RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2405
(264 letters)
>d2g8oa1 d.117.1.1 (A:1-264) Thymidylate synthase {Escherichia coli
[TaxId: 562]}
Length = 264
Score = 280 bits (717), Expect = 7e-96
Identities = 170/264 (64%), Positives = 209/264 (79%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
M QYL M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+
Sbjct: 1 MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELL 60
Query: 61 WFLSGSTNINFLKKNNIKIWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIK 120
WFL G TNI +L +NN+ IWD+WADENGDLGP+YG QWR+WPT G++IDQ++ V+ Q+K
Sbjct: 61 WFLQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLK 120
Query: 121 TDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIAS 180
DP+SRRIIVSAWNV ++ KM L PCH FQFYVA+ KLSCQLYQRS D+FLGLPFNIAS
Sbjct: 121 NDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIAS 180
Query: 181 YSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 240
Y+LL+H++A + L+VGDF+WTGGD HLY NH+DQ QL R P LP L I KP+S
Sbjct: 181 YALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIF 240
Query: 241 DYNFEDFQINSYNPQKSIYAPIAI 264
DY FEDF+I Y+P I AP+AI
Sbjct: 241 DYRFEDFEIEGYDPHPGIKAPVAI 264
>d1tswa_ d.117.1.1 (A:) Thymidylate synthase {Lactobacillus casei
[TaxId: 1582]}
Length = 316
Score = 275 bits (704), Expect = 4e-93
Identities = 147/314 (46%), Positives = 186/314 (59%), Gaps = 50/314 (15%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
YL+ + V + G K DRT GT SIFG+QMRF+L KGFPLLTTKK+ I EL+
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELL 62
Query: 61 WFLSGSTNINFLKKNNIKIW---------------------------------------- 80
WFL G TNI FL ++ IW
Sbjct: 63 WFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEM 122
Query: 81 ----------DQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIV 130
D +A + GDLG +YG QWR+W T +G IDQL VI+QIKT P SR +IV
Sbjct: 123 AKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRALIV 182
Query: 131 SAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAH 190
SAWN D+ M LPPCH L+QFYV + KLS QLYQRSADIFLG+PFNIASY+LL H++AH
Sbjct: 183 SAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAH 242
Query: 191 ETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQIN 250
E GL+VG+FI T GD HLY+NHLDQ ++QL R P P L + D++ +D ++
Sbjct: 243 ECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLL 302
Query: 251 SYNPQKSIYAPIAI 264
+Y+P +I AP+A+
Sbjct: 303 NYDPYPAIKAPVAV 316
>d1hvya_ d.117.1.1 (A:) Thymidylate synthase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 288
Score = 261 bits (667), Expect = 5e-88
Identities = 141/283 (49%), Positives = 182/283 (64%), Gaps = 20/283 (7%)
Query: 2 HQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIW 61
QYL ++H+ G++K DRTG GTLS+FG Q R++L+ FPLLTTK++ K ++ EL+W
Sbjct: 6 LQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLW 65
Query: 62 FLSGSTNINFLKKNNIKIWDQWAD------------ENGDLGPIYGYQWRSWPT------ 103
F+ GSTN L +KIWD E GDLGP+YG+QWR +
Sbjct: 66 FIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDME 125
Query: 104 --LQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSC 161
G+ +DQL VI IKT+P+ RRII+ AWN D+ M LPPCH L QFYV N++LSC
Sbjct: 126 SDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSELSC 185
Query: 162 QLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLL 221
QLYQRS D+ LG+PFNIASY+LL ++IAH TGLK GDFI T GD H+YLNH++ + QL
Sbjct: 186 QLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQ 245
Query: 222 RNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
R P P L IL K + D+ EDFQI YNP +I +A+
Sbjct: 246 REPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 288
>d1seja2 d.117.1.1 (A:233-521) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, TS domain
{Cryptosporidium hominis [TaxId: 237895]}
Length = 289
Score = 259 bits (664), Expect = 1e-87
Identities = 119/284 (41%), Positives = 168/284 (59%), Gaps = 21/284 (7%)
Query: 2 HQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIW 61
QYL+ + V +G + +RTG+ T SIFG MRF++++ FPLLTTKK+ ++SI ELIW
Sbjct: 6 FQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRSIFEELIW 65
Query: 62 FLSGSTNINFLKKNNIKIWDQWAD------------ENGDLGPIYGYQWRSWP------- 102
F+ G TN N L + + IW E DLGPIYG+QWR +
Sbjct: 66 FIKGDTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMH 125
Query: 103 -TLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVAN-NKLS 160
G +DQL+ +I+ +K +P RR I++AWN S + +M LPPCH+L Q+YV N N LS
Sbjct: 126 DDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNCLS 185
Query: 161 CQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQL 220
C LYQRS D+ LG PFNIASY++L ++A G + G+ GD H+Y NHL Q ++QL
Sbjct: 186 CNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQL 245
Query: 221 LRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
R P P L K ++ D+ +ED ++ Y P +I +A+
Sbjct: 246 SRTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 289
>d1f28a_ d.117.1.1 (A:) Thymidylate synthase {Pneumocystis carinii
[TaxId: 4754]}
Length = 295
Score = 258 bits (660), Expect = 7e-87
Identities = 125/291 (42%), Positives = 182/291 (62%), Gaps = 28/291 (9%)
Query: 2 HQYLNFMRHVYNSGIKKIDRTGVGTLSIFG-YQMRFNLQ-KGFPLLTTKKLHVKSIIYEL 59
QYLN ++++ N G + DRTG GTLS+F ++F+L+ K FPLLTTK++ ++ +I EL
Sbjct: 5 QQYLNLVQYIINHGEDRPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRGVIEEL 64
Query: 60 IWFLSGSTNINFLKKNNIKIWDQW------------ADENGDLGPIYGYQWRSWPTLQ-- 105
+WF+ G T+ L++ NI IWD + GDLGPIYG+QWR +
Sbjct: 65 LWFIRGETDSLKLREKNIHIWDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFGAEYID 124
Query: 106 ------GKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYV----- 154
G+ +DQL+ +I++I+T P RR+I+SAWN +D+ KM LPPCH+ QFYV
Sbjct: 125 CKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWNPADLEKMALPPCHMFCQFYVHIPSN 184
Query: 155 -ANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHL 213
+LSCQLYQRS D+ LG+PFNIASY+LL +IAH L GDFI GDCH+Y +H+
Sbjct: 185 NHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHIYKDHI 244
Query: 214 DQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
+ ++QL R+P P L++ D+ +DF I +Y+P ++I ++I
Sbjct: 245 EALQQQLTRSPRPFPTLSLNRSITDIEDFTLDDFNIQNYHPYETIKMKMSI 295
>d1j3kc_ d.117.1.1 (C:) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, TS domain {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 326
Score = 250 bits (639), Expect = 3e-83
Identities = 128/282 (45%), Positives = 169/282 (59%), Gaps = 20/282 (7%)
Query: 2 HQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIW 61
+QYLN + + +G K+ DRTGVG LS FGY M+F+L + FPLLTTKKL ++ II EL+W
Sbjct: 44 YQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELLW 103
Query: 62 FLSGSTNINFLKKNNIKIWDQWADEN------------GDLGPIYGYQWRSWP------- 102
F+ G TN N L N++IW+ DLGPIYG+QWR +
Sbjct: 104 FIRGETNGNTLLNKNVRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMY 163
Query: 103 -TLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSC 161
+ K +DQL +I IK DP SRRI++ AWNV D+ +M LPPCHIL QFYV + KLSC
Sbjct: 164 DNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKLSC 223
Query: 162 QLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLL 221
+YQRS D+ LG+PFNIASYS+ H+IA L+ FI G+ H+Y NH+D + QL
Sbjct: 224 IMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLN 283
Query: 222 RNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIA 263
R P P L + K+ D+ DF I +Y + I +A
Sbjct: 284 RIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMA 325
>d1tisa_ d.117.1.1 (A:) Thymidylate synthase {Bacteriophage T4
[TaxId: 10665]}
Length = 286
Score = 234 bits (597), Expect = 2e-77
Identities = 124/291 (42%), Positives = 174/291 (59%), Gaps = 32/291 (10%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
M QY + ++ ++ +G + DRTG GT+++FG ++R++L KGFP +TTKKL K+ I ELI
Sbjct: 1 MKQYQDLIKDIFENGYETDDRTGTGTIALFGSKLRWDLTKGFPAVTTKKLAWKACIAELI 60
Query: 61 WFLSGSTNINFLK-------KNNIKIWDQWAD--------ENGDLGPIYGYQWRSWPTLQ 105
WFLSGSTN+N L+ +WD+ + +G+LGPIYG QWR +
Sbjct: 61 WFLSGSTNVNDLRLIQHDSLIQGKTVWDENYENQAKDLGYHSGELGPIYGKQWRDF---- 116
Query: 106 GKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQ 165
+DQ+ VI +IK PN RR IVSAWN +++ M LPPCH+ +QF V N L Q YQ
Sbjct: 117 -GGVDQIIEVIDRIKKLPNDRRQIVSAWNPAELKYMALPPCHMFYQFNVRNGYLDLQWYQ 175
Query: 166 RSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPG 225
RS D+FLGLPFNIASY+ L+HI+A L GD I++GG+ H+Y+NH++Q ++ L R P
Sbjct: 176 RSVDVFLGLPFNIASYATLVHIVAKMCNLIPGDLIFSGGNTHIYMNHVEQCKEILRREPK 235
Query: 226 SLPNLTILCKP------------KSSLDYNFEDFQINSYNPQKSIYAPIAI 264
L L I P K L +DF +N+Y I +A+
Sbjct: 236 ELCELVISGLPYKFRYLSTKEQLKYVLKLRPKDFVLNNYVSHPPIKGKMAV 286
>d1b5ea_ d.117.1.1 (A:) dCMP hydroxymethylase {Bacteriophage T4
[TaxId: 10665]}
Length = 241
Score = 226 bits (578), Expect = 3e-75
Identities = 47/236 (19%), Positives = 81/236 (34%), Gaps = 22/236 (9%)
Query: 1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
+ + + +D+TGV T+ I G + F L + I EL
Sbjct: 8 VEEIRLHLGLALKEKDFVVDKTGVKTIEIIGASFVADEPFIFGALNDEY-----IQRELE 62
Query: 61 WFLSGSTNINFLKKNNIKIWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIK 120
W+ S S + + KIW Q A G++ YG+ S Q + ++
Sbjct: 63 WYKSKSLFVKDIPGETPKIWQQVASSKGEINSNYGWAIWSED-----NYAQYDMCLAELG 117
Query: 121 TDPNSRRIIVSAWN-----VSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLP 175
+P+SRR I+ + M C Q+ + + K++ + RS D+ G
Sbjct: 118 QNPDSRRGIMIYTRPSMQFDYNKDGMSDFMCTNTVQYLIRDKKINAVVNMRSNDVVFGFR 177
Query: 176 FNIASYSLLIHIIAHE-------TGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNP 224
+ A ++ + + K G IW G H+Y H
Sbjct: 178 NDYAWQKYVLDKLVSDLNAGDSTRQYKAGSIIWNVGSLHVYSRHFYLVDHWWKTGE 233
>d1bkpa_ d.117.1.1 (A:) Thymidylate synthase {Bacillus subtilis
[TaxId: 1423]}
Length = 278
Score = 219 bits (558), Expect = 1e-71
Identities = 95/275 (34%), Positives = 150/275 (54%), Gaps = 13/275 (4%)
Query: 2 HQYLNFMRHVYNSGIK----------KIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLH 51
QY + ++ + N+GI D T TLS+ QMRF+ P+LTTKK+
Sbjct: 5 KQYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFDN-SEVPILTTKKVA 63
Query: 52 VKSIIYELIWFLSGSTN-INFLKKNNIKIWDQWADENGDLGPIYGYQWRS-WPTLQGKYI 109
K+ I EL+W +N +N L + IWDQW E+G +G YG+Q +L G+ +
Sbjct: 64 WKTAIKELLWIWQLKSNDVNDLNMMGVHIWDQWKQEDGTIGHAYGFQLGKKNRSLNGEKV 123
Query: 110 DQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSAD 169
DQ+ ++ Q+K +P+SRR I WN ++ M L PC Q+YV + KL ++ RS D
Sbjct: 124 DQVDYLLHQLKNNPSSRRHITMLWNPDELDAMALTPCVYETQWYVKHGKLHLEVRARSND 183
Query: 170 IFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPN 229
+ LG PFN+ Y++L +IA TG ++G++I+ GDCH+Y H+D + Q+ R P
Sbjct: 184 MALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCHVYTRHIDNLKIQMEREQFEAPE 243
Query: 230 LTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI 264
L I + K D+ +DF++ +Y + +A+
Sbjct: 244 LWINPEVKDFYDFTIDDFKLINYKHGDKLLFEVAV 278
>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 117
Score = 34.2 bits (78), Expect = 0.003
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 188 IAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPK 237
IAH+ GL+ GD + +L QAR ++ + P
Sbjct: 54 IAHQAGLEYGDQLLEFNGINLRSATEQQAR-LIIGQQCDTITILAQYNPH 102
>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 82
Score = 31.5 bits (71), Expect = 0.019
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 189 AHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 233
A GL I ++ Q +L G++ +TI+
Sbjct: 36 AARNGLLTEHNICEINGQNVIGLKDSQIAD-ILSTSGTVVTITIM 79
>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 104
Score = 30.8 bits (69), Expect = 0.043
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 189 AHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 233
A GL++GDF+ ++ Q ++R G+ + ++
Sbjct: 56 AWRAGLRMGDFLIEVNGQNVVKVGHRQVV-NMIRQGGNTLMVKVV 99
>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor
protein-binding family A member 1 (APBA1, X11) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 27.8 bits (62), Expect = 0.29
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 189 AHETGLKVGD-FIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 233
A G++VG I G + H +L N ++ +
Sbjct: 33 AERGGVRVGHRIIEINGQSVVATPHEKIV--HILSNAVGEIHMKTM 76
>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 28.3 bits (63), Expect = 0.29
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 189 AHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKP 236
A GL+ GD + + D+A K L + G +TI +P
Sbjct: 38 ASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRP 85
>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus
subtilis [TaxId: 1423]}
Length = 271
Score = 29.1 bits (64), Expect = 0.45
Identities = 16/151 (10%), Positives = 48/151 (31%), Gaps = 25/151 (16%)
Query: 2 HQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLH--VKSIIYEL 59
+ + + T ++ G+ ++ L T ++++ EL
Sbjct: 137 RTRMIAQYAIGGQEGLLVLGTDHAAEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLKEL 196
Query: 60 IWFLSGSTNINFLKKNNIKIWDQWADEN--GDLGPIYGYQWRSWPTLQGKYIDQLSGVIK 117
+LK+ + D+ ++ +LG Y D++ ++
Sbjct: 197 GAP-----ERLYLKEPTADLLDEKPQQSDETELGISY---------------DEIDDYLE 236
Query: 118 QIKTDPNSRRIIVSAWNVSDIHKMKLPPCHI 148
+ + +++++ HK ++P
Sbjct: 237 GKEVSAKVSEALEKRYSMTE-HKRQVPASMF 266
>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 88
Score = 27.2 bits (60), Expect = 0.70
Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 1/45 (2%)
Query: 189 AHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 233
A G+ G + D + + PG+ LT
Sbjct: 29 AANAGVPKGVVVTK-VDDRPINSADALVAAVRSKAPGATVALTFQ 72
>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 27.2 bits (60), Expect = 0.83
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 188 IAHETGL-KVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKS 238
A + G ++GD + + +L ++A L+N + L + KP S
Sbjct: 43 AAQKDGRLQIGDRLLAVNNTNLQDVRHEEAV-ASLKNTSDMVYLKV-AKPGS 92
>d1csei_ d.40.1.1 (I:) Eglin C {Leech (Hirudo medicinalis) [TaxId:
6421]}
Length = 63
Score = 26.2 bits (58), Expect = 0.92
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 3/32 (9%)
Query: 99 RSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIV 130
+S+P + GK +DQ + +
Sbjct: 1 KSFPEVVGKTVDQ---AREYFTLHYPQYNVYF 29
>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF
{Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 26.3 bits (58), Expect = 1.3
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 189 AHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 233
A + GL GD + ++ Q +R + L ++
Sbjct: 40 AEKAGLLAGDRLVEVNGENVEKETHQQVV-SRIRAALNAVRLLVV 83
>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 104
Score = 26.4 bits (58), Expect = 1.9
Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 191 ETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 240
+ L+ D + + A Q LR G + + + K +
Sbjct: 53 DGLLQENDRVVMVNGTPMEDVLHSFAV-QQLRKSGKIAAIVVKRPRKVQV 101
>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal
processing protease {Algae (Scenedesmus obliquus)
[TaxId: 3088]}
Length = 92
Score = 26.1 bits (57), Expect = 1.9
Identities = 9/45 (20%), Positives = 14/45 (31%)
Query: 189 AHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTIL 233
A + G + GD I T + L L S + +
Sbjct: 32 AEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLH 76
>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 99
Score = 26.0 bits (57), Expect = 2.3
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 188 IAHETG-LKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTI 232
+AH TG L++GD + + L ++ A Q+L+ L L I
Sbjct: 50 VAHRTGTLELGDKLLAIDNIRLDSCSMEDAV-QILQQCEDLVKLKI 94
>d1vqoa2 b.40.4.5 (A:1-90) N-terminal domain of ribosomal protein L2
{Archaeon Haloarcula marismortui [TaxId: 2238]}
Length = 90
Score = 24.7 bits (54), Expect = 6.1
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 186 HIIAHETGLKVGDFIWTG 203
I+A E G+ VGD + G
Sbjct: 67 LILAPE-GVGVGDELQVG 83
>d2bcqa1 a.60.6.1 (A:252-327) DNA polymerase lambda {Human (Homo
sapiens) [TaxId: 9606]}
Length = 76
Score = 24.0 bits (52), Expect = 8.8
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 164 YQRSADIFLGLPFNIASYSLLIHI--IAHETGLKVGDFIWTG 203
Y ++ + + SY I I K+ + + +G
Sbjct: 28 YAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESG 69
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.140 0.448
Gapped
Lambda K H
0.267 0.0594 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,059,336
Number of extensions: 49922
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 29
Length of query: 264
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 180
Effective length of database: 1,254,276
Effective search space: 225769680
Effective search space used: 225769680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.1 bits)