RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2405
(264 letters)
>gnl|CDD|234984 PRK01827, thyA, thymidylate synthase; Reviewed.
Length = 264
Score = 482 bits (1243), Expect = e-175
Identities = 171/264 (64%), Positives = 214/264 (81%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
M QYL+ +R + + G KK DRTG GTLS+FG QMRF+L KGFPLLTTKK+H KSII+EL+
Sbjct: 1 MKQYLDLLRKILDEGTKKNDRTGTGTLSVFGAQMRFDLSKGFPLLTTKKVHFKSIIHELL 60
Query: 61 WFLSGSTNINFLKKNNIKIWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIK 120
WFL G TNI +L++N + IWD+WADENGDLGP+YG QWRSWPT G++IDQ+S VI+Q+K
Sbjct: 61 WFLRGDTNIAYLQENGVHIWDEWADENGDLGPVYGKQWRSWPTPDGRHIDQISKVIEQLK 120
Query: 121 TDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIAS 180
T+P+SRR+IVSAWN ++ KM LPPCH LFQFYVA+ KLSCQLYQRSAD+FLG+PFNIAS
Sbjct: 121 TNPDSRRLIVSAWNPGELDKMALPPCHALFQFYVADGKLSCQLYQRSADVFLGVPFNIAS 180
Query: 181 YSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 240
Y+LL H+IA +TGLKVG+F+ T GD H+Y NHL+QAR+QL R P LP L I KS
Sbjct: 181 YALLTHMIAQQTGLKVGEFVHTIGDAHIYSNHLEQAREQLSREPRPLPKLVINPDIKSIF 240
Query: 241 DYNFEDFQINSYNPQKSIYAPIAI 264
D+ FEDF++ Y+P +I AP+A+
Sbjct: 241 DFEFEDFELEGYDPHPAIKAPVAV 264
>gnl|CDD|213790 TIGR03284, thym_sym, thymidylate synthase. Members of this protein
family are thymidylate synthase, an enzyme that produces
dTMP from dUMP. In prokaryotes, its gene usually is
found close to that for dihydrofolate reductase, and in
some systems the two enzymes are found as a fusion
protein. This model excludes a set of related proteins
(TIGR03283) that appears to replace this family in
archaeal methanogens, where tetrahydrofolate is replaced
by tetrahydromethanopterin [Purines, pyrimidines,
nucleosides, and nucleotides, 2'-Deoxyribonucleotide
metabolism].
Length = 295
Score = 427 bits (1099), Expect = e-153
Identities = 158/295 (53%), Positives = 199/295 (67%), Gaps = 33/295 (11%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL+ +R + +G +K DRTG GT+S+FGYQMRF+L KGFPLLTTKK+ + I EL+WF
Sbjct: 1 QYLDLLRDILENGHQKGDRTGTGTISVFGYQMRFDLSKGFPLLTTKKVPFRLIASELLWF 60
Query: 63 LSGSTNINFLKKNNIKIWDQWADE---------------------------------NGD 89
L G TNI +L +N+ IWD+WA E GD
Sbjct: 61 LKGDTNIRYLLDHNVNIWDEWAFERWVKSDDYNGPDMTDFGHRAQDDPEEDDEFADKYGD 120
Query: 90 LGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHIL 149
LGP+YG QWRSW T G+ IDQ+ VI+ IKT+P+SRR+IVSAWN D+ M LPPCH L
Sbjct: 121 LGPVYGKQWRSWATPDGETIDQIKNVIEMIKTNPDSRRLIVSAWNPEDVPTMALPPCHTL 180
Query: 150 FQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLY 209
FQFYVA+ KLSCQLYQRSAD+FLG+PFNIASY+LL H+IA ETGL+VG+F+ T GD HLY
Sbjct: 181 FQFYVADGKLSCQLYQRSADVFLGVPFNIASYALLTHLIAQETGLEVGEFVHTLGDAHLY 240
Query: 210 LNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
NHL+QA+ QL R P LP L + K D+ +ED +I Y+P +I AP+A+
Sbjct: 241 SNHLEQAKLQLTREPRPLPTLKLNPDKKDIFDFEYEDIEIEGYDPHPAIKAPVAV 295
>gnl|CDD|215846 pfam00303, Thymidylat_synt, Thymidylate synthase.
Length = 262
Score = 416 bits (1071), Expect = e-149
Identities = 150/264 (56%), Positives = 196/264 (74%), Gaps = 2/264 (0%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
QYL+ +R + +G K DRTG GT S+FG Q+RF+L+KGFPLLTTKK+ KS++ EL+
Sbjct: 1 EEQYLDLLRDILENGEFKEDRTGTGTKSLFGVQLRFDLRKGFPLLTTKKVFWKSVVEELL 60
Query: 61 WFLSGSTNINFLKKNNIKIWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIK 120
WFLSGSTN+ FL + + IWD+WA E GDLGP+YG+QWR W QG +DQL+ VI+++K
Sbjct: 61 WFLSGSTNVKFLSEYGVHIWDEWASEEGDLGPVYGFQWRHWGAEQG--VDQLARVIEKLK 118
Query: 121 TDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIAS 180
+P+SRRII+SAWN +D+ KM LPPCH LFQFYV + KLSCQLYQRS D+FLG+PFNIAS
Sbjct: 119 NNPDSRRIIISAWNPADLPKMALPPCHTLFQFYVRDGKLSCQLYQRSNDMFLGVPFNIAS 178
Query: 181 YSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 240
Y+LL +IA TGL+ G+FI T GD H+Y NH+DQ ++QL R P P L I + KS
Sbjct: 179 YALLTEMIAQVTGLEPGEFIHTIGDAHIYENHVDQVKEQLSREPRPFPKLKINPEVKSID 238
Query: 241 DYNFEDFQINSYNPQKSIYAPIAI 264
D+ EDF++ Y+P I P+A+
Sbjct: 239 DFTAEDFELEGYDPHPKIKMPVAV 262
>gnl|CDD|223285 COG0207, ThyA, Thymidylate synthase [Nucleotide transport and
metabolism].
Length = 268
Score = 394 bits (1015), Expect = e-140
Identities = 160/266 (60%), Positives = 204/266 (76%), Gaps = 2/266 (0%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQK-GFPLLTTKKLHVKSIIYEL 59
M QYL+ + H+ +G + DRTG GTLS+FGYQMRF+L K FPLLTTKK+H+KSII+EL
Sbjct: 3 MKQYLDLIEHILENGTSRSDRTGTGTLSVFGYQMRFDLSKSEFPLLTTKKVHLKSIIHEL 62
Query: 60 IWFLSGSTNINFLKKNNIKIWDQWADEN-GDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQ 118
+WFL G TNI +LK+N +KIWD+WADEN GDLGP+YGYQWR W G+ IDQ+ VI+Q
Sbjct: 63 LWFLRGDTNIAYLKENGVKIWDEWADENYGDLGPVYGYQWRKWLRPDGEKIDQIDKVIEQ 122
Query: 119 IKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNI 178
+K +P+SRR IVSAWN ++ +M LPPCHILFQFYV + KLSC LYQRS D+FLG+PFNI
Sbjct: 123 LKENPDSRRAIVSAWNPGELDEMALPPCHILFQFYVRDGKLSCTLYQRSNDVFLGVPFNI 182
Query: 179 ASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKS 238
ASY+LL H++A TGL+ G+F+ T GD H+Y NH DQA++QL R P LP L I K K
Sbjct: 183 ASYALLTHMVAQVTGLEPGEFVHTIGDAHIYDNHFDQAKEQLKREPRPLPKLVINPKDKD 242
Query: 239 SLDYNFEDFQINSYNPQKSIYAPIAI 264
D+ FEDF++ Y+P +I AP+A+
Sbjct: 243 LFDFTFEDFELVGYDPHPAIKAPVAV 268
>gnl|CDD|238211 cd00351, TS_Pyrimidine_HMase, Thymidylate synthase and pyrimidine
hydroxymethylase: Thymidylate synthase (TS) and
deoxycytidylate hydroxymethylase (dCMP-HMase) are
homologs that catalyze analogous alkylation of C5 of
pyrimidine nucleotides. Both enzymes are involved in the
biosynthesis of DNA precursors and are active as
homodimers. However, they exhibit distinct pyrimidine
base specificities and differ in the details of their
catalyzed reactions. TS is biologically ubiquitous and
catalyzes the conversion of dUMP and
methylene-tetrahydrofolate (CH2THF) to dTMP and
dihydrofolate (DHF). It also acts as a regulator of its
own expression by binding and inactivating its own RNA.
Due to its key role in the de novo pathway for
thymidylate synthesis and, hence, DNA synthesis, it is
one of the most conserved enzymes across species and
phyla. TS is a well-recognized target for anticancer
chemotherapy, as well as a valuable new target against
infectious diseases. Interestingly, in several protozoa,
a single polypeptide chain codes for both, dihydrofolate
reductase (DHFR) and thymidylate synthase (TS), forming
a bifunctional enzyme (DHFR-TS), possibly through gene
fusion at a single evolutionary point. DHFR-TS is also
active as a dimer. Virus encoded dCMP-HMase catalyzes
the reversible conversion of dCMP and CH2THF to
hydroxymethyl-dCMP and THF. This family also includes
dUMP hydroxymethylase, which is encoded by several
bacteriophages that infect Bacillus subtilis, for their
own protection against the host restriction system, and
contain hydroxymethyl-dUMP instead of dTMP in their DNA.
Length = 215
Score = 334 bits (858), Expect = e-117
Identities = 122/216 (56%), Positives = 154/216 (71%), Gaps = 2/216 (0%)
Query: 3 QYLNFMRHVYNSGI-KKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIW 61
QYL+ R + G K DRTG GT S+FG Q+RF+L +GFPLLTTKK+ KS I EL+W
Sbjct: 1 QYLDLWRKILEEGYRKTDDRTGTGTRSLFGAQLRFDLSEGFPLLTTKKVPWKSAIEELLW 60
Query: 62 FLSGSTNINFLKKNNIKIWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKT 121
FL G TN LK+ + IWD+WA + GDLG YG+QWR W G+ +DQ+ VI+++K
Sbjct: 61 FLRGDTNAERLKEYGVSIWDEWASKEGDLGYTYGFQWRHWGA-PGQGVDQIEKVIEKLKN 119
Query: 122 DPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASY 181
+P+SRR I+SAWN +D+ M LPPCH L QFYV N KLS LYQRS D FLG+PFNIASY
Sbjct: 120 NPDSRRAIISAWNPADLDLMALPPCHTLIQFYVRNGKLSLTLYQRSNDAFLGVPFNIASY 179
Query: 182 SLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQAR 217
+LL +IA TGL+ G+FI T GD H+Y NHL+Q +
Sbjct: 180 ALLTEMIARVTGLEPGEFIHTIGDAHIYENHLEQVK 215
>gnl|CDD|240299 PTZ00164, PTZ00164, bifunctional dihydrofolate
reductase-thymidylate synthase; Provisional.
Length = 514
Score = 336 bits (863), Expect = e-114
Identities = 125/276 (45%), Positives = 178/276 (64%), Gaps = 20/276 (7%)
Query: 3 QYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWF 62
QYL+ + + +G K DRTGVGT+S FGYQMRF+L++ FPLLTTKK+ ++ II EL+WF
Sbjct: 233 QYLDLIADIIKNGNVKEDRTGVGTISKFGYQMRFDLRESFPLLTTKKVFLRGIIEELLWF 292
Query: 63 LSGSTNINFLKKNNIKIWD-----QWADENG-------DLGPIYGYQWRSW--------P 102
+ G TN N L ++IW+ ++ D G DLGP+YG+QWR +
Sbjct: 293 IRGETNGNLLLDKGVRIWEGNGSREFLDSRGLTHREENDLGPVYGFQWRHFGAEYKDMHD 352
Query: 103 TLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQ 162
G+ +DQL +I+ IK +P+ RR+I++AWN S + +M LPPCH+L QFYV + KLSC
Sbjct: 353 DYTGQGVDQLKNIIETIKNNPDDRRLILTAWNPSALDQMALPPCHLLSQFYVNDGKLSCM 412
Query: 163 LYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLR 222
+YQRS D+ LG+PFNIASY+LL H+IA GL+ G+F+ GD H+Y NH+D ++QL R
Sbjct: 413 MYQRSCDMGLGVPFNIASYALLTHMIAQVCGLRPGEFVHFLGDAHVYSNHVDALKEQLER 472
Query: 223 NPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSI 258
P P L + + ++ D+ ED ++ Y P I
Sbjct: 473 VPYPFPTLKLKREVENIEDFTIEDIEVIGYVPHPKI 508
>gnl|CDD|184347 PRK13821, thyA, thymidylate synthase; Provisional.
Length = 323
Score = 212 bits (541), Expect = 9e-68
Identities = 101/280 (36%), Positives = 141/280 (50%), Gaps = 48/280 (17%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
M QYL+ +R + ++G + +RTG+ T+SI G +RF+LQ+GFP +TTKKL KS I EL+
Sbjct: 1 MKQYLDLVRTILDTGTWQENRTGIRTISIPGAMLRFDLQQGFPAVTTKKLAFKSAIGELV 60
Query: 61 WFLSGSTNINFLKKNNIKIWDQWADENG------------DLGPIYGYQWRSWP------ 102
FL S + + K+WDQ A+EN DLG +YG QWR WP
Sbjct: 61 GFLRASRSAADFRALGCKVWDQNANENAQWLANPYRQGVDDLGDVYGVQWRQWPGYKVLD 120
Query: 103 ----------------------------TLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWN 134
L K IDQL + I +P SRRI+ WN
Sbjct: 121 ASADAQIADATSRGFRIVARFDEDGAPKVLLYKAIDQLRQCLDTIMNNPGSRRILFHGWN 180
Query: 135 VSDIHKMKLPPCHILFQFY--VANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHET 192
+ + ++ LP CH+L+QF V ++S LY RS D+ LG PFN+ + L+ ++ T
Sbjct: 181 PAVLDEIALPACHLLYQFLPNVETREISLCLYIRSNDVGLGTPFNLTEGAALLSLVGRLT 240
Query: 193 GLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTI 232
G F + GD H+Y N LD ++QL R P P L I
Sbjct: 241 GYTPRWFTYFIGDAHIYENQLDMLQEQLTREPYESPRLVI 280
>gnl|CDD|179181 PRK00956, thyA, thymidylate synthase; Provisional.
Length = 208
Score = 65.4 bits (160), Expect = 8e-13
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 4/125 (3%)
Query: 94 YGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFY 153
YG + R +P +DQ+ +I+++K + NSRR WN K+ PC L F
Sbjct: 84 YGERLREYP----GEVDQIDYIIEKLKENKNSRRATAVTWNPYIDTKVDEVPCLQLVDFL 139
Query: 154 VANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHL 213
+ + KL + RS D N L +A + G+++G + H+Y
Sbjct: 140 IRDGKLYLTVLFRSNDAGGAFHANAIGLIKLGEYVAEKVGVELGTYTHHSVSAHIYERDW 199
Query: 214 DQARK 218
D K
Sbjct: 200 DYLEK 204
>gnl|CDD|132326 TIGR03283, thy_syn_methano, thymidylate synthase, methanogen type.
Thymidylate synthase makes dTMP for DNA synthesis, and
is among the most widely distributed of all enzymes.
Members of this protein family are encoded within a
completed genome sequence if and only if that species is
one of the methanogenenic archaea. In these species,
tetrahydromethanopterin replaces tetrahydrofolate, The
member from Methanobacterium thermoautotrophicum was
shown to behave as a thymidylate synthase based on
similar side reactions (the exchange of a characteristic
proton with water), although the full reaction was not
reconstituted. Partial sequence data showed no
similarity to known thymidylate synthases simply because
the region sequenced was from a distinctive N-terminal
region not found in other thymidylate synthases. Members
of this protein family appear, therefore, to a novel,
tetrahydromethanopterin-dependent thymidylate synthase
[Purines, pyrimidines, nucleosides, and nucleotides,
2'-Deoxyribonucleotide metabolism].
Length = 199
Score = 56.7 bits (137), Expect = 9e-10
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 94 YGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWN-VSDIHKMKLPPCHILFQF 152
YG + R + IDQ+ +I+++ PNSRR I W+ DI K+ PC L QF
Sbjct: 82 YGNRLRRY----FG-IDQIDYIIERLNQSPNSRRAIAITWDPPQDI-KVDEVPCLQLVQF 135
Query: 153 YVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLY 209
+ +NKL + RS D+ N L +A + G++ G H+Y
Sbjct: 136 LIRDNKLYLTAFFRSNDVGGAWVANAIGLRRLQEYVAEKVGVEPGTLTTHAISAHIY 192
>gnl|CDD|188054 TIGR00477, tehB, tellurite resistance protein TehB. Part of a
tellurite-reducing operon tehA and tehB [Cellular
processes, Toxin production and resistance].
Length = 195
Score = 28.7 bits (64), Expect = 2.6
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 114 GVIKQIK--TDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKL 159
+I ++ T+P +IV+A + +D PC + F F N+L
Sbjct: 114 SIIANMQEHTNPGGYNLIVAAMDTADY------PCPLPFSFTFKENEL 155
>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Plays a minor role in aerobic beta-oxidation of fatty
acids. FadJI complex is necessary for anaerobic growth
on short-chain acids with nitrate as an electron
acceptor. Activities include: enoyl-CoA hydratase (EC
4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadJ (aka YfcX). This model
excludes the FadB of TIGR02437 equivalog model [Fatty
acid and phospholipid metabolism, Degradation].
Length = 699
Score = 29.0 bits (65), Expect = 3.1
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 103 TLQGKYIDQLSGVIKQIKTDPNSRRIIV 130
TL+ ++ DQ+S ++ Q+K D + R +++
Sbjct: 25 TLKAEFADQVSEILSQLKRDKSIRGLVL 52
>gnl|CDD|173930 cd08171, GlyDH-like2, Glycerol dehydrogenase-like. Glycerol
dehydrogenases-like. The proteins in this family have
not been characterized, but they show sequence homology
with glycerol dehydrogenase. Glycerol dehydrogenases
(GlyDH) is a key enzyme in the glycerol dissimilation
pathway. In anaerobic conditions, many microorganisms
utilize glycerol as a source of carbon through coupled
oxidative and reductive pathways. One of the pathways
involves the oxidation of glycerol to dihydroxyacetone
with the reduction of NAD+ to NADH catalyzed by glycerol
dehydrogenases. Dihydroxyacetone is then phosphorylated
by dihydroxyacetone kinase and enters the glycolytic
pathway for further degradation. The activity of GlyDH
is zinc-dependent. The zinc ion plays a role in
stabilizing an alkoxide intermediate at the active site.
Length = 345
Score = 27.6 bits (62), Expect = 6.4
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 161 CQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDC 206
C+ Y + + G A+ + + +G+++ DFIW GG+
Sbjct: 18 CEKYGKKVVVIGGKTALAAAKDKIKAALEQ-SGIEITDFIWYGGES 62
>gnl|CDD|218060 pfam04393, DUF535, Protein of unknown function (DUF535). Family
member Shigella flexneri VirK is a virulence protein
required for the expression, or correct membrane
localisation of IcsA (VirG) on the bacterial cell
surface. This family also includes Pasteurella
haemolytica lapB, which is thought to be
membrane-associated.
Length = 287
Score = 27.2 bits (61), Expect = 9.6
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 182 SLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARK 218
+ L+ + + GL + G D LYL+ K
Sbjct: 86 AELLKQLYEQEGLLLASLTKDGEDYSLYLSINAGFPK 122
>gnl|CDD|152652 pfam12217, End_beta_propel, Catalytic beta propeller domain of
bacteriophage endosialidase. This domain family is
found in bacteria and viruses, and is typically between
443 and 460 amino acids in length. This domain is the
highly conserved beta propeller of bacteriophage
endosialidase which represents the catalytically active
part of the enzymes. This core domain forms stable
SDS-resistant trimers. There is a nested beta barrel
domain in this domain (pfam12195). The endosialidase
protein complexes to form a homotrimeric molecule.
Length = 449
Score = 27.2 bits (60), Expect = 10.0
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 153 YVANNKLS-CQLYQRSADIFLGLP--FNIASYSLLIHIIAHETGLKVGDFI 200
++ NKL+ +L+ R L L A+ I + GL GDF+
Sbjct: 95 TLSKNKLTNAELWDRPMSRSLHLTGGITKAANQQYATIHIPDHGLFAGDFV 145
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.140 0.448
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,682,496
Number of extensions: 1286610
Number of successful extensions: 1109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1096
Number of HSP's successfully gapped: 20
Length of query: 264
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 169
Effective length of database: 6,723,972
Effective search space: 1136351268
Effective search space used: 1136351268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.4 bits)