BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2406
(464 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 475 bits (1223), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/386 (59%), Positives = 308/386 (79%), Gaps = 6/386 (1%)
Query: 82 VGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVR 141
VGKTEIARRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D ++K R I K R
Sbjct: 61 VGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNR 120
Query: 142 TRAEDAAEDRVIDILVPSKEKSNLDTDFXXXXXXISTRQIFRKRLREGALDNKEIEIELN 201
RAE+ AE+R++D+L+P + + T+ + RQ FRK+LREG LD+KEIEI+L
Sbjct: 121 YRAEELAEERILDVLIPPAKNNWGQTE--QQQEPSAARQAFRKKLREGQLDDKEIEIDLA 178
Query: 202 DTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDE 261
+EIM+PPGMEEMT+Q+++MF +G ++K RK+KI++A+KLLI+EEA KL+N +E
Sbjct: 179 AAPMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEE 238
Query: 262 IQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII 321
++Q AI+ VEQ+GI+F+DEIDKI R +++ D+SR GVQRDLLPLVEG TV+TK+G++
Sbjct: 239 LKQDAIDAVEQHGIVFIDEIDKICKRG-ESSGPDVSREGVQRDLLPLVEGCTVSTKHGMV 297
Query: 322 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEA 381
KTDHILFIASGAF +AKPSDLIPELQGR PIRVEL +L+ SDF RI+T N +T QY+A
Sbjct: 298 KTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKA 357
Query: 382 LLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS--- 438
L+ATEG+ IEF D GI+R+AE A+ +NE TENIGARRL+T +E+L+EE+S++++++S
Sbjct: 358 LMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQN 417
Query: 439 LLVDADYVNSRLGDLSINEDLSRYVL 464
+ +DADYV+ L L +EDLSR++L
Sbjct: 418 ITIDADYVSKHLDALVADEDLSRFIL 443
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 475 bits (1223), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/386 (59%), Positives = 308/386 (79%), Gaps = 6/386 (1%)
Query: 82 VGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVR 141
VGKTEIARRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D ++K R I K R
Sbjct: 60 VGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNR 119
Query: 142 TRAEDAAEDRVIDILVPSKEKSNLDTDFXXXXXXISTRQIFRKRLREGALDNKEIEIELN 201
RAE+ AE+R++D+L+P + + T+ + RQ FRK+LREG LD+KEIEI+L
Sbjct: 120 YRAEELAEERILDVLIPPAKNNWGQTE--QQQEPSAARQAFRKKLREGQLDDKEIEIDLA 177
Query: 202 DTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDE 261
+EIM+PPGMEEMT+Q+++MF +G ++K RK+KI++A+KLLI+EEA KL+N +E
Sbjct: 178 AAPMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEE 237
Query: 262 IQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII 321
++Q AI+ VEQ+GI+F+DEIDKI R +++ D+SR GVQRDLLPLVEG TV+TK+G++
Sbjct: 238 LKQDAIDAVEQHGIVFIDEIDKICKRG-ESSGPDVSREGVQRDLLPLVEGCTVSTKHGMV 296
Query: 322 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEA 381
KTDHILFIASGAF +AKPSDLIPELQGR PIRVEL +L+ SDF RI+T N +T QY+A
Sbjct: 297 KTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKA 356
Query: 382 LLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS--- 438
L+ATEG+ IEF D GI+R+AE A+ +NE TENIGARRL+T +E+L+EE+S++++++S
Sbjct: 357 LMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQN 416
Query: 439 LLVDADYVNSRLGDLSINEDLSRYVL 464
+ +DADYV+ L L +EDLSR++L
Sbjct: 417 ITIDADYVSKHLDALVADEDLSRFIL 442
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 475 bits (1223), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/386 (59%), Positives = 308/386 (79%), Gaps = 6/386 (1%)
Query: 82 VGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVR 141
VGKTEIARRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D ++K R I K R
Sbjct: 67 VGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNR 126
Query: 142 TRAEDAAEDRVIDILVPSKEKSNLDTDFXXXXXXISTRQIFRKRLREGALDNKEIEIELN 201
RAE+ AE+R++D+L+P + + T+ + RQ FRK+LREG LD+KEIEI+L
Sbjct: 127 YRAEELAEERILDVLIPPAKNNWGQTE--QQQEPSAARQAFRKKLREGQLDDKEIEIDLA 184
Query: 202 DTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDE 261
+EIM+PPGMEEMT+Q+++MF +G ++K RK+KI++A+KLLI+EEA KL+N +E
Sbjct: 185 AAPMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEE 244
Query: 262 IQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII 321
++Q AI+ VEQ+GI+F+DEIDKI R +++ D+SR GVQRDLLPLVEG TV+TK+G++
Sbjct: 245 LKQDAIDAVEQHGIVFIDEIDKICKRG-ESSGPDVSREGVQRDLLPLVEGCTVSTKHGMV 303
Query: 322 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEA 381
KTDHILFIASGAF +AKPSDLIPELQGR PIRVEL +L+ SDF RI+T N +T QY+A
Sbjct: 304 KTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKA 363
Query: 382 LLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS--- 438
L+ATEG+ IEF D GI+R+AE A+ +NE TENIGARRL+T +E+L+EE+S++++++S
Sbjct: 364 LMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQN 423
Query: 439 LLVDADYVNSRLGDLSINEDLSRYVL 464
+ +DADYV+ L L +EDLSR++L
Sbjct: 424 ITIDADYVSKHLDALVADEDLSRFIL 449
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 447 bits (1151), Expect = e-126, Method: Compositional matrix adjust.
Identities = 227/388 (58%), Positives = 310/388 (79%), Gaps = 9/388 (2%)
Query: 82 VGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVR 141
VGKTEIARRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D ++K R+ EI K R
Sbjct: 61 VGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNR 120
Query: 142 TRAEDAAEDRVIDILVPSKEKSNLDTDFXXXXXXISTRQIFRKRLREGALDNKEIEIELN 201
RAED AE+R++D L+P + N + STRQ FRK+LREG LD+KEIEI+++
Sbjct: 121 ARAEDVAEERILDALLPPAK--NQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVS 178
Query: 202 DTGPHM--EIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNE 259
G M EIM+PPGMEEMT Q++++F +G+ + K RK+KI++A+K LID+EA KL+N
Sbjct: 179 -AGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINP 237
Query: 260 DEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG 319
+E++QKAI+ VEQNGI+F+DEIDKI + + + D+SR GVQRDLLPLVEG+TV+TK+G
Sbjct: 238 EELKQKAIDAVEQNGIVFIDEIDKIC-KKGEYSGADVSREGVQRDLLPLVEGSTVSTKHG 296
Query: 320 IIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQY 379
++KTDHILFIASGAF +A+PSDLIPELQGR PIRVEL +LS +DF RI+T + LT+QY
Sbjct: 297 MVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQY 356
Query: 380 EALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNI-- 437
+AL+ATEG+ I F D ++++AE A+ +NE+TENIGARRL+T ME+L++++SF+++++
Sbjct: 357 KALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNG 416
Query: 438 -SLLVDADYVNSRLGDLSINEDLSRYVL 464
++ +DA YV LG++ NEDLSR++L
Sbjct: 417 QTVNIDAAYVADALGEVVENEDLSRFIL 444
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 431 bits (1108), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/387 (57%), Positives = 298/387 (77%), Gaps = 7/387 (1%)
Query: 82 VGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVR 141
VGKTEIARRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D + K R+ EI K R
Sbjct: 61 VGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAXKLVRQQEIAKNR 120
Query: 142 TRAEDAAEDRVIDILVPSKEKSNLDTDFXXXXXXISTRQIFRKRLREGALDNKEIEIELN 201
RAED AE+R++D L+P + N + STRQ FRK+LREG LD+KEIEI+++
Sbjct: 121 ARAEDVAEERILDALLPPAK--NQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVS 178
Query: 202 -DTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNED 260
+EI +PPG EE T Q++++F +G+ + K RK KI++A+K LID+EA KL+N +
Sbjct: 179 AGVSXGVEIXAPPGXEEXTNQLQSLFQNLGSDKTKKRKXKIKDALKALIDDEAAKLINPE 238
Query: 261 EIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI 320
E++QKAI+ VEQNGI+F+DEIDKI + + + D+SR GVQRDLLPLVEG+TV+TK+G
Sbjct: 239 ELKQKAIDAVEQNGIVFIDEIDKIC-KKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGX 297
Query: 321 IKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYE 380
+KTDHILFIASGAF +A+PSDLIPELQGR PIRVEL +LS +DF RI+T + LT+QY+
Sbjct: 298 VKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYK 357
Query: 381 ALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNS---NNI 437
AL ATEG+ I F D ++++AE A+ +NE+TENIGARRL+T E+L +++SF++ N
Sbjct: 358 ALXATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVXERLXDKISFSASDXNGQ 417
Query: 438 SLLVDADYVNSRLGDLSINEDLSRYVL 464
++ +DA YV LG++ NEDLSR++L
Sbjct: 418 TVNIDAAYVADALGEVVENEDLSRFIL 444
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 257 bits (656), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 119/202 (58%), Positives = 166/202 (82%), Gaps = 4/202 (1%)
Query: 266 AINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDH 325
AI+ VEQNGI+F+DEIDKI + + + D+SR GVQRDLLPLVEG+TV+TK+G++KTDH
Sbjct: 110 AIDAVEQNGIVFIDEIDKIC-KKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 168
Query: 326 ILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLAT 385
ILFIASGAF +A+PSDLIPELQGR PIRVEL +LS +DF RI+T + LT+QY+AL+AT
Sbjct: 169 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 228
Query: 386 EGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNI---SLLVD 442
EG+ I F D ++++AE A+ +NE+TENIGARRL+T ME+L++++SF+++++ ++ +D
Sbjct: 229 EGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNID 288
Query: 443 ADYVNSRLGDLSINEDLSRYVL 464
A YV LG++ NEDLSR++L
Sbjct: 289 AAYVADALGEVVENEDLSRFIL 310
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/45 (86%), Positives = 44/45 (97%)
Query: 82 VGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLID 126
VGKTEIARRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D
Sbjct: 61 VGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD 105
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 97/212 (45%), Gaps = 56/212 (26%)
Query: 272 QNGIIFLDEIDKITTRSSQNNNT--DISRAGVQRDLLPLVEGTTVNTK-----------Y 318
Q GI+F+DEIDKI +R S+N + D+S GVQ+ LL +VEG+ VN +
Sbjct: 137 QKGIVFIDEIDKI-SRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNF 195
Query: 319 GIIKTDHILFIASGAF--------------------------------HLAKPSD----- 341
I T ILFI +GAF HL + D
Sbjct: 196 IQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYG 255
Query: 342 LIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLA 401
LIPEL GR P+ LDS+S+ I+ L KQY+ L + + + F ++ I+ +A
Sbjct: 256 LIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIA 315
Query: 402 EIAYCINERTENIGARRLYTAMEKLLEEVSFN 433
++A ER GAR L +E ++ F+
Sbjct: 316 QLAL---ER--KTGARGLRAIIEDFCLDIMFD 342
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 83 GKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIS 128
GKT +A+ LAK + P +AT TE GYVG DV+ I+ L+ S
Sbjct: 84 GKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 129
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 94/215 (43%), Gaps = 58/215 (26%)
Query: 272 QNGIIFLDEIDKITTRSSQNNNT-DISRAGVQRDLLPLVEGTTV-----------NTKYG 319
Q GI+++D+IDKI+ +S + T D+S GVQ+ LL L+EGT ++
Sbjct: 116 QRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175
Query: 320 IIKTDHILFIASGAFH----------------------------------LAK--PSDLI 343
+ T ILFI GAF LA+ P DLI
Sbjct: 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 235
Query: 344 -----PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQ 398
PE GR P+ L+ LS +I+ LTKQY+AL EG+ +EF D+ +
Sbjct: 236 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 295
Query: 399 RLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN 433
+A+ A GAR L + +E L + ++
Sbjct: 296 AIAKKAMA-----RKTGARGLRSIVEAALLDTMYD 325
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 83 GKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVR 141
GKT +A LA+L + PF +AT TE GYVG DV+ II+ L+ Q ++++ K +
Sbjct: 63 GKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL-----QKCDYDVQKAQ 116
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 94/215 (43%), Gaps = 58/215 (26%)
Query: 272 QNGIIFLDEIDKITTRSSQNNNT-DISRAGVQRDLLPLVEGTTV-----------NTKYG 319
Q GI+++D+IDKI+ +S + T D+S GVQ+ LL L+EGT ++
Sbjct: 116 QRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175
Query: 320 IIKTDHILFIASGAFH----------------------------------LAK--PSDLI 343
+ T ILFI GAF LA+ P DLI
Sbjct: 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 235
Query: 344 -----PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQ 398
PE GR P+ L+ LS +I+ LTKQY+AL EG+ +EF D+ +
Sbjct: 236 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 295
Query: 399 RLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN 433
+A+ A GAR L + +E L + ++
Sbjct: 296 AIAKKAMA-----RKTGARGLRSIVEAALLDTMYD 325
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 83 GKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVR 141
GKT +A LA+L + PF +AT TE GYVG DV+ II+ L+ Q ++++ K +
Sbjct: 63 GKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL-----QKCDYDVQKAQ 116
>pdb|2F8N|K Chain K, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 149
Score = 28.1 bits (61), Expect = 9.5, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 215 MEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAI 267
+E +TA+I + KKTR I + + DEE NKLL I Q +
Sbjct: 75 LEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGV 127
>pdb|2HIO|A Chain A, Histone Octamer (Chicken), Chromosomal Protein
pdb|3C9K|A Chain A, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|E Chain E, Model Of Histone Octamer Tubular Crystals
Length = 128
Score = 28.1 bits (61), Expect = 9.7, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 215 MEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAI 267
+E +TA+I + KKTR I + + DEE NKLL + I Q +
Sbjct: 55 LEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGV 107
>pdb|1EQZ|A Chain A, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|E Chain E, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1HQ3|A Chain A, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|E Chain E, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|A Chain A, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|E Chain E, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2ARO|A Chain A, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|E Chain E, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
Length = 129
Score = 28.1 bits (61), Expect = 9.7, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 215 MEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAI 267
+E +TA+I + KKTR I + + DEE NKLL + I Q +
Sbjct: 56 LEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGV 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,970,638
Number of Sequences: 62578
Number of extensions: 467446
Number of successful extensions: 1279
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1225
Number of HSP's gapped (non-prelim): 33
length of query: 464
length of database: 14,973,337
effective HSP length: 102
effective length of query: 362
effective length of database: 8,590,381
effective search space: 3109717922
effective search space used: 3109717922
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)