RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2405
(264 letters)
>2g8o_A TS, tsase, thymidylate synthase; methyltransferase, DUMP,
antifolate, high-resolution, ternar complex, beta sheet,
alpha/beta protein; HET: CXM UMP CB3; 1.30A {Escherichia
coli} SCOP: d.117.1.1 PDB: 1aob_A* 1f4c_A* 1f4e_A*
1f4f_A* 1jtq_A* 1jtu_A* 1jut_A* 1kce_A* 1kzi_A* 1tls_A*
1tsn_A* 1f4b_A* 2bbq_A* 2ftq_A* 2a9w_A* 2kce_A* 3b9h_A*
3bhl_A* 3bhr_A* 3tms_A ...
Length = 264
Score = 513 bits (1324), Expect = 0.0
Identities = 170/264 (64%), Positives = 209/264 (79%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
M QYL M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+
Sbjct: 1 MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELL 60
Query: 61 WFLSGSTNINFLKKNNIKIWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIK 120
WFL G TNI +L +NN+ IWD+WADENGDLGP+YG QWR+WPT G++IDQ++ V+ Q+K
Sbjct: 61 WFLQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLK 120
Query: 121 TDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIAS 180
DP+SRRIIVSAWNV ++ KM L PCH FQFYVA+ KLSCQLYQRS D+FLGLPFNIAS
Sbjct: 121 NDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIAS 180
Query: 181 YSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 240
Y+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I KP+S
Sbjct: 181 YALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIF 240
Query: 241 DYNFEDFQINSYNPQKSIYAPIAI 264
DY FEDF+I Y+P I AP+AI
Sbjct: 241 DYRFEDFEIEGYDPHPGIKAPVAI 264
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural
center for infectious DISE brucellosis, orchitis,
epididymitis, mastitis; 2.20A {Brucella melitensis}
Length = 360
Score = 516 bits (1331), Expect = 0.0
Identities = 159/264 (60%), Positives = 205/264 (77%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
M YL+ ++HV + G+ + DRTG GT S+FGYQMRF+L++GFP+LTTKKLH++SII+EL+
Sbjct: 97 MRTYLDLLQHVLDHGVDRDDRTGTGTRSVFGYQMRFDLEEGFPVLTTKKLHLRSIIHELL 156
Query: 61 WFLSGSTNINFLKKNNIKIWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIK 120
WFL G TNI +LK+N + IWD+WADENGDLGP+YGYQWRSWP G++IDQ++ ++K +
Sbjct: 157 WFLKGDTNIAYLKENGVTIWDEWADENGDLGPVYGYQWRSWPAPDGRHIDQIANLLKMLH 216
Query: 121 TDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIAS 180
T+P SRR+IVSAWN + + +M LPPCH LFQFYVAN +LSCQLYQRSADIFLG+PFNIAS
Sbjct: 217 TNPQSRRLIVSAWNPALVDEMALPPCHCLFQFYVANGRLSCQLYQRSADIFLGVPFNIAS 276
Query: 181 YSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 240
Y+LL +IA TGLK G+FI T GD H+Y NH +QAR QL R P LP + I K
Sbjct: 277 YALLTMMIAQVTGLKPGEFIHTLGDAHIYSNHFEQARLQLTRTPKKLPVMHINPDVKDLF 336
Query: 241 DYNFEDFQINSYNPQKSIYAPIAI 264
+ FEDF+++ Y +I APIA+
Sbjct: 337 AFRFEDFRLDGYEADPTIKAPIAV 360
>3qj7_A TS, tsase, thymidylate synthase; thymidilate synthase, structural
genomics, TB structural GEN consortium, TBSGC,
transferase; HET: UMP SPM; 2.50A {Mycobacterium
tuberculosis}
Length = 264
Score = 508 bits (1310), Expect = 0.0
Identities = 150/264 (56%), Positives = 197/264 (74%), Gaps = 1/264 (0%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
M Y + +R V +G K DRTG GT S+FG QMR++L GFPLLTTKK+H KS+ YEL+
Sbjct: 2 MTPYEDLLRFVLETGTPKSDRTGTGTRSLFGQQMRYDLSAGFPLLTTKKVHFKSVAYELL 61
Query: 61 WFLSGSTNINFLKKNNIKIWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIK 120
WFL G +NI +L ++ + IWD+WA + G+LGPIYG QWRSWP G++IDQ+S + ++
Sbjct: 62 WFLRGDSNIGWLHEHGVTIWDEWASDTGELGPIYGVQWRSWPAPSGEHIDQISAALDLLR 121
Query: 121 TDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIAS 180
TDP+SRRIIVSAWNV +I +M LPPCH FQFYVA+ +LSCQLYQRSAD+FLG+PFNIAS
Sbjct: 122 TDPDSRRIIVSAWNVGEIERMALPPCHAFFQFYVADGRLSCQLYQRSADLFLGVPFNIAS 181
Query: 181 YSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 240
Y+LL H++A + GL VG+FIWTGGDCH+Y NH++Q R QL R P P L + S
Sbjct: 182 YALLTHMMAAQAGLSVGEFIWTGGDCHIYDNHVEQVRLQLSREPRPYPKLLLA-DRDSIF 240
Query: 241 DYNFEDFQINSYNPQKSIYAPIAI 264
+Y +ED + +Y+P +I AP+A+
Sbjct: 241 EYTYEDIVVKNYDPHPAIKAPVAV 264
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase,
nucleotide biosynthesis; 1.56A {Homo sapiens} PDB:
3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A
3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 2rd8_A* 2rda_A
3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* 1juj_A* 3egy_X* ...
Length = 295
Score = 497 bits (1282), Expect = 0.0
Identities = 141/284 (49%), Positives = 182/284 (64%), Gaps = 20/284 (7%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
QYL ++H+ G++K DRTG GTLS+FG Q R++L+ FPLLTTK++ K ++ EL+
Sbjct: 12 ELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELL 71
Query: 61 WFLSGSTNINFLKKNNIKIWDQWAD------------ENGDLGPIYGYQWRSWPT----- 103
WF+ GSTN L +KIWD E GDLGP+YG+QWR +
Sbjct: 72 WFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDM 131
Query: 104 ---LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLS 160
G+ +DQL VI IKT+P+ RRII+ AWN D+ M LPPCH L QFYV N++LS
Sbjct: 132 ESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSELS 191
Query: 161 CQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQL 220
CQLYQRS D+ LG+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL
Sbjct: 192 CQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQL 251
Query: 221 LRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
R P P L IL K + D+ EDFQI YNP +I +A+
Sbjct: 252 QREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 295
>1hw4_A TS, thymidylate synthase; methyltransferase, transferase; HET: CME;
2.06A {Homo sapiens} SCOP: d.117.1.1 PDB: 3n5e_A 3n5g_A*
Length = 355
Score = 496 bits (1279), Expect = e-179
Identities = 141/284 (49%), Positives = 182/284 (64%), Gaps = 20/284 (7%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
QYL ++H+ G++K DRTG GTLS+FG Q R++L+ FPLLTTK++ K ++ EL+
Sbjct: 72 ELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELL 131
Query: 61 WFLSGSTNINFLKKNNIKIWDQWAD------------ENGDLGPIYGYQWRSWPT----- 103
WF+ GSTN L +KIWD E GDLGP+YG+QWR +
Sbjct: 132 WFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDM 191
Query: 104 ---LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLS 160
G+ +DQL VI IKT+P+ RRII+ AWN D+ M LPPCH L QFYV N++LS
Sbjct: 192 ESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSELS 251
Query: 161 CQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQL 220
CQLYQRS D+ LG+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL
Sbjct: 252 CQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQL 311
Query: 221 LRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
R P P L IL K + D+ EDFQI YNP +I +A+
Sbjct: 312 QREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 355
>1j3k_C Bifunctional dihydrofolate reductase-thymidylate synthase;
oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A
{Plasmodium falciparum} SCOP: d.117.1.1 PDB: 1j3i_C*
1j3j_C* 3dg8_C* 3dga_C*
Length = 328
Score = 491 bits (1266), Expect = e-178
Identities = 129/283 (45%), Positives = 170/283 (60%), Gaps = 20/283 (7%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
+QYLN + + +G K+ DRTGVG LS FGY M+F+L + FPLLTTKKL ++ II EL+
Sbjct: 45 EYQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELL 104
Query: 61 WFLSGSTNINFLKKNNIKIWDQWAD------------ENGDLGPIYGYQWRSW------- 101
WF+ G TN N L N++IW+ E DLGPIYG+QWR +
Sbjct: 105 WFIRGETNGNTLLNKNVRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNM 164
Query: 102 -PTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLS 160
+ K +DQL +I IK DP SRRI++ AWNV D+ +M LPPCHIL QFYV + KLS
Sbjct: 165 YDNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKLS 224
Query: 161 CQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQL 220
C +YQRS D+ LG+PFNIASYS+ H+IA L+ FI G+ H+Y NH+D + QL
Sbjct: 225 CIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQL 284
Query: 221 LRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIA 263
R P P L + K+ D+ DF I +Y + I +A
Sbjct: 285 NRIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMA 327
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode,
methyltransferase, nucleotide biosynt transferase,
structural genomics; 2.20A {Encephalitozoon cuniculi}
Length = 294
Score = 485 bits (1251), Expect = e-176
Identities = 125/285 (43%), Positives = 186/285 (65%), Gaps = 22/285 (7%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKG-FPLLTTKKLHVKSIIYEL 59
HQYL+ ++H+ +G +++DRTG GTLS+FG MRF+L+ FPLLTT+++ + ++ EL
Sbjct: 9 EHQYLDLVKHILENGARRMDRTGTGTLSVFGATMRFSLEDNTFPLLTTRRVFYRGVVEEL 68
Query: 60 IWFLSGSTNINFLKKNNIKIWDQWA-----------DENGDLGPIYGYQWR--------S 100
++FL G T+ L+K ++IW++ E GDLGPIYG+QWR S
Sbjct: 69 LFFLRGETDSKVLEKKGVRIWEKNGAKQFLQSVGIDREEGDLGPIYGFQWRHFGARYETS 128
Query: 101 WPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLS 160
+ +GK +DQ++ I I+ +P SRRI+VSAWN +D+ M LPPCH+LFQF V + KLS
Sbjct: 129 ASSYEGKGVDQIASAIAAIRANPASRRIVVSAWNPTDLGSMALPPCHVLFQFNVTDGKLS 188
Query: 161 CQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQL 220
C +YQRS D+ LG+PFNIASYSLL ++AH TGL+ G+F+ GD H+YL+H+D R+Q+
Sbjct: 189 CAMYQRSGDMGLGVPFNIASYSLLTILVAHLTGLQPGEFVHFLGDAHVYLDHVDSLRQQI 248
Query: 221 LRNPGSLPNLTILCKP--KSSLDYNFEDFQINSYNPQKSIYAPIA 263
R P + P L + K + +EDF++ Y+P +I ++
Sbjct: 249 QRPPRAFPKLFVSPKGPRTEPEHFQYEDFELVGYDPHPAIKMNMS 293
>1bkp_A Thymidylate synthase A; methyltransferase, DTMP synthase; 1.70A
{Bacillus subtilis} SCOP: d.117.1.1 PDB: 1bko_A 1bsf_A
1bsp_A 1b02_A*
Length = 278
Score = 479 bits (1235), Expect = e-174
Identities = 95/276 (34%), Positives = 151/276 (54%), Gaps = 13/276 (4%)
Query: 1 MHQYLNFMRHVYNSGIKKI----------DRTGVGTLSIFGYQMRFNLQKGFPLLTTKKL 50
QY + ++ + N+GI D T TLS+ QMRF+ P+LTTKK+
Sbjct: 4 DKQYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFDNS-EVPILTTKKV 62
Query: 51 HVKSIIYELIWFLSGSTN-INFLKKNNIKIWDQWADENGDLGPIYGYQW-RSWPTLQGKY 108
K+ I EL+W +N +N L + IWDQW E+G +G YG+Q + +L G+
Sbjct: 63 AWKTAIKELLWIWQLKSNDVNDLNMMGVHIWDQWKQEDGTIGHAYGFQLGKKNRSLNGEK 122
Query: 109 IDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSA 168
+DQ+ ++ Q+K +P+SRR I WN ++ M L PC Q+YV + KL ++ RS
Sbjct: 123 VDQVDYLLHQLKNNPSSRRHITMLWNPDELDAMALTPCVYETQWYVKHGKLHLEVRARSN 182
Query: 169 DIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLP 228
D+ LG PFN+ Y++L +IA TG ++G++I+ GDCH+Y H+D + Q+ R P
Sbjct: 183 DMALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCHVYTRHIDNLKIQMEREQFEAP 242
Query: 229 NLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
L I + K D+ +DF++ +Y + +A+
Sbjct: 243 ELWINPEVKDFYDFTIDDFKLINYKHGDKLLFEVAV 278
>1tis_A Thymidylate synthase; transferase(methyltransferase); 2.70A
{Enterobacteria phage T4} SCOP: d.117.1.1
Length = 286
Score = 478 bits (1232), Expect = e-173
Identities = 124/291 (42%), Positives = 174/291 (59%), Gaps = 32/291 (10%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
M QY + ++ ++ +G + DRTG GT+++FG ++R++L KGFP +TTKKL K+ I ELI
Sbjct: 1 MKQYQDLIKDIFENGYETDDRTGTGTIALFGSKLRWDLTKGFPAVTTKKLAWKACIAELI 60
Query: 61 WFLSGSTNINFLKK-------NNIKIWDQWAD--------ENGDLGPIYGYQWRSWPTLQ 105
WFLSGSTN+N L+ +WD+ + +G+LGPIYG QWR +
Sbjct: 61 WFLSGSTNVNDLRLIQHDSLIQGKTVWDENYENQAKDLGYHSGELGPIYGKQWRDFGG-- 118
Query: 106 GKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQ 165
+DQ+ VI +IK PN RR IVSAWN +++ M LPPCH+ +QF V N L Q YQ
Sbjct: 119 ---VDQIIEVIDRIKKLPNDRRQIVSAWNPAELKYMALPPCHMFYQFNVRNGYLDLQWYQ 175
Query: 166 RSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPG 225
RS D+FLGLPFNIASY+ L+HI+A L GD I++GG+ H+Y+NH++Q ++ L R P
Sbjct: 176 RSVDVFLGLPFNIASYATLVHIVAKMCNLIPGDLIFSGGNTHIYMNHVEQCKEILRREPK 235
Query: 226 SLPNLTILCKP------------KSSLDYNFEDFQINSYNPQKSIYAPIAI 264
L L I P K L +DF +N+Y I +A+
Sbjct: 236 ELCELVISGLPYKFRYLSTKEQLKYVLKLRPKDFVLNNYVSHPPIKGKMAV 286
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine,
antifolate resistance, oxidoreductase, transferase; HET:
CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A*
3qgt_A*
Length = 608
Score = 490 bits (1262), Expect = e-173
Identities = 129/283 (45%), Positives = 170/283 (60%), Gaps = 20/283 (7%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
+QYLN + + +G K+ DRTGVG LS FGY M+F+L + FPLLTTKKL ++ II EL+
Sbjct: 325 EYQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELL 384
Query: 61 WFLSGSTNINFLKKNNIKIWDQWAD------------ENGDLGPIYGYQWRSW------- 101
WF+ G TN N L N++IW+ E DLGPIYG+QWR +
Sbjct: 385 WFIRGETNGNTLLNKNVRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNM 444
Query: 102 -PTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLS 160
+ K +DQL +I IK DP SRRI++ AWNV D+ +M LPPCHIL QFYV + KLS
Sbjct: 445 YDNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKLS 504
Query: 161 CQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQL 220
C +YQRS D+ LG+PFNIASYS+ H+IA L+ FI G+ H+Y NH+D + QL
Sbjct: 505 CIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQL 564
Query: 221 LRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIA 263
R P P L + K+ D+ DF I +Y + I +A
Sbjct: 565 NRIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMA 607
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS
antifolate complex, methyltransfe multifunctional
enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB:
3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A*
3kjs_A*
Length = 521
Score = 487 bits (1254), Expect = e-173
Identities = 119/285 (41%), Positives = 168/285 (58%), Gaps = 21/285 (7%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKG-FPLLTTKKLHVKSIIYEL 59
QYL+ + + G K DRTGVGTLSIFG QMRF+L+ PLLTTK++ + + EL
Sbjct: 237 EEQYLSLVDRIIREGNVKHDRTGVGTLSIFGAQMRFSLRNNRLPLLTTKRVFWRGVCEEL 296
Query: 60 IWFLSGSTNINFLKKNNIKIWDQWAD------------ENGDLGPIYGYQWRSWPT---- 103
+WFL G T L + IWD E DLGP+YG+QWR +
Sbjct: 297 LWFLRGETYAKKLSDKGVHIWDDNGSRAFLDSRGLTEYEEMDLGPVYGFQWRHFGAAYTH 356
Query: 104 ----LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKL 159
G+ +DQ+ +++ +KT+P+ RR++ +AWN S + +M LPPCH+L QFYV+N +L
Sbjct: 357 HDANYDGQGVDQIKAIVETLKTNPDDRRMLFTAWNPSALPRMALPPCHLLAQFYVSNGEL 416
Query: 160 SCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQ 219
SC LYQRS D+ LG+PFNIASY+LL +IA TGL+ G+ + T GD H+Y NH++ +Q
Sbjct: 417 SCMLYQRSCDMGLGVPFNIASYALLTILIAKATGLRPGELVHTLGDAHVYSNHVEPCNEQ 476
Query: 220 LLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
L R P + P L + + DY D ++ Y P I +A+
Sbjct: 477 LKRVPRAFPYLVFRREREFLEDYEEGDMEVIDYAPYPPISMKMAV 521
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover,
non-active site, oxidoreductase; HET: UMP CB3 MTX NDP;
2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A*
3dl5_A* 3dl6_A* 2oip_A*
Length = 521
Score = 484 bits (1248), Expect = e-172
Identities = 119/285 (41%), Positives = 168/285 (58%), Gaps = 21/285 (7%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
QYL+ + V +G + +RTG+ T SIFG MRF++++ FPLLTTKK+ ++SI ELI
Sbjct: 237 EFQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRSIFEELI 296
Query: 61 WFLSGSTNINFLKKNNIKIWDQWAD------------ENGDLGPIYGYQWRSWPT----- 103
WF+ G TN N L + + IW E DLGPIYG+QWR +
Sbjct: 297 WFIKGDTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTM 356
Query: 104 ---LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVAN-NKL 159
G +DQL+ +I+ +K +P RR I++AWN S + +M LPPCH+L Q+YV N N L
Sbjct: 357 HDDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNCL 416
Query: 160 SCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQ 219
SC LYQRS D+ LG PFNIASY++L ++A G + G+ GD H+Y NHL Q ++Q
Sbjct: 417 SCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQ 476
Query: 220 LLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
L R P P L K ++ D+ +ED ++ Y P +I +A+
Sbjct: 477 LSRTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 521
>1f28_A Thymidylate synthase; beta-sheet, protein-inhibitor complex,
transferase; HET: UMP F89; 1.90A {Pneumocystis carinii}
SCOP: d.117.1.1 PDB: 1ci7_A*
Length = 297
Score = 475 bits (1224), Expect = e-172
Identities = 126/292 (43%), Positives = 185/292 (63%), Gaps = 28/292 (9%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFG-YQMRFNLQ-KGFPLLTTKKLHVKSIIYE 58
QYLN ++++ N G + DRTG GTLS+F ++F+L+ K FPLLTTK++ ++ +I E
Sbjct: 6 EQQYLNLVQYIINHGEDRPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRGVIEE 65
Query: 59 LIWFLSGSTNINFLKKNNIKIWD-----QWAD-------ENGDLGPIYGYQWRSWPT--- 103
L+WF+ G T+ L++ NI IWD ++ D + GDLGPIYG+QWR +
Sbjct: 66 LLWFIRGETDSLKLREKNIHIWDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFGAEYI 125
Query: 104 -----LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVA--- 155
G+ +DQL+ +I++I+T P RR+I+SAWN +D+ KM LPPCH+ QFYV
Sbjct: 126 DCKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWNPADLEKMALPPCHMFCQFYVHIPS 185
Query: 156 ---NNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNH 212
+LSCQLYQRS D+ LG+PFNIASY+LL +IAH L GDFI GDCH+Y +H
Sbjct: 186 NNHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHIYKDH 245
Query: 213 LDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
++ ++QL R+P P L++ D+ +DF I +Y+P ++I ++I
Sbjct: 246 IEALQQQLTRSPRPFPTLSLNRSITDIEDFTLDDFNIQNYHPYETIKMKMSI 297
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A
{Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Length = 515
Score = 483 bits (1246), Expect = e-172
Identities = 127/283 (44%), Positives = 178/283 (62%), Gaps = 20/283 (7%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
QYL+ + V + G+ K +RTG S FGYQMRF+L + FPLLTTKK+ ++SII EL+
Sbjct: 232 EFQYLDILADVLSHGVLKPNRTGTDAYSKFGYQMRFDLSRSFPLLTTKKVALRSIIEELL 291
Query: 61 WFLSGSTNINFLKKNNIKIWD-----QWADENG-------DLGPIYGYQWRSWPT----- 103
WF+ GSTN N L N++IW+ + D+NG DLGPIYG+QWR +
Sbjct: 292 WFIKGSTNGNDLLAKNVRIWELNGRRDFLDKNGFTDREEHDLGPIYGFQWRHFGAEYLDM 351
Query: 104 ---LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLS 160
GK IDQL+ +I +IKT+PN RR+IV +WNVSD+ KM LPPCH FQFYV++NKLS
Sbjct: 352 HADYTGKGIDQLAEIINRIKTNPNDRRLIVCSWNVSDLKKMALPPCHCFFQFYVSDNKLS 411
Query: 161 CQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQL 220
C ++QRS D+ LG+PFNIASYS+L ++A GL +G+F+ D H+Y++H+D Q+
Sbjct: 412 CMMHQRSCDLGLGVPFNIASYSILTAMVAQVCGLGLGEFVHNLADAHIYVDHVDAVTTQI 471
Query: 221 LRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIA 263
R P P L + ++ D+ +D + Y I ++
Sbjct: 472 ARIPHPFPRLRLNPDIRNIEDFTIDDIVVEDYVSHPPIPMAMS 514
>4dq1_A TS, tsase, thymidylate synthase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG; HET: UMP;
2.71A {Staphylococcus aureus}
Length = 321
Score = 473 bits (1218), Expect = e-170
Identities = 142/315 (45%), Positives = 179/315 (56%), Gaps = 53/315 (16%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
Y + V G + DRT GT+S FG+Q+RF+L KGFPLLTTKK+ K + EL+
Sbjct: 9 DAAYHSLCEEVLEIGNTRNDRTNTGTISKFGHQLRFDLSKGFPLLTTKKVSFKLVATELL 68
Query: 61 WFLSGSTNINFLKKNNIKIW---------------------------------------- 80
WF+ G TNI +L K N IW
Sbjct: 69 WFIKGDTNIQYLLKYNNNIWNEWAFENYIKSDEYNGPDMTDFGHRALSDPEFNEQYKEQM 128
Query: 81 ----------DQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIV 130
D +A + GDLG +YG QWR W G + DQL VI+QIK +P+SRR IV
Sbjct: 129 KQFKQRILEDDTFAKQFGDLGNVYGKQWRDWVDKDGNHFDQLKTVIEQIKHNPDSRRHIV 188
Query: 131 SAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAH 190
SAWN ++I M LPPCH +FQFYV + KLSCQLYQRSADIFLG+PFNIASY+LL H+IA
Sbjct: 189 SAWNPTEIDTMALPPCHTMFQFYVQDGKLSCQLYQRSADIFLGVPFNIASYALLTHLIAK 248
Query: 191 ETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL-DYNFEDFQI 249
E GL+VG+F+ T GD H+Y NH+D + QL R + P L I S+ D N+ED +I
Sbjct: 249 ECGLEVGEFVHTFGDAHIYSNHIDAIQTQLARESFNPPTLKI--NSDKSIFDINYEDLEI 306
Query: 250 NSYNPQKSIYAPIAI 264
Y +I APIA+
Sbjct: 307 VDYESHPAIKAPIAV 321
>2aaz_A TS, tsase, thymidylate synthase; methyl transferase, nucleotide
biosynthesis, transferase; HET: UMP CB3; 2.08A
{Filobasidiella neoformans}
Length = 317
Score = 470 bits (1212), Expect = e-170
Identities = 115/297 (38%), Positives = 160/297 (53%), Gaps = 34/297 (11%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGY-QMRFNLQKG-FPLLTTKKLHVKSIIYE 58
+QYL+ +R + N G + DRTG GT+++F RF+L PLLTTK++ ++ +I E
Sbjct: 20 EYQYLDLIRRIINVGEVRPDRTGTGTVALFAPPSFRFSLADNTLPLLTTKRVFLRGVIAE 79
Query: 59 LIWFLSGSTNINFLKKNNIKIWDQWAD------------ENGDLGPIYGYQWRSWPT--- 103
L+WF+SG T+ L + IWD GDLGP+YG+QWR +
Sbjct: 80 LLWFVSGCTDAKMLSSQGVGIWDGNGSKEFLEKVGLGHRREGDLGPVYGFQWRHFGAEYT 139
Query: 104 -----LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVA--- 155
+GK +DQL VI IK +P RRII+SAWN D+ M LPPCH+ QF+V+
Sbjct: 140 DADGDYKGKGVDQLQRVIDTIKNNPTDRRIILSAWNPKDLPLMALPPCHMFCQFFVSLPP 199
Query: 156 ------NNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLY 209
KLSC +YQRS D+ LG+PFNIASY+LL H+IA T + +FI GD H+Y
Sbjct: 200 ADSPGSKPKLSCLMYQRSCDLGLGVPFNIASYALLTHMIALITDTEPHEFILQMGDAHVY 259
Query: 210 LNHLDQARKQLLRNPGSLPNLTILCKP---KSSLDYNFEDFQINSYNPQKSIYAPIA 263
+H++ + QL R P P L + EDF + Y P I ++
Sbjct: 260 RDHVEPLKTQLEREPRDFPKLKWARSKEEIGDIDGFKVEDFVVEGYKPWGKIDMKMS 316
>3ik0_A TS, tsase, thymidylate synthase; transferase, nucleotide synthase,
methyltransferase, nucleot biosynthesis; HET: 7C1 UMP;
2.10A {Lactobacillus casei} PDB: 1lcb_A* 1lce_A* 1lca_A*
1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A*
3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A*
1tsz_A 1tdb_A* 1tda_A* ...
Length = 316
Score = 469 bits (1210), Expect = e-169
Identities = 146/314 (46%), Positives = 186/314 (59%), Gaps = 50/314 (15%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
YL+ + V + G K DRT GT SIFG+QMRF+L KGFPLLTTKK+ I EL+
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELL 62
Query: 61 WFLSGSTNINFLKKNN-------------------------------------------- 76
WFL G TNI FL ++
Sbjct: 63 WFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEM 122
Query: 77 ------IKIWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIV 130
+ D +A + GDLG +YG QWR+W T +G IDQL VI+QIKT P SRR+IV
Sbjct: 123 AKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIV 182
Query: 131 SAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAH 190
SAWN D+ M LPPCH L+QFYV + KLS QLYQRSADIFLG+PFNIASY+LL H++AH
Sbjct: 183 SAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAH 242
Query: 191 ETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQIN 250
E GL+VG+FI T GD HLY+NHLDQ ++QL R P P L + D++ +D ++
Sbjct: 243 ECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLL 302
Query: 251 SYNPQKSIYAPIAI 264
+Y+P +I AP+A+
Sbjct: 303 NYDPYPAIKAPVAV 316
>3v8h_A TS, tsase, thymidylate synthase; ssgcid, structural genomics,
seattle S genomics center for infectious disease,
transferase; HET: CIT; 1.65A {Burkholderia
thailandensis}
Length = 327
Score = 441 bits (1137), Expect = e-158
Identities = 105/323 (32%), Positives = 153/323 (47%), Gaps = 59/323 (18%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
M QYL+ +R + ++G + +RTG+ T+ I G +RF+LQ+GFP +TTKKL KS I EL+
Sbjct: 5 MKQYLDLVRTILDTGTWQSNRTGIRTIGIPGAMLRFDLQQGFPAVTTKKLAFKSAIGELV 64
Query: 61 WFLSGSTNINFLKKNNIKIWDQWADEN------------GDLGPIYGYQWRSWP------ 102
FL + + + K+WD A+EN DLG +YG QWR WP
Sbjct: 65 GFLRATRSAAEFRALGCKVWDANANENAQWLANPYRRGADDLGDVYGVQWRRWPGYKVLD 124
Query: 103 ----------------------------TLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWN 134
L K IDQL + I DP+SRRI+ WN
Sbjct: 125 AHADAQIADATSRGFRIVARFEEGGADKVLLHKAIDQLRDCLDTIVRDPSSRRILFHGWN 184
Query: 135 VSDIHKMKLPPCHILFQFY--VANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHET 192
+ + ++ LP CH+L+QF V ++S LY RS D+ LG PFN+A + L+ ++ T
Sbjct: 185 PAVLDEIALPACHLLYQFLPNVERREISLCLYIRSNDVGLGTPFNLAEGAALLTLVGRLT 244
Query: 193 GLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL-----------D 241
G F + GD H+Y N LD ++QL R P P L + +
Sbjct: 245 GYSPRWFTYFIGDAHIYENQLDMLKQQLEREPFESPRLELAERVPDYAKTGKYEPQWLER 304
Query: 242 YNFEDFQINSYNPQKSIYAPIAI 264
DF + Y + + AP+A+
Sbjct: 305 VEPSDFTLVGYRHHEPLSAPMAV 327
>1b5e_A Protein (deoxycytidylate hydroxymethylase); DNTP synthesizing
complex, transferase; HET: DCM; 1.60A {Enterobacteria
phage T4} SCOP: d.117.1.1 PDB: 1b49_A* 1b5d_A*
Length = 246
Score = 406 bits (1046), Expect = e-145
Identities = 49/240 (20%), Positives = 83/240 (34%), Gaps = 22/240 (9%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
+ + + +D+TGV T+ I G + F L + I EL
Sbjct: 8 VEEIRLHLGLALKEKDFVVDKTGVKTIEIIGASFVADEPFIFGALNDEY-----IQRELE 62
Query: 61 WFLSGSTNINFLKKNNIKIWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIK 120
W+ S S + + KIW Q A G++ YG W W Q + ++
Sbjct: 63 WYKSKSLFVKDIPGETPKIWQQVASSKGEINSNYG--WAIWS---EDNYAQYDMCLAELG 117
Query: 121 TDPNSRRIIVSAWNVS-----DIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLP 175
+P+SRR I+ S + M C Q+ + + K++ + RS D+ G
Sbjct: 118 QNPDSRRGIMIYTRPSMQFDYNKDGMSDFMCTNTVQYLIRDKKINAVVNMRSNDVVFGFR 177
Query: 176 FNIASYSLLIHIIAHE-------TGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLP 228
+ A ++ + + K G IW G H+Y H +
Sbjct: 178 NDYAWQKYVLDKLVSDLNAGDSTRQYKAGSIIWNVGSLHVYSRHFYLVDHWWKTGETHIS 237
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.028
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 9/32 (28%)
Query: 215 QARKQL-----LRNPGSLPNLTILCKPKSSLD 241
QA K+L L S P L I K++++
Sbjct: 20 QALKKLQASLKLYADDSAPALAI----KATME 47
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 30.3 bits (68), Expect = 0.26
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 189 AHETGLKVGDFIWT--GGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKS 238
A GL++GDF+ G + + H Q ++R G+ + ++ +
Sbjct: 78 AWRAGLRMGDFLIEVNGQNVV-KVGH-RQVV-NMIRQGGNTLMVKVVMVTRH 126
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 29.4 bits (66), Expect = 0.49
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 189 AHETGLKVGDFIWT--GGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 233
A GL++GDF+ G + + H Q ++R G+ + ++
Sbjct: 58 AWRAGLRMGDFLIEVNGQNVV-KVGH-RQV-VNMIRQGGNTLMVKVV 101
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.54
Identities = 35/228 (15%), Positives = 64/228 (28%), Gaps = 103/228 (45%)
Query: 40 KGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIWDQWADENGDLGPIYGYQWR 99
P SII E I ++ + WD W N
Sbjct: 324 TTNPRRL-------SIIAESI-------------RDGLATWDNWKHVN------------ 351
Query: 100 SWPTLQGKYIDQLSGVIKQ-IKT-DPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANN 157
D+L+ +I+ + +P R
Sbjct: 352 ---------CDKLTTIIESSLNVLEPAEYR------------------------------ 372
Query: 158 KLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGG---DCHLYLNHLD 214
+++ R + +F P + HI + IW D + +N L
Sbjct: 373 ----KMFDRLS-VF---PPSA-------HIPT-----ILLSLIWFDVIKSDVMVVVNKL- 411
Query: 215 QARKQLL-RNPG----SLPNLTILCKPKSSLDYNFEDFQINSYNPQKS 257
+ L+ + P S+P++ + K K +Y ++ YN K+
Sbjct: 412 -HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Score = 30.6 bits (68), Expect = 0.66
Identities = 38/288 (13%), Positives = 74/288 (25%), Gaps = 98/288 (34%)
Query: 43 PLLTTKKL-------HVKSIIYELIW-FLSGSTNI------NFLKKNNIKIWDQWADENG 88
+L+ +++ S L W LS + L+ N + E
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 89 DLGPI---YGYQ----WRSWPTLQGKY-------IDQLSGVIKQIKTDPNSRRIIV---- 130
+ Y Q + KY +L + +++ N +++
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFA-KYNVSRLQPYLKLRQALLELRPAKN---VLIDGVL 159
Query: 131 -------SAWNVSD----------IHKMKLPPCH-------ILFQFYVANNKLSCQLYQR 166
+ I + L C+ +L + +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 167 SADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWT-------GGDC------------- 206
S++I L + A L+ +E L V + C
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 207 --------HLYLNHL------DQARKQLLR----NPGSLPNLTILCKP 236
H+ L+H D+ + LL+ P LP + P
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 29.0 bits (65), Expect = 0.69
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 10/38 (26%)
Query: 173 GLPFNIAS---YSLLIHI-------IAHETGLKVGDFI 200
GL +I+S I I ++ E GL++GD I
Sbjct: 28 GLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQI 65
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 29.4 bits (66), Expect = 0.86
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 189 AHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKP 236
A GL+ GD + + D+A K L + G +TI +P
Sbjct: 40 ASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRP 87
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.95
Identities = 27/138 (19%), Positives = 42/138 (30%), Gaps = 43/138 (31%)
Query: 136 SDIHKM--KLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLI-------- 185
+DIH + KL + + K + Y A I PF+ S S L
Sbjct: 99 NDIHALAAKLLQEN---DTTLVKTKELIKNYIT-ARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 186 HIIA-------HETGLK------------VGDFIWTGGDC--HLYLNHLDQAR------- 217
++A + + VGD I + L LD +
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 218 -KQLLRNPGSLPNLTILC 234
+ L NP + P+ L
Sbjct: 215 ILEWLENPSNTPDKDYLL 232
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 28.1 bits (63), Expect = 0.98
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 189 AHETGLKVGDFIWT--GGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSS 239
A E GL+ GD I G L H +LL G+ +L +
Sbjct: 47 AQEAGLRAGDLITHINGESVL-GLVH-MDVV-ELLLKSGNKISLRTTALENTE 96
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 27.7 bits (62), Expect = 1.4
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 189 AHETGLKVGDFIWT--GGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKP 236
A + G+K GD I G +HL+ +L+++ G+ LT+L
Sbjct: 42 AMKAGVKEGDRIIKVNGTMVT-NSSHLEVV--KLIKS-GAYVALTLLGSS 87
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 27.3 bits (61), Expect = 2.0
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 189 AHETGLKVGDFIWT--GGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 233
A G++ GD I G + H Q L+R LT+L
Sbjct: 56 ADRAGVRKGDRILEVNGVNVE-GATH-KQVV-DLIRAGEKELILTVL 99
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 27.3 bits (61), Expect = 2.1
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 189 AHETGLKVGDFIWT--GGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 240
A GLK D + G L+H +++R G L +L K S+
Sbjct: 43 AEAAGLKNNDLVVAVNGKSVE-ALDHDGVV--EMIRKGGDQTTLLVLDKEAESI 93
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP;
1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A
1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Length = 275
Score = 28.5 bits (64), Expect = 2.1
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 110 DQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHI 148
D + ++ R I + + ++ HK + P
Sbjct: 232 DNIDDYLEGKNVPQQVARTIENWYLKTE-HKRRPPITVF 269
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 26.9 bits (60), Expect = 2.4
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 189 AHETGLKVGDFIWT--GGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 240
A +GL+ D + G + L H + ++ L + P + L
Sbjct: 41 AARSGLRAQDRLIEVNGQNVE-GLRHAEVV--ASIKAREDEARLLV-VGPSTRL 90
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 27.7 bits (62), Expect = 2.8
Identities = 5/34 (14%), Positives = 9/34 (26%), Gaps = 1/34 (2%)
Query: 70 NFLKKNNIKIWDQWADENGDLGPIYGYQWRSWPT 103
F K + + D D+ Y +
Sbjct: 85 AFAKSTGVT-YPLGLDPGADIFAKYALRDAGITR 117
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.5 bits (61), Expect = 5.6
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 10/49 (20%)
Query: 162 QLYQRSADIFLGL---PFNIASY----SLLIHIIAHETGLKVG---DFI 200
+Y + L PFN S +L+ I E +G D I
Sbjct: 521 SIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFIYDTEKNGGLGWDLDAI 569
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase,
amidotransferase, ATP pyrophosphatase, NAD-adenylate;
HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB:
1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A
2pza_A* 2pz8_A
Length = 271
Score = 26.8 bits (60), Expect = 6.9
Identities = 4/37 (10%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 110 DQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPC 146
D++ ++ + + +++++ HK ++P
Sbjct: 229 DEIDDYLEGKEVSAKVSEALEKRYSMTE-HKRQVPAS 264
>1i78_A Protease VII; integral outer membrane protein, beta barrel, HYDR;
HET: BOG; 2.60A {Escherichia coli} SCOP: f.4.4.1
Length = 297
Score = 26.7 bits (58), Expect = 8.2
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 76 NIKIWDQWADENGDLGPIYGYQWR--SWPTLQGKYI-DQLSGVIKQIKTDPNSRRII 129
NIK W + N LG + GYQ S+ G YI G I + PN R I
Sbjct: 115 NIKGW-LLNEPNYRLGLMAGYQESRYSFTARGGSYIYSSEEGFRDDIGSFPNGERAI 170
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.448
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,139,923
Number of extensions: 236522
Number of successful extensions: 637
Number of sequences better than 10.0: 1
Number of HSP's gapped: 587
Number of HSP's successfully gapped: 51
Length of query: 264
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 172
Effective length of database: 4,133,061
Effective search space: 710886492
Effective search space used: 710886492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.4 bits)