_dssp HHHHHTCHHHHTCTTCCSTTBCCSCTHHHHHHEEEEEEEETTCHHHHHHHHHTTCEEEEEEEETTEEEEEEEEEECHHHH
T ss_pred ccchhhhhhhhcccccccCCCCCcchhhHhhhccccccccccchhhhhhhhcccceeccccCCCcccccccccchHHHHH
Confidence 9999 678999999999999998 45677 7999999
Q ss_pred HHHHHhcCCCCcccEEEccCccccccCCCCCcceEEEE--EEECCeEEEEEeeecccccccccccHHHHHHHHHHHHHHc
Q psy2405 115 VIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQF--YVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHET 192 (264)
Q Consensus 115 vi~~Lk~~p~sRR~ii~~w~p~d~~~~~~~PC~~~~qf--~v~~gkL~l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~ 192 (264)
||++||+||+|||+|+++|||.++++|++||||.++|| +|++|+|+|+++|||+|+++|+|||+++|++|++|||++|
T Consensus 165 vI~~Lk~nP~SRR~ivsaWnp~dl~~malpPCh~~~qF~~~V~~gkL~~~lyqRS~D~~lG~PfNiasyalL~~miA~~~ 244 (327)
T 3v8h_A 165 CLDTIVRDPSSRRILFHGWNPAVLDEIALPACHLLYQFLPNVERREISLCLYIRSNDVGLGTPFNLAEGAALLTLVGRLT 244 (327)
T ss_dssp HHHHHHHCTTCSCCEEECCCGGGGGGSSSCCSEEEEEEEEETTTTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCccceEEEecChhHhccCCCCCCceEEEEeeeecCCeEEEEEEeehhhhHhHhhccHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEecccccchhhHHHHHHHhhcCCCCCCeEEeCCCCCCCCCc-----------ccCcEEEeCCCCCCCCCcc
Q psy2405 193 GLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDY-----------NFEDFQINSYNPQKSIYAP 261 (264)
Q Consensus 193 gl~~G~~~~~~~~~HIY~~~~~~~~~~l~r~p~~~P~l~~~~~~~~~~~~-----------~~~df~l~~Y~~~p~i~~~ 261 (264)
|+++|+|+|+++|+|||+||+|++++||+|+|+++|+|+|++++++|+|| +++||+|+||+|||+||+|
T Consensus 245 gl~~G~~~h~~gdaHIY~nHie~~~eqL~R~p~~~P~l~i~~~~~~i~d~~~y~~~w~~~~~~~Df~l~~Y~~hp~Ik~~ 324 (327)
T 3v8h_A 245 GYSPRWFTYFIGDAHIYENQLDMLKQQLEREPFESPRLELAERVPDYAKTGKYEPQWLERVEPSDFTLVGYRHHEPLSAP 324 (327)
T ss_dssp TCEEEEEEEEEEEEEEEGGGHHHHHHHHHSCCCCCCEEEECTTSCCHHHHCCCCTTHHHHCCGGGEEEESCCCC------
T ss_pred CCeeeEEEEEEeeeEeehhHHHHHHHHhCCCCCCCCEEEECCCCCCHHHhhcccccccccCCccceEEECCCCCCcCCCC
Confidence 99999999999999999999999999999999999999999999999999 7999999999999999999
Q ss_pred ccC
Q psy2405 262 IAI 264 (264)
Q Consensus 262 ~av 264 (264)
|||
T Consensus 325 ~AV 327 (327)
T 3v8h_A 325 MAV 327 (327)
T ss_dssp ---
T ss_pred ccC
Confidence 998
No 8
>1j3k_C Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: d.117.1.1 PDB: 1j3i_C* 1j3j_C* 3dg8_C* 3dga_C*
Probab=100.00 E-value=5e-100 Score=699.30 Aligned_cols=264 Identities=49% Similarity=0.846 Sum_probs=257.7
Q ss_pred ChHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcccccCCCChHHHhhCCcccc
Q psy2405 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIW 80 (264)
Q Consensus 1 ~~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~iW 80 (264)
|+||+++|++||++|..+.||||++|+|+||+++||||++|||++||||++||++++||+|||+|++|+++|+++|++||
T Consensus 45 e~qYldl~~~Il~~G~~~~dRTGtgT~svfg~q~rfdL~~gFPllTtKkv~~ks~i~ELLWfl~G~tni~~L~e~gv~IW 124 (328)
T 1j3k_C 45 EYQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELLWFIRGETNGNTLLNKNVRIW 124 (328)
T ss_dssp HHHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEETTTCCCCCSSSCCCCHHHHHHHHHHHTTCCBHHHHHTTTCCTT
T ss_pred HHHHHHHHHHHHHcCCccCCCCCCceEeecceEEEEccccCCcccccccccchhcHHHHHHHHhCCccHHHHHHcCCccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc------------cCCCCCccccccccccccC--------CCCccchHHHHHHHHhcCCCCcccEEEccCcccccc
Q psy2405 81 DQWAD------------ENGDLGPIYGYQWRSWPTL--------QGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHK 140 (264)
Q Consensus 81 ~~~~~------------~~g~~g~~YG~~~r~~~~~--------~g~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~d~~~ 140 (264)
|+|++ ++|++|++||+|||+|+++ +|+++|||+.||++||+||+|||+|+++|||.++++
T Consensus 125 d~wa~~~~ld~~g~~~~e~GdLGpvYG~QwR~~~~~y~~~~~~y~g~~iDQi~~vI~~Lk~nP~SRR~IvsaWnp~dl~~ 204 (328)
T 1j3k_C 125 EANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQ 204 (328)
T ss_dssp SGGGSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTSCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCGGGGGG
T ss_pred CccchhhhhhccccccccCCcccccCchHhhcCCcccccccccccccchHHHHHHHHHHhcCCCCceEEEEccCHHHhcC
Confidence 99974 3899999999999999753 477899999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEEECCeEEEEEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEecccccchhhHHHHHHHh
Q psy2405 141 MKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQL 220 (264)
Q Consensus 141 ~~~~PC~~~~qf~v~~gkL~l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l 220 (264)
|+|||||.++||+|++|+|+|++||||+|+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||+++|++||
T Consensus 205 maLpPCh~~~QF~V~~gkLs~~lyQRS~D~~LG~PfNiasyalL~~miAq~~Gle~Gefih~igdaHIY~nhie~v~~qL 284 (328)
T 1j3k_C 205 MALPPCHILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQL 284 (328)
T ss_dssp SSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHT
T ss_pred CCCCCceeEEEEEEeCCEEEEEEEehhhhHHHhhcchHHHHHHHHHHHHHHHCCeeeEEEEEEeeeEeeHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEeCCCCCCCCCcccCcEEEeCCCCCCCCCccccC
Q psy2405 221 LRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264 (264)
Q Consensus 221 ~r~p~~~P~l~~~~~~~~~~~~~~~df~l~~Y~~~p~i~~~~av 264 (264)
+|+|+++|+|+|++++++|+||+++||+|+||+|||+||+||||
T Consensus 285 ~R~P~~~P~l~i~~~~~~i~df~~~Df~l~~Y~~hp~Ik~~vAV 328 (328)
T 1j3k_C 285 NRIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMAA 328 (328)
T ss_dssp TSCCCCCCEEEECTTCCSGGGCCGGGEEEECCCCCCCCCCCSCC
T ss_pred cCCCCCCCeeEeCCCCCchhhCCHhHEEEeCCCCCCcCcccccC
Confidence 99999999999999999999999999999999999999999998
No 9
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=100.00 E-value=2.7e-100 Score=711.26 Aligned_cols=264 Identities=60% Similarity=1.114 Sum_probs=242.2
Q ss_pred ChHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcccccCCCChHHHhhCCcccc
Q psy2405 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIW 80 (264)
Q Consensus 1 ~~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~iW 80 (264)
|+||+++|++||++|+.+.||||++|+|+||+++||||++|||++||||++||++++||+|||+|++|+++|+++|++||
T Consensus 97 ~~~Yl~l~~~Il~~G~~~~dRTG~~T~s~fg~~~rfdl~~gfPllTtkk~~~k~~i~EllWfl~G~tn~~~L~~~gv~iW 176 (360)
T 3ix6_A 97 MRTYLDLLQHVLDHGVDRDDRTGTGTRSVFGYQMRFDLEEGFPVLTTKKLHLRSIIHELLWFLKGDTNIAYLKENGVTIW 176 (360)
T ss_dssp CHHHHHHHHHHHHHCEEECC----CEEEEEEEEEEEEGGGCCCCC---CCCHHHHHHHHHHHHHCCCBTHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHHhCcCCCCCCCccEEEeccceeEEecCCCCcccccccccHHHHHHHHHHHHcCCCcHHHHHHhCCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCccccccccccccCCCCccchHHHHHHHHhcCCCCcccEEEccCccccccCCCCCcceEEEEEEECCeEE
Q psy2405 81 DQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLS 160 (264)
Q Consensus 81 ~~~~~~~g~~g~~YG~~~r~~~~~~g~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~d~~~~~~~PC~~~~qf~v~~gkL~ 160 (264)
|+|++++|++|++||+|||+|++++|+++|||++||++||+||+|||+++++|||.++++|++||||.++||+|++|+|+
T Consensus 177 d~wa~~~g~lG~vYG~qwR~~~~~~g~~iDQi~~vI~~Lk~nP~SRR~ivs~wnp~dl~~mal~PCh~~~qF~V~~g~L~ 256 (360)
T 3ix6_A 177 DEWADENGDLGPVYGYQWRSWPAPDGRHIDQIANLLKMLHTNPQSRRLIVSAWNPALVDEMALPPCHCLFQFYVANGRLS 256 (360)
T ss_dssp GGGCCTTSBCSSCHHHHHHHEECTTSCEECHHHHHHHHHHHCTTCSCCEEECCCHHHHTTCSSCCSEEEEEEEEETTEEE
T ss_pred chhcccCCCCccchhhhheeecCCCCCchHHHHHHHHHHhcCCCcceeEEEecChHHhccCCCCCCcEEEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEecccccchhhHHHHHHHhhcCCCCCCeEEeCCCCCCCC
Q psy2405 161 CQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 240 (264)
Q Consensus 161 l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l~r~p~~~P~l~~~~~~~~~~ 240 (264)
|++||||+|+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||+|++++||+|+|+++|+|+|++++++|+
T Consensus 257 ~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~e~~~~qL~R~p~~~P~l~i~~~~~~~~ 336 (360)
T 3ix6_A 257 CQLYQRSADIFLGVPFNIASYALLTMMIAQVTGLKPGEFIHTLGDAHIYSNHFEQARLQLTRTPKKLPVMHINPDVKDLF 336 (360)
T ss_dssp EEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHTTSCCCCCCEEEECTTCCSGG
T ss_pred EEEEehhhhHHHhhhhHHHHHHHHHHHHHHHhCCcceEEEEEEeeeEEeHHHHHHHHHHhcCCCCCCCEEEECCCCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCcEEEeCCCCCCCCCccccC
Q psy2405 241 DYNFEDFQINSYNPQKSIYAPIAI 264 (264)
Q Consensus 241 ~~~~~df~l~~Y~~~p~i~~~~av 264 (264)
||+++||+|+||+|||+||+||||
T Consensus 337 d~~~~Df~l~~Y~~hp~ik~~~av 360 (360)
T 3ix6_A 337 AFRFEDFRLDGYEADPTIKAPIAV 360 (360)
T ss_dssp GCCGGGEEEEC-------------
T ss_pred cCCHhHEEEECCcCCCcCCccccC
Confidence 999999999999999999999998
No 10
>1f28_A Thymidylate synthase; beta-sheet, protein-inhibitor complex, transferase; HET: UMP F89; 1.90A {Pneumocystis carinii} SCOP: d.117.1.1 PDB: 1ci7_A*
Probab=100.00 E-value=4.6e-100 Score=693.92 Aligned_cols=264 Identities=47% Similarity=0.904 Sum_probs=257.6
Q ss_pred ChHHHHHHHHHHHcCeeecCCCCceEEEEcce-eEEEecCCC-CceeeeeecccccchhhhcccccCCCChHHHhhCCcc
Q psy2405 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGY-QMRFNLQKG-FPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIK 78 (264)
Q Consensus 1 ~~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~-~~~~dl~~~-fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~ 78 (264)
|+||+++|++||++|+.+.||||++|+|+||+ ++||||+++ ||++||||++||++++||+|||+|+||+++|+++|++
T Consensus 6 e~qYldl~~~Il~~G~~~~dRTG~gT~s~fg~pq~rfdl~~g~fPllTtKkv~~ks~i~ELLWfl~G~tn~~~L~~~gv~ 85 (297)
T 1f28_A 6 EQQYLNLVQYIINHGEDRPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRGVIEELLWFIRGETDSLKLREKNIH 85 (297)
T ss_dssp HHHHHHHHHHHHHHCEEEECTTSSEEEEEESCCCEEEECGGGBCCCCSSSCCCHHHHHHHHHHHHTTCCBHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHcCCCcCCCCCCceEeeeccceEEEecCCCcccccccCCccccccHHHHHHHHhCCCcHHHHHHcCCC
Confidence 47999999999999999999999999999999 999999998 9999999999999999999999999999999999999
Q ss_pred ccccccc------------cCCCCCccccccccccccC--------CCCccchHHHHHHHHhcCCCCcccEEEccCcccc
Q psy2405 79 IWDQWAD------------ENGDLGPIYGYQWRSWPTL--------QGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDI 138 (264)
Q Consensus 79 iW~~~~~------------~~g~~g~~YG~~~r~~~~~--------~g~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~d~ 138 (264)
|||+|++ ++|++|++||+|||+|+++ .|+++|||++||++||+||+|||+|+++|||+|+
T Consensus 86 IWd~w~~~~~l~~~g~~~~~~GdlGpvYG~qwR~~~~~Y~~~~~~y~g~~iDQi~~vI~~Lk~nP~SRR~ivs~wnp~dl 165 (297)
T 1f28_A 86 IWDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFGAEYIDCKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWNPADL 165 (297)
T ss_dssp TTHHHHSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCTTTG
T ss_pred cCCccccHHHHhhcccccccCCcccccchhhhhcCCccccCcccccCCCCHHHHHHHHHHHhcCCCCceEEEEecChhHh
Confidence 9999965 7899999999999999753 2678999999999999999999999999999999
Q ss_pred ccCCCCCcceEEEEEEE------CCeEEEEEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEecccccchhh
Q psy2405 139 HKMKLPPCHILFQFYVA------NNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNH 212 (264)
Q Consensus 139 ~~~~~~PC~~~~qf~v~------~gkL~l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~ 212 (264)
++|+|||||.++||+|+ +|+|+|++||||+|+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||
T Consensus 166 ~~malpPCh~~~QF~V~~~~~~~~gkL~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh 245 (297)
T 1f28_A 166 EKMALPPCHMFCQFYVHIPSNNHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHIYKDH 245 (297)
T ss_dssp GGSSSCCSEEEEEEEECCCSTTSCCEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEHHH
T ss_pred hcCCCCCceeEEEEEEeccCCCCCCcEEEEEEhhhhhHHhhhhhhHHHHHHHHHHHHHHhCCeeEEEEEEeeeeEeeHhH
Confidence 99999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCeEEeCCCCCCCCCcccCcEEEeCCCCCCCCCccccC
Q psy2405 213 LDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264 (264)
Q Consensus 213 ~~~~~~~l~r~p~~~P~l~~~~~~~~~~~~~~~df~l~~Y~~~p~i~~~~av 264 (264)
++++++||+|+|+++|+|+|++++++|+||++|||+|+||+|||+||+||||
T Consensus 246 ~e~v~~qL~R~p~~~P~l~i~~~~~~i~d~~~~Df~l~~Y~~hp~Ik~~~av 297 (297)
T 1f28_A 246 IEALQQQLTRSPRPFPTLSLNRSITDIEDFTLDDFNIQNYHPYETIKMKMSI 297 (297)
T ss_dssp HHHHHTGGGSCCCCCCEEEECSCCCSGGGCCGGGEEEESCCCCCCCCCCCCC
T ss_pred HHHHHHHHhcCCCCCCEeeeCCCCCchhhCChhHEEEeCCCCCCCCcccccC
Confidence 9999999999999999999999999999999999999999999999999998
No 11
>1hw4_A TS, thymidylate synthase; methyltransferase, transferase; HET: CME; 2.06A {Homo sapiens} SCOP: d.117.1.1 PDB: 3n5e_A 3n5g_A*
Probab=100.00 E-value=1.5e-99 Score=700.02 Aligned_cols=264 Identities=53% Similarity=0.945 Sum_probs=246.3
Q ss_pred ChHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcccccCCCChHHHhhCCcccc
Q psy2405 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIW 80 (264)
Q Consensus 1 ~~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~iW 80 (264)
|+||+++|++||++|+.+.||||++|+|+||.++||||+++||++||||++||++++||+|||+|++|+++|+++|++||
T Consensus 72 e~qYldll~~IL~~G~~~~dRTGtgT~sifG~q~rfdL~~gFPllTTKkv~~ksii~ELLWfl~Gstni~~L~e~gv~IW 151 (355)
T 1hw4_A 72 ELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKGVKIW 151 (355)
T ss_dssp HHHHHHHHHHHHHHCEEEECTTSCEEEEEEEEEEEEECSSCCCCCSSSCCCHHHHHHHHHHHHTTCCBHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHcCCCcCCCCCCceecccceeEEEeCCcCCcccccccccccccHHHHHHHHhCCCcHHHHHHcCCccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc------------cCCCCCcccccccccccc----C----CCCccchHHHHHHHHhcCCCCcccEEEccCcccccc
Q psy2405 81 DQWAD------------ENGDLGPIYGYQWRSWPT----L----QGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHK 140 (264)
Q Consensus 81 ~~~~~------------~~g~~g~~YG~~~r~~~~----~----~g~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~d~~~ 140 (264)
|+|++ ++|++|++||+|||+|++ + .|+++|||++||++||+||+|||+|+++|||+++++
T Consensus 152 d~w~~~~~l~~~g~~~~e~GdLGpvYG~QwR~~~~~y~~~~~~y~g~~iDQi~~VI~~Lk~nP~SRR~IvsaWNp~dl~~ 231 (355)
T 1hw4_A 152 DANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPL 231 (355)
T ss_dssp -------------------CBCCSCHHHHHHHBTSCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEEECCGGGTTT
T ss_pred CCcchHHHhhccCcccccCCcccCccchhhhcCcccccCCccccCCCChHHHHHHHHHHhcCCCCceEEEEccChhhhhc
Confidence 99964 689999999999999974 2 277899999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEEECCeEEEEEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEecccccchhhHHHHHHHh
Q psy2405 141 MKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQL 220 (264)
Q Consensus 141 ~~~~PC~~~~qf~v~~gkL~l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l 220 (264)
|+|||||.++||+|++|+|+|++||||+|+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||++++++||
T Consensus 232 maLpPCh~~~QF~V~~gkLs~~lyQRS~D~~LGvPfNIasyalLt~miAq~~Gle~GefvhtigdaHIY~nHie~vkeqL 311 (355)
T 1hw4_A 232 MALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQL 311 (355)
T ss_dssp SSSCCCSEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHT
T ss_pred CCCCCceeEEEEEEeCCEEEEEEEehhhhhhhhhcchHHHHHHHHHHHHHHHCCeeEEEEEEEEEeEeeHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEeCCCCCCCCCcccCcEEEeCCCCCCCCCccccC
Q psy2405 221 LRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264 (264)
Q Consensus 221 ~r~p~~~P~l~~~~~~~~~~~~~~~df~l~~Y~~~p~i~~~~av 264 (264)
+|+|+++|+|+|++++++|+||++|||+|+||+|||+||+||||
T Consensus 312 ~ReP~~~P~L~in~~~~~i~df~~eDf~l~~Y~~hp~Ik~~vAV 355 (355)
T 1hw4_A 312 QREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 355 (355)
T ss_dssp TSCCCCCCEEEECSCCCSGGGCCGGGEEEESCCCCCCCCCC---
T ss_pred hcCCCCCCeeEeCCCCCchhhCChhHEEEeCCCCCCcCcccccC
Confidence 99999999999999999999999999999999999999999998
No 12
>2aaz_A TS, tsase, thymidylate synthase; methyl transferase, nucleotide biosynthesis, transferase; HET: UMP CB3; 2.08A {Filobasidiella neoformans}
Probab=100.00 E-value=2.7e-99 Score=693.01 Aligned_cols=264 Identities=44% Similarity=0.816 Sum_probs=257.1
Q ss_pred ChHHHHHHHHHHHcCeeecCCCCceEEEEcce-eEEEecCCC-CceeeeeecccccchhhhcccccCCCChHHHhhCCcc
Q psy2405 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGY-QMRFNLQKG-FPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIK 78 (264)
Q Consensus 1 ~~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~-~~~~dl~~~-fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~ 78 (264)
|+||+++|++||++|+.+.||||++|+|+||+ ++||||+++ ||++||||++||++++||+|||+|+||+++|+++|++
T Consensus 20 e~qYldl~~~Il~~G~~~~dRTGtgT~sifg~~q~rfdL~~g~fPllTtKkv~~ks~i~ELLWfl~G~tni~~L~~~gv~ 99 (317)
T 2aaz_A 20 EYQYLDLIRRIINVGEVRPDRTGTGTVALFAPPSFRFSLADNTLPLLTTKRVFLRGVIAELLWFVSGCTDAKMLSSQGVG 99 (317)
T ss_dssp HHHHHHHHHHHHHHCEEECCTTSSCEEEEESCCCEEEECCTTBCCCCCSSCCCHHHHHHHHHHHHHTCCBTHHHHTTTCC
T ss_pred HHHHHHHHHHHHHcCCCccCCCCCceEeecCceeEEEecCCCcceecccCccchHhhHHHHHHHHhCCCcHHHHHhcCCc
Confidence 47999999999999999999999999999999 999999998 9999999999999999999999999999999999999
Q ss_pred ccccccc------------cCCCCCcccccccccccc----C----CCCccchHHHHHHHHhcCCCCcccEEEccCcccc
Q psy2405 79 IWDQWAD------------ENGDLGPIYGYQWRSWPT----L----QGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDI 138 (264)
Q Consensus 79 iW~~~~~------------~~g~~g~~YG~~~r~~~~----~----~g~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~d~ 138 (264)
|||+|++ ++|++|++||+|||+|++ + .|+++|||++||++||+||+|||+|+++|||.++
T Consensus 100 IWd~w~~~~~l~~~g~~~~~~GdlGpvYG~qwR~~~~~Y~~~~~dy~G~~iDQi~~vI~~Lk~nP~SRR~IvsaWnp~dl 179 (317)
T 2aaz_A 100 IWDGNGSKEFLEKVGLGHRREGDLGPVYGFQWRHFGAEYTDADGDYKGKGVDQLQRVIDTIKNNPTDRRIILSAWNPKDL 179 (317)
T ss_dssp TTHHHHSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTCCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCTTTG
T ss_pred ccCcchhhhhhhccCcccccCCCcCcccchHhhcCCccccCcccccccccHHHHHHHHHHHhcCCCCceEEEEecChhHh
Confidence 9999964 789999999999999984 2 2778999999999999999999999999999999
Q ss_pred ccCCCCCcceEEEEEEE---------CCeEEEEEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEecccccc
Q psy2405 139 HKMKLPPCHILFQFYVA---------NNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLY 209 (264)
Q Consensus 139 ~~~~~~PC~~~~qf~v~---------~gkL~l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY 209 (264)
++|+|||||.++||+|+ +|+|+|++||||+|+++|+|||+++|++|++|||++||+++|+|+|+++|+|||
T Consensus 180 ~~maLpPCh~~~QF~V~~~~~~~~~~~gkL~~~lyQRS~D~~LGvPfNiasyalL~~miA~~~gl~~G~f~h~~gdaHIY 259 (317)
T 2aaz_A 180 PLMALPPCHMFCQFFVSLPPADSPGSKPKLSCLMYQRSCDLGLGVPFNIASYALLTHMIALITDTEPHEFILQMGDAHVY 259 (317)
T ss_dssp GGSSSCCSEEEEEEEEECCCTTCTTSCCEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEE
T ss_pred hcCCCCCcceEEEEEEecccccCCCCCCeEEEEEEeehhhhhhhhhhHHHHHHHHHHHHHHHhCCeeEEEEEEeeeeEee
Confidence 99999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhcCCCCCCeEEeCCC---CCCCCCcccCcEEEeCCCCCCCCCccccC
Q psy2405 210 LNHLDQARKQLLRNPGSLPNLTILCK---PKSSLDYNFEDFQINSYNPQKSIYAPIAI 264 (264)
Q Consensus 210 ~~~~~~~~~~l~r~p~~~P~l~~~~~---~~~~~~~~~~df~l~~Y~~~p~i~~~~av 264 (264)
+||+++|++||+|+|+++|+|+|+++ +++|+||+++||+|+||+|||+||+||||
T Consensus 260 ~nH~e~v~~qL~R~p~~~P~l~i~~~~~~~~~i~d~~~eDf~l~~Y~~hp~Ik~~vaV 317 (317)
T 2aaz_A 260 RDHVEPLKTQLEREPRDFPKLKWARSKEEIGDIDGFKVEDFVVEGYKPWGKIDMKMSA 317 (317)
T ss_dssp GGGHHHHHHHHTSCCCCCCEEEESSCHHHHCSTTCCCGGGEEEECCCCCCCCCCCCCC
T ss_pred HhHHHHHHHHHhcCCCCCCeEEECCccCCCCchhhCChhHEEEeCCCCCCcCcccccC
Confidence 99999999999999999999999998 89999999999999999999999999998
No 13
>1bkp_A Thymidylate synthase A; methyltransferase, DTMP synthase; 1.70A {Bacillus subtilis} SCOP: d.117.1.1 PDB: 1bko_A 1bsf_A 1bsp_A 1b02_A*
Probab=100.00 E-value=6.9e-99 Score=681.22 Aligned_cols=263 Identities=36% Similarity=0.662 Sum_probs=256.7
Q ss_pred ChHHHHHHHHHHHcCeeecC----------CCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcc-cccCCCCh
Q psy2405 1 MHQYLNFMRHVYNSGIKKID----------RTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIW-FLSGSTNI 69 (264)
Q Consensus 1 ~~~Y~~~l~~Il~~G~~~~~----------rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W-~l~G~~~~ 69 (264)
|+||+++|++||++|+.+++ |||++|+|+||+++||| +++||++||||+++|++++||+| |++|+||+
T Consensus 4 ~~~Yl~l~~~Il~~G~~~~d~~~r~~~~~drTg~~T~s~fg~~~r~d-~~~fPllTtkk~~~k~~i~EllWifl~G~tn~ 82 (278)
T 1bkp_A 4 DKQYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFD-NSEVPILTTKKVAWKTAIKELLWIWQLKSNDV 82 (278)
T ss_dssp HHHHHHHHHHHHHHCEECTTSCCCCBBTTTCCBCCEEEEEEEEEEEC-SSSCCCCSSSCCCHHHHHHHHHHHHTSCCCBH
T ss_pred HHHHHHHHHHHHHcCccCCCcccccccccCCCCCceEEecceEEEEc-cccccccccccccHHhhHHHHHHHHHcCCCcH
Confidence 78999999999999998866 79999999999999999 99999999999999999999999 99999999
Q ss_pred HHHhhCCccccccccccCCCCCccccccccccc-cCCCCccchHHHHHHHHhcCCCCcccEEEccCccccccCCCCCcce
Q psy2405 70 NFLKKNNIKIWDQWADENGDLGPIYGYQWRSWP-TLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHI 148 (264)
Q Consensus 70 ~~l~~~~~~iW~~~~~~~g~~g~~YG~~~r~~~-~~~g~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~d~~~~~~~PC~~ 148 (264)
++|+++|++|||+|++++|++|++||+|||+|+ .++|+++|||++||++||+||+|||+|+++|||.++++|++||||.
T Consensus 83 ~~L~~~gv~iWd~w~~~~gdlG~vYG~qwr~~~~~~~g~~iDQi~~vI~~Lk~nP~SRR~ivs~wnp~dl~~m~lpPC~~ 162 (278)
T 1bkp_A 83 NDLNMMGVHIWDQWKQEDGTIGHAYGFQLGKKNRSLNGEKVDQVDYLLHQLKNNPSSRRHITMLWNPDELDAMALTPCVY 162 (278)
T ss_dssp HHHHTTTCCTTGGGCCTTSBCBSCTHHHHHCCCEEETTEEECHHHHHHHHHHHSTTCSCCEEESCCTTTGGGBSSCCSEE
T ss_pred HHHHHhCCCccccccccCCcccccccHhhhhccCCCCCcchHHHHHHHHHHhcCCCCCcEEEEecChhhhhccCCCCeeE
Confidence 999999999999999999999999999999994 3456679999999999999999999999999999999999999999
Q ss_pred EEEEEEECCeEEEEEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEecccccchhhHHHHHHHhhcCCCCCC
Q psy2405 149 LFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLP 228 (264)
Q Consensus 149 ~~qf~v~~gkL~l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l~r~p~~~P 228 (264)
++||+|++|+|+|++||||+|+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||+++|++||+|+|+++|
T Consensus 163 ~~qF~V~~gkL~~~lyqRS~D~~lG~pfNi~syalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~e~v~~qL~r~p~~~P 242 (278)
T 1bkp_A 163 ETQWYVKHGKLHLEVRARSNDMALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCHVYTRHIDNLKIQMEREQFEAP 242 (278)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHHHSCCCCCC
T ss_pred EEEEEEECCEEEEEEEhhhhHHHhhhhhHHHHHHHHHHHHHHHhCCeeEEEEEEEEeEEEcHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeCCCCCCCCCcccCcEEEeCCCCCCCCCccccC
Q psy2405 229 NLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264 (264)
Q Consensus 229 ~l~~~~~~~~~~~~~~~df~l~~Y~~~p~i~~~~av 264 (264)
+|+|++++++|+||+++||+|+||+|||+||+||||
T Consensus 243 ~l~i~~~~~~~~d~~~~Df~l~~Y~~hp~ik~~~av 278 (278)
T 1bkp_A 243 ELWINPEVKDFYDFTIDDFKLINYKHGDKLLFEVAV 278 (278)
T ss_dssp EEEECTTCCSGGGCCGGGEEEESCCCCCCCCCCCBC
T ss_pred EEEECCCCCchhhCCHhHEEEeCCCCCCcCcccccC
Confidence 999999999999999999999999999999999998
No 14
>1tis_A Thymidylate synthase; transferase(methyltransferase); 2.70A {Enterobacteria phage T4} SCOP: d.117.1.1
Probab=100.00 E-value=1e-99 Score=687.99 Aligned_cols=259 Identities=47% Similarity=0.857 Sum_probs=255.6
Q ss_pred ChHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcccccCCCChHHHhh------
Q psy2405 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKK------ 74 (264)
Q Consensus 1 ~~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~------ 74 (264)
|+||+++|++|+++|+.++||||++|+|+||+++||||++|||++||||++||++++||+|||+|+||+++|++
T Consensus 1 ~~qYl~l~~~Il~~G~~~~dRTG~gT~sifg~q~r~dl~~gfPllTtkk~~~ks~i~ELLWfl~G~tn~~~L~~~~~~~~ 80 (286)
T 1tis_A 1 MKQYQDLIKDIFENGYETDDRTGTGTIALFGSKLRWDLTKGFPAVTTKKLAWKACIAELIWFLSGSTNVNDLRLIQHDSL 80 (286)
T ss_dssp CCHHHHHHHHHHTTCCEECCSSCSCEEEEECCEEEEEGGGCCCCCCSSCCCCHHHHHHHHHHHHTCCBHHHHHHHHHSCS
T ss_pred ChHHHHHHHHHHHcCCccCCCCCCceEeecceEEEEecCCCCcccccccccHHHHHHHHHHHHcCCCcHHHHHhhhcccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCccccccccccC--------CCCCccccccccccccCCCCccchHHHHHHHHhcCCCCcccEEEccCccccccCCCCC
Q psy2405 75 -NNIKIWDQWADEN--------GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPP 145 (264)
Q Consensus 75 -~~~~iW~~~~~~~--------g~~g~~YG~~~r~~~~~~g~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~d~~~~~~~P 145 (264)
+|++|||+|++++ |++|++||+|||+|+ ++|||++||++||+||+|||+++++|||.|+++|++||
T Consensus 81 ~~gv~iWd~~~~~~~l~~~~~~GdlG~vYG~qwR~~~-----~~DQi~~vI~~Lk~nP~SRR~ivs~Wnp~dl~~malpP 155 (286)
T 1tis_A 81 IQGKTVWDENYENQAKDLGYHSGELGPIYGKQWRDFG-----GVDQIIEVIDRIKKLPNDRRQIVSAWNPAELKYMALPP 155 (286)
T ss_dssp SSSCCTTHHHHTTTTGGGTCCTTBCCSCHHHHHHCBT-----TBCHHHHHHHHHHHSTTCSCCBCCCCCGGGGGGCSSCC
T ss_pred ccCCcccccccccchhhhcccCCcchhhhHHHHhcCC-----cchHHHHHHHHHhcCCCCccEEEEecChhHhhcCCCCC
Confidence 8999999999888 999999999999996 69999999999999999999999999999999999999
Q ss_pred cceEEEEEEECCeEEEEEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEecccccchhhHHHHHHHhhcCCC
Q psy2405 146 CHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPG 225 (264)
Q Consensus 146 C~~~~qf~v~~gkL~l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l~r~p~ 225 (264)
||.++||+|++|+|+|++||||+|+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||+|+|++||+|+|+
T Consensus 156 Ch~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~e~v~~qL~R~p~ 235 (286)
T 1tis_A 156 CHMFYQFNVRNGYLDLQWYQRSVDVFLGLPFNIASYATLVHIVAKMCNLIPGDLIFSGGNTHIYMNHVEQCKEILRREPK 235 (286)
T ss_dssp SEEEEEEEECSSEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEESSCCTTTGGGSSCCCC
T ss_pred ceEEEEEEEeCCEEEEEEEehhhhHHHhhcchHHHHHHHHHHHHHHHCCeeEEEEEEEeeeEeeHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeCCC------------CCCCCCcccCcEEEeCCCCCCCCCccccC
Q psy2405 226 SLPNLTILCK------------PKSSLDYNFEDFQINSYNPQKSIYAPIAI 264 (264)
Q Consensus 226 ~~P~l~~~~~------------~~~~~~~~~~df~l~~Y~~~p~i~~~~av 264 (264)
++|+|+|+++ +++|+||+++||+|+||+|||+||+||||
T Consensus 236 ~~P~l~i~~~~~~~~~~~~~~~~~~~~d~~~~Df~l~~Y~~hp~ik~~~av 286 (286)
T 1tis_A 236 ELCELVISGLPYKFRYLSTKEQLKYVLKLRPKDFVLNNYVSHPPIKGKMAV 286 (286)
T ss_dssp SCCCCEECCCCGGGGGSCHHHHHHHHHTCCGGGEECSSCCCCCCCCCCCCC
T ss_pred CCCeEEECCcccccccccccccCCchhcCCceeEEEeCCCCCCcCCcCccC
Confidence 9999999988 88999999999999999999999999998
No 15
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Probab=100.00 E-value=1.4e-95 Score=707.49 Aligned_cols=264 Identities=47% Similarity=0.877 Sum_probs=259.1
Q ss_pred ChHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcccccCCCChHHHhhCCcccc
Q psy2405 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIW 80 (264)
Q Consensus 1 ~~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~iW 80 (264)
|+||+++|++||++|..+.||||++|+++||+++||||+++||++||||++||+++.||+||++|++|+++|+++|++||
T Consensus 232 ~~~Yl~l~~~il~~G~~~~dRtg~~t~s~fg~~~r~dl~~~fPllTtkk~~~k~~i~EllWfl~g~tn~~~l~~~g~~iW 311 (515)
T 3nrr_A 232 EFQYLDILADVLSHGVLKPNRTGTDAYSKFGYQMRFDLSRSFPLLTTKKVALRSIIEELLWFIKGSTNGNDLLAKNVRIW 311 (515)
T ss_dssp HHHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEETTTCCCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHTTTCCTT
T ss_pred HHHHHHHHHHHHHhCcCCCCCCCCCeEEeccceEEEecccCCcceeecccchhhhHHHHHHHHhCCccHHHHHHcCCeec
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-----c-------cccCCCCCcccccccccccc--------CCCCccchHHHHHHHHhcCCCCcccEEEccCcccccc
Q psy2405 81 DQ-----W-------ADENGDLGPIYGYQWRSWPT--------LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHK 140 (264)
Q Consensus 81 ~~-----~-------~~~~g~~g~~YG~~~r~~~~--------~~g~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~d~~~ 140 (264)
|+ | ++++|++|++||+|||+|++ ++|+++|||++||++||+||+|||+|+++|||.++++
T Consensus 312 d~n~~~~wl~~~~~~~~~~gdlG~vYG~qwr~~~~~~~~~~~~~~g~~~DQi~~vi~~lk~nP~sRR~i~s~wnp~~~~~ 391 (515)
T 3nrr_A 312 ELNGRRDFLDKNGFTDREEHDLGPIYGFQWRHFGAEYLDMHADYTGKGIDQLAEIINRIKTNPNDRRLIVCSWNVSDLKK 391 (515)
T ss_dssp HHHHSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCGGGGGG
T ss_pred CCcchhhhhhhcCCccccCCcCcchhhhheeeCCCccccccccCCccchhHHHHHHHHHhcCCCCceeEEEecChhhhcc
Confidence 97 6 67889999999999999986 3688999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEEECCeEEEEEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEecccccchhhHHHHHHHh
Q psy2405 141 MKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQL 220 (264)
Q Consensus 141 ~~~~PC~~~~qf~v~~gkL~l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l 220 (264)
|+|||||.++||+|++|+|+|++||||+|+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||+|++++||
T Consensus 392 malpPCh~~~qf~V~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~~~~~~ql 471 (515)
T 3nrr_A 392 MALPPCHCFFQFYVSDNKLSCMMHQRSCDLGLGVPFNIASYSILTAMVAQVCGLGLGEFVHNLADAHIYVDHVDAVTTQI 471 (515)
T ss_dssp SSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHH
T ss_pred CCCCCCceEEEEEEeCCEEEEEEEchhhhHHHhhhccHHHHHHHHHHHHHHhCCeeeEEEEEEEeEEEcHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEeCCCCCCCCCcccCcEEEeCCCCCCCCCccccC
Q psy2405 221 LRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264 (264)
Q Consensus 221 ~r~p~~~P~l~~~~~~~~~~~~~~~df~l~~Y~~~p~i~~~~av 264 (264)
+|+|+++|+|+|++++++|+||+++||+|+||+|||+||+||||
T Consensus 472 ~R~p~~~P~l~i~~~~~~~~~~~~~df~l~~Y~~~p~ik~~~av 515 (515)
T 3nrr_A 472 ARIPHPFPRLRLNPDIRNIEDFTIDDIVVEDYVSHPPIPMAMSA 515 (515)
T ss_dssp TSCCCCCCEEEECTTCCSGGGCCGGGEEEESCCCCCCCCCCCCC
T ss_pred cCCCCCCCEEEECCCCCChhcCCHhHEEEECCcCCCccCCCccC
Confidence 99999999999999999999999999999999999999999998
No 16
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A*
Probab=100.00 E-value=3.7e-95 Score=705.45 Aligned_cols=264 Identities=45% Similarity=0.833 Sum_probs=258.5
Q ss_pred ChHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcccccCCCChHHHhhCCcccc
Q psy2405 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIW 80 (264)
Q Consensus 1 ~~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~iW 80 (264)
|+||+++|++||++|+.++||||++|+|+||+++||||+++||++||||++||+++.||+|||+|+||+++|+++|++||
T Consensus 237 ~~~Yl~l~~~Il~~G~~~~dRtg~gt~s~fg~~~r~dl~~~fPllTtkk~~~k~~i~EllWfl~G~tn~~~l~~~gv~iW 316 (521)
T 3hj3_A 237 EFQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRSIFEELIWFIKGDTNGNHLIEKKVYIW 316 (521)
T ss_dssp HHHHHHHHHHHHHHCEEECCSSSSCEEEEEEEEEEEECSSSCCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHHcCcCcCCCCCCceEEeccceEEEccccCcceeeeccccHHHHHHHHHHHHhCCccHHHHHHcCCccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-----c-------cccCCCCCcccccccccccc--------CCCCccchHHHHHHHHhcCCCCcccEEEccCcccccc
Q psy2405 81 DQ-----W-------ADENGDLGPIYGYQWRSWPT--------LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHK 140 (264)
Q Consensus 81 ~~-----~-------~~~~g~~g~~YG~~~r~~~~--------~~g~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~d~~~ 140 (264)
|+ | ++++|++|++||+|||+|++ ++|+++|||++||++||+||+|||+++++|||.++++
T Consensus 317 d~n~~~~~l~~~~~~~~~~g~lG~vYG~qwr~~~~~~~~~~~~~~g~~~DQi~~vi~~lk~nP~sRR~ivs~wnp~d~~~ 396 (521)
T 3hj3_A 317 SGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMHDDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQ 396 (521)
T ss_dssp SGGGSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHSTTSSCCEEECCCTTTGGG
T ss_pred CccchhhhhhhcccccccCCcccchhhhheeeCCCccccccccccccchhHHHHHHHHHhcCCCcceeEEEecChhHhcc
Confidence 97 6 56789999999999999986 3688999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEEEC-CeEEEEEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEecccccchhhHHHHHHH
Q psy2405 141 MKLPPCHILFQFYVAN-NKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQ 219 (264)
Q Consensus 141 ~~~~PC~~~~qf~v~~-gkL~l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~ 219 (264)
|+|||||.++||+|++ |+|+|++||||+|+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||+|++++|
T Consensus 397 malpPCh~~~qf~V~~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~~~~~~q 476 (521)
T 3hj3_A 397 MALPPCHVLSQYYVTNDNCLSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQ 476 (521)
T ss_dssp SSSCCSEEEEEEEECTTSEEEEEEEESCCBTTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHH
T ss_pred CCCCCceEEEEEEECCCCcEEEEEEeehhhhhhhhcccHHHHHHHHHHHHHHhCCcceEEEEEeeeeEEehhHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCeEEeCCCCCCCCCcccCcEEEeCCCCCCCCCccccC
Q psy2405 220 LLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264 (264)
Q Consensus 220 l~r~p~~~P~l~~~~~~~~~~~~~~~df~l~~Y~~~p~i~~~~av 264 (264)
|+|+|+++|+|+|++++++|+||+++||+|+||+|||+||+||||
T Consensus 477 l~R~p~~~P~l~i~~~~~~~~d~~~~df~l~~Y~~hp~ik~~~av 521 (521)
T 3hj3_A 477 LSRTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 521 (521)
T ss_dssp TTSCCCCCCEEEESSCCSSGGGCCGGGEEEESCCCCCCCCCCCCC
T ss_pred hcCCCCCCCEEEECCCCCChhcCCHhHEEEECCcCCCccCCCccC
Confidence 999999999999999999999999999999999999999999998
No 17
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A*
Probab=100.00 E-value=3.8e-95 Score=705.31 Aligned_cols=264 Identities=45% Similarity=0.839 Sum_probs=257.8
Q ss_pred ChHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCC-CCceeeeeecccccchhhhcccccCCCChHHHhhCCccc
Q psy2405 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQK-GFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKI 79 (264)
Q Consensus 1 ~~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~-~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~i 79 (264)
|+||+++|++||++|..++||||++|+++||.++||||++ +||++||||++||+++.||+|||+|++|+++|+++|++|
T Consensus 237 ~~~Yl~l~~~il~~G~~~~drtg~~t~s~fg~~~r~dl~~~~fPllTtkk~~~k~~i~EllWfl~g~tn~~~l~~~g~~i 316 (521)
T 3irm_A 237 EEQYLSLVDRIIREGNVKHDRTGVGTLSIFGAQMRFSLRNNRLPLLTTKRVFWRGVCEELLWFLRGETYAKKLSDKGVHI 316 (521)
T ss_dssp HHHHHHHHHHHHHHCEEEECTTCCEEEEEEEEEEEEECGGGBCCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHTTTCCT
T ss_pred HHHHHHHHHHHHHhCcCCCCCCCCceEEecceeEEEeccCCCCcceeecccchhHHHHHHHHHHhCCCcHHHHHhcCCee
Confidence 6899999999999999999999999999999999999999 799999999999999999999999999999999999999
Q ss_pred ccc-----c-------cccCCCCCcccccccccccc--------CCCCccchHHHHHHHHhcCCCCcccEEEccCccccc
Q psy2405 80 WDQ-----W-------ADENGDLGPIYGYQWRSWPT--------LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIH 139 (264)
Q Consensus 80 W~~-----~-------~~~~g~~g~~YG~~~r~~~~--------~~g~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~d~~ 139 (264)
||+ | ++++|++|++||+|||+|++ ++|+++|||++||++||+||+|||+++++|||.+++
T Consensus 317 Wd~~~~~~~l~~~~~~~~~~gdlG~vYG~qwr~~~~~~~~~~~~~~g~~~DQi~~vi~~lk~nP~sRR~i~s~wnp~d~~ 396 (521)
T 3irm_A 317 WDDNGSRAFLDSRGLTEYEEMDLGPVYGFQWRHFGAAYTHHDANYDGQGVDQIKAIVETLKTNPDDRRMLFTAWNPSALP 396 (521)
T ss_dssp TSTTTSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCTTTGG
T ss_pred cCcccchhhhhhcCCccccCCcchhhhhhhhhcCCccccccccCCCCCchHHHHHHHHHHhcCCCCceEEEEecChhHhh
Confidence 998 6 56789999999999999986 368899999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEEECCeEEEEEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEecccccchhhHHHHHHH
Q psy2405 140 KMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQ 219 (264)
Q Consensus 140 ~~~~~PC~~~~qf~v~~gkL~l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~ 219 (264)
+|+|||||.++||+|++|+|+|++||||+|+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||+|++++|
T Consensus 397 ~malpPCh~~~qf~V~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~~~~~~q 476 (521)
T 3irm_A 397 RMALPPCHLLAQFYVSNGELSCMLYQRSCDMGLGVPFNIASYALLTILIAKATGLRPGELVHTLGDAHVYSNHVEPCNEQ 476 (521)
T ss_dssp GSSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHH
T ss_pred cCCCCCCceEEEEEEeCCEEEEEEEeehhhhhhhhcccHHHHHHHHHHHHHHhCCcceEEEEEEEEEEEehhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCeEEeCCCCCCCCCcccCcEEEeCCCCCCCCCccccC
Q psy2405 220 LLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264 (264)
Q Consensus 220 l~r~p~~~P~l~~~~~~~~~~~~~~~df~l~~Y~~~p~i~~~~av 264 (264)
|+|+|+++|+|+|++++++|+||+++||+|+||+|||+||+||||
T Consensus 477 l~R~p~~~P~l~i~~~~~~~~~~~~~df~l~~Y~~hp~ik~~~av 521 (521)
T 3irm_A 477 LKRVPRAFPYLVFRREREFLEDYEEGDMEVIDYAPYPPISMKMAV 521 (521)
T ss_dssp TTSCCCCCCEEEESCCCSBGGGCCGGGEEEESCCCCCCCSCCCC-
T ss_pred hcCCCCCCCEEEECCCCCChhcCCHhHEEEECCcCCCccCCCccC
Confidence 999999999999999999999999999999999999999999998
No 18
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine, antifolate resistance, oxidoreductase, transferase; HET: CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A* 4dp3_A* 4dph_A* 3qgt_A* 3um8_A* 4dpd_A* 3um5_A* 3um6_A*
Probab=100.00 E-value=4e-94 Score=704.29 Aligned_cols=264 Identities=49% Similarity=0.853 Sum_probs=258.0
Q ss_pred ChHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcccccCCCChHHHhhCCcccc
Q psy2405 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIW 80 (264)
Q Consensus 1 ~~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~iW 80 (264)
|+||+++|++||++|+.+.||||++|+|+||+++||||+++||++||||++||+++.||+|||+|++|+++|+++|++||
T Consensus 325 ~~qYldl~~~Il~~G~~~~dRTGtgT~s~fg~q~rfdL~~~fPllTtKkv~~k~ii~ELLWfl~G~tn~~~L~~~gv~IW 404 (608)
T 3qg2_A 325 EYQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELLWFIRGETNGNTLLNKNVRIW 404 (608)
T ss_dssp HHHHHHHHHHHHHHCEEECCSSSCCEEEEEEEEEEEETTTCCCCCCSSCCCCHHHHHHHHHHHTTCCBHHHHHTTTCCTT
T ss_pred HHHHHHHHHHHHHcCCccCCCCCCceEEecceeEEEccccCCceeecccccHHHHHHHHHHHHhCCccHHHHHHcCCCcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc------------ccccCCCCCccccccccccccC--------CCCccchHHHHHHHHhcCCCCcccEEEccCcccccc
Q psy2405 81 DQ------------WADENGDLGPIYGYQWRSWPTL--------QGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHK 140 (264)
Q Consensus 81 ~~------------~~~~~g~~g~~YG~~~r~~~~~--------~g~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~d~~~ 140 (264)
|+ |++++|++|++||+|||+|+++ +|+++|||++||++||+||+|||+++++|||.++++
T Consensus 405 d~n~~~~~~~~~~~~~~e~GdlGpvYG~QwR~~~~~y~~~~~~~~g~~iDQi~~vI~~Lk~nP~SRR~ivsaWnp~dl~~ 484 (608)
T 3qg2_A 405 EANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQ 484 (608)
T ss_dssp GGGGSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTSCCCCTTCCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCTTTGGG
T ss_pred CccchhhhhhccccccccCCCCchhhhHhhhcCCCccccchhcccccchHHHHHHHHHHhhCCCccceEEEecChhHhcc
Confidence 98 3457899999999999999863 678999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEEECCeEEEEEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEecccccchhhHHHHHHHh
Q psy2405 141 MKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQL 220 (264)
Q Consensus 141 ~~~~PC~~~~qf~v~~gkL~l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l 220 (264)
|+|||||.++||+|++|+|+|++||||+|+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||++++++||
T Consensus 485 maLpPCh~~~qF~V~~gkL~~~lyqRS~D~~lG~PfNiasyalL~~miA~~~gl~~G~fih~~gdaHIY~nH~e~~~~qL 564 (608)
T 3qg2_A 485 MALPPCHILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQL 564 (608)
T ss_dssp SSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHH
T ss_pred CCCCCceEEEEEEEeCCeEEEEEEeehhhhhhhhhccHHHHHHHHHHHHHHhCCeeeEEEEEeeeeEEeHhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEeCCCCCCCCCcccCcEEEeCCCCCCCCCccccC
Q psy2405 221 LRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264 (264)
Q Consensus 221 ~r~p~~~P~l~~~~~~~~~~~~~~~df~l~~Y~~~p~i~~~~av 264 (264)
+|+|+++|+|+|++++++|+||+++||+|+||+|||+||+||||
T Consensus 565 ~R~p~~~P~l~i~~~~~~i~df~~~Df~l~~Y~~hp~Ik~~~av 608 (608)
T 3qg2_A 565 NRIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMAA 608 (608)
T ss_dssp TSCCCCCCEEEECTTCCSGGGCCGGGEEEESCCCCCCCCSSCCC
T ss_pred cCCCCCCCEEEECCCCCChhcCCHhHEEEeCCcCCCccCcCccC
Confidence 99999999999999999999999999999999999999999998
No 19
>1b5e_A Protein (deoxycytidylate hydroxymethylase); DNTP synthesizing complex, transferase; HET: DCM; 1.60A {Enterobacteria phage T4} SCOP: d.117.1.1 PDB: 1b49_A* 1b5d_A*
Probab=100.00 E-value=2e-74 Score=515.24 Aligned_cols=217 Identities=24% Similarity=0.379 Sum_probs=207.3
Q ss_pred ChHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcccccCCCChHHHhhCCcccc
Q psy2405 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIW 80 (264)
Q Consensus 1 ~~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~iW 80 (264)
+++|++++++|+++|. ++||||++|+|+||.+++||. |++ +||++++++++||+||++|++|+++|++++++||
T Consensus 9 ~~~y~~l~~~Il~~G~-~~drtg~~t~s~~g~~~r~~~----P~~-~kk~~~k~~i~EllWfl~G~tn~~~l~~~~~~iw 82 (246)
T 1b5e_A 9 EEIRLHLGLALKEKDF-VVDKTGVKTIEIIGASFVADE----PFI-FGALNDEYIQRELEWYKSKSLFVKDIPGETPKIW 82 (246)
T ss_dssp HHHHHHHHHHHHTTCC-EECTTSCEEEEEEEEEEECCS----SCS-SSCCCHHHHHHHHHHHHHTCSBGGGSSSSCCHHH
T ss_pred HHHHHHHHHHHHHcCC-CcCCCCCceEEECcEEEEEcC----ccc-cccccHHHHHHHHHHHhhCCCcHHHHHhhcchhh
Confidence 3799999999999995 889999999999999999984 999 7999999999999999999999999999999999
Q ss_pred ccccccCCCCCccccccccccccCCCCccchHHHHHHHHhcCCCCcccEEEccCccccc-----cCCCCCcceEEEEEEE
Q psy2405 81 DQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIH-----KMKLPPCHILFQFYVA 155 (264)
Q Consensus 81 ~~~~~~~g~~g~~YG~~~r~~~~~~g~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~d~~-----~~~~~PC~~~~qf~v~ 155 (264)
++|++++|++|++|| ||.|.. +++|||++||++||+||+|||+++++|||.++. +|++||||.++||+|+
T Consensus 83 d~~~~~~g~lg~~YG--wR~~~~---~~~DQi~~vI~~Lk~nP~SRR~i~s~wnp~~~~d~~~~~m~l~PC~~~~qF~V~ 157 (246)
T 1b5e_A 83 QQVASSKGEINSNYG--WAIWSE---DNYAQYDMCLAELGQNPDSRRGIMIYTRPSMQFDYNKDGMSDFMCTNTVQYLIR 157 (246)
T ss_dssp HHHSCTTSBCSCCHH--HHHHCG---GGTCHHHHHHHHHHHCTTCSCCEEECCCTTHHHHTTGGGCCCCCCEEEEEEEEE
T ss_pred hhhcccCCCCCCCCC--eeECCC---CCchHHHHHHHHHhcCCCCCeEEEEecCchhhcccccccccCCceeEEEEEEEE
Confidence 999999999999999 888863 379999999999999999999999999999864 6999999999999999
Q ss_pred CCeEEEEEeeecccccccccccHH-----HHHHHHHHHHHH--cCCcceEEEEEecccccchhhHHHHHHHhhcCCCCCC
Q psy2405 156 NNKLSCQLYQRSADIFLGLPFNIA-----SYSLLIHIIAHE--TGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLP 228 (264)
Q Consensus 156 ~gkL~l~~~~RS~D~~~g~p~Ni~-----~~~~L~~~iA~~--~gl~~G~~~~~~~~~HIY~~~~~~~~~~l~r~p~~~P 228 (264)
+|||+|+++|||||+++|+|||++ +|++|++|||++ ||+++|+|+|+++|+|||+||+|+|++||+|+|.+.+
T Consensus 158 ~gkL~~~lyqRS~D~~lG~pfNi~~~~~~syalL~~miA~~~~~gl~~G~~~h~~gdaHIY~nh~e~~~~~L~r~~~~~~ 237 (246)
T 1b5e_A 158 DKKINAVVNMRSNDVVFGFRNDYAWQKYVLDKLVSDLNAGDSTRQYKAGSIIWNVGSLHVYSRHFYLVDHWWKTGETHIS 237 (246)
T ss_dssp TTEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEEEEEEEEEGGGHHHHHHHHHHCCSCCC
T ss_pred CCEEEEEEEhhhhhhhhhccchHHHhhhHHHHHHHHHHhhhhccCCceeEEEEEEEeEEEcHHHHHHHHHHHhhCCcccc
Confidence 999999999999999999999999 999999999999 9999999999999999999999999999999997654
No 20
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=37.78 E-value=33 Score=23.87 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=32.4
Q ss_pred HHHHcCCcceEEEEEecccccchhhHHHHHHHhhcCCCCCCeEEe
Q psy2405 188 IAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTI 232 (264)
Q Consensus 188 iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l~r~p~~~P~l~~ 232 (264)
-|...|+++|+.+..++..-+-.-..+.+.++++..+...-.+.+
T Consensus 39 pA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~ 83 (91)
T 1g9o_A 39 PAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVV 83 (91)
T ss_dssp HHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEE
T ss_pred HHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEE
Confidence 368889999999999999888765556677777765533333333
No 21
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=35.69 E-value=30 Score=24.25 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=30.7
Q ss_pred HHHHcCCcceEEEEEecccccchhhHHHHHHHhhcCCC
Q psy2405 188 IAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPG 225 (264)
Q Consensus 188 iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l~r~p~ 225 (264)
-|...|+++|+.+..++...+-.-..+.+.++|+..+.
T Consensus 41 pA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~ 78 (95)
T 3r68_A 41 PAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGD 78 (95)
T ss_dssp HHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTT
T ss_pred HHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 46788999999999999998887666777777877443
No 22
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=25.66 E-value=53 Score=23.35 Aligned_cols=37 Identities=32% Similarity=0.411 Sum_probs=30.1
Q ss_pred HHHHcCCcceEEEEEecccccchhhHHHHHHHhhcCC
Q psy2405 188 IAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNP 224 (264)
Q Consensus 188 iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l~r~p 224 (264)
-|...|+++|+.+..++...+....++.+.+.|++.+
T Consensus 57 pA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~ 93 (104)
T 3sfj_A 57 PAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRS 93 (104)
T ss_dssp HHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHTCTT
T ss_pred hHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 4678899999999999999997766777777777643
No 23
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=21.54 E-value=89 Score=21.33 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=29.1
Q ss_pred HHHcCCcceEEEEEecccccchhhHHHHHHHhhcCC
Q psy2405 189 AHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNP 224 (264)
Q Consensus 189 A~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l~r~p 224 (264)
|...|+++|+.+..++...+-.-..+.+.++|+..+
T Consensus 39 A~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~ 74 (87)
T 2pa1_A 39 AKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSP 74 (87)
T ss_dssp HHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCC
T ss_pred HHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 567899999999999999887654667777777655
No 24
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=20.43 E-value=44 Score=25.00 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=29.9
Q ss_pred HHHHcCCcceEEEEEecccccchhhHHHHHHHhhc
Q psy2405 188 IAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222 (264)
Q Consensus 188 iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l~r 222 (264)
-|...|+++|+.+..++.-.|....++.+.++++.
T Consensus 51 pA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~ 85 (101)
T 3qik_A 51 LAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQ 85 (101)
T ss_dssp HHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHH
T ss_pred HHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHH
Confidence 57889999999999999999876778888887776
Done!