Query psy2406
Match_columns 464
No_of_seqs 312 out of 3176
Neff 5.8
Searched_HMMs 46136
Date Sat Aug 17 00:10:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2406.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2406hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1220 HslU ATP-dependent pro 100.0 3E-90 6.4E-95 688.4 39.2 430 29-464 10-444 (444)
2 TIGR00390 hslU ATP-dependent p 100.0 7.4E-79 1.6E-83 629.9 42.5 430 28-464 6-441 (441)
3 PRK05201 hslU ATP-dependent pr 100.0 1.1E-78 2.4E-83 628.9 42.0 430 28-464 9-443 (443)
4 COG1219 ClpX ATP-dependent pro 100.0 1.7E-51 3.6E-56 408.4 21.9 282 28-455 55-396 (408)
5 COG0542 clpA ATP-binding subun 100.0 1.3E-50 2.8E-55 444.0 19.8 264 9-433 466-757 (786)
6 KOG0745|consensus 100.0 4.2E-47 9.2E-52 388.5 23.4 236 71-447 226-528 (564)
7 TIGR00382 clpX endopeptidase C 100.0 1.4E-43 2.9E-48 369.8 21.8 282 27-451 70-409 (413)
8 PRK05342 clpX ATP-dependent pr 100.0 2.5E-43 5.4E-48 368.6 23.7 283 27-452 64-404 (412)
9 PRK11034 clpA ATP-dependent Cl 100.0 9.2E-39 2E-43 355.0 19.8 270 3-433 426-718 (758)
10 CHL00095 clpC Clp protease ATP 100.0 7.2E-38 1.6E-42 352.3 21.0 264 9-433 484-784 (821)
11 TIGR02639 ClpA ATP-dependent C 100.0 2.2E-37 4.9E-42 344.6 20.6 264 9-433 429-714 (731)
12 TIGR03345 VI_ClpV1 type VI sec 100.0 3E-37 6.5E-42 347.6 18.9 263 9-433 541-833 (852)
13 TIGR03346 chaperone_ClpB ATP-d 100.0 2.7E-34 5.9E-39 324.5 20.3 264 9-433 540-828 (852)
14 PRK10865 protein disaggregatio 100.0 2.2E-34 4.9E-39 324.9 19.0 264 9-433 543-831 (857)
15 KOG1051|consensus 100.0 1.2E-34 2.5E-39 322.0 15.1 265 4-433 532-836 (898)
16 COG1222 RPT1 ATP-dependent 26S 99.9 8.8E-28 1.9E-32 242.8 13.1 207 70-457 184-396 (406)
17 TIGR00763 lon ATP-dependent pr 99.9 2.9E-24 6.3E-29 241.1 21.8 276 9-455 296-588 (775)
18 COG1223 Predicted ATPase (AAA+ 99.9 3.9E-25 8.3E-30 215.9 12.6 235 34-455 121-357 (368)
19 KOG0730|consensus 99.9 1.3E-24 2.8E-29 232.9 14.0 238 39-462 443-686 (693)
20 PF07724 AAA_2: AAA domain (Cd 99.9 1E-25 2.3E-30 210.1 2.7 80 272-353 68-171 (171)
21 PRK10787 DNA-binding ATP-depen 99.9 5.7E-23 1.2E-27 230.2 22.7 163 272-458 416-587 (784)
22 COG0466 Lon ATP-dependent Lon 99.9 1E-22 2.2E-27 220.2 18.8 165 272-459 417-590 (782)
23 KOG0733|consensus 99.9 8.2E-23 1.8E-27 217.1 16.7 210 69-452 543-768 (802)
24 KOG0728|consensus 99.9 3.5E-23 7.6E-28 201.5 12.4 209 70-458 180-393 (404)
25 KOG0738|consensus 99.9 1.8E-22 3.9E-27 205.8 12.5 185 70-427 243-429 (491)
26 COG2256 MGS1 ATPase related to 99.9 8.8E-22 1.9E-26 202.0 17.2 139 272-458 104-243 (436)
27 PF05496 RuvB_N: Holliday junc 99.9 1.5E-21 3.3E-26 188.7 14.2 117 272-426 101-225 (233)
28 KOG0733|consensus 99.9 8.2E-22 1.8E-26 209.5 12.8 148 70-369 222-371 (802)
29 KOG0731|consensus 99.9 1.5E-21 3.4E-26 214.2 14.3 206 69-451 342-551 (774)
30 KOG2004|consensus 99.9 3.6E-21 7.8E-26 207.5 15.2 164 272-458 505-711 (906)
31 PLN00020 ribulose bisphosphate 99.9 3.3E-21 7.2E-26 197.6 13.3 157 69-369 146-308 (413)
32 KOG0734|consensus 99.9 3.4E-21 7.3E-26 202.4 13.2 207 67-453 333-541 (752)
33 CHL00195 ycf46 Ycf46; Provisio 99.8 3.6E-20 7.8E-25 198.0 17.7 204 70-453 258-463 (489)
34 COG0464 SpoVK ATPases of the A 99.8 8E-20 1.7E-24 195.3 18.7 206 70-452 275-482 (494)
35 TIGR01243 CDC48 AAA family ATP 99.8 5.3E-20 1.1E-24 205.7 16.0 217 70-462 486-722 (733)
36 CHL00181 cbbX CbbX; Provisiona 99.8 6.6E-20 1.4E-24 184.1 14.9 147 268-447 119-280 (287)
37 TIGR02881 spore_V_K stage V sp 99.8 3.2E-19 6.9E-24 176.0 16.0 139 268-435 102-243 (261)
38 KOG0736|consensus 99.8 2.2E-19 4.7E-24 195.0 15.3 207 72-452 706-931 (953)
39 KOG0727|consensus 99.8 1.1E-19 2.3E-24 177.4 11.2 207 70-457 188-400 (408)
40 KOG0739|consensus 99.8 2E-19 4.3E-24 178.8 11.6 192 39-407 142-334 (439)
41 PTZ00454 26S protease regulato 99.8 1E-18 2.2E-23 182.9 17.4 151 272-458 238-391 (398)
42 TIGR02880 cbbX_cfxQ probable R 99.8 1.6E-18 3.4E-23 173.8 17.7 136 272-435 121-258 (284)
43 KOG2028|consensus 99.8 1E-18 2.2E-23 177.4 16.1 146 273-458 223-373 (554)
44 CHL00206 ycf2 Ycf2; Provisiona 99.8 1E-18 2.2E-23 203.9 17.0 148 264-451 1726-1875(2281)
45 TIGR01241 FtsH_fam ATP-depende 99.8 1.8E-18 3.9E-23 185.4 17.3 147 272-454 147-296 (495)
46 COG0465 HflB ATP-dependent Zn 99.8 1.2E-18 2.6E-23 188.3 15.0 207 69-453 181-390 (596)
47 PRK03992 proteasome-activating 99.8 4.1E-18 8.9E-23 177.7 17.9 145 272-454 224-373 (389)
48 COG2255 RuvB Holliday junction 99.8 5.4E-18 1.2E-22 167.9 16.6 143 271-454 102-252 (332)
49 KOG0735|consensus 99.8 3.4E-18 7.4E-23 184.5 13.7 178 70-424 700-879 (952)
50 KOG0737|consensus 99.8 4.2E-18 9.1E-23 173.4 13.3 205 40-425 102-306 (386)
51 TIGR03689 pup_AAA proteasome A 99.8 1.2E-17 2.7E-22 179.0 17.6 86 272-370 289-376 (512)
52 KOG0729|consensus 99.8 1.3E-18 2.7E-23 171.0 8.1 196 70-446 210-411 (435)
53 CHL00176 ftsH cell division pr 99.8 1.2E-17 2.7E-22 183.6 16.1 146 272-453 275-423 (638)
54 PTZ00361 26 proteosome regulat 99.7 1.2E-17 2.6E-22 176.5 14.7 145 272-456 276-427 (438)
55 KOG0726|consensus 99.7 4.4E-18 9.5E-23 168.8 7.6 208 69-457 217-430 (440)
56 TIGR01242 26Sp45 26S proteasom 99.7 7.8E-17 1.7E-21 166.3 16.4 144 272-453 215-363 (364)
57 KOG0652|consensus 99.7 1.3E-17 2.7E-22 163.6 9.3 85 272-370 264-353 (424)
58 KOG0740|consensus 99.7 9.7E-17 2.1E-21 167.7 14.7 184 71-428 186-369 (428)
59 PRK14956 DNA polymerase III su 99.7 3E-16 6.5E-21 166.8 18.0 124 272-451 121-244 (484)
60 KOG0651|consensus 99.7 2.3E-17 5E-22 164.9 8.5 200 70-446 165-366 (388)
61 PRK10733 hflB ATP-dependent me 99.7 3E-16 6.6E-21 173.3 17.9 146 272-453 244-392 (644)
62 TIGR00635 ruvB Holliday juncti 99.7 9.6E-16 2.1E-20 153.4 19.3 140 272-452 81-228 (305)
63 PRK13342 recombination factor 99.7 4.4E-16 9.6E-21 163.5 16.8 128 272-454 92-220 (413)
64 PRK00080 ruvB Holliday junctio 99.7 1.1E-15 2.4E-20 155.6 18.8 140 272-452 102-249 (328)
65 TIGR02902 spore_lonB ATP-depen 99.7 6.6E-16 1.4E-20 167.2 18.0 144 267-453 171-332 (531)
66 PRK14962 DNA polymerase III su 99.7 1.4E-15 3E-20 162.5 17.1 126 272-453 117-242 (472)
67 PRK13341 recombination factor 99.7 2.1E-15 4.7E-20 168.0 18.3 139 272-454 109-248 (725)
68 PF00004 AAA: ATPase family as 99.6 5.8E-16 1.3E-20 134.2 9.1 72 273-357 59-131 (132)
69 PRK14958 DNA polymerase III su 99.6 2.8E-15 6.1E-20 161.5 16.3 126 272-453 119-244 (509)
70 PRK14960 DNA polymerase III su 99.6 5.4E-15 1.2E-19 161.7 17.2 125 272-452 118-242 (702)
71 PRK07003 DNA polymerase III su 99.6 5E-15 1.1E-19 163.5 16.7 124 272-451 119-242 (830)
72 PRK14949 DNA polymerase III su 99.6 7.2E-15 1.6E-19 164.7 17.6 107 272-427 119-225 (944)
73 KOG0741|consensus 99.6 5.6E-16 1.2E-20 163.3 8.0 220 25-406 211-438 (744)
74 PRK12323 DNA polymerase III su 99.6 4.3E-15 9.4E-20 162.1 14.9 107 272-427 124-230 (700)
75 TIGR02639 ClpA ATP-dependent C 99.6 5.5E-15 1.2E-19 165.5 15.7 110 272-407 274-384 (731)
76 PRK14961 DNA polymerase III su 99.6 1.5E-14 3.1E-19 149.7 16.9 125 272-452 119-243 (363)
77 PRK06645 DNA polymerase III su 99.6 1.6E-14 3.5E-19 155.4 17.6 130 272-454 128-257 (507)
78 PRK07994 DNA polymerase III su 99.6 1.5E-14 3.2E-19 159.0 16.8 124 272-451 119-242 (647)
79 TIGR01243 CDC48 AAA family ATP 99.6 1.5E-14 3.2E-19 162.1 16.6 84 272-369 271-356 (733)
80 PRK14957 DNA polymerase III su 99.6 2.9E-14 6.3E-19 154.4 16.6 125 272-452 119-243 (546)
81 PRK14964 DNA polymerase III su 99.6 2.8E-14 6.1E-19 152.7 16.3 126 272-453 116-241 (491)
82 PRK07764 DNA polymerase III su 99.6 3.4E-14 7.5E-19 160.3 16.9 125 272-451 120-244 (824)
83 PRK14952 DNA polymerase III su 99.6 4.8E-14 1E-18 153.9 17.0 126 272-452 118-243 (584)
84 PRK14951 DNA polymerase III su 99.6 4.8E-14 1E-18 154.6 17.0 125 272-452 124-248 (618)
85 PRK08691 DNA polymerase III su 99.6 5.2E-14 1.1E-18 154.9 17.2 126 272-453 119-244 (709)
86 TIGR03345 VI_ClpV1 type VI sec 99.6 2.9E-14 6.3E-19 161.9 14.7 109 272-407 280-389 (852)
87 PRK05563 DNA polymerase III su 99.6 1.5E-13 3.3E-18 149.7 19.0 126 272-453 119-244 (559)
88 KOG0730|consensus 99.5 5.7E-14 1.2E-18 151.6 15.1 106 272-406 278-384 (693)
89 KOG0732|consensus 99.5 3.6E-14 7.7E-19 160.4 14.0 125 272-430 363-489 (1080)
90 TIGR02903 spore_lon_C ATP-depe 99.5 2.3E-13 5E-18 149.8 19.7 143 272-453 265-430 (615)
91 PLN03025 replication factor C 99.5 5.3E-14 1.1E-18 142.8 13.5 123 272-451 99-221 (319)
92 PRK14959 DNA polymerase III su 99.5 1.6E-13 3.4E-18 150.2 17.1 125 272-452 119-243 (624)
93 PRK14969 DNA polymerase III su 99.5 1.3E-13 2.8E-18 149.3 16.5 125 272-452 119-243 (527)
94 PRK14963 DNA polymerase III su 99.5 2.8E-13 6.2E-18 145.9 17.6 125 272-453 116-240 (504)
95 PRK14965 DNA polymerase III su 99.5 2E-13 4.3E-18 149.3 15.3 125 272-452 119-243 (576)
96 PRK12402 replication factor C 99.5 6.3E-13 1.4E-17 134.0 17.6 124 272-452 125-248 (337)
97 PRK00411 cdc6 cell division co 99.5 1.2E-12 2.5E-17 135.5 19.5 145 271-453 137-282 (394)
98 TIGR02928 orc1/cdc6 family rep 99.5 2.5E-12 5.4E-17 131.6 21.3 145 271-452 128-273 (365)
99 PRK06893 DNA replication initi 99.5 2.4E-13 5.3E-18 132.0 13.2 133 272-451 91-228 (229)
100 PRK06647 DNA polymerase III su 99.5 8.3E-13 1.8E-17 144.0 18.4 124 272-451 119-242 (563)
101 PRK14970 DNA polymerase III su 99.5 9.2E-13 2E-17 135.8 17.8 126 272-453 108-233 (367)
102 PRK07133 DNA polymerase III su 99.5 4.5E-13 9.7E-18 148.6 16.3 124 272-451 118-241 (725)
103 PRK04195 replication factor C 99.5 8E-13 1.7E-17 141.6 17.7 107 272-425 98-205 (482)
104 PRK14953 DNA polymerase III su 99.5 7.5E-13 1.6E-17 142.1 17.5 125 272-452 119-243 (486)
105 PRK08084 DNA replication initi 99.5 2.3E-13 4.9E-18 132.8 12.0 132 273-451 98-234 (235)
106 TIGR02397 dnaX_nterm DNA polym 99.5 8.1E-13 1.8E-17 134.5 15.8 125 272-452 117-241 (355)
107 KOG0989|consensus 99.5 2.8E-13 6.1E-18 135.7 11.7 107 271-426 128-234 (346)
108 PRK06305 DNA polymerase III su 99.5 7E-13 1.5E-17 141.1 15.2 125 272-452 121-245 (451)
109 PRK09111 DNA polymerase III su 99.5 1.8E-12 3.8E-17 142.2 18.7 125 272-452 132-256 (598)
110 PRK05896 DNA polymerase III su 99.5 5.2E-13 1.1E-17 145.5 14.4 123 272-450 119-241 (605)
111 PRK08451 DNA polymerase III su 99.5 2E-12 4.3E-17 139.8 18.7 124 272-451 117-240 (535)
112 PRK14954 DNA polymerase III su 99.5 2.1E-12 4.5E-17 142.0 19.0 130 272-453 127-257 (620)
113 COG2812 DnaX DNA polymerase II 99.5 4.1E-13 8.9E-18 144.0 13.1 126 272-453 119-244 (515)
114 PRK14955 DNA polymerase III su 99.4 5.4E-13 1.2E-17 139.7 12.9 130 272-453 127-257 (397)
115 PHA02544 44 clamp loader, smal 99.4 1.6E-12 3.4E-17 130.8 14.7 114 272-426 100-213 (316)
116 PRK10865 protein disaggregatio 99.4 1.2E-12 2.6E-17 149.0 14.7 108 272-406 271-379 (857)
117 PTZ00112 origin recognition co 99.4 4.5E-12 9.7E-17 141.4 18.0 137 272-453 869-1006(1164)
118 TIGR00362 DnaA chromosomal rep 99.4 2.1E-12 4.7E-17 135.1 14.0 137 272-453 199-337 (405)
119 TIGR02640 gas_vesic_GvpN gas v 99.4 1.5E-12 3.3E-17 129.0 11.8 142 272-451 105-255 (262)
120 PRK14948 DNA polymerase III su 99.4 5E-12 1.1E-16 139.3 16.9 123 272-451 121-243 (620)
121 COG1224 TIP49 DNA helicase TIP 99.4 2.7E-12 5.8E-17 130.9 13.1 129 273-449 292-428 (450)
122 TIGR03420 DnaA_homol_Hda DnaA 99.4 6.2E-12 1.3E-16 120.0 14.8 132 273-450 91-225 (226)
123 PRK14950 DNA polymerase III su 99.4 6.2E-12 1.3E-16 137.9 16.6 125 272-452 120-244 (585)
124 PRK11034 clpA ATP-dependent Cl 99.4 6E-12 1.3E-16 141.3 16.7 110 272-407 278-388 (758)
125 PRK00149 dnaA chromosomal repl 99.4 2.5E-12 5.5E-17 136.5 13.0 134 272-453 211-349 (450)
126 PRK00440 rfc replication facto 99.4 1.5E-11 3.3E-16 122.9 17.4 125 272-453 102-226 (319)
127 PRK08727 hypothetical protein; 99.4 7.6E-12 1.7E-16 121.9 14.8 132 272-451 93-229 (233)
128 TIGR03346 chaperone_ClpB ATP-d 99.4 2.3E-12 4.9E-17 146.8 12.6 108 272-406 266-374 (852)
129 CHL00095 clpC Clp protease ATP 99.4 2.7E-12 5.9E-17 145.7 12.8 108 272-406 271-379 (821)
130 KOG0744|consensus 99.4 2E-12 4.4E-17 130.3 10.4 83 275-369 253-337 (423)
131 KOG0742|consensus 99.4 3.4E-12 7.3E-17 131.9 12.2 131 273-425 444-587 (630)
132 TIGR02974 phageshock_pspF psp 99.4 3.5E-12 7.7E-17 130.6 12.1 130 272-428 93-231 (329)
133 PRK05642 DNA replication initi 99.4 1.1E-11 2.4E-16 121.0 14.5 132 272-451 97-233 (234)
134 PF07728 AAA_5: AAA domain (dy 99.4 7.7E-13 1.7E-17 117.5 5.7 36 73-108 1-36 (139)
135 PRK14971 DNA polymerase III su 99.4 1.6E-11 3.5E-16 135.2 17.0 107 272-427 121-227 (614)
136 TIGR01817 nifA Nif-specific re 99.3 5.1E-12 1.1E-16 136.9 12.7 130 272-428 290-426 (534)
137 PRK07940 DNA polymerase III su 99.3 8.4E-12 1.8E-16 130.8 13.4 88 272-405 117-204 (394)
138 PRK12422 chromosomal replicati 99.3 7.3E-12 1.6E-16 133.2 12.9 139 272-452 202-342 (445)
139 PRK08903 DnaA regulatory inact 99.3 2.2E-11 4.8E-16 117.2 14.6 133 272-451 90-224 (227)
140 PF06068 TIP49: TIP49 C-termin 99.3 6.6E-12 1.4E-16 129.3 10.3 108 272-424 278-393 (398)
141 TIGR02442 Cob-chelat-sub cobal 99.3 1.2E-10 2.7E-15 128.8 19.7 158 268-450 123-301 (633)
142 TIGR00368 Mg chelatase-related 99.3 7.7E-11 1.7E-15 127.0 17.2 160 268-450 292-496 (499)
143 TIGR01650 PD_CobS cobaltochela 99.3 9.3E-11 2E-15 119.8 16.9 85 272-369 134-230 (327)
144 PHA02244 ATPase-like protein 99.3 9.9E-11 2.2E-15 121.3 17.2 116 272-402 180-305 (383)
145 COG0714 MoxR-like ATPases [Gen 99.3 2.4E-11 5.2E-16 124.0 12.3 66 25-108 15-80 (329)
146 PRK14088 dnaA chromosomal repl 99.3 1.8E-11 4E-16 130.0 11.2 114 272-429 194-312 (440)
147 PRK06620 hypothetical protein; 99.3 5.3E-11 1.1E-15 115.0 13.1 83 342-450 129-213 (214)
148 TIGR00764 lon_rel lon-related 99.3 6.5E-11 1.4E-15 130.4 15.4 159 264-449 210-387 (608)
149 PRK14087 dnaA chromosomal repl 99.3 5.7E-11 1.2E-15 126.6 14.3 141 272-453 206-348 (450)
150 PRK13407 bchI magnesium chelat 99.3 1.6E-10 3.4E-15 118.8 16.7 158 268-450 125-303 (334)
151 PRK14086 dnaA chromosomal repl 99.2 5.9E-11 1.3E-15 129.7 14.0 116 272-428 377-494 (617)
152 PRK05022 anaerobic nitric oxid 99.2 7.5E-11 1.6E-15 127.3 14.2 131 272-429 281-419 (509)
153 PF00308 Bac_DnaA: Bacterial d 99.2 6.4E-11 1.4E-15 114.7 11.9 116 272-428 97-214 (219)
154 TIGR00678 holB DNA polymerase 99.2 4.8E-11 1E-15 111.8 10.7 86 272-404 96-181 (188)
155 PRK04132 replication factor C 99.2 1.5E-10 3.2E-15 130.8 15.8 107 272-427 630-736 (846)
156 PRK09112 DNA polymerase III su 99.2 1.1E-10 2.4E-15 120.8 13.2 102 272-424 141-242 (351)
157 TIGR02030 BchI-ChlI magnesium 99.2 2.7E-10 5.9E-15 117.2 15.6 158 268-449 128-305 (337)
158 COG1221 PspF Transcriptional r 99.2 6.5E-11 1.4E-15 123.8 10.4 135 268-430 170-309 (403)
159 CHL00081 chlI Mg-protoporyphyr 99.2 3E-10 6.5E-15 117.3 14.9 159 268-450 141-319 (350)
160 PRK13531 regulatory ATPase Rav 99.2 1.9E-10 4.1E-15 122.8 13.4 156 274-447 109-278 (498)
161 KOG1942|consensus 99.2 8.6E-10 1.9E-14 110.4 17.1 97 272-406 296-401 (456)
162 PRK11608 pspF phage shock prot 99.2 2.2E-10 4.8E-15 117.2 12.7 130 272-428 100-238 (326)
163 PRK11388 DNA-binding transcrip 99.2 2.8E-10 6E-15 125.8 14.4 130 272-428 416-552 (638)
164 PRK09087 hypothetical protein; 99.2 4.5E-10 9.8E-15 109.4 13.6 86 342-452 134-221 (226)
165 COG1474 CDC6 Cdc6-related prot 99.1 8.8E-10 1.9E-14 114.7 15.9 139 271-449 122-261 (366)
166 PRK15429 formate hydrogenlyase 99.1 7.7E-10 1.7E-14 123.4 15.3 130 272-428 470-607 (686)
167 PRK10820 DNA-binding transcrip 99.1 4.6E-10 9.9E-15 121.6 11.9 130 272-428 298-435 (520)
168 TIGR02329 propionate_PrpR prop 99.1 1.3E-09 2.7E-14 118.4 15.0 128 272-428 307-448 (526)
169 KOG0735|consensus 99.1 3.2E-09 6.8E-14 116.0 16.7 155 264-451 488-646 (952)
170 cd00009 AAA The AAA+ (ATPases 99.1 7E-10 1.5E-14 95.5 9.5 36 72-107 20-58 (151)
171 PRK15424 propionate catabolism 99.1 1.9E-09 4E-14 117.2 15.0 130 272-428 322-463 (538)
172 PRK10923 glnG nitrogen regulat 99.1 4.1E-10 8.8E-15 119.5 9.7 130 272-428 232-369 (469)
173 TIGR02031 BchD-ChlD magnesium 99.1 1.5E-09 3.2E-14 119.4 13.9 158 272-450 84-255 (589)
174 smart00350 MCM minichromosome 99.1 2.1E-09 4.5E-14 116.3 14.8 165 268-450 297-501 (509)
175 COG2204 AtoC Response regulato 99.0 1.1E-09 2.3E-14 116.5 11.0 134 268-428 232-372 (464)
176 PRK09862 putative ATP-dependen 99.0 9E-09 2E-13 111.1 16.9 162 267-451 290-490 (506)
177 PF07726 AAA_3: ATPase family 99.0 1.6E-10 3.4E-15 103.5 2.8 33 73-105 1-33 (131)
178 TIGR03015 pepcterm_ATPase puta 99.0 2.3E-08 5.1E-13 97.9 18.4 87 344-452 177-265 (269)
179 PF00158 Sigma54_activat: Sigm 99.0 1.7E-10 3.8E-15 107.5 2.0 71 268-352 90-164 (168)
180 PRK11331 5-methylcytosine-spec 99.0 3.4E-09 7.4E-14 112.4 11.4 89 266-367 266-367 (459)
181 PRK11361 acetoacetate metaboli 99.0 2.6E-09 5.6E-14 112.6 10.1 130 272-428 237-374 (457)
182 PRK13765 ATP-dependent proteas 98.9 7.8E-09 1.7E-13 114.3 14.2 123 264-407 219-355 (637)
183 COG0470 HolB ATPase involved i 98.9 4.1E-09 8.9E-14 105.4 10.6 62 272-361 109-170 (325)
184 KOG0743|consensus 98.9 5.3E-09 1.2E-13 109.8 11.7 89 272-370 286-381 (457)
185 TIGR01818 ntrC nitrogen regula 98.9 4.2E-09 9.1E-14 111.4 11.1 130 272-428 228-365 (463)
186 PRK05564 DNA polymerase III su 98.9 6.8E-09 1.5E-13 105.2 11.6 70 272-369 93-162 (313)
187 COG0606 Predicted ATPase with 98.9 7.2E-09 1.6E-13 109.7 11.8 83 268-364 280-384 (490)
188 PRK08058 DNA polymerase III su 98.9 6.9E-09 1.5E-13 106.4 11.4 70 272-369 110-179 (329)
189 PRK07471 DNA polymerase III su 98.9 1.5E-08 3.2E-13 105.5 13.9 70 272-369 141-210 (365)
190 TIGR02915 PEP_resp_reg putativ 98.9 4.1E-09 8.8E-14 111.0 9.5 130 272-428 233-370 (445)
191 COG0542 clpA ATP-binding subun 98.9 1.3E-08 2.7E-13 113.9 13.7 112 268-407 259-372 (786)
192 PRK15115 response regulator Gl 98.9 5.3E-09 1.1E-13 110.1 9.9 130 272-428 228-365 (444)
193 COG3829 RocR Transcriptional r 98.9 1.1E-08 2.4E-13 109.6 12.3 130 272-428 340-477 (560)
194 PF01078 Mg_chelatase: Magnesi 98.9 1.1E-09 2.4E-14 105.3 4.1 83 267-363 102-206 (206)
195 PF10431 ClpB_D2-small: C-term 98.9 5E-09 1.1E-13 85.9 7.3 66 359-433 1-66 (81)
196 PTZ00111 DNA replication licen 98.9 2.7E-08 5.8E-13 112.7 15.0 81 268-362 554-647 (915)
197 TIGR00602 rad24 checkpoint pro 98.9 3.7E-08 8E-13 108.9 15.1 69 343-427 257-328 (637)
198 PRK07399 DNA polymerase III su 98.9 5.2E-08 1.1E-12 99.5 15.1 69 272-369 124-192 (314)
199 COG1239 ChlI Mg-chelatase subu 98.8 7.8E-08 1.7E-12 100.6 16.3 157 268-450 141-319 (423)
200 PF13177 DNA_pol3_delta2: DNA 98.8 1.7E-08 3.7E-13 93.3 10.0 61 272-360 102-162 (162)
201 PRK05707 DNA polymerase III su 98.8 1.4E-08 3E-13 104.3 10.1 70 272-369 106-175 (328)
202 COG0593 DnaA ATPase involved i 98.8 8.6E-08 1.9E-12 100.8 15.4 90 341-455 224-315 (408)
203 smart00763 AAA_PrkA PrkA AAA d 98.8 3.9E-08 8.6E-13 101.8 12.2 113 266-405 231-350 (361)
204 PRK10365 transcriptional regul 98.8 2.6E-08 5.6E-13 104.5 10.0 130 272-428 233-370 (441)
205 KOG0991|consensus 98.8 3.7E-08 8E-13 96.3 10.0 107 273-428 114-220 (333)
206 PF05673 DUF815: Protein of un 98.7 3.6E-07 7.8E-12 90.1 14.0 80 272-369 106-204 (249)
207 KOG2170|consensus 98.7 3.7E-07 8.1E-12 92.0 14.3 62 25-95 73-134 (344)
208 smart00382 AAA ATPases associa 98.7 5.9E-08 1.3E-12 82.2 7.5 37 72-108 3-42 (148)
209 KOG1969|consensus 98.7 3.6E-07 7.8E-12 100.6 15.1 36 72-107 327-362 (877)
210 PRK06964 DNA polymerase III su 98.6 1.1E-07 2.3E-12 98.4 9.2 70 272-369 132-201 (342)
211 COG3604 FhlA Transcriptional r 98.6 2.5E-07 5.3E-12 98.5 11.5 133 269-429 315-455 (550)
212 PRK13406 bchD magnesium chelat 98.6 1E-06 2.2E-11 96.9 16.1 154 268-450 90-247 (584)
213 PRK06871 DNA polymerase III su 98.6 2.7E-07 5.8E-12 94.8 10.7 70 272-369 107-176 (325)
214 PRK07993 DNA polymerase III su 98.6 4.6E-07 9.9E-12 93.4 11.9 70 272-369 108-177 (334)
215 KOG0736|consensus 98.6 2.8E-07 6.1E-12 101.9 10.5 85 271-369 489-573 (953)
216 KOG2680|consensus 98.5 4E-07 8.8E-12 91.8 10.4 115 272-424 288-403 (454)
217 PRK08769 DNA polymerase III su 98.5 5.5E-07 1.2E-11 92.3 10.9 70 272-369 113-182 (319)
218 KOG1514|consensus 98.5 3.6E-06 7.8E-11 92.6 15.6 115 271-429 507-627 (767)
219 PRK08699 DNA polymerase III su 98.4 7.9E-07 1.7E-11 91.3 9.5 70 272-369 113-182 (325)
220 PRK14700 recombination factor 98.4 1E-06 2.2E-11 89.2 9.7 113 325-459 8-121 (300)
221 PF13173 AAA_14: AAA domain 98.4 5.2E-07 1.1E-11 79.7 6.1 33 72-104 3-37 (128)
222 PF00493 MCM: MCM2/3/5 family 98.4 3.5E-07 7.6E-12 94.0 5.7 166 267-450 117-323 (331)
223 KOG2227|consensus 98.4 1.1E-05 2.3E-10 85.7 16.7 115 272-428 256-377 (529)
224 PRK06090 DNA polymerase III su 98.3 1.7E-06 3.7E-11 88.7 9.6 70 272-369 108-177 (319)
225 PF14532 Sigma54_activ_2: Sigm 98.3 2.8E-07 6.1E-12 82.4 2.5 66 272-359 69-138 (138)
226 COG1241 MCM2 Predicted ATPase 98.3 5.7E-06 1.2E-10 92.0 12.2 164 268-450 380-589 (682)
227 KOG0990|consensus 98.3 4.9E-06 1.1E-10 84.6 10.2 110 272-430 131-240 (360)
228 KOG0741|consensus 98.2 5.7E-06 1.2E-10 88.7 10.2 34 72-105 539-572 (744)
229 KOG2035|consensus 98.2 1.9E-05 4E-10 79.3 12.7 92 272-404 127-218 (351)
230 PF13401 AAA_22: AAA domain; P 98.2 1E-05 2.2E-10 70.3 9.5 49 72-127 5-61 (131)
231 PF01637 Arch_ATPase: Archaeal 98.2 3.2E-06 6.9E-11 79.5 6.6 104 272-404 118-224 (234)
232 PF13207 AAA_17: AAA domain; P 98.1 1.9E-06 4.2E-11 74.2 4.0 31 74-104 2-32 (121)
233 KOG0478|consensus 98.1 1.2E-05 2.7E-10 88.2 10.4 121 272-407 526-676 (804)
234 PRK08118 topology modulation p 98.1 3.6E-06 7.8E-11 78.3 5.5 44 72-116 2-45 (167)
235 PRK00131 aroK shikimate kinase 98.0 4.1E-06 8.9E-11 76.1 4.4 34 70-103 3-36 (175)
236 PRK13947 shikimate kinase; Pro 98.0 1.1E-05 2.4E-10 73.9 7.2 32 73-104 3-34 (171)
237 COG0464 SpoVK ATPases of the A 98.0 2.7E-05 5.8E-10 83.8 11.2 82 273-369 77-160 (494)
238 PRK12377 putative replication 98.0 1E-05 2.2E-10 80.2 7.3 24 72-95 102-125 (248)
239 COG0703 AroK Shikimate kinase 98.0 8.4E-06 1.8E-10 76.6 6.1 55 72-129 3-57 (172)
240 PRK07261 topology modulation p 98.0 8.8E-06 1.9E-10 75.8 6.1 45 73-118 2-46 (171)
241 PF05621 TniB: Bacterial TniB 98.0 0.00013 2.8E-09 74.2 15.0 142 268-449 142-285 (302)
242 PF12775 AAA_7: P-loop contain 98.0 4.2E-05 9E-10 76.8 10.6 143 272-430 100-255 (272)
243 PRK00625 shikimate kinase; Pro 98.0 1.3E-05 2.8E-10 75.3 6.2 32 73-104 2-33 (173)
244 PRK08181 transposase; Validate 98.0 1.8E-05 3.9E-10 79.4 7.6 24 72-95 107-130 (269)
245 PF03215 Rad17: Rad17 cell cyc 98.0 8.5E-05 1.8E-09 80.9 13.3 122 272-426 132-267 (519)
246 PRK06526 transposase; Provisio 97.9 4.1E-06 8.9E-11 83.2 2.6 25 71-95 98-122 (254)
247 PRK13948 shikimate kinase; Pro 97.9 1.7E-05 3.7E-10 75.1 6.7 55 70-127 9-63 (182)
248 PF06309 Torsin: Torsin; Inte 97.9 1.2E-05 2.6E-10 72.0 5.0 61 26-95 17-77 (127)
249 PRK13949 shikimate kinase; Pro 97.9 1.4E-05 3.1E-10 74.4 5.5 32 73-104 3-34 (169)
250 PRK07132 DNA polymerase III su 97.9 9E-05 2E-09 75.5 11.6 70 272-369 90-159 (299)
251 PRK05917 DNA polymerase III su 97.9 5.7E-05 1.2E-09 76.6 10.0 61 272-360 95-155 (290)
252 PRK07276 DNA polymerase III su 97.9 4.7E-05 1E-09 77.2 9.4 69 272-369 104-172 (290)
253 PRK03839 putative kinase; Prov 97.9 9.5E-06 2.1E-10 75.4 3.9 31 73-103 2-32 (180)
254 PRK08116 hypothetical protein; 97.9 1.8E-05 3.8E-10 79.2 5.9 33 72-104 115-150 (268)
255 KOG0480|consensus 97.9 4.3E-05 9.2E-10 83.6 8.7 161 272-450 442-640 (764)
256 PRK07952 DNA replication prote 97.9 3.1E-05 6.7E-10 76.7 7.1 32 72-103 100-134 (244)
257 cd00464 SK Shikimate kinase (S 97.9 1.4E-05 3.1E-10 71.5 4.1 31 73-103 1-31 (154)
258 PRK06217 hypothetical protein; 97.8 2.9E-05 6.2E-10 72.7 6.3 36 72-107 2-37 (183)
259 PF10923 DUF2791: P-loop Domai 97.8 0.0042 9E-08 66.1 22.9 145 267-435 233-401 (416)
260 PF13671 AAA_33: AAA domain; P 97.8 1.3E-05 2.8E-10 70.8 3.0 30 74-103 2-31 (143)
261 COG4650 RtcR Sigma54-dependent 97.8 0.00018 3.9E-09 72.9 11.4 37 72-108 209-251 (531)
262 PRK14532 adenylate kinase; Pro 97.8 1.9E-05 4.1E-10 73.8 3.9 30 73-102 2-31 (188)
263 PF12774 AAA_6: Hydrolytic ATP 97.8 0.00049 1.1E-08 67.7 13.9 37 72-108 33-69 (231)
264 PRK05818 DNA polymerase III su 97.8 6.1E-05 1.3E-09 75.2 7.4 65 272-364 88-152 (261)
265 COG3283 TyrR Transcriptional r 97.7 0.00037 8.1E-09 72.3 12.8 129 272-428 293-430 (511)
266 PRK14531 adenylate kinase; Pro 97.7 2.7E-05 5.9E-10 72.9 4.2 32 71-102 2-33 (183)
267 COG3284 AcoR Transcriptional a 97.7 6E-05 1.3E-09 82.5 7.4 130 268-427 404-537 (606)
268 PTZ00088 adenylate kinase 1; P 97.7 2.8E-05 6.1E-10 76.2 4.3 34 70-103 5-38 (229)
269 PF07693 KAP_NTPase: KAP famil 97.7 0.0013 2.9E-08 66.1 16.5 35 70-104 19-59 (325)
270 PRK13946 shikimate kinase; Pro 97.7 3E-05 6.5E-10 72.8 4.0 35 70-104 9-43 (184)
271 cd02020 CMPK Cytidine monophos 97.7 2.9E-05 6.3E-10 68.6 3.7 30 74-103 2-31 (147)
272 COG2607 Predicted ATPase (AAA+ 97.7 0.00055 1.2E-08 67.7 12.7 80 272-369 139-236 (287)
273 PRK05057 aroK shikimate kinase 97.7 9E-05 1.9E-09 69.1 6.9 35 71-105 4-38 (172)
274 COG1484 DnaC DNA replication p 97.7 5.6E-05 1.2E-09 75.2 5.3 35 70-104 104-141 (254)
275 PRK14530 adenylate kinase; Pro 97.7 3.8E-05 8.3E-10 73.7 4.0 31 72-102 4-34 (215)
276 TIGR01359 UMP_CMP_kin_fam UMP- 97.7 3.9E-05 8.4E-10 71.0 3.9 29 74-102 2-30 (183)
277 PRK03731 aroL shikimate kinase 97.7 4.4E-05 9.5E-10 70.1 4.2 33 72-104 3-35 (171)
278 cd01428 ADK Adenylate kinase ( 97.7 3.9E-05 8.5E-10 71.3 3.9 31 73-103 1-31 (194)
279 cd02021 GntK Gluconate kinase 97.6 4.1E-05 8.8E-10 68.7 3.7 31 74-104 2-32 (150)
280 TIGR01313 therm_gnt_kin carboh 97.6 4.3E-05 9.3E-10 69.6 3.4 31 74-104 1-31 (163)
281 PRK15455 PrkA family serine pr 97.6 4.5E-05 9.8E-10 83.5 4.0 90 5-104 41-137 (644)
282 PF00406 ADK: Adenylate kinase 97.6 0.00016 3.4E-09 65.4 6.7 25 76-100 1-25 (151)
283 PLN02199 shikimate kinase 97.5 0.00013 2.7E-09 74.3 6.0 56 72-129 103-158 (303)
284 PRK06547 hypothetical protein; 97.5 7.9E-05 1.7E-09 69.9 4.3 33 72-104 16-48 (172)
285 PRK08154 anaerobic benzoate ca 97.5 0.0004 8.6E-09 70.8 9.7 35 70-104 132-166 (309)
286 COG0563 Adk Adenylate kinase a 97.5 7.5E-05 1.6E-09 70.5 3.5 30 73-104 2-31 (178)
287 COG5271 MDN1 AAA ATPase contai 97.5 0.00032 6.9E-09 83.2 9.1 37 72-108 1544-1580(4600)
288 PRK02496 adk adenylate kinase; 97.5 8.7E-05 1.9E-09 69.1 3.8 31 72-102 2-32 (184)
289 PRK14528 adenylate kinase; Pro 97.5 9.5E-05 2.1E-09 69.7 4.0 31 72-102 2-32 (186)
290 cd00227 CPT Chloramphenicol (C 97.5 7.4E-05 1.6E-09 69.3 3.2 32 73-104 4-35 (175)
291 cd01128 rho_factor Transcripti 97.5 0.00037 8E-09 69.2 8.0 27 72-98 17-43 (249)
292 PRK06762 hypothetical protein; 97.4 0.00013 2.8E-09 66.7 4.3 33 71-103 2-34 (166)
293 TIGR01351 adk adenylate kinase 97.4 0.00011 2.3E-09 70.4 3.8 29 74-102 2-30 (210)
294 TIGR01360 aden_kin_iso1 adenyl 97.4 0.0001 2.2E-09 68.0 3.5 30 73-102 5-34 (188)
295 COG1618 Predicted nucleotide k 97.4 0.00038 8.2E-09 65.1 6.9 27 70-96 4-30 (179)
296 PRK00279 adk adenylate kinase; 97.4 0.00014 3E-09 69.8 4.1 30 73-102 2-31 (215)
297 TIGR01618 phage_P_loop phage n 97.4 0.00022 4.7E-09 69.7 5.3 34 70-105 11-44 (220)
298 COG5271 MDN1 AAA ATPase contai 97.4 0.0015 3.3E-08 77.8 12.5 39 69-109 888-926 (4600)
299 PLN02200 adenylate kinase fami 97.4 0.00017 3.8E-09 70.7 4.5 31 70-100 42-72 (234)
300 PRK14021 bifunctional shikimat 97.4 0.00033 7.1E-09 76.8 6.9 65 72-139 7-71 (542)
301 PRK14527 adenylate kinase; Pro 97.4 0.00013 2.8E-09 68.6 3.3 31 71-101 6-36 (191)
302 PF05729 NACHT: NACHT domain 97.4 0.0018 4E-08 57.7 10.6 22 74-95 3-24 (166)
303 KOG1970|consensus 97.3 0.0052 1.1E-07 66.9 15.1 31 73-103 112-142 (634)
304 PF01695 IstB_IS21: IstB-like 97.3 0.00017 3.7E-09 67.9 3.4 33 72-104 48-83 (178)
305 PRK04182 cytidylate kinase; Pr 97.3 0.00017 3.7E-09 66.0 3.2 29 73-101 2-30 (180)
306 KOG3347|consensus 97.3 0.0002 4.4E-09 66.1 3.5 32 72-103 8-39 (176)
307 PHA02530 pseT polynucleotide k 97.3 0.0002 4.3E-09 71.7 3.9 33 71-103 2-35 (300)
308 PRK04040 adenylate kinase; Pro 97.3 0.00026 5.7E-09 67.2 4.1 30 71-100 2-33 (188)
309 PRK00091 miaA tRNA delta(2)-is 97.2 0.00025 5.3E-09 72.6 4.0 37 71-107 4-40 (307)
310 COG3839 MalK ABC-type sugar tr 97.2 0.00088 1.9E-08 69.3 7.9 34 74-107 32-67 (338)
311 COG1102 Cmk Cytidylate kinase 97.2 0.00026 5.6E-09 66.2 3.5 28 74-101 3-30 (179)
312 PF13238 AAA_18: AAA domain; P 97.2 0.00027 5.9E-09 60.6 3.4 22 74-95 1-22 (129)
313 PF00910 RNA_helicase: RNA hel 97.2 0.00027 5.8E-09 60.8 3.2 23 74-96 1-23 (107)
314 PLN02674 adenylate kinase 97.2 0.00029 6.3E-09 69.8 3.9 30 72-101 32-61 (244)
315 PF01745 IPT: Isopentenyl tran 97.2 0.00032 7E-09 68.3 3.9 34 74-107 4-37 (233)
316 PRK01184 hypothetical protein; 97.2 0.00031 6.6E-09 65.4 3.7 29 73-102 3-31 (184)
317 PF14516 AAA_35: AAA-like doma 97.2 0.0067 1.5E-07 62.5 13.8 36 72-107 32-70 (331)
318 PLN02165 adenylate isopentenyl 97.2 0.00042 9E-09 71.6 4.6 36 72-107 44-79 (334)
319 TIGR02173 cyt_kin_arch cytidyl 97.1 0.00031 6.8E-09 63.8 3.2 29 74-102 3-31 (171)
320 PRK09376 rho transcription ter 97.1 0.00081 1.8E-08 71.0 6.6 27 72-98 170-196 (416)
321 PRK14526 adenylate kinase; Pro 97.1 0.00042 9.1E-09 67.1 4.0 29 73-101 2-30 (211)
322 TIGR00767 rho transcription te 97.1 0.0012 2.6E-08 69.9 7.6 27 72-98 169-195 (415)
323 PRK08233 hypothetical protein; 97.1 0.00049 1.1E-08 63.2 4.2 34 72-105 4-38 (182)
324 COG3842 PotA ABC-type spermidi 97.1 0.00055 1.2E-08 71.2 4.9 35 74-108 34-70 (352)
325 COG0324 MiaA tRNA delta(2)-iso 97.1 0.00043 9.4E-09 70.7 3.9 37 71-107 3-39 (308)
326 COG1126 GlnQ ABC-type polar am 97.1 0.0016 3.4E-08 63.7 7.4 33 72-104 29-63 (240)
327 PRK04220 2-phosphoglycerate ki 97.1 0.0003 6.5E-09 71.7 2.4 66 33-98 51-119 (301)
328 PHA00729 NTP-binding motif con 97.1 0.00036 7.8E-09 68.4 2.9 26 72-97 18-43 (226)
329 PRK06835 DNA replication prote 97.1 0.00039 8.5E-09 71.7 3.3 32 72-103 184-218 (329)
330 PRK08939 primosomal protein Dn 97.0 0.00047 1E-08 70.5 3.6 34 71-104 156-192 (306)
331 PRK10078 ribose 1,5-bisphospho 97.0 0.00054 1.2E-08 64.3 3.6 31 72-102 3-33 (186)
332 PLN02459 probable adenylate ki 97.0 0.00062 1.3E-08 68.1 4.2 31 72-102 30-60 (261)
333 PRK14529 adenylate kinase; Pro 97.0 0.00053 1.1E-08 67.1 3.4 29 73-101 2-30 (223)
334 PF13191 AAA_16: AAA ATPase do 97.0 0.00062 1.3E-08 62.2 3.7 58 37-107 3-63 (185)
335 COG1117 PstB ABC-type phosphat 97.0 0.0034 7.3E-08 61.4 8.8 24 72-95 34-57 (253)
336 COG1936 Predicted nucleotide k 97.0 0.00055 1.2E-08 64.5 3.2 30 73-103 2-31 (180)
337 PRK06696 uridine kinase; Valid 97.0 0.00077 1.7E-08 65.2 4.3 36 72-107 23-61 (223)
338 KOG0058|consensus 97.0 0.0011 2.4E-08 73.9 5.9 42 266-315 614-657 (716)
339 cd02019 NK Nucleoside/nucleoti 97.0 0.00076 1.6E-08 53.6 3.4 31 74-104 2-33 (69)
340 PRK13951 bifunctional shikimat 96.9 0.0014 3E-08 71.1 6.5 48 73-123 2-49 (488)
341 TIGR02688 conserved hypothetic 96.9 0.0026 5.6E-08 67.8 8.1 23 72-94 210-232 (449)
342 cd02027 APSK Adenosine 5'-phos 96.9 0.0023 5E-08 58.2 6.6 31 74-104 2-35 (149)
343 PF01202 SKI: Shikimate kinase 96.9 0.0011 2.3E-08 60.8 4.3 25 80-104 1-25 (158)
344 PRK09183 transposase/IS protei 96.9 0.00075 1.6E-08 67.2 3.5 24 72-95 103-126 (259)
345 TIGR00174 miaA tRNA isopenteny 96.9 0.00086 1.9E-08 68.0 3.8 35 74-108 2-36 (287)
346 PRK05541 adenylylsulfate kinas 96.8 0.00082 1.8E-08 62.2 3.2 27 70-96 6-32 (176)
347 TIGR03574 selen_PSTK L-seryl-t 96.8 0.0011 2.3E-08 65.1 4.3 30 74-103 2-34 (249)
348 PF10443 RNA12: RNA12 protein; 96.8 0.068 1.5E-06 57.0 17.8 34 74-109 20-55 (431)
349 COG3854 SpoIIIAA ncharacterize 96.8 0.0026 5.7E-08 62.8 6.8 24 72-95 138-161 (308)
350 COG4088 Predicted nucleotide k 96.8 0.0017 3.8E-08 63.0 5.4 53 74-128 4-59 (261)
351 KOG3354|consensus 96.8 0.00091 2E-08 62.2 3.3 33 72-104 13-45 (191)
352 PRK13808 adenylate kinase; Pro 96.8 0.00097 2.1E-08 69.0 3.9 30 73-102 2-31 (333)
353 PLN02840 tRNA dimethylallyltra 96.8 0.0013 2.9E-08 69.9 5.0 36 72-107 22-57 (421)
354 PF13521 AAA_28: AAA domain; P 96.8 0.00088 1.9E-08 61.2 3.1 33 74-107 2-34 (163)
355 PRK06921 hypothetical protein; 96.8 0.00089 1.9E-08 67.0 3.3 24 72-95 118-141 (266)
356 PRK12723 flagellar biosynthesi 96.8 0.0062 1.3E-07 64.3 9.4 26 70-95 173-198 (388)
357 TIGR02868 CydC thiol reductant 96.7 0.0044 9.5E-08 67.2 8.3 33 72-104 362-396 (529)
358 PF01583 APS_kinase: Adenylyls 96.7 0.0022 4.7E-08 59.6 5.1 38 71-108 2-42 (156)
359 PRK12339 2-phosphoglycerate ki 96.7 0.0014 3E-08 62.8 3.9 30 71-100 3-32 (197)
360 PRK03846 adenylylsulfate kinas 96.7 0.0032 7E-08 59.7 6.3 38 70-107 23-63 (198)
361 PRK11545 gntK gluconate kinase 96.7 0.00098 2.1E-08 61.6 2.6 28 77-104 1-28 (163)
362 cd01120 RecA-like_NTPases RecA 96.7 0.0018 4E-08 57.1 4.3 31 74-104 2-35 (165)
363 COG1120 FepC ABC-type cobalami 96.7 0.005 1.1E-07 61.6 7.8 36 72-107 29-66 (258)
364 PLN02748 tRNA dimethylallyltra 96.7 0.0014 3E-08 70.7 4.1 38 70-107 21-58 (468)
365 cd02022 DPCK Dephospho-coenzym 96.7 0.0017 3.6E-08 60.7 3.9 29 74-103 2-30 (179)
366 TIGR00017 cmk cytidylate kinas 96.6 0.0017 3.8E-08 63.0 4.0 30 72-101 3-32 (217)
367 TIGR00150 HI0065_YjeE ATPase, 96.6 0.0017 3.8E-08 58.7 3.7 36 72-108 23-58 (133)
368 cd02024 NRK1 Nicotinamide ribo 96.6 0.0015 3.3E-08 62.2 3.5 31 74-104 2-33 (187)
369 TIGR02322 phosphon_PhnN phosph 96.6 0.0014 3.1E-08 60.5 3.2 25 73-97 3-27 (179)
370 PRK05480 uridine/cytidine kina 96.6 0.0027 5.8E-08 60.4 4.9 26 71-96 6-31 (209)
371 cd02023 UMPK Uridine monophosp 96.6 0.0018 4E-08 61.0 3.7 22 74-95 2-23 (198)
372 KOG0477|consensus 96.6 0.0041 8.9E-08 68.4 6.6 61 37-101 452-512 (854)
373 PRK00889 adenylylsulfate kinas 96.6 0.0025 5.5E-08 58.8 4.4 33 72-104 5-40 (175)
374 KOG0056|consensus 96.6 0.037 8E-07 60.0 13.4 46 59-104 548-599 (790)
375 PRK08356 hypothetical protein; 96.6 0.0023 4.9E-08 60.6 4.1 29 72-101 6-34 (195)
376 PRK09825 idnK D-gluconate kina 96.6 0.0017 3.8E-08 60.9 3.2 28 73-100 5-32 (176)
377 PRK14738 gmk guanylate kinase; 96.6 0.0019 4E-08 62.0 3.5 31 64-94 6-36 (206)
378 PRK11174 cysteine/glutathione 96.6 0.0082 1.8E-07 65.9 9.0 35 72-107 377-413 (588)
379 cd00071 GMPK Guanosine monopho 96.5 0.002 4.3E-08 58.0 3.4 25 74-98 2-26 (137)
380 PRK14974 cell division protein 96.5 0.0084 1.8E-07 62.2 8.4 35 70-104 139-176 (336)
381 PRK14730 coaE dephospho-CoA ki 96.5 0.0022 4.7E-08 61.2 3.8 31 73-103 3-33 (195)
382 PHA02624 large T antigen; Prov 96.5 0.0026 5.5E-08 70.3 4.7 34 73-106 433-466 (647)
383 KOG0482|consensus 96.5 0.011 2.3E-07 64.0 9.1 164 268-450 436-635 (721)
384 PRK12338 hypothetical protein; 96.5 0.002 4.3E-08 66.3 3.6 30 71-100 4-33 (319)
385 TIGR03263 guanyl_kin guanylate 96.5 0.0017 3.6E-08 59.9 2.7 26 73-98 3-28 (180)
386 PRK14729 miaA tRNA delta(2)-is 96.5 0.0021 4.6E-08 65.6 3.6 35 72-107 5-39 (300)
387 PF00485 PRK: Phosphoribulokin 96.5 0.0022 4.8E-08 60.5 3.5 23 74-96 2-24 (194)
388 COG3267 ExeA Type II secretory 96.5 0.057 1.2E-06 54.0 13.4 52 344-405 185-236 (269)
389 COG2274 SunT ABC-type bacterio 96.5 0.013 2.9E-07 66.3 10.2 36 73-108 501-538 (709)
390 PRK13975 thymidylate kinase; P 96.5 0.003 6.5E-08 59.1 4.3 27 72-98 3-29 (196)
391 PRK00081 coaE dephospho-CoA ki 96.5 0.0027 5.9E-08 60.2 4.0 31 72-103 3-33 (194)
392 PRK12608 transcription termina 96.5 0.0076 1.7E-07 63.3 7.6 26 72-97 134-159 (380)
393 KOG0055|consensus 96.5 0.016 3.5E-07 68.3 10.9 37 72-108 1017-1055(1228)
394 cd03259 ABC_Carb_Solutes_like 96.5 0.011 2.3E-07 56.3 8.0 24 72-95 27-50 (213)
395 COG1067 LonB Predicted ATP-dep 96.4 0.018 4E-07 64.4 10.8 166 262-452 216-398 (647)
396 cd01124 KaiC KaiC is a circadi 96.4 0.0062 1.4E-07 56.1 6.1 31 74-104 2-35 (187)
397 PF13245 AAA_19: Part of AAA d 96.4 0.0048 1E-07 50.3 4.5 22 74-95 13-35 (76)
398 PF00448 SRP54: SRP54-type pro 96.4 0.0026 5.7E-08 60.9 3.4 25 71-95 1-25 (196)
399 PRK00300 gmk guanylate kinase; 96.4 0.0027 5.9E-08 59.9 3.5 25 72-96 6-30 (205)
400 PRK00023 cmk cytidylate kinase 96.4 0.0026 5.5E-08 62.1 3.3 30 72-101 5-34 (225)
401 PRK11160 cysteine/glutathione 96.4 0.025 5.5E-07 62.3 11.3 35 72-106 367-403 (574)
402 TIGR03265 PhnT2 putative 2-ami 96.4 0.0071 1.5E-07 62.9 6.6 34 72-105 31-66 (353)
403 KOG0481|consensus 96.3 0.0027 5.7E-08 68.5 3.4 84 272-368 428-523 (729)
404 TIGR00235 udk uridine kinase. 96.3 0.0031 6.7E-08 60.1 3.5 24 73-96 8-31 (207)
405 PRK10536 hypothetical protein; 96.3 0.0075 1.6E-07 60.4 6.3 35 73-107 76-114 (262)
406 PRK05800 cobU adenosylcobinami 96.3 0.0039 8.4E-08 58.4 4.0 32 73-104 3-34 (170)
407 TIGR00455 apsK adenylylsulfate 96.3 0.0079 1.7E-07 56.1 6.1 37 71-107 18-57 (184)
408 PRK14737 gmk guanylate kinase; 96.3 0.0031 6.7E-08 59.8 3.3 25 71-95 4-28 (186)
409 KOG1808|consensus 96.3 0.0042 9.1E-08 75.6 5.1 36 73-108 442-477 (1856)
410 PRK13643 cbiO cobalt transport 96.3 0.016 3.5E-07 58.2 8.6 24 72-95 33-56 (288)
411 PF03266 NTPase_1: NTPase; In 96.3 0.0032 6.9E-08 58.9 3.2 27 73-99 1-30 (168)
412 cd02028 UMPK_like Uridine mono 96.3 0.0043 9.3E-08 58.3 4.1 34 74-107 2-38 (179)
413 PRK11607 potG putrescine trans 96.2 0.0087 1.9E-07 62.9 6.6 24 72-95 46-69 (377)
414 PF06414 Zeta_toxin: Zeta toxi 96.2 0.0041 9E-08 59.0 3.8 40 69-108 13-53 (199)
415 PF02367 UPF0079: Uncharacteri 96.2 0.0036 7.9E-08 55.9 3.1 35 72-107 16-50 (123)
416 COG1373 Predicted ATPase (AAA+ 96.2 0.023 5E-07 60.2 9.7 30 73-102 39-68 (398)
417 TIGR00554 panK_bact pantothena 96.2 0.0058 1.3E-07 62.1 4.9 65 19-96 23-87 (290)
418 PRK11650 ugpC glycerol-3-phosp 96.2 0.011 2.4E-07 61.6 7.1 23 73-95 32-54 (356)
419 cd03115 SRP The signal recogni 96.2 0.0059 1.3E-07 56.2 4.6 33 74-106 3-38 (173)
420 TIGR03375 type_I_sec_LssB type 96.2 0.029 6.4E-07 63.0 10.8 35 72-106 492-528 (694)
421 cd01672 TMPK Thymidine monopho 96.2 0.0061 1.3E-07 56.2 4.4 30 74-103 3-35 (200)
422 PF07931 CPT: Chloramphenicol 96.2 0.0063 1.4E-07 57.5 4.5 32 74-105 4-35 (174)
423 PTZ00265 multidrug resistance 96.2 0.025 5.3E-07 69.0 10.7 26 72-97 1195-1220(1466)
424 PRK11000 maltose/maltodextrin 96.1 0.011 2.4E-07 61.8 6.7 24 72-95 30-53 (369)
425 PRK13632 cbiO cobalt transport 96.1 0.024 5.1E-07 56.4 8.8 24 72-95 36-59 (271)
426 TIGR00152 dephospho-CoA kinase 96.1 0.0049 1.1E-07 57.8 3.7 30 74-103 2-31 (188)
427 PF10662 PduV-EutP: Ethanolami 96.1 0.0036 7.7E-08 57.4 2.6 23 72-94 2-24 (143)
428 PRK12337 2-phosphoglycerate ki 96.1 0.0048 1E-07 66.4 3.9 35 70-104 254-289 (475)
429 TIGR01526 nadR_NMN_Atrans nico 96.1 0.0037 7.9E-08 64.4 3.0 39 72-110 163-201 (325)
430 PF13086 AAA_11: AAA domain; P 96.1 0.0043 9.4E-08 58.2 3.2 22 74-95 20-41 (236)
431 PRK13650 cbiO cobalt transport 96.1 0.023 5E-07 56.8 8.5 24 72-95 34-57 (279)
432 PRK13477 bifunctional pantoate 96.1 0.0049 1.1E-07 67.2 3.8 32 70-101 283-314 (512)
433 cd03281 ABC_MSH5_euk MutS5 hom 96.1 0.01 2.2E-07 57.3 5.6 22 72-93 30-51 (213)
434 PRK09518 bifunctional cytidyla 96.1 0.005 1.1E-07 69.7 3.9 32 73-104 3-34 (712)
435 PRK06761 hypothetical protein; 96.1 0.0058 1.2E-07 61.9 4.0 32 73-104 5-36 (282)
436 PRK08485 DNA polymerase III su 96.1 0.021 4.5E-07 55.3 7.5 92 273-405 55-158 (206)
437 COG0529 CysC Adenylylsulfate k 96.0 0.012 2.5E-07 56.0 5.7 38 71-108 23-63 (197)
438 PRK13647 cbiO cobalt transport 96.0 0.021 4.6E-07 57.0 7.9 24 72-95 32-55 (274)
439 COG4178 ABC-type uncharacteriz 96.0 0.033 7.2E-07 61.8 10.0 24 72-95 420-443 (604)
440 PRK08099 bifunctional DNA-bind 96.0 0.0068 1.5E-07 64.2 4.6 36 72-107 220-255 (399)
441 PRK05439 pantothenate kinase; 96.0 0.0083 1.8E-07 61.6 5.0 26 71-96 86-111 (311)
442 PRK13657 cyclic beta-1,2-gluca 96.0 0.028 6E-07 61.9 9.4 35 72-106 362-398 (588)
443 PRK14733 coaE dephospho-CoA ki 96.0 0.0063 1.4E-07 58.8 3.8 33 71-103 6-38 (204)
444 TIGR03499 FlhF flagellar biosy 96.0 0.0079 1.7E-07 60.6 4.6 37 70-106 193-234 (282)
445 cd01129 PulE-GspE PulE/GspE Th 96.0 0.018 4E-07 57.5 7.1 25 72-96 81-105 (264)
446 TIGR01186 proV glycine betaine 96.0 0.013 2.9E-07 61.3 6.3 24 72-95 20-43 (363)
447 PRK07667 uridine kinase; Provi 95.9 0.0093 2E-07 56.5 4.6 35 73-107 19-56 (193)
448 PRK13644 cbiO cobalt transport 95.9 0.034 7.4E-07 55.5 8.8 24 72-95 29-52 (274)
449 PF00625 Guanylate_kin: Guanyl 95.9 0.01 2.2E-07 55.4 4.8 28 72-99 3-30 (183)
450 PRK13637 cbiO cobalt transport 95.9 0.027 5.8E-07 56.7 7.9 24 72-95 34-57 (287)
451 PRK13634 cbiO cobalt transport 95.9 0.039 8.5E-07 55.5 9.1 24 72-95 34-57 (290)
452 cd01131 PilT Pilus retraction 95.9 0.0062 1.3E-07 58.0 3.1 24 73-96 3-26 (198)
453 PRK13652 cbiO cobalt transport 95.9 0.024 5.2E-07 56.6 7.4 24 72-95 31-54 (277)
454 COG4148 ModC ABC-type molybdat 95.8 0.013 2.7E-07 59.5 5.3 38 72-109 25-64 (352)
455 PF03193 DUF258: Protein of un 95.8 0.013 2.7E-07 54.8 4.8 24 72-95 36-59 (161)
456 PRK00771 signal recognition pa 95.8 0.0094 2E-07 63.9 4.5 38 70-107 94-134 (437)
457 COG3265 GntK Gluconate kinase 95.8 0.0057 1.2E-07 56.5 2.4 28 77-104 1-28 (161)
458 COG4988 CydD ABC-type transpor 95.8 0.011 2.4E-07 64.7 4.9 46 72-117 348-404 (559)
459 TIGR00064 ftsY signal recognit 95.8 0.016 3.4E-07 58.3 5.7 37 70-106 71-110 (272)
460 cd02025 PanK Pantothenate kina 95.8 0.011 2.5E-07 57.4 4.5 23 74-96 2-24 (220)
461 TIGR03575 selen_PSTK_euk L-ser 95.7 0.034 7.4E-07 57.8 8.2 35 74-108 2-40 (340)
462 PRK09270 nucleoside triphospha 95.7 0.0078 1.7E-07 58.4 3.3 25 72-96 34-58 (229)
463 cd01130 VirB11-like_ATPase Typ 95.7 0.0072 1.6E-07 56.8 3.0 25 72-96 26-50 (186)
464 cd01673 dNK Deoxyribonucleosid 95.7 0.0085 1.8E-07 56.0 3.3 27 74-100 2-28 (193)
465 PF08477 Miro: Miro-like prote 95.7 0.0088 1.9E-07 50.9 3.1 22 74-95 2-23 (119)
466 TIGR01193 bacteriocin_ABC ABC- 95.7 0.055 1.2E-06 61.0 10.2 36 72-107 501-538 (708)
467 TIGR02782 TrbB_P P-type conjug 95.7 0.011 2.4E-07 60.2 4.1 24 72-95 133-156 (299)
468 COG1132 MdlB ABC-type multidru 95.6 0.058 1.3E-06 59.2 9.9 36 72-107 356-393 (567)
469 PTZ00301 uridine kinase; Provi 95.6 0.0087 1.9E-07 58.0 3.0 22 74-95 6-27 (210)
470 COG0194 Gmk Guanylate kinase [ 95.6 0.013 2.9E-07 55.9 4.0 33 73-106 6-38 (191)
471 PRK10416 signal recognition pa 95.5 0.017 3.6E-07 59.5 4.7 35 70-104 113-150 (318)
472 PRK11889 flhF flagellar biosyn 95.5 0.016 3.5E-07 61.6 4.6 26 70-95 240-265 (436)
473 COG2804 PulE Type II secretory 95.5 0.029 6.2E-07 60.8 6.6 28 74-101 261-288 (500)
474 PRK13851 type IV secretion sys 95.5 0.0087 1.9E-07 62.3 2.7 25 72-96 163-187 (344)
475 PRK14731 coaE dephospho-CoA ki 95.5 0.013 2.8E-07 56.3 3.7 30 73-103 7-36 (208)
476 TIGR02237 recomb_radB DNA repa 95.5 0.017 3.6E-07 54.8 4.3 34 72-105 13-49 (209)
477 PF13479 AAA_24: AAA domain 95.5 0.0096 2.1E-07 57.3 2.7 31 71-105 3-34 (213)
478 TIGR01425 SRP54_euk signal rec 95.4 0.021 4.6E-07 61.1 5.4 38 70-107 99-139 (429)
479 PRK10646 ADP-binding protein; 95.4 0.014 3E-07 54.1 3.5 35 73-108 30-64 (153)
480 COG0572 Udk Uridine kinase [Nu 95.4 0.015 3.3E-07 56.8 3.9 25 74-98 11-35 (218)
481 PF08433 KTI12: Chromatin asso 95.4 0.026 5.6E-07 56.8 5.7 30 74-103 4-36 (270)
482 PF06745 KaiC: KaiC; InterPro 95.4 0.035 7.5E-07 53.4 6.4 33 72-104 20-56 (226)
483 PF00437 T2SE: Type II/IV secr 95.4 0.012 2.6E-07 58.2 3.3 25 72-96 128-152 (270)
484 PRK14722 flhF flagellar biosyn 95.4 0.012 2.5E-07 62.0 3.2 24 72-95 138-161 (374)
485 COG0488 Uup ATPase components 95.4 0.037 8E-07 60.8 7.3 45 72-116 349-393 (530)
486 KOG1968|consensus 95.4 0.073 1.6E-06 61.5 9.9 35 74-108 360-394 (871)
487 TIGR00041 DTMP_kinase thymidyl 95.4 0.012 2.6E-07 54.9 3.1 25 73-97 5-29 (195)
488 PF04851 ResIII: Type III rest 95.3 0.028 6.2E-07 50.7 5.3 32 72-103 26-57 (184)
489 PRK05537 bifunctional sulfate 95.3 0.011 2.5E-07 65.3 3.2 35 71-105 392-430 (568)
490 TIGR03796 NHPM_micro_ABC1 NHPM 95.3 0.038 8.3E-07 62.2 7.4 36 72-107 506-543 (710)
491 cd00820 PEPCK_HprK Phosphoenol 95.3 0.012 2.6E-07 51.4 2.6 21 72-92 16-36 (107)
492 PRK09536 btuD corrinoid ABC tr 95.3 0.022 4.8E-07 60.4 5.1 23 73-95 31-53 (402)
493 TIGR01846 type_I_sec_HlyB type 95.3 0.092 2E-06 59.1 10.3 36 72-107 484-521 (694)
494 smart00072 GuKc Guanylate kina 95.3 0.018 3.9E-07 54.0 3.9 24 72-95 3-26 (184)
495 cd03284 ABC_MutS1 MutS1 homolo 95.3 0.045 9.7E-07 53.0 6.8 22 72-93 31-52 (216)
496 PF12846 AAA_10: AAA-like doma 95.3 0.02 4.3E-07 56.1 4.4 33 72-104 2-37 (304)
497 cd00046 DEXDc DEAD-like helica 95.3 0.015 3.3E-07 49.0 3.1 25 72-96 1-25 (144)
498 COG4175 ProV ABC-type proline/ 95.3 0.07 1.5E-06 55.1 8.3 83 262-352 172-270 (386)
499 TIGR01663 PNK-3'Pase polynucle 95.3 0.015 3.1E-07 63.8 3.7 35 69-103 367-401 (526)
500 TIGR02203 MsbA_lipidA lipid A 95.2 0.037 8.1E-07 60.4 6.8 34 72-105 359-394 (571)
No 1
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-90 Score=688.43 Aligned_cols=430 Identities=57% Similarity=0.889 Sum_probs=407.8
Q ss_pred hHhhhhhhcchhHHHHhhhhhcccccccCCCCCCccccccCCCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCcee
Q psy2406 29 NNLRNKFGIRKAILKASVYIDAPNTRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFT 108 (464)
Q Consensus 29 ~~~l~~~~igq~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~ 108 (464)
-..|.+|.|||..++.+|++++++..... ..++.+++++.|+|||++||||+|||++||.||+..|+||+.+.++.|+
T Consensus 10 V~eLd~yIIGQ~~AKkaVAIALRNR~RR~--qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfT 87 (444)
T COG1220 10 VSELDRYIIGQDEAKKAVAIALRNRWRRM--QLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFT 87 (444)
T ss_pred HHHHHhHhcCcHHHHHHHHHHHHHHHHHH--hcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeee
Confidence 35688999999999999999999877665 3556789999999999999999999999999999999999999999999
Q ss_pred eccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCc-ccchhHHHHHHHHHh
Q psy2406 109 EVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNE-NNNISTRQIFRKRLR 187 (464)
Q Consensus 109 ~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 187 (464)
+.||||.|+|+|+++|++.|+.++|++.|++++.+|++.+|+|+++.|+|++.+ .+++.++ .+...+|+.||+++|
T Consensus 88 EVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~---~~g~~~~~~~~~~~r~~~rkkLr 164 (444)
T COG1220 88 EVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKN---FWGQSENKQESSATREKFRKKLR 164 (444)
T ss_pred ecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc---ccCcCcccccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998643 1233332 245789999999999
Q ss_pred cCCCCCcEEEEEecCC-CCcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy2406 188 EGALDNKEIEIELNDT-GPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKA 266 (464)
Q Consensus 188 ~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eA 266 (464)
+|.|||++|+|++..+ +|+++.++++||++|+.|+.+||+++.|+++|.+||+||||++.|.++||++|+|.+++.++|
T Consensus 165 ~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~eA 244 (444)
T COG1220 165 EGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQEA 244 (444)
T ss_pred cCCCCccEEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 9999999999999886 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhh
Q psy2406 267 INNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPEL 346 (464)
Q Consensus 267 v~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEf 346 (464)
+.++|+.+|||||||||++.+.+. +++|+|++|||..|||++||.+|++++|.+.|+|++||++|+|+..+|+|+.|||
T Consensus 245 i~~aE~~GIvFIDEIDKIa~~~~~-g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPEL 323 (444)
T COG1220 245 IDAAEQNGIVFIDEIDKIAKRGGS-GGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPEL 323 (444)
T ss_pred HHHHHhcCeEEEehhhHHHhcCCC-CCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhh
Confidence 999999999999999999987763 4559999999999999999999999999999999999999999999999999999
Q ss_pred hccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHH
Q psy2406 347 QGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 426 (464)
Q Consensus 347 l~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~ 426 (464)
.||||+.|++++||.+++.+||+.+..++.+||+++++.+|+.|.|+++|++.||+.++..|.+.++.|||+|.+++|++
T Consensus 324 QGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErl 403 (444)
T COG1220 324 QGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERL 403 (444)
T ss_pred cCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCc---eeecHHHHHhHhCCCCCCCCCCCcCC
Q psy2406 427 LEEVSFNSNNIS---LLVDADYVNSRLGDLSINEDLSRYVL 464 (464)
Q Consensus 427 l~~~l~~~~~~~---v~I~~e~v~~~~~~~~~~~d~~~~~~ 464 (464)
|++.+|+.|+.. ++||+++|+..++.++.+.|||||||
T Consensus 404 LediSFeA~d~~g~~v~Id~~yV~~~l~~l~~n~DLsryIL 444 (444)
T COG1220 404 LEDISFEAPDMSGQKVTIDAEYVEEKLGDLVANEDLSRFIL 444 (444)
T ss_pred HHHhCccCCcCCCCeEEEcHHHHHHHHHHHhcccchhhhhC
Confidence 999999999754 99999999999999999999999997
No 2
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=100.00 E-value=7.4e-79 Score=629.94 Aligned_cols=430 Identities=55% Similarity=0.871 Sum_probs=393.3
Q ss_pred hhHhhhhhhcchhHHHHhhhhhccc--ccccCCCCCCccccccCCCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecC
Q psy2406 28 ANNLRNKFGIRKAILKASVYIDAPN--TRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEAT 105 (464)
Q Consensus 28 ~~~~l~~~~igq~~~~~~v~~~~~~--~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s 105 (464)
..+.|.+|++||+.++.+++.++.. .|.++ ++.++++..|++|||+||||||||++|++||+.+++||+.+|++
T Consensus 6 I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~----~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat 81 (441)
T TIGR00390 6 IVAELDKYIIGQDNAKKSVAIALRNRYRRSQL----NEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 81 (441)
T ss_pred HHHHHhhhccCHHHHHHHHHHHHHhhhhhhcc----ccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecc
Confidence 3467889999999999888877775 45444 23456677889999999999999999999999999999999999
Q ss_pred ceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHH
Q psy2406 106 KFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKR 185 (464)
Q Consensus 106 ~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (464)
.+++.||+|.+.+++++++++.|+.+.+...+++++..+.+.+++|+|+.|++.+.+. .+.-.++.+...+|+.|+++
T Consensus 82 ~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~--~~~~~~~~~~~~~r~~~~~~ 159 (441)
T TIGR00390 82 KFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQ--WGQTEQQQEPESAREAFRKK 159 (441)
T ss_pred eeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCcccc--ccccccccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999864221 00000111234679999999
Q ss_pred HhcCCCCCcEEEEEecCCC-CcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHH
Q psy2406 186 LREGALDNKEIEIELNDTG-PHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQ 264 (464)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 264 (464)
++.|.|||++|||+++..+ |+++.++++|+++++.++..|++++.|.+++.+||||+||++.|.++||++|+|++.+.+
T Consensus 160 l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~ 239 (441)
T TIGR00390 160 LREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQ 239 (441)
T ss_pred HhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHH
Confidence 9999999999999997764 667888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCch
Q psy2406 265 KAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIP 344 (464)
Q Consensus 265 eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~P 344 (464)
+|++++++.+|||||||||++.+.. +.++|++++|||+.||++|||.+++++++.|+|+||+|||+|+|...+|+|+.|
T Consensus 240 ~a~~~~e~~GIVfiDEiDKIa~~~~-~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIP 318 (441)
T TIGR00390 240 EAIDAVEQSGIIFIDEIDKIAKKGE-SSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIP 318 (441)
T ss_pred HHHHHHHcCCEEEEEchhhhcccCC-CCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccH
Confidence 9999988999999999999998763 358899999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHH
Q psy2406 345 ELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 424 (464)
Q Consensus 345 Efl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE 424 (464)
||+||||+++.|++|+.+++.+||+++++++++||+++|..+|++|.|+++|+++||+.++..|...++.|||.|++++|
T Consensus 319 El~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE 398 (441)
T TIGR00390 319 ELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLE 398 (441)
T ss_pred HHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888999999999999
Q ss_pred HHHHHHhcccCCCc---eeecHHHHHhHhCCCCCCCCCCCcCC
Q psy2406 425 KLLEEVSFNSNNIS---LLVDADYVNSRLGDLSINEDLSRYVL 464 (464)
Q Consensus 425 ~~l~~~l~~~~~~~---v~I~~e~v~~~~~~~~~~~d~~~~~~ 464 (464)
+++++.+|+.|+.. ++||.++|+..+..++.+.||+||||
T Consensus 399 ~~l~d~~fe~p~~~~~~v~I~~~~V~~~l~~~~~~~DlsryIL 441 (441)
T TIGR00390 399 RLLEDISFEAPDLSGQNITIDADYVSKKLGALVADEDLSRFIL 441 (441)
T ss_pred HHHHHHHhcCCCCCCCEEEECHHHHHhHHHHHHhcCCcccccC
Confidence 99999999999753 89999999999999999999999997
No 3
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=100.00 E-value=1.1e-78 Score=628.91 Aligned_cols=430 Identities=58% Similarity=0.899 Sum_probs=391.9
Q ss_pred hhHhhhhhhcchhHHHHhhhhhccc--ccccCCCCCCccccccCCCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecC
Q psy2406 28 ANNLRNKFGIRKAILKASVYIDAPN--TRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEAT 105 (464)
Q Consensus 28 ~~~~l~~~~igq~~~~~~v~~~~~~--~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s 105 (464)
..+.|++|++||..++.+++.++.. +|.++... .+.+..|++|||+||||||||+||++||+.+++||+.+|++
T Consensus 9 I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~----~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t 84 (443)
T PRK05201 9 IVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEE----LRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 84 (443)
T ss_pred HHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcc----cccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecch
Confidence 3467889999999999998888855 55555322 34556789999999999999999999999999999999999
Q ss_pred ceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHH
Q psy2406 106 KFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKR 185 (464)
Q Consensus 106 ~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (464)
.|+++||+|.+.++++++|++.|+++++.+.++.+++.|.+.+|+|+|+.|++.+... ......+.....+|+.|+++
T Consensus 85 ~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~--~~~~~~~~~~~~~r~~~~~~ 162 (443)
T PRK05201 85 KFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNN--WGEEEEKEEISATRQKFRKK 162 (443)
T ss_pred hhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCC--ccccccchhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999853211 00001112235779999999
Q ss_pred HhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy2406 186 LREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQK 265 (464)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e 265 (464)
++.|.|||++|+|+++...|++..++.+|+++++.++..|++++.|+++++++|||+||++.|.++|+++|+|++++.++
T Consensus 163 l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ 242 (443)
T PRK05201 163 LREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQE 242 (443)
T ss_pred HHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHH
Confidence 99999999999999987655566666678999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchh
Q psy2406 266 AINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPE 345 (464)
Q Consensus 266 Av~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PE 345 (464)
|++++++.+|||||||||++.+..+ ++.|+|++|||+.||++|||.+++++++.|+|+||+|||+|+|...+|+|+.||
T Consensus 243 ai~~ae~~GIVfiDEiDKIa~~~~~-~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPE 321 (443)
T PRK05201 243 AIERVEQNGIVFIDEIDKIAARGGS-SGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPE 321 (443)
T ss_pred HHHHHHcCCEEEEEcchhhcccCCC-CCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHH
Confidence 9999999999999999999987654 578999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHH
Q psy2406 346 LQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEK 425 (464)
Q Consensus 346 fl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~ 425 (464)
|+||||+++.|++|+.+++.+||++|.+++++||+++|..+|++|.||++|+++||+.++..|...+++|||+|++++|+
T Consensus 322 l~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~ 401 (443)
T PRK05201 322 LQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEK 401 (443)
T ss_pred HhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred HHHHHhcccCCCc---eeecHHHHHhHhCCCCCCCCCCCcCC
Q psy2406 426 LLEEVSFNSNNIS---LLVDADYVNSRLGDLSINEDLSRYVL 464 (464)
Q Consensus 426 ~l~~~l~~~~~~~---v~I~~e~v~~~~~~~~~~~d~~~~~~ 464 (464)
++++.+|+.|+.. +.||.++|...++.++.+.||+||||
T Consensus 402 ~L~d~~Fe~p~~~~~~v~I~~~~V~~~l~~l~~~~DlskyIL 443 (443)
T PRK05201 402 LLEDISFEAPDMSGETVTIDAAYVDEKLGDLVKDEDLSRYIL 443 (443)
T ss_pred HHHHHhccCCCCCCCEEEECHHHHHHHHHHHHhcCCcccccC
Confidence 9999999999753 89999999999999999999999997
No 4
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-51 Score=408.45 Aligned_cols=282 Identities=33% Similarity=0.531 Sum_probs=244.5
Q ss_pred hhHhhhhhhcchhHHH----HhhhhhcccccccCCCCCCccccccCCCcceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 28 ANNLRNKFGIRKAILK----ASVYIDAPNTRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 28 ~~~~l~~~~igq~~~~----~~v~~~~~~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
+...|..|||||+.++ +|||+ ||+|.+....+.. -+...+||||+||||||||.||+.||+.+++||...|
T Consensus 55 ik~~Ld~YVIGQe~AKKvLsVAVYN--HYKRl~~~~~~~d---vEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiAD 129 (408)
T COG1219 55 IKAHLDEYVIGQEQAKKVLSVAVYN--HYKRLNNKEDNDD---VELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIAD 129 (408)
T ss_pred HHHHhhhheecchhhhceeeeeehh--HHHHHhccCCCCc---eeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeecc
Confidence 3456889999997776 78999 6666654332222 2345689999999999999999999999999999999
Q ss_pred cCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCcccchhHHHHHH
Q psy2406 104 ATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFR 183 (464)
Q Consensus 104 ~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (464)
+++++++||||+|+|+|+.+|+..|
T Consensus 130 ATtLTEAGYVGEDVENillkLlqaa------------------------------------------------------- 154 (408)
T COG1219 130 ATTLTEAGYVGEDVENILLKLLQAA------------------------------------------------------- 154 (408)
T ss_pred ccchhhccccchhHHHHHHHHHHHc-------------------------------------------------------
Confidence 9999999999999999999999884
Q ss_pred HHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHH
Q psy2406 184 KRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQ 263 (464)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 263 (464)
.|+
T Consensus 155 ----------------------dyd------------------------------------------------------- 157 (408)
T COG1219 155 ----------------------DYD------------------------------------------------------- 157 (408)
T ss_pred ----------------------ccC-------------------------------------------------------
Confidence 021
Q ss_pred HHHHhhccCCcEEEEeccccccCcCCCCC-CCCcchhhHHHhhhccccCceeeeee-----------eeecCceeEeecc
Q psy2406 264 QKAINNVEQNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKY-----------GIIKTDHILFIAS 331 (464)
Q Consensus 264 ~eAv~~a~~~sVIfIDEIDK~~~~~~~~~-~~d~~~~gvq~~LLqlLEG~~v~~~~-----------~~i~Tsnil~I~a 331 (464)
|++| +.+||+||||||+++...+.+ .+|+|++||||+||+++||+..+.+- ..++|+||+|||.
T Consensus 158 ---V~rA-erGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcg 233 (408)
T COG1219 158 ---VERA-ERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICG 233 (408)
T ss_pred ---HHHH-hCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEec
Confidence 3667 789999999999999877654 89999999999999999998887521 4899999999999
Q ss_pred CCccc------------------c-----------------CC-----CCCchhhhccCCeEEEcCCCCHHHHHHHHHhh
Q psy2406 332 GAFHL------------------A-----------------KP-----SDLIPELQGRFPIRVELDSLSISDFTRIMTST 371 (464)
Q Consensus 332 g~f~~------------------~-----------------~p-----~~f~PEfl~R~d~iV~f~~Lt~~el~~Il~~~ 371 (464)
|+|.. + .| ..++|||++|+|++..+.+|++++|.+||++|
T Consensus 234 GAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILteP 313 (408)
T COG1219 234 GAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEP 313 (408)
T ss_pred cccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcc
Confidence 99952 0 01 13899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccCCCc----eeecHHHHH
Q psy2406 372 NVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS----LLVDADYVN 447 (464)
Q Consensus 372 ~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~----v~I~~e~v~ 447 (464)
++++.+||+++|.+.+++|.|+++|+..||+.+... ..|||.||.++|.++.+.||++|+.+ +.||.+.|.
T Consensus 314 kNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~r-----kTGARGLRsI~E~~lld~MfelPs~~~v~~v~I~~~~v~ 388 (408)
T COG1219 314 KNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIER-----KTGARGLRSIIEELLLDVMFELPSLEDVEKVVITEEVVD 388 (408)
T ss_pred cHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHh-----ccchhHHHHHHHHHHHHHHhhCCCCCCceEEEEeHHHhC
Confidence 999999999999999999999999999999999987 89999999999999999999999764 899999998
Q ss_pred hHhCCCCC
Q psy2406 448 SRLGDLSI 455 (464)
Q Consensus 448 ~~~~~~~~ 455 (464)
......+.
T Consensus 389 ~~~~p~l~ 396 (408)
T COG1219 389 GNAEPLLI 396 (408)
T ss_pred CCCCCeEe
Confidence 76655544
No 5
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-50 Score=443.98 Aligned_cols=264 Identities=22% Similarity=0.245 Sum_probs=227.4
Q ss_pred ccCccccccchhhhhccCchhHhhhhhhcchhHHHHhhhhhcccccccCCCCCCccccccCCCcceEEEecCCCchHHHH
Q psy2406 9 NIGVKAVKIGTNACENAPSANNLRNKFGIRKAILKASVYIDAPNTRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIA 88 (464)
Q Consensus 9 ~~gi~~~k~~~~~~e~~~~~~~~l~~~~igq~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LA 88 (464)
.+|||+.+|+++++++++++++.|+++|+||+.|+.+|+.+++++|+|+.++++|. +++||.||||||||+||
T Consensus 466 ~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPi-------gsFlF~GPTGVGKTELA 538 (786)
T COG0542 466 WTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPI-------GSFLFLGPTGVGKTELA 538 (786)
T ss_pred HHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCc-------eEEEeeCCCcccHHHHH
Confidence 69999999999999999999999999999999999999999999999999999887 46999999999999999
Q ss_pred HHHHHHhC---CCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q psy2406 89 RRLAKLSN---APFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNL 165 (464)
Q Consensus 89 r~lA~~l~---~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (464)
|+||..+. .+++++|||+| +|.|.|++|+|+|
T Consensus 539 kaLA~~Lfg~e~aliR~DMSEy----------------------------------------~EkHsVSrLIGaP----- 573 (786)
T COG0542 539 KALAEALFGDEQALIRIDMSEY----------------------------------------MEKHSVSRLIGAP----- 573 (786)
T ss_pred HHHHHHhcCCCccceeechHHH----------------------------------------HHHHHHHHHhCCC-----
Confidence 99999996 77999998766 3567999999987
Q ss_pred ccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeHHHHH
Q psy2406 166 DTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAI 245 (464)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (464)
|||+||.++|
T Consensus 574 ---------------------------------------PGYVGyeeGG------------------------------- 583 (786)
T COG0542 574 ---------------------------------------PGYVGYEEGG------------------------------- 583 (786)
T ss_pred ---------------------------------------CCCceecccc-------------------------------
Confidence 9997554444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeee-eeeeecCc
Q psy2406 246 KLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGIIKTD 324 (464)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~-~~~~i~Ts 324 (464)
++||||++. ||||||||||+|+||+ |.+.|||+||.+..+. +...|+++
T Consensus 584 ----------------~LTEaVRr~-PySViLlDEIEKAHpd-------------V~nilLQVlDdGrLTD~~Gr~VdFr 633 (786)
T COG0542 584 ----------------QLTEAVRRK-PYSVILLDEIEKAHPD-------------VFNLLLQVLDDGRLTDGQGRTVDFR 633 (786)
T ss_pred ----------------chhHhhhcC-CCeEEEechhhhcCHH-------------HHHHHHHHhcCCeeecCCCCEEecc
Confidence 569999999 9999999999999987 7789999998433332 22355555
Q ss_pred eeEeeccCCccc--------c--C--------------CCCCchhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHH
Q psy2406 325 HILFIASGAFHL--------A--K--------------PSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYE 380 (464)
Q Consensus 325 nil~I~ag~f~~--------~--~--------------p~~f~PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~ 380 (464)
|.++|+|++... . . ...|+|||+||+|.+|.|++|+.+++.+|+ ..+++++.
T Consensus 634 NtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv----~~~L~~l~ 709 (786)
T COG0542 634 NTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIV----DLQLNRLA 709 (786)
T ss_pred eeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHH----HHHHHHHH
Confidence 555555543210 0 0 125999999999999999999999999999 57889999
Q ss_pred HHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcc
Q psy2406 381 ALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN 433 (464)
Q Consensus 381 ~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~ 433 (464)
+.|..+++.+++++++.+||++.||+| .+|||||+|+|++.+++++.+
T Consensus 710 ~~L~~~~i~l~~s~~a~~~l~~~gyd~-----~~GARpL~R~Iq~~i~~~La~ 757 (786)
T COG0542 710 KRLAERGITLELSDEAKDFLAEKGYDP-----EYGARPLRRAIQQEIEDPLAD 757 (786)
T ss_pred HHHHhCCceEEECHHHHHHHHHhccCC-----CcCchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 899999999999999887644
No 6
>KOG0745|consensus
Probab=100.00 E-value=4.2e-47 Score=388.51 Aligned_cols=236 Identities=37% Similarity=0.601 Sum_probs=213.6
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAED 150 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~ 150 (464)
..||||.||+|+|||.||+.||+.+++||...||++++++||||+|+|++|+.|+..|
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A---------------------- 283 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEA---------------------- 283 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHc----------------------
Confidence 3789999999999999999999999999999999999999999999999999998884
Q ss_pred HHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhcC
Q psy2406 151 RVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIG 230 (464)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~ 230 (464)
+|
T Consensus 284 -------------------------------------------------------~~----------------------- 285 (564)
T KOG0745|consen 284 -------------------------------------------------------EY----------------------- 285 (564)
T ss_pred -------------------------------------------------------cC-----------------------
Confidence 11
Q ss_pred CCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCC-CCCcchhhHHHhhhccc
Q psy2406 231 NHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLV 309 (464)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~-~~d~~~~gvq~~LLqlL 309 (464)
-|++| +.+|||||||||+.....+.. .+||+++|||+.||++|
T Consensus 286 -----------------------------------nVekA-QqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKll 329 (564)
T KOG0745|consen 286 -----------------------------------NVEKA-QQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLL 329 (564)
T ss_pred -----------------------------------CHHHH-hcCeEEEehhhhhcccCccccccccccchhHHHHHHHHh
Confidence 13667 889999999999997666543 57999999999999999
Q ss_pred cCceeee--ee---------eeecCceeEeeccCCccc------------------c-C---------------------
Q psy2406 310 EGTTVNT--KY---------GIIKTDHILFIASGAFHL------------------A-K--------------------- 338 (464)
Q Consensus 310 EG~~v~~--~~---------~~i~Tsnil~I~ag~f~~------------------~-~--------------------- 338 (464)
||..|+. ++ ..|+|+||+|||.|+|.. . .
T Consensus 330 EGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~ 409 (564)
T KOG0745|consen 330 EGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRD 409 (564)
T ss_pred cccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCCCccchhhcccccCcchhHHHHH
Confidence 9999887 22 489999999999999941 0 0
Q ss_pred -------C-----CCCchhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhc
Q psy2406 339 -------P-----SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 406 (464)
Q Consensus 339 -------p-----~~f~PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~ 406 (464)
+ ..++|||++|||++|.|.+|++++|.+||++|++++.+||+++|.+.+++|.||++|++.||+.+..
T Consensus 410 ~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~ 489 (564)
T KOG0745|consen 410 ELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALK 489 (564)
T ss_pred HHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHh
Confidence 0 1278999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccChhHHHHHHHHHHHHHhcccCCCc---eeecHHHHH
Q psy2406 407 INERTENIGARRLYTAMEKLLEEVSFNSNNIS---LLVDADYVN 447 (464)
Q Consensus 407 ~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~---v~I~~e~v~ 447 (464)
. +.|||.||.++|++|.+++|+.|... |+||.+.|+
T Consensus 490 r-----~TGARgLRsIlE~~LleamfevPGSdI~~V~Vdee~v~ 528 (564)
T KOG0745|consen 490 R-----KTGARGLRSILESLLLEAMFEVPGSDIKAVLVDEEAVK 528 (564)
T ss_pred h-----ccchHHHHHHHHHHHhhhcccCCCCceEEEEecHHHhc
Confidence 7 89999999999999999999999776 899999997
No 7
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=100.00 E-value=1.4e-43 Score=369.78 Aligned_cols=282 Identities=31% Similarity=0.482 Sum_probs=231.1
Q ss_pred chhHhhhhhhcchhHHHHhhhhhccc--ccccCC--CCCCccccccCCCcceEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 27 SANNLRNKFGIRKAILKASVYIDAPN--TRANNI--SRNNPVIRENNVILDMVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 27 ~~~~~l~~~~igq~~~~~~v~~~~~~--~r~~~~--~~~~~~~~~~~~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
.+.+.|.++||||+.++..++.++.+ +|.+.. .+.++. -...++++||+||||||||++|++||+.+++||..+
T Consensus 70 ~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~--~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~ 147 (413)
T TIGR00382 70 EIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNG--VELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIA 147 (413)
T ss_pred HHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccc--cccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence 45678899999999999877666633 333321 111110 112357899999999999999999999999999999
Q ss_pred ecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCcccchhHHHHH
Q psy2406 103 EATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIF 182 (464)
Q Consensus 103 d~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (464)
+++.+++.||+|.+.+.++..++..+ +
T Consensus 148 da~~L~~~gyvG~d~e~~L~~~~~~~-------------------------------~---------------------- 174 (413)
T TIGR00382 148 DATTLTEAGYVGEDVENILLKLLQAA-------------------------------D---------------------- 174 (413)
T ss_pred chhhccccccccccHHHHHHHHHHhC-------------------------------c----------------------
Confidence 99999999999999888777665541 0
Q ss_pred HHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeHHHHHHHHHHHHHHhcCCHHHH
Q psy2406 183 RKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEI 262 (464)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (464)
+
T Consensus 175 ------------------------~------------------------------------------------------- 175 (413)
T TIGR00382 175 ------------------------Y------------------------------------------------------- 175 (413)
T ss_pred ------------------------c-------------------------------------------------------
Confidence 0
Q ss_pred HHHHHhhccCCcEEEEeccccccCcCCCCC-CCCcchhhHHHhhhccccCceeee----------ee-eeecCceeEeec
Q psy2406 263 QQKAINNVEQNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNT----------KY-GIIKTDHILFIA 330 (464)
Q Consensus 263 ~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~-~~d~~~~gvq~~LLqlLEG~~v~~----------~~-~~i~Tsnil~I~ 330 (464)
.++++ +++||||||||+++++..+.+ +.|++++++|+.||++|||..++. ++ .+|+|+|++|||
T Consensus 176 ---~l~~a-~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~ 251 (413)
T TIGR00382 176 ---DVEKA-QKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFIC 251 (413)
T ss_pred ---cHHhc-ccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeee
Confidence 01334 678999999999998765433 679999999999999999876652 22 589999999999
Q ss_pred cCCccc---------c--------C---C------------------CCCchhhhccCCeEEEcCCCCHHHHHHHHHhhH
Q psy2406 331 SGAFHL---------A--------K---P------------------SDLIPELQGRFPIRVELDSLSISDFTRIMTSTN 372 (464)
Q Consensus 331 ag~f~~---------~--------~---p------------------~~f~PEfl~R~d~iV~f~~Lt~~el~~Il~~~~ 372 (464)
+|+|.. . . . ..|+|||+||+|.++.|+||+.+++.+|+..++
T Consensus 252 ~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~ 331 (413)
T TIGR00382 252 GGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPK 331 (413)
T ss_pred cccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHH
Confidence 998841 0 0 0 128999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccCCCc----eeecHHHHHh
Q psy2406 373 VCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS----LLVDADYVNS 448 (464)
Q Consensus 373 ~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~----v~I~~e~v~~ 448 (464)
+.+++++++++..+|++|.+|++|+++||+.++++ .+|||+|+++|++.+.+.+|++|+.+ +.||++.|+.
T Consensus 332 n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~-----~~GAR~Lr~iie~~l~~~m~e~p~~~~~~~v~i~~~~v~~ 406 (413)
T TIGR00382 332 NALVKQYQALFKMDNVELDFEEEALKAIAKKALER-----KTGARGLRSIVEGLLLDVMFDLPSLEDLEKVVITKETVLK 406 (413)
T ss_pred HHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCC-----CCCchHHHHHHHHhhHHHHhhCCCCCCCcEEEECHHHHcC
Confidence 99999999999999999999999999999999998 89999999999999999999999753 8899999976
Q ss_pred HhC
Q psy2406 449 RLG 451 (464)
Q Consensus 449 ~~~ 451 (464)
...
T Consensus 407 ~~~ 409 (413)
T TIGR00382 407 QSE 409 (413)
T ss_pred cCC
Confidence 543
No 8
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=100.00 E-value=2.5e-43 Score=368.60 Aligned_cols=283 Identities=30% Similarity=0.500 Sum_probs=230.3
Q ss_pred chhHhhhhhhcchhHHHHhhhhhc--ccccccCCCCCCccccccCCCcceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 27 SANNLRNKFGIRKAILKASVYIDA--PNTRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 27 ~~~~~l~~~~igq~~~~~~v~~~~--~~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
.+...|.++++||+.++.+++.++ +++|.......+ . ......+++||+||||||||++|++||+.+++||+.+|+
T Consensus 64 ~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~-~-~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~ 141 (412)
T PRK05342 64 EIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKD-D-DVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADA 141 (412)
T ss_pred HHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccc-c-ccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecch
Confidence 345667889999999998765554 333332211100 0 011234789999999999999999999999999999999
Q ss_pred CceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCcccchhHHHHHHH
Q psy2406 105 TKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRK 184 (464)
Q Consensus 105 s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (464)
+.+++.||+|.+.++++..++..+.
T Consensus 142 ~~l~~~gyvG~d~e~~l~~l~~~~~------------------------------------------------------- 166 (412)
T PRK05342 142 TTLTEAGYVGEDVENILLKLLQAAD------------------------------------------------------- 166 (412)
T ss_pred hhcccCCcccchHHHHHHHHHHhcc-------------------------------------------------------
Confidence 9999999999998888876665420
Q ss_pred HHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHH
Q psy2406 185 RLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQ 264 (464)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 264 (464)
+
T Consensus 167 ----------------------~--------------------------------------------------------- 167 (412)
T PRK05342 167 ----------------------Y--------------------------------------------------------- 167 (412)
T ss_pred ----------------------c---------------------------------------------------------
Confidence 0
Q ss_pred HHHhhccCCcEEEEeccccccCcCCCC-CCCCcchhhHHHhhhccccCceeeee-----------eeeecCceeEeeccC
Q psy2406 265 KAINNVEQNGIIFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTK-----------YGIIKTDHILFIASG 332 (464)
Q Consensus 265 eAv~~a~~~sVIfIDEIDK~~~~~~~~-~~~d~~~~gvq~~LLqlLEG~~v~~~-----------~~~i~Tsnil~I~ag 332 (464)
.++++ +++||||||||++++...+. .+.|++++++|+.||++|||..+... ...|+|+|++|||+|
T Consensus 168 -~~~~a-~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~G 245 (412)
T PRK05342 168 -DVEKA-QRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGG 245 (412)
T ss_pred -cHHHc-CCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecc
Confidence 01334 78999999999999875442 36799999999999999998765541 157999999999999
Q ss_pred Cccc------------------c-C----------------CC-----CCchhhhccCCeEEEcCCCCHHHHHHHHHhhH
Q psy2406 333 AFHL------------------A-K----------------PS-----DLIPELQGRFPIRVELDSLSISDFTRIMTSTN 372 (464)
Q Consensus 333 ~f~~------------------~-~----------------p~-----~f~PEfl~R~d~iV~f~~Lt~~el~~Il~~~~ 372 (464)
+|.. . . |. .|+|||+||+|.+|.|++|+.+++.+|++.++
T Consensus 246 af~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~ 325 (412)
T PRK05342 246 AFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPK 325 (412)
T ss_pred cccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHH
Confidence 9852 0 0 11 27999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccCCCc----eeecHHHHHh
Q psy2406 373 VCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS----LLVDADYVNS 448 (464)
Q Consensus 373 ~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~----v~I~~e~v~~ 448 (464)
+.+++++++++..++++|.++++|+++||+.+|++ .+|||+|+++|++.+.+.+|++|+.+ ++||+++|..
T Consensus 326 ~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~-----~~GAR~Lrriie~~l~~~~~~~p~~~~~~~v~I~~~~v~~ 400 (412)
T PRK05342 326 NALVKQYQKLFEMDGVELEFTDEALEAIAKKAIER-----KTGARGLRSILEEILLDVMFELPSREDVEKVVITKEVVEG 400 (412)
T ss_pred HHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCC-----CCCCchHHHHHHHHhHHHHHhccccCCCceEEECHHHhcc
Confidence 99999999999999999999999999999999998 89999999999999999999999742 8999999987
Q ss_pred HhCC
Q psy2406 449 RLGD 452 (464)
Q Consensus 449 ~~~~ 452 (464)
....
T Consensus 401 ~~~~ 404 (412)
T PRK05342 401 KAKP 404 (412)
T ss_pred ccCC
Confidence 6433
No 9
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-39 Score=354.99 Aligned_cols=270 Identities=17% Similarity=0.233 Sum_probs=226.7
Q ss_pred hhhhhh-ccCccccccchhhhhccCchhHhhhhhhcchhHHHHhhhhhcccccccCCCCCCccccccCCCcceEEEecCC
Q psy2406 3 IHEIFN-NIGVKAVKIGTNACENAPSANNLRNKFGIRKAILKASVYIDAPNTRANNISRNNPVIRENNVILDMVIKVLLL 81 (464)
Q Consensus 3 ~~~~~~-~~gi~~~k~~~~~~e~~~~~~~~l~~~~igq~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G 81 (464)
|.+++. -+|||+.++.+++.+++..+++.|+++++||+.++..+..++...++|+.++++|. .++||+||||
T Consensus 426 i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~-------~~~Lf~GP~G 498 (758)
T PRK11034 426 IESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPV-------GSFLFAGPTG 498 (758)
T ss_pred HHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCc-------ceEEEECCCC
Confidence 344443 78999999999999999999999999999999999999999999999987666554 4699999999
Q ss_pred CchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy2406 82 VGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKE 161 (464)
Q Consensus 82 ~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (464)
||||++|++||+.++.+|+++||++|.+. +.+..|+|+|
T Consensus 499 vGKT~lAk~LA~~l~~~~i~id~se~~~~----------------------------------------~~~~~LiG~~- 537 (758)
T PRK11034 499 VGKTEVTVQLSKALGIELLRFDMSEYMER----------------------------------------HTVSRLIGAP- 537 (758)
T ss_pred CCHHHHHHHHHHHhCCCcEEeechhhccc----------------------------------------ccHHHHcCCC-
Confidence 99999999999999999999999887532 1234455654
Q ss_pred CCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeH
Q psy2406 162 KSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKI 241 (464)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (464)
|||.++..+|
T Consensus 538 -------------------------------------------~gyvg~~~~g--------------------------- 547 (758)
T PRK11034 538 -------------------------------------------PGYVGFDQGG--------------------------- 547 (758)
T ss_pred -------------------------------------------CCcccccccc---------------------------
Confidence 7786543333
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee-ee
Q psy2406 242 REAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GI 320 (464)
Q Consensus 242 ~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~-~~ 320 (464)
.+++++++. |+||||||||||+++. +++.||++||.+.++... ..
T Consensus 548 --------------------~L~~~v~~~-p~sVlllDEieka~~~-------------v~~~LLq~ld~G~ltd~~g~~ 593 (758)
T PRK11034 548 --------------------LLTDAVIKH-PHAVLLLDEIEKAHPD-------------VFNLLLQVMDNGTLTDNNGRK 593 (758)
T ss_pred --------------------hHHHHHHhC-CCcEEEeccHhhhhHH-------------HHHHHHHHHhcCeeecCCCce
Confidence 457788887 9999999999999865 788999999966554433 46
Q ss_pred ecCceeEeeccCCccc------------cCC---------CCCchhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHH
Q psy2406 321 IKTDHILFIASGAFHL------------AKP---------SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQY 379 (464)
Q Consensus 321 i~Tsnil~I~ag~f~~------------~~p---------~~f~PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~ 379 (464)
++.+|+++|+|++... ..+ ..|+|||+||+|.+|.|+||+.+++.+|+ +..+.++
T Consensus 594 vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~----~~~l~~~ 669 (758)
T PRK11034 594 ADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVV----DKFIVEL 669 (758)
T ss_pred ecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHH----HHHHHHH
Confidence 7888999999886321 010 24999999999999999999999999999 5677888
Q ss_pred HHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcc
Q psy2406 380 EALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN 433 (464)
Q Consensus 380 ~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~ 433 (464)
++++..+|+++.++++++++|++.+|++ .+|||+|+++|++.+.+++.+
T Consensus 670 ~~~l~~~~i~l~~~~~~~~~l~~~~~~~-----~~GAR~l~r~i~~~l~~~la~ 718 (758)
T PRK11034 670 QAQLDQKGVSLEVSQEARDWLAEKGYDR-----AMGARPMARVIQDNLKKPLAN 718 (758)
T ss_pred HHHHHHCCCCceECHHHHHHHHHhCCCC-----CCCCchHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999998 899999999999999887654
No 10
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=7.2e-38 Score=352.34 Aligned_cols=264 Identities=21% Similarity=0.249 Sum_probs=220.0
Q ss_pred ccCccccccchhhhhccCchhHhhhhhhcchhHHHHhhhhhcccccccCCCCCCccccccCCCcceEEEecCCCchHHHH
Q psy2406 9 NIGVKAVKIGTNACENAPSANNLRNKFGIRKAILKASVYIDAPNTRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIA 88 (464)
Q Consensus 9 ~~gi~~~k~~~~~~e~~~~~~~~l~~~~igq~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LA 88 (464)
-+|||+.++.+++.+++..+++.|++.|+||+.++..|+.++.+.|+|+.++++|. ..+||+||||||||+||
T Consensus 484 ~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~-------~~~lf~Gp~GvGKt~lA 556 (821)
T CHL00095 484 WTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPI-------ASFLFSGPTGVGKTELT 556 (821)
T ss_pred HHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCc-------eEEEEECCCCCcHHHHH
Confidence 79999999999999999999999999999999999999999999999997776555 45999999999999999
Q ss_pred HHHHHHh---CCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q psy2406 89 RRLAKLS---NAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNL 165 (464)
Q Consensus 89 r~lA~~l---~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (464)
++||+.+ +.+++++|+++|.+.+ .+.+|+|+|
T Consensus 557 ~~LA~~l~~~~~~~~~~d~s~~~~~~----------------------------------------~~~~l~g~~----- 591 (821)
T CHL00095 557 KALASYFFGSEDAMIRLDMSEYMEKH----------------------------------------TVSKLIGSP----- 591 (821)
T ss_pred HHHHHHhcCCccceEEEEchhccccc----------------------------------------cHHHhcCCC-----
Confidence 9999998 4689999998876321 233455554
Q ss_pred ccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeHHHHH
Q psy2406 166 DTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAI 245 (464)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (464)
|||+++..+|
T Consensus 592 ---------------------------------------~gyvg~~~~~------------------------------- 601 (821)
T CHL00095 592 ---------------------------------------PGYVGYNEGG------------------------------- 601 (821)
T ss_pred ---------------------------------------CcccCcCccc-------------------------------
Confidence 8887555444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCcee-eeeeeeecCc
Q psy2406 246 KLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTV-NTKYGIIKTD 324 (464)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v-~~~~~~i~Ts 324 (464)
.+++++++. |++|||||||||+++. +++.||++||.+.+ +.....++++
T Consensus 602 ----------------~l~~~~~~~-p~~VvllDeieka~~~-------------v~~~Llq~le~g~~~d~~g~~v~~~ 651 (821)
T CHL00095 602 ----------------QLTEAVRKK-PYTVVLFDEIEKAHPD-------------IFNLLLQILDDGRLTDSKGRTIDFK 651 (821)
T ss_pred ----------------hHHHHHHhC-CCeEEEECChhhCCHH-------------HHHHHHHHhccCceecCCCcEEecC
Confidence 457788888 9999999999999865 77899999985444 3344567778
Q ss_pred eeEeeccCCcccc-------------------C-C-------------CCCchhhhccCCeEEEcCCCCHHHHHHHHHhh
Q psy2406 325 HILFIASGAFHLA-------------------K-P-------------SDLIPELQGRFPIRVELDSLSISDFTRIMTST 371 (464)
Q Consensus 325 nil~I~ag~f~~~-------------------~-p-------------~~f~PEfl~R~d~iV~f~~Lt~~el~~Il~~~ 371 (464)
|.+||+|+++... . . ..|+|||+||+|.+|.|+||+.+++.+|++
T Consensus 652 ~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~-- 729 (821)
T CHL00095 652 NTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAE-- 729 (821)
T ss_pred ceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHH--
Confidence 8888887654210 0 0 138999999999999999999999999994
Q ss_pred HHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcc
Q psy2406 372 NVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN 433 (464)
Q Consensus 372 ~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~ 433 (464)
..+.++.+.+..+|+.+.++++++++|++.+|++ .+|||+|+++|++.+.+++.+
T Consensus 730 --~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~-----~~GAR~l~r~i~~~i~~~l~~ 784 (821)
T CHL00095 730 --IMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNP-----LYGARPLRRAIMRLLEDPLAE 784 (821)
T ss_pred --HHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCC-----CCChhhHHHHHHHHHHHHHHH
Confidence 5667776677888999999999999999999998 899999999999999887755
No 11
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=2.2e-37 Score=344.59 Aligned_cols=264 Identities=19% Similarity=0.241 Sum_probs=220.8
Q ss_pred ccCccccccchhhhhccCchhHhhhhhhcchhHHHHhhhhhcccccccCCCCCCccccccCCCcceEEEecCCCchHHHH
Q psy2406 9 NIGVKAVKIGTNACENAPSANNLRNKFGIRKAILKASVYIDAPNTRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIA 88 (464)
Q Consensus 9 ~~gi~~~k~~~~~~e~~~~~~~~l~~~~igq~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LA 88 (464)
-+|||+.++..++.+++..++..|++.++||+.++..+..++...|+|+.++++|. .++||+||||||||++|
T Consensus 429 ~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~-------~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 429 MAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPV-------GSFLFTGPTGVGKTELA 501 (731)
T ss_pred HhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCc-------eeEEEECCCCccHHHHH
Confidence 57999999999999999999999999999999999999999999999987666444 45999999999999999
Q ss_pred HHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccc
Q psy2406 89 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTD 168 (464)
Q Consensus 89 r~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (464)
++||+.++++++++||++|.+.+ .+..|+|+|
T Consensus 502 ~~la~~l~~~~~~~d~se~~~~~----------------------------------------~~~~lig~~-------- 533 (731)
T TIGR02639 502 KQLAEALGVHLERFDMSEYMEKH----------------------------------------TVSRLIGAP-------- 533 (731)
T ss_pred HHHHHHhcCCeEEEeCchhhhcc----------------------------------------cHHHHhcCC--------
Confidence 99999999999999998875421 234455554
Q ss_pred cCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeHHHHHHHH
Q psy2406 169 FNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLL 248 (464)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (464)
|||.+ |+++|
T Consensus 534 ------------------------------------~gyvg-----~~~~~----------------------------- 543 (731)
T TIGR02639 534 ------------------------------------PGYVG-----FEQGG----------------------------- 543 (731)
T ss_pred ------------------------------------CCCcc-----cchhh-----------------------------
Confidence 77764 44322
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee-eeecCceeE
Q psy2406 249 IDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHIL 327 (464)
Q Consensus 249 ~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~-~~i~Tsnil 327 (464)
.+++++++. |++|||||||||+++. +++.||++||++.++... ..++.+|.+
T Consensus 544 -------------~l~~~~~~~-p~~VvllDEieka~~~-------------~~~~Ll~~ld~g~~~d~~g~~vd~~~~i 596 (731)
T TIGR02639 544 -------------LLTEAVRKH-PHCVLLLDEIEKAHPD-------------IYNILLQVMDYATLTDNNGRKADFRNVI 596 (731)
T ss_pred -------------HHHHHHHhC-CCeEEEEechhhcCHH-------------HHHHHHHhhccCeeecCCCcccCCCCCE
Confidence 457788887 9999999999999875 778999999976665433 467788888
Q ss_pred eeccCCccc------------cC---------CCCCchhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhc
Q psy2406 328 FIASGAFHL------------AK---------PSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATE 386 (464)
Q Consensus 328 ~I~ag~f~~------------~~---------p~~f~PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~ 386 (464)
+|+|++... .. ...|.|||+||||.+|.|+||+.+++.+|++ ..+.++.+.+..+
T Consensus 597 ii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~----~~L~~l~~~l~~~ 672 (731)
T TIGR02639 597 LIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQ----KFVDELSKQLNEK 672 (731)
T ss_pred EEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHH----HHHHHHHHHHHhC
Confidence 888775421 00 0248999999999999999999999999995 5667777778888
Q ss_pred CceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcc
Q psy2406 387 GIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN 433 (464)
Q Consensus 387 gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~ 433 (464)
|+.+.++++++++|++.+|++ .+|||+|+++|++.+.+++.+
T Consensus 673 ~~~l~i~~~a~~~La~~~~~~-----~~GaR~l~r~i~~~~~~~l~~ 714 (731)
T TIGR02639 673 NIKLELTDDAKKYLAEKGYDE-----EFGARPLARVIQEEIKKPLSD 714 (731)
T ss_pred CCeEEeCHHHHHHHHHhCCCc-----ccCchHHHHHHHHHhHHHHHH
Confidence 999999999999999999998 899999999999999887644
No 12
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=3e-37 Score=347.64 Aligned_cols=263 Identities=16% Similarity=0.179 Sum_probs=216.7
Q ss_pred ccCccccccchhhhhccCchhHhhhhhhcchhHHHHhhhhhcccccccCCCCCCccccccCCCcceEEEecCCCchHHHH
Q psy2406 9 NIGVKAVKIGTNACENAPSANNLRNKFGIRKAILKASVYIDAPNTRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIA 88 (464)
Q Consensus 9 ~~gi~~~k~~~~~~e~~~~~~~~l~~~~igq~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LA 88 (464)
-+|||+.++.+++.+++..+++.|++.|+||+.++.+|+.++.+.|+|+.++.+|. +.+||+||||||||++|
T Consensus 541 ~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~-------~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 541 WTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPL-------GVFLLVGPSGVGKTETA 613 (852)
T ss_pred HHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCc-------eEEEEECCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999987666444 34999999999999999
Q ss_pred HHHHHHh---CCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q psy2406 89 RRLAKLS---NAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNL 165 (464)
Q Consensus 89 r~lA~~l---~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (464)
++||+.+ ..+|+.+||++|.+. |.++.|+|+|
T Consensus 614 ~~La~~l~~~~~~~~~~dmse~~~~----------------------------------------~~~~~l~g~~----- 648 (852)
T TIGR03345 614 LALAELLYGGEQNLITINMSEFQEA----------------------------------------HTVSRLKGSP----- 648 (852)
T ss_pred HHHHHHHhCCCcceEEEeHHHhhhh----------------------------------------hhhccccCCC-----
Confidence 9999998 457999999877532 2445566665
Q ss_pred ccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeHHHHH
Q psy2406 166 DTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAI 245 (464)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (464)
|||+|+..+|
T Consensus 649 ---------------------------------------~gyvg~~~~g------------------------------- 658 (852)
T TIGR03345 649 ---------------------------------------PGYVGYGEGG------------------------------- 658 (852)
T ss_pred ---------------------------------------CCcccccccc-------------------------------
Confidence 8897665544
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee-eeecCc
Q psy2406 246 KLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTD 324 (464)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~-~~i~Ts 324 (464)
.++++++++ |++||+||||||+|+. +++.||++||.+.++... ..++++
T Consensus 659 ----------------~L~~~v~~~-p~svvllDEieka~~~-------------v~~~Llq~ld~g~l~d~~Gr~vd~~ 708 (852)
T TIGR03345 659 ----------------VLTEAVRRK-PYSVVLLDEVEKAHPD-------------VLELFYQVFDKGVMEDGEGREIDFK 708 (852)
T ss_pred ----------------hHHHHHHhC-CCcEEEEechhhcCHH-------------HHHHHHHHhhcceeecCCCcEEecc
Confidence 457888887 9999999999999975 677999999866554433 477788
Q ss_pred eeEeeccCCccc--------c-C--C--------------CCCchhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHH
Q psy2406 325 HILFIASGAFHL--------A-K--P--------------SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQY 379 (464)
Q Consensus 325 nil~I~ag~f~~--------~-~--p--------------~~f~PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~ 379 (464)
|.++|+|++... . . + ..|+|||+||++ +|.|+||+.+++.+|+. ..+.++
T Consensus 709 n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~----~~L~~l 783 (852)
T TIGR03345 709 NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVR----LKLDRI 783 (852)
T ss_pred ccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHH----HHHHHH
Confidence 888888765421 0 0 1 139999999998 78999999999999995 455555
Q ss_pred HHHHhhc-CceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcc
Q psy2406 380 EALLATE-GIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN 433 (464)
Q Consensus 380 ~~ll~~~-gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~ 433 (464)
.+.+..+ |+.+.++++++++|++.++++ .+|||+|+++|++.+.+++.+
T Consensus 784 ~~rl~~~~gi~l~i~d~a~~~La~~g~~~-----~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 784 ARRLKENHGAELVYSEALVEHIVARCTEV-----ESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred HHHHHHhcCceEEECHHHHHHHHHHcCCC-----CCChHHHHHHHHHHHHHHHHH
Confidence 5555444 999999999999999999998 899999999999988877654
No 13
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=2.7e-34 Score=324.51 Aligned_cols=264 Identities=19% Similarity=0.246 Sum_probs=218.9
Q ss_pred ccCccccccchhhhhccCchhHhhhhhhcchhHHHHhhhhhcccccccCCCCCCccccccCCCcceEEEecCCCchHHHH
Q psy2406 9 NIGVKAVKIGTNACENAPSANNLRNKFGIRKAILKASVYIDAPNTRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIA 88 (464)
Q Consensus 9 ~~gi~~~k~~~~~~e~~~~~~~~l~~~~igq~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LA 88 (464)
-+|||+.++.+++.+++..+++.|++.++||..++..|..++.+.++++.++++|. ..+||+||||||||++|
T Consensus 540 ~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~-------~~~Lf~Gp~GvGKt~lA 612 (852)
T TIGR03346 540 WTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPI-------GSFLFLGPTGVGKTELA 612 (852)
T ss_pred hcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCC-------eEEEEEcCCCCCHHHHH
Confidence 58999999999999999999999999999999999999999999999987766554 45999999999999999
Q ss_pred HHHHHHh---CCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q psy2406 89 RRLAKLS---NAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNL 165 (464)
Q Consensus 89 r~lA~~l---~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (464)
++||+.+ +.+++.+||++|.+. +.+..|+|+|
T Consensus 613 ~~La~~l~~~~~~~i~~d~s~~~~~----------------------------------------~~~~~l~g~~----- 647 (852)
T TIGR03346 613 KALAEFLFDDEDAMVRIDMSEYMEK----------------------------------------HSVARLIGAP----- 647 (852)
T ss_pred HHHHHHhcCCCCcEEEEechhhccc----------------------------------------chHHHhcCCC-----
Confidence 9999987 468999999887531 1234455654
Q ss_pred ccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeHHHHH
Q psy2406 166 DTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAI 245 (464)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (464)
|||.++..+|
T Consensus 648 ---------------------------------------~g~~g~~~~g------------------------------- 657 (852)
T TIGR03346 648 ---------------------------------------PGYVGYEEGG------------------------------- 657 (852)
T ss_pred ---------------------------------------CCccCccccc-------------------------------
Confidence 7786444333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeee-eeeeecCc
Q psy2406 246 KLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGIIKTD 324 (464)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~-~~~~i~Ts 324 (464)
.+++++++. |++|||||||||+++. +++.||++||.+.++. ....++.+
T Consensus 658 ----------------~l~~~v~~~-p~~vlllDeieka~~~-------------v~~~Ll~~l~~g~l~d~~g~~vd~r 707 (852)
T TIGR03346 658 ----------------QLTEAVRRK-PYSVVLFDEVEKAHPD-------------VFNVLLQVLDDGRLTDGQGRTVDFR 707 (852)
T ss_pred ----------------HHHHHHHcC-CCcEEEEeccccCCHH-------------HHHHHHHHHhcCceecCCCeEEecC
Confidence 447788877 9999999999999865 7889999997554443 33467778
Q ss_pred eeEeeccCCcccc---C------------------CCCCchhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHH
Q psy2406 325 HILFIASGAFHLA---K------------------PSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALL 383 (464)
Q Consensus 325 nil~I~ag~f~~~---~------------------p~~f~PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll 383 (464)
|.++|+|++.... + ...|+|||++|||.+|.|.||+.+++.+|+. ..+..+.+.+
T Consensus 708 n~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~----l~L~~l~~~l 783 (852)
T TIGR03346 708 NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVE----IQLGRLRKRL 783 (852)
T ss_pred CcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHH----HHHHHHHHHH
Confidence 8888888765211 0 1249999999999999999999999999995 4666667777
Q ss_pred hhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcc
Q psy2406 384 ATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN 433 (464)
Q Consensus 384 ~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~ 433 (464)
..+|+.+.++++++++|++.+|++ .+|||+|+++|++.+.+++.+
T Consensus 784 ~~~~~~l~i~~~a~~~L~~~~~~~-----~~gaR~L~~~i~~~i~~~l~~ 828 (852)
T TIGR03346 784 AERKITLELSDAALDFLAEAGYDP-----VYGARPLKRAIQREIENPLAK 828 (852)
T ss_pred HHCCCeecCCHHHHHHHHHhCCCC-----CCCchhHHHHHHHHHHHHHHH
Confidence 788999999999999999999998 899999999999999887654
No 14
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=2.2e-34 Score=324.88 Aligned_cols=264 Identities=20% Similarity=0.249 Sum_probs=214.2
Q ss_pred ccCccccccchhhhhccCchhHhhhhhhcchhHHHHhhhhhcccccccCCCCCCccccccCCCcceEEEecCCCchHHHH
Q psy2406 9 NIGVKAVKIGTNACENAPSANNLRNKFGIRKAILKASVYIDAPNTRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIA 88 (464)
Q Consensus 9 ~~gi~~~k~~~~~~e~~~~~~~~l~~~~igq~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LA 88 (464)
-+|||+.+|.+++.+++..+++.|.+.++||..++..|..++...++++.++++|. ..+||+||||||||++|
T Consensus 543 ~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~-------~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 543 WTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPI-------GSFLFLGPTGVGKTELC 615 (857)
T ss_pred HHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCC-------ceEEEECCCCCCHHHHH
Confidence 58999999999999999999999999999999999999999999999987766544 35999999999999999
Q ss_pred HHHHHHh---CCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q psy2406 89 RRLAKLS---NAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNL 165 (464)
Q Consensus 89 r~lA~~l---~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (464)
++||+.+ +.+|+.++|++|.+ .+.+..|+|+|
T Consensus 616 ~aLa~~l~~~~~~~i~id~se~~~----------------------------------------~~~~~~LiG~~----- 650 (857)
T PRK10865 616 KALANFMFDSDDAMVRIDMSEFME----------------------------------------KHSVSRLVGAP----- 650 (857)
T ss_pred HHHHHHhhcCCCcEEEEEhHHhhh----------------------------------------hhhHHHHhCCC-----
Confidence 9999987 45799999876632 12344556654
Q ss_pred ccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeHHHHH
Q psy2406 166 DTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAI 245 (464)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (464)
|||+ ||+++|
T Consensus 651 ---------------------------------------pgy~-----g~~~~g-------------------------- 660 (857)
T PRK10865 651 ---------------------------------------PGYV-----GYEEGG-------------------------- 660 (857)
T ss_pred ---------------------------------------Cccc-----ccchhH--------------------------
Confidence 7776 444322
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceee-eeeeeecCc
Q psy2406 246 KLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN-TKYGIIKTD 324 (464)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~-~~~~~i~Ts 324 (464)
.+++++++. |++||||||||++++. +++.||++|+.+.+. .....++..
T Consensus 661 ----------------~l~~~v~~~-p~~vLllDEieka~~~-------------v~~~Ll~ile~g~l~d~~gr~vd~r 710 (857)
T PRK10865 661 ----------------YLTEAVRRR-PYSVILLDEVEKAHPD-------------VFNILLQVLDDGRLTDGQGRTVDFR 710 (857)
T ss_pred ----------------HHHHHHHhC-CCCeEEEeehhhCCHH-------------HHHHHHHHHhhCceecCCceEEeec
Confidence 457778777 9999999999999865 788999999754333 223456777
Q ss_pred eeEeeccCCcccc---------------------CCCCCchhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHH
Q psy2406 325 HILFIASGAFHLA---------------------KPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALL 383 (464)
Q Consensus 325 nil~I~ag~f~~~---------------------~p~~f~PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll 383 (464)
|.++|+|++.... ....|+|||++|+|.++.|.||+.+++.+|++ ..+.++.+.+
T Consensus 711 n~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~----~~L~~l~~rl 786 (857)
T PRK10865 711 NTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQ----IQLQRLYKRL 786 (857)
T ss_pred ccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHH----HHHHHHHHHH
Confidence 7777777664210 02359999999999999999999999999995 5666665666
Q ss_pred hhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcc
Q psy2406 384 ATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN 433 (464)
Q Consensus 384 ~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~ 433 (464)
...|+.+.++++++++|++.+|++ .+|||+|+++|++.+.+++.+
T Consensus 787 ~~~gi~l~is~~al~~L~~~gy~~-----~~GARpL~r~I~~~i~~~la~ 831 (857)
T PRK10865 787 EERGYEIHISDEALKLLSENGYDP-----VYGARPLKRAIQQQIENPLAQ 831 (857)
T ss_pred HhCCCcCcCCHHHHHHHHHcCCCc-----cCChHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999 899999999999998887644
No 15
>KOG1051|consensus
Probab=100.00 E-value=1.2e-34 Score=321.98 Aligned_cols=265 Identities=19% Similarity=0.190 Sum_probs=218.4
Q ss_pred hhhhhccCccccccchhhhhccCchhHhhhhhhcchhHHHHhhhhhcccccccCCCCCCccccccCCCcceEEEecCCCc
Q psy2406 4 HEIFNNIGVKAVKIGTNACENAPSANNLRNKFGIRKAILKASVYIDAPNTRANNISRNNPVIRENNVILDMVIKVLLLVG 83 (464)
Q Consensus 4 ~~~~~~~gi~~~k~~~~~~e~~~~~~~~l~~~~igq~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~G 83 (464)
|-.|-.+|||+.+..++++++++.|++.|++.|+||++++.+|+.+++++|.|+.++ .|. ..+||.||+|+|
T Consensus 532 ~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~-~~~-------awflflGpdgvG 603 (898)
T KOG1051|consen 532 EVVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDP-NPD-------AWFLFLGPDGVG 603 (898)
T ss_pred hhhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCC-CCC-------eEEEEECCCchh
Confidence 345778999999999999999999999999999999999999999999999999876 344 459999999999
Q ss_pred hHHHHHHHHHHh---CCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy2406 84 KTEIARRLAKLS---NAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSK 160 (464)
Q Consensus 84 KT~LAr~lA~~l---~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (464)
||.||++||..+ .-.|+++|+++|.+ |+.++|+
T Consensus 604 Kt~lAkaLA~~~Fgse~~~IriDmse~~e-------------------------------------------vskligs- 639 (898)
T KOG1051|consen 604 KTELAKALAEYVFGSEENFIRLDMSEFQE-------------------------------------------VSKLIGS- 639 (898)
T ss_pred HHHHHHHHHHHHcCCccceEEechhhhhh-------------------------------------------hhhccCC-
Confidence 999999999998 34599999988752 2334454
Q ss_pred CCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhcCCCCccceeee
Q psy2406 161 EKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIK 240 (464)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (464)
||||+ |++++|
T Consensus 640 -------------------------------------------p~gyv-----G~e~gg--------------------- 650 (898)
T KOG1051|consen 640 -------------------------------------------PPGYV-----GKEEGG--------------------- 650 (898)
T ss_pred -------------------------------------------Ccccc-----cchhHH---------------------
Confidence 48896 555544
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeee-eee
Q psy2406 241 IREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYG 319 (464)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~-~~~ 319 (464)
.+|||+++. ||+|||||||||+|+. +++.|||+||.+.++. ...
T Consensus 651 ---------------------~Lteavrrr-P~sVVLfdeIEkAh~~-------------v~n~llq~lD~GrltDs~Gr 695 (898)
T KOG1051|consen 651 ---------------------QLTEAVKRR-PYSVVLFEEIEKAHPD-------------VLNILLQLLDRGRLTDSHGR 695 (898)
T ss_pred ---------------------HHHHHHhcC-CceEEEEechhhcCHH-------------HHHHHHHHHhcCccccCCCc
Confidence 569999999 9999999999999976 7789999998333332 233
Q ss_pred eecCceeEeeccCCcc--------c------------------------cCC----CCCchhhhccCCeEEEcCCCCHHH
Q psy2406 320 IIKTDHILFIASGAFH--------L------------------------AKP----SDLIPELQGRFPIRVELDSLSISD 363 (464)
Q Consensus 320 ~i~Tsnil~I~ag~f~--------~------------------------~~p----~~f~PEfl~R~d~iV~f~~Lt~~e 363 (464)
.|+.+|++||+|.+.. . .-+ ..|+|||+||+|.++.|.+|+.++
T Consensus 696 ~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~ 775 (898)
T KOG1051|consen 696 EVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDE 775 (898)
T ss_pred EeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeecccchhh
Confidence 5555666666553210 0 002 468999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcc
Q psy2406 364 FTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN 433 (464)
Q Consensus 364 l~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~ 433 (464)
+.+|+ +..+.+..+.+..+++.+.+++.+.++++..+|++ .||||++++.|++.+.+.+..
T Consensus 776 ~~~i~----~~~~~e~~~r~~~~~~~~~v~~~~~~~v~~~~~d~-----~ygAr~ikr~i~~~~~~~la~ 836 (898)
T KOG1051|consen 776 LIEIV----NKQLTEIEKRLEERELLLLVTDRVDDKVLFKGYDF-----DYGARPIKRSIEERFENRLAE 836 (898)
T ss_pred Hhhhh----hhHHHHHHHHhhhhHHHHHHHHHHHhhhhhcCcCh-----HHHhhHHHHHHHHHHHHHHhh
Confidence 99999 56777777888888899999999999999999999 899999999999988876533
No 16
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.8e-28 Score=242.83 Aligned_cols=207 Identities=23% Similarity=0.328 Sum_probs=164.2
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 149 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~ 149 (464)
.|+|+|||||||||||.|||++|+.+++.||++.+|++++ .|+|+. ..+++++|..|
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq-KYiGEG-aRlVRelF~lA--------------------- 240 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ-KYIGEG-ARLVRELFELA--------------------- 240 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH-HHhccc-hHHHHHHHHHH---------------------
Confidence 7899999999999999999999999999999999999985 599986 57888887774
Q ss_pred HHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhc
Q psy2406 150 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 229 (464)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 229 (464)
T Consensus 241 -------------------------------------------------------------------------------- 240 (406)
T COG1222 241 -------------------------------------------------------------------------------- 240 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccc
Q psy2406 230 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV 309 (464)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlL 309 (464)
..+ .||||||||||+++.+|.+++ ...++.||..||++|
T Consensus 241 -------------------------------------rek--aPsIIFiDEIDAIg~kR~d~~--t~gDrEVQRTmleLL 279 (406)
T COG1222 241 -------------------------------------REK--APSIIFIDEIDAIGAKRFDSG--TSGDREVQRTMLELL 279 (406)
T ss_pred -------------------------------------hhc--CCeEEEEechhhhhcccccCC--CCchHHHHHHHHHHH
Confidence 122 489999999999999887632 224556888888775
Q ss_pred ---cCceeeeeeeeecCceeEeeccCCccccCCCCCchhhh--ccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHh
Q psy2406 310 ---EGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLA 384 (464)
Q Consensus 310 ---EG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl--~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~ 384 (464)
||. -...||-+|+|| |++..++|++| ||||..|+|+.++.+...+|++.+..
T Consensus 280 ~qlDGF--------D~~~nvKVI~AT----NR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtr----------- 336 (406)
T COG1222 280 NQLDGF--------DPRGNVKVIMAT----NRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTR----------- 336 (406)
T ss_pred HhccCC--------CCCCCeEEEEec----CCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhh-----------
Confidence 563 246788899997 58989999998 99999999999999999999964311
Q ss_pred hcCceeEeCHHH-HHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHhCCCCCCC
Q psy2406 385 TEGIKIEFVDDG-IQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGDLSINE 457 (464)
Q Consensus 385 ~~gi~L~~sdeA-l~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~~~~~~~~ 457 (464)
+..+++++ ++.||+.... ..|| .|+.++. +.-||.+-+...+||.+++.+++.+++.+.
T Consensus 337 ----kM~l~~dvd~e~la~~~~g------~sGA-dlkaict---EAGm~AiR~~R~~Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 337 ----KMNLADDVDLELLARLTEG------FSGA-DLKAICT---EAGMFAIRERRDEVTMEDFLKAVEKVVKKK 396 (406)
T ss_pred ----hccCccCcCHHHHHHhcCC------CchH-HHHHHHH---HHhHHHHHhccCeecHHHHHHHHHHHHhcc
Confidence 11333333 6688887765 4677 4888775 455666666667899999999999888855
No 17
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.92 E-value=2.9e-24 Score=241.09 Aligned_cols=276 Identities=17% Similarity=0.197 Sum_probs=191.0
Q ss_pred ccCccccccchhhhhccCchhHhhhhhhcchhHHHHhhhhhcccccccCCCCCCccccccCCCcceEEEecCCCchHHHH
Q psy2406 9 NIGVKAVKIGTNACENAPSANNLRNKFGIRKAILKASVYIDAPNTRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIA 88 (464)
Q Consensus 9 ~~gi~~~k~~~~~~e~~~~~~~~l~~~~igq~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LA 88 (464)
-++||..+.... +..+..+++.|.+-++|++.++..+...+...+... ...+..+||+||||||||++|
T Consensus 296 ~~~ip~~~~~~~-~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~----------~~~~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 296 LTDLPWGKYSKE-NLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRG----------KMKGPILCLVGPPGVGKTSLG 364 (775)
T ss_pred HHCCCCcccccc-hhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc----------CCCCceEEEECCCCCCHHHHH
Confidence 378999997775 778888999999999999999988766333221111 011236999999999999999
Q ss_pred HHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccc
Q psy2406 89 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTD 168 (464)
Q Consensus 89 r~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (464)
++||+.++.+|++++++.+.. .. + +.|..
T Consensus 365 k~iA~~l~~~~~~i~~~~~~~-------~~----~--------------------------------i~g~~-------- 393 (775)
T TIGR00763 365 KSIAKALNRKFVRFSLGGVRD-------EA----E--------------------------------IRGHR-------- 393 (775)
T ss_pred HHHHHHhcCCeEEEeCCCccc-------HH----H--------------------------------HcCCC--------
Confidence 999999999999998754321 00 0 01110
Q ss_pred cCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeHHHHHHHH
Q psy2406 169 FNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLL 248 (464)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (464)
..|.+..++.+-
T Consensus 394 ------------------------------------~~~~g~~~g~i~-------------------------------- 405 (775)
T TIGR00763 394 ------------------------------------RTYVGAMPGRII-------------------------------- 405 (775)
T ss_pred ------------------------------------CceeCCCCchHH--------------------------------
Confidence 011111100000
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCc---eeeee--eeeecC
Q psy2406 249 IDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGT---TVNTK--YGIIKT 323 (464)
Q Consensus 249 ~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~---~v~~~--~~~i~T 323 (464)
+.+++|.. .++||||||||++++...+ + ..+.||++||.. ..... ...++.
T Consensus 406 ------------~~l~~~~~---~~~villDEidk~~~~~~~----~-----~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 406 ------------QGLKKAKT---KNPLFLLDEIDKIGSSFRG----D-----PASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred ------------HHHHHhCc---CCCEEEEechhhcCCccCC----C-----HHHHHHHhcCHHhcCccccccCCceecc
Confidence 01112211 3459999999999864321 2 235899999842 11111 235678
Q ss_pred ceeEeeccCCccccCCCCCchhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCc---eeEeCHHHHHHH
Q psy2406 324 DHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGI---KIEFVDDGIQRL 400 (464)
Q Consensus 324 snil~I~ag~f~~~~p~~f~PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi---~L~~sdeAl~~L 400 (464)
++++||+|+ +.+..++|+|++||+ +|.|++|+.+++.+|++ ..+..+. +..+|+ .+.++++++.+|
T Consensus 462 s~v~~I~Tt----N~~~~i~~~L~~R~~-vi~~~~~~~~e~~~I~~---~~l~~~~---~~~~~l~~~~~~~~~~~l~~i 530 (775)
T TIGR00763 462 SKVIFIATA----NSIDTIPRPLLDRME-VIELSGYTEEEKLEIAK---KYLIPKA---LEDHGLKPDELKITDEALLLL 530 (775)
T ss_pred CCEEEEEec----CCchhCCHHHhCCee-EEecCCCCHHHHHHHHH---HHHHHHH---HHHcCCCcceEEECHHHHHHH
Confidence 999999987 456679999999996 57999999999999996 3344333 333344 689999999999
Q ss_pred HHHhhccccCCCccChhHHHHHHHHHHHHHhcccCC-C--------ceeecHHHHHhHhCCCCC
Q psy2406 401 AEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNN-I--------SLLVDADYVNSRLGDLSI 455 (464)
Q Consensus 401 A~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~-~--------~v~I~~e~v~~~~~~~~~ 455 (464)
++ +|.. .+|+|+|++.|++++...++.+.. . .+.|+.+.++++++.--+
T Consensus 531 ~~-~~~~-----e~g~R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg~~~~ 588 (775)
T TIGR00763 531 IK-YYTR-----EAGVRNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLGKPVF 588 (775)
T ss_pred HH-hcCh-----hcCChHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcCcccc
Confidence 99 5665 799999999999999988776442 1 179999999999885433
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.92 E-value=3.9e-25 Score=215.92 Aligned_cols=235 Identities=20% Similarity=0.238 Sum_probs=171.2
Q ss_pred hhhcchhHHHHhhhhhcccccccCCCCCCccccccCCCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeecccc
Q psy2406 34 KFGIRKAILKASVYIDAPNTRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 113 (464)
Q Consensus 34 ~~~igq~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyv 113 (464)
.-||||.+++..-..-..+. .| |....++.|+++|||||||||||++||+||+++++||+.+.++++. ..||
T Consensus 121 ddViGqEeAK~kcrli~~yL------en-Pe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~li-GehV 192 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYL------EN-PERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELI-GEHV 192 (368)
T ss_pred hhhhchHHHHHHHHHHHHHh------hC-hHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHH-HHHh
Confidence 45799999986654433443 23 3334578999999999999999999999999999999999999886 3467
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCC
Q psy2406 114 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 193 (464)
Q Consensus 114 G~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (464)
|+ ....||+|++.|
T Consensus 193 Gd-gar~Ihely~rA----------------------------------------------------------------- 206 (368)
T COG1223 193 GD-GARRIHELYERA----------------------------------------------------------------- 206 (368)
T ss_pred hh-HHHHHHHHHHHH-----------------------------------------------------------------
Confidence 75 455667776663
Q ss_pred cEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q psy2406 194 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 273 (464)
Q Consensus 194 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~ 273 (464)
... .|
T Consensus 207 -------------------------------------------------------------------------~~~--aP 211 (368)
T COG1223 207 -------------------------------------------------------------------------RKA--AP 211 (368)
T ss_pred -------------------------------------------------------------------------Hhc--CC
Confidence 122 59
Q ss_pred cEEEEeccccccCcCCCC-CCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCCe
Q psy2406 274 GIIFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 352 (464)
Q Consensus 274 sVIfIDEIDK~~~~~~~~-~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d~ 352 (464)
|||||||+|.++-++... .-.|++. +.|+||+-|||- .....+++||+| ++|.-++|+..|||..
T Consensus 212 civFiDE~DAiaLdRryQelRGDVsE--iVNALLTelDgi--------~eneGVvtIaaT----N~p~~LD~aiRsRFEe 277 (368)
T COG1223 212 CIVFIDELDAIALDRRYQELRGDVSE--IVNALLTELDGI--------KENEGVVTIAAT----NRPELLDPAIRSRFEE 277 (368)
T ss_pred eEEEehhhhhhhhhhhHHHhcccHHH--HHHHHHHhccCc--------ccCCceEEEeec----CChhhcCHHHHhhhhh
Confidence 999999999998877642 3557765 788999999983 345667899997 6899999999999999
Q ss_pred EEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhc
Q psy2406 353 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSF 432 (464)
Q Consensus 353 iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~ 432 (464)
.|+|..++.+++..|++. +.+ ...+.++-. ++++++.+- .+..|.++ |++|...+.
T Consensus 278 EIEF~LP~~eEr~~ile~--------y~k-----~~Plpv~~~-~~~~~~~t~-------g~SgRdik---ekvlK~aLh 333 (368)
T COG1223 278 EIEFKLPNDEERLEILEY--------YAK-----KFPLPVDAD-LRYLAAKTK-------GMSGRDIK---EKVLKTALH 333 (368)
T ss_pred eeeeeCCChHHHHHHHHH--------HHH-----hCCCccccC-HHHHHHHhC-------CCCchhHH---HHHHHHHHH
Confidence 999999999999999852 111 234455444 778887775 45667654 333333332
Q ss_pred cc-CCCceeecHHHHHhHhCCCCC
Q psy2406 433 NS-NNISLLVDADYVNSRLGDLSI 455 (464)
Q Consensus 433 ~~-~~~~v~I~~e~v~~~~~~~~~ 455 (464)
.. .+..-.|+.++++.++..-+.
T Consensus 334 ~Ai~ed~e~v~~edie~al~k~r~ 357 (368)
T COG1223 334 RAIAEDREKVEREDIEKALKKERK 357 (368)
T ss_pred HHHHhchhhhhHHHHHHHHHhhcc
Confidence 21 222246889999888776443
No 19
>KOG0730|consensus
Probab=99.92 E-value=1.3e-24 Score=232.86 Aligned_cols=238 Identities=18% Similarity=0.228 Sum_probs=173.6
Q ss_pred hhHHHHhhhhhcccccccCCCCCCccccccCCCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChH
Q psy2406 39 KAILKASVYIDAPNTRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVD 118 (464)
Q Consensus 39 q~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~ 118 (464)
|.++..+|-+.++..-....- +-..|++||||||||||||++||++|++.+++|+.+.+.++. +.|+|++ |
T Consensus 443 K~elq~~V~~p~~~pe~F~r~-------Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~-sk~vGeS-E 513 (693)
T KOG0730|consen 443 KRELQQAVEWPLKHPEKFARF-------GISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF-SKYVGES-E 513 (693)
T ss_pred HHHHHHHHhhhhhchHHHHHh-------cCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH-HHhcCch-H
Confidence 566667777766544332210 113679999999999999999999999999999999999997 5799986 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEE
Q psy2406 119 TIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEI 198 (464)
Q Consensus 119 ~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (464)
..++++|+.|
T Consensus 514 r~ir~iF~kA---------------------------------------------------------------------- 523 (693)
T KOG0730|consen 514 RAIREVFRKA---------------------------------------------------------------------- 523 (693)
T ss_pred HHHHHHHHHH----------------------------------------------------------------------
Confidence 7788888774
Q ss_pred EecCCCCcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEE
Q psy2406 199 ELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFL 278 (464)
Q Consensus 199 ~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfI 278 (464)
+.+ +||||||
T Consensus 524 ---------------------------------------------------------------------R~~-aP~IiFf 533 (693)
T KOG0730|consen 524 ---------------------------------------------------------------------RQV-APCIIFF 533 (693)
T ss_pred ---------------------------------------------------------------------hhc-CCeEEeh
Confidence 222 5799999
Q ss_pred eccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc--cCCeEEEc
Q psy2406 279 DEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIRVEL 356 (464)
Q Consensus 279 DEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~--R~d~iV~f 356 (464)
||||.++..|+++++ ++++ .|.+.||+-|||.. ...|+++|++| |+|..++|++++ |||.+|.+
T Consensus 534 DEiDsi~~~R~g~~~-~v~~-RVlsqLLtEmDG~e--------~~k~V~ViAAT----NRpd~ID~ALlRPGRlD~iiyV 599 (693)
T KOG0730|consen 534 DEIDALAGSRGGSSS-GVTD-RVLSQLLTEMDGLE--------ALKNVLVIAAT----NRPDMIDPALLRPGRLDRIIYV 599 (693)
T ss_pred hhHHhHhhccCCCcc-chHH-HHHHHHHHHccccc--------ccCcEEEEecc----CChhhcCHHHcCCcccceeEee
Confidence 999999999976334 5554 48889999999843 34689999997 689999999996 99999999
Q ss_pred CCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHH-HHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccC
Q psy2406 357 DSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDD-GIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSN 435 (464)
Q Consensus 357 ~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sde-Al~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~ 435 (464)
++++.+...+|++. . + ++ ..++++ -++.||+... .|.++.|..+++..-...+.+..
T Consensus 600 plPD~~aR~~Ilk~----~-------~--kk--mp~~~~vdl~~La~~T~-------g~SGAel~~lCq~A~~~a~~e~i 657 (693)
T KOG0730|consen 600 PLPDLEARLEILKQ----C-------A--KK--MPFSEDVDLEELAQATE-------GYSGAEIVAVCQEAALLALRESI 657 (693)
T ss_pred cCccHHHHHHHHHH----H-------H--hc--CCCCccccHHHHHHHhc-------cCChHHHHHHHHHHHHHHHHHhc
Confidence 99999999999851 1 1 12 244555 5789998775 35556789988876554443333
Q ss_pred CCceeecHHHHHhHh---CCCCCCCCCCCc
Q psy2406 436 NISLLVDADYVNSRL---GDLSINEDLSRY 462 (464)
Q Consensus 436 ~~~v~I~~e~v~~~~---~~~~~~~d~~~~ 462 (464)
+. -.|+.++.++++ .+...-+++++|
T Consensus 658 ~a-~~i~~~hf~~al~~~r~s~~~~~~~~Y 686 (693)
T KOG0730|consen 658 EA-TEITWQHFEEALKAVRPSLTSELLEKY 686 (693)
T ss_pred cc-ccccHHHHHHHHHhhcccCCHHHHHHH
Confidence 22 256777776554 333344444443
No 20
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.91 E-value=1e-25 Score=210.11 Aligned_cols=80 Identities=36% Similarity=0.659 Sum_probs=66.7
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeee-eecCceeEeeccCCccccCC-----------
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLAKP----------- 339 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~-~i~Tsnil~I~ag~f~~~~p----------- 339 (464)
+++|||||||||+|++ .+.+.|+++++||+.||++||++.+....+ .++++|++||||++|.....
T Consensus 68 ~~gVVllDEidKa~~~--~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~~~~~~~~~~ 145 (171)
T PF07724_consen 68 EGGVVLLDEIDKAHPS--NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEIIDASRSGEAIE 145 (171)
T ss_dssp HHTEEEEETGGGCSHT--TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHHHCHHHCTCCH
T ss_pred chhhhhhHHHhhcccc--ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhhhhhccccccH
Confidence 5679999999999997 335789999999999999999988887665 89999999999999863211
Q ss_pred ------------CCCchhhhccCCeE
Q psy2406 340 ------------SDLIPELQGRFPIR 353 (464)
Q Consensus 340 ------------~~f~PEfl~R~d~i 353 (464)
..|+|||+||||+|
T Consensus 146 ~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 146 QEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp HHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred HHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 14999999999975
No 21
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.91 E-value=5.7e-23 Score=230.25 Aligned_cols=163 Identities=19% Similarity=0.238 Sum_probs=127.6
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccC-ceeeee--e--eeecCceeEeeccCCccccCCCCCchhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEG-TTVNTK--Y--GIIKTDHILFIASGAFHLAKPSDLIPEL 346 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG-~~v~~~--~--~~i~Tsnil~I~ag~f~~~~p~~f~PEf 346 (464)
.++|||||||||+++...+ | .+++||++||. ....+. + ..++.++++||||++ ...++|+|
T Consensus 416 ~~~villDEidk~~~~~~g----~-----~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN-----~~~i~~aL 481 (784)
T PRK10787 416 KNPLFLLDEIDKMSSDMRG----D-----PASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSN-----SMNIPAPL 481 (784)
T ss_pred CCCEEEEEChhhcccccCC----C-----HHHHHHHHhccccEEEEecccccccccCCceEEEEcCC-----CCCCCHHH
Confidence 4569999999999865321 1 45699999984 344443 2 367899999999863 34699999
Q ss_pred hccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHH
Q psy2406 347 QGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 426 (464)
Q Consensus 347 l~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~ 426 (464)
++||. +|.|.+|+.+++.+|++ ..+..+..+.....+..+.++++++++|++ +|++ .+|||+|+|.|+++
T Consensus 482 l~R~~-ii~~~~~t~eek~~Ia~---~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~-~yt~-----e~GaR~LeR~I~~i 551 (784)
T PRK10787 482 LDRME-VIRLSGYTEDEKLNIAK---RHLLPKQIERNALKKGELTVDDSAIIGIIR-YYTR-----EAGVRSLEREISKL 551 (784)
T ss_pred hccee-eeecCCCCHHHHHHHHH---HhhhHHHHHHhCCCCCeEEECHHHHHHHHH-hCCc-----ccCCcHHHHHHHHH
Confidence 99996 57999999999999997 445544444445667789999999999997 7887 89999999999999
Q ss_pred HHHHhcccCC----CceeecHHHHHhHhCCCCCCCC
Q psy2406 427 LEEVSFNSNN----ISLLVDADYVNSRLGDLSINED 458 (464)
Q Consensus 427 l~~~l~~~~~----~~v~I~~e~v~~~~~~~~~~~d 458 (464)
+...+.+... ..++||.+.+.++++.--+..+
T Consensus 552 ~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~~~~~~~ 587 (784)
T PRK10787 552 CRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYG 587 (784)
T ss_pred HHHHHHHHHhcCCCceeeecHHHHHHHhCCCccccc
Confidence 9888766421 2389999999999997665544
No 22
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1e-22 Score=220.16 Aligned_cols=165 Identities=17% Similarity=0.213 Sum_probs=133.2
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCc-eeeee--e--eeecCceeEeeccCCccccCCCCCchhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGT-TVNTK--Y--GIIKTDHILFIASGAFHLAKPSDLIPEL 346 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~-~v~~~--~--~~i~Tsnil~I~ag~f~~~~p~~f~PEf 346 (464)
.+.|++||||||++.+..+ |++. +||.+||.. ..+|. | ...|-|+++||||. |...+++.+|
T Consensus 417 ~NPv~LLDEIDKm~ss~rG----DPaS-----ALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTA----Nsl~tIP~PL 483 (782)
T COG0466 417 KNPVFLLDEIDKMGSSFRG----DPAS-----ALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATA----NSLDTIPAPL 483 (782)
T ss_pred cCCeEEeechhhccCCCCC----ChHH-----HHHhhcCHhhcCchhhccccCccchhheEEEeec----CccccCChHH
Confidence 5779999999999877543 5544 899999943 33343 3 46789999999997 3445688999
Q ss_pred hccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHH
Q psy2406 347 QGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 426 (464)
Q Consensus 347 l~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~ 426 (464)
+.|+.+ |.+..++++|-..|.+ +.++.+..+......-++.|+|+|+..|++.... ..|.|.|.|.|.++
T Consensus 484 lDRMEi-I~lsgYt~~EKl~IAk---~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTR------EAGVR~LeR~i~ki 553 (782)
T COG0466 484 LDRMEV-IRLSGYTEDEKLEIAK---RHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTR------EAGVRNLEREIAKI 553 (782)
T ss_pred hcceee-eeecCCChHHHHHHHH---HhcchHHHHHcCCCccceeecHHHHHHHHHHHhH------hhhhhHHHHHHHHH
Confidence 999965 7999999999999997 6777777666666666899999999999998876 69999999999999
Q ss_pred HHHHhcccCCCc----eeecHHHHHhHhCCCCCCCCC
Q psy2406 427 LEEVSFNSNNIS----LLVDADYVNSRLGDLSINEDL 459 (464)
Q Consensus 427 l~~~l~~~~~~~----v~I~~e~v~~~~~~~~~~~d~ 459 (464)
++.....+.... +.||...++++++.-.+..+.
T Consensus 554 ~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~~f~~~~ 590 (782)
T COG0466 554 CRKAAKKILLKKEKSIVKIDEKNLKKYLGVPVFRYGK 590 (782)
T ss_pred HHHHHHHHHhcCcccceeeCHHHHHHHhCCcccCccc
Confidence 888776654332 589999999999998887764
No 23
>KOG0733|consensus
Probab=99.89 E-value=8.2e-23 Score=217.05 Aligned_cols=210 Identities=20% Similarity=0.310 Sum_probs=152.8
Q ss_pred CCCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 69 NVILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 148 (464)
Q Consensus 69 ~~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~ 148 (464)
..|.|||||||||||||.|||++|++.|.+|+.+-++++. ..|||++ |..++.+|..|
T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELl-NkYVGES-ErAVR~vFqRA-------------------- 600 (802)
T KOG0733|consen 543 DAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELL-NKYVGES-ERAVRQVFQRA-------------------- 600 (802)
T ss_pred CCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHH-HHHhhhH-HHHHHHHHHHh--------------------
Confidence 3789999999999999999999999999999999999996 5799986 56666666553
Q ss_pred HHHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhh
Q psy2406 149 EDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSV 228 (464)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~ 228 (464)
T Consensus 601 -------------------------------------------------------------------------------- 600 (802)
T KOG0733|consen 601 -------------------------------------------------------------------------------- 600 (802)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhcc
Q psy2406 229 IGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPL 308 (464)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLql 308 (464)
|+..||||||||||.+++.|+.. +.. ....+.+.||.-
T Consensus 601 ----------------------------------------R~saPCVIFFDEiDaL~p~R~~~-~s~-~s~RvvNqLLtE 638 (802)
T KOG0733|consen 601 ----------------------------------------RASAPCVIFFDEIDALVPRRSDE-GSS-VSSRVVNQLLTE 638 (802)
T ss_pred ----------------------------------------hcCCCeEEEecchhhcCcccCCC-Cch-hHHHHHHHHHHH
Confidence 22369999999999999998862 223 344588899999
Q ss_pred ccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhh--ccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhc
Q psy2406 309 VEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATE 386 (464)
Q Consensus 309 LEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl--~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~ 386 (464)
|||.. ...++.+|+|| ++|.-++|++| ||||.+..+..++.++...||+. . .+..
T Consensus 639 lDGl~--------~R~gV~viaAT----NRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~----~-------tkn~ 695 (802)
T KOG0733|consen 639 LDGLE--------ERRGVYVIAAT----NRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKT----I-------TKNT 695 (802)
T ss_pred hcccc--------cccceEEEeec----CCCcccchhhcCCCccCceeeecCCCHHHHHHHHHH----H-------hccC
Confidence 99842 45678889987 68988999988 99999999999999999999952 2 1212
Q ss_pred CceeEeCHHH-HHHHHHHhhccccCCCccChhHHHHHHHH----HHHHHhcccCCCc---------eeecHHHHHhHhCC
Q psy2406 387 GIKIEFVDDG-IQRLAEIAYCINERTENIGARRLYTAMEK----LLEEVSFNSNNIS---------LLVDADYVNSRLGD 452 (464)
Q Consensus 387 gi~L~~sdeA-l~~LA~~a~~~~~~~~~~GAR~L~r~IE~----~l~~~l~~~~~~~---------v~I~~e~v~~~~~~ 452 (464)
+. -+++++ ++.||+..... .-.|| .|.-++.+ .|+..+++...+. ++++-.+++.++++
T Consensus 696 k~--pl~~dVdl~eia~~~~c~----gftGA-DLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~ 768 (802)
T KOG0733|consen 696 KP--PLSSDVDLDEIARNTKCE----GFTGA-DLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQR 768 (802)
T ss_pred CC--CCCcccCHHHHhhccccc----CCchh-hHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHh
Confidence 22 333433 77787665421 02455 46666554 3444445443322 35666677666544
No 24
>KOG0728|consensus
Probab=99.89 E-value=3.5e-23 Score=201.46 Aligned_cols=209 Identities=22% Similarity=0.321 Sum_probs=159.1
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 149 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~ 149 (464)
+|+++||+||||+|||.|||++|....|.||+++++++++ .|+|+. ..|+++||-.|
T Consensus 180 QPKGvlLygppgtGktLlaraVahht~c~firvsgselvq-k~igeg-srmvrelfvma--------------------- 236 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-KYIGEG-SRMVRELFVMA--------------------- 236 (404)
T ss_pred CCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH-HHhhhh-HHHHHHHHHHH---------------------
Confidence 7899999999999999999999999999999999999985 588875 56777776553
Q ss_pred HHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhc
Q psy2406 150 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 229 (464)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 229 (464)
T Consensus 237 -------------------------------------------------------------------------------- 236 (404)
T KOG0728|consen 237 -------------------------------------------------------------------------------- 236 (404)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhcc-
Q psy2406 230 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPL- 308 (464)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLql- 308 (464)
.+. .|+|||+||||++++.+..+++. ++..||..+|.+
T Consensus 237 -------------------------------------reh--apsiifmdeidsigs~r~e~~~g--gdsevqrtmlell 275 (404)
T KOG0728|consen 237 -------------------------------------REH--APSIIFMDEIDSIGSSRVESGSG--GDSEVQRTMLELL 275 (404)
T ss_pred -------------------------------------Hhc--CCceEeeecccccccccccCCCC--ccHHHHHHHHHHH
Confidence 112 48999999999999988653322 233466666655
Q ss_pred --ccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhh--ccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHh
Q psy2406 309 --VEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLA 384 (464)
Q Consensus 309 --LEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl--~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~ 384 (464)
|||. -.|.||-+|+++ ++..-++|+++ +|+|.-|+|+|++++...+|++.+.+. .--
T Consensus 276 nqldgf--------eatknikvimat----nridild~allrpgridrkiefp~p~e~ar~~ilkihsrk-------mnl 336 (404)
T KOG0728|consen 276 NQLDGF--------EATKNIKVIMAT----NRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRK-------MNL 336 (404)
T ss_pred Hhcccc--------ccccceEEEEec----cccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhh-------hch
Confidence 4664 357888889887 35556888887 899999999999999999999754222 223
Q ss_pred hcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHhCCCCCCCC
Q psy2406 385 TEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGDLSINED 458 (464)
Q Consensus 385 ~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~~~~~~~~d 458 (464)
.+||++ +.||+.--. ..||- ++.++. +.-||.+-+..+++|.++++-+++.+|++.+
T Consensus 337 ~rgi~l-------~kiaekm~g------asgae-vk~vct---eagm~alrerrvhvtqedfemav~kvm~k~~ 393 (404)
T KOG0728|consen 337 TRGINL-------RKIAEKMPG------ASGAE-VKGVCT---EAGMYALRERRVHVTQEDFEMAVAKVMQKDS 393 (404)
T ss_pred hcccCH-------HHHHHhCCC------Cccch-hhhhhh---hhhHHHHHHhhccccHHHHHHHHHHHHhccc
Confidence 567753 477766432 35663 666654 5567778777799999999999999998754
No 25
>KOG0738|consensus
Probab=99.88 E-value=1.8e-22 Score=205.82 Aligned_cols=185 Identities=16% Similarity=0.247 Sum_probs=138.7
Q ss_pred CC-cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 70 VI-LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 148 (464)
Q Consensus 70 ~p-~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~ 148 (464)
.| +++|++||||||||+|||++|.++|+.|+.++.+.++ +.|.|++ |.|++-||+.|-
T Consensus 243 rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt-SKwRGeS-EKlvRlLFemAR------------------- 301 (491)
T KOG0738|consen 243 RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT-SKWRGES-EKLVRLLFEMAR------------------- 301 (491)
T ss_pred cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh-hhhccch-HHHHHHHHHHHH-------------------
Confidence 45 8899999999999999999999999999999999997 5688875 899999988850
Q ss_pred HHHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhh
Q psy2406 149 EDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSV 228 (464)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~ 228 (464)
T Consensus 302 -------------------------------------------------------------------------------- 301 (491)
T KOG0738|consen 302 -------------------------------------------------------------------------------- 301 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhcc
Q psy2406 229 IGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPL 308 (464)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLql 308 (464)
.. .|++|||||||.+|..+++++ .+...+.+...||..
T Consensus 302 ---------------------------------------fy--APStIFiDEIDslcs~RG~s~-EHEaSRRvKsELLvQ 339 (491)
T KOG0738|consen 302 ---------------------------------------FY--APSTIFIDEIDSLCSQRGGSS-EHEASRRVKSELLVQ 339 (491)
T ss_pred ---------------------------------------Hh--CCceeehhhHHHHHhcCCCcc-chhHHHHHHHHHHHH
Confidence 11 489999999999999998743 334455699999999
Q ss_pred ccCceeeeeeeeecCceeEe-eccCCccccCCCCCchhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcC
Q psy2406 309 VEGTTVNTKYGIIKTDHILF-IASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEG 387 (464)
Q Consensus 309 LEG~~v~~~~~~i~Tsnil~-I~ag~f~~~~p~~f~PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~g 387 (464)
|||-.-+. ..+.+++ +++| +-||+++.+|++||.-.|.++.++.+....+++. .+. .
T Consensus 340 mDG~~~t~-----e~~k~VmVLAAT----N~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~----~l~---------~ 397 (491)
T KOG0738|consen 340 MDGVQGTL-----ENSKVVMVLAAT----NFPWDIDEALRRRLEKRIYIPLPDAEARSALIKI----LLR---------S 397 (491)
T ss_pred hhcccccc-----ccceeEEEEecc----CCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHH----hhc---------c
Confidence 99853322 2244554 4555 4599999999999999999999999998888852 221 2
Q ss_pred ceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHH
Q psy2406 388 IKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 427 (464)
Q Consensus 388 i~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l 427 (464)
+.+ -++=-++.||+.... |.+-.+.+++...-
T Consensus 398 ~~~-~~~~~~~~lae~~eG-------ySGaDI~nvCreAs 429 (491)
T KOG0738|consen 398 VEL-DDPVNLEDLAERSEG-------YSGADITNVCREAS 429 (491)
T ss_pred ccC-CCCccHHHHHHHhcC-------CChHHHHHHHHHHH
Confidence 211 122336677777753 33345666665443
No 26
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.88 E-value=8.8e-22 Score=202.03 Aligned_cols=139 Identities=27% Similarity=0.371 Sum_probs=104.8
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCC-CCchhhhccC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS-DLIPELQGRF 350 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~-~f~PEfl~R~ 350 (464)
...|+||||||++.+. +|+.||+.+|.+++ ++|+||+ +||+ .+.|+++||+
T Consensus 104 r~tiLflDEIHRfnK~-------------QQD~lLp~vE~G~i------------ilIGATT---ENPsF~ln~ALlSR~ 155 (436)
T COG2256 104 RRTILFLDEIHRFNKA-------------QQDALLPHVENGTI------------ILIGATT---ENPSFELNPALLSRA 155 (436)
T ss_pred CceEEEEehhhhcChh-------------hhhhhhhhhcCCeE------------EEEeccC---CCCCeeecHHHhhhh
Confidence 3579999999999875 78899999997754 7788874 7886 5899999999
Q ss_pred CeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHH
Q psy2406 351 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 430 (464)
Q Consensus 351 d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~ 430 (464)
- +++|+||+.+++.++++. .+....+ ...+..+.++++|+++|+..+ +++||.+.+.+|-.....
T Consensus 156 ~-vf~lk~L~~~di~~~l~r---a~~~~~r---gl~~~~~~i~~~a~~~l~~~s--------~GD~R~aLN~LE~~~~~~ 220 (436)
T COG2256 156 R-VFELKPLSSEDIKKLLKR---ALLDEER---GLGGQIIVLDEEALDYLVRLS--------NGDARRALNLLELAALSA 220 (436)
T ss_pred h-eeeeecCCHHHHHHHHHH---HHhhhhc---CCCcccccCCHHHHHHHHHhc--------CchHHHHHHHHHHHHHhc
Confidence 6 479999999999999962 2222211 112334679999999999988 689999999999765421
Q ss_pred hcccCCCceeecHHHHHhHhCCCCCCCC
Q psy2406 431 SFNSNNISLLVDADYVNSRLGDLSINED 458 (464)
Q Consensus 431 l~~~~~~~v~I~~e~v~~~~~~~~~~~d 458 (464)
+ + .+ .++.+.+++.+++.....|
T Consensus 221 --~-~-~~-~~~~~~l~~~l~~~~~~~D 243 (436)
T COG2256 221 --E-P-DE-VLILELLEEILQRRSARFD 243 (436)
T ss_pred --C-C-Cc-ccCHHHHHHHHhhhhhccC
Confidence 1 1 12 3448888888887655444
No 27
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.87 E-value=1.5e-21 Score=188.67 Aligned_cols=117 Identities=21% Similarity=0.336 Sum_probs=82.2
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee--------eeecCceeEeeccCCccccCCCCCc
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY--------GIIKTDHILFIASGAFHLAKPSDLI 343 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~--------~~i~Tsnil~I~ag~f~~~~p~~f~ 343 (464)
+..|+||||||++.+. +|+.||+.||++.++.-. ..++-.+..+|+|| ++...+.
T Consensus 101 ~~~ILFIDEIHRlnk~-------------~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligAT----Tr~g~ls 163 (233)
T PF05496_consen 101 EGDILFIDEIHRLNKA-------------QQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGAT----TRAGLLS 163 (233)
T ss_dssp TT-EEEECTCCC--HH-------------HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEE----SSGCCTS
T ss_pred CCcEEEEechhhccHH-------------HHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeee----ccccccc
Confidence 5789999999999865 888999999998887532 23334445667775 3666789
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHH
Q psy2406 344 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 423 (464)
Q Consensus 344 PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~I 423 (464)
++|.+||..+..++.++.+++.+|++.. ..-..+.+++++..+||+++ .+--|-..|++
T Consensus 164 ~pLrdRFgi~~~l~~Y~~~el~~Iv~r~-------------a~~l~i~i~~~~~~~Ia~rs--------rGtPRiAnrll 222 (233)
T PF05496_consen 164 SPLRDRFGIVLRLEFYSEEELAKIVKRS-------------ARILNIEIDEDAAEEIARRS--------RGTPRIANRLL 222 (233)
T ss_dssp HCCCTTSSEEEE----THHHHHHHHHHC-------------CHCTT-EE-HHHHHHHHHCT--------TTSHHHHHHHH
T ss_pred hhHHhhcceecchhcCCHHHHHHHHHHH-------------HHHhCCCcCHHHHHHHHHhc--------CCChHHHHHHH
Confidence 9999999998899999999999999631 12346689999999999888 56678777877
Q ss_pred HHH
Q psy2406 424 EKL 426 (464)
Q Consensus 424 E~~ 426 (464)
.++
T Consensus 223 ~rv 225 (233)
T PF05496_consen 223 RRV 225 (233)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 28
>KOG0733|consensus
Probab=99.86 E-value=8.2e-22 Score=209.53 Aligned_cols=148 Identities=28% Similarity=0.423 Sum_probs=121.8
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 149 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~ 149 (464)
.|+|+||+||||||||+||+++|.++++||+.+++++++ +||.|++ |.-|++||+.|.
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeiv-SGvSGES-EkkiRelF~~A~-------------------- 279 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIV-SGVSGES-EKKIRELFDQAK-------------------- 279 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhh-cccCccc-HHHHHHHHHHHh--------------------
Confidence 669999999999999999999999999999999999997 6888887 555777877752
Q ss_pred HHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhc
Q psy2406 150 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 229 (464)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 229 (464)
T Consensus 280 -------------------------------------------------------------------------------- 279 (802)
T KOG0733|consen 280 -------------------------------------------------------------------------------- 279 (802)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccc
Q psy2406 230 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV 309 (464)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlL 309 (464)
.. .||||||||||.++++|.. .+.+-.++ +...||..|
T Consensus 280 --------------------------------------~~--aPcivFiDeIDAI~pkRe~-aqreMErR-iVaQLlt~m 317 (802)
T KOG0733|consen 280 --------------------------------------SN--APCIVFIDEIDAITPKREE-AQREMERR-IVAQLLTSM 317 (802)
T ss_pred --------------------------------------cc--CCeEEEeecccccccchhh-HHHHHHHH-HHHHHHHhh
Confidence 22 4899999999999999875 23333333 455799999
Q ss_pred cCceeeeeeeeecCceeEeeccCCccccCCCCCchhhh--ccCCeEEEcCCCCHHHHHHHHH
Q psy2406 310 EGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVELDSLSISDFTRIMT 369 (464)
Q Consensus 310 EG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl--~R~d~iV~f~~Lt~~el~~Il~ 369 (464)
|+-... .-.+..+++|+|| ++|..++|+|+ ||||..|.+.-+++.++.+||.
T Consensus 318 D~l~~~----~~~g~~VlVIgAT----nRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~ 371 (802)
T KOG0733|consen 318 DELSNE----KTKGDPVLVIGAT----NRPDSLDPALRRAGRFDREICLGVPSETAREEILR 371 (802)
T ss_pred hccccc----ccCCCCeEEEecC----CCCcccCHHHhccccccceeeecCCchHHHHHHHH
Confidence 974321 1134568999997 69999999997 9999999999999999999995
No 29
>KOG0731|consensus
Probab=99.86 E-value=1.5e-21 Score=214.16 Aligned_cols=206 Identities=20% Similarity=0.311 Sum_probs=151.4
Q ss_pred CCCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 69 NVILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 148 (464)
Q Consensus 69 ~~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~ 148 (464)
.+|+++||+||||||||.|||++|.+.|+||+.+++|+|++. ++|.. .+-+++||..|
T Consensus 342 KiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~-~~g~~-asrvr~lf~~a-------------------- 399 (774)
T KOG0731|consen 342 KIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM-FVGVG-ASRVRDLFPLA-------------------- 399 (774)
T ss_pred cCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH-hcccc-hHHHHHHHHHh--------------------
Confidence 489999999999999999999999999999999999999864 55543 45556665542
Q ss_pred HHHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhh
Q psy2406 149 EDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSV 228 (464)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~ 228 (464)
T Consensus 400 -------------------------------------------------------------------------------- 399 (774)
T KOG0731|consen 400 -------------------------------------------------------------------------------- 399 (774)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCC--CCCCCcchhhHHHhhh
Q psy2406 229 IGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQ--NNNTDISRAGVQRDLL 306 (464)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~--~~~~d~~~~gvq~~LL 306 (464)
.. +.||||||||||.++..+++ ..+.+..++...+.||
T Consensus 400 --------------------------------------r~--~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll 439 (774)
T KOG0731|consen 400 --------------------------------------RK--NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLL 439 (774)
T ss_pred --------------------------------------hc--cCCeEEEecccccccccccccccCCCChHHHHHHHHHH
Confidence 12 25999999999999998853 2466777888899999
Q ss_pred ccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhh--ccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHh
Q psy2406 307 PLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLA 384 (464)
Q Consensus 307 qlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl--~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~ 384 (464)
.-|||.. .+++++++++| ++|.-++|+|+ +|||..|.+..++.....+|++.+
T Consensus 440 ~emDgf~--------~~~~vi~~a~t----nr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h------------- 494 (774)
T KOG0731|consen 440 VEMDGFE--------TSKGVIVLAAT----NRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVH------------- 494 (774)
T ss_pred HHhcCCc--------CCCcEEEEecc----CCccccCHHhcCCCccccceeccCCchhhhHHHHHHH-------------
Confidence 9999853 35778999997 68888999998 999999999999999999999621
Q ss_pred hcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHhC
Q psy2406 385 TEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLG 451 (464)
Q Consensus 385 ~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~~ 451 (464)
.+++++..++.-+..||...-. ..||- |.+++...-.... ....-.|+..+++.++.
T Consensus 495 ~~~~~~~~e~~dl~~~a~~t~g------f~gad-l~n~~neaa~~a~---r~~~~~i~~~~~~~a~~ 551 (774)
T KOG0731|consen 495 LRKKKLDDEDVDLSKLASLTPG------FSGAD-LANLCNEAALLAA---RKGLREIGTKDLEYAIE 551 (774)
T ss_pred hhccCCCcchhhHHHHHhcCCC------CcHHH-HHhhhhHHHHHHH---HhccCccchhhHHHHHH
Confidence 2345555455555557766543 46764 6776654322111 11123455555555544
No 30
>KOG2004|consensus
Probab=99.86 E-value=3.6e-21 Score=207.48 Aligned_cols=164 Identities=21% Similarity=0.307 Sum_probs=129.8
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCc-eeeee----eeeecCceeEeeccCCccccCCCCCchhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGT-TVNTK----YGIIKTDHILFIASGAFHLAKPSDLIPEL 346 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~-~v~~~----~~~i~Tsnil~I~ag~f~~~~p~~f~PEf 346 (464)
.+.+++||||||+++... .|++. +||.+||.. ..+|. ++.++-|.++||||.+ ....++|+|
T Consensus 505 ~NPliLiDEvDKlG~g~q----GDPas-----ALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN----~idtIP~pL 571 (906)
T KOG2004|consen 505 ENPLILIDEVDKLGSGHQ----GDPAS-----ALLELLDPEQNANFLDHYLDVPVDLSKVLFICTAN----VIDTIPPPL 571 (906)
T ss_pred CCceEEeehhhhhCCCCC----CChHH-----HHHHhcChhhccchhhhccccccchhheEEEEecc----ccccCChhh
Confidence 477999999999984322 35544 899999943 22332 2688999999999973 455688999
Q ss_pred hccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHH
Q psy2406 347 QGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 426 (464)
Q Consensus 347 l~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~ 426 (464)
+.|+.. |++..+..+|-.+|.. +.+..+..+.+....-.+.++++|+..|.++.+. ..|.|.|.+-|+++
T Consensus 572 lDRMEv-IelsGYv~eEKv~IA~---~yLip~a~~~~gl~~e~v~is~~al~~lI~~Ycr------EaGVRnLqk~iekI 641 (906)
T KOG2004|consen 572 LDRMEV-IELSGYVAEEKVKIAE---RYLIPQALKDCGLKPEQVKISDDALLALIERYCR------EAGVRNLQKQIEKI 641 (906)
T ss_pred hhhhhe-eeccCccHHHHHHHHH---HhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHH------HHhHHHHHHHHHHH
Confidence 999965 7999999999999997 7788877776655555789999999999999887 69999999999999
Q ss_pred HHHHhcccCC--------------------------------------CceeecHHHHHhHhCCCCCCCC
Q psy2406 427 LEEVSFNSNN--------------------------------------ISLLVDADYVNSRLGDLSINED 458 (464)
Q Consensus 427 l~~~l~~~~~--------------------------------------~~v~I~~e~v~~~~~~~~~~~d 458 (464)
.+..++.+.. ..+.|+.+.+.+++++-++.++
T Consensus 642 ~Rk~Al~vv~~~~~~~~~~~~~~~~~~~~~~e~~~~~t~~~~~~~~~~~~i~I~~~nL~d~lG~P~f~~e 711 (906)
T KOG2004|consen 642 CRKVALKVVEGENSKEESAEKNGRESTEKSIEEAESSTSGADLLPEMPENIEIDESNLQDILGPPVFTSE 711 (906)
T ss_pred HHHHHHHHHHhhcccccccccccccccccccccccccCcccccccCCcceeeecHHHHHHHhCCCcccHH
Confidence 8887654311 0188999999999998877654
No 31
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.85 E-value=3.3e-21 Score=197.62 Aligned_cols=157 Identities=15% Similarity=0.105 Sum_probs=120.4
Q ss_pred CCCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 69 NVILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 148 (464)
Q Consensus 69 ~~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~ 148 (464)
..|.+++||||||||||.+|+++|+++|++|+.++++++. ++|+|+. |..++++|+.|-+++
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~-sk~vGEs-Ek~IR~~F~~A~~~a---------------- 207 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELE-SENAGEP-GKLIRQRYREAADII---------------- 207 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh-cCcCCcH-HHHHHHHHHHHHHHh----------------
Confidence 3678999999999999999999999999999999999986 6799974 788888887751000
Q ss_pred HHHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhh
Q psy2406 149 EDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSV 228 (464)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~ 228 (464)
T Consensus 208 -------------------------------------------------------------------------------- 207 (413)
T PLN00020 208 -------------------------------------------------------------------------------- 207 (413)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhcc
Q psy2406 229 IGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPL 308 (464)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLql 308 (464)
++...||||||||||++++.+.+ ....+...-+...||.+
T Consensus 208 ---------------------------------------~~~~aPcVLFIDEIDA~~g~r~~-~~~tv~~qiV~~tLLnl 247 (413)
T PLN00020 208 ---------------------------------------KKKGKMSCLFINDLDAGAGRFGT-TQYTVNNQMVNGTLMNI 247 (413)
T ss_pred ---------------------------------------hccCCCeEEEEehhhhcCCCCCC-CCcchHHHHHHHHHHHH
Confidence 11126899999999999998764 33444455566789999
Q ss_pred ccCcee-eee--e-eeecCceeEeeccCCccccCCCCCchhhhc--cCCeEEEcCCCCHHHHHHHHH
Q psy2406 309 VEGTTV-NTK--Y-GIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIRVELDSLSISDFTRIMT 369 (464)
Q Consensus 309 LEG~~v-~~~--~-~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~--R~d~iV~f~~Lt~~el~~Il~ 369 (464)
||+-+. ... + ..-.+.++.+|+|| ++|+.++|+|++ |||..+ ..++.+++..|++
T Consensus 248 ~D~p~~v~l~G~w~~~~~~~~V~VIaTT----Nrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~ 308 (413)
T PLN00020 248 ADNPTNVSLGGDWREKEEIPRVPIIVTG----NDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVH 308 (413)
T ss_pred hcCCccccccccccccccCCCceEEEeC----CCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHH
Confidence 986321 110 0 11245678888887 689999999997 999964 5799999999995
No 32
>KOG0734|consensus
Probab=99.85 E-value=3.4e-21 Score=202.36 Aligned_cols=207 Identities=20% Similarity=0.247 Sum_probs=146.6
Q ss_pred ccCCCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 67 ENNVILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAED 146 (464)
Q Consensus 67 ~~~~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~ 146 (464)
+...|++|||.||||||||.|||++|.+.|+||+...+|+|-+. |||... .-+++||..|
T Consensus 333 GGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm-~VGvGA-rRVRdLF~aA------------------ 392 (752)
T KOG0734|consen 333 GGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM-FVGVGA-RRVRDLFAAA------------------ 392 (752)
T ss_pred cCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh-hhcccH-HHHHHHHHHH------------------
Confidence 34589999999999999999999999999999999999999653 787753 4456665553
Q ss_pred HHHHHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHh
Q psy2406 147 AAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMF 226 (464)
Q Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~ 226 (464)
T Consensus 393 -------------------------------------------------------------------------------- 392 (752)
T KOG0734|consen 393 -------------------------------------------------------------------------------- 392 (752)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhh
Q psy2406 227 SVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLL 306 (464)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LL 306 (464)
.++| ||||||||||.++.+|..... . -.....+.||
T Consensus 393 ----------------------------------------k~~A--PcIIFIDEiDavG~kR~~~~~-~-y~kqTlNQLL 428 (752)
T KOG0734|consen 393 ----------------------------------------KARA--PCIIFIDEIDAVGGKRNPSDQ-H-YAKQTLNQLL 428 (752)
T ss_pred ----------------------------------------HhcC--CeEEEEechhhhcccCCccHH-H-HHHHHHHHHH
Confidence 2444 999999999999988765211 1 2334667888
Q ss_pred ccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhh--ccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHh
Q psy2406 307 PLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLA 384 (464)
Q Consensus 307 qlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl--~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~ 384 (464)
--|||..- +..|++|++++ .|.+++|+|. +|||..|.++.++-.-+.+|++.. ++
T Consensus 429 vEmDGF~q--------NeGiIvigATN----fpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~y-------l~---- 485 (752)
T KOG0734|consen 429 VEMDGFKQ--------NEGIIVIGATN----FPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLY-------LS---- 485 (752)
T ss_pred HHhcCcCc--------CCceEEEeccC----ChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHH-------Hh----
Confidence 88998543 45789999985 5888999987 999999999999999999998521 11
Q ss_pred hcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHhCCC
Q psy2406 385 TEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGDL 453 (464)
Q Consensus 385 ~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~~~~ 453 (464)
++ .+++++=-.|..++... -.|| .|.+++.+..... ..++...||-.+++.+..++
T Consensus 486 --ki--~~~~~VD~~iiARGT~G-----FsGA-dLaNlVNqAAlkA---a~dga~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 486 --KI--PLDEDVDPKIIARGTPG-----FSGA-DLANLVNQAALKA---AVDGAEMVTMKHLEFAKDRI 541 (752)
T ss_pred --cC--CcccCCCHhHhccCCCC-----CchH-HHHHHHHHHHHHH---HhcCcccccHHHHhhhhhhe
Confidence 22 22333322333344332 4566 5778777654333 33334567777777665443
No 33
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.84 E-value=3.6e-20 Score=198.04 Aligned_cols=204 Identities=17% Similarity=0.249 Sum_probs=141.2
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 149 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~ 149 (464)
.|+++||+||||||||++||++|++++.||+.++++.+. .+|+|+. +.-++.+++.|
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~-~~~vGes-e~~l~~~f~~A--------------------- 314 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLF-GGIVGES-ESRMRQMIRIA--------------------- 314 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhc-ccccChH-HHHHHHHHHHH---------------------
Confidence 678999999999999999999999999999999998875 4688874 33344443331
Q ss_pred HHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhc
Q psy2406 150 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 229 (464)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 229 (464)
T Consensus 315 -------------------------------------------------------------------------------- 314 (489)
T CHL00195 315 -------------------------------------------------------------------------------- 314 (489)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccc
Q psy2406 230 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV 309 (464)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlL 309 (464)
+. ..||||||||||++...+.+.+... ....+...||..|
T Consensus 315 --------------------------------------~~-~~P~IL~IDEID~~~~~~~~~~d~~-~~~rvl~~lL~~l 354 (489)
T CHL00195 315 --------------------------------------EA-LSPCILWIDEIDKAFSNSESKGDSG-TTNRVLATFITWL 354 (489)
T ss_pred --------------------------------------Hh-cCCcEEEehhhhhhhccccCCCCch-HHHHHHHHHHHHH
Confidence 11 2589999999999986543311111 2223556777777
Q ss_pred cCceeeeeeeeecCceeEeeccCCccccCCCCCchhhh--ccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcC
Q psy2406 310 EGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEG 387 (464)
Q Consensus 310 EG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl--~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~g 387 (464)
++. .+++++|+|+ ++++.++|+++ +|||.++.++.++.+++.+|++. .+++ .+
T Consensus 355 ~~~----------~~~V~vIaTT----N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~----~l~~-------~~ 409 (489)
T CHL00195 355 SEK----------KSPVFVVATA----NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKI----HLQK-------FR 409 (489)
T ss_pred hcC----------CCceEEEEec----CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHH----HHhh-------cC
Confidence 642 3567888886 57889999998 59999999999999999999952 2221 11
Q ss_pred ceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHhCCC
Q psy2406 388 IKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGDL 453 (464)
Q Consensus 388 i~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~~~~ 453 (464)
. ...++..++.||+.+. ++.++.|.+++.........+ .-.+|.+++..++...
T Consensus 410 ~-~~~~~~dl~~La~~T~-------GfSGAdI~~lv~eA~~~A~~~----~~~lt~~dl~~a~~~~ 463 (489)
T CHL00195 410 P-KSWKKYDIKKLSKLSN-------KFSGAEIEQSIIEAMYIAFYE----KREFTTDDILLALKQF 463 (489)
T ss_pred C-CcccccCHHHHHhhcC-------CCCHHHHHHHHHHHHHHHHHc----CCCcCHHHHHHHHHhc
Confidence 1 1123445788888875 455667887776654433221 2346777777665443
No 34
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=8e-20 Score=195.30 Aligned_cols=206 Identities=24% Similarity=0.274 Sum_probs=151.4
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 149 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~ 149 (464)
.|+++||+||||||||+||+++|.+++.+|+.+++++++ +.|+|+. +..++.+|..|
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~-sk~vGes-ek~ir~~F~~A--------------------- 331 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL-SKWVGES-EKNIRELFEKA--------------------- 331 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHh-ccccchH-HHHHHHHHHHH---------------------
Confidence 557999999999999999999999999999999999886 5688875 55566666553
Q ss_pred HHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhc
Q psy2406 150 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 229 (464)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 229 (464)
T Consensus 332 -------------------------------------------------------------------------------- 331 (494)
T COG0464 332 -------------------------------------------------------------------------------- 331 (494)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccc
Q psy2406 230 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV 309 (464)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlL 309 (464)
+...||||||||||++.+.++. +.+.+...+.+.||..|
T Consensus 332 ---------------------------------------~~~~p~iiFiDEiDs~~~~r~~--~~~~~~~r~~~~lL~~~ 370 (494)
T COG0464 332 ---------------------------------------RKLAPSIIFIDEIDSLASGRGP--SEDGSGRRVVGQLLTEL 370 (494)
T ss_pred ---------------------------------------HcCCCcEEEEEchhhhhccCCC--CCchHHHHHHHHHHHHh
Confidence 1126899999999999988764 12222345778899999
Q ss_pred cCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc--cCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcC
Q psy2406 310 EGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEG 387 (464)
Q Consensus 310 EG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~--R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~g 387 (464)
+|- -..+++++|+|+ +.|+.++|++++ |||.++.|++++.++..+|++. .+...+
T Consensus 371 d~~--------e~~~~v~vi~aT----N~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~-----------~~~~~~ 427 (494)
T COG0464 371 DGI--------EKAEGVLVIAAT----NRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKI-----------HLRDKK 427 (494)
T ss_pred cCC--------CccCceEEEecC----CCccccCHhhcccCccceEeecCCCCHHHHHHHHHH-----------HhcccC
Confidence 863 245678888887 589999999998 9999999999999999999952 122112
Q ss_pred ceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHhCC
Q psy2406 388 IKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 388 i~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~~~ 452 (464)
.. -.++-.++.|++.... -.|| .+..+++........+.. ...|+.+++..++..
T Consensus 428 ~~-~~~~~~~~~l~~~t~~------~sga-di~~i~~ea~~~~~~~~~--~~~~~~~~~~~a~~~ 482 (494)
T COG0464 428 PP-LAEDVDLEELAEITEG------YSGA-DIAALVREAALEALREAR--RREVTLDDFLDALKK 482 (494)
T ss_pred Cc-chhhhhHHHHHHHhcC------CCHH-HHHHHHHHHHHHHHHHhc--cCCccHHHHHHHHHh
Confidence 21 2234557777775543 2444 577777766555443332 236788888777665
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.83 E-value=5.3e-20 Score=205.68 Aligned_cols=217 Identities=22% Similarity=0.272 Sum_probs=152.7
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 149 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~ 149 (464)
.|+++||+||||||||++|+++|++++++|+.++++++. ..|+|+. +..++.+|+.|
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~-~~~vGes-e~~i~~~f~~A--------------------- 542 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIL-SKWVGES-EKAIREIFRKA--------------------- 542 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHh-hcccCcH-HHHHHHHHHHH---------------------
Confidence 568899999999999999999999999999999999885 4688876 44556665553
Q ss_pred HHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhc
Q psy2406 150 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 229 (464)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 229 (464)
T Consensus 543 -------------------------------------------------------------------------------- 542 (733)
T TIGR01243 543 -------------------------------------------------------------------------------- 542 (733)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccc
Q psy2406 230 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV 309 (464)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlL 309 (464)
+. ..||||||||||++++.++...... ..+.+.+.||..|
T Consensus 543 --------------------------------------~~-~~p~iifiDEid~l~~~r~~~~~~~-~~~~~~~~lL~~l 582 (733)
T TIGR01243 543 --------------------------------------RQ-AAPAIIFFDEIDAIAPARGARFDTS-VTDRIVNQLLTEM 582 (733)
T ss_pred --------------------------------------Hh-cCCEEEEEEChhhhhccCCCCCCcc-HHHHHHHHHHHHh
Confidence 11 2689999999999998776422222 2345677899999
Q ss_pred cCceeeeeeeeecCceeEeeccCCccccCCCCCchhhh--ccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcC
Q psy2406 310 EGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEG 387 (464)
Q Consensus 310 EG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl--~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~g 387 (464)
||- ...+++++|+|+ ++|+.++|+++ +|||.+|.|++++.+++.+|++. . .++
T Consensus 583 dg~--------~~~~~v~vI~aT----n~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~----~---------~~~ 637 (733)
T TIGR01243 583 DGI--------QELSNVVVIAAT----NRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKI----H---------TRS 637 (733)
T ss_pred hcc--------cCCCCEEEEEeC----CChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHH----H---------hcC
Confidence 873 235678999987 57889999998 59999999999999999999841 1 122
Q ss_pred ceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccC---------C------CceeecHHHHHhHhC-
Q psy2406 388 IKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSN---------N------ISLLVDADYVNSRLG- 451 (464)
Q Consensus 388 i~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~---------~------~~v~I~~e~v~~~~~- 451 (464)
..+. ++..++.||+.+. ++.+..|..++.......+.+.. . ....|+.+++..++.
T Consensus 638 ~~~~-~~~~l~~la~~t~-------g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~ 709 (733)
T TIGR01243 638 MPLA-EDVDLEELAEMTE-------GYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKK 709 (733)
T ss_pred CCCC-ccCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHH
Confidence 2222 2223778888774 34556677777655443332210 0 124688888877653
Q ss_pred --CCCCCCCCCCc
Q psy2406 452 --DLSINEDLSRY 462 (464)
Q Consensus 452 --~~~~~~d~~~~ 462 (464)
+.+...|+.+|
T Consensus 710 ~~ps~~~~~~~~~ 722 (733)
T TIGR01243 710 VKPSVSKEDMLRY 722 (733)
T ss_pred cCCCCCHHHHHHH
Confidence 44444454444
No 36
>CHL00181 cbbX CbbX; Provisional
Probab=99.83 E-value=6.6e-20 Score=184.08 Aligned_cols=147 Identities=15% Similarity=0.215 Sum_probs=98.3
Q ss_pred hhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccc-cCCCCCchhh
Q psy2406 268 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL-AKPSDLIPEL 346 (464)
Q Consensus 268 ~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~-~~p~~f~PEf 346 (464)
+.+ .++||||||+|.+.+.... .+ .+..+++.|+++|+.. ..++++|++|+-.. ..-..++|+|
T Consensus 119 ~~a-~ggVLfIDE~~~l~~~~~~---~~-~~~e~~~~L~~~me~~----------~~~~~vI~ag~~~~~~~~~~~np~L 183 (287)
T CHL00181 119 KKA-MGGVLFIDEAYYLYKPDNE---RD-YGSEAIEILLQVMENQ----------RDDLVVIFAGYKDRMDKFYESNPGL 183 (287)
T ss_pred HHc-cCCEEEEEccchhccCCCc---cc-hHHHHHHHHHHHHhcC----------CCCEEEEEeCCcHHHHHHHhcCHHH
Confidence 344 5789999999998654221 22 2345778999999853 35678888874211 1112456999
Q ss_pred hccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHH----hhccccCCCccC-hhHHHH
Q psy2406 347 QGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEI----AYCINERTENIG-ARRLYT 421 (464)
Q Consensus 347 l~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~----a~~~~~~~~~~G-AR~L~r 421 (464)
.+||+.+|.|++++.+++.+|+. .++++ .+ ..+++++...++.. +..+ .+| ||.+++
T Consensus 184 ~sR~~~~i~F~~~t~~el~~I~~----~~l~~-------~~--~~l~~~~~~~L~~~i~~~~~~~-----~~GNaR~vrn 245 (287)
T CHL00181 184 SSRIANHVDFPDYTPEELLQIAK----IMLEE-------QQ--YQLTPEAEKALLDYIKKRMEQP-----LFANARSVRN 245 (287)
T ss_pred HHhCCceEEcCCcCHHHHHHHHH----HHHHH-------hc--CCCChhHHHHHHHHHHHhCCCC-----CCccHHHHHH
Confidence 99999999999999999999984 23222 23 35667766555544 3333 567 999999
Q ss_pred HHHHHHHHHhcccCCCc---------eeecHHHHH
Q psy2406 422 AMEKLLEEVSFNSNNIS---------LLVDADYVN 447 (464)
Q Consensus 422 ~IE~~l~~~l~~~~~~~---------v~I~~e~v~ 447 (464)
++++.+......+.... ..|+++++.
T Consensus 246 ~ve~~~~~~~~r~~~~~~~~~~~~~l~~~~~~d~~ 280 (287)
T CHL00181 246 ALDRARMRQANRIFESGGRVLTKADLVTIEAEDIL 280 (287)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHhCCCHHHHh
Confidence 99998887765543221 456666654
No 37
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.81 E-value=3.2e-19 Score=175.98 Aligned_cols=139 Identities=17% Similarity=0.288 Sum_probs=95.4
Q ss_pred hhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccC-CCCCchhh
Q psy2406 268 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAK-PSDLIPEL 346 (464)
Q Consensus 268 ~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~-p~~f~PEf 346 (464)
.++ .++||||||||.+.+... .......++.|++.|+.. +.++++|++++....+ ...++|+|
T Consensus 102 ~~a-~~~VL~IDE~~~L~~~~~-----~~~~~~~i~~Ll~~~e~~----------~~~~~vila~~~~~~~~~~~~~p~L 165 (261)
T TIGR02881 102 KKA-LGGVLFIDEAYSLARGGE-----KDFGKEAIDTLVKGMEDN----------RNEFVLILAGYSDEMDYFLSLNPGL 165 (261)
T ss_pred Hhc-cCCEEEEechhhhccCCc-----cchHHHHHHHHHHHHhcc----------CCCEEEEecCCcchhHHHHhcChHH
Confidence 444 578999999999974211 112334677899999863 3455667766422111 12478999
Q ss_pred hccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhcc--ccCCCccChhHHHHHHH
Q psy2406 347 QGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI--NERTENIGARRLYTAME 424 (464)
Q Consensus 347 l~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~--~~~~~~~GAR~L~r~IE 424 (464)
.+||+..|.|++++.+++.+|++. .+... .+.++++++.+|++..... ......+.||.++++++
T Consensus 166 ~sRf~~~i~f~~~~~~el~~Il~~-----------~~~~~--~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e 232 (261)
T TIGR02881 166 RSRFPISIDFPDYTVEELMEIAER-----------MVKER--EYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIE 232 (261)
T ss_pred HhccceEEEECCCCHHHHHHHHHH-----------HHHHc--CCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 999999999999999999999841 22223 3478999999997653210 01123578999999999
Q ss_pred HHHHHHhcccC
Q psy2406 425 KLLEEVSFNSN 435 (464)
Q Consensus 425 ~~l~~~l~~~~ 435 (464)
+.+...+..+.
T Consensus 233 ~a~~~~~~r~~ 243 (261)
T TIGR02881 233 KAIRRQAVRLL 243 (261)
T ss_pred HHHHHHHHHHh
Confidence 98888776654
No 38
>KOG0736|consensus
Probab=99.81 E-value=2.2e-19 Score=195.04 Aligned_cols=207 Identities=19% Similarity=0.290 Sum_probs=140.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDR 151 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~ 151 (464)
.|||||||||||||.+||++|.++...|+.+-++++. ..|+|++.++ +|+.|+.|
T Consensus 706 SGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL-NMYVGqSE~N-VR~VFerA----------------------- 760 (953)
T KOG0736|consen 706 SGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL-NMYVGQSEEN-VREVFERA----------------------- 760 (953)
T ss_pred ceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH-HHHhcchHHH-HHHHHHHh-----------------------
Confidence 7899999999999999999999999999999999986 5699987544 45454442
Q ss_pred HHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhcCC
Q psy2406 152 VIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGN 231 (464)
Q Consensus 152 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~ 231 (464)
T Consensus 761 -------------------------------------------------------------------------------- 760 (953)
T KOG0736|consen 761 -------------------------------------------------------------------------------- 760 (953)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCC-CCCcchhhHHHhhhcccc
Q psy2406 232 HRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVE 310 (464)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~-~~d~~~~gvq~~LLqlLE 310 (464)
|.| .||||||||+|+++|.|+.++ ...|-++ +...||.-||
T Consensus 761 ------------------------------------R~A-~PCVIFFDELDSlAP~RG~sGDSGGVMDR-VVSQLLAELD 802 (953)
T KOG0736|consen 761 ------------------------------------RSA-APCVIFFDELDSLAPNRGRSGDSGGVMDR-VVSQLLAELD 802 (953)
T ss_pred ------------------------------------hcc-CCeEEEeccccccCccCCCCCCccccHHH-HHHHHHHHhh
Confidence 223 699999999999999998754 4455555 4447888899
Q ss_pred CceeeeeeeeecCceeEeeccCCccccCCCCCchhhh--ccCCeEEEcCCCCHHHHH-HHHHhhHHHHHHHHHHHHhhcC
Q psy2406 311 GTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVELDSLSISDFT-RIMTSTNVCLTKQYEALLATEG 387 (464)
Q Consensus 311 G~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl--~R~d~iV~f~~Lt~~el~-~Il~~~~~~ll~~~~~ll~~~g 387 (464)
|-.- -++..+-+|+|| ++|.-++|+|+ ||||-.+.+.+-..++-+ +|| .++.+ +
T Consensus 803 gls~------~~s~~VFViGAT----NRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL----~AlTr---k------ 859 (953)
T KOG0736|consen 803 GLSD------SSSQDVFVIGAT----NRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVL----EALTR---K------ 859 (953)
T ss_pred cccC------CCCCceEEEecC----CCccccChhhcCCCccceeEEecCCccHHHHHHHH----HHHHH---H------
Confidence 7321 134455667776 68988999998 999999999888765533 333 22222 2
Q ss_pred ceeEeCHHH-HHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcc------------cC--CCceeecHHHHHhHhCC
Q psy2406 388 IKIEFVDDG-IQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN------------SN--NISLLVDADYVNSRLGD 452 (464)
Q Consensus 388 i~L~~sdeA-l~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~------------~~--~~~v~I~~e~v~~~~~~ 452 (464)
+.+++++ +..||+.+-.. -.||- |-.++-......+.. .. ...+.|+.+++-+...+
T Consensus 860 --FkLdedVdL~eiAk~cp~~-----~TGAD-lYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~ 931 (953)
T KOG0736|consen 860 --FKLDEDVDLVEIAKKCPPN-----MTGAD-LYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKR 931 (953)
T ss_pred --ccCCCCcCHHHHHhhCCcC-----CchhH-HHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHh
Confidence 2333333 66888887542 45653 554444333322211 11 11288999988665443
No 39
>KOG0727|consensus
Probab=99.81 E-value=1.1e-19 Score=177.42 Aligned_cols=207 Identities=20% Similarity=0.300 Sum_probs=144.0
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 149 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~ 149 (464)
.|+++|+|||||||||+||+++|+...+.||++.+|+|++ .|.|+.+ .|++++|+.|
T Consensus 188 pprgvllygppg~gktml~kava~~t~a~firvvgsefvq-kylgegp-rmvrdvfrla--------------------- 244 (408)
T KOG0727|consen 188 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ-KYLGEGP-RMVRDVFRLA--------------------- 244 (408)
T ss_pred CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH-HHhccCc-HHHHHHHHHH---------------------
Confidence 6789999999999999999999999999999999999985 5888864 6788887764
Q ss_pred HHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhc
Q psy2406 150 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 229 (464)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 229 (464)
T Consensus 245 -------------------------------------------------------------------------------- 244 (408)
T KOG0727|consen 245 -------------------------------------------------------------------------------- 244 (408)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhcc-
Q psy2406 230 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPL- 308 (464)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLql- 308 (464)
.+. .|+||||||||.++.++.... ...++.||..|+.+
T Consensus 245 -------------------------------------ken--apsiifideidaiatkrfdaq--tgadrevqril~ell 283 (408)
T KOG0727|consen 245 -------------------------------------KEN--APSIIFIDEIDAIATKRFDAQ--TGADREVQRILIELL 283 (408)
T ss_pred -------------------------------------hcc--CCcEEEeehhhhHhhhhcccc--ccccHHHHHHHHHHH
Confidence 122 489999999999998887532 22345577776665
Q ss_pred --ccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhh--ccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHh
Q psy2406 309 --VEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLA 384 (464)
Q Consensus 309 --LEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl--~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~ 384 (464)
|||. -.+.|+-+|+++ ++...++|+++ +|+|..|+|+.++..+.+-++. ...
T Consensus 284 nqmdgf--------dq~~nvkvimat----nradtldpallrpgrldrkiefplpdrrqkrlvf~--------tit---- 339 (408)
T KOG0727|consen 284 NQMDGF--------DQTTNVKVIMAT----NRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFS--------TIT---- 339 (408)
T ss_pred HhccCc--------CcccceEEEEec----CcccccCHhhcCCccccccccCCCCchhhhhhhHH--------hhh----
Confidence 4564 346788899987 46778999988 8999999999888877655542 111
Q ss_pred hcCceeEeCHHH-HHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHhCCCCCCC
Q psy2406 385 TEGIKIEFVDDG-IQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGDLSINE 457 (464)
Q Consensus 385 ~~gi~L~~sdeA-l~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~~~~~~~~ 457 (464)
.+..+++++ ++.++.+-. ...+-.+..+++..= |...-.+...|.+.++++.+...+++.
T Consensus 340 ---skm~ls~~vdle~~v~rpd-------kis~adi~aicqeag---m~avr~nryvvl~kd~e~ay~~~vk~~ 400 (408)
T KOG0727|consen 340 ---SKMNLSDEVDLEDLVARPD-------KISGADINAICQEAG---MLAVRENRYVVLQKDFEKAYKTVVKKD 400 (408)
T ss_pred ---hcccCCcccCHHHHhcCcc-------ccchhhHHHHHHHHh---HHHHHhcceeeeHHHHHHHHHhhcCCc
Confidence 122333333 333332222 333345677766431 222222345678888888877776654
No 40
>KOG0739|consensus
Probab=99.80 E-value=2e-19 Score=178.79 Aligned_cols=192 Identities=18% Similarity=0.294 Sum_probs=145.0
Q ss_pred hhHHHHhhhhhcccccccCCCCCCccccccCCC-cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccCh
Q psy2406 39 KAILKASVYIDAPNTRANNISRNNPVIRENNVI-LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDV 117 (464)
Q Consensus 39 q~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~p-~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~ 117 (464)
|..++++|.-.+++...... ...| ++||||||||||||.||+++|.+.+..|+.++.|.++ +.|.|++
T Consensus 142 KeALKEAVILPIKFPqlFtG---------kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLv-SKWmGES- 210 (439)
T KOG0739|consen 142 KEALKEAVILPIKFPQLFTG---------KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV-SKWMGES- 210 (439)
T ss_pred HHHHHhheeecccchhhhcC---------CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHH-HHHhccH-
Confidence 56666777775555544332 2234 7899999999999999999999999999999999997 5688875
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEE
Q psy2406 118 DTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIE 197 (464)
Q Consensus 118 ~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (464)
|.+++.||+.| |
T Consensus 211 EkLVknLFemA----R---------------------------------------------------------------- 222 (439)
T KOG0739|consen 211 EKLVKNLFEMA----R---------------------------------------------------------------- 222 (439)
T ss_pred HHHHHHHHHHH----H----------------------------------------------------------------
Confidence 77777777764 0
Q ss_pred EEecCCCCcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEE
Q psy2406 198 IELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIF 277 (464)
Q Consensus 198 ~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIf 277 (464)
+ ..|+|||
T Consensus 223 ----------------------------------------------------------------------e--~kPSIIF 230 (439)
T KOG0739|consen 223 ----------------------------------------------------------------------E--NKPSIIF 230 (439)
T ss_pred ----------------------------------------------------------------------h--cCCcEEE
Confidence 1 2589999
Q ss_pred EeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCCeEEEcC
Q psy2406 278 LDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELD 357 (464)
Q Consensus 278 IDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d~iV~f~ 357 (464)
|||||.+|..+.. +.++ ..+.+...||--|.|- ..+++.+++++++ +-||.++.+.++||+.+|.++
T Consensus 231 iDEiDslcg~r~e-nEse-asRRIKTEfLVQMqGV-------G~d~~gvLVLgAT----NiPw~LDsAIRRRFekRIYIP 297 (439)
T KOG0739|consen 231 IDEIDSLCGSRSE-NESE-ASRRIKTEFLVQMQGV-------GNDNDGVLVLGAT----NIPWVLDSAIRRRFEKRIYIP 297 (439)
T ss_pred eehhhhhccCCCC-CchH-HHHHHHHHHHHhhhcc-------ccCCCceEEEecC----CCchhHHHHHHHHhhcceecc
Confidence 9999999988775 2223 3345777888778773 3367788888887 579999999999999999888
Q ss_pred CCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhcc
Q psy2406 358 SLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 407 (464)
Q Consensus 358 ~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~ 407 (464)
.+....+..+++. ..-.....+|+.-.+.|++.....
T Consensus 298 LPe~~AR~~MF~l-------------hlG~tp~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 298 LPEAHARARMFKL-------------HLGDTPHVLTEQDFKELARKTEGY 334 (439)
T ss_pred CCcHHHhhhhhee-------------ccCCCccccchhhHHHHHhhcCCC
Confidence 7777666665531 123456688899999999887543
No 41
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.80 E-value=1e-18 Score=182.89 Aligned_cols=151 Identities=16% Similarity=0.204 Sum_probs=99.2
Q ss_pred CCcEEEEeccccccCcCCCCC-CCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc--
Q psy2406 272 QNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG-- 348 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~-~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~-- 348 (464)
.|+||||||||.+...+.+.. +.+..-..+...||..|||. -...++.+|+++ ++|+.++|++++
T Consensus 238 ~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~--------~~~~~v~VI~aT----N~~d~LDpAllR~G 305 (398)
T PTZ00454 238 APSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF--------DQTTNVKVIMAT----NRADTLDPALLRPG 305 (398)
T ss_pred CCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc--------CCCCCEEEEEec----CCchhCCHHHcCCC
Confidence 589999999999987764321 12211112333455556652 124567888887 478899999985
Q ss_pred cCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHH
Q psy2406 349 RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 428 (464)
Q Consensus 349 R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~ 428 (464)
|||..|.|++++.+++..|++. . +...++.-.+ -+..||+... ++.++.|+.++.....
T Consensus 306 Rfd~~I~~~~P~~~~R~~Il~~----~-------~~~~~l~~dv---d~~~la~~t~-------g~sgaDI~~l~~eA~~ 364 (398)
T PTZ00454 306 RLDRKIEFPLPDRRQKRLIFQT----I-------TSKMNLSEEV---DLEDFVSRPE-------KISAADIAAICQEAGM 364 (398)
T ss_pred cccEEEEeCCcCHHHHHHHHHH----H-------HhcCCCCccc---CHHHHHHHcC-------CCCHHHHHHHHHHHHH
Confidence 9999999999999999999842 2 1222332222 2567776654 4566778888876654
Q ss_pred HHhcccCCCceeecHHHHHhHhCCCCCCCC
Q psy2406 429 EVSFNSNNISLLVDADYVNSRLGDLSINED 458 (464)
Q Consensus 429 ~~l~~~~~~~v~I~~e~v~~~~~~~~~~~d 458 (464)
..+.+ ....|+.+++.+++...+.+.+
T Consensus 365 ~A~r~---~~~~i~~~df~~A~~~v~~~~~ 391 (398)
T PTZ00454 365 QAVRK---NRYVILPKDFEKGYKTVVRKTD 391 (398)
T ss_pred HHHHc---CCCccCHHHHHHHHHHHHhccc
Confidence 43322 2347999999999888776543
No 42
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.80 E-value=1.6e-18 Score=173.78 Aligned_cols=136 Identities=15% Similarity=0.186 Sum_probs=92.8
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccc-cCCCCCchhhhccC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL-AKPSDLIPELQGRF 350 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~-~~p~~f~PEfl~R~ 350 (464)
.++||||||||.+++.+.. +.....+++.|+++|+.. ..++++|++|+... ..-..++|+|.+||
T Consensus 121 ~~gvL~iDEi~~L~~~~~~----~~~~~~~~~~Ll~~le~~----------~~~~~vI~a~~~~~~~~~~~~np~L~sR~ 186 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENQ----------RDDLVVILAGYKDRMDSFFESNPGFSSRV 186 (284)
T ss_pred cCcEEEEechhhhccCCCc----cchHHHHHHHHHHHHhcC----------CCCEEEEEeCCcHHHHHHHhhCHHHHhhC
Confidence 5689999999999754321 223345778999999853 24667888874211 11123589999999
Q ss_pred CeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCc-cChhHHHHHHHHHHHH
Q psy2406 351 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTEN-IGARRLYTAMEKLLEE 429 (464)
Q Consensus 351 d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~-~GAR~L~r~IE~~l~~ 429 (464)
+..|.|++|+.+++..|+. ..+++ .+ ..++++++..+++..-.. ...+. +.||.|++++++.+..
T Consensus 187 ~~~i~fp~l~~edl~~I~~----~~l~~-------~~--~~l~~~a~~~L~~~l~~~-~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 187 AHHVDFPDYSEAELLVIAG----LMLKE-------QQ--YRFSAEAEEAFADYIALR-RTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred CcEEEeCCcCHHHHHHHHH----HHHHH-------hc--cccCHHHHHHHHHHHHHh-CCCCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999984 23322 22 467889988887652100 00113 4499999999998887
Q ss_pred HhcccC
Q psy2406 430 VSFNSN 435 (464)
Q Consensus 430 ~l~~~~ 435 (464)
....+.
T Consensus 253 ~~~r~~ 258 (284)
T TIGR02880 253 QANRLF 258 (284)
T ss_pred HHHHHh
Confidence 765543
No 43
>KOG2028|consensus
Probab=99.80 E-value=1e-18 Score=177.44 Aligned_cols=146 Identities=25% Similarity=0.325 Sum_probs=107.4
Q ss_pred CcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCC-CCchhhhccCC
Q psy2406 273 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS-DLIPELQGRFP 351 (464)
Q Consensus 273 ~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~-~f~PEfl~R~d 351 (464)
..|+||||||++++. +|+.||+.+|.+.+ ++|++++ +||+ .+..+|++|+.
T Consensus 223 kTilFiDEiHRFNks-------------QQD~fLP~VE~G~I------------~lIGATT---ENPSFqln~aLlSRC~ 274 (554)
T KOG2028|consen 223 KTILFIDEIHRFNKS-------------QQDTFLPHVENGDI------------TLIGATT---ENPSFQLNAALLSRCR 274 (554)
T ss_pred eeEEEeHHhhhhhhh-------------hhhcccceeccCce------------EEEeccc---CCCccchhHHHHhccc
Confidence 579999999999876 67799999997644 7788874 7775 68899999997
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHH-hhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALL-ATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 430 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll-~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~ 430 (464)
+ +++++|+.+++..||.+.-..+.+- .+.- ...+-...+++.++++|+..+ .++||...+.+|-.+.
T Consensus 275 V-fvLekL~~n~v~~iL~raia~l~ds-er~~~~l~n~s~~ve~siidyla~ls--------dGDaR~aLN~Lems~~-- 342 (554)
T KOG2028|consen 275 V-FVLEKLPVNAVVTILMRAIASLGDS-ERPTDPLPNSSMFVEDSIIDYLAYLS--------DGDARAALNALEMSLS-- 342 (554)
T ss_pred e-eEeccCCHHHHHHHHHHHHHhhccc-cccCCCCCCcchhhhHHHHHHHHHhc--------CchHHHHHHHHHHHHH--
Confidence 6 6899999999999997543333221 1100 112223468999999999887 5899999999987644
Q ss_pred hcccCC---CceeecHHHHHhHhCCCCCCCC
Q psy2406 431 SFNSNN---ISLLVDADYVNSRLGDLSINED 458 (464)
Q Consensus 431 l~~~~~---~~v~I~~e~v~~~~~~~~~~~d 458 (464)
++-.-. ..+.++.++|++.+++.-.-+|
T Consensus 343 m~~tr~g~~~~~~lSidDvke~lq~s~~~YD 373 (554)
T KOG2028|consen 343 MFCTRSGQSSRVLLSIDDVKEGLQRSHILYD 373 (554)
T ss_pred HHHhhcCCcccceecHHHHHHHHhhccceec
Confidence 222222 2378999999999887665555
No 44
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.79 E-value=1e-18 Score=203.93 Aligned_cols=148 Identities=20% Similarity=0.178 Sum_probs=98.2
Q ss_pred HHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCc
Q psy2406 264 QKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLI 343 (464)
Q Consensus 264 ~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~ 343 (464)
+.|.+. .||||||||||.++.... +......||..|+|... .-.+.+|++|||| ++|+.++
T Consensus 1726 elARk~--SPCIIFIDEIDaL~~~ds--------~~ltL~qLLneLDg~~~-----~~s~~~VIVIAAT----NRPD~LD 1786 (2281)
T CHL00206 1726 ELAKAM--SPCIIWIPNIHDLNVNES--------NYLSLGLLVNSLSRDCE-----RCSTRNILVIAST----HIPQKVD 1786 (2281)
T ss_pred HHHHHC--CCeEEEEEchhhcCCCcc--------ceehHHHHHHHhccccc-----cCCCCCEEEEEeC----CCcccCC
Confidence 445444 499999999999986521 11234578888887421 1246789999997 5899999
Q ss_pred hhhh--ccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHH
Q psy2406 344 PELQ--GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYT 421 (464)
Q Consensus 344 PEfl--~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r 421 (464)
|+|+ ||||..|.++.|+..+..+++. .+ +..+|+.+.-+..-++.||+... ++-++.|..
T Consensus 1787 PALLRPGRFDR~I~Ir~Pd~p~R~kiL~----IL-------l~tkg~~L~~~~vdl~~LA~~T~-------GfSGADLan 1848 (2281)
T CHL00206 1787 PALIAPNKLNTCIKIRRLLIPQQRKHFF----TL-------SYTRGFHLEKKMFHTNGFGSITM-------GSNARDLVA 1848 (2281)
T ss_pred HhHcCCCCCCeEEEeCCCCchhHHHHHH----HH-------HhhcCCCCCcccccHHHHHHhCC-------CCCHHHHHH
Confidence 9999 5999999999999988888773 11 12334444322223677887764 566778888
Q ss_pred HHHHHHHHHhcccCCCceeecHHHHHhHhC
Q psy2406 422 AMEKLLEEVSFNSNNISLLVDADYVNSRLG 451 (464)
Q Consensus 422 ~IE~~l~~~l~~~~~~~v~I~~e~v~~~~~ 451 (464)
++...+.-.+. .+.-.|+.++++.++-
T Consensus 1849 LvNEAaliAir---q~ks~Id~~~I~~Al~ 1875 (2281)
T CHL00206 1849 LTNEALSISIT---QKKSIIDTNTIRSALH 1875 (2281)
T ss_pred HHHHHHHHHHH---cCCCccCHHHHHHHHH
Confidence 88765543322 2223567666666544
No 45
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.79 E-value=1.8e-18 Score=185.35 Aligned_cols=147 Identities=18% Similarity=0.229 Sum_probs=100.0
Q ss_pred CCcEEEEeccccccCcCCCC-CCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc--
Q psy2406 272 QNGIIFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG-- 348 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~-~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~-- 348 (464)
.||||||||||.+++.+... ++.+.....+.+.||..|||. ....++++|+++ +.|..++|++++
T Consensus 147 ~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~--------~~~~~v~vI~aT----n~~~~ld~al~r~g 214 (495)
T TIGR01241 147 APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF--------GTNTGVIVIAAT----NRPDVLDPALLRPG 214 (495)
T ss_pred CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc--------cCCCCeEEEEec----CChhhcCHHHhcCC
Confidence 58999999999999876542 122333345677888888863 234567888887 578889999985
Q ss_pred cCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHH
Q psy2406 349 RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 428 (464)
Q Consensus 349 R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~ 428 (464)
|||..|.|+.++.+++.+|++. . +..... . ++..+..||+... .+-.+.|.+++.....
T Consensus 215 Rfd~~i~i~~Pd~~~R~~il~~----~-------l~~~~~--~-~~~~l~~la~~t~-------G~sgadl~~l~~eA~~ 273 (495)
T TIGR01241 215 RFDRQVVVDLPDIKGREEILKV----H-------AKNKKL--A-PDVDLKAVARRTP-------GFSGADLANLLNEAAL 273 (495)
T ss_pred cceEEEEcCCCCHHHHHHHHHH----H-------HhcCCC--C-cchhHHHHHHhCC-------CCCHHHHHHHHHHHHH
Confidence 9999999999999999999852 1 111122 1 2334668887764 3455678888876533
Q ss_pred HHhcccCCCceeecHHHHHhHhCCCC
Q psy2406 429 EVSFNSNNISLLVDADYVNSRLGDLS 454 (464)
Q Consensus 429 ~~l~~~~~~~v~I~~e~v~~~~~~~~ 454 (464)
... ....-.||.++++.++.+..
T Consensus 274 ~a~---~~~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 274 LAA---RKNKTEITMNDIEEAIDRVI 296 (495)
T ss_pred HHH---HcCCCCCCHHHHHHHHHHHh
Confidence 221 11224689999988877654
No 46
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.2e-18 Score=188.28 Aligned_cols=207 Identities=21% Similarity=0.287 Sum_probs=148.9
Q ss_pred CCCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 69 NVILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 148 (464)
Q Consensus 69 ~~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~ 148 (464)
..|+++||+||||||||+|||++|.+.++||+.+++|++.+ .|||.. .+-+|+||..|
T Consensus 181 kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe-mfVGvG-AsRVRdLF~qA-------------------- 238 (596)
T COG0465 181 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE-MFVGVG-ASRVRDLFEQA-------------------- 238 (596)
T ss_pred ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh-hhcCCC-cHHHHHHHHHh--------------------
Confidence 58999999999999999999999999999999999999986 477764 34455555542
Q ss_pred HHHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhh
Q psy2406 149 EDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSV 228 (464)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~ 228 (464)
T Consensus 239 -------------------------------------------------------------------------------- 238 (596)
T COG0465 239 -------------------------------------------------------------------------------- 238 (596)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCC-CCCCcchhhHHHhhhc
Q psy2406 229 IGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQN-NNTDISRAGVQRDLLP 307 (464)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~-~~~d~~~~gvq~~LLq 307 (464)
.+.+ ||||||||||+.++.++.. ++....++...+.||.
T Consensus 239 --------------------------------------kk~a--P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLv 278 (596)
T COG0465 239 --------------------------------------KKNA--PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLV 278 (596)
T ss_pred --------------------------------------hccC--CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHh
Confidence 2334 7999999999999988643 4566677889999999
Q ss_pred cccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhh--ccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhh
Q psy2406 308 LVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLAT 385 (464)
Q Consensus 308 lLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl--~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~ 385 (464)
-|||.. ..+.|++|++| ++|..++|+|+ +|||..|.++.++-..+.+|++- -.
T Consensus 279 EmDGF~--------~~~gviviaaT----NRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~Ilkv-------------H~ 333 (596)
T COG0465 279 EMDGFG--------GNEGVIVIAAT----NRPDVLDPALLRPGRFDRQILVELPDIKGREQILKV-------------HA 333 (596)
T ss_pred hhccCC--------CCCceEEEecC----CCcccchHhhcCCCCcceeeecCCcchhhHHHHHHH-------------Hh
Confidence 999853 23466777776 58888999998 89999999999999999999852 12
Q ss_pred cCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHhCCC
Q psy2406 386 EGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGDL 453 (464)
Q Consensus 386 ~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~~~~ 453 (464)
+++.+.-+-+ +..||+..-. ..||-...-+.|..+. ....+...||..+++.+..++
T Consensus 334 ~~~~l~~~Vd-l~~iAr~tpG------fsGAdL~nl~NEAal~----aar~n~~~i~~~~i~ea~drv 390 (596)
T COG0465 334 KNKPLAEDVD-LKKIARGTPG------FSGADLANLLNEAALL----AARRNKKEITMRDIEEAIDRV 390 (596)
T ss_pred hcCCCCCcCC-HHHHhhhCCC------cccchHhhhHHHHHHH----HHHhcCeeEeccchHHHHHHH
Confidence 3444441111 2236665533 4677644444444433 334344566666666554443
No 47
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.78 E-value=4.1e-18 Score=177.74 Aligned_cols=145 Identities=19% Similarity=0.205 Sum_probs=94.7
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccc---cCceeeeeeeeecCceeEeeccCCccccCCCCCchhhh-
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV---EGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ- 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlL---EG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl- 347 (464)
.++||||||||.+...+.+.. ......+++.|++++ +|. ....++.+|+|+ +.++.++|+++
T Consensus 224 ~p~IlfiDEiD~l~~~r~~~~--~~~~~~~~~~l~~lL~~ld~~--------~~~~~v~VI~aT----n~~~~ld~allR 289 (389)
T PRK03992 224 APSIIFIDEIDAIAAKRTDSG--TSGDREVQRTLMQLLAEMDGF--------DPRGNVKIIAAT----NRIDILDPAILR 289 (389)
T ss_pred CCeEEEEechhhhhcccccCC--CCccHHHHHHHHHHHHhcccc--------CCCCCEEEEEec----CChhhCCHHHcC
Confidence 589999999999987765421 111223455555554 431 134577888887 46778899998
Q ss_pred -ccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHH
Q psy2406 348 -GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 426 (464)
Q Consensus 348 -~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~ 426 (464)
+|||..|.|++|+.+++.+|++. . +....+.-. -.+..||+.+. ++.++.|+.++...
T Consensus 290 pgRfd~~I~v~~P~~~~R~~Il~~----~-------~~~~~~~~~---~~~~~la~~t~-------g~sgadl~~l~~eA 348 (389)
T PRK03992 290 PGRFDRIIEVPLPDEEGRLEILKI----H-------TRKMNLADD---VDLEELAELTE-------GASGADLKAICTEA 348 (389)
T ss_pred CccCceEEEECCCCHHHHHHHHHH----H-------hccCCCCCc---CCHHHHHHHcC-------CCCHHHHHHHHHHH
Confidence 59999999999999999999852 1 111122111 23667777764 45667888887765
Q ss_pred HHHHhcccCCCceeecHHHHHhHhCCCC
Q psy2406 427 LEEVSFNSNNISLLVDADYVNSRLGDLS 454 (464)
Q Consensus 427 l~~~l~~~~~~~v~I~~e~v~~~~~~~~ 454 (464)
....+.+ ..-.|+.+++.+++....
T Consensus 349 ~~~a~~~---~~~~i~~~d~~~A~~~~~ 373 (389)
T PRK03992 349 GMFAIRD---DRTEVTMEDFLKAIEKVM 373 (389)
T ss_pred HHHHHHc---CCCCcCHHHHHHHHHHHh
Confidence 4433222 224689999988876653
No 48
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.78 E-value=5.4e-18 Score=167.87 Aligned_cols=143 Identities=17% Similarity=0.266 Sum_probs=101.4
Q ss_pred cCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeee--------eecCceeEeeccCCccccCCCCC
Q psy2406 271 EQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG--------IIKTDHILFIASGAFHLAKPSDL 342 (464)
Q Consensus 271 ~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~--------~i~Tsnil~I~ag~f~~~~p~~f 342 (464)
++++|+||||||++++.. -..|++.||+..+|...| .++-....+|+|| .+...+
T Consensus 102 e~~DVLFIDEIHrl~~~v-------------EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGAT----Tr~G~l 164 (332)
T COG2255 102 EEGDVLFIDEIHRLSPAV-------------EEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGAT----TRAGML 164 (332)
T ss_pred CcCCeEEEehhhhcChhH-------------HHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeec----cccccc
Confidence 588999999999999764 449999999988886433 3444444567765 366678
Q ss_pred chhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHH
Q psy2406 343 IPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTA 422 (464)
Q Consensus 343 ~PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~ 422 (464)
..+|..||..+..++-++.+|+.+|+.+. .. -..+.+++++...||+++- +=-|-..|+
T Consensus 165 t~PLrdRFGi~~rlefY~~~eL~~Iv~r~--------a~-----~l~i~i~~~~a~eIA~rSR--------GTPRIAnRL 223 (332)
T COG2255 165 TNPLRDRFGIIQRLEFYTVEELEEIVKRS--------AK-----ILGIEIDEEAALEIARRSR--------GTPRIANRL 223 (332)
T ss_pred cchhHHhcCCeeeeecCCHHHHHHHHHHH--------HH-----HhCCCCChHHHHHHHHhcc--------CCcHHHHHH
Confidence 88999999999999999999999999632 11 2356889999999999983 334555555
Q ss_pred HHHHHHHHhcccCCCceeecHHHHHhHhCCCC
Q psy2406 423 MEKLLEEVSFNSNNISLLVDADYVNSRLGDLS 454 (464)
Q Consensus 423 IE~~l~~~l~~~~~~~v~I~~e~v~~~~~~~~ 454 (464)
+.++-.-. .....-.|+.+.+.+++..+.
T Consensus 224 LrRVRDfa---~V~~~~~I~~~ia~~aL~~L~ 252 (332)
T COG2255 224 LRRVRDFA---QVKGDGDIDRDIADKALKMLD 252 (332)
T ss_pred HHHHHHHH---HHhcCCcccHHHHHHHHHHhC
Confidence 54432211 111224677777777665554
No 49
>KOG0735|consensus
Probab=99.76 E-value=3.4e-18 Score=184.47 Aligned_cols=178 Identities=24% Similarity=0.349 Sum_probs=133.8
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 149 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~ 149 (464)
.+.|||||||||||||.||-++|..++..||.+-++++. ..|+|.+ |+-+|++|..|
T Consensus 700 ~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL-~KyIGaS-Eq~vR~lF~rA--------------------- 756 (952)
T KOG0735|consen 700 LRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELL-SKYIGAS-EQNVRDLFERA--------------------- 756 (952)
T ss_pred cccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHH-HHHhccc-HHHHHHHHHHh---------------------
Confidence 348999999999999999999999999999999999886 5688887 45567777664
Q ss_pred HHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhc
Q psy2406 150 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 229 (464)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 229 (464)
T Consensus 757 -------------------------------------------------------------------------------- 756 (952)
T KOG0735|consen 757 -------------------------------------------------------------------------------- 756 (952)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccc
Q psy2406 230 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV 309 (464)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlL 309 (464)
+.| .|||+||||+|+++|+|+- ....+.+ .|.+.||+-|
T Consensus 757 --------------------------------------~~a-~PCiLFFDEfdSiAPkRGh-DsTGVTD-RVVNQlLTel 795 (952)
T KOG0735|consen 757 --------------------------------------QSA-KPCILFFDEFDSIAPKRGH-DSTGVTD-RVVNQLLTEL 795 (952)
T ss_pred --------------------------------------hcc-CCeEEEeccccccCcccCC-CCCCchH-HHHHHHHHhh
Confidence 223 6999999999999999874 2233444 4778899999
Q ss_pred cCceeeeeeeeecCceeEeeccCCccccCCCCCchhhh--ccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcC
Q psy2406 310 EGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEG 387 (464)
Q Consensus 310 EG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl--~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~g 387 (464)
||-.. -..+.++++| .+|.-++|+|+ ||+|..|.-+.+++.++.+|++. +.. .+
T Consensus 796 DG~Eg--------l~GV~i~aaT----sRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~----ls~---s~----- 851 (952)
T KOG0735|consen 796 DGAEG--------LDGVYILAAT----SRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQV----LSN---SL----- 851 (952)
T ss_pred ccccc--------cceEEEEEec----CCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHH----Hhh---cc-----
Confidence 98432 3345666665 58888999998 89999999999999999999852 211 01
Q ss_pred ceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHH
Q psy2406 388 IKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 424 (464)
Q Consensus 388 i~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE 424 (464)
+.-++--++++|..... -.||- |..++.
T Consensus 852 --~~~~~vdl~~~a~~T~g------~tgAD-lq~ll~ 879 (952)
T KOG0735|consen 852 --LKDTDVDLECLAQKTDG------FTGAD-LQSLLY 879 (952)
T ss_pred --CCccccchHHHhhhcCC------Cchhh-HHHHHH
Confidence 11123447889888764 35664 665554
No 50
>KOG0737|consensus
Probab=99.76 E-value=4.2e-18 Score=173.44 Aligned_cols=205 Identities=20% Similarity=0.353 Sum_probs=139.9
Q ss_pred hHHHHhhhhhcccccccCCCCCCccccccCCCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHH
Q psy2406 40 AILKASVYIDAPNTRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDT 119 (464)
Q Consensus 40 ~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~ 119 (464)
+.+.+.|-. +..|..++. ....++ .|+||||+||||||||.+|+++|++.|++|+.++++.++..+| |++ +.
T Consensus 102 ~~L~e~Vil--Plr~pelF~-~g~Ll~---p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf-gE~-eK 173 (386)
T KOG0737|consen 102 DALQELVIL--PLRRPELFA-KGKLLR---PPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF-GEA-QK 173 (386)
T ss_pred HHHHHHHhh--cccchhhhc-cccccc---CCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH-HHH-HH
Confidence 444555555 445555543 212222 6799999999999999999999999999999999999998544 653 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEE
Q psy2406 120 IIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIE 199 (464)
Q Consensus 120 ~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (464)
++..+|..|
T Consensus 174 lv~AvFslA----------------------------------------------------------------------- 182 (386)
T KOG0737|consen 174 LVKAVFSLA----------------------------------------------------------------------- 182 (386)
T ss_pred HHHHHHhhh-----------------------------------------------------------------------
Confidence 444444332
Q ss_pred ecCCCCcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEe
Q psy2406 200 LNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLD 279 (464)
Q Consensus 200 ~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfID 279 (464)
++| .|+|||||
T Consensus 183 ------------------------------------------------------sKl---------------~P~iIFID 193 (386)
T KOG0737|consen 183 ------------------------------------------------------SKL---------------QPSIIFID 193 (386)
T ss_pred ------------------------------------------------------hhc---------------Ccceeehh
Confidence 111 68999999
Q ss_pred ccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCCeEEEcCCC
Q psy2406 280 EIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSL 359 (464)
Q Consensus 280 EIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d~iV~f~~L 359 (464)
|||.....|.. +. +..-....+.|-...||...+ +...|++++|| ++|.+++.++++|++.++.++-+
T Consensus 194 Evds~L~~R~s-~d-HEa~a~mK~eFM~~WDGl~s~------~~~rVlVlgAT----NRP~DlDeAiiRR~p~rf~V~lP 261 (386)
T KOG0737|consen 194 EVDSFLGQRRS-TD-HEATAMMKNEFMALWDGLSSK------DSERVLVLGAT----NRPFDLDEAIIRRLPRRFHVGLP 261 (386)
T ss_pred hHHHHHhhccc-ch-HHHHHHHHHHHHHHhccccCC------CCceEEEEeCC----CCCccHHHHHHHhCcceeeeCCC
Confidence 99999887732 22 122224566777777875332 12347788887 69999999999999999999999
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHH
Q psy2406 360 SISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEK 425 (464)
Q Consensus 360 t~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~ 425 (464)
+..+..+|++ .+++ .+++.=.|+ +..||..+. +|..+.|+..+..
T Consensus 262 ~~~qR~kILk----viLk-------~e~~e~~vD---~~~iA~~t~-------GySGSDLkelC~~ 306 (386)
T KOG0737|consen 262 DAEQRRKILK----VILK-------KEKLEDDVD---LDEIAQMTE-------GYSGSDLKELCRL 306 (386)
T ss_pred chhhHHHHHH----HHhc-------ccccCcccC---HHHHHHhcC-------CCcHHHHHHHHHH
Confidence 9999999995 2222 223322222 556666663 4556666655543
No 51
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.76 E-value=1.2e-17 Score=179.04 Aligned_cols=86 Identities=19% Similarity=0.392 Sum_probs=67.8
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc--c
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--R 349 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~--R 349 (464)
.++||||||||++.+.++.....+.. ..+.+.||..|||- -..+++++|+|+ +.++.++|++++ |
T Consensus 289 ~p~IIfIDEiD~L~~~R~~~~s~d~e-~~il~~LL~~LDgl--------~~~~~ViVI~AT----N~~d~LDpALlRpGR 355 (512)
T TIGR03689 289 RPVIVFFDEMDSIFRTRGSGVSSDVE-TTVVPQLLSELDGV--------ESLDNVIVIGAS----NREDMIDPAILRPGR 355 (512)
T ss_pred CCceEEEehhhhhhcccCCCccchHH-HHHHHHHHHHhccc--------ccCCceEEEecc----CChhhCCHhhcCccc
Confidence 58999999999998876542223332 34556888889873 235678889987 578889999986 9
Q ss_pred CCeEEEcCCCCHHHHHHHHHh
Q psy2406 350 FPIRVELDSLSISDFTRIMTS 370 (464)
Q Consensus 350 ~d~iV~f~~Lt~~el~~Il~~ 370 (464)
||..|.|++++.+++.+|++.
T Consensus 356 fD~~I~~~~Pd~e~r~~Il~~ 376 (512)
T TIGR03689 356 LDVKIRIERPDAEAAADIFSK 376 (512)
T ss_pred cceEEEeCCCCHHHHHHHHHH
Confidence 999999999999999999963
No 52
>KOG0729|consensus
Probab=99.75 E-value=1.3e-18 Score=171.01 Aligned_cols=196 Identities=23% Similarity=0.334 Sum_probs=140.9
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 149 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~ 149 (464)
.|+++|||||||+|||.+||++|+..++-||++-+|++++ .|+|+. ..|+++||+.|
T Consensus 210 ppkgvllygppgtgktl~aravanrtdacfirvigselvq-kyvgeg-armvrelf~ma--------------------- 266 (435)
T KOG0729|consen 210 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEG-ARMVRELFEMA--------------------- 266 (435)
T ss_pred CCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH-HHhhhh-HHHHHHHHHHh---------------------
Confidence 6799999999999999999999999999999999999985 599975 67888888774
Q ss_pred HHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhc
Q psy2406 150 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 229 (464)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 229 (464)
T Consensus 267 -------------------------------------------------------------------------------- 266 (435)
T KOG0729|consen 267 -------------------------------------------------------------------------------- 266 (435)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccc
Q psy2406 230 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV 309 (464)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlL 309 (464)
+...-|||||||||.++..+... +.. .+-.||..+|.++
T Consensus 267 ---------------------------------------rtkkaciiffdeidaiggarfdd-g~g-gdnevqrtmleli 305 (435)
T KOG0729|consen 267 ---------------------------------------RTKKACIIFFDEIDAIGGARFDD-GAG-GDNEVQRTMLELI 305 (435)
T ss_pred ---------------------------------------cccceEEEEeeccccccCccccC-CCC-CcHHHHHHHHHHH
Confidence 00135899999999999888652 211 2224777777664
Q ss_pred ---cCceeeeeeeeecCceeEeeccCCccccCCCCCchhhh--ccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHh
Q psy2406 310 ---EGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLA 384 (464)
Q Consensus 310 ---EG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl--~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~ 384 (464)
||. -...||-+++++ ++|..++|+|+ +|+|..|+|..++.+-...|++.+.
T Consensus 306 ~qldgf--------dprgnikvlmat----nrpdtldpallrpgrldrkvef~lpdlegrt~i~kiha------------ 361 (435)
T KOG0729|consen 306 NQLDGF--------DPRGNIKVLMAT----NRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHA------------ 361 (435)
T ss_pred HhccCC--------CCCCCeEEEeec----CCCCCcCHhhcCCcccccceeccCCcccccceeEEEec------------
Confidence 553 245688788886 68999999998 8999999999999998888886431
Q ss_pred hcCceeEeCHHH-HHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHH
Q psy2406 385 TEGIKIEFVDDG-IQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYV 446 (464)
Q Consensus 385 ~~gi~L~~sdeA-l~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v 446 (464)
-...++.+. .+.||..|-. ..||- |++++. +.-||.+-...-..|..+.
T Consensus 362 ---ksmsverdir~ellarlcpn------stgae-irsvct---eagmfairarrk~atekdf 411 (435)
T KOG0729|consen 362 ---KSMSVERDIRFELLARLCPN------STGAE-IRSVCT---EAGMFAIRARRKVATEKDF 411 (435)
T ss_pred ---cccccccchhHHHHHhhCCC------CcchH-HHHHHH---HhhHHHHHHHhhhhhHHHH
Confidence 122333333 3456666633 57774 777664 3445555433323444333
No 53
>CHL00176 ftsH cell division protein; Validated
Probab=99.75 E-value=1.2e-17 Score=183.64 Aligned_cols=146 Identities=14% Similarity=0.182 Sum_probs=98.4
Q ss_pred CCcEEEEeccccccCcCCCCC-CCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhh--c
Q psy2406 272 QNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--G 348 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~-~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl--~ 348 (464)
.||||||||||.+++.++... +.+...+.+.+.||..|||.. ...++++|+++ +++..++|+++ +
T Consensus 275 ~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~--------~~~~ViVIaaT----N~~~~LD~ALlRpG 342 (638)
T CHL00176 275 SPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK--------GNKGVIVIAAT----NRVDILDAALLRPG 342 (638)
T ss_pred CCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc--------CCCCeeEEEec----CchHhhhhhhhccc
Confidence 589999999999987765321 222233345666777777632 34577888887 46777889988 5
Q ss_pred cCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHH
Q psy2406 349 RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 428 (464)
Q Consensus 349 R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~ 428 (464)
|||..|.|.+|+.+++.+|++. .++ ... ..++..+..||+... .+..+.|++++.....
T Consensus 343 RFd~~I~v~lPd~~~R~~IL~~----~l~-------~~~---~~~d~~l~~lA~~t~-------G~sgaDL~~lvneAal 401 (638)
T CHL00176 343 RFDRQITVSLPDREGRLDILKV----HAR-------NKK---LSPDVSLELIARRTP-------GFSGADLANLLNEAAI 401 (638)
T ss_pred cCceEEEECCCCHHHHHHHHHH----HHh-------hcc---cchhHHHHHHHhcCC-------CCCHHHHHHHHHHHHH
Confidence 9999999999999999999952 211 111 223556778887664 4567789998886543
Q ss_pred HHhcccCCCceeecHHHHHhHhCCC
Q psy2406 429 EVSFNSNNISLLVDADYVNSRLGDL 453 (464)
Q Consensus 429 ~~l~~~~~~~v~I~~e~v~~~~~~~ 453 (464)
..... ....||.++++.++.+.
T Consensus 402 ~a~r~---~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 402 LTARR---KKATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHh---CCCCcCHHHHHHHHHHH
Confidence 32211 22368888888876554
No 54
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.75 E-value=1.2e-17 Score=176.54 Aligned_cols=145 Identities=17% Similarity=0.212 Sum_probs=93.7
Q ss_pred CCcEEEEeccccccCcCCCCC-CCCcchhhHHHh---hhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRD---LLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~-~~d~~~~gvq~~---LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl 347 (464)
.++||||||||++...+.... +.+ ..++.. ||..|||. ....++.+|+++ +++..++|+++
T Consensus 276 ~P~ILfIDEID~l~~kR~~~~sgg~---~e~qr~ll~LL~~Ldg~--------~~~~~V~VI~AT----Nr~d~LDpaLl 340 (438)
T PTZ00361 276 APSIVFIDEIDAIGTKRYDATSGGE---KEIQRTMLELLNQLDGF--------DSRGDVKVIMAT----NRIESLDPALI 340 (438)
T ss_pred CCcEEeHHHHHHHhccCCCCCCccc---HHHHHHHHHHHHHHhhh--------cccCCeEEEEec----CChHHhhHHhc
Confidence 589999999999987764311 111 123333 44445552 123467888886 46788999987
Q ss_pred --ccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHH-HHHHHHHHhhccccCCCccChhHHHHHHH
Q psy2406 348 --GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDD-GIQRLAEIAYCINERTENIGARRLYTAME 424 (464)
Q Consensus 348 --~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sde-Al~~LA~~a~~~~~~~~~~GAR~L~r~IE 424 (464)
+|||..|.|++++.+++.+|+.. . +... .++++ -+..++.... .+.+..++.++.
T Consensus 341 RpGRfd~~I~~~~Pd~~~R~~Il~~----~-------~~k~----~l~~dvdl~~la~~t~-------g~sgAdI~~i~~ 398 (438)
T PTZ00361 341 RPGRIDRKIEFPNPDEKTKRRIFEI----H-------TSKM----TLAEDVDLEEFIMAKD-------ELSGADIKAICT 398 (438)
T ss_pred cCCeeEEEEEeCCCCHHHHHHHHHH----H-------HhcC----CCCcCcCHHHHHHhcC-------CCCHHHHHHHHH
Confidence 69999999999999999999852 1 1111 22222 2556666654 345566888776
Q ss_pred HHHHHHhcccCCCceeecHHHHHhHhCCCCCC
Q psy2406 425 KLLEEVSFNSNNISLLVDADYVNSRLGDLSIN 456 (464)
Q Consensus 425 ~~l~~~l~~~~~~~v~I~~e~v~~~~~~~~~~ 456 (464)
..-...+ ......|+.+++..++..++..
T Consensus 399 eA~~~Al---r~~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 399 EAGLLAL---RERRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred HHHHHHH---HhcCCccCHHHHHHHHHHHHhh
Confidence 5443322 2223579999999888776553
No 55
>KOG0726|consensus
Probab=99.73 E-value=4.4e-18 Score=168.85 Aligned_cols=208 Identities=18% Similarity=0.272 Sum_probs=144.2
Q ss_pred CCCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 69 NVILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 148 (464)
Q Consensus 69 ~~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~ 148 (464)
..|++++|||+||||||.||+++|+...+.|+++.+|++.+ .|.|+. -.+++.+|+.|-
T Consensus 217 kpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ-kylGdG-pklvRqlF~vA~------------------- 275 (440)
T KOG0726|consen 217 KPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ-KYLGDG-PKLVRELFRVAE------------------- 275 (440)
T ss_pred CCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH-HHhccc-hHHHHHHHHHHH-------------------
Confidence 37799999999999999999999999999999999999985 488865 467777777640
Q ss_pred HHHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhh
Q psy2406 149 EDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSV 228 (464)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~ 228 (464)
T Consensus 276 -------------------------------------------------------------------------------- 275 (440)
T KOG0726|consen 276 -------------------------------------------------------------------------------- 275 (440)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhcc
Q psy2406 229 IGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPL 308 (464)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLql 308 (464)
.. .|+||||||||.++.++.++++ -..+.+|+.+|.+
T Consensus 276 ---------------------------------------e~--apSIvFiDEIdAiGtKRyds~S--ggerEiQrtmLEL 312 (440)
T KOG0726|consen 276 ---------------------------------------EH--APSIVFIDEIDAIGTKRYDSNS--GGEREIQRTMLEL 312 (440)
T ss_pred ---------------------------------------hc--CCceEEeehhhhhccccccCCC--ccHHHHHHHHHHH
Confidence 11 4899999999999998876321 1233477766666
Q ss_pred c---cCceeeeeeeeecCceeEeeccCCccccCCCCCchhhh--ccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHH
Q psy2406 309 V---EGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALL 383 (464)
Q Consensus 309 L---EG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl--~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll 383 (464)
| ||.. ....+-+|+|+ ++...++|+|+ +|+|.-|+|+.+++....+|+..+
T Consensus 313 LNQldGFd--------srgDvKvimAT----nrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IH------------ 368 (440)
T KOG0726|consen 313 LNQLDGFD--------SRGDVKVIMAT----NRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIH------------ 368 (440)
T ss_pred HHhccCcc--------ccCCeEEEEec----ccccccCHhhcCCCccccccccCCCchhhhceeEEEe------------
Confidence 5 5532 23456678876 46778999988 899999999999999999888543
Q ss_pred hhcCceeEeCHHH-HHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHhCCCCCCC
Q psy2406 384 ATEGIKIEFVDDG-IQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGDLSINE 457 (464)
Q Consensus 384 ~~~gi~L~~sdeA-l~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~~~~~~~~ 457 (464)
-...++++++ ++.+.-.-.+ -.||- ++.++...=.-. +-+..-.++-++++++..++|.+.
T Consensus 369 ---Ts~Mtl~~dVnle~li~~kdd------lSGAd-IkAictEaGllA---lRerRm~vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 369 ---TSRMTLAEDVNLEELIMTKDD------LSGAD-IKAICTEAGLLA---LRERRMKVTMEDFKKAKEKVLYKK 430 (440)
T ss_pred ---ecccchhccccHHHHhhcccc------ccccc-HHHHHHHHhHHH---HHHHHhhccHHHHHHHHHHHHHhc
Confidence 1122333332 3344333322 35664 666665422111 111224678888888777776553
No 56
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.72 E-value=7.8e-17 Score=166.26 Aligned_cols=144 Identities=22% Similarity=0.257 Sum_probs=93.0
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccc---cCceeeeeeeeecCceeEeeccCCccccCCCCCchhhh-
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV---EGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ- 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlL---EG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl- 347 (464)
.|+||||||||.+...+.+.. ...+..++..|++++ ++. -..+++.+|+|+ +.+..++|+++
T Consensus 215 ~p~il~iDEiD~l~~~~~~~~--~~~~~~~~~~l~~ll~~ld~~--------~~~~~v~vI~tt----n~~~~ld~al~r 280 (364)
T TIGR01242 215 APSIIFIDEIDAIAAKRTDSG--TSGDREVQRTLMQLLAELDGF--------DPRGNVKVIAAT----NRPDILDPALLR 280 (364)
T ss_pred CCcEEEhhhhhhhccccccCC--CCccHHHHHHHHHHHHHhhCC--------CCCCCEEEEEec----CChhhCChhhcC
Confidence 578999999999987654311 111223444555544 431 124577888887 46777889988
Q ss_pred -ccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHH
Q psy2406 348 -GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 426 (464)
Q Consensus 348 -~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~ 426 (464)
+|||.+|.|++|+.+++.+|+.. . +. +..+. .+--+..|++.+. .+.++.|+.++...
T Consensus 281 ~grfd~~i~v~~P~~~~r~~Il~~----~-------~~--~~~l~-~~~~~~~la~~t~-------g~sg~dl~~l~~~A 339 (364)
T TIGR01242 281 PGRFDRIIEVPLPDFEGRLEILKI----H-------TR--KMKLA-EDVDLEAIAKMTE-------GASGADLKAICTEA 339 (364)
T ss_pred cccCceEEEeCCcCHHHHHHHHHH----H-------Hh--cCCCC-ccCCHHHHHHHcC-------CCCHHHHHHHHHHH
Confidence 59999999999999999999852 1 11 12111 0112567777664 46677888887755
Q ss_pred HHHHhcccCCCceeecHHHHHhHhCCC
Q psy2406 427 LEEVSFNSNNISLLVDADYVNSRLGDL 453 (464)
Q Consensus 427 l~~~l~~~~~~~v~I~~e~v~~~~~~~ 453 (464)
....+.. ....|+.+++.+++...
T Consensus 340 ~~~a~~~---~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 340 GMFAIRE---ERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHHHh---CCCccCHHHHHHHHHHh
Confidence 4443322 23468999998887654
No 57
>KOG0652|consensus
Probab=99.72 E-value=1.3e-17 Score=163.65 Aligned_cols=85 Identities=29% Similarity=0.439 Sum_probs=65.9
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccc---cCceeeeeeeeecCceeEeeccCCccccCCCCCchhhh-
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV---EGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ- 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlL---EG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl- 347 (464)
.|+||||||+|.++.++..+ ....++.||..+|.+| ||.. .+..+-+|+++ ++..-++|+|+
T Consensus 264 aP~IIFIDElDAIGtKRfDS--ek~GDREVQRTMLELLNQLDGFs--------s~~~vKviAAT----NRvDiLDPALlR 329 (424)
T KOG0652|consen 264 APTIIFIDELDAIGTKRFDS--EKAGDREVQRTMLELLNQLDGFS--------SDDRVKVIAAT----NRVDILDPALLR 329 (424)
T ss_pred CCeEEEEechhhhccccccc--cccccHHHHHHHHHHHHhhcCCC--------CccceEEEeec----ccccccCHHHhh
Confidence 48999999999999988752 2234456777776665 5632 45567778886 45666899988
Q ss_pred -ccCCeEEEcCCCCHHHHHHHHHh
Q psy2406 348 -GRFPIRVELDSLSISDFTRIMTS 370 (464)
Q Consensus 348 -~R~d~iV~f~~Lt~~el~~Il~~ 370 (464)
+|+|..|+|+.++++...+|++.
T Consensus 330 SGRLDRKIEfP~Pne~aRarIlQI 353 (424)
T KOG0652|consen 330 SGRLDRKIEFPHPNEEARARILQI 353 (424)
T ss_pred cccccccccCCCCChHHHHHHHHH
Confidence 89999999999999999999864
No 58
>KOG0740|consensus
Probab=99.71 E-value=9.7e-17 Score=167.67 Aligned_cols=184 Identities=24% Similarity=0.331 Sum_probs=137.8
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAED 150 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~ 150 (464)
++++||+||||+|||+|++|+|.+.++.|+.+++++++ +.|+|+. |.++|.|+..|
T Consensus 186 ~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLt-sK~~Ge~-eK~vralf~vA---------------------- 241 (428)
T KOG0740|consen 186 VRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLT-SKYVGES-EKLVRALFKVA---------------------- 241 (428)
T ss_pred cchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhh-hhccChH-HHHHHHHHHHH----------------------
Confidence 36899999999999999999999999999999999998 5699987 88888887774
Q ss_pred HHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhcC
Q psy2406 151 RVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIG 230 (464)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~ 230 (464)
T Consensus 242 -------------------------------------------------------------------------------- 241 (428)
T KOG0740|consen 242 -------------------------------------------------------------------------------- 241 (428)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhcccc
Q psy2406 231 NHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVE 310 (464)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLE 310 (464)
++.+|+||||||||++...+.. ...+.+++-..+.|+| ++
T Consensus 242 --------------------------------------r~~qPsvifidEidslls~Rs~-~e~e~srr~ktefLiq-~~ 281 (428)
T KOG0740|consen 242 --------------------------------------RSLQPSVIFIDEIDSLLSKRSD-NEHESSRRLKTEFLLQ-FD 281 (428)
T ss_pred --------------------------------------HhcCCeEEEechhHHHHhhcCC-cccccchhhhhHHHhh-hc
Confidence 2237999999999999988743 2233333333334444 44
Q ss_pred CceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCcee
Q psy2406 311 GTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKI 390 (464)
Q Consensus 311 G~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L 390 (464)
|... ...++|++|+|+ +.|+.++-+++.||--++.++.++.+....+++ +++..+ .-
T Consensus 282 ~~~s------~~~drvlvigaT----N~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~-----------~ll~~~--~~ 338 (428)
T KOG0740|consen 282 GKNS------APDDRVLVIGAT----NRPWELDEAARRRFVKRLYIPLPDYETRSLLWK-----------QLLKEQ--PN 338 (428)
T ss_pred cccC------CCCCeEEEEecC----CCchHHHHHHHHHhhceeeecCCCHHHHHHHHH-----------HHHHhC--CC
Confidence 4321 234588999997 689999999999999999999999999888873 334344 34
Q ss_pred EeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHH
Q psy2406 391 EFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 428 (464)
Q Consensus 391 ~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~ 428 (464)
.+++..++.||+.... |+.=.+..++.....
T Consensus 339 ~l~~~d~~~l~~~Teg-------ysgsdi~~l~kea~~ 369 (428)
T KOG0740|consen 339 GLSDLDISLLAKVTEG-------YSGSDITALCKEAAM 369 (428)
T ss_pred CccHHHHHHHHHHhcC-------cccccHHHHHHHhhc
Confidence 6678889999998854 333345555554433
No 59
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=3e-16 Score=166.79 Aligned_cols=124 Identities=16% Similarity=0.272 Sum_probs=95.9
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.|++|||+|.+... .++.||+.||.. ..+++||+++ +++..+.|.+++|+-
T Consensus 121 ~~KV~IIDEah~Ls~~-------------A~NALLKtLEEP----------p~~viFILaT----te~~kI~~TI~SRCq 173 (484)
T PRK14956 121 KYKVYIIDEVHMLTDQ-------------SFNALLKTLEEP----------PAHIVFILAT----TEFHKIPETILSRCQ 173 (484)
T ss_pred CCEEEEEechhhcCHH-------------HHHHHHHHhhcC----------CCceEEEeec----CChhhccHHHHhhhh
Confidence 5779999999999753 677999999852 3467888776 357789999999996
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
++.|.+++.+++.+.++ ..+..+|+ .++++|+..||+.+ ++++|...+++++++.-
T Consensus 174 -~~~f~~ls~~~i~~~L~-----------~i~~~Egi--~~e~eAL~~Ia~~S--------~Gd~RdAL~lLeq~i~~-- 229 (484)
T PRK14956 174 -DFIFKKVPLSVLQDYSE-----------KLCKIENV--QYDQEGLFWIAKKG--------DGSVRDMLSFMEQAIVF-- 229 (484)
T ss_pred -eeeecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CChHHHHHHHHHHHHHh--
Confidence 47999999999888774 23334564 78999999999998 68999999999987632
Q ss_pred cccCCCceeecHHHHHhHhC
Q psy2406 432 FNSNNISLLVDADYVNSRLG 451 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~ 451 (464)
... .||.+.|.+.++
T Consensus 230 ---~~~--~it~~~V~~~lg 244 (484)
T PRK14956 230 ---TDS--KLTGVKIRKMIG 244 (484)
T ss_pred ---CCC--CcCHHHHHHHhC
Confidence 112 367777776654
No 60
>KOG0651|consensus
Probab=99.70 E-value=2.3e-17 Score=164.90 Aligned_cols=200 Identities=25% Similarity=0.287 Sum_probs=139.6
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 149 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~ 149 (464)
.|++++||||||+|||.+|+++|..+|++|+.+.++.+. .+|.|++ ..+|++.++.|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv-~kyiGEs-aRlIRemf~yA--------------------- 221 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV-DKYIGES-ARLIRDMFRYA--------------------- 221 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh-hhhcccH-HHHHHHHHHHH---------------------
Confidence 779999999999999999999999999999999999986 5788875 56666555443
Q ss_pred HHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhc
Q psy2406 150 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 229 (464)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 229 (464)
T Consensus 222 -------------------------------------------------------------------------------- 221 (388)
T KOG0651|consen 222 -------------------------------------------------------------------------------- 221 (388)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccc
Q psy2406 230 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV 309 (464)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlL 309 (464)
+.. .+||||+||||.++.++.+ ...+.++.+|..|..++
T Consensus 222 --------------------------------------~~~-~pciifmdeiDAigGRr~s--e~Ts~dreiqrTLMeLl 260 (388)
T KOG0651|consen 222 --------------------------------------REV-IPCIIFMDEIDAIGGRRFS--EGTSSDREIQRTLMELL 260 (388)
T ss_pred --------------------------------------hhh-CceEEeehhhhhhccEEec--cccchhHHHHHHHHHHH
Confidence 111 4799999999999988743 44566677888887777
Q ss_pred cCceeeeeeeeecCceeEeeccCCccccCCCCCchhhh--ccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcC
Q psy2406 310 EGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEG 387 (464)
Q Consensus 310 EG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl--~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~g 387 (464)
++- .+.-....+-+|||| ++|+.+.|+|+ +|+|..+..+.+++-....|++.+...+ .-+|
T Consensus 261 nqm-----dgfd~l~rVk~Imat----NrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i--------~~~G 323 (388)
T KOG0651|consen 261 NQM-----DGFDTLHRVKTIMAT----NRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPI--------DFHG 323 (388)
T ss_pred Hhh-----ccchhcccccEEEec----CCccccchhhcCCccccceeccCCcchhhceeeEeeccccc--------cccc
Confidence 621 011223455678887 58999999998 8999999999888887777776442211 1112
Q ss_pred ceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHH
Q psy2406 388 IKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYV 446 (464)
Q Consensus 388 i~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v 446 (464)
.++++++-.+.+.. .||- +++..+ +..+|.+++....+-.|+.
T Consensus 324 ---eid~eaivK~~d~f---------~gad-~rn~~t---Eag~Fa~~~~~~~vl~Ed~ 366 (388)
T KOG0651|consen 324 ---EIDDEAILKLVDGF---------NGAD-LRNVCT---EAGMFAIPEERDEVLHEDF 366 (388)
T ss_pred ---cccHHHHHHHHhcc---------ChHH-Hhhhcc---cccccccchhhHHHhHHHH
Confidence 34455555544322 3444 665544 4567888765544444443
No 61
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.70 E-value=3e-16 Score=173.31 Aligned_cols=146 Identities=17% Similarity=0.188 Sum_probs=98.3
Q ss_pred CCcEEEEeccccccCcCCCCC-CCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhh--c
Q psy2406 272 QNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--G 348 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~-~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl--~ 348 (464)
+||||||||||.++..+.... +.+...+.+.+.||..|||.. ...++++|+|+ +.|+.++|+++ +
T Consensus 244 ~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~--------~~~~vivIaaT----N~p~~lD~Al~Rpg 311 (644)
T PRK10733 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE--------GNEGIIVIAAT----NRPDVLDPALLRPG 311 (644)
T ss_pred CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhccc--------CCCCeeEEEec----CChhhcCHHHhCCc
Confidence 589999999999988776422 233344557778888888732 34567889887 57888999998 5
Q ss_pred cCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHH
Q psy2406 349 RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 428 (464)
Q Consensus 349 R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~ 428 (464)
|||..|.|..++.+++.+|++. . +....+.-.++ +..||+... ++.++.|.+++.....
T Consensus 312 Rfdr~i~v~~Pd~~~R~~Il~~----~-------~~~~~l~~~~d---~~~la~~t~-------G~sgadl~~l~~eAa~ 370 (644)
T PRK10733 312 RFDRQVVVGLPDVRGREQILKV----H-------MRRVPLAPDID---AAIIARGTP-------GFSGADLANLVNEAAL 370 (644)
T ss_pred ccceEEEcCCCCHHHHHHHHHH----H-------hhcCCCCCcCC---HHHHHhhCC-------CCCHHHHHHHHHHHHH
Confidence 9999999999999999999852 1 11111111222 345666553 4566788888876554
Q ss_pred HHhcccCCCceeecHHHHHhHhCCC
Q psy2406 429 EVSFNSNNISLLVDADYVNSRLGDL 453 (464)
Q Consensus 429 ~~l~~~~~~~v~I~~e~v~~~~~~~ 453 (464)
.... .+.-.|+.++++.+..+.
T Consensus 371 ~a~r---~~~~~i~~~d~~~a~~~v 392 (644)
T PRK10733 371 FAAR---GNKRVVSMVEFEKAKDKI 392 (644)
T ss_pred HHHH---cCCCcccHHHHHHHHHHH
Confidence 3322 223467888887765433
No 62
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.69 E-value=9.6e-16 Score=153.36 Aligned_cols=140 Identities=14% Similarity=0.236 Sum_probs=94.7
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeee--------eeeecCceeEeeccCCccccCCCCCc
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK--------YGIIKTDHILFIASGAFHLAKPSDLI 343 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~--------~~~i~Tsnil~I~ag~f~~~~p~~f~ 343 (464)
.++|+||||||++.+. .+..|+.+|++...+.- ..........+|+++ +++..+.
T Consensus 81 ~~~vl~iDEi~~l~~~-------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t----~~~~~l~ 143 (305)
T TIGR00635 81 EGDVLFIDEIHRLSPA-------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGAT----TRAGMLT 143 (305)
T ss_pred cCCEEEEehHhhhCHH-------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEec----CCccccC
Confidence 5689999999999743 45577778875543310 011122234566665 3566788
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHH
Q psy2406 344 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 423 (464)
Q Consensus 344 PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~I 423 (464)
+++++||..++.|.+++.+++.+|++. .+... .+.++++++++|++.+ .+.+|.+.+++
T Consensus 144 ~~l~sR~~~~~~l~~l~~~e~~~il~~-----------~~~~~--~~~~~~~al~~ia~~~--------~G~pR~~~~ll 202 (305)
T TIGR00635 144 SPLRDRFGIILRLEFYTVEELAEIVSR-----------SAGLL--NVEIEPEAALEIARRS--------RGTPRIANRLL 202 (305)
T ss_pred HHHHhhcceEEEeCCCCHHHHHHHHHH-----------HHHHh--CCCcCHHHHHHHHHHh--------CCCcchHHHHH
Confidence 999999998899999999999999852 11222 3478999999999987 45678888888
Q ss_pred HHHHHHHhcccCCCceeecHHHHHhHhCC
Q psy2406 424 EKLLEEVSFNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 424 E~~l~~~l~~~~~~~v~I~~e~v~~~~~~ 452 (464)
+.+..-. .... . -.||.+.++..+..
T Consensus 203 ~~~~~~a-~~~~-~-~~it~~~v~~~l~~ 228 (305)
T TIGR00635 203 RRVRDFA-QVRG-Q-KIINRDIALKALEM 228 (305)
T ss_pred HHHHHHH-HHcC-C-CCcCHHHHHHHHHH
Confidence 7653221 1111 1 24788888877765
No 63
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.69 E-value=4.4e-16 Score=163.47 Aligned_cols=128 Identities=27% Similarity=0.400 Sum_probs=93.0
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCC-CCCchhhhccC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKP-SDLIPELQGRF 350 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p-~~f~PEfl~R~ 350 (464)
.+.||||||||++... .|+.||+.++.+. +++|++++ .++ ..+.|++++|+
T Consensus 92 ~~~vL~IDEi~~l~~~-------------~q~~LL~~le~~~------------iilI~att---~n~~~~l~~aL~SR~ 143 (413)
T PRK13342 92 RRTILFIDEIHRFNKA-------------QQDALLPHVEDGT------------ITLIGATT---ENPSFEVNPALLSRA 143 (413)
T ss_pred CceEEEEechhhhCHH-------------HHHHHHHHhhcCc------------EEEEEeCC---CChhhhccHHHhccc
Confidence 4679999999998643 6779999998643 34555542 344 35889999999
Q ss_pred CeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHH
Q psy2406 351 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 430 (464)
Q Consensus 351 d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~ 430 (464)
.++.|.+|+.+++..++.. .+... ..++ +.+++++++.|++.+ .+++|.+.++++.....
T Consensus 144 -~~~~~~~ls~e~i~~lL~~----~l~~~-----~~~~-i~i~~~al~~l~~~s--------~Gd~R~aln~Le~~~~~- 203 (413)
T PRK13342 144 -QVFELKPLSEEDIEQLLKR----ALEDK-----ERGL-VELDDEALDALARLA--------NGDARRALNLLELAALG- 203 (413)
T ss_pred -eeeEeCCCCHHHHHHHHHH----HHHHh-----hcCC-CCCCHHHHHHHHHhC--------CCCHHHHHHHHHHHHHc-
Confidence 5689999999999998852 22211 1233 488999999999887 47899999999876532
Q ss_pred hcccCCCceeecHHHHHhHhCCCC
Q psy2406 431 SFNSNNISLLVDADYVNSRLGDLS 454 (464)
Q Consensus 431 l~~~~~~~v~I~~e~v~~~~~~~~ 454 (464)
...||.++++..++...
T Consensus 204 -------~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 204 -------VDSITLELLEEALQKRA 220 (413)
T ss_pred -------cCCCCHHHHHHHHhhhh
Confidence 12478888888776544
No 64
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.69 E-value=1.1e-15 Score=155.55 Aligned_cols=140 Identities=15% Similarity=0.248 Sum_probs=95.0
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee--------eeecCceeEeeccCCccccCCCCCc
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY--------GIIKTDHILFIASGAFHLAKPSDLI 343 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~--------~~i~Tsnil~I~ag~f~~~~p~~f~ 343 (464)
.++||||||||++... +++.|++.|++..++.-. ....-....+|+++ +++..+.
T Consensus 102 ~~~vl~IDEi~~l~~~-------------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at----~~~~~l~ 164 (328)
T PRK00080 102 EGDVLFIDEIHRLSPV-------------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGAT----TRAGLLT 164 (328)
T ss_pred cCCEEEEecHhhcchH-------------HHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeec----CCcccCC
Confidence 5789999999999643 445677777765443210 11112234566665 3556788
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHH
Q psy2406 344 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 423 (464)
Q Consensus 344 PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~I 423 (464)
+++.+||..++.|.+++.+++.+|+.. ..... .+.++++++++|++.+ .+..|.+.+++
T Consensus 165 ~~L~sRf~~~~~l~~~~~~e~~~il~~-----------~~~~~--~~~~~~~~~~~ia~~~--------~G~pR~a~~~l 223 (328)
T PRK00080 165 SPLRDRFGIVQRLEFYTVEELEKIVKR-----------SARIL--GVEIDEEGALEIARRS--------RGTPRIANRLL 223 (328)
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHH-----------HHHHc--CCCcCHHHHHHHHHHc--------CCCchHHHHHH
Confidence 999999999999999999999999852 12222 4578999999999888 45678888888
Q ss_pred HHHHHHHhcccCCCceeecHHHHHhHhCC
Q psy2406 424 EKLLEEVSFNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 424 E~~l~~~l~~~~~~~v~I~~e~v~~~~~~ 452 (464)
+++..-.... ..-.|+.+.++..+..
T Consensus 224 ~~~~~~a~~~---~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 224 RRVRDFAQVK---GDGVITKEIADKALDM 249 (328)
T ss_pred HHHHHHHHHc---CCCCCCHHHHHHHHHH
Confidence 7654322211 1125777887777654
No 65
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.69 E-value=6.6e-16 Score=167.22 Aligned_cols=144 Identities=15% Similarity=0.176 Sum_probs=102.9
Q ss_pred HhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeee------------------eecCceeEe
Q psy2406 267 INNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG------------------IIKTDHILF 328 (464)
Q Consensus 267 v~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~------------------~i~Tsnil~ 328 (464)
+.++ .++++||||||.+++. +|+.||++|+.+.+....+ .--..++.+
T Consensus 171 l~~a-~gG~L~IdEI~~L~~~-------------~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rl 236 (531)
T TIGR02902 171 VTRA-HGGVLFIDEIGELHPV-------------QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRL 236 (531)
T ss_pred hhcc-CCcEEEEechhhCCHH-------------HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEE
Confidence 3455 7899999999999865 7889999998654432100 001344566
Q ss_pred eccCCccccCCCCCchhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccc
Q psy2406 329 IASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCIN 408 (464)
Q Consensus 329 I~ag~f~~~~p~~f~PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~ 408 (464)
|++|+ +.|..++|++++|+.. +.|++|+.+++.+|++. .+...+ +.+++++++.|+.++.
T Consensus 237 I~ATt---~~p~~L~paLrsR~~~-I~f~pL~~eei~~Il~~-----------~a~k~~--i~is~~al~~I~~y~~--- 296 (531)
T TIGR02902 237 IGATT---RNPEEIPPALRSRCVE-IFFRPLLDEEIKEIAKN-----------AAEKIG--INLEKHALELIVKYAS--- 296 (531)
T ss_pred EEEec---CCcccCChHHhhhhhe-eeCCCCCHHHHHHHHHH-----------HHHHcC--CCcCHHHHHHHHHhhh---
Confidence 77653 5688899999999965 68999999999999852 122234 5789999999987552
Q ss_pred cCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHhCCC
Q psy2406 409 ERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGDL 453 (464)
Q Consensus 409 ~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~~~~ 453 (464)
.+|.+.++++....-... +....|+.+++++.++..
T Consensus 297 ------n~Rel~nll~~Aa~~A~~---~~~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 297 ------NGREAVNIVQLAAGIALG---EGRKRILAEDIEWVAENG 332 (531)
T ss_pred ------hHHHHHHHHHHHHHHHhh---CCCcEEcHHHHHHHhCCc
Confidence 359999999876543221 233579999999997654
No 66
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.4e-15 Score=162.46 Aligned_cols=126 Identities=20% Similarity=0.320 Sum_probs=95.1
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.||||||+|.+... .++.||..|+.. ..+++||+++ ++|..+.|++.+|+.
T Consensus 117 ~~kVvIIDE~h~Lt~~-------------a~~~LLk~LE~p----------~~~vv~Ilat----tn~~kl~~~L~SR~~ 169 (472)
T PRK14962 117 KYKVYIIDEVHMLTKE-------------AFNALLKTLEEP----------PSHVVFVLAT----TNLEKVPPTIISRCQ 169 (472)
T ss_pred CeEEEEEEChHHhHHH-------------HHHHHHHHHHhC----------CCcEEEEEEe----CChHhhhHHHhcCcE
Confidence 5679999999999643 567899999851 2345666655 256678999999995
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
++.|.+++.+++..++. +.+..+|+ .++++|++.|++.+ .+++|.+.+.++++...
T Consensus 170 -vv~f~~l~~~el~~~L~-----------~i~~~egi--~i~~eal~~Ia~~s--------~GdlR~aln~Le~l~~~-- 225 (472)
T PRK14962 170 -VIEFRNISDELIIKRLQ-----------EVAEAEGI--EIDREALSFIAKRA--------SGGLRDALTMLEQVWKF-- 225 (472)
T ss_pred -EEEECCccHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHh--------CCCHHHHHHHHHHHHHh--
Confidence 68999999999888874 22333455 78999999999987 57999999999886532
Q ss_pred cccCCCceeecHHHHHhHhCCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGDL 453 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~~ 453 (464)
... .||.++|+..++..
T Consensus 226 ---~~~--~It~e~V~~~l~~~ 242 (472)
T PRK14962 226 ---SEG--KITLETVHEALGLI 242 (472)
T ss_pred ---cCC--CCCHHHHHHHHcCC
Confidence 112 38999998887654
No 67
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.66 E-value=2.1e-15 Score=168.03 Aligned_cols=139 Identities=23% Similarity=0.332 Sum_probs=98.0
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCC-CCchhhhccC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS-DLIPELQGRF 350 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~-~f~PEfl~R~ 350 (464)
.+.|+||||||.+... .|+.|++.++.+. +++|++++ .+|. .+.+++++|+
T Consensus 109 ~~~IL~IDEIh~Ln~~-------------qQdaLL~~lE~g~------------IiLI~aTT---enp~~~l~~aL~SR~ 160 (725)
T PRK13341 109 KRTILFIDEVHRFNKA-------------QQDALLPWVENGT------------ITLIGATT---ENPYFEVNKALVSRS 160 (725)
T ss_pred CceEEEEeChhhCCHH-------------HHHHHHHHhcCce------------EEEEEecC---CChHhhhhhHhhccc
Confidence 4679999999998643 5779999888643 45666653 3443 4789999998
Q ss_pred CeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHH
Q psy2406 351 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 430 (464)
Q Consensus 351 d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~ 430 (464)
. ++.|++|+.+++..|+.. .+.+....+... .+.++++++++|++.+ .+++|.+.++++..+...
T Consensus 161 ~-v~~l~pLs~edi~~IL~~----~l~~~~~~~g~~--~v~I~deaL~~La~~s--------~GD~R~lln~Le~a~~~~ 225 (725)
T PRK13341 161 R-LFRLKSLSDEDLHQLLKR----ALQDKERGYGDR--KVDLEPEAEKHLVDVA--------NGDARSLLNALELAVEST 225 (725)
T ss_pred c-ceecCCCCHHHHHHHHHH----HHHHHHhhcCCc--ccCCCHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhc
Confidence 5 589999999999999952 333222222222 4588999999999877 479999999999876421
Q ss_pred hcccCCCceeecHHHHHhHhCCCC
Q psy2406 431 SFNSNNISLLVDADYVNSRLGDLS 454 (464)
Q Consensus 431 l~~~~~~~v~I~~e~v~~~~~~~~ 454 (464)
.. .....+.||.+.+++.++...
T Consensus 226 ~~-~~~~~i~It~~~~~e~l~~~~ 248 (725)
T PRK13341 226 PP-DEDGLIDITLAIAEESIQQRA 248 (725)
T ss_pred cc-CCCCceeccHHHHHHHHHHhh
Confidence 11 111235688888888776643
No 68
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.64 E-value=5.8e-16 Score=134.23 Aligned_cols=72 Identities=28% Similarity=0.517 Sum_probs=53.4
Q ss_pred CcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhh-ccCC
Q psy2406 273 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ-GRFP 351 (464)
Q Consensus 273 ~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl-~R~d 351 (464)
++||||||+|++.+... ...+.....+++.|+..++...- ..+++++|++++ .++.+.|+++ +||+
T Consensus 59 ~~vl~iDe~d~l~~~~~--~~~~~~~~~~~~~L~~~l~~~~~-------~~~~~~vI~ttn----~~~~i~~~l~~~rf~ 125 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQ--PSSSSFEQRLLNQLLSLLDNPSS-------KNSRVIVIATTN----SPDKIDPALLRSRFD 125 (132)
T ss_dssp SEEEEEETGGGTSHHCS--TSSSHHHHHHHHHHHHHHHTTTT-------TSSSEEEEEEES----SGGGSCHHHHSTTSE
T ss_pred ceeeeeccchhcccccc--cccccccccccceeeeccccccc-------ccccceeEEeeC----ChhhCCHhHHhCCCc
Confidence 79999999999998762 12334444577788888886321 135688898873 5778999999 9999
Q ss_pred eEEEcC
Q psy2406 352 IRVELD 357 (464)
Q Consensus 352 ~iV~f~ 357 (464)
.+|.|+
T Consensus 126 ~~i~~~ 131 (132)
T PF00004_consen 126 RRIEFP 131 (132)
T ss_dssp EEEEE-
T ss_pred EEEEcC
Confidence 998875
No 69
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=2.8e-15 Score=161.46 Aligned_cols=126 Identities=21% Similarity=0.295 Sum_probs=95.1
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.|++|||+|.+++. .++.||+.||.. ..++.||+++ +++..+.+.+++|+-
T Consensus 119 ~~kV~iIDE~~~ls~~-------------a~naLLk~LEep----------p~~~~fIlat----td~~kl~~tI~SRc~ 171 (509)
T PRK14958 119 RFKVYLIDEVHMLSGH-------------SFNALLKTLEEP----------PSHVKFILAT----TDHHKLPVTVLSRCL 171 (509)
T ss_pred CcEEEEEEChHhcCHH-------------HHHHHHHHHhcc----------CCCeEEEEEE----CChHhchHHHHHHhh
Confidence 5789999999999754 467999999852 3456677665 356678888999995
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
++.|++++.+++.+.+. ..+..+|+ .++++++..|++.+ +++.|.+.+.+++.+.
T Consensus 172 -~~~f~~l~~~~i~~~l~-----------~il~~egi--~~~~~al~~ia~~s--------~GslR~al~lLdq~ia--- 226 (509)
T PRK14958 172 -QFHLAQLPPLQIAAHCQ-----------HLLKEENV--EFENAALDLLARAA--------NGSVRDALSLLDQSIA--- 226 (509)
T ss_pred -hhhcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCcHHHHHHHHHHHHh---
Confidence 57999999999887763 33444565 67899999999888 5789999999988752
Q ss_pred cccCCCceeecHHHHHhHhCCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGDL 453 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~~ 453 (464)
|. .+ .||.++|.+.++..
T Consensus 227 ~~--~~--~It~~~V~~~lg~~ 244 (509)
T PRK14958 227 YG--NG--KVLIADVKTMLGTI 244 (509)
T ss_pred cC--CC--CcCHHHHHHHHCCC
Confidence 32 12 57888888776643
No 70
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=5.4e-15 Score=161.67 Aligned_cols=125 Identities=22% Similarity=0.330 Sum_probs=94.7
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.|++|||+|.+... .++.||+.||.. ..++.||+++ +++..+.+.+++|+.
T Consensus 118 k~KV~IIDEVh~LS~~-------------A~NALLKtLEEP----------P~~v~FILaT----td~~kIp~TIlSRCq 170 (702)
T PRK14960 118 RFKVYLIDEVHMLSTH-------------SFNALLKTLEEP----------PEHVKFLFAT----TDPQKLPITVISRCL 170 (702)
T ss_pred CcEEEEEechHhcCHH-------------HHHHHHHHHhcC----------CCCcEEEEEE----CChHhhhHHHHHhhh
Confidence 5779999999999754 467999999852 2345666665 356667889999995
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
++.|++|+.+++.+.+. ..+..+|+ .++++++..||+.+ +++.|.+.+.+++++.
T Consensus 171 -~feFkpLs~eEI~k~L~-----------~Il~kEgI--~id~eAL~~IA~~S--------~GdLRdALnLLDQaIa--- 225 (702)
T PRK14960 171 -QFTLRPLAVDEITKHLG-----------AILEKEQI--AADQDAIWQIAESA--------QGSLRDALSLTDQAIA--- 225 (702)
T ss_pred -eeeccCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 57999999999988874 23444565 78999999999888 5789999999887663
Q ss_pred cccCCCceeecHHHHHhHhCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~ 452 (464)
+. .-.||.++|...++.
T Consensus 226 yg----~g~IT~edV~~lLG~ 242 (702)
T PRK14960 226 YG----QGAVHHQDVKEMLGL 242 (702)
T ss_pred hc----CCCcCHHHHHHHhcc
Confidence 21 124788888887664
No 71
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=5e-15 Score=163.53 Aligned_cols=124 Identities=19% Similarity=0.301 Sum_probs=93.1
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.|+||||+|.+... .++.||+.||. ...++.||+++ +++..+.+.++|||
T Consensus 119 r~KVIIIDEah~LT~~-------------A~NALLKtLEE----------PP~~v~FILaT----td~~KIp~TIrSRC- 170 (830)
T PRK07003 119 RFKVYMIDEVHMLTNH-------------AFNAMLKTLEE----------PPPHVKFILAT----TDPQKIPVTVLSRC- 170 (830)
T ss_pred CceEEEEeChhhCCHH-------------HHHHHHHHHHh----------cCCCeEEEEEE----CChhhccchhhhhe-
Confidence 5779999999999743 46799999985 23466788876 46778999999999
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
.++.|++++.+++.+.|+ +.+..+|+ .+++++++.|++.+ .++.|...+++++.+..
T Consensus 171 q~f~Fk~Ls~eeIv~~L~-----------~Il~~EgI--~id~eAL~lIA~~A--------~GsmRdALsLLdQAia~-- 227 (830)
T PRK07003 171 LQFNLKQMPAGHIVSHLE-----------RILGEERI--AFEPQALRLLARAA--------QGSMRDALSLTDQAIAY-- 227 (830)
T ss_pred EEEecCCcCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHHh--
Confidence 568999999999988874 23344565 78999999999998 57889888888776531
Q ss_pred cccCCCceeecHHHHHhHhC
Q psy2406 432 FNSNNISLLVDADYVNSRLG 451 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~ 451 (464)
. .+ .|+.+.|...++
T Consensus 228 -~--~~--~It~~~V~~~LG 242 (830)
T PRK07003 228 -S--AN--EVTETAVSGMLG 242 (830)
T ss_pred -c--cC--CcCHHHHHHHhC
Confidence 1 11 356666655544
No 72
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=7.2e-15 Score=164.73 Aligned_cols=107 Identities=20% Similarity=0.359 Sum_probs=84.5
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.|++|||+|++... .++.||+.||.. ..++.||+++ +++..+.|.+++|+
T Consensus 119 k~KViIIDEAh~LT~e-------------AqNALLKtLEEP----------P~~vrFILaT----Te~~kLl~TIlSRC- 170 (944)
T PRK14949 119 RFKVYLIDEVHMLSRS-------------SFNALLKTLEEP----------PEHVKFLLAT----TDPQKLPVTVLSRC- 170 (944)
T ss_pred CcEEEEEechHhcCHH-------------HHHHHHHHHhcc----------CCCeEEEEEC----CCchhchHHHHHhh-
Confidence 5779999999999754 678999999852 3355666664 35667889999999
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 427 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l 427 (464)
.++.|++|+.+++...+. ..+..++ +.+++++++.|++.+ +++.|.+.+++++.+
T Consensus 171 q~f~fkpLs~eEI~~~L~-----------~il~~Eg--I~~edeAL~lIA~~S--------~Gd~R~ALnLLdQal 225 (944)
T PRK14949 171 LQFNLKSLTQDEIGTQLN-----------HILTQEQ--LPFEAEALTLLAKAA--------NGSMRDALSLTDQAI 225 (944)
T ss_pred eEEeCCCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHHc--------CCCHHHHHHHHHHHH
Confidence 568999999999988874 2233334 578999999999887 578999999998776
No 73
>KOG0741|consensus
Probab=99.62 E-value=5.6e-16 Score=163.29 Aligned_cols=220 Identities=20% Similarity=0.231 Sum_probs=143.1
Q ss_pred cCchhHhhhhhhcchhHHHH-hhhhhcccccccCCCCCCccccccC-CC--cceEEEecCCCchHHHHHHHHHHhCCC-e
Q psy2406 25 APSANNLRNKFGIRKAILKA-SVYIDAPNTRANNISRNNPVIRENN-VI--LDMVIKVLLLVGKTEIARRLAKLSNAP-F 99 (464)
Q Consensus 25 ~~~~~~~l~~~~igq~~~~~-~v~~~~~~~r~~~~~~~~~~~~~~~-~p--~~iLl~GP~G~GKT~LAr~lA~~l~~~-~ 99 (464)
++..+=-+.+.+||--.... .++. ||..+.-.+|...+.. ++ ++||||||||||||.+||.|.+.+++. -
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFR-----RAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAreP 285 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFR-----RAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREP 285 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHH-----HHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCC
Confidence 34444445566777433332 2222 4444344455443332 33 899999999999999999999999875 4
Q ss_pred EEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCcccchhHH
Q psy2406 100 IKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTR 179 (464)
Q Consensus 100 i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 179 (464)
-.++++++. ..|||++.+ =+|+||..|=.+.|. +|.
T Consensus 286 KIVNGPeIL-~KYVGeSE~-NvR~LFaDAEeE~r~----------------------~g~-------------------- 321 (744)
T KOG0741|consen 286 KIVNGPEIL-NKYVGESEE-NVRKLFADAEEEQRR----------------------LGA-------------------- 321 (744)
T ss_pred cccCcHHHH-HHhhcccHH-HHHHHHHhHHHHHHh----------------------hCc--------------------
Confidence 446777765 579999854 467787775111110 000
Q ss_pred HHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeHHHHHHHHHHHHHHhcCCH
Q psy2406 180 QIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNE 259 (464)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (464)
T Consensus 322 -------------------------------------------------------------------------------- 321 (744)
T KOG0741|consen 322 -------------------------------------------------------------------------------- 321 (744)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCC
Q psy2406 260 DEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKP 339 (464)
Q Consensus 260 ~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p 339 (464)
. ..--||.|||||++|+.|++..+...-++.|.+.||.=|||-. .-.||++|+-| +++
T Consensus 322 ---------~-SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVe--------qLNNILVIGMT----NR~ 379 (744)
T KOG0741|consen 322 ---------N-SGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVE--------QLNNILVIGMT----NRK 379 (744)
T ss_pred ---------c-CCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHH--------hhhcEEEEecc----Cch
Confidence 0 0234999999999999998765555556678889999999832 34688999876 344
Q ss_pred CCCchhhh--ccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHH-HHHHHHHHhhc
Q psy2406 340 SDLIPELQ--GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDD-GIQRLAEIAYC 406 (464)
Q Consensus 340 ~~f~PEfl--~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sde-Al~~LA~~a~~ 406 (464)
.-++.+|| +|+.+.+++..+++.-+.+|++.+ .+.++.++. ++++ -++.||...-.
T Consensus 380 DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IH--------T~rMre~~~---l~~dVdl~elA~lTKN 438 (744)
T KOG0741|consen 380 DLIDEALLRPGRLEVQMEISLPDEKGRLQILKIH--------TKRMRENNK---LSADVDLKELAALTKN 438 (744)
T ss_pred hhHHHHhcCCCceEEEEEEeCCCccCceEEEEhh--------hhhhhhcCC---CCCCcCHHHHHHHhcC
Confidence 43445555 999999999999999999998643 222333332 1222 26678877753
No 74
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=4.3e-15 Score=162.11 Aligned_cols=107 Identities=19% Similarity=0.328 Sum_probs=84.5
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.|++|||+|.++.. .+|.||+.||. .-.+++||+++ +++..+.|.++|||-
T Consensus 124 r~KViIIDEah~Ls~~-------------AaNALLKTLEE----------PP~~v~FILaT----tep~kLlpTIrSRCq 176 (700)
T PRK12323 124 RFKVYMIDEVHMLTNH-------------AFNAMLKTLEE----------PPEHVKFILAT----TDPQKIPVTVLSRCL 176 (700)
T ss_pred CceEEEEEChHhcCHH-------------HHHHHHHhhcc----------CCCCceEEEEe----CChHhhhhHHHHHHH
Confidence 5789999999999754 56799999985 23456777776 467789999999995
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 427 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l 427 (464)
++.|++++.+++.+.+. +.+..+|+ .+++++++.|++.+ +++.|...+++++.+
T Consensus 177 -~f~f~~ls~eei~~~L~-----------~Il~~Egi--~~d~eAL~~IA~~A--------~Gs~RdALsLLdQai 230 (700)
T PRK12323 177 -QFNLKQMPPGHIVSHLD-----------AILGEEGI--AHEVNALRLLAQAA--------QGSMRDALSLTDQAI 230 (700)
T ss_pred -hcccCCCChHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHH
Confidence 57999999999888774 22334455 67899999999887 578898888887755
No 75
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.61 E-value=5.5e-15 Score=165.53 Aligned_cols=110 Identities=20% Similarity=0.371 Sum_probs=77.2
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccc-cCCCCCchhhhccC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL-AKPSDLIPELQGRF 350 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~-~~p~~f~PEfl~R~ 350 (464)
.++|+||||||.+.+.+.++.+ ...+++.|++.|+.+ .+.+|++|+... +.....+|+|.+||
T Consensus 274 ~~~ILfiDEih~l~~~g~~~~~----~~~~~~~L~~~l~~g------------~i~~IgaTt~~e~~~~~~~d~al~rRf 337 (731)
T TIGR02639 274 PNAILFIDEIHTIVGAGATSGG----SMDASNLLKPALSSG------------KLRCIGSTTYEEYKNHFEKDRALSRRF 337 (731)
T ss_pred CCeEEEEecHHHHhccCCCCCc----cHHHHHHHHHHHhCC------------CeEEEEecCHHHHHHHhhhhHHHHHhC
Confidence 4789999999999876432111 112567888888743 456788875322 12235789999999
Q ss_pred CeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhcc
Q psy2406 351 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 407 (464)
Q Consensus 351 d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~ 407 (464)
. .|.+++|+.++..+|++ .....+.. .+ .+.++++|+.+++..+...
T Consensus 338 ~-~i~v~~p~~~~~~~il~----~~~~~~e~---~~--~v~i~~~al~~~~~ls~ry 384 (731)
T TIGR02639 338 Q-KIDVGEPSIEETVKILK----GLKEKYEE---FH--HVKYSDEALEAAVELSARY 384 (731)
T ss_pred c-eEEeCCCCHHHHHHHHH----HHHHHHHh---cc--CcccCHHHHHHHHHhhhcc
Confidence 7 58999999999999995 23333222 22 4689999999999988653
No 76
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.5e-14 Score=149.72 Aligned_cols=125 Identities=18% Similarity=0.257 Sum_probs=91.7
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.|++|||+|++... .++.||+.||.. ..++.||+++ +++..+.+.+.+|+
T Consensus 119 ~~kviIIDEa~~l~~~-------------a~naLLk~lEe~----------~~~~~fIl~t----~~~~~l~~tI~SRc- 170 (363)
T PRK14961 119 RFKVYLIDEVHMLSRH-------------SFNALLKTLEEP----------PQHIKFILAT----TDVEKIPKTILSRC- 170 (363)
T ss_pred CceEEEEEChhhcCHH-------------HHHHHHHHHhcC----------CCCeEEEEEc----CChHhhhHHHHhhc-
Confidence 4679999999998642 566899999852 2345566655 34556888999999
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
..+.|.||+.+++.+++. ..+..+| +.+++++++.|+..+ +++.|.+.+.+++.+.
T Consensus 171 ~~~~~~~l~~~el~~~L~-----------~~~~~~g--~~i~~~al~~ia~~s--------~G~~R~al~~l~~~~~--- 226 (363)
T PRK14961 171 LQFKLKIISEEKIFNFLK-----------YILIKES--IDTDEYALKLIAYHA--------HGSMRDALNLLEHAIN--- 226 (363)
T ss_pred eEEeCCCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 568999999999998874 2233345 478999999999887 4678999999988653
Q ss_pred cccCCCceeecHHHHHhHhCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~ 452 (464)
+. .-.||.++|.+.++.
T Consensus 227 ~~----~~~It~~~v~~~l~~ 243 (363)
T PRK14961 227 LG----KGNINIKNVTDMLGL 243 (363)
T ss_pred hc----CCCCCHHHHHHHHCC
Confidence 21 125788888776653
No 77
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=1.6e-14 Score=155.38 Aligned_cols=130 Identities=17% Similarity=0.291 Sum_probs=96.9
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.||+|||+|.+... .++.||..||. ...+++||+++ +++..+.+.+++|+
T Consensus 128 ~~KVvIIDEa~~Ls~~-------------a~naLLk~LEe----------pp~~~vfI~aT----te~~kI~~tI~SRc- 179 (507)
T PRK06645 128 KHKIFIIDEVHMLSKG-------------AFNALLKTLEE----------PPPHIIFIFAT----TEVQKIPATIISRC- 179 (507)
T ss_pred CcEEEEEEChhhcCHH-------------HHHHHHHHHhh----------cCCCEEEEEEe----CChHHhhHHHHhcc-
Confidence 5779999999998642 56789999984 23456777665 24556888999999
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
.++.|++++.+++..++. ..+..+|+ .++++|+..|++.+ ++++|.+.+.+++++.-
T Consensus 180 ~~~ef~~ls~~el~~~L~-----------~i~~~egi--~ie~eAL~~Ia~~s--------~GslR~al~~Ldkai~~-- 236 (507)
T PRK06645 180 QRYDLRRLSFEEIFKLLE-----------YITKQENL--KTDIEALRIIAYKS--------EGSARDAVSILDQAASM-- 236 (507)
T ss_pred eEEEccCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHHh--
Confidence 568999999999998884 23344564 67899999999987 57899999999987532
Q ss_pred cccCCCceeecHHHHHhHhCCCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGDLS 454 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~~~ 454 (464)
... ..-.||.++|++.++...
T Consensus 237 -~~~-~~~~It~~~V~~llg~~~ 257 (507)
T PRK06645 237 -SAK-SDNIISPQVINQMLGLVD 257 (507)
T ss_pred -hcc-CCCCcCHHHHHHHHCCCC
Confidence 111 112589999988876643
No 78
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=1.5e-14 Score=159.04 Aligned_cols=124 Identities=22% Similarity=0.363 Sum_probs=92.3
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.|++|||+|++... .++.||+.||. ...++.||+++ +++..+.|.+++|+
T Consensus 119 ~~KV~IIDEah~Ls~~-------------a~NALLKtLEE----------Pp~~v~FIL~T----t~~~kLl~TI~SRC- 170 (647)
T PRK07994 119 RFKVYLIDEVHMLSRH-------------SFNALLKTLEE----------PPEHVKFLLAT----TDPQKLPVTILSRC- 170 (647)
T ss_pred CCEEEEEechHhCCHH-------------HHHHHHHHHHc----------CCCCeEEEEec----CCccccchHHHhhh-
Confidence 5779999999999754 67799999985 23456777765 35778889999998
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
..+.|++|+.+++...+. ..+..+|+ .++++++..|++.+ +++.|...+++++.+..
T Consensus 171 ~~~~f~~Ls~~ei~~~L~-----------~il~~e~i--~~e~~aL~~Ia~~s--------~Gs~R~Al~lldqaia~-- 227 (647)
T PRK07994 171 LQFHLKALDVEQIRQQLE-----------HILQAEQI--PFEPRALQLLARAA--------DGSMRDALSLTDQAIAS-- 227 (647)
T ss_pred eEeeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHHh--
Confidence 568999999999888874 22333454 78999999999887 57899999988776532
Q ss_pred cccCCCceeecHHHHHhHhC
Q psy2406 432 FNSNNISLLVDADYVNSRLG 451 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~ 451 (464)
... .||.+.|...++
T Consensus 228 ---~~~--~it~~~v~~~lg 242 (647)
T PRK07994 228 ---GNG--QVTTDDVSAMLG 242 (647)
T ss_pred ---cCC--CcCHHHHHHHHc
Confidence 111 356666665554
No 79
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.59 E-value=1.5e-14 Score=162.14 Aligned_cols=84 Identities=25% Similarity=0.432 Sum_probs=63.8
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc--c
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--R 349 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~--R 349 (464)
.++||||||||.+++.+.. ...+ ....+++.|+.+|++.. ...++++|+++ +.+..++|++.. |
T Consensus 271 ~p~il~iDEid~l~~~r~~-~~~~-~~~~~~~~Ll~~ld~l~--------~~~~vivI~at----n~~~~ld~al~r~gR 336 (733)
T TIGR01243 271 APSIIFIDEIDAIAPKREE-VTGE-VEKRVVAQLLTLMDGLK--------GRGRVIVIGAT----NRPDALDPALRRPGR 336 (733)
T ss_pred CCcEEEeehhhhhcccccC-Ccch-HHHHHHHHHHHHhhccc--------cCCCEEEEeec----CChhhcCHHHhCchh
Confidence 4799999999999987653 1112 22357778999998632 23456777776 467789999874 9
Q ss_pred CCeEEEcCCCCHHHHHHHHH
Q psy2406 350 FPIRVELDSLSISDFTRIMT 369 (464)
Q Consensus 350 ~d~iV~f~~Lt~~el~~Il~ 369 (464)
|+..+.|..++.+++.+|++
T Consensus 337 fd~~i~i~~P~~~~R~~Il~ 356 (733)
T TIGR01243 337 FDREIVIRVPDKRARKEILK 356 (733)
T ss_pred ccEEEEeCCcCHHHHHHHHH
Confidence 99999999999999999984
No 80
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=2.9e-14 Score=154.42 Aligned_cols=125 Identities=17% Similarity=0.246 Sum_probs=93.7
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.|++|||+|++... .++.||+.||.. ..++.||+++ +++..+.+.+++|+
T Consensus 119 ~~kViIIDEa~~ls~~-------------a~naLLK~LEep----------p~~v~fIL~T----td~~kil~tI~SRc- 170 (546)
T PRK14957 119 RYKVYLIDEVHMLSKQ-------------SFNALLKTLEEP----------PEYVKFILAT----TDYHKIPVTILSRC- 170 (546)
T ss_pred CcEEEEEechhhccHH-------------HHHHHHHHHhcC----------CCCceEEEEE----CChhhhhhhHHHhe-
Confidence 5779999999999743 677999999852 2345666655 34666778899999
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
.++.|++|+.+++.+.+. ..+..+|+ .++++++..|++.+ +++.|.+.+.+++++.-
T Consensus 171 ~~~~f~~Ls~~eI~~~L~-----------~il~~egi--~~e~~Al~~Ia~~s--------~GdlR~alnlLek~i~~-- 227 (546)
T PRK14957 171 IQLHLKHISQADIKDQLK-----------IILAKENI--NSDEQSLEYIAYHA--------KGSLRDALSLLDQAISF-- 227 (546)
T ss_pred eeEEeCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHHh--
Confidence 558999999999888774 23334564 78999999999888 57899999999987632
Q ss_pred cccCCCceeecHHHHHhHhCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~ 452 (464)
. +. .||.++|++.++.
T Consensus 228 -~--~~--~It~~~V~~~l~~ 243 (546)
T PRK14957 228 -C--GG--ELKQAQIKQMLGI 243 (546)
T ss_pred -c--cC--CCCHHHHHHHHcc
Confidence 1 11 4777777776654
No 81
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=2.8e-14 Score=152.70 Aligned_cols=126 Identities=17% Similarity=0.291 Sum_probs=95.3
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.|++|||+|.+... .++.||+.||.. ..++.||+++ +++..+.+.+++|+-
T Consensus 116 ~~KVvIIDEah~Ls~~-------------A~NaLLK~LEeP----------p~~v~fIlat----te~~Kl~~tI~SRc~ 168 (491)
T PRK14964 116 KFKVYIIDEVHMLSNS-------------AFNALLKTLEEP----------APHVKFILAT----TEVKKIPVTIISRCQ 168 (491)
T ss_pred CceEEEEeChHhCCHH-------------HHHHHHHHHhCC----------CCCeEEEEEe----CChHHHHHHHHHhhe
Confidence 5779999999999643 567999999852 2345677665 355568889999995
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
++.|.+++.+++...+. ..+..+|+ .++++++..|++.+ +++.|.+.+.+++.+.
T Consensus 169 -~~~f~~l~~~el~~~L~-----------~ia~~Egi--~i~~eAL~lIa~~s--------~GslR~alslLdqli~--- 223 (491)
T PRK14964 169 -RFDLQKIPTDKLVEHLV-----------DIAKKENI--EHDEESLKLIAENS--------SGSMRNALFLLEQAAI--- 223 (491)
T ss_pred -eeecccccHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 58999999999888874 23344565 78999999999988 5789999999988763
Q ss_pred cccCCCceeecHHHHHhHhCCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGDL 453 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~~ 453 (464)
|.. . .||.++|++.++..
T Consensus 224 y~~---~-~It~e~V~~llg~~ 241 (491)
T PRK14964 224 YSN---N-KISEKSVRDLLGCV 241 (491)
T ss_pred hcC---C-CCCHHHHHHHHccC
Confidence 211 1 58888888876543
No 82
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=3.4e-14 Score=160.26 Aligned_cols=125 Identities=18% Similarity=0.261 Sum_probs=93.0
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.|+||||+|+++.. .++.||++||. ...+++||+++ +++..+.+.+++|+-
T Consensus 120 ~~KV~IIDEad~lt~~-------------a~NaLLK~LEE----------pP~~~~fIl~t----t~~~kLl~TIrSRc~ 172 (824)
T PRK07764 120 RYKIFIIDEAHMVTPQ-------------GFNALLKIVEE----------PPEHLKFIFAT----TEPDKVIGTIRSRTH 172 (824)
T ss_pred CceEEEEechhhcCHH-------------HHHHHHHHHhC----------CCCCeEEEEEe----CChhhhhHHHHhhee
Confidence 5789999999999753 56799999985 23456777765 345568889999995
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
++.|.+|+.+++.++|. +.+..+|+ .++++++.+|++.+ +++.|.+.+.|++++..
T Consensus 173 -~v~F~~l~~~~l~~~L~-----------~il~~EGv--~id~eal~lLa~~s--------gGdlR~Al~eLEKLia~-- 228 (824)
T PRK07764 173 -HYPFRLVPPEVMRGYLE-----------RICAQEGV--PVEPGVLPLVIRAG--------GGSVRDSLSVLDQLLAG-- 228 (824)
T ss_pred -EEEeeCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHhh--
Confidence 57999999999888874 33445565 67999999999888 46789999999987631
Q ss_pred cccCCCceeecHHHHHhHhC
Q psy2406 432 FNSNNISLLVDADYVNSRLG 451 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~ 451 (464)
.. .-.||.+++.+.++
T Consensus 229 -~~---~~~IT~e~V~allg 244 (824)
T PRK07764 229 -AG---PEGVTYERAVALLG 244 (824)
T ss_pred -cC---CCCCCHHHHHHHhc
Confidence 11 11366666655543
No 83
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=4.8e-14 Score=153.89 Aligned_cols=126 Identities=20% Similarity=0.296 Sum_probs=95.5
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+-|++|||+|.+... .++.||+.||. ...+++||+++ +++..+.|.+++|+
T Consensus 118 ~~KVvIIDEah~Lt~~-------------A~NALLK~LEE----------pp~~~~fIL~t----te~~kll~TI~SRc- 169 (584)
T PRK14952 118 RYRIFIVDEAHMVTTA-------------GFNALLKIVEE----------PPEHLIFIFAT----TEPEKVLPTIRSRT- 169 (584)
T ss_pred CceEEEEECCCcCCHH-------------HHHHHHHHHhc----------CCCCeEEEEEe----CChHhhHHHHHHhc-
Confidence 5779999999999743 67799999985 33466788776 35667889999998
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
.++.|.+++.+++.+.+. ..+..+|+ .++++++..|++.+ +++.|.+.+.+++++.
T Consensus 170 ~~~~F~~l~~~~i~~~L~-----------~i~~~egi--~i~~~al~~Ia~~s--------~GdlR~aln~Ldql~~--- 225 (584)
T PRK14952 170 HHYPFRLLPPRTMRALIA-----------RICEQEGV--VVDDAVYPLVIRAG--------GGSPRDTLSVLDQLLA--- 225 (584)
T ss_pred eEEEeeCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHh---
Confidence 468999999999887773 33444565 77899999999887 5789999999998763
Q ss_pred cccCCCceeecHHHHHhHhCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~ 452 (464)
|.. .-.||.+.+...++.
T Consensus 226 ~~~---~~~It~~~v~~llg~ 243 (584)
T PRK14952 226 GAA---DTHVTYQRALGLLGA 243 (584)
T ss_pred ccC---CCCcCHHHHHHHHCC
Confidence 211 124777777766554
No 84
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=4.8e-14 Score=154.59 Aligned_cols=125 Identities=18% Similarity=0.285 Sum_probs=93.8
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.|++|||+|.+... .++.||+.||. ...++.||+++ +++..+.+.+++|+
T Consensus 124 ~~KV~IIDEvh~Ls~~-------------a~NaLLKtLEE----------PP~~~~fIL~T----td~~kil~TIlSRc- 175 (618)
T PRK14951 124 RFKVFMIDEVHMLTNT-------------AFNAMLKTLEE----------PPEYLKFVLAT----TDPQKVPVTVLSRC- 175 (618)
T ss_pred CceEEEEEChhhCCHH-------------HHHHHHHhccc----------CCCCeEEEEEE----CCchhhhHHHHHhc-
Confidence 4779999999999754 46799999985 23455677665 35667888899999
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
.++.|++|+.+++.+.+. ..+..+|+ .+++++++.|++.+ .++.|.+.+.+++.+.
T Consensus 176 ~~~~f~~Ls~eei~~~L~-----------~i~~~egi--~ie~~AL~~La~~s--------~GslR~al~lLdq~ia--- 231 (618)
T PRK14951 176 LQFNLRPMAPETVLEHLT-----------QVLAAENV--PAEPQALRLLARAA--------RGSMRDALSLTDQAIA--- 231 (618)
T ss_pred eeeecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 558999999999888874 23344565 67899999999987 5789999888877653
Q ss_pred cccCCCceeecHHHHHhHhCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~ 452 (464)
+. .-.||.+.|++.++.
T Consensus 232 ~~----~~~It~~~V~~~Lg~ 248 (618)
T PRK14951 232 FG----SGQLQEAAVRQMLGS 248 (618)
T ss_pred hc----CCCcCHHHHHHHHcC
Confidence 21 125788888777664
No 85
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=5.2e-14 Score=154.94 Aligned_cols=126 Identities=16% Similarity=0.305 Sum_probs=94.6
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.||+|||+|++... .++.||+.||.. -.++.||+++ +++..+.+.+++||
T Consensus 119 k~KVIIIDEad~Ls~~-------------A~NALLKtLEEP----------p~~v~fILaT----td~~kL~~TIrSRC- 170 (709)
T PRK08691 119 KYKVYIIDEVHMLSKS-------------AFNAMLKTLEEP----------PEHVKFILAT----TDPHKVPVTVLSRC- 170 (709)
T ss_pred CcEEEEEECccccCHH-------------HHHHHHHHHHhC----------CCCcEEEEEe----CCccccchHHHHHH-
Confidence 5679999999988642 567899999842 2345666665 35667888999999
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
..+.|++++.+++...|. ..+..+|+ .++++++..|++.+ .++.|.+.+.+++.+.
T Consensus 171 ~~f~f~~Ls~eeI~~~L~-----------~Il~kEgi--~id~eAL~~Ia~~A--------~GslRdAlnLLDqaia--- 226 (709)
T PRK08691 171 LQFVLRNMTAQQVADHLA-----------HVLDSEKI--AYEPPALQLLGRAA--------AGSMRDALSLLDQAIA--- 226 (709)
T ss_pred hhhhcCCCCHHHHHHHHH-----------HHHHHcCC--CcCHHHHHHHHHHh--------CCCHHHHHHHHHHHHH---
Confidence 457999999999988874 33444565 78999999999998 5789999999988764
Q ss_pred cccCCCceeecHHHHHhHhCCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGDL 453 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~~ 453 (464)
|. .+ .|+.++|...++..
T Consensus 227 ~g--~g--~It~e~V~~lLG~~ 244 (709)
T PRK08691 227 LG--SG--KVAENDVRQMIGAV 244 (709)
T ss_pred hc--CC--CcCHHHHHHHHccc
Confidence 21 12 47788887776654
No 86
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.56 E-value=2.9e-14 Score=161.90 Aligned_cols=109 Identities=20% Similarity=0.255 Sum_probs=76.4
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCC-CCCchhhhccC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKP-SDLIPELQGRF 350 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p-~~f~PEfl~R~ 350 (464)
.++|+||||||.+++.+.+.+..| ..+.|++.|+.+ .+.+|+||+...-++ ...+|+|.+||
T Consensus 280 ~~~ILfIDEih~l~~~g~~~~~~d-----~~n~Lkp~l~~G------------~l~~IgaTT~~e~~~~~~~d~AL~rRf 342 (852)
T TIGR03345 280 QPIILFIDEAHTLIGAGGQAGQGD-----AANLLKPALARG------------ELRTIAATTWAEYKKYFEKDPALTRRF 342 (852)
T ss_pred CCeEEEEeChHHhccCCCcccccc-----HHHHhhHHhhCC------------CeEEEEecCHHHHhhhhhccHHHHHhC
Confidence 578999999999987654311222 234788888754 357788875322223 35789999999
Q ss_pred CeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhcc
Q psy2406 351 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 407 (464)
Q Consensus 351 d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~ 407 (464)
. +|.+++|+.++..+|+. .+.+.+.. .+ .+.++++|+.+++..+...
T Consensus 343 ~-~i~v~eps~~~~~~iL~----~~~~~~e~---~~--~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 343 Q-VVKVEEPDEETAIRMLR----GLAPVLEK---HH--GVLILDEAVVAAVELSHRY 389 (852)
T ss_pred e-EEEeCCCCHHHHHHHHH----HHHHhhhh---cC--CCeeCHHHHHHHHHHcccc
Confidence 6 68999999999999984 23333322 13 4689999999999988543
No 87
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.5e-13 Score=149.73 Aligned_cols=126 Identities=21% Similarity=0.414 Sum_probs=94.9
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+-|++|||+|.+... .++.||+.||.. ..+++||+++ +++..+.|.+++|+.
T Consensus 119 ~~kViIIDE~~~Lt~~-------------a~naLLKtLEep----------p~~~ifIlat----t~~~ki~~tI~SRc~ 171 (559)
T PRK05563 119 KYKVYIIDEVHMLSTG-------------AFNALLKTLEEP----------PAHVIFILAT----TEPHKIPATILSRCQ 171 (559)
T ss_pred CeEEEEEECcccCCHH-------------HHHHHHHHhcCC----------CCCeEEEEEe----CChhhCcHHHHhHhe
Confidence 5789999999999643 567999999852 3456777775 357778999999996
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
.+.|.+++.+++...+. ..+..+|+ .++++++..||+.+ .++.|.+.+.+++++.
T Consensus 172 -~~~f~~~~~~ei~~~L~-----------~i~~~egi--~i~~~al~~ia~~s--------~G~~R~al~~Ldq~~~--- 226 (559)
T PRK05563 172 -RFDFKRISVEDIVERLK-----------YILDKEGI--EYEDEALRLIARAA--------EGGMRDALSILDQAIS--- 226 (559)
T ss_pred -EEecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 57999999999888874 22334565 67899999999887 5789999999988754
Q ss_pred cccCCCceeecHHHHHhHhCCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGDL 453 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~~ 453 (464)
|. +. .||.++|.+.++..
T Consensus 227 ~~--~~--~It~~~V~~vlg~~ 244 (559)
T PRK05563 227 FG--DG--KVTYEDALEVTGSV 244 (559)
T ss_pred hc--cC--CCCHHHHHHHhCCC
Confidence 22 12 47777777665543
No 88
>KOG0730|consensus
Probab=99.55 E-value=5.7e-14 Score=151.65 Aligned_cols=106 Identities=24% Similarity=0.411 Sum_probs=80.9
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhh-ccC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ-GRF 350 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl-~R~ 350 (464)
.|+||||||||.+++++..... +.. .+...|+.+|||-. ..+++++|+++ ++|..+.|.+. +||
T Consensus 278 ~psii~IdEld~l~p~r~~~~~--~e~-Rv~sqlltL~dg~~--------~~~~vivl~at----nrp~sld~alRRgRf 342 (693)
T KOG0730|consen 278 VPSIIFIDELDALCPKREGADD--VES-RVVSQLLTLLDGLK--------PDAKVIVLAAT----NRPDSLDPALRRGRF 342 (693)
T ss_pred CCeeEeHHhHhhhCCcccccch--HHH-HHHHHHHHHHhhCc--------CcCcEEEEEec----CCccccChhhhcCCC
Confidence 4899999999999998775212 233 46668999999732 35778888887 68999999999 699
Q ss_pred CeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhc
Q psy2406 351 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 406 (464)
Q Consensus 351 d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~ 406 (464)
|..+.+.-++..+...|++. + .. ..++. ++..+..+|..+..
T Consensus 343 d~ev~IgiP~~~~RldIl~~----l-------~k--~~~~~-~~~~l~~iA~~thG 384 (693)
T KOG0730|consen 343 DREVEIGIPGSDGRLDILRV----L-------TK--KMNLL-SDVDLEDIAVSTHG 384 (693)
T ss_pred cceeeecCCCchhHHHHHHH----H-------HH--hcCCc-chhhHHHHHHHccc
Confidence 99999999999999999842 2 22 22233 67788888888765
No 89
>KOG0732|consensus
Probab=99.55 E-value=3.6e-14 Score=160.35 Aligned_cols=125 Identities=22% Similarity=0.294 Sum_probs=95.7
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhh--hcc
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPEL--QGR 349 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEf--l~R 349 (464)
+|+|||+||||-+++-+.. -.+-.+..+...||.+|||- -.++.+++|+|| ++|..++|++ -+|
T Consensus 363 qPSIIffdeIdGlapvrSs--kqEqih~SIvSTLLaLmdGl--------dsRgqVvvigAT----nRpda~dpaLRRPgr 428 (1080)
T KOG0732|consen 363 QPSIIFFDEIDGLAPVRSS--KQEQIHASIVSTLLALMDGL--------DSRGQVVVIGAT----NRPDAIDPALRRPGR 428 (1080)
T ss_pred CceEEeccccccccccccc--hHHHhhhhHHHHHHHhccCC--------CCCCceEEEccc----CCccccchhhcCCcc
Confidence 6999999999999998753 22333334666899999983 245677888887 5899999999 499
Q ss_pred CCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHH
Q psy2406 350 FPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 429 (464)
Q Consensus 350 ~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~ 429 (464)
||..+.|..++.+...+|+.+ ..+...=.++...+.+||+..-. ||...|+.++......
T Consensus 429 fdref~f~lp~~~ar~~Il~I-------------htrkw~~~i~~~l~~~la~~t~g-------y~gaDlkaLCTeAal~ 488 (1080)
T KOG0732|consen 429 FDREFYFPLPDVDARAKILDI-------------HTRKWEPPISRELLLWLAEETSG-------YGGADLKALCTEAALI 488 (1080)
T ss_pred cceeEeeeCCchHHHHHHHHH-------------hccCCCCCCCHHHHHHHHHhccc-------cchHHHHHHHHHHhhh
Confidence 999999999999999999953 23344457788899999998864 4555588888765444
Q ss_pred H
Q psy2406 430 V 430 (464)
Q Consensus 430 ~ 430 (464)
.
T Consensus 489 ~ 489 (1080)
T KOG0732|consen 489 A 489 (1080)
T ss_pred h
Confidence 3
No 90
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.54 E-value=2.3e-13 Score=149.84 Aligned_cols=143 Identities=17% Similarity=0.276 Sum_probs=98.3
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeee------------------ecCceeEeeccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI------------------IKTDHILFIASGA 333 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~------------------i~Tsnil~I~ag~ 333 (464)
..+||||||++.+.+. .|+.|+.+|+...+.+-... ....++++|++++
T Consensus 265 sgGvL~LDEi~~Ld~~-------------~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt 331 (615)
T TIGR02903 265 HGGVLFIDEIGELDPL-------------LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATT 331 (615)
T ss_pred CCCeEEEeccccCCHH-------------HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEecc
Confidence 5789999999988654 67799999986654321110 0123456666653
Q ss_pred ccccCCCCCchhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCc
Q psy2406 334 FHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTEN 413 (464)
Q Consensus 334 f~~~~p~~f~PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~ 413 (464)
.++..+.|+|++||.. +.|.||+.+++..|+.. . +...+ +.+++++++.|++.+.
T Consensus 332 ---~~~~~l~~aLrSR~~~-i~~~pls~edi~~Il~~----~-------a~~~~--v~ls~eal~~L~~ys~-------- 386 (615)
T TIGR02903 332 ---RDPEEINPALRSRCAE-VFFEPLTPEDIALIVLN----A-------AEKIN--VHLAAGVEELIARYTI-------- 386 (615)
T ss_pred ---ccccccCHHHHhceeE-EEeCCCCHHHHHHHHHH----H-------HHHcC--CCCCHHHHHHHHHCCC--------
Confidence 3566789999999975 68999999999999852 1 22223 4688999999987653
Q ss_pred cChhHHHHHHHHHHHHHhccc-----CCCceeecHHHHHhHhCCC
Q psy2406 414 IGARRLYTAMEKLLEEVSFNS-----NNISLLVDADYVNSRLGDL 453 (464)
Q Consensus 414 ~GAR~L~r~IE~~l~~~l~~~-----~~~~v~I~~e~v~~~~~~~ 453 (464)
++|...++++......++.. ....+.|+.++|+++++..
T Consensus 387 -~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 387 -EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 45777778876654332221 1123789999999998754
No 91
>PLN03025 replication factor C subunit; Provisional
Probab=99.54 E-value=5.3e-14 Score=142.85 Aligned_cols=123 Identities=20% Similarity=0.275 Sum_probs=86.3
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.||+|||+|.+... .|+.|+..||-. ..+..||+++ +.+..+.|++.+|+.
T Consensus 99 ~~kviiiDE~d~lt~~-------------aq~aL~~~lE~~----------~~~t~~il~~----n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 99 RHKIVILDEADSMTSG-------------AQQALRRTMEIY----------SNTTRFALAC----NTSSKIIEPIQSRCA 151 (319)
T ss_pred CeEEEEEechhhcCHH-------------HHHHHHHHHhcc----------cCCceEEEEe----CCccccchhHHHhhh
Confidence 4679999999999743 567899988731 1112334443 244568899999995
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
++.|++|+.+++...+. ..+..+|+ .++++++++|++.+ +++.|.+.+.+|....
T Consensus 152 -~i~f~~l~~~~l~~~L~-----------~i~~~egi--~i~~~~l~~i~~~~--------~gDlR~aln~Lq~~~~--- 206 (319)
T PLN03025 152 -IVRFSRLSDQEILGRLM-----------KVVEAEKV--PYVPEGLEAIIFTA--------DGDMRQALNNLQATHS--- 206 (319)
T ss_pred -cccCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHh---
Confidence 57999999999888874 23444566 67899999999887 5788999988884321
Q ss_pred cccCCCceeecHHHHHhHhC
Q psy2406 432 FNSNNISLLVDADYVNSRLG 451 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~ 451 (464)
. . -.||.++|.+..+
T Consensus 207 --~--~-~~i~~~~v~~~~~ 221 (319)
T PLN03025 207 --G--F-GFVNQENVFKVCD 221 (319)
T ss_pred --c--C-CCCCHHHHHHHcC
Confidence 1 1 1467777765433
No 92
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.6e-13 Score=150.18 Aligned_cols=125 Identities=18% Similarity=0.267 Sum_probs=91.5
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.||+|||+|++... .++.||+.||.. ..+++||+++ +++..+.+.+++|+-
T Consensus 119 ~~kVIIIDEad~Lt~~-------------a~naLLk~LEEP----------~~~~ifILaT----t~~~kll~TI~SRcq 171 (624)
T PRK14959 119 RYKVFIIDEAHMLTRE-------------AFNALLKTLEEP----------PARVTFVLAT----TEPHKFPVTIVSRCQ 171 (624)
T ss_pred CceEEEEEChHhCCHH-------------HHHHHHHHhhcc----------CCCEEEEEec----CChhhhhHHHHhhhh
Confidence 5679999999999743 567999999842 2345666665 356677888999996
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
++.|++|+.+++..++. +.+..+++ .+++++++.|++.+ .+++|.+.+.+++++.
T Consensus 172 -~i~F~pLs~~eL~~~L~-----------~il~~egi--~id~eal~lIA~~s--------~GdlR~Al~lLeqll~--- 226 (624)
T PRK14959 172 -HFTFTRLSEAGLEAHLT-----------KVLGREGV--DYDPAAVRLIARRA--------AGSVRDSMSLLGQVLA--- 226 (624)
T ss_pred -ccccCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 57999999999998884 22334454 68999999999988 4679999999887642
Q ss_pred cccCCCceeecHHHHHhHhCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~ 452 (464)
.. . -.||.++|.+.++.
T Consensus 227 --~g-~-~~It~d~V~~~lg~ 243 (624)
T PRK14959 227 --LG-E-SRLTIDGARGVLGL 243 (624)
T ss_pred --hc-C-CCcCHHHHHHHhCC
Confidence 11 1 14777777666543
No 93
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.3e-13 Score=149.26 Aligned_cols=125 Identities=18% Similarity=0.306 Sum_probs=93.3
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.|++|||+|++... .++.||+.||.. ..++.||+++ +++..+.+.+++|+
T Consensus 119 ~~kVvIIDEad~ls~~-------------a~naLLK~LEep----------p~~~~fIL~t----~d~~kil~tI~SRc- 170 (527)
T PRK14969 119 RFKVYIIDEVHMLSKS-------------AFNAMLKTLEEP----------PEHVKFILAT----TDPQKIPVTVLSRC- 170 (527)
T ss_pred CceEEEEcCcccCCHH-------------HHHHHHHHHhCC----------CCCEEEEEEe----CChhhCchhHHHHH-
Confidence 5679999999999743 567999999852 2455677765 35677888899999
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
.++.|++++.+++.+.+. +.+..+|+ .++++++..|++.+ +++.|.+.+.+++.+.
T Consensus 171 ~~~~f~~l~~~~i~~~L~-----------~il~~egi--~~~~~al~~la~~s--------~Gslr~al~lldqai~--- 226 (527)
T PRK14969 171 LQFNLKQMPPPLIVSHLQ-----------HILEQENI--PFDATALQLLARAA--------AGSMRDALSLLDQAIA--- 226 (527)
T ss_pred HHHhcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 558999999999887763 23444564 68999999999887 4678999999988764
Q ss_pred cccCCCceeecHHHHHhHhCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~ 452 (464)
+. . -.|+.++|...++.
T Consensus 227 ~~---~-~~I~~~~v~~~~~~ 243 (527)
T PRK14969 227 YG---G-GTVNESEVRAMLGA 243 (527)
T ss_pred hc---C-CCcCHHHHHHHHCC
Confidence 21 1 24677777776653
No 94
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.8e-13 Score=145.87 Aligned_cols=125 Identities=23% Similarity=0.362 Sum_probs=93.5
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.||+|||+|.+... .++.||..|+.. ..+++||+++ +.+..+.|.+.+|+.
T Consensus 116 ~~kVVIIDEad~ls~~-------------a~naLLk~LEep----------~~~t~~Il~t----~~~~kl~~~I~SRc~ 168 (504)
T PRK14963 116 GRKVYILDEAHMMSKS-------------AFNALLKTLEEP----------PEHVIFILAT----TEPEKMPPTILSRTQ 168 (504)
T ss_pred CCeEEEEECccccCHH-------------HHHHHHHHHHhC----------CCCEEEEEEc----CChhhCChHHhcceE
Confidence 5679999999987532 567899988752 2344555554 356678899999996
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
.+.|.+|+.+++...+. ..+..+|+ .++++++.+|++.+ +++.|.+.+.+++++.
T Consensus 169 -~~~f~~ls~~el~~~L~-----------~i~~~egi--~i~~~Al~~ia~~s--------~GdlR~aln~Lekl~~--- 223 (504)
T PRK14963 169 -HFRFRRLTEEEIAGKLR-----------RLLEAEGR--EAEPEALQLVARLA--------DGAMRDAESLLERLLA--- 223 (504)
T ss_pred -EEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHh---
Confidence 58999999999988874 23444565 67999999999988 5789999999998753
Q ss_pred cccCCCceeecHHHHHhHhCCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGDL 453 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~~ 453 (464)
+ .. .||.++|.+.++..
T Consensus 224 ~---~~--~It~~~V~~~l~~~ 240 (504)
T PRK14963 224 L---GT--PVTRKQVEEALGLP 240 (504)
T ss_pred c---CC--CCCHHHHHHHHCCC
Confidence 2 11 47888888776543
No 95
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=2e-13 Score=149.27 Aligned_cols=125 Identities=20% Similarity=0.311 Sum_probs=94.0
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.|++|||+|.++.. .++.||+.||. ...+++||+++ +++..+.+.+++|+-
T Consensus 119 ~~KVvIIdev~~Lt~~-------------a~naLLk~LEe----------pp~~~~fIl~t----~~~~kl~~tI~SRc~ 171 (576)
T PRK14965 119 RYKIFIIDEVHMLSTN-------------AFNALLKTLEE----------PPPHVKFIFAT----TEPHKVPITILSRCQ 171 (576)
T ss_pred CceEEEEEChhhCCHH-------------HHHHHHHHHHc----------CCCCeEEEEEe----CChhhhhHHHHHhhh
Confidence 5779999999999743 56799999985 23456777765 366778899999996
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
++.|++++.+++...+. ..+..+|+ .++++++..|++.+ +++.|.+.+.+++++.-
T Consensus 172 -~~~f~~l~~~~i~~~L~-----------~i~~~egi--~i~~~al~~la~~a--------~G~lr~al~~Ldqliay-- 227 (576)
T PRK14965 172 -RFDFRRIPLQKIVDRLR-----------YIADQEGI--SISDAALALVARKG--------DGSMRDSLSTLDQVLAF-- 227 (576)
T ss_pred -hhhcCCCCHHHHHHHHH-----------HHHHHhCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHHh--
Confidence 57999999999887763 23344565 78999999999988 57899999999887642
Q ss_pred cccCCCceeecHHHHHhHhCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~ 452 (464)
.- . .||.++|...++.
T Consensus 228 -~g--~--~It~edV~~llG~ 243 (576)
T PRK14965 228 -CG--D--AVGDDDVAELLGV 243 (576)
T ss_pred -cc--C--CCCHHHHHHHhCC
Confidence 11 1 3677777666543
No 96
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.50 E-value=6.3e-13 Score=134.05 Aligned_cols=124 Identities=20% Similarity=0.349 Sum_probs=86.5
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
++.||+|||+|.+... .++.|+.+|+... .+..+|++++ ++..+.+.+.+|+.
T Consensus 125 ~~~vlilDe~~~l~~~-------------~~~~L~~~le~~~----------~~~~~Il~~~----~~~~~~~~L~sr~~ 177 (337)
T PRK12402 125 DYKTILLDNAEALRED-------------AQQALRRIMEQYS----------RTCRFIIATR----QPSKLIPPIRSRCL 177 (337)
T ss_pred CCcEEEEeCcccCCHH-------------HHHHHHHHHHhcc----------CCCeEEEEeC----ChhhCchhhcCCce
Confidence 4679999999988532 4557888877421 1223444432 45567788999985
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
.+.|.+++.+++..++. +.+..+|+ .+++++++.|++.+ .++.|.+.+.+++...
T Consensus 178 -~v~~~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~al~~l~~~~--------~gdlr~l~~~l~~~~~--- 232 (337)
T PRK12402 178 -PLFFRAPTDDELVDVLE-----------SIAEAEGV--DYDDDGLELIAYYA--------GGDLRKAILTLQTAAL--- 232 (337)
T ss_pred -EEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 57999999999988874 22344565 58999999999887 3678888887775431
Q ss_pred cccCCCceeecHHHHHhHhCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~ 452 (464)
. .. .||.++|++.++.
T Consensus 233 ---~-~~-~It~~~v~~~~~~ 248 (337)
T PRK12402 233 ---A-AG-EITMEAAYEALGD 248 (337)
T ss_pred ---c-CC-CCCHHHHHHHhCC
Confidence 1 12 5888888887664
No 97
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.50 E-value=1.2e-12 Score=135.52 Aligned_cols=145 Identities=17% Similarity=0.096 Sum_probs=89.8
Q ss_pred cCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccC
Q psy2406 271 EQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF 350 (464)
Q Consensus 271 ~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~ 350 (464)
..+.||+|||+|.+...... .....|+..++.. ..+++.+|+.|+. ..-+..+.|.+.+|+
T Consensus 137 ~~~~viviDE~d~l~~~~~~---------~~l~~l~~~~~~~---------~~~~v~vI~i~~~-~~~~~~l~~~~~s~~ 197 (394)
T PRK00411 137 DRVLIVALDDINYLFEKEGN---------DVLYSLLRAHEEY---------PGARIGVIGISSD-LTFLYILDPRVKSVF 197 (394)
T ss_pred CCEEEEEECCHhHhhccCCc---------hHHHHHHHhhhcc---------CCCeEEEEEEECC-cchhhhcCHHHHhcC
Confidence 35689999999999722111 1233444444321 1236667776531 111223677787887
Q ss_pred -CeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHH
Q psy2406 351 -PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 429 (464)
Q Consensus 351 -d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~ 429 (464)
...|.|+|++.+++..|+.. .+ ..-+ ..-.+++++++.+++.+... .+++|.+..++......
T Consensus 198 ~~~~i~f~py~~~e~~~il~~----r~---~~~~----~~~~~~~~~l~~i~~~~~~~-----~Gd~r~a~~ll~~a~~~ 261 (394)
T PRK00411 198 RPEEIYFPPYTADEIFDILKD----RV---EEGF----YPGVVDDEVLDLIADLTARE-----HGDARVAIDLLRRAGLI 261 (394)
T ss_pred CcceeecCCCCHHHHHHHHHH----HH---Hhhc----ccCCCCHhHHHHHHHHHHHh-----cCcHHHHHHHHHHHHHH
Confidence 35689999999999999852 11 1111 12258999999999988653 47789888888765543
Q ss_pred HhcccCCCceeecHHHHHhHhCCC
Q psy2406 430 VSFNSNNISLLVDADYVNSRLGDL 453 (464)
Q Consensus 430 ~l~~~~~~~v~I~~e~v~~~~~~~ 453 (464)
...+ +.-.||.++|+.+....
T Consensus 262 a~~~---~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 262 AERE---GSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHc---CCCCcCHHHHHHHHHHH
Confidence 3211 12368888888776543
No 98
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.49 E-value=2.5e-12 Score=131.61 Aligned_cols=145 Identities=17% Similarity=0.103 Sum_probs=89.4
Q ss_pred cCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccC
Q psy2406 271 EQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF 350 (464)
Q Consensus 271 ~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~ 350 (464)
.++.||+|||+|.+..... .+...|+.+.+- ......++.+|+.++- ..-+..+.|.+.+||
T Consensus 128 ~~~~vlvIDE~d~L~~~~~----------~~L~~l~~~~~~-------~~~~~~~v~lI~i~n~-~~~~~~l~~~~~s~~ 189 (365)
T TIGR02928 128 GDSLIIVLDEIDYLVGDDD----------DLLYQLSRARSN-------GDLDNAKVGVIGISND-LKFRENLDPRVKSSL 189 (365)
T ss_pred CCeEEEEECchhhhccCCc----------HHHHhHhccccc-------cCCCCCeEEEEEEECC-cchHhhcCHHHhccC
Confidence 3577999999999973211 122233333111 1123356777776531 111235778888888
Q ss_pred C-eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHH
Q psy2406 351 P-IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 429 (464)
Q Consensus 351 d-~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~ 429 (464)
. ..|.|+|++.+++..|+.. .++ ..+ ....+++++++++++.+... .+.+|.+..++......
T Consensus 190 ~~~~i~f~p~~~~e~~~il~~----r~~---~~~----~~~~~~~~~l~~i~~~~~~~-----~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 190 CEEEIIFPPYDAEELRDILEN----RAE---KAF----YDGVLDDGVIPLCAALAAQE-----HGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcceeeeCCCCHHHHHHHHHH----HHH---hhc----cCCCCChhHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHH
Confidence 5 5689999999999999952 111 001 12358899999998877543 57889988888876653
Q ss_pred HhcccCCCceeecHHHHHhHhCC
Q psy2406 430 VSFNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 430 ~l~~~~~~~v~I~~e~v~~~~~~ 452 (464)
...+ +.-.||.++|+++...
T Consensus 254 a~~~---~~~~it~~~v~~a~~~ 273 (365)
T TIGR02928 254 AERE---GAERVTEDHVEKAQEK 273 (365)
T ss_pred HHHc---CCCCCCHHHHHHHHHH
Confidence 3211 1235888888776543
No 99
>PRK06893 DNA replication initiation factor; Validated
Probab=99.49 E-value=2.4e-13 Score=132.01 Aligned_cols=133 Identities=17% Similarity=0.279 Sum_probs=87.7
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCC---Cchhhhc
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD---LIPELQG 348 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~---f~PEfl~ 348 (464)
...+|+||||+.+..... .+..|+.+++... .....++|.|++ ..|.. ..|.+.+
T Consensus 91 ~~dlLilDDi~~~~~~~~-----------~~~~l~~l~n~~~--------~~~~~illits~---~~p~~l~~~~~~L~s 148 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEE-----------WELAIFDLFNRIK--------EQGKTLLLISAD---CSPHALSIKLPDLAS 148 (229)
T ss_pred cCCEEEEeChhhhcCChH-----------HHHHHHHHHHHHH--------HcCCcEEEEeCC---CChHHccccchhHHH
Confidence 467999999999864321 3346666665211 111222333332 23332 3489999
Q ss_pred cCC--eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHH
Q psy2406 349 RFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 426 (464)
Q Consensus 349 R~d--~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~ 426 (464)
|+. .++.+++|+.+++.+|++. .+..++ +.++++++++|++++ ..+.|.|..+++++
T Consensus 149 Rl~~g~~~~l~~pd~e~~~~iL~~-----------~a~~~~--l~l~~~v~~~L~~~~--------~~d~r~l~~~l~~l 207 (229)
T PRK06893 149 RLTWGEIYQLNDLTDEQKIIVLQR-----------NAYQRG--IELSDEVANFLLKRL--------DRDMHTLFDALDLL 207 (229)
T ss_pred HHhcCCeeeCCCCCHHHHHHHHHH-----------HHHHcC--CCCCHHHHHHHHHhc--------cCCHHHHHHHHHHH
Confidence 884 5789999999999999852 222334 588999999999998 46899999999986
Q ss_pred HHHHhcccCCCceeecHHHHHhHhC
Q psy2406 427 LEEVSFNSNNISLLVDADYVNSRLG 451 (464)
Q Consensus 427 l~~~l~~~~~~~v~I~~e~v~~~~~ 451 (464)
-...+ ... -.||.+.+++.++
T Consensus 208 ~~~~~---~~~-~~it~~~v~~~L~ 228 (229)
T PRK06893 208 DKASL---QAQ-RKLTIPFVKEILG 228 (229)
T ss_pred HHHHH---hcC-CCCCHHHHHHHhc
Confidence 43222 111 2588888887654
No 100
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=8.3e-13 Score=143.98 Aligned_cols=124 Identities=17% Similarity=0.353 Sum_probs=92.3
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
++.|++|||+|.+... .++.||+.||. ...+++||+++ +++..+.|.+++|+-
T Consensus 119 ~~KVvIIDEa~~Ls~~-------------a~naLLK~LEe----------pp~~~vfI~~t----te~~kL~~tI~SRc~ 171 (563)
T PRK06647 119 RYRVYIIDEVHMLSNS-------------AFNALLKTIEE----------PPPYIVFIFAT----TEVHKLPATIKSRCQ 171 (563)
T ss_pred CCEEEEEEChhhcCHH-------------HHHHHHHhhcc----------CCCCEEEEEec----CChHHhHHHHHHhce
Confidence 6779999999999643 56799999984 22356777765 345678899999996
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
.+.|.+++.+++.+.+. +.+..+|+ .++++++.+||+.+ .++.|.+.+.+++++.
T Consensus 172 -~~~f~~l~~~el~~~L~-----------~i~~~egi--~id~eAl~lLa~~s--------~GdlR~alslLdklis--- 226 (563)
T PRK06647 172 -HFNFRLLSLEKIYNMLK-----------KVCLEDQI--KYEDEALKWIAYKS--------TGSVRDAYTLFDQVVS--- 226 (563)
T ss_pred -EEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHh---
Confidence 47999999999888774 22334565 68999999999887 4679999999988753
Q ss_pred cccCCCceeecHHHHHhHhC
Q psy2406 432 FNSNNISLLVDADYVNSRLG 451 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~ 451 (464)
+. .. .||.+.|.+.++
T Consensus 227 ~~--~~--~It~e~V~~llg 242 (563)
T PRK06647 227 FS--DS--DITLEQIRSKMG 242 (563)
T ss_pred hc--CC--CCCHHHHHHHhC
Confidence 21 12 367777777654
No 101
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=9.2e-13 Score=135.83 Aligned_cols=126 Identities=20% Similarity=0.376 Sum_probs=90.5
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
++.||+|||+|.+... .++.||..|+.. ..+.++|+++ +++..+.|++.+|+.
T Consensus 108 ~~kiviIDE~~~l~~~-------------~~~~ll~~le~~----------~~~~~~Il~~----~~~~kl~~~l~sr~~ 160 (367)
T PRK14970 108 KYKIYIIDEVHMLSSA-------------AFNAFLKTLEEP----------PAHAIFILAT----TEKHKIIPTILSRCQ 160 (367)
T ss_pred CcEEEEEeChhhcCHH-------------HHHHHHHHHhCC----------CCceEEEEEe----CCcccCCHHHHhcce
Confidence 4679999999988642 456888888752 2234555554 245678899999996
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
++.|++++.+++..++. +.+..+|+ .+++++++.|++.+ +++.|.+.+.++++..-
T Consensus 161 -~v~~~~~~~~~l~~~l~-----------~~~~~~g~--~i~~~al~~l~~~~--------~gdlr~~~~~lekl~~y-- 216 (367)
T PRK14970 161 -IFDFKRITIKDIKEHLA-----------GIAVKEGI--KFEDDALHIIAQKA--------DGALRDALSIFDRVVTF-- 216 (367)
T ss_pred -eEecCCccHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHhC--------CCCHHHHHHHHHHHHHh--
Confidence 57999999999988874 22334565 68899999999876 56899999999987632
Q ss_pred cccCCCceeecHHHHHhHhCCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGDL 453 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~~ 453 (464)
.. .. ||.++|+..++..
T Consensus 217 -~~--~~--it~~~v~~~~~~~ 233 (367)
T PRK14970 217 -CG--KN--ITRQAVTENLNIL 233 (367)
T ss_pred -cC--CC--CCHHHHHHHhCCC
Confidence 11 11 7777777766543
No 102
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=4.5e-13 Score=148.56 Aligned_cols=124 Identities=18% Similarity=0.324 Sum_probs=92.6
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
++.|++|||+|.+... .++.||..||.. ..+++||+++ .++..+.|.+++|+-
T Consensus 118 ~~KV~IIDEa~~LT~~-------------A~NALLKtLEEP----------P~~tifILaT----te~~KLl~TI~SRcq 170 (725)
T PRK07133 118 KYKIYIIDEVHMLSKS-------------AFNALLKTLEEP----------PKHVIFILAT----TEVHKIPLTILSRVQ 170 (725)
T ss_pred CCEEEEEEChhhCCHH-------------HHHHHHHHhhcC----------CCceEEEEEc----CChhhhhHHHHhhce
Confidence 5789999999998743 567999999852 3455777765 367788899999995
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
++.|.+|+.+++..++. ..+..+|+ .++++++..||+.+ .++.|.+.+.++++..
T Consensus 171 -~ieF~~L~~eeI~~~L~-----------~il~kegI--~id~eAl~~LA~lS--------~GslR~AlslLekl~~--- 225 (725)
T PRK07133 171 -RFNFRRISEDEIVSRLE-----------FILEKENI--SYEKNALKLIAKLS--------SGSLRDALSIAEQVSI--- 225 (725)
T ss_pred -eEEccCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 68999999999988874 23334464 78899999999888 5778999999987642
Q ss_pred cccCCCceeecHHHHHhHhC
Q psy2406 432 FNSNNISLLVDADYVNSRLG 451 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~ 451 (464)
|. .. .||.+.|.+.++
T Consensus 226 y~--~~--~It~e~V~ellg 241 (725)
T PRK07133 226 FG--NN--KITLKNVEELFG 241 (725)
T ss_pred hc--cC--CCCHHHHHHHHc
Confidence 22 12 367777666544
No 103
>PRK04195 replication factor C large subunit; Provisional
Probab=99.49 E-value=8e-13 Score=141.60 Aligned_cols=107 Identities=24% Similarity=0.373 Sum_probs=73.9
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCch-hhhccC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIP-ELQGRF 350 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~P-Efl~R~ 350 (464)
++.||+|||+|.++... +.+.++.|+.+++... ..+|+++ +.++.+.+ .+.+|+
T Consensus 98 ~~kvIiIDEaD~L~~~~---------d~~~~~aL~~~l~~~~------------~~iIli~----n~~~~~~~k~Lrsr~ 152 (482)
T PRK04195 98 RRKLILLDEVDGIHGNE---------DRGGARAILELIKKAK------------QPIILTA----NDPYDPSLRELRNAC 152 (482)
T ss_pred CCeEEEEecCccccccc---------chhHHHHHHHHHHcCC------------CCEEEec----cCccccchhhHhccc
Confidence 46799999999987531 1234567888876321 1233333 34556666 777887
Q ss_pred CeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHH
Q psy2406 351 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEK 425 (464)
Q Consensus 351 d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~ 425 (464)
. .|.|++|+..++..++. ..+..+|+ .+++++++.|++.+ .++.|.+.+.++.
T Consensus 153 ~-~I~f~~~~~~~i~~~L~-----------~i~~~egi--~i~~eaL~~Ia~~s--------~GDlR~ain~Lq~ 205 (482)
T PRK04195 153 L-MIEFKRLSTRSIVPVLK-----------RICRKEGI--ECDDEALKEIAERS--------GGDLRSAINDLQA 205 (482)
T ss_pred e-EEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHH
Confidence 5 57999999999888874 23344565 67899999999887 4677777776665
No 104
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=7.5e-13 Score=142.06 Aligned_cols=125 Identities=18% Similarity=0.269 Sum_probs=91.7
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.|++|||+|.+... .++.||..|+.. ..+++||.++ +++..+.+.+.+|+.
T Consensus 119 ~~KVvIIDEad~Lt~~-------------a~naLLk~LEep----------p~~~v~Il~t----t~~~kl~~tI~SRc~ 171 (486)
T PRK14953 119 KYKVYIIDEAHMLTKE-------------AFNALLKTLEEP----------PPRTIFILCT----TEYDKIPPTILSRCQ 171 (486)
T ss_pred CeeEEEEEChhhcCHH-------------HHHHHHHHHhcC----------CCCeEEEEEE----CCHHHHHHHHHHhce
Confidence 5679999999988643 456899999852 2234555554 245567788999996
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
++.|++++.+++..++. ..+...|+ .++++++..|+..+ +++.|.+.+.+++++.
T Consensus 172 -~i~f~~ls~~el~~~L~-----------~i~k~egi--~id~~al~~La~~s--------~G~lr~al~~Ldkl~~--- 226 (486)
T PRK14953 172 -RFIFSKPTKEQIKEYLK-----------RICNEEKI--EYEEKALDLLAQAS--------EGGMRDAASLLDQAST--- 226 (486)
T ss_pred -EEEcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 58999999999988874 33444564 78999999999876 5789999999998752
Q ss_pred cccCCCceeecHHHHHhHhCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~ 452 (464)
|. .. .||.++|++.++.
T Consensus 227 ~~--~~--~It~~~V~~~lg~ 243 (486)
T PRK14953 227 YG--EG--KVTIKVVEEFLGI 243 (486)
T ss_pred hc--CC--CcCHHHHHHHhCC
Confidence 32 12 4788888776654
No 105
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.48 E-value=2.3e-13 Score=132.80 Aligned_cols=132 Identities=16% Similarity=0.198 Sum_probs=86.3
Q ss_pred CcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCC---Cchhhhcc
Q psy2406 273 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD---LIPELQGR 349 (464)
Q Consensus 273 ~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~---f~PEfl~R 349 (464)
..+|+||||+.+..+.. ..+.+++.+...++.+ +..+|+|++ ..|.. +.|.|.+|
T Consensus 98 ~dlliiDdi~~~~~~~~-------~~~~lf~l~n~~~e~g------------~~~li~ts~---~~p~~l~~~~~~L~SR 155 (235)
T PRK08084 98 LSLVCIDNIECIAGDEL-------WEMAIFDLYNRILESG------------RTRLLITGD---RPPRQLNLGLPDLASR 155 (235)
T ss_pred CCEEEEeChhhhcCCHH-------HHHHHHHHHHHHHHcC------------CCeEEEeCC---CChHHcCcccHHHHHH
Confidence 46999999999864321 1222333333444321 222344442 22332 57999999
Q ss_pred CC--eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHH
Q psy2406 350 FP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 427 (464)
Q Consensus 350 ~d--~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l 427 (464)
+. .++.+.+|+.+++.+|++ +....+| +.++++++++|++++ ..++|.+..+++++-
T Consensus 156 l~~g~~~~l~~~~~~~~~~~l~-----------~~a~~~~--~~l~~~v~~~L~~~~--------~~d~r~l~~~l~~l~ 214 (235)
T PRK08084 156 LDWGQIYKLQPLSDEEKLQALQ-----------LRARLRG--FELPEDVGRFLLKRL--------DREMRTLFMTLDQLD 214 (235)
T ss_pred HhCCceeeecCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHhh--------cCCHHHHHHHHHHHH
Confidence 95 568999999999999984 1223345 589999999999999 468999999999864
Q ss_pred HHHhcccCCCceeecHHHHHhHhC
Q psy2406 428 EEVSFNSNNISLLVDADYVNSRLG 451 (464)
Q Consensus 428 ~~~l~~~~~~~v~I~~e~v~~~~~ 451 (464)
...+.. +-.||.+.+++.++
T Consensus 215 ~~~l~~----~~~it~~~~k~~l~ 234 (235)
T PRK08084 215 RASITA----QRKLTIPFVKEILK 234 (235)
T ss_pred HHHHhc----CCCCCHHHHHHHHc
Confidence 222211 12488888887653
No 106
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.47 E-value=8.1e-13 Score=134.52 Aligned_cols=125 Identities=21% Similarity=0.395 Sum_probs=89.8
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
++.||+|||+|.+... .++.||..++.. ..++++|+++ +++..+.+.+.+|+.
T Consensus 117 ~~~vviidea~~l~~~-------------~~~~Ll~~le~~----------~~~~~lIl~~----~~~~~l~~~l~sr~~ 169 (355)
T TIGR02397 117 KYKVYIIDEVHMLSKS-------------AFNALLKTLEEP----------PEHVVFILAT----TEPHKIPATILSRCQ 169 (355)
T ss_pred CceEEEEeChhhcCHH-------------HHHHHHHHHhCC----------ccceeEEEEe----CCHHHHHHHHHhhee
Confidence 4679999999998632 456899998752 2244555554 355567889999995
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
.+.|.+++.+++.+++. ..+...|+ .++++++.+|++.+ +++.|.+.+.+++....
T Consensus 170 -~~~~~~~~~~~l~~~l~-----------~~~~~~g~--~i~~~a~~~l~~~~--------~g~~~~a~~~lekl~~~-- 225 (355)
T TIGR02397 170 -RFDFKRIPLEDIVERLK-----------KILDKEGI--KIEDEALELIARAA--------DGSLRDALSLLDQLISF-- 225 (355)
T ss_pred -EEEcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCChHHHHHHHHHHHhh--
Confidence 57999999999998884 22334455 77899999999877 46788898988887542
Q ss_pred cccCCCceeecHHHHHhHhCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~ 452 (464)
. .. .||.++|++.++.
T Consensus 226 -~--~~--~it~~~v~~~~~~ 241 (355)
T TIGR02397 226 -G--NG--NITYEDVNELLGL 241 (355)
T ss_pred -c--CC--CCCHHHHHHHhCC
Confidence 1 12 3787777766543
No 107
>KOG0989|consensus
Probab=99.47 E-value=2.8e-13 Score=135.70 Aligned_cols=107 Identities=26% Similarity=0.368 Sum_probs=79.9
Q ss_pred cCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccC
Q psy2406 271 EQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF 350 (464)
Q Consensus 271 ~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~ 350 (464)
.|+-||.|||.|.+..+ .|.+|...||.....+ ..++||. -.+-+++.+.+|+
T Consensus 128 ~~fKiiIlDEcdsmtsd-------------aq~aLrr~mE~~s~~t--------rFiLIcn------ylsrii~pi~SRC 180 (346)
T KOG0989|consen 128 PPFKIIILDECDSMTSD-------------AQAALRRTMEDFSRTT--------RFILICN------YLSRIIRPLVSRC 180 (346)
T ss_pred CcceEEEEechhhhhHH-------------HHHHHHHHHhccccce--------EEEEEcC------ChhhCChHHHhhH
Confidence 36689999999999865 5669999999632211 2245553 3556888999999
Q ss_pred CeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHH
Q psy2406 351 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 426 (464)
Q Consensus 351 d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~ 426 (464)
.- +.|++|..+++...|+ .....+|+ .++++|++.|++.+ .++-|..-..+|.+
T Consensus 181 ~K-frFk~L~d~~iv~rL~-----------~Ia~~E~v--~~d~~al~~I~~~S--------~GdLR~Ait~Lqsl 234 (346)
T KOG0989|consen 181 QK-FRFKKLKDEDIVDRLE-----------KIASKEGV--DIDDDALKLIAKIS--------DGDLRRAITTLQSL 234 (346)
T ss_pred HH-hcCCCcchHHHHHHHH-----------HHHHHhCC--CCCHHHHHHHHHHc--------CCcHHHHHHHHHHh
Confidence 76 7999999988777763 33455676 78899999999998 46777777777764
No 108
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=7e-13 Score=141.14 Aligned_cols=125 Identities=18% Similarity=0.249 Sum_probs=92.1
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
++.||+|||+|++... .++.||..||.. ..+++||+++ +++..+.+.+.+|+.
T Consensus 121 ~~kvvIIdead~lt~~-------------~~n~LLk~lEep----------~~~~~~Il~t----~~~~kl~~tI~sRc~ 173 (451)
T PRK06305 121 RYKIYIIDEVHMLTKE-------------AFNSLLKTLEEP----------PQHVKFFLAT----TEIHKIPGTILSRCQ 173 (451)
T ss_pred CCEEEEEecHHhhCHH-------------HHHHHHHHhhcC----------CCCceEEEEe----CChHhcchHHHHhce
Confidence 6789999999999643 567999999852 2345666654 355678899999996
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
. +.|++++.+++.+.+. ..+..+|+ .+++++++.|++.+ +++.|.+.+.++++..
T Consensus 174 ~-v~f~~l~~~el~~~L~-----------~~~~~eg~--~i~~~al~~L~~~s--------~gdlr~a~~~Lekl~~--- 228 (451)
T PRK06305 174 K-MHLKRIPEETIIDKLA-----------LIAKQEGI--ETSREALLPIARAA--------QGSLRDAESLYDYVVG--- 228 (451)
T ss_pred E-EeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 4 7999999999888774 22333454 67999999999888 4678999999888643
Q ss_pred cccCCCceeecHHHHHhHhCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~ 452 (464)
+. . . .||.++|++.++.
T Consensus 229 ~~-~-~--~It~~~V~~l~~~ 245 (451)
T PRK06305 229 LF-P-K--SLDPDSVAKALGL 245 (451)
T ss_pred hc-c-C--CcCHHHHHHHHCC
Confidence 21 1 2 3788877766554
No 109
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.8e-12 Score=142.21 Aligned_cols=125 Identities=20% Similarity=0.293 Sum_probs=93.2
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.||+|||+|.+... .++.||+.||.. -.++.||+++ +++..+.+.+++|+-
T Consensus 132 ~~KVvIIDEad~Ls~~-------------a~naLLKtLEeP----------p~~~~fIl~t----te~~kll~tI~SRcq 184 (598)
T PRK09111 132 RYKVYIIDEVHMLSTA-------------AFNALLKTLEEP----------PPHVKFIFAT----TEIRKVPVTVLSRCQ 184 (598)
T ss_pred CcEEEEEEChHhCCHH-------------HHHHHHHHHHhC----------CCCeEEEEEe----CChhhhhHHHHhhee
Confidence 5789999999999743 467999999842 2234555554 244557788999995
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
++.|.+++.+++.+.+. +.+..+|+ .+++++++.|++.+ .++.|.+.+.+++.+.
T Consensus 185 -~~~f~~l~~~el~~~L~-----------~i~~kegi--~i~~eAl~lIa~~a--------~Gdlr~al~~Ldkli~--- 239 (598)
T PRK09111 185 -RFDLRRIEADVLAAHLS-----------RIAAKEGV--EVEDEALALIARAA--------EGSVRDGLSLLDQAIA--- 239 (598)
T ss_pred -EEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHh---
Confidence 58999999999988874 22334455 68899999999988 5789999999988653
Q ss_pred cccCCCceeecHHHHHhHhCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~ 452 (464)
+. .+ .||.++|++.++.
T Consensus 240 ~g--~g--~It~e~V~~llg~ 256 (598)
T PRK09111 240 HG--AG--EVTAEAVRDMLGL 256 (598)
T ss_pred hc--CC--CcCHHHHHHHhCC
Confidence 21 12 5899999887764
No 110
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=5.2e-13 Score=145.52 Aligned_cols=123 Identities=20% Similarity=0.372 Sum_probs=89.8
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
++.|++|||+|.+... .++.||..||.. ..+++||+++ +.+..+.|.+++|+.
T Consensus 119 ~~KVIIIDEad~Lt~~-------------A~NaLLKtLEEP----------p~~tvfIL~T----t~~~KLl~TI~SRcq 171 (605)
T PRK05896 119 KYKVYIIDEAHMLSTS-------------AWNALLKTLEEP----------PKHVVFIFAT----TEFQKIPLTIISRCQ 171 (605)
T ss_pred CcEEEEEechHhCCHH-------------HHHHHHHHHHhC----------CCcEEEEEEC----CChHhhhHHHHhhhh
Confidence 5679999999998643 567999999842 2345666665 356778899999996
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
++.|.+|+.+++...+. ..+..+|+ .++++++..|++.+ +++.|.+.+.++++..
T Consensus 172 -~ieF~~Ls~~eL~~~L~-----------~il~kegi--~Is~eal~~La~lS--------~GdlR~AlnlLekL~~--- 226 (605)
T PRK05896 172 -RYNFKKLNNSELQELLK-----------SIAKKEKI--KIEDNAIDKIADLA--------DGSLRDGLSILDQLST--- 226 (605)
T ss_pred -hcccCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCcHHHHHHHHHHHHh---
Confidence 57999999999988874 22334454 67899999999888 4679999999988542
Q ss_pred cccCCCceeecHHHHHhHh
Q psy2406 432 FNSNNISLLVDADYVNSRL 450 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~ 450 (464)
+. +. .||.++|...+
T Consensus 227 y~--~~--~It~e~V~ell 241 (605)
T PRK05896 227 FK--NS--EIDIEDINKTF 241 (605)
T ss_pred hc--CC--CCCHHHHHHHh
Confidence 11 11 26666666543
No 111
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=2e-12 Score=139.80 Aligned_cols=124 Identities=19% Similarity=0.295 Sum_probs=92.0
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
++-|++|||+|.+... .++.||..||.. .+++.||+++ +.+..+.|.+++|+.
T Consensus 117 ~~KVvIIDEad~Lt~~-------------A~NALLK~LEEp----------p~~t~FIL~t----td~~kL~~tI~SRc~ 169 (535)
T PRK08451 117 RFKIFIIDEVHMLTKE-------------AFNALLKTLEEP----------PSYVKFILAT----TDPLKLPATILSRTQ 169 (535)
T ss_pred CeEEEEEECcccCCHH-------------HHHHHHHHHhhc----------CCceEEEEEE----CChhhCchHHHhhce
Confidence 5679999999999743 577999999852 3345666665 356778899999985
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
++.|.+++.+++...+. ..+..+|+ .++++++..|++.+ .++.|.+.+.+++.+..
T Consensus 170 -~~~F~~Ls~~ei~~~L~-----------~Il~~EGi--~i~~~Al~~Ia~~s--------~GdlR~alnlLdqai~~-- 225 (535)
T PRK08451 170 -HFRFKQIPQNSIISHLK-----------TILEKEGV--SYEPEALEILARSG--------NGSLRDTLTLLDQAIIY-- 225 (535)
T ss_pred -eEEcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCcHHHHHHHHHHHHHh--
Confidence 68999999999888773 33445565 67899999999988 57899999999887632
Q ss_pred cccCCCceeecHHHHHhHhC
Q psy2406 432 FNSNNISLLVDADYVNSRLG 451 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~ 451 (464)
. .. .||.+.|.+.++
T Consensus 226 -~--~~--~It~~~V~~~lg 240 (535)
T PRK08451 226 -C--KN--AITESKVADMLG 240 (535)
T ss_pred -c--CC--CCCHHHHHHHhC
Confidence 2 11 356666665544
No 112
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=2.1e-12 Score=142.04 Aligned_cols=130 Identities=16% Similarity=0.306 Sum_probs=92.5
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
++-||+|||+|++... .++.||..||.- ..+++||+++ +++..+.+.+.+|+-
T Consensus 127 ~~KVvIIdEad~Lt~~-------------a~naLLK~LEeP----------p~~tv~IL~t----~~~~kLl~TI~SRc~ 179 (620)
T PRK14954 127 RYRVYIIDEVHMLSTA-------------AFNAFLKTLEEP----------PPHAIFIFAT----TELHKIPATIASRCQ 179 (620)
T ss_pred CCEEEEEeChhhcCHH-------------HHHHHHHHHhCC----------CCCeEEEEEe----CChhhhhHHHHhhce
Confidence 5679999999999643 467999999852 1234555543 245678889999995
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
+|.|.+++.+++...+. +.+..+|+ .+++++++.|+..+ +++.|.+.+.++++..
T Consensus 180 -~vef~~l~~~ei~~~L~-----------~i~~~egi--~I~~eal~~La~~s--------~Gdlr~al~eLeKL~~--- 234 (620)
T PRK14954 180 -RFNFKRIPLDEIQSQLQ-----------MICRAEGI--QIDADALQLIARKA--------QGSMRDAQSILDQVIA--- 234 (620)
T ss_pred -EEecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHh--------CCCHHHHHHHHHHHHH---
Confidence 57999999999887763 22333454 68999999999988 5789999999998653
Q ss_pred cccC-CCceeecHHHHHhHhCCC
Q psy2406 432 FNSN-NISLLVDADYVNSRLGDL 453 (464)
Q Consensus 432 ~~~~-~~~v~I~~e~v~~~~~~~ 453 (464)
|... +..-.||.++|.+.++..
T Consensus 235 y~~~~~~~~~It~~~V~~lv~~~ 257 (620)
T PRK14954 235 FSVGSEAEKVIAYQGVAELLNYI 257 (620)
T ss_pred hccccccCCccCHHHHHHHHcCC
Confidence 2211 112357888887766543
No 113
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.46 E-value=4.1e-13 Score=143.96 Aligned_cols=126 Identities=18% Similarity=0.337 Sum_probs=100.0
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.|-|.+|||+|-+... ..++||+.||. ..+|+.||++| ..+..+++..+||+-
T Consensus 119 ryKVyiIDEvHMLS~~-------------afNALLKTLEE----------PP~hV~FIlAT----Te~~Kip~TIlSRcq 171 (515)
T COG2812 119 RYKVYIIDEVHMLSKQ-------------AFNALLKTLEE----------PPSHVKFILAT----TEPQKIPNTILSRCQ 171 (515)
T ss_pred cceEEEEecHHhhhHH-------------HHHHHhccccc----------CccCeEEEEec----CCcCcCchhhhhccc
Confidence 5779999999999765 45699999986 46789999997 478889999999996
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
. +.|+.++.+++..-+. ..+..++| .++++|+.+||+.+ +++.|...+++.+.+.-
T Consensus 172 ~-f~fkri~~~~I~~~L~-----------~i~~~E~I--~~e~~aL~~ia~~a--------~Gs~RDalslLDq~i~~-- 227 (515)
T COG2812 172 R-FDFKRLDLEEIAKHLA-----------AILDKEGI--NIEEDALSLIARAA--------EGSLRDALSLLDQAIAF-- 227 (515)
T ss_pred c-ccccCCCHHHHHHHHH-----------HHHHhcCC--ccCHHHHHHHHHHc--------CCChhhHHHHHHHHHHc--
Confidence 5 7999999998777663 34455666 88899999999998 68999999999887642
Q ss_pred cccCCCceeecHHHHHhHhCCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGDL 453 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~~ 453 (464)
.+ -.||.+.|.+.++-.
T Consensus 228 ---~~--~~It~~~v~~~lG~~ 244 (515)
T COG2812 228 ---GE--GEITLESVRDMLGLT 244 (515)
T ss_pred ---cC--CcccHHHHHHHhCCC
Confidence 11 247777777766643
No 114
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=5.4e-13 Score=139.70 Aligned_cols=130 Identities=15% Similarity=0.286 Sum_probs=91.2
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
++.||+|||+|+++.. .++.||..|+.. ...++||+++ +++..+.+.+.+|+.
T Consensus 127 ~~kvvIIdea~~l~~~-------------~~~~LLk~LEep----------~~~t~~Il~t----~~~~kl~~tl~sR~~ 179 (397)
T PRK14955 127 RYRVYIIDEVHMLSIA-------------AFNAFLKTLEEP----------PPHAIFIFAT----TELHKIPATIASRCQ 179 (397)
T ss_pred CeEEEEEeChhhCCHH-------------HHHHHHHHHhcC----------CCCeEEEEEe----CChHHhHHHHHHHHH
Confidence 5679999999999743 456899999842 1233445443 245578889999996
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
++.|.+++.+++.+.+. ..+..+| +.+++++++.|+..+ +++.|.+.+.++++..
T Consensus 180 -~v~f~~l~~~ei~~~l~-----------~~~~~~g--~~i~~~al~~l~~~s--------~g~lr~a~~~L~kl~~--- 234 (397)
T PRK14955 180 -RFNFKRIPLEEIQQQLQ-----------GICEAEG--ISVDADALQLIGRKA--------QGSMRDAQSILDQVIA--- 234 (397)
T ss_pred -HhhcCCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 57999999999888774 2233344 478999999999888 5678999999887642
Q ss_pred cccC-CCceeecHHHHHhHhCCC
Q psy2406 432 FNSN-NISLLVDADYVNSRLGDL 453 (464)
Q Consensus 432 ~~~~-~~~v~I~~e~v~~~~~~~ 453 (464)
|... +..-.||.++|++.++..
T Consensus 235 ~~~~~~~~~~It~~~v~~~v~~~ 257 (397)
T PRK14955 235 FSVESEGEGSIRYDKVAELLNYI 257 (397)
T ss_pred hccccCCCCccCHHHHHHHHCCC
Confidence 2111 112368888887766543
No 115
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.44 E-value=1.6e-12 Score=130.82 Aligned_cols=114 Identities=18% Similarity=0.315 Sum_probs=81.6
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
++.||+|||+|++... ..++.|..+++.. .++..+|+++ +.+..+.|++.+|+.
T Consensus 100 ~~~vliiDe~d~l~~~------------~~~~~L~~~le~~----------~~~~~~Ilt~----n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 100 GGKVIIIDEFDRLGLA------------DAQRHLRSFMEAY----------SKNCSFIITA----NNKNGIIEPLRSRCR 153 (316)
T ss_pred CCeEEEEECcccccCH------------HHHHHHHHHHHhc----------CCCceEEEEc----CChhhchHHHHhhce
Confidence 5789999999988422 1455677777742 2344566665 345578899999996
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 426 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~ 426 (464)
.+.|+.++.+++..++. ..+.++...+..+|+ .++++++.+|++.+ ..+.|.+.+.++..
T Consensus 154 -~i~~~~p~~~~~~~il~----~~~~~~~~~~~~~~~--~i~~~al~~l~~~~--------~~d~r~~l~~l~~~ 213 (316)
T PHA02544 154 -VIDFGVPTKEEQIEMMK----QMIVRCKGILEAEGV--EVDMKVLAALVKKN--------FPDFRRTINELQRY 213 (316)
T ss_pred -EEEeCCCCHHHHHHHHH----HHHHHHHHHHHhcCC--CCCHHHHHHHHHhc--------CCCHHHHHHHHHHH
Confidence 47999999999998884 355555556666676 56899999999876 35778777777654
No 116
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.43 E-value=1.2e-12 Score=149.00 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=69.6
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccC-CCCCchhhhccC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAK-PSDLIPELQGRF 350 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~-p~~f~PEfl~R~ 350 (464)
.++|+||||||.+.+.+.+.++ ...++.|++.|+.+ .+.+|++|+...-+ -...+|+|.+||
T Consensus 271 ~~~ILfIDEih~l~~~~~~~~~-----~d~~~~lkp~l~~g------------~l~~IgaTt~~e~r~~~~~d~al~rRf 333 (857)
T PRK10865 271 GNVILFIDELHTMVGAGKADGA-----MDAGNMLKPALARG------------ELHCVGATTLDEYRQYIEKDAALERRF 333 (857)
T ss_pred CCeEEEEecHHHhccCCCCccc-----hhHHHHhcchhhcC------------CCeEEEcCCCHHHHHHhhhcHHHHhhC
Confidence 5789999999999876543111 22567888888643 35778887531111 124789999999
Q ss_pred CeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhc
Q psy2406 351 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 406 (464)
Q Consensus 351 d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~ 406 (464)
+. |.+..++.++...|++ .+..++. . ...+.++++++...+..+..
T Consensus 334 ~~-i~v~eP~~~~~~~iL~----~l~~~~e---~--~~~v~~~d~a~~~a~~ls~r 379 (857)
T PRK10865 334 QK-VFVAEPSVEDTIAILR----GLKERYE---L--HHHVQITDPAIVAAATLSHR 379 (857)
T ss_pred CE-EEeCCCCHHHHHHHHH----HHhhhhc---c--CCCCCcCHHHHHHHHHHhhc
Confidence 86 5677779999999884 2322221 1 12457778877776555543
No 117
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.42 E-value=4.5e-12 Score=141.39 Aligned_cols=137 Identities=20% Similarity=0.266 Sum_probs=95.1
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
...||+|||||.+... .|+.|+.+++-.. ...+.+++|+.++ ...-+..+.|.+.+|+.
T Consensus 869 ~v~IIILDEID~L~kK-------------~QDVLYnLFR~~~-------~s~SKLiLIGISN-dlDLperLdPRLRSRLg 927 (1164)
T PTZ00112 869 NVSILIIDEIDYLITK-------------TQKVLFTLFDWPT-------KINSKLVLIAISN-TMDLPERLIPRCRSRLA 927 (1164)
T ss_pred cceEEEeehHhhhCcc-------------HHHHHHHHHHHhh-------ccCCeEEEEEecC-chhcchhhhhhhhhccc
Confidence 4579999999999753 2457777776311 1234567777653 12234457788889986
Q ss_pred e-EEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHH
Q psy2406 352 I-RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 430 (464)
Q Consensus 352 ~-iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~ 430 (464)
. .+.|+|++.+++..||.. .+.. ..-.++++|+.++|+.+... .++||....+++..++.
T Consensus 928 ~eeIvF~PYTaEQL~dILk~----RAe~---------A~gVLdDdAIELIArkVAq~-----SGDARKALDILRrAgEi- 988 (1164)
T PTZ00112 928 FGRLVFSPYKGDEIEKIIKE----RLEN---------CKEIIDHTAIQLCARKVANV-----SGDIRKALQICRKAFEN- 988 (1164)
T ss_pred cccccCCCCCHHHHHHHHHH----HHHh---------CCCCCCHHHHHHHHHhhhhc-----CCHHHHHHHHHHHHHhh-
Confidence 4 378999999999999952 1111 12358999999999977654 68999999999887753
Q ss_pred hcccCCCceeecHHHHHhHhCCC
Q psy2406 431 SFNSNNISLLVDADYVNSRLGDL 453 (464)
Q Consensus 431 l~~~~~~~v~I~~e~v~~~~~~~ 453 (464)
.... .|+.++|.++...+
T Consensus 989 ----kegs-kVT~eHVrkAleei 1006 (1164)
T PTZ00112 989 ----KRGQ-KIVPRDITEATNQL 1006 (1164)
T ss_pred ----cCCC-ccCHHHHHHHHHHH
Confidence 2222 67888888776543
No 118
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.41 E-value=2.1e-12 Score=135.08 Aligned_cols=137 Identities=17% Similarity=0.287 Sum_probs=84.9
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
...+|+|||||.+.... ..|..|+.+++...- ....++| +++.....-..+.+.+.+||.
T Consensus 199 ~~dlLiiDDi~~l~~~~-----------~~~~~l~~~~n~~~~--------~~~~iii-ts~~~p~~l~~l~~~l~SRl~ 258 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKE-----------RTQEEFFHTFNALHE--------NGKQIVL-TSDRPPKELPGLEERLRSRFE 258 (405)
T ss_pred hCCEEEEehhhhhcCCH-----------HHHHHHHHHHHHHHH--------CCCCEEE-ecCCCHHHHhhhhhhhhhhcc
Confidence 35799999999986431 245567776653110 0111222 322111111236788999996
Q ss_pred --eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHH
Q psy2406 352 --IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 429 (464)
Q Consensus 352 --~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~ 429 (464)
.+|.|++++.+++..|++ +.+...+ +.++++++++||+.. ...+|.|..+|.++...
T Consensus 259 ~g~~v~i~~pd~~~r~~il~-----------~~~~~~~--~~l~~e~l~~ia~~~--------~~~~r~l~~~l~~l~~~ 317 (405)
T TIGR00362 259 WGLVVDIEPPDLETRLAILQ-----------KKAEEEG--LELPDEVLEFIAKNI--------RSNVRELEGALNRLLAY 317 (405)
T ss_pred CCeEEEeCCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHhc--------CCCHHHHHHHHHHHHHH
Confidence 478999999999999985 2223334 578999999999877 45789999888877543
Q ss_pred HhcccCCCceeecHHHHHhHhCCC
Q psy2406 430 VSFNSNNISLLVDADYVNSRLGDL 453 (464)
Q Consensus 430 ~l~~~~~~~v~I~~e~v~~~~~~~ 453 (464)
....- -.||.+.+++.+...
T Consensus 318 a~~~~----~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 318 ASLTG----KPITLELAKEALKDL 337 (405)
T ss_pred HHHhC----CCCCHHHHHHHHHHh
Confidence 32111 135555555555443
No 119
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.40 E-value=1.5e-12 Score=129.00 Aligned_cols=142 Identities=14% Similarity=0.088 Sum_probs=85.5
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeee------eecCceeEeeccCCccc-cCCCCCch
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG------IIKTDHILFIASGAFHL-AKPSDLIP 344 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~------~i~Tsnil~I~ag~f~~-~~p~~f~P 344 (464)
.+++++||||+++.++ +|+.||.+|+.+.+..... .....+..+|+|++... .-...+++
T Consensus 105 ~g~~lllDEi~r~~~~-------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~ 171 (262)
T TIGR02640 105 EGFTLVYDEFTRSKPE-------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQD 171 (262)
T ss_pred cCCEEEEcchhhCCHH-------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccH
Confidence 4679999999998754 7889999998776654321 11224556677764211 01124678
Q ss_pred hhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccc--cCCCccChhHHHHH
Q psy2406 345 ELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCIN--ERTENIGARRLYTA 422 (464)
Q Consensus 345 Efl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~--~~~~~~GAR~L~r~ 422 (464)
+|++|| ..+.+..++.++..+|+... + .++++..+.|++.....- ...-..|-|.+-.+
T Consensus 172 aL~~R~-~~i~i~~P~~~~e~~Il~~~-----------~-------~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~ 232 (262)
T TIGR02640 172 ALLDRL-ITIFMDYPDIDTETAILRAK-----------T-------DVAEDSAATIVRLVREFRASGDEITSGLRASLMI 232 (262)
T ss_pred HHHhhc-EEEECCCCCHHHHHHHHHHh-----------h-------CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHH
Confidence 899999 56799999999999998521 1 245666666665543221 11124565655554
Q ss_pred HHHHHHHHhcccCCCceeecHHHHHhHhC
Q psy2406 423 MEKLLEEVSFNSNNISLLVDADYVNSRLG 451 (464)
Q Consensus 423 IE~~l~~~l~~~~~~~v~I~~e~v~~~~~ 451 (464)
...+ . .+.. ...++.+++++...
T Consensus 233 ~~~~-~--~~~~---~~~~~~~~~~~~~~ 255 (262)
T TIGR02640 233 AEVA-T--QQDI---PVDVDDEDFVDLCI 255 (262)
T ss_pred HHHH-H--HcCC---CCCCCcHHHHHHHH
Confidence 4322 1 1222 23567777766543
No 120
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=5e-12 Score=139.30 Aligned_cols=123 Identities=17% Similarity=0.321 Sum_probs=87.8
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.||+|||+|++... .++.||+.||.. ..+++||+++ +++..+.|.+++|+.
T Consensus 121 ~~KViIIDEad~Lt~~-------------a~naLLK~LEeP----------p~~tvfIL~t----~~~~~llpTIrSRc~ 173 (620)
T PRK14948 121 RWKVYVIDECHMLSTA-------------AFNALLKTLEEP----------PPRVVFVLAT----TDPQRVLPTIISRCQ 173 (620)
T ss_pred CceEEEEECccccCHH-------------HHHHHHHHHhcC----------CcCeEEEEEe----CChhhhhHHHHhhee
Confidence 5679999999999643 567999999852 2345666665 356678899999995
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
++.|.+++.+++...+. ..+..+|+ .++++++..|++.+ +++.|.+.+.+++...
T Consensus 174 -~~~f~~l~~~ei~~~L~-----------~ia~kegi--~is~~al~~La~~s--------~G~lr~A~~lLeklsL--- 228 (620)
T PRK14948 174 -RFDFRRIPLEAMVQHLS-----------EIAEKESI--EIEPEALTLVAQRS--------QGGLRDAESLLDQLSL--- 228 (620)
T ss_pred -EEEecCCCHHHHHHHHH-----------HHHHHhCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHh---
Confidence 57999999988877663 22233454 68899999999888 5778999888887532
Q ss_pred cccCCCceeecHHHHHhHhC
Q psy2406 432 FNSNNISLLVDADYVNSRLG 451 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~ 451 (464)
+. . .||.+.|.+.++
T Consensus 229 ~~---~--~It~e~V~~lvg 243 (620)
T PRK14948 229 LP---G--PITPEAVWDLLG 243 (620)
T ss_pred cc---C--CCCHHHHHHHhc
Confidence 11 1 356666555443
No 121
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.39 E-value=2.7e-12 Score=130.86 Aligned_cols=129 Identities=17% Similarity=0.218 Sum_probs=81.9
Q ss_pred CcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCc--------cccCCCCCch
Q psy2406 273 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAF--------HLAKPSDLIP 344 (464)
Q Consensus 273 ~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f--------~~~~p~~f~P 344 (464)
|+|+||||+|-+.-... ..|-..||.... .++|+|++. +...|..++.
T Consensus 292 pGVLFIDEvHmLDIE~F-------------sFlnrAlEse~a-----------PIii~AtNRG~~kiRGTd~~sPhGIP~ 347 (450)
T COG1224 292 PGVLFIDEVHMLDIECF-------------SFLNRALESELA-----------PIIILATNRGMTKIRGTDIESPHGIPL 347 (450)
T ss_pred cceEEEechhhhhHHHH-------------HHHHHHhhcccC-----------cEEEEEcCCceeeecccCCcCCCCCCH
Confidence 89999999998854422 245556664211 123333332 1345778899
Q ss_pred hhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHH
Q psy2406 345 ELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 424 (464)
Q Consensus 345 Efl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE 424 (464)
.|+.|+ .||.-.|++++++..|++. +...+ ++.++++|+++|++.+.. .+-|..-++++
T Consensus 348 DlLDRl-lII~t~py~~~EireIi~i-----------Ra~ee--~i~l~~~Ale~L~~ig~e-------tSLRYa~qLL~ 406 (450)
T COG1224 348 DLLDRL-LIISTRPYSREEIREIIRI-----------RAKEE--DIELSDDALEYLTDIGEE-------TSLRYAVQLLT 406 (450)
T ss_pred hhhhhe-eEEecCCCCHHHHHHHHHH-----------hhhhh--ccccCHHHHHHHHhhchh-------hhHHHHHHhcc
Confidence 999999 5689999999999999952 12223 458899999999999863 56666555554
Q ss_pred HHHHHHhcccCCCceeecHHHHHhH
Q psy2406 425 KLLEEVSFNSNNISLLVDADYVNSR 449 (464)
Q Consensus 425 ~~l~~~l~~~~~~~v~I~~e~v~~~ 449 (464)
-...- ...-.+ -.|..++|+.+
T Consensus 407 pa~ii--A~~rg~-~~V~~~dVe~a 428 (450)
T COG1224 407 PASII--AKRRGS-KRVEVEDVERA 428 (450)
T ss_pred HHHHH--HHHhCC-CeeehhHHHHH
Confidence 22111 111111 35667777654
No 122
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.39 E-value=6.2e-12 Score=120.02 Aligned_cols=132 Identities=19% Similarity=0.242 Sum_probs=82.8
Q ss_pred CcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCc-hhhhccCC
Q psy2406 273 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLI-PELQGRFP 351 (464)
Q Consensus 273 ~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~-PEfl~R~d 351 (464)
.++|+|||||.+.... ..++.|..+++... .. +..+|++++.... ...+. +.|.+|+.
T Consensus 91 ~~lLvIDdi~~l~~~~-----------~~~~~L~~~l~~~~--------~~-~~~iIits~~~~~-~~~~~~~~L~~r~~ 149 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQP-----------EWQEALFHLYNRVR--------EA-GGRLLIAGRAAPA-QLPLRLPDLRTRLA 149 (226)
T ss_pred CCEEEEeChhhhcCCh-----------HHHHHHHHHHHHHH--------Hc-CCeEEEECCCChH-HCCcccHHHHHHHh
Confidence 4699999999986431 12446666654210 00 1123334321111 11233 78999984
Q ss_pred --eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHH
Q psy2406 352 --IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 429 (464)
Q Consensus 352 --~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~ 429 (464)
..|.+++|+.+++..++.. .+...+ +.++++++.+|++. . .+..|.|+++++++-..
T Consensus 150 ~~~~i~l~~l~~~e~~~~l~~-----------~~~~~~--~~~~~~~l~~L~~~-~-------~gn~r~L~~~l~~~~~~ 208 (226)
T TIGR03420 150 WGLVFQLPPLSDEEKIAALQS-----------RAARRG--LQLPDEVADYLLRH-G-------SRDMGSLMALLDALDRA 208 (226)
T ss_pred cCeeEecCCCCHHHHHHHHHH-----------HHHHcC--CCCCHHHHHHHHHh-c-------cCCHHHHHHHHHHHHHH
Confidence 6789999999998888741 122234 47899999999994 3 47899999999885432
Q ss_pred HhcccCCCceeecHHHHHhHh
Q psy2406 430 VSFNSNNISLLVDADYVNSRL 450 (464)
Q Consensus 430 ~l~~~~~~~v~I~~e~v~~~~ 450 (464)
+.. . ...||.+.+++.+
T Consensus 209 -~~~-~--~~~i~~~~~~~~~ 225 (226)
T TIGR03420 209 -SLA-A--KRKITIPFVKEVL 225 (226)
T ss_pred -HHH-h--CCCCCHHHHHHHh
Confidence 212 2 2368888887764
No 123
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=6.2e-12 Score=137.87 Aligned_cols=125 Identities=19% Similarity=0.274 Sum_probs=90.3
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.||+|||+|++... .++.||..||.. ..+++||+++ ++...+.+.+.+|+.
T Consensus 120 ~~kVvIIDEa~~L~~~-------------a~naLLk~LEep----------p~~tv~Il~t----~~~~kll~tI~SR~~ 172 (585)
T PRK14950 120 RYKVYIIDEVHMLSTA-------------AFNALLKTLEEP----------PPHAIFILAT----TEVHKVPATILSRCQ 172 (585)
T ss_pred CeEEEEEeChHhCCHH-------------HHHHHHHHHhcC----------CCCeEEEEEe----CChhhhhHHHHhccc
Confidence 5779999999998743 466899999852 1234555554 245567788999996
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
. +.|++++..++..++. +.+..+|+ .++++++..|++.+ +++.|.+.+.++++..
T Consensus 173 ~-i~f~~l~~~el~~~L~-----------~~a~~egl--~i~~eal~~La~~s--------~Gdlr~al~~LekL~~--- 227 (585)
T PRK14950 173 R-FDFHRHSVADMAAHLR-----------KIAAAEGI--NLEPGALEAIARAA--------TGSMRDAENLLQQLAT--- 227 (585)
T ss_pred e-eeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 4 7999999999888773 23334555 68899999999887 4678999999998643
Q ss_pred cccCCCceeecHHHHHhHhCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~ 452 (464)
| ... .||.++|++.++.
T Consensus 228 y--~~~--~It~e~V~~ll~~ 244 (585)
T PRK14950 228 T--YGG--EISLSQVQSLLGI 244 (585)
T ss_pred h--cCC--CCCHHHHHHHhcC
Confidence 2 112 4788887776554
No 124
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.39 E-value=6e-12 Score=141.26 Aligned_cols=110 Identities=22% Similarity=0.386 Sum_probs=75.2
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccc-cCCCCCchhhhccC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL-AKPSDLIPELQGRF 350 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~-~~p~~f~PEfl~R~ 350 (464)
.++||||||||.+...+..+. ......+.|.+++..+ .+.+|++|++.. .+....+|+|.+||
T Consensus 278 ~~~ILfIDEIh~L~g~g~~~~----g~~d~~nlLkp~L~~g------------~i~vIgATt~~E~~~~~~~D~AL~rRF 341 (758)
T PRK11034 278 TNSILFIDEIHTIIGAGAASG----GQVDAANLIKPLLSSG------------KIRVIGSTTYQEFSNIFEKDRALARRF 341 (758)
T ss_pred CCCEEEeccHHHHhccCCCCC----cHHHHHHHHHHHHhCC------------CeEEEecCChHHHHHHhhccHHHHhhC
Confidence 578999999999986643211 1122445677777533 457788875321 11235789999999
Q ss_pred CeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhcc
Q psy2406 351 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 407 (464)
Q Consensus 351 d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~ 407 (464)
. .|.+++|+.++..+|+. .+...+.. .+ .+.++++|+..++..+...
T Consensus 342 q-~I~v~ePs~~~~~~IL~----~~~~~ye~---~h--~v~i~~~al~~a~~ls~ry 388 (758)
T PRK11034 342 Q-KIDITEPSIEETVQIIN----GLKPKYEA---HH--DVRYTAKAVRAAVELAVKY 388 (758)
T ss_pred c-EEEeCCCCHHHHHHHHH----HHHHHhhh---cc--CCCcCHHHHHHHHHHhhcc
Confidence 7 58999999999999995 33333332 23 4588899999988877653
No 125
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.39 E-value=2.5e-12 Score=136.53 Aligned_cols=134 Identities=17% Similarity=0.319 Sum_probs=87.0
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCC---CCchhhhc
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS---DLIPELQG 348 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~---~f~PEfl~ 348 (464)
.+.+|+|||||.+.... ..|..|+.+++...- ....++|++. ..|. .+.|.+.+
T Consensus 211 ~~dlLiiDDi~~l~~~~-----------~~~~~l~~~~n~l~~--------~~~~iiits~----~~p~~l~~l~~~l~S 267 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKE-----------RTQEEFFHTFNALHE--------AGKQIVLTSD----RPPKELPGLEERLRS 267 (450)
T ss_pred cCCEEEEehhhhhcCCH-----------HHHHHHHHHHHHHHH--------CCCcEEEECC----CCHHHHHHHHHHHHh
Confidence 46799999999986431 245567766653210 1111333332 1233 27789999
Q ss_pred cCC--eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHH
Q psy2406 349 RFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 426 (464)
Q Consensus 349 R~d--~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~ 426 (464)
||. .++.|++|+.+++.+|++. .+... .+.++++++++||+.. ...+|.|..+|.++
T Consensus 268 Rl~~gl~v~i~~pd~~~r~~il~~-----------~~~~~--~~~l~~e~l~~ia~~~--------~~~~R~l~~~l~~l 326 (450)
T PRK00149 268 RFEWGLTVDIEPPDLETRIAILKK-----------KAEEE--GIDLPDEVLEFIAKNI--------TSNVRELEGALNRL 326 (450)
T ss_pred HhcCCeeEEecCCCHHHHHHHHHH-----------HHHHc--CCCCCHHHHHHHHcCc--------CCCHHHHHHHHHHH
Confidence 995 5789999999999999852 22223 4589999999999887 46899999999887
Q ss_pred HHHHhcccCCCceeecHHHHHhHhCCC
Q psy2406 427 LEEVSFNSNNISLLVDADYVNSRLGDL 453 (464)
Q Consensus 427 l~~~l~~~~~~~v~I~~e~v~~~~~~~ 453 (464)
....... . -.||.+.+++.+...
T Consensus 327 ~~~~~~~--~--~~it~~~~~~~l~~~ 349 (450)
T PRK00149 327 IAYASLT--G--KPITLELAKEALKDL 349 (450)
T ss_pred HHHHHhh--C--CCCCHHHHHHHHHHh
Confidence 5433211 1 135666666655543
No 126
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.38 E-value=1.5e-11 Score=122.90 Aligned_cols=125 Identities=24% Similarity=0.303 Sum_probs=87.1
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
++.||+|||+|.+... .++.|+.+++... .+..+|+++ +.+..+.+++.+|+.
T Consensus 102 ~~~vviiDe~~~l~~~-------------~~~~L~~~le~~~----------~~~~lIl~~----~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-------------AQQALRRTMEMYS----------QNTRFILSC----NYSSKIIDPIQSRCA 154 (319)
T ss_pred CceEEEEeCcccCCHH-------------HHHHHHHHHhcCC----------CCCeEEEEe----CCccccchhHHHHhh
Confidence 4679999999998632 3457888876421 122344443 244567788999997
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
. +.|.+++.+++..++. ..+...|+ .+++++++.|++.+ .+..|.+.+.+++....
T Consensus 155 ~-~~~~~l~~~ei~~~l~-----------~~~~~~~~--~i~~~al~~l~~~~--------~gd~r~~~~~l~~~~~~-- 210 (319)
T PRK00440 155 V-FRFSPLKKEAVAERLR-----------YIAENEGI--EITDDALEAIYYVS--------EGDMRKAINALQAAAAT-- 210 (319)
T ss_pred e-eeeCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHHc--
Confidence 5 7999999999888874 23334455 68999999999876 47889888888765431
Q ss_pred cccCCCceeecHHHHHhHhCCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGDL 453 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~~ 453 (464)
. -.||.++|.+.++..
T Consensus 211 -----~-~~it~~~v~~~~~~~ 226 (319)
T PRK00440 211 -----G-KEVTEEAVYKITGTA 226 (319)
T ss_pred -----C-CCCCHHHHHHHhCCC
Confidence 1 247888887766543
No 127
>PRK08727 hypothetical protein; Validated
Probab=99.38 E-value=7.6e-12 Score=121.95 Aligned_cols=132 Identities=16% Similarity=0.235 Sum_probs=88.2
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCC---CCchhhhc
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS---DLIPELQG 348 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~---~f~PEfl~ 348 (464)
.+.+|+|||||.+..... .+..|+.+++... ....-+|++++ ..|. .+.|.+.+
T Consensus 93 ~~dlLiIDDi~~l~~~~~-----------~~~~lf~l~n~~~---------~~~~~vI~ts~---~~p~~l~~~~~dL~S 149 (233)
T PRK08727 93 GRSLVALDGLESIAGQRE-----------DEVALFDFHNRAR---------AAGITLLYTAR---QMPDGLALVLPDLRS 149 (233)
T ss_pred cCCEEEEeCcccccCChH-----------HHHHHHHHHHHHH---------HcCCeEEEECC---CChhhhhhhhHHHHH
Confidence 467999999998864321 2345665554211 01112344432 1343 35799999
Q ss_pred cC--CeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHH
Q psy2406 349 RF--PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 426 (464)
Q Consensus 349 R~--d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~ 426 (464)
|+ ..++.|++|+.+++.+|+.. .+..++ +.++++++++|++.+ ...+|.+.++++.+
T Consensus 150 Rl~~~~~~~l~~~~~e~~~~iL~~-----------~a~~~~--l~l~~e~~~~La~~~--------~rd~r~~l~~L~~l 208 (233)
T PRK08727 150 RLAQCIRIGLPVLDDVARAAVLRE-----------RAQRRG--LALDEAAIDWLLTHG--------ERELAGLVALLDRL 208 (233)
T ss_pred HHhcCceEEecCCCHHHHHHHHHH-----------HHHHcC--CCCCHHHHHHHHHhC--------CCCHHHHHHHHHHH
Confidence 95 56789999999999999851 122234 589999999999997 46889999999977
Q ss_pred HHHHhcccCCCceeecHHHHHhHhC
Q psy2406 427 LEEVSFNSNNISLLVDADYVNSRLG 451 (464)
Q Consensus 427 l~~~l~~~~~~~v~I~~e~v~~~~~ 451 (464)
....+.. . -.||.+.+++.++
T Consensus 209 ~~~~~~~---~-~~it~~~~~~~l~ 229 (233)
T PRK08727 209 DRESLAA---K-RRVTVPFLRRVLE 229 (233)
T ss_pred HHHHHHh---C-CCCCHHHHHHHHh
Confidence 6433322 1 2588888888764
No 128
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.38 E-value=2.3e-12 Score=146.80 Aligned_cols=108 Identities=19% Similarity=0.264 Sum_probs=71.2
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccC-CCCCchhhhccC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAK-PSDLIPELQGRF 350 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~-p~~f~PEfl~R~ 350 (464)
.++||||||||.+.+.+.+.+. ...++.|.+.++.+ .+.+|++|+...-+ ....+|+|.+||
T Consensus 266 ~~~ILfIDEih~l~~~g~~~~~-----~d~~~~Lk~~l~~g------------~i~~IgaTt~~e~r~~~~~d~al~rRf 328 (852)
T TIGR03346 266 GQIILFIDELHTLVGAGKAEGA-----MDAGNMLKPALARG------------ELHCIGATTLDEYRKYIEKDAALERRF 328 (852)
T ss_pred CCeEEEeccHHHhhcCCCCcch-----hHHHHHhchhhhcC------------ceEEEEeCcHHHHHHHhhcCHHHHhcC
Confidence 4789999999999865432111 12556777777533 45778887532111 124689999999
Q ss_pred CeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhc
Q psy2406 351 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 406 (464)
Q Consensus 351 d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~ 406 (464)
.. |.+..++.++...|+. .+..++. ..+ .+.++++++..++..+..
T Consensus 329 ~~-i~v~~p~~~~~~~iL~----~~~~~~e---~~~--~v~~~d~~i~~~~~ls~~ 374 (852)
T TIGR03346 329 QP-VFVDEPTVEDTISILR----GLKERYE---VHH--GVRITDPAIVAAATLSHR 374 (852)
T ss_pred CE-EEeCCCCHHHHHHHHH----HHHHHhc---ccc--CCCCCHHHHHHHHHhccc
Confidence 76 6889999999999984 2333222 123 346788888888877654
No 129
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.37 E-value=2.7e-12 Score=145.68 Aligned_cols=108 Identities=19% Similarity=0.272 Sum_probs=73.0
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCcccc-CCCCCchhhhccC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLA-KPSDLIPELQGRF 350 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~-~p~~f~PEfl~R~ 350 (464)
.++|+||||||.+.+.+.+.+. ...++.|.+.|..+ .+.+|++|+...- +.....|.|.+||
T Consensus 271 ~~~ILfiDEih~l~~~g~~~g~-----~~~a~lLkp~l~rg------------~l~~IgaTt~~ey~~~ie~D~aL~rRf 333 (821)
T CHL00095 271 NNIILVIDEVHTLIGAGAAEGA-----IDAANILKPALARG------------ELQCIGATTLDEYRKHIEKDPALERRF 333 (821)
T ss_pred CCeEEEEecHHHHhcCCCCCCc-----ccHHHHhHHHHhCC------------CcEEEEeCCHHHHHHHHhcCHHHHhcc
Confidence 5789999999999876542111 12566788877643 3466777642110 1123578999999
Q ss_pred CeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhc
Q psy2406 351 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 406 (464)
Q Consensus 351 d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~ 406 (464)
.. |.+.+++.++...|+. .+...+.+. +++ .++++++..++..+..
T Consensus 334 ~~-I~v~ep~~~e~~aILr----~l~~~~e~~---~~v--~i~deal~~i~~ls~~ 379 (821)
T CHL00095 334 QP-VYVGEPSVEETIEILF----GLRSRYEKH---HNL--SISDKALEAAAKLSDQ 379 (821)
T ss_pred eE-EecCCCCHHHHHHHHH----HHHHHHHHH---cCC--CCCHHHHHHHHHHhhc
Confidence 75 6899999999999984 344444433 234 4899999999888754
No 130
>KOG0744|consensus
Probab=99.37 E-value=2e-12 Score=130.32 Aligned_cols=83 Identities=13% Similarity=0.239 Sum_probs=61.1
Q ss_pred EEEEeccccccCcCCCC-CCCCcch-hhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCCe
Q psy2406 275 IIFLDEIDKITTRSSQN-NNTDISR-AGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 352 (464)
Q Consensus 275 VIfIDEIDK~~~~~~~~-~~~d~~~-~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d~ 352 (464)
-|+||||++++..|.+. ++..+++ ..|.++||+-||-- -...|+++.+|.+ -...++-+|..|-|+
T Consensus 253 fvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl--------K~~~NvliL~TSN----l~~siD~AfVDRADi 320 (423)
T KOG0744|consen 253 FVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL--------KRYPNVLILATSN----LTDSIDVAFVDRADI 320 (423)
T ss_pred EEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh--------ccCCCEEEEeccc----hHHHHHHHhhhHhhh
Confidence 46679999998877543 2333332 36899999999842 1345666666642 234588999999999
Q ss_pred EEEcCCCCHHHHHHHHH
Q psy2406 353 RVELDSLSISDFTRIMT 369 (464)
Q Consensus 353 iV~f~~Lt~~el~~Il~ 369 (464)
+..+.+++...+.+|++
T Consensus 321 ~~yVG~Pt~~ai~~Ilk 337 (423)
T KOG0744|consen 321 VFYVGPPTAEAIYEILK 337 (423)
T ss_pred eeecCCccHHHHHHHHH
Confidence 99999999999999995
No 131
>KOG0742|consensus
Probab=99.37 E-value=3.4e-12 Score=131.88 Aligned_cols=131 Identities=16% Similarity=0.248 Sum_probs=78.2
Q ss_pred CcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCCe
Q psy2406 273 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 352 (464)
Q Consensus 273 ~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d~ 352 (464)
.=++||||.|.+...+....-+...+ ...|+||- +.|. ....++++.++ ++|.+|+.+.-.|||.
T Consensus 444 GLllFIDEADAFLceRnktymSEaqR-saLNAlLf---------RTGd-qSrdivLvlAt----NrpgdlDsAV~DRide 508 (630)
T KOG0742|consen 444 GLLLFIDEADAFLCERNKTYMSEAQR-SALNALLF---------RTGD-QSRDIVLVLAT----NRPGDLDSAVNDRIDE 508 (630)
T ss_pred ceEEEehhhHHHHHHhchhhhcHHHH-HHHHHHHH---------Hhcc-cccceEEEecc----CCccchhHHHHhhhhh
Confidence 45899999999876654311111111 23334441 1111 12234445554 6899999999999999
Q ss_pred EEEcCCCCHHHHHHHHHhhHHHHH---------HHHHHHHhhcCceeEeCH----HHHHHHHHHhhccccCCCccChhHH
Q psy2406 353 RVELDSLSISDFTRIMTSTNVCLT---------KQYEALLATEGIKIEFVD----DGIQRLAEIAYCINERTENIGARRL 419 (464)
Q Consensus 353 iV~f~~Lt~~el~~Il~~~~~~ll---------~~~~~ll~~~gi~L~~sd----eAl~~LA~~a~~~~~~~~~~GAR~L 419 (464)
+|+|+.+.+++..++|...++..+ -.+..+|....-+|++.. ..+...|+.. +.+..|-+
T Consensus 509 ~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkT-------eGfSGREi 581 (630)
T KOG0742|consen 509 VVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKT-------EGFSGREI 581 (630)
T ss_pred eeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhc-------cCCcHHHH
Confidence 999999999999999964322222 012233333334556554 3444444444 36788988
Q ss_pred HHHHHH
Q psy2406 420 YTAMEK 425 (464)
Q Consensus 420 ~r~IE~ 425 (464)
..++-.
T Consensus 582 akLva~ 587 (630)
T KOG0742|consen 582 AKLVAS 587 (630)
T ss_pred HHHHHH
Confidence 877643
No 132
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.37 E-value=3.5e-12 Score=130.61 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=92.1
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee-eeecCceeEeeccCCccc---cCCCCCchhhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHL---AKPSDLIPELQ 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~-~~i~Tsnil~I~ag~f~~---~~p~~f~PEfl 347 (464)
..+++||||||.+... +|..||.+|+.+.+.... ......++.+|++++... .....|+++|.
T Consensus 93 ~gGtL~Ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~ 159 (329)
T TIGR02974 93 DGGTLFLDELATASLL-------------VQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLL 159 (329)
T ss_pred CCCEEEeCChHhCCHH-------------HHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHH
Confidence 6899999999999754 788999999765433211 122345677888875332 22346999999
Q ss_pred ccCC-eEEEcCCCC--HHHHHHHHHhhHHHHHHHHHHHHhhcCce--eEeCHHHHHHHHHHhhccccCCCccChhHHHHH
Q psy2406 348 GRFP-IRVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIK--IEFVDDGIQRLAEIAYCINERTENIGARRLYTA 422 (464)
Q Consensus 348 ~R~d-~iV~f~~Lt--~~el~~Il~~~~~~ll~~~~~ll~~~gi~--L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~ 422 (464)
.|+. ..|.++||. .+|+..++ ..++.++.. ..|.. ..++++|++.|..+.. -+..|.|+++
T Consensus 160 ~rl~~~~i~lPpLReR~eDI~~L~----~~fl~~~~~---~~~~~~~~~ls~~a~~~L~~y~W-------PGNvrEL~n~ 225 (329)
T TIGR02974 160 DRLAFDVITLPPLRERQEDIMLLA----EHFAIRMAR---ELGLPLFPGFTPQAREQLLEYHW-------PGNVRELKNV 225 (329)
T ss_pred HHhcchhcCCCchhhhhhhHHHHH----HHHHHHHHH---HhCCCCCCCcCHHHHHHHHhCCC-------CchHHHHHHH
Confidence 9995 468899998 46666666 334444333 33444 4799999999987665 4789999999
Q ss_pred HHHHHH
Q psy2406 423 MEKLLE 428 (464)
Q Consensus 423 IE~~l~ 428 (464)
|++.+.
T Consensus 226 i~~~~~ 231 (329)
T TIGR02974 226 VERSVY 231 (329)
T ss_pred HHHHHH
Confidence 998765
No 133
>PRK05642 DNA replication initiation factor; Validated
Probab=99.36 E-value=1.1e-11 Score=121.00 Aligned_cols=132 Identities=18% Similarity=0.308 Sum_probs=87.4
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCC---CCchhhhc
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS---DLIPELQG 348 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~---~f~PEfl~ 348 (464)
...+++||+|+.+..... .+..|+.+++... .....++++++ ..|. .+.|.+.+
T Consensus 97 ~~d~LiiDDi~~~~~~~~-----------~~~~Lf~l~n~~~--------~~g~~ilits~----~~p~~l~~~~~~L~S 153 (234)
T PRK05642 97 QYELVCLDDLDVIAGKAD-----------WEEALFHLFNRLR--------DSGRRLLLAAS----KSPRELPIKLPDLKS 153 (234)
T ss_pred hCCEEEEechhhhcCChH-----------HHHHHHHHHHHHH--------hcCCEEEEeCC----CCHHHcCccCccHHH
Confidence 456999999998864321 3456777775210 11122333332 1222 34799999
Q ss_pred cC--CeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHH
Q psy2406 349 RF--PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 426 (464)
Q Consensus 349 R~--d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~ 426 (464)
|+ ..++.+++|+.+++.+|++. .+..++ +.++++++++|+++. ..++|.|..+++.+
T Consensus 154 Rl~~gl~~~l~~~~~e~~~~il~~-----------ka~~~~--~~l~~ev~~~L~~~~--------~~d~r~l~~~l~~l 212 (234)
T PRK05642 154 RLTLALVFQMRGLSDEDKLRALQL-----------RASRRG--LHLTDEVGHFILTRG--------TRSMSALFDLLERL 212 (234)
T ss_pred HHhcCeeeecCCCCHHHHHHHHHH-----------HHHHcC--CCCCHHHHHHHHHhc--------CCCHHHHHHHHHHH
Confidence 99 36688999999999999841 122334 588999999999998 46899999999987
Q ss_pred HHHHhcccCCCceeecHHHHHhHhC
Q psy2406 427 LEEVSFNSNNISLLVDADYVNSRLG 451 (464)
Q Consensus 427 l~~~l~~~~~~~v~I~~e~v~~~~~ 451 (464)
....+.. .-.||-+.+++.++
T Consensus 213 ~~~~l~~----~~~it~~~~~~~L~ 233 (234)
T PRK05642 213 DQASLQA----QRKLTIPFLKETLG 233 (234)
T ss_pred HHHHHHc----CCcCCHHHHHHHhc
Confidence 5433221 12478788877654
No 134
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.36 E-value=7.7e-13 Score=117.50 Aligned_cols=36 Identities=33% Similarity=0.382 Sum_probs=32.2
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEeecCcee
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFT 108 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~ 108 (464)
+|||+||||||||+||+.+|+.++.+++.+.++..+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~ 36 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDT 36 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTS
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEecccc
Confidence 489999999999999999999999999999887654
No 135
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.6e-11 Score=135.21 Aligned_cols=107 Identities=17% Similarity=0.371 Sum_probs=82.8
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+-||+|||+|.+... .++.||..||.- -.+++||++++ ++..+.|.+++|+.
T Consensus 121 ~~KVvIIdea~~Ls~~-------------a~naLLK~LEep----------p~~tifIL~tt----~~~kIl~tI~SRc~ 173 (614)
T PRK14971 121 KYKIYIIDEVHMLSQA-------------AFNAFLKTLEEP----------PSYAIFILATT----EKHKILPTILSRCQ 173 (614)
T ss_pred CcEEEEEECcccCCHH-------------HHHHHHHHHhCC----------CCCeEEEEEeC----CchhchHHHHhhhh
Confidence 4679999999999643 567999999852 23446666552 45678999999996
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 427 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l 427 (464)
. +.|.+++.+++...+. +.+..+|+ .+++++++.|+..+ +++.|.+.+.++++.
T Consensus 174 i-v~f~~ls~~ei~~~L~-----------~ia~~egi--~i~~~al~~La~~s--------~gdlr~al~~Lekl~ 227 (614)
T PRK14971 174 I-FDFNRIQVADIVNHLQ-----------YVASKEGI--TAEPEALNVIAQKA--------DGGMRDALSIFDQVV 227 (614)
T ss_pred e-eecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHH
Confidence 5 7999999999888774 23344565 78899999999988 478999999998764
No 136
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.35 E-value=5.1e-12 Score=136.85 Aligned_cols=130 Identities=18% Similarity=0.275 Sum_probs=92.0
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee-eeecCceeEeeccCCccc---cCCCCCchhhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHL---AKPSDLIPELQ 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~-~~i~Tsnil~I~ag~f~~---~~p~~f~PEfl 347 (464)
..+++||||||.+... +|..|+.+|+.+.+.... ......++.+|++++... .....|+++|.
T Consensus 290 ~~GtL~ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~ 356 (534)
T TIGR01817 290 DGGTLFLDEIGEISPA-------------FQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLY 356 (534)
T ss_pred CCCeEEEechhhCCHH-------------HHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHH
Confidence 5789999999999754 788999999755432211 111223566778765322 12346999999
Q ss_pred ccCCe-EEEcCCCC--HHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHH
Q psy2406 348 GRFPI-RVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 424 (464)
Q Consensus 348 ~R~d~-iV~f~~Lt--~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE 424 (464)
.|+.. .|.++||. .+|+..++. .++.++.. ..+..+.++++|++.|..+.. -+..|.|+++++
T Consensus 357 ~rl~~~~i~lPpLreR~eDi~~L~~----~~l~~~~~---~~~~~~~~s~~a~~~L~~~~W-------PGNvrEL~~v~~ 422 (534)
T TIGR01817 357 YRINVVPIFLPPLRERREDIPLLAE----AFLEKFNR---ENGRPLTITPSAIRVLMSCKW-------PGNVRELENCLE 422 (534)
T ss_pred HHhcCCeeeCCCcccccccHHHHHH----HHHHHHHH---HcCCCCCCCHHHHHHHHhCCC-------CChHHHHHHHHH
Confidence 99975 57899998 577877773 45555433 234446899999999997654 478999999999
Q ss_pred HHHH
Q psy2406 425 KLLE 428 (464)
Q Consensus 425 ~~l~ 428 (464)
+.+.
T Consensus 423 ~a~~ 426 (534)
T TIGR01817 423 RTAT 426 (534)
T ss_pred HHHH
Confidence 8764
No 137
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=8.4e-12 Score=130.81 Aligned_cols=88 Identities=20% Similarity=0.422 Sum_probs=64.4
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
++.|+||||+|++.+. .++.||+.||.. ..+.+||.++ +++..+.|.++||+
T Consensus 117 ~~kViiIDead~m~~~-------------aanaLLk~LEep----------~~~~~fIL~a----~~~~~llpTIrSRc- 168 (394)
T PRK07940 117 RWRIVVIEDADRLTER-------------AANALLKAVEEP----------PPRTVWLLCA----PSPEDVLPTIRSRC- 168 (394)
T ss_pred CcEEEEEechhhcCHH-------------HHHHHHHHhhcC----------CCCCeEEEEE----CChHHChHHHHhhC-
Confidence 5679999999999754 467999999852 2334555554 35788999999999
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 405 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~ 405 (464)
..+.|++|+.+++.+.+.. ..+ +++++...++..+.
T Consensus 169 ~~i~f~~~~~~~i~~~L~~--------------~~~----~~~~~a~~la~~s~ 204 (394)
T PRK07940 169 RHVALRTPSVEAVAEVLVR--------------RDG----VDPETARRAARASQ 204 (394)
T ss_pred eEEECCCCCHHHHHHHHHH--------------hcC----CCHHHHHHHHHHcC
Confidence 5689999999998877731 112 46777777776663
No 138
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.34 E-value=7.3e-12 Score=133.20 Aligned_cols=139 Identities=16% Similarity=0.270 Sum_probs=87.0
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
...|++||||+.+..... .|..|+.++.... .... .+|.+++.....-..+.+.+.+||.
T Consensus 202 ~~dvLiIDDiq~l~~k~~-----------~qeelf~l~N~l~--------~~~k-~IIlts~~~p~~l~~l~~rL~SR~~ 261 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGA-----------TQEEFFHTFNSLH--------TEGK-LIVISSTCAPQDLKAMEERLISRFE 261 (445)
T ss_pred cCCEEEEcchhhhcCChh-----------hHHHHHHHHHHHH--------HCCC-cEEEecCCCHHHHhhhHHHHHhhhc
Confidence 467999999999864321 3456666554211 0111 2233332111111247789999995
Q ss_pred --eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHH
Q psy2406 352 --IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 429 (464)
Q Consensus 352 --~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~ 429 (464)
.++.+.+|+.+++..|++. .+...+ +.++++++++||... ..+.|.|...++++...
T Consensus 262 ~Gl~~~l~~pd~e~r~~iL~~-----------k~~~~~--~~l~~evl~~la~~~--------~~dir~L~g~l~~l~~~ 320 (445)
T PRK12422 262 WGIAIPLHPLTKEGLRSFLER-----------KAEALS--IRIEETALDFLIEAL--------SSNVKSLLHALTLLAKR 320 (445)
T ss_pred CCeEEecCCCCHHHHHHHHHH-----------HHHHcC--CCCCHHHHHHHHHhc--------CCCHHHHHHHHHHHHHH
Confidence 7899999999999999851 222334 588999999999977 46899999999988533
Q ss_pred HhcccCCCceeecHHHHHhHhCC
Q psy2406 430 VSFNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 430 ~l~~~~~~~v~I~~e~v~~~~~~ 452 (464)
.++....+ ..||.+.++..+..
T Consensus 321 ~a~~~~~~-~~i~~~~~~~~l~~ 342 (445)
T PRK12422 321 VAYKKLSH-QLLYVDDIKALLHD 342 (445)
T ss_pred HHHHHhhC-CCCCHHHHHHHHHH
Confidence 33322111 23566666555544
No 139
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.33 E-value=2.2e-11 Score=117.17 Aligned_cols=133 Identities=17% Similarity=0.179 Sum_probs=85.8
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccC-
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF- 350 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~- 350 (464)
.+.+|+|||||.+... .|..|+.+++...- ....++|.++.. ......+.+.+.+|+
T Consensus 90 ~~~~liiDdi~~l~~~-------------~~~~L~~~~~~~~~--------~~~~~vl~~~~~-~~~~~~l~~~L~sr~~ 147 (227)
T PRK08903 90 EAELYAVDDVERLDDA-------------QQIALFNLFNRVRA--------HGQGALLVAGPA-APLALPLREDLRTRLG 147 (227)
T ss_pred cCCEEEEeChhhcCch-------------HHHHHHHHHHHHHH--------cCCcEEEEeCCC-CHHhCCCCHHHHHHHh
Confidence 3579999999987532 35577777753110 111123333321 011224778999998
Q ss_pred -CeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHH
Q psy2406 351 -PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 429 (464)
Q Consensus 351 -d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~ 429 (464)
...|.++||+.++...++. +.+..++ +.++++++++|++.. .+..|.|+++++.+-..
T Consensus 148 ~~~~i~l~pl~~~~~~~~l~-----------~~~~~~~--v~l~~~al~~L~~~~--------~gn~~~l~~~l~~l~~~ 206 (227)
T PRK08903 148 WGLVYELKPLSDADKIAALK-----------AAAAERG--LQLADEVPDYLLTHF--------RRDMPSLMALLDALDRY 206 (227)
T ss_pred cCeEEEecCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHhc--------cCCHHHHHHHHHHHHHH
Confidence 4689999999988776663 2233345 578999999999843 47889999999985432
Q ss_pred HhcccCCCceeecHHHHHhHhC
Q psy2406 430 VSFNSNNISLLVDADYVNSRLG 451 (464)
Q Consensus 430 ~l~~~~~~~v~I~~e~v~~~~~ 451 (464)
.+ . .+..||...+++.++
T Consensus 207 ~~---~-~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 207 SL---E-QKRPVTLPLLREMLA 224 (227)
T ss_pred HH---H-hCCCCCHHHHHHHHh
Confidence 21 1 123688888888765
No 140
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.31 E-value=6.6e-12 Score=129.28 Aligned_cols=108 Identities=17% Similarity=0.270 Sum_probs=65.1
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCcc--------ccCCCCCc
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFH--------LAKPSDLI 343 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~--------~~~p~~f~ 343 (464)
-|+|+||||+|-+..... ..|-..||... +- ++|++++.. ...|..++
T Consensus 278 vpGVLFIDEvHmLDiEcF-------------sfLnralEs~~----------sP-iiIlATNRg~~~irGt~~~sphGiP 333 (398)
T PF06068_consen 278 VPGVLFIDEVHMLDIECF-------------SFLNRALESEL----------SP-IIILATNRGITKIRGTDIISPHGIP 333 (398)
T ss_dssp EE-EEEEESGGGSBHHHH-------------HHHHHHHTSTT-------------EEEEEES-SEEE-BTTS-EEETT--
T ss_pred ecceEEecchhhccHHHH-------------HHHHHHhcCCC----------Cc-EEEEecCceeeeccCccCcCCCCCC
Confidence 379999999999865433 25556666421 11 334443322 12466788
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHH
Q psy2406 344 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 423 (464)
Q Consensus 344 PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~I 423 (464)
..||.|+ .+|.-.|++.+++.+|+. -++..+++ .++++|++.|++.+.. .+-|..-.+|
T Consensus 334 ~DlLDRl-lII~t~py~~~ei~~Il~-----------iR~~~E~v--~i~~~al~~L~~ig~~-------~SLRYAiqLi 392 (398)
T PF06068_consen 334 LDLLDRL-LIIRTKPYSEEEIKQILK-----------IRAKEEDV--EISEDALDLLTKIGVE-------TSLRYAIQLI 392 (398)
T ss_dssp HHHHTTE-EEEEE----HHHHHHHHH-----------HHHHHCT----B-HHHHHHHHHHHHH-------S-HHHHHHCH
T ss_pred cchHhhc-EEEECCCCCHHHHHHHHH-----------hhhhhhcC--cCCHHHHHHHHHHhhh-------ccHHHHHHhh
Confidence 8999999 568999999999999995 23445565 7889999999999974 6777655544
Q ss_pred H
Q psy2406 424 E 424 (464)
Q Consensus 424 E 424 (464)
.
T Consensus 393 ~ 393 (398)
T PF06068_consen 393 T 393 (398)
T ss_dssp H
T ss_pred h
Confidence 3
No 141
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.29 E-value=1.2e-10 Score=128.79 Aligned_cols=158 Identities=15% Similarity=0.212 Sum_probs=96.2
Q ss_pred hhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeee-eee--eecCceeEeeccCCccccCCCCCch
Q psy2406 268 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYG--IIKTDHILFIASGAFHLAKPSDLIP 344 (464)
Q Consensus 268 ~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~-~~~--~i~Tsnil~I~ag~f~~~~p~~f~P 344 (464)
..+ ..+|+|||||+++.+. +|+.||+.|+.+.+.+ +.+ .....++.+|++.+- ....|++
T Consensus 123 ~~A-~~GiL~lDEi~~l~~~-------------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np---~eg~l~~ 185 (633)
T TIGR02442 123 AEA-HRGILYIDEVNLLDDH-------------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNP---EEGDLRP 185 (633)
T ss_pred eec-CCCeEEeChhhhCCHH-------------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCC---CCCCCCH
Confidence 344 6789999999999754 7889999998554332 222 223356677887531 1235899
Q ss_pred hhhccCCeEEEcCCCC-HHHHHHHHHhhHH------HHHH-------HH-HHHH--hhcCceeEeCHHHHHHHHHHhhcc
Q psy2406 345 ELQGRFPIRVELDSLS-ISDFTRIMTSTNV------CLTK-------QY-EALL--ATEGIKIEFVDDGIQRLAEIAYCI 407 (464)
Q Consensus 345 Efl~R~d~iV~f~~Lt-~~el~~Il~~~~~------~ll~-------~~-~~ll--~~~gi~L~~sdeAl~~LA~~a~~~ 407 (464)
+|+.||+..|.+.++. .++..+|+..... .+.. .. .... ...--.+.++++++++|+..+...
T Consensus 186 ~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~ 265 (633)
T TIGR02442 186 QLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEF 265 (633)
T ss_pred HHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHh
Confidence 9999999988888775 4556666642110 0000 00 0001 111113678999999999999765
Q ss_pred ccCCCcc-ChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHh
Q psy2406 408 NERTENI-GARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRL 450 (464)
Q Consensus 408 ~~~~~~~-GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~ 450 (464)
+. |.|....++.-. . .+..+... -.|+.++|+.+.
T Consensus 266 -----~i~s~Ra~i~~~r~A-r-a~AaL~gr-~~V~~~Dv~~A~ 301 (633)
T TIGR02442 266 -----GVDGHRADIVMARAA-R-ALAALDGR-RRVTAEDVREAA 301 (633)
T ss_pred -----CCCCccHHHHHHHHH-H-HHHHHcCC-CcCCHHHHHHHH
Confidence 33 677766655422 1 12223322 367888887653
No 142
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.29 E-value=7.7e-11 Score=126.96 Aligned_cols=160 Identities=13% Similarity=0.164 Sum_probs=98.3
Q ss_pred hhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeee-eee--eecCceeEeeccCCccc----cC--
Q psy2406 268 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYG--IIKTDHILFIASGAFHL----AK-- 338 (464)
Q Consensus 268 ~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~-~~~--~i~Tsnil~I~ag~f~~----~~-- 338 (464)
..| ..+|+|||||+.+.+. +|+.|++.||.+.++. +.+ .....++.+|++++.-. ..
T Consensus 292 ~lA-~~GvLfLDEi~e~~~~-------------~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~ 357 (499)
T TIGR00368 292 SLA-HNGVLFLDELPEFKRS-------------VLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKN 357 (499)
T ss_pred hcc-CCCeEecCChhhCCHH-------------HHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCc
Confidence 455 7899999999988654 7889999998776543 211 22335667777654210 00
Q ss_pred ------C-------CCCchhhhccCCeEEEcCCCCHHHHHH---------HHHhhHHHHHHHHHHHHhhc-Cce------
Q psy2406 339 ------P-------SDLIPELQGRFPIRVELDSLSISDFTR---------IMTSTNVCLTKQYEALLATE-GIK------ 389 (464)
Q Consensus 339 ------p-------~~f~PEfl~R~d~iV~f~~Lt~~el~~---------Il~~~~~~ll~~~~~ll~~~-gi~------ 389 (464)
+ ..+.++|++|||.++.+++++.+++.+ |-++.......+ .+++... ++.
T Consensus 358 ~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q-~~R~~~~~~~~~N~~l~ 436 (499)
T TIGR00368 358 THCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQ-NIRYEKFANINKNADLN 436 (499)
T ss_pred ccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHH-HHHhcCCCCCcccccCC
Confidence 0 138899999999999999998776532 111110111111 1122111 011
Q ss_pred -------eEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHh
Q psy2406 390 -------IEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRL 450 (464)
Q Consensus 390 -------L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~ 450 (464)
..+++++.+.+.+..... ..++|...+++. + ...+.++...+ .|+.++|.+++
T Consensus 437 ~~~l~~~~~l~~~~~~~l~~a~~~~-----~lS~R~~~rilr-v-ArTiAdL~g~~-~i~~~hv~eA~ 496 (499)
T TIGR00368 437 SDEIEQFCKLSAIDANDLEGALNKL-----GLSSRATHRILK-V-ARTIADLKEEK-NISREHLAEAI 496 (499)
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHhc-----CCCchHHHHHHH-H-HHHHHhhcCCC-CCCHHHHHHHH
Confidence 345788888777666554 689999999885 2 22344555443 68889987765
No 143
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.29 E-value=9.3e-11 Score=119.84 Aligned_cols=85 Identities=16% Similarity=0.144 Sum_probs=60.4
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhcccc-Cceeeeee--eee-cCceeEeeccCCccc-c-------CC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVE-GTTVNTKY--GII-KTDHILFIASGAFHL-A-------KP 339 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLE-G~~v~~~~--~~i-~Tsnil~I~ag~f~~-~-------~p 339 (464)
.++++|+||||.+.++ ++..|+.+|| ++.+.... ..+ .-.+..+|+|.+-.. . -.
T Consensus 134 ~g~illlDEin~a~p~-------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt 200 (327)
T TIGR01650 134 HNVALCFDEYDAGRPD-------------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGT 200 (327)
T ss_pred CCeEEEechhhccCHH-------------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeee
Confidence 4688999999999765 6778888998 45554422 233 233566777764211 0 01
Q ss_pred CCCchhhhccCCeEEEcCCCCHHHHHHHHH
Q psy2406 340 SDLIPELQGRFPIRVELDSLSISDFTRIMT 369 (464)
Q Consensus 340 ~~f~PEfl~R~d~iV~f~~Lt~~el~~Il~ 369 (464)
..++.++++||-.++.+..++.++-.+|+.
T Consensus 201 ~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~ 230 (327)
T TIGR01650 201 QQINQAQMDRWSIVTTLNYLEHDNEAAIVL 230 (327)
T ss_pred ecCCHHHHhheeeEeeCCCCCHHHHHHHHH
Confidence 247899999998878899999999999985
No 144
>PHA02244 ATPase-like protein
Probab=99.28 E-value=9.9e-11 Score=121.27 Aligned_cols=116 Identities=16% Similarity=0.160 Sum_probs=71.6
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeee-cCceeEeeccCCccc-------cCCCCCc
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII-KTDHILFIASGAFHL-------AKPSDLI 343 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i-~Tsnil~I~ag~f~~-------~~p~~f~ 343 (464)
.+++++||||+.+.++ ++..|+.+++++.+......+ .-.+..+|+|++... .....+.
T Consensus 180 ~GgvLiLDEId~a~p~-------------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~ 246 (383)
T PHA02244 180 KGGLFFIDEIDASIPE-------------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKID 246 (383)
T ss_pred cCCEEEEeCcCcCCHH-------------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccC
Confidence 6789999999999865 666888889876555433222 234566777664211 0124589
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHHhh--HHHHHHHHHHHHhhcCceeEeCHHHHHHHHH
Q psy2406 344 PELQGRFPIRVELDSLSISDFTRIMTST--NVCLTKQYEALLATEGIKIEFVDDGIQRLAE 402 (464)
Q Consensus 344 PEfl~R~d~iV~f~~Lt~~el~~Il~~~--~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~ 402 (464)
+++++||- .|.|..+++-+. .|+... .-.+...+++.+..+++...++.-++-..|+
T Consensus 247 ~AllDRFv-~I~~dyp~~~E~-~i~~~~~~lv~~a~~lR~~~~~~~l~~~~StR~li~~a~ 305 (383)
T PHA02244 247 GATLDRFA-PIEFDYDEKIEH-LISNGDEDLVNFVALLRHEMAEKGLDHVFSMRAIIHGKK 305 (383)
T ss_pred HHHHhhcE-EeeCCCCcHHHH-HHhhhHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHH
Confidence 99999995 589999985444 333211 1112222333344577777777665555555
No 145
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.28 E-value=2.4e-11 Score=123.98 Aligned_cols=66 Identities=20% Similarity=0.153 Sum_probs=51.7
Q ss_pred cCchhHhhhhhhcchhHHHHhhhhhcccccccCCCCCCccccccCCCcceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 25 APSANNLRNKFGIRKAILKASVYIDAPNTRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 25 ~~~~~~~l~~~~igq~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
.........+..+|++.....+..++... +++||.||||||||+||+.+|+.++.+|+++.|
T Consensus 15 ~~~~~~~~~~~~~g~~~~~~~~l~a~~~~------------------~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~ 76 (329)
T COG0714 15 LGKIRSELEKVVVGDEEVIELALLALLAG------------------GHVLLEGPPGVGKTLLARALARALGLPFVRIQC 76 (329)
T ss_pred HHHHHhhcCCeeeccHHHHHHHHHHHHcC------------------CCEEEECCCCccHHHHHHHHHHHhCCCeEEEec
Confidence 33445555666788888777766643332 569999999999999999999999999999999
Q ss_pred Ccee
Q psy2406 105 TKFT 108 (464)
Q Consensus 105 s~~~ 108 (464)
+...
T Consensus 77 t~~l 80 (329)
T COG0714 77 TPDL 80 (329)
T ss_pred CCCC
Confidence 7654
No 146
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.27 E-value=1.8e-11 Score=129.98 Aligned_cols=114 Identities=22% Similarity=0.341 Sum_probs=75.8
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCC---CCchhhhc
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS---DLIPELQG 348 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~---~f~PEfl~ 348 (464)
.+.|++|||++.+.... +.|..|+.++.... .....+++.+. ..|. .+.+.+.+
T Consensus 194 ~~dvLlIDDi~~l~~~~-----------~~q~elf~~~n~l~--------~~~k~iIitsd----~~p~~l~~l~~rL~S 250 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKT-----------GVQTELFHTFNELH--------DSGKQIVICSD----REPQKLSEFQDRLVS 250 (440)
T ss_pred cCCEEEEechhhhcCcH-----------HHHHHHHHHHHHHH--------HcCCeEEEECC----CCHHHHHHHHHHHhh
Confidence 46899999999885431 24455666554211 11112333321 1333 36678889
Q ss_pred cCC--eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHH
Q psy2406 349 RFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 426 (464)
Q Consensus 349 R~d--~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~ 426 (464)
||. .++.+++++.+.+..|++ +.+..++ +.++++++++||+.. ...+|.|..++.++
T Consensus 251 R~~~gl~v~i~~pd~e~r~~IL~-----------~~~~~~~--~~l~~ev~~~Ia~~~--------~~~~R~L~g~l~~l 309 (440)
T PRK14088 251 RFQMGLVAKLEPPDEETRKKIAR-----------KMLEIEH--GELPEEVLNFVAENV--------DDNLRRLRGAIIKL 309 (440)
T ss_pred HHhcCceEeeCCCCHHHHHHHHH-----------HHHHhcC--CCCCHHHHHHHHhcc--------ccCHHHHHHHHHHH
Confidence 984 467999999999999984 2233344 468999999999888 46899999999887
Q ss_pred HHH
Q psy2406 427 LEE 429 (464)
Q Consensus 427 l~~ 429 (464)
...
T Consensus 310 ~~~ 312 (440)
T PRK14088 310 LVY 312 (440)
T ss_pred HHH
Confidence 543
No 147
>PRK06620 hypothetical protein; Validated
Probab=99.26 E-value=5.3e-11 Score=114.99 Aligned_cols=83 Identities=13% Similarity=0.107 Sum_probs=61.2
Q ss_pred CchhhhccCC--eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHH
Q psy2406 342 LIPELQGRFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRL 419 (464)
Q Consensus 342 f~PEfl~R~d--~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L 419 (464)
+ |.+++|+. .++.+++|+.+++..++. +.+..+| +.++++++++|+++. ..++|.+
T Consensus 129 l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~-----------k~~~~~~--l~l~~ev~~~L~~~~--------~~d~r~l 186 (214)
T PRK06620 129 L-PDLSSRIKSVLSILLNSPDDELIKILIF-----------KHFSISS--VTISRQIIDFLLVNL--------PREYSKI 186 (214)
T ss_pred h-HHHHHHHhCCceEeeCCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHHc--------cCCHHHH
Confidence 5 89999996 257999999999888874 2223344 578999999999998 4789999
Q ss_pred HHHHHHHHHHHhcccCCCceeecHHHHHhHh
Q psy2406 420 YTAMEKLLEEVSFNSNNISLLVDADYVNSRL 450 (464)
Q Consensus 420 ~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~ 450 (464)
.++++.+-.... .. ...||.+.+++.+
T Consensus 187 ~~~l~~l~~~~~--~~--~~~it~~~~~~~l 213 (214)
T PRK06620 187 IEILENINYFAL--IS--KRKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHHHHH--Hc--CCCCCHHHHHHHh
Confidence 999998532221 11 1357888887754
No 148
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.26 E-value=6.5e-11 Score=130.37 Aligned_cols=159 Identities=18% Similarity=0.277 Sum_probs=96.1
Q ss_pred HHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeee-------ee----cCceeEeeccC
Q psy2406 264 QKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-------II----KTDHILFIASG 332 (464)
Q Consensus 264 ~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~-------~i----~Tsnil~I~ag 332 (464)
..++.+| ..+++||||++.+.+. .|+.|+.+|+.+.+..... .+ ...++.+|+++
T Consensus 210 ~G~L~~A-ngGtL~Ldei~~L~~~-------------~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~ 275 (608)
T TIGR00764 210 AGAIHRA-HKGVLYIDEIKTMPLE-------------VQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASG 275 (608)
T ss_pred CCceEEC-CCCEEEEEChHhCCHH-------------HHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEEC
Confidence 3455677 7899999999999743 7789999997655543211 11 12355677776
Q ss_pred CccccCCCCCchhhhccCC---eEEEcCC---CCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhc
Q psy2406 333 AFHLAKPSDLIPELQGRFP---IRVELDS---LSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 406 (464)
Q Consensus 333 ~f~~~~p~~f~PEfl~R~d---~iV~f~~---Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~ 406 (464)
+.. .-..++|+|+.||+ ..+.|+. .+.+...+++. .+.+.+..+|....++++|+..|.+.+..
T Consensus 276 ~~~--~l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~--------~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 276 NLD--DLEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQ--------FVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred CHH--HHhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHH--------HHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 421 12369999999999 7777754 35666666552 22233344544458999999999987653
Q ss_pred cccCCC--ccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhH
Q psy2406 407 INERTE--NIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSR 449 (464)
Q Consensus 407 ~~~~~~--~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~ 449 (464)
...... ..-.|.|.+++... ... .... ....|+.++|+++
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A-~~i-A~~~-~~~~I~~ehV~~A 387 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAA-GDI-AKSS-GKVYVTAEHVLKA 387 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHH-HHH-HHhc-CCceecHHHHHHH
Confidence 200000 01245555555543 111 1112 3357999999864
No 149
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.26 E-value=5.7e-11 Score=126.60 Aligned_cols=141 Identities=15% Similarity=0.238 Sum_probs=90.3
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
...|++||||+.+.... ..|..|..++.... .....+ |.++......-..+.+.+.+||.
T Consensus 206 ~~dvLiIDDiq~l~~k~-----------~~~e~lf~l~N~~~--------~~~k~i-Iltsd~~P~~l~~l~~rL~SR~~ 265 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKE-----------KTNEIFFTIFNNFI--------ENDKQL-FFSSDKSPELLNGFDNRLITRFN 265 (450)
T ss_pred cCCEEEEeccccccCCH-----------HHHHHHHHHHHHHH--------HcCCcE-EEECCCCHHHHhhccHHHHHHHh
Confidence 56799999999886431 24556666665211 011112 22221111111246788999994
Q ss_pred --eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHH
Q psy2406 352 --IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 429 (464)
Q Consensus 352 --~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~ 429 (464)
.++.+++|+.+++.+|++ +.+...|..+.++++++++||..+ .+.+|.|..++.+++..
T Consensus 266 ~Gl~~~L~~pd~e~r~~iL~-----------~~~~~~gl~~~l~~evl~~Ia~~~--------~gd~R~L~gaL~~l~~~ 326 (450)
T PRK14087 266 MGLSIAIQKLDNKTATAIIK-----------KEIKNQNIKQEVTEEAINFISNYY--------SDDVRKIKGSVSRLNFW 326 (450)
T ss_pred CCceeccCCcCHHHHHHHHH-----------HHHHhcCCCCCCCHHHHHHHHHcc--------CCCHHHHHHHHHHHHHH
Confidence 778999999999999995 223344655589999999999988 57899999999988744
Q ss_pred HhcccCCCceeecHHHHHhHhCCC
Q psy2406 430 VSFNSNNISLLVDADYVNSRLGDL 453 (464)
Q Consensus 430 ~l~~~~~~~v~I~~e~v~~~~~~~ 453 (464)
...... ...||.+.++..+...
T Consensus 327 a~~~~~--~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 327 SQQNPE--EKIITIEIVSDLFRDI 348 (450)
T ss_pred HhcccC--CCCCCHHHHHHHHhhc
Confidence 332211 1246777776666543
No 150
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.25 E-value=1.6e-10 Score=118.82 Aligned_cols=158 Identities=14% Similarity=0.212 Sum_probs=95.8
Q ss_pred hhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeee-eeee--ecCceeEeeccCCccccCCCCCch
Q psy2406 268 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGI--IKTDHILFIASGAFHLAKPSDLIP 344 (464)
Q Consensus 268 ~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~-~~~~--i~Tsnil~I~ag~f~~~~p~~f~P 344 (464)
.++ ..+++|+|||+.+.++ +|+.|++.|+.+.+.. +.|. -...++++|++++- ....+++
T Consensus 125 ~~A-~~GiL~lDEInrl~~~-------------~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP---~e~~l~~ 187 (334)
T PRK13407 125 ARA-NRGYLYIDEVNLLEDH-------------IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNP---EEGELRP 187 (334)
T ss_pred EEc-CCCeEEecChHhCCHH-------------HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCc---ccCCCCH
Confidence 344 5689999999999754 7889999997654432 2221 12345566666531 1124889
Q ss_pred hhhccCCeEEEcCCCCH-HHHHHHHHhhHHH------HH-----------HHHHHHHhhcCceeEeCHHHHHHHHHHhhc
Q psy2406 345 ELQGRFPIRVELDSLSI-SDFTRIMTSTNVC------LT-----------KQYEALLATEGIKIEFVDDGIQRLAEIAYC 406 (464)
Q Consensus 345 Efl~R~d~iV~f~~Lt~-~el~~Il~~~~~~------ll-----------~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~ 406 (464)
+++.||...|.+.++.. ++..+|+...... .. .++.. ....=-.+.++++++++|++.+..
T Consensus 188 aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-a~~~~~~V~v~~~~~~yi~~l~~~ 266 (334)
T PRK13407 188 QLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILG-ARARLPQLKTPNTVLHDCAALCIA 266 (334)
T ss_pred HHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHH-HHHhcCCcccCHHHHHHHHHHHHH
Confidence 99999999999988877 7778888642110 00 11111 111112468899999999999875
Q ss_pred cccCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHh
Q psy2406 407 INERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRL 450 (464)
Q Consensus 407 ~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~ 450 (464)
. ...|-|.-..++... . ....-.+.-.|+.++|+...
T Consensus 267 ~----~~~s~Ra~i~l~~aA-~--a~A~l~Gr~~V~~~Di~~~~ 303 (334)
T PRK13407 267 L----GSDGLRGELTLLRAA-R--ALAAFEGAEAVGRSHLRSVA 303 (334)
T ss_pred H----CCCCchHHHHHHHHH-H--HHHHHcCCCeeCHHHHHHHH
Confidence 3 123666555543321 1 11122233468999987654
No 151
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.25 E-value=5.9e-11 Score=129.75 Aligned_cols=116 Identities=13% Similarity=0.191 Sum_probs=77.3
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccC-
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF- 350 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~- 350 (464)
..+||+||+|+.+.... ..|..|+.+++... ....-++| ++......-..+.+.|.+||
T Consensus 377 ~~DLLlIDDIq~l~gke-----------~tqeeLF~l~N~l~--------e~gk~III-TSd~~P~eL~~l~~rL~SRf~ 436 (617)
T PRK14086 377 EMDILLVDDIQFLEDKE-----------STQEEFFHTFNTLH--------NANKQIVL-SSDRPPKQLVTLEDRLRNRFE 436 (617)
T ss_pred cCCEEEEehhccccCCH-----------HHHHHHHHHHHHHH--------hcCCCEEE-ecCCChHhhhhccHHHHhhhh
Confidence 46899999999986432 23456666665321 11111222 32211111124678899999
Q ss_pred -CeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHH
Q psy2406 351 -PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 428 (464)
Q Consensus 351 -d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~ 428 (464)
..++.+.+++.+.+..||. +.+..++ +.++++++++|+++.. ...|.|..+|.++..
T Consensus 437 ~GLvv~I~~PD~EtR~aIL~-----------kka~~r~--l~l~~eVi~yLa~r~~--------rnvR~LegaL~rL~a 494 (617)
T PRK14086 437 WGLITDVQPPELETRIAILR-----------KKAVQEQ--LNAPPEVLEFIASRIS--------RNIRELEGALIRVTA 494 (617)
T ss_pred cCceEEcCCCCHHHHHHHHH-----------HHHHhcC--CCCCHHHHHHHHHhcc--------CCHHHHHHHHHHHHH
Confidence 6788999999999999984 2233344 5888999999999873 568999999988754
No 152
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.24 E-value=7.5e-11 Score=127.31 Aligned_cols=131 Identities=17% Similarity=0.190 Sum_probs=89.7
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee-eeecCceeEeeccCCccc---cCCCCCchhhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHL---AKPSDLIPELQ 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~-~~i~Tsnil~I~ag~f~~---~~p~~f~PEfl 347 (464)
..+.+||||||.+... +|..|+.+|+.+.+.... ......++-+|++++... .....|++.|.
T Consensus 281 ~gGtL~ldeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~ 347 (509)
T PRK05022 281 DGGTLFLDEIGELPLA-------------LQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLY 347 (509)
T ss_pred CCCEEEecChhhCCHH-------------HHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHH
Confidence 6889999999999754 778999999755432111 111224567788775432 22346999999
Q ss_pred ccCCeE-EEcCCCCH--HHHHHHHHhhHHHHHHHHHHHHhhcC-ceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHH
Q psy2406 348 GRFPIR-VELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEG-IKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 423 (464)
Q Consensus 348 ~R~d~i-V~f~~Lt~--~el~~Il~~~~~~ll~~~~~ll~~~g-i~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~I 423 (464)
.|+... |.++||.+ +|+..++ ..+++++... .| -.+.++++|+..|..+.. -+..|-|+++|
T Consensus 348 ~rl~~~~i~lPpLreR~eDI~~L~----~~fl~~~~~~---~~~~~~~~s~~a~~~L~~y~W-------PGNvrEL~~~i 413 (509)
T PRK05022 348 HRLSVFPLSVPPLRERGDDVLLLA----GYFLEQNRAR---LGLRSLRLSPAAQAALLAYDW-------PGNVRELEHVI 413 (509)
T ss_pred hcccccEeeCCCchhchhhHHHHH----HHHHHHHHHH---cCCCCCCCCHHHHHHHHhCCC-------CCcHHHHHHHH
Confidence 999754 78888886 3555554 3445444332 23 346899999999987665 47899999999
Q ss_pred HHHHHH
Q psy2406 424 EKLLEE 429 (464)
Q Consensus 424 E~~l~~ 429 (464)
++.+..
T Consensus 414 ~ra~~~ 419 (509)
T PRK05022 414 SRAALL 419 (509)
T ss_pred HHHHHh
Confidence 987653
No 153
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.23 E-value=6.4e-11 Score=114.66 Aligned_cols=116 Identities=24% Similarity=0.345 Sum_probs=73.3
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
...+++||.||.+... ...|..|..+++... .....+++++ ......-..+.|.+.+|+.
T Consensus 97 ~~DlL~iDDi~~l~~~-----------~~~q~~lf~l~n~~~--------~~~k~li~ts-~~~P~~l~~~~~~L~SRl~ 156 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGK-----------QRTQEELFHLFNRLI--------ESGKQLILTS-DRPPSELSGLLPDLRSRLS 156 (219)
T ss_dssp TSSEEEEETGGGGTTH-----------HHHHHHHHHHHHHHH--------HTTSEEEEEE-SS-TTTTTTS-HHHHHHHH
T ss_pred cCCEEEEecchhhcCc-----------hHHHHHHHHHHHHHH--------hhCCeEEEEe-CCCCccccccChhhhhhHh
Confidence 5789999999998643 235778887776311 1112223332 2111122247788999986
Q ss_pred e--EEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHH
Q psy2406 352 I--RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 428 (464)
Q Consensus 352 ~--iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~ 428 (464)
- ++.+.+|+.+++.+|+. +....+|+ .++++++++|++.. ....|.|..+|.++..
T Consensus 157 ~Gl~~~l~~pd~~~r~~il~-----------~~a~~~~~--~l~~~v~~~l~~~~--------~~~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 157 WGLVVELQPPDDEDRRRILQ-----------KKAKERGI--ELPEEVIEYLARRF--------RRDVRELEGALNRLDA 214 (219)
T ss_dssp CSEEEEE----HHHHHHHHH-----------HHHHHTT----S-HHHHHHHHHHT--------TSSHHHHHHHHHHHHH
T ss_pred hcchhhcCCCCHHHHHHHHH-----------HHHHHhCC--CCcHHHHHHHHHhh--------cCCHHHHHHHHHHHHH
Confidence 5 88999999999999984 33445666 58999999999987 3578999999987643
No 154
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.23 E-value=4.8e-11 Score=111.78 Aligned_cols=86 Identities=17% Similarity=0.394 Sum_probs=65.8
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
++.||+|||+|++... .++.||..||.. ..+..||+++ +++..+.|++.+|+.
T Consensus 96 ~~kviiide~~~l~~~-------------~~~~Ll~~le~~----------~~~~~~il~~----~~~~~l~~~i~sr~~ 148 (188)
T TIGR00678 96 GRRVVIIEDAERMNEA-------------AANALLKTLEEP----------PPNTLFILIT----PSPEKLLPTIRSRCQ 148 (188)
T ss_pred CeEEEEEechhhhCHH-------------HHHHHHHHhcCC----------CCCeEEEEEE----CChHhChHHHHhhcE
Confidence 5679999999999753 466899999852 2334555544 245678899999995
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 404 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a 404 (464)
++.|.+++.+++.+++.. +| ++++++..|+..+
T Consensus 149 -~~~~~~~~~~~~~~~l~~---------------~g----i~~~~~~~i~~~~ 181 (188)
T TIGR00678 149 -VLPFPPLSEEALLQWLIR---------------QG----ISEEAAELLLALA 181 (188)
T ss_pred -EeeCCCCCHHHHHHHHHH---------------cC----CCHHHHHHHHHHc
Confidence 689999999999888741 13 6799999999887
No 155
>PRK04132 replication factor C small subunit; Provisional
Probab=99.22 E-value=1.5e-10 Score=130.81 Aligned_cols=107 Identities=27% Similarity=0.374 Sum_probs=84.1
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
++.||+|||+|++... .|+.||..||- ...++.||+++ +++..+.|+++|||-
T Consensus 630 ~~KVvIIDEaD~Lt~~-------------AQnALLk~lEe----------p~~~~~FILi~----N~~~kIi~tIrSRC~ 682 (846)
T PRK04132 630 SFKIIFLDEADALTQD-------------AQQALRRTMEM----------FSSNVRFILSC----NYSSKIIEPIQSRCA 682 (846)
T ss_pred CCEEEEEECcccCCHH-------------HHHHHHHHhhC----------CCCCeEEEEEe----CChhhCchHHhhhce
Confidence 4679999999999743 67899999994 23455677765 467788999999995
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 427 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l 427 (464)
++.|++++.+++..++. ..+..+|+ .++++++..|++.+ ++++|...+.+|.+.
T Consensus 683 -~i~F~~ls~~~i~~~L~-----------~I~~~Egi--~i~~e~L~~Ia~~s--------~GDlR~AIn~Lq~~~ 736 (846)
T PRK04132 683 -IFRFRPLRDEDIAKRLR-----------YIAENEGL--ELTEEGLQAILYIA--------EGDMRRAINILQAAA 736 (846)
T ss_pred -EEeCCCCCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHH
Confidence 57999999999888874 22334454 67899999999888 578999999988654
No 156
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=1.1e-10 Score=120.77 Aligned_cols=102 Identities=16% Similarity=0.264 Sum_probs=73.7
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+-||+|||+|.+... .++.||+.||.. ..+.+||..+ .+|..+.|.+++|+
T Consensus 141 ~~rVviIDeAd~l~~~-------------aanaLLk~LEEp----------p~~~~fiLit----~~~~~llptIrSRc- 192 (351)
T PRK09112 141 NWRIVIIDPADDMNRN-------------AANAILKTLEEP----------PARALFILIS----HSSGRLLPTIRSRC- 192 (351)
T ss_pred CceEEEEEchhhcCHH-------------HHHHHHHHHhcC----------CCCceEEEEE----CChhhccHHHHhhc-
Confidence 5679999999999754 567999999852 2334444443 35777889999999
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 424 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE 424 (464)
.++.|.||+.+++..++.. .+....++++++..+++.+ .+..|...++++
T Consensus 193 ~~i~l~pl~~~~~~~~L~~---------------~~~~~~~~~~~~~~i~~~s--------~G~pr~Al~ll~ 242 (351)
T PRK09112 193 QPISLKPLDDDELKKALSH---------------LGSSQGSDGEITEALLQRS--------KGSVRKALLLLN 242 (351)
T ss_pred cEEEecCCCHHHHHHHHHH---------------hhcccCCCHHHHHHHHHHc--------CCCHHHHHHHHh
Confidence 5789999999999998841 1222237788888888766 456666666663
No 157
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.21 E-value=2.7e-10 Score=117.24 Aligned_cols=158 Identities=16% Similarity=0.223 Sum_probs=93.8
Q ss_pred hhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeee-eeee--ecCceeEeeccCCccccCCCCCch
Q psy2406 268 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGI--IKTDHILFIASGAFHLAKPSDLIP 344 (464)
Q Consensus 268 ~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~-~~~~--i~Tsnil~I~ag~f~~~~p~~f~P 344 (464)
.++ ..+++|||||+.+.+. +|+.||+.|+.+.+.+ +.|. -...++++|++.+- ....|+|
T Consensus 128 ~~A-~~GvL~lDEi~~L~~~-------------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np---~eg~l~~ 190 (337)
T TIGR02030 128 ARA-NRGILYIDEVNLLEDH-------------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNP---EEGELRP 190 (337)
T ss_pred eec-cCCEEEecChHhCCHH-------------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEecccc---ccCCCCH
Confidence 344 6799999999998654 7889999997543322 2222 12345566666531 1235999
Q ss_pred hhhccCCeEEEcCCCCH-HHHHHHHHhhHHH------HHHHH--------HHHH--hhcCceeEeCHHHHHHHHHHhhcc
Q psy2406 345 ELQGRFPIRVELDSLSI-SDFTRIMTSTNVC------LTKQY--------EALL--ATEGIKIEFVDDGIQRLAEIAYCI 407 (464)
Q Consensus 345 Efl~R~d~iV~f~~Lt~-~el~~Il~~~~~~------ll~~~--------~~ll--~~~gi~L~~sdeAl~~LA~~a~~~ 407 (464)
+|+.||...+.+.++.. ++..+|++..... ....+ ...+ +..=-.+.++++++++|++.+..-
T Consensus 191 ~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~ 270 (337)
T TIGR02030 191 QLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAEL 270 (337)
T ss_pred HHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHH
Confidence 99999999999999986 7778888642110 00000 1111 111134678999999999988653
Q ss_pred ccCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhH
Q psy2406 408 NERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSR 449 (464)
Q Consensus 408 ~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~ 449 (464)
. .-|=|....++.-.- . +..-.+.-.|+.++|+..
T Consensus 271 ~----~~s~Ra~i~l~raAr-A--~Aal~GR~~V~~dDv~~~ 305 (337)
T TIGR02030 271 D----VDGLRGELTLNRAAK-A--LAAFEGRTEVTVDDIRRV 305 (337)
T ss_pred C----CCCCcHHHHHHHHHH-H--HHHHcCCCCCCHHHHHHH
Confidence 1 114465544443221 1 111222346788888754
No 158
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.19 E-value=6.5e-11 Score=123.76 Aligned_cols=135 Identities=16% Similarity=0.229 Sum_probs=94.7
Q ss_pred hhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee-eeecCceeEeeccCCccccCCCCCch--
Q psy2406 268 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHLAKPSDLIP-- 344 (464)
Q Consensus 268 ~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~-~~i~Tsnil~I~ag~f~~~~p~~f~P-- 344 (464)
+.| ..+++|+|||+.+.+. +|..||.+||.+.+.--+ ......++.+|||++... +..+..
T Consensus 170 e~A-~GGtLfLDEI~~LP~~-------------~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l--~~~~~~g~ 233 (403)
T COG1221 170 EQA-NGGTLFLDEIHRLPPE-------------GQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDL--EEAVLAGA 233 (403)
T ss_pred eec-CCCEEehhhhhhCCHh-------------HHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCH--HHHHHhhc
Confidence 455 7899999999999765 677999999976654322 245677888999985321 123444
Q ss_pred hhhc-cCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCH-HHHHHHHHHhhccccCCCccChhHHHHH
Q psy2406 345 ELQG-RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVD-DGIQRLAEIAYCINERTENIGARRLYTA 422 (464)
Q Consensus 345 Efl~-R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sd-eAl~~LA~~a~~~~~~~~~~GAR~L~r~ 422 (464)
.|.. |+..+|.++||.+. ...|+... ...++ ..+...+..+.... +++..|..+.+ -+..|-|++.
T Consensus 234 dl~~rl~~~~I~LPpLrER-~~Di~~L~-e~Fl~---~~~~~l~~~~~~~~~~a~~~L~~y~~-------pGNirELkN~ 301 (403)
T COG1221 234 DLTRRLNILTITLPPLRER-KEDILLLA-EHFLK---SEARRLGLPLSVDSPEALRALLAYDW-------PGNIRELKNL 301 (403)
T ss_pred chhhhhcCceecCCChhhc-hhhHHHHH-HHHHH---HHHHHcCCCCCCCCHHHHHHHHhCCC-------CCcHHHHHHH
Confidence 6666 89999999999988 77776422 22333 33344566655554 88988876655 4788999999
Q ss_pred HHHHHHHH
Q psy2406 423 MEKLLEEV 430 (464)
Q Consensus 423 IE~~l~~~ 430 (464)
++..+...
T Consensus 302 Ve~~~~~~ 309 (403)
T COG1221 302 VERAVAQA 309 (403)
T ss_pred HHHHHHHh
Confidence 99987654
No 159
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.19 E-value=3e-10 Score=117.34 Aligned_cols=159 Identities=15% Similarity=0.195 Sum_probs=96.6
Q ss_pred hhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeee-eee--eecCceeEeeccCCccccCCCCCch
Q psy2406 268 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYG--IIKTDHILFIASGAFHLAKPSDLIP 344 (464)
Q Consensus 268 ~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~-~~~--~i~Tsnil~I~ag~f~~~~p~~f~P 344 (464)
.+| ..+|+|+|||+.+.+. +|..||..|+.+.+.+ +.| .-....+++|++.+. ....|++
T Consensus 141 ~~A-~~GiL~lDEInrL~~~-------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np---~eg~l~~ 203 (350)
T CHL00081 141 AKA-NRGILYVDEVNLLDDH-------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNP---EEGELRP 203 (350)
T ss_pred eec-CCCEEEecChHhCCHH-------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCc---ccCCCCH
Confidence 345 6899999999999765 7789999997654433 122 122345566666431 1235999
Q ss_pred hhhccCCeEEEcCCCC-HHHHHHHHHhhHHH------HHHH--------HHHHH--hhcCceeEeCHHHHHHHHHHhhcc
Q psy2406 345 ELQGRFPIRVELDSLS-ISDFTRIMTSTNVC------LTKQ--------YEALL--ATEGIKIEFVDDGIQRLAEIAYCI 407 (464)
Q Consensus 345 Efl~R~d~iV~f~~Lt-~~el~~Il~~~~~~------ll~~--------~~~ll--~~~gi~L~~sdeAl~~LA~~a~~~ 407 (464)
+|+.||...|.+..++ .++..+|++..... ..+. ....+ +..=-.+.++++++++|++.+...
T Consensus 204 ~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~ 283 (350)
T CHL00081 204 QLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSEL 283 (350)
T ss_pred HHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHH
Confidence 9999999999999998 48888888642110 0000 01111 111124688999999999998763
Q ss_pred ccCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHh
Q psy2406 408 NERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRL 450 (464)
Q Consensus 408 ~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~ 450 (464)
..-|=|.-.-++.-.-. ...-.+.-.|+.++|+...
T Consensus 284 ----~~~s~Ra~i~l~raArA---~Aal~GR~~V~pdDv~~~a 319 (350)
T CHL00081 284 ----DVDGLRGDIVTNRAAKA---LAAFEGRTEVTPKDIFKVI 319 (350)
T ss_pred ----CCCCChHHHHHHHHHHH---HHHHcCCCCCCHHHHHHHH
Confidence 12355655554432211 1112223467888887653
No 160
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.18 E-value=1.9e-10 Score=122.81 Aligned_cols=156 Identities=21% Similarity=0.247 Sum_probs=87.5
Q ss_pred cEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCCeE
Q psy2406 274 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIR 353 (464)
Q Consensus 274 sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d~i 353 (464)
.|+|+|||.++.++ +|+.||++|+.+.++.........-..+++|++ .......+.++++.||-..
T Consensus 109 ~lLfLDEI~rasp~-------------~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN-~LPE~g~~leAL~DRFlir 174 (498)
T PRK13531 109 EIVFLDEIWKAGPA-------------ILNTLLTAINERRFRNGAHEEKIPMRLLVTASN-ELPEADSSLEALYDRMLIR 174 (498)
T ss_pred cEEeecccccCCHH-------------HHHHHHHHHHhCeEecCCeEEeCCCcEEEEECC-CCcccCCchHHhHhhEEEE
Confidence 39999999988765 788999999766654322122222223344432 1111235888999999888
Q ss_pred EEcCCCC-HHHHHHHHHhhHH---H-------H-HHHHHHHHhhcCceeEeCHHHHHHHHHHhhcc--ccCCCccChhHH
Q psy2406 354 VELDSLS-ISDFTRIMTSTNV---C-------L-TKQYEALLATEGIKIEFVDDGIQRLAEIAYCI--NERTENIGARRL 419 (464)
Q Consensus 354 V~f~~Lt-~~el~~Il~~~~~---~-------l-l~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~--~~~~~~~GAR~L 419 (464)
+.+++|+ .++..+|+..... . + ..++.. +...=-.+.+++++.++|.+..... ..+....+-|+-
T Consensus 175 i~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~-lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~ 253 (498)
T PRK13531 175 LWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQ-WQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRW 253 (498)
T ss_pred EECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHH-HHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHH
Confidence 9999997 4666778753111 0 0 111211 1111235688999999998876420 001112455665
Q ss_pred HHHHHHHHHHHhcccCCCceeecHHHHH
Q psy2406 420 YTAMEKLLEEVSFNSNNISLLVDADYVN 447 (464)
Q Consensus 420 ~r~IE~~l~~~l~~~~~~~v~I~~e~v~ 447 (464)
..++. ++...+|-. +.-.|++++|.
T Consensus 254 ~~l~~-~akA~A~l~--GR~~V~p~Dv~ 278 (498)
T PRK13531 254 KKAIR-LLQASAFFS--GRDAIAPIDLI 278 (498)
T ss_pred HHHHH-HHHHHHHHC--CCCCCCHHHHH
Confidence 55443 333322221 22356667766
No 161
>KOG1942|consensus
Probab=99.18 E-value=8.6e-10 Score=110.44 Aligned_cols=97 Identities=19% Similarity=0.340 Sum_probs=68.0
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCc---------cccCCCCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAF---------HLAKPSDL 342 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f---------~~~~p~~f 342 (464)
-|+|+||||||-+.-.. ...|-+.||.... .++|++++. ....|..+
T Consensus 296 vPGVLFIDEVhMLDiEc-------------FTyL~kalES~ia-----------PivifAsNrG~~~irGt~d~~sPhGi 351 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLDIEC-------------FTYLHKALESPIA-----------PIVIFASNRGMCTIRGTEDILSPHGI 351 (456)
T ss_pred cCcceEeeehhhhhhHH-------------HHHHHHHhcCCCC-----------ceEEEecCCcceeecCCcCCCCCCCC
Confidence 48999999999886442 2367777774221 133333322 22447779
Q ss_pred chhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhc
Q psy2406 343 IPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 406 (464)
Q Consensus 343 ~PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~ 406 (464)
+|.++.|+ .||.-.+++++++++|+.. +...+| +.++++|++.|+..+..
T Consensus 352 p~dllDRl-~Iirt~~y~~~e~r~Ii~~-----------Ra~~E~--l~~~e~a~~~l~~~gt~ 401 (456)
T KOG1942|consen 352 PPDLLDRL-LIIRTLPYDEEEIRQIIKI-----------RAQVEG--LQVEEEALDLLAEIGTS 401 (456)
T ss_pred CHHHhhhe-eEEeeccCCHHHHHHHHHH-----------HHhhhc--ceecHHHHHHHHhhccc
Confidence 99999999 5678999999999999952 222334 58899999999987753
No 162
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.17 E-value=2.2e-10 Score=117.19 Aligned_cols=130 Identities=20% Similarity=0.231 Sum_probs=89.5
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeee-eecCceeEeeccCCccc---cCCCCCchhhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL---AKPSDLIPELQ 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~-~i~Tsnil~I~ag~f~~---~~p~~f~PEfl 347 (464)
..+.+||||||.+... +|..|+.+|+.+.+....+ .-...++.+|++++... .....|+++|.
T Consensus 100 ~gGtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~ 166 (326)
T PRK11608 100 DGGTLFLDELATAPML-------------VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLL 166 (326)
T ss_pred CCCeEEeCChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHH
Confidence 6789999999999754 7789999997654322111 11224567788765332 12356999999
Q ss_pred ccC-CeEEEcCCCCH--HHHHHHHHhhHHHHHHHHHHHHhhcCce--eEeCHHHHHHHHHHhhccccCCCccChhHHHHH
Q psy2406 348 GRF-PIRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIK--IEFVDDGIQRLAEIAYCINERTENIGARRLYTA 422 (464)
Q Consensus 348 ~R~-d~iV~f~~Lt~--~el~~Il~~~~~~ll~~~~~ll~~~gi~--L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~ 422 (464)
.|| ...|.++||.+ +|+..++ +.++.++.+ ..+.. ..++++|+..|..+.. -+..|.|+++
T Consensus 167 ~~l~~~~i~lPpLReR~eDI~~L~----~~fl~~~~~---~~~~~~~~~~s~~al~~L~~y~W-------PGNvrEL~~v 232 (326)
T PRK11608 167 DRLAFDVVQLPPLRERQSDIMLMA----EHFAIQMCR---ELGLPLFPGFTERARETLLNYRW-------PGNIRELKNV 232 (326)
T ss_pred HhcCCCEEECCChhhhhhhHHHHH----HHHHHHHHH---HhCCCCCCCCCHHHHHHHHhCCC-------CcHHHHHHHH
Confidence 999 45789999986 4555555 334444332 33443 4799999999997665 4789999999
Q ss_pred HHHHHH
Q psy2406 423 MEKLLE 428 (464)
Q Consensus 423 IE~~l~ 428 (464)
+++.+.
T Consensus 233 l~~a~~ 238 (326)
T PRK11608 233 VERSVY 238 (326)
T ss_pred HHHHHH
Confidence 998765
No 163
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.17 E-value=2.8e-10 Score=125.83 Aligned_cols=130 Identities=15% Similarity=0.262 Sum_probs=88.5
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeee-eecCceeEeeccCCccc---cCCCCCchhhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL---AKPSDLIPELQ 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~-~i~Tsnil~I~ag~f~~---~~p~~f~PEfl 347 (464)
.+++||||||+.+... +|..||.+|+.+.+....+ ....-++.+|++++... .....|++.|.
T Consensus 416 ~~GtL~ldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~ 482 (638)
T PRK11388 416 HGGTLFLEKVEYLSPE-------------LQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLY 482 (638)
T ss_pred CCCEEEEcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHh
Confidence 6899999999999754 7889999998654432111 11122556778765332 12356899998
Q ss_pred ccCCe-EEEcCCCCHH--HHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHH
Q psy2406 348 GRFPI-RVELDSLSIS--DFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 424 (464)
Q Consensus 348 ~R~d~-iV~f~~Lt~~--el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE 424 (464)
-|+.. .|.++||.+. |+..++ ..++.++.. ..+..+.++++++..|..+.. -+..|.|+++++
T Consensus 483 ~~l~~~~i~lPpLreR~~Di~~L~----~~~l~~~~~---~~~~~~~~s~~a~~~L~~y~W-------PGNvreL~~~l~ 548 (638)
T PRK11388 483 YALHAFEITIPPLRMRREDIPALV----NNKLRSLEK---RFSTRLKIDDDALARLVSYRW-------PGNDFELRSVIE 548 (638)
T ss_pred hhhceeEEeCCChhhhhhHHHHHH----HHHHHHHHH---HhCCCCCcCHHHHHHHHcCCC-------CChHHHHHHHHH
Confidence 88854 4678888764 566655 344444433 234456899999999997665 478899999999
Q ss_pred HHHH
Q psy2406 425 KLLE 428 (464)
Q Consensus 425 ~~l~ 428 (464)
+.+.
T Consensus 549 ~~~~ 552 (638)
T PRK11388 549 NLAL 552 (638)
T ss_pred HHHH
Confidence 8664
No 164
>PRK09087 hypothetical protein; Validated
Probab=99.15 E-value=4.5e-10 Score=109.37 Aligned_cols=86 Identities=13% Similarity=0.093 Sum_probs=62.9
Q ss_pred CchhhhccCC--eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHH
Q psy2406 342 LIPELQGRFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRL 419 (464)
Q Consensus 342 f~PEfl~R~d--~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L 419 (464)
+.|.+.+|+. .++.+++|+.+++.+|++ +.+..++ +.++++++++|+++.. ...|.+
T Consensus 134 ~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~-----------~~~~~~~--~~l~~ev~~~La~~~~--------r~~~~l 192 (226)
T PRK09087 134 KLPDLKSRLKAATVVEIGEPDDALLSQVIF-----------KLFADRQ--LYVDPHVVYYLVSRME--------RSLFAA 192 (226)
T ss_pred ccccHHHHHhCCceeecCCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHHhh--------hhHHHH
Confidence 4688999994 678999999999999985 2233344 5899999999999984 567888
Q ss_pred HHHHHHHHHHHhcccCCCceeecHHHHHhHhCC
Q psy2406 420 YTAMEKLLEEVSFNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 420 ~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~~~ 452 (464)
..++.++....+.. ...||.+.+++.+..
T Consensus 193 ~~~l~~L~~~~~~~----~~~it~~~~~~~l~~ 221 (226)
T PRK09087 193 QTIVDRLDRLALER----KSRITRALAAEVLNE 221 (226)
T ss_pred HHHHHHHHHHHHHh----CCCCCHHHHHHHHHh
Confidence 88777765433221 124788888877654
No 165
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=8.8e-10 Score=114.66 Aligned_cols=139 Identities=16% Similarity=0.138 Sum_probs=86.3
Q ss_pred cCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccC
Q psy2406 271 EQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF 350 (464)
Q Consensus 271 ~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~ 350 (464)
...-||.+||||.+..... +.|+.++.-... ...++.+|+.++...- ...++|-+.+|+
T Consensus 122 ~~~~IvvLDEid~L~~~~~-------------~~LY~L~r~~~~-------~~~~v~vi~i~n~~~~-~~~ld~rv~s~l 180 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-------------EVLYSLLRAPGE-------NKVKVSIIAVSNDDKF-LDYLDPRVKSSL 180 (366)
T ss_pred CCeEEEEEcchhhhccccc-------------hHHHHHHhhccc-------cceeEEEEEEeccHHH-HHHhhhhhhhcc
Confidence 3577999999999986522 256666542111 1455666665431100 123566665555
Q ss_pred Ce-EEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHH
Q psy2406 351 PI-RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 429 (464)
Q Consensus 351 d~-iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~ 429 (464)
.. .|.|+|++.+|+..|+.. .. ... -..-.+++++++.+|..+... .++||....++....+-
T Consensus 181 ~~~~I~F~pY~a~el~~Il~~----R~---~~~----~~~~~~~~~vl~lia~~~a~~-----~GDAR~aidilr~A~ei 244 (366)
T COG1474 181 GPSEIVFPPYTAEELYDILRE----RV---EEG----FSAGVIDDDVLKLIAALVAAE-----SGDARKAIDILRRAGEI 244 (366)
T ss_pred CcceeeeCCCCHHHHHHHHHH----HH---Hhh----ccCCCcCccHHHHHHHHHHHc-----CccHHHHHHHHHHHHHH
Confidence 33 368999999999999952 11 111 124478999999999888764 56999988888876554
Q ss_pred HhcccCCCceeecHHHHHhH
Q psy2406 430 VSFNSNNISLLVDADYVNSR 449 (464)
Q Consensus 430 ~l~~~~~~~v~I~~e~v~~~ 449 (464)
.- .... -.|+.++|..+
T Consensus 245 Ae--~~~~-~~v~~~~v~~a 261 (366)
T COG1474 245 AE--REGS-RKVSEDHVREA 261 (366)
T ss_pred HH--hhCC-CCcCHHHHHHH
Confidence 32 1111 35677777655
No 166
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.12 E-value=7.7e-10 Score=123.43 Aligned_cols=130 Identities=18% Similarity=0.281 Sum_probs=88.1
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee-eeecCceeEeeccCCccc---cCCCCCchhhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHL---AKPSDLIPELQ 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~-~~i~Tsnil~I~ag~f~~---~~p~~f~PEfl 347 (464)
.++++|||||+.+... +|..|+.+|+.+...... ......++-+|++++... .....|+++|.
T Consensus 470 ~~GtL~Ldei~~L~~~-------------~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~ 536 (686)
T PRK15429 470 DKSSLFLDEVGDMPLE-------------LQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLY 536 (686)
T ss_pred CCCeEEEechhhCCHH-------------HHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHH
Confidence 5799999999999754 778999999754332111 122345677888875432 12346899999
Q ss_pred ccCCe-EEEcCCCCH--HHHHHHHHhhHHHHHHHHHHHHhhcCcee-EeCHHHHHHHHHHhhccccCCCccChhHHHHHH
Q psy2406 348 GRFPI-RVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKI-EFVDDGIQRLAEIAYCINERTENIGARRLYTAM 423 (464)
Q Consensus 348 ~R~d~-iV~f~~Lt~--~el~~Il~~~~~~ll~~~~~ll~~~gi~L-~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~I 423 (464)
.|+.. .|.++||.+ +|+..++ ..++.++.. ..|..+ .++++|++.|..+.. -+..|-|+++|
T Consensus 537 ~~l~~~~i~lPpLreR~~Di~~L~----~~~l~~~~~---~~~~~~~~~s~~al~~L~~y~W-------PGNvrEL~~~i 602 (686)
T PRK15429 537 YRLNVFPIHLPPLRERPEDIPLLV----KAFTFKIAR---RMGRNIDSIPAETLRTLSNMEW-------PGNVRELENVI 602 (686)
T ss_pred hccCeeEEeCCChhhhHhHHHHHH----HHHHHHHHH---HcCCCCCCcCHHHHHHHHhCCC-------CCcHHHHHHHH
Confidence 89866 478888876 3444444 234443322 335444 599999999986655 57899999999
Q ss_pred HHHHH
Q psy2406 424 EKLLE 428 (464)
Q Consensus 424 E~~l~ 428 (464)
++.+.
T Consensus 603 ~~a~~ 607 (686)
T PRK15429 603 ERAVL 607 (686)
T ss_pred HHHHH
Confidence 98775
No 167
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.10 E-value=4.6e-10 Score=121.65 Aligned_cols=130 Identities=18% Similarity=0.276 Sum_probs=88.4
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee-eeecCceeEeeccCCccc---cCCCCCchhhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHL---AKPSDLIPELQ 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~-~~i~Tsnil~I~ag~f~~---~~p~~f~PEfl 347 (464)
..+.|||||||.+.+. +|..|+.+|+.+.+.... ......++.+|++++... .....|++.|.
T Consensus 298 ~~GtL~LdeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~ 364 (520)
T PRK10820 298 NGGSVLLDEIGEMSPR-------------MQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLY 364 (520)
T ss_pred CCCEEEEeChhhCCHH-------------HHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHH
Confidence 5789999999999754 778999999754332111 112234667888875332 12346999999
Q ss_pred ccCC-eEEEcCCCCHH--HHHHHHHhhHHHHHHHHHHHHhhcCc-eeEeCHHHHHHHHHHhhccccCCCccChhHHHHHH
Q psy2406 348 GRFP-IRVELDSLSIS--DFTRIMTSTNVCLTKQYEALLATEGI-KIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 423 (464)
Q Consensus 348 ~R~d-~iV~f~~Lt~~--el~~Il~~~~~~ll~~~~~ll~~~gi-~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~I 423 (464)
.|+. ..|.++||.+. ++..++ ..++.++.. ..|. ...++++++..|..+.. -+..|.|++++
T Consensus 365 ~rL~~~~i~lPpLreR~~Di~~L~----~~fl~~~~~---~~g~~~~~ls~~a~~~L~~y~W-------PGNvreL~nvl 430 (520)
T PRK10820 365 YRLNVLTLNLPPLRDRPQDIMPLT----ELFVARFAD---EQGVPRPKLAADLNTVLTRYGW-------PGNVRQLKNAI 430 (520)
T ss_pred hhcCeeEEeCCCcccChhHHHHHH----HHHHHHHHH---HcCCCCCCcCHHHHHHHhcCCC-------CCHHHHHHHHH
Confidence 9975 56788888863 455554 334444333 3443 34799999999986655 47899999999
Q ss_pred HHHHH
Q psy2406 424 EKLLE 428 (464)
Q Consensus 424 E~~l~ 428 (464)
++.+.
T Consensus 431 ~~a~~ 435 (520)
T PRK10820 431 YRALT 435 (520)
T ss_pred HHHHH
Confidence 98775
No 168
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.09 E-value=1.3e-09 Score=118.39 Aligned_cols=128 Identities=21% Similarity=0.199 Sum_probs=86.8
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee-eeecCceeEeeccCCccc---cCCCCCchhhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHL---AKPSDLIPELQ 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~-~~i~Tsnil~I~ag~f~~---~~p~~f~PEfl 347 (464)
..+.||||||+.+... +|..||.+|+.+.+..-. ......++-+|++++... .....|++.|.
T Consensus 307 ~gGTLfLdeI~~Lp~~-------------~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~ 373 (526)
T TIGR02329 307 HRGTLFLDEIGEMPLP-------------LQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLF 373 (526)
T ss_pred CCceEEecChHhCCHH-------------HHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHH
Confidence 6889999999999754 788999999765442211 112233556788775432 12346999999
Q ss_pred ccCC-eEEEcCCCCH--HHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHH-------HHHHhhccccCCCccChh
Q psy2406 348 GRFP-IRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQR-------LAEIAYCINERTENIGAR 417 (464)
Q Consensus 348 ~R~d-~iV~f~~Lt~--~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~-------LA~~a~~~~~~~~~~GAR 417 (464)
.|+. ..|.++||.+ +|+..++ ..++.++.. ..+ +.++++++.. |..+ ++ -+..|
T Consensus 374 ~rL~~~~I~lPPLReR~eDI~~L~----~~fl~~~~~---~~~--~~~~~~a~~~~~~~~~~L~~y--~W-----PGNvr 437 (526)
T TIGR02329 374 YRLSILRIALPPLRERPGDILPLA----AEYLVQAAA---ALR--LPDSEAAAQVLAGVADPLQRY--PW-----PGNVR 437 (526)
T ss_pred HhcCCcEEeCCCchhchhHHHHHH----HHHHHHHHH---HcC--CCCCHHHHHHhHHHHHHHHhC--CC-----CchHH
Confidence 9996 5688999986 4666655 344444332 223 3589999888 6544 44 58899
Q ss_pred HHHHHHHHHHH
Q psy2406 418 RLYTAMEKLLE 428 (464)
Q Consensus 418 ~L~r~IE~~l~ 428 (464)
.|++++++.+.
T Consensus 438 EL~nvier~~i 448 (526)
T TIGR02329 438 ELRNLVERLAL 448 (526)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 169
>KOG0735|consensus
Probab=99.07 E-value=3.2e-09 Score=116.04 Aligned_cols=155 Identities=21% Similarity=0.238 Sum_probs=91.6
Q ss_pred HHHHhhccCCcEEEEeccccccCcCCCCCCCCc-chhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCC
Q psy2406 264 QKAINNVEQNGIIFLDEIDKITTRSSQNNNTDI-SRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDL 342 (464)
Q Consensus 264 ~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~-~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f 342 (464)
.+|+..+ |+||++|.+|.+....++.++.+. ........|.|++... .-+.+.+.||+++. .-..+
T Consensus 488 se~~~~~--PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y-------~~~~~~ia~Iat~q----e~qtl 554 (952)
T KOG0735|consen 488 SEALWYA--PSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIY-------LKRNRKIAVIATGQ----ELQTL 554 (952)
T ss_pred HHHHhhC--CcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHH-------HccCcEEEEEEech----hhhhc
Confidence 4455555 899999999999873333223222 2222222222444321 11334467888873 22233
Q ss_pred chhhh--ccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHH
Q psy2406 343 IPELQ--GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLY 420 (464)
Q Consensus 343 ~PEfl--~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~ 420 (464)
.|-|. .+|+.++.+++|...++.+||+. + +.... +..+.+-+++++..+. +|-|+.|-
T Consensus 555 ~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~----~-------~s~~~--~~~~~~dLd~ls~~TE-------Gy~~~DL~ 614 (952)
T KOG0735|consen 555 NPLLVSPLLFQIVIALPAPAVTRRKEILTT----I-------FSKNL--SDITMDDLDFLSVKTE-------GYLATDLV 614 (952)
T ss_pred ChhhcCccceEEEEecCCcchhHHHHHHHH----H-------HHhhh--hhhhhHHHHHHHHhcC-------CccchhHH
Confidence 33322 48999999999999999999962 2 11111 2445566777877764 68999998
Q ss_pred HHHHHHHHHHhcc-cCCCceeecHHHHHhHhC
Q psy2406 421 TAMEKLLEEVSFN-SNNISLLVDADYVNSRLG 451 (464)
Q Consensus 421 r~IE~~l~~~l~~-~~~~~v~I~~e~v~~~~~ 451 (464)
-.+++.+-....+ ....+-.+|.+.+.+.+.
T Consensus 615 ifVeRai~~a~leris~~~klltke~f~ksL~ 646 (952)
T KOG0735|consen 615 IFVERAIHEAFLERISNGPKLLTKELFEKSLK 646 (952)
T ss_pred HHHHHHHHHHHHHHhccCcccchHHHHHHHHH
Confidence 8888877665422 122222577777766543
No 170
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.07 E-value=7e-10 Score=95.47 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=32.0
Q ss_pred cceEEEecCCCchHHHHHHHHHHh---CCCeEEeecCce
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEATKF 107 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s~~ 107 (464)
.+++++||||||||++++.+++.+ +.+++.++++..
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~ 58 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDL 58 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhh
Confidence 569999999999999999999998 888888887654
No 171
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.07 E-value=1.9e-09 Score=117.23 Aligned_cols=130 Identities=24% Similarity=0.266 Sum_probs=83.3
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee-eeecCceeEeeccCCcccc---CCCCCchhhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHLA---KPSDLIPELQ 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~-~~i~Tsnil~I~ag~f~~~---~p~~f~PEfl 347 (464)
..+.||||||+.+... +|..||.+|+.+.+..-. ......++-+|++++.+.. ....|++.|.
T Consensus 322 ~gGTLfLdeI~~Lp~~-------------~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~ 388 (538)
T PRK15424 322 HGGTLFLDEIGEMPLP-------------LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLF 388 (538)
T ss_pred CCCEEEEcChHhCCHH-------------HHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHH
Confidence 6899999999999754 788999999865543211 1122346678888754321 2345999999
Q ss_pred ccCC-eEEEcCCCCH--HHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHH-----HhhccccCCCccChhHH
Q psy2406 348 GRFP-IRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAE-----IAYCINERTENIGARRL 419 (464)
Q Consensus 348 ~R~d-~iV~f~~Lt~--~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~-----~a~~~~~~~~~~GAR~L 419 (464)
.|+. ..|.++||.+ +|+..++ ..+++++.. ..+. .++++++..+.. ..|++ -+..|.|
T Consensus 389 yrL~~~~I~lPPLReR~eDI~~L~----~~fl~~~~~---~~~~--~~~~~a~~~~~~a~~~L~~y~W-----PGNvREL 454 (538)
T PRK15424 389 YRLSILRLQLPPLRERVADILPLA----ESFLKQSLA---ALSA--PFSAALRQGLQQCETLLLHYDW-----PGNVREL 454 (538)
T ss_pred HHhcCCeecCCChhhchhHHHHHH----HHHHHHHHH---HcCC--CCCHHHHHhhHHHHHHHHhCCC-----CchHHHH
Confidence 8885 4577888876 4555555 334443322 2233 477877743221 23444 5889999
Q ss_pred HHHHHHHHH
Q psy2406 420 YTAMEKLLE 428 (464)
Q Consensus 420 ~r~IE~~l~ 428 (464)
++++++.+.
T Consensus 455 ~nvier~~i 463 (538)
T PRK15424 455 RNLMERLAL 463 (538)
T ss_pred HHHHHHHHH
Confidence 999998765
No 172
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.07 E-value=4.1e-10 Score=119.45 Aligned_cols=130 Identities=22% Similarity=0.237 Sum_probs=88.9
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee-eeecCceeEeeccCCcccc---CCCCCchhhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHLA---KPSDLIPELQ 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~-~~i~Tsnil~I~ag~f~~~---~p~~f~PEfl 347 (464)
.++.+||||||.+... +|..|+.+|+.+.+.... ......++.+|++++.... ....|+++|.
T Consensus 232 ~~Gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~ 298 (469)
T PRK10923 232 DGGTLFLDEIGDMPLD-------------VQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 (469)
T ss_pred CCCEEEEeccccCCHH-------------HHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHH
Confidence 5789999999999754 777999999755432211 1112346677887753321 2346999999
Q ss_pred ccC-CeEEEcCCCCH--HHHHHHHHhhHHHHHHHHHHHHhhcCcee-EeCHHHHHHHHHHhhccccCCCccChhHHHHHH
Q psy2406 348 GRF-PIRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKI-EFVDDGIQRLAEIAYCINERTENIGARRLYTAM 423 (464)
Q Consensus 348 ~R~-d~iV~f~~Lt~--~el~~Il~~~~~~ll~~~~~ll~~~gi~L-~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~I 423 (464)
.|+ ...|.++||.+ +++..++ ..+++++.. ..+..+ .++++|+..|..+.+ -+..|-|+++|
T Consensus 299 ~~l~~~~i~~PpLreR~~Di~~l~----~~~l~~~~~---~~~~~~~~~~~~a~~~L~~~~w-------pgNv~eL~~~i 364 (469)
T PRK10923 299 HRLNVIRVHLPPLRERREDIPRLA----RHFLQVAAR---ELGVEAKLLHPETEAALTRLAW-------PGNVRQLENTC 364 (469)
T ss_pred HHhcceeecCCCcccchhhHHHHH----HHHHHHHHH---HcCCCCCCcCHHHHHHHHhCCC-------CChHHHHHHHH
Confidence 999 46778888876 3555554 344444332 334433 689999999997766 47899999999
Q ss_pred HHHHH
Q psy2406 424 EKLLE 428 (464)
Q Consensus 424 E~~l~ 428 (464)
++.+.
T Consensus 365 ~~~~~ 369 (469)
T PRK10923 365 RWLTV 369 (469)
T ss_pred HHHHH
Confidence 98764
No 173
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.06 E-value=1.5e-09 Score=119.42 Aligned_cols=158 Identities=14% Similarity=0.149 Sum_probs=93.7
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeee-eee--eecCceeEeeccCCccccCCCCCchhhhc
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYG--IIKTDHILFIASGAFHLAKPSDLIPELQG 348 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~-~~~--~i~Tsnil~I~ag~f~~~~p~~f~PEfl~ 348 (464)
..+|+|||||+++.+. +|+.||+.|+.+.+++ +.| .-...+..+|++.+-. .....|+++|+.
T Consensus 84 ~~GvL~lDEi~rl~~~-------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~-e~~g~L~~~Lld 149 (589)
T TIGR02031 84 PRGVLYVDMANLLDDG-------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPA-EGGGGLPDHLLD 149 (589)
T ss_pred CCCcEeccchhhCCHH-------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCc-cccCCCCHHHHH
Confidence 5789999999999764 7889999998665443 222 1223456777765321 111369999999
Q ss_pred cCCeEEEcCCC-CHHHHHHHHHhhHHH----------HHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChh
Q psy2406 349 RFPIRVELDSL-SISDFTRIMTSTNVC----------LTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGAR 417 (464)
Q Consensus 349 R~d~iV~f~~L-t~~el~~Il~~~~~~----------ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR 417 (464)
||+..|.+..+ +.++..+|+...... ............--.+.++++++++|+..+...+ ..|-|
T Consensus 150 Rf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~g----v~s~R 225 (589)
T TIGR02031 150 RLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLG----ISGHR 225 (589)
T ss_pred hccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcC----CCCcc
Confidence 99998777655 445567777532110 0111111122222356889999999999998641 22345
Q ss_pred HHHHHHHHHHHHHhcccCCCceeecHHHHHhHh
Q psy2406 418 RLYTAMEKLLEEVSFNSNNISLLVDADYVNSRL 450 (464)
Q Consensus 418 ~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~ 450 (464)
....++.- ... ...+. +.-.|+.++|+.+.
T Consensus 226 a~i~~~r~-ArA-~Aal~-gr~~V~~~Dv~~a~ 255 (589)
T TIGR02031 226 ADLFAVRA-AKA-HAALH-GRTEVTEEDLKLAV 255 (589)
T ss_pred HHHHHHHH-HHH-HHHHh-CCCCCCHHHHHHHH
Confidence 54444332 111 11222 22467888887764
No 174
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.06 E-value=2.1e-09 Score=116.30 Aligned_cols=165 Identities=18% Similarity=0.202 Sum_probs=99.5
Q ss_pred hhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeee-eeeee--cCceeEeeccCCcccc--C----
Q psy2406 268 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGII--KTDHILFIASGAFHLA--K---- 338 (464)
Q Consensus 268 ~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~-~~~~i--~Tsnil~I~ag~f~~~--~---- 338 (464)
..| ..+++||||+|++.+. .|..|+..|+.+.++. +.|.. ...+..+|+|++-... +
T Consensus 297 ~~A-~~Gil~iDEi~~l~~~-------------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~ 362 (509)
T smart00350 297 VLA-DNGVCCIDEFDKMDDS-------------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLT 362 (509)
T ss_pred Eec-CCCEEEEechhhCCHH-------------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcC
Confidence 345 6899999999999754 6779999999877764 33322 2345567777542111 1
Q ss_pred ---CCCCchhhhccCCeEEEc-CCCCHHHHHHHHHhhHH-------------------HHHHHHHHHHhhcCceeEeCHH
Q psy2406 339 ---PSDLIPELQGRFPIRVEL-DSLSISDFTRIMTSTNV-------------------CLTKQYEALLATEGIKIEFVDD 395 (464)
Q Consensus 339 ---p~~f~PEfl~R~d~iV~f-~~Lt~~el~~Il~~~~~-------------------~ll~~~~~ll~~~gi~L~~sde 395 (464)
...++|++++|||.++.+ ++++.+.-.+|++.... ..++++.... ...+.-.++++
T Consensus 363 ~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~a-r~~~~P~ls~~ 441 (509)
T smart00350 363 PEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYA-REKIKPKLSEE 441 (509)
T ss_pred hhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHH-HhcCCCCCCHH
Confidence 126899999999987555 67777777777753111 1122232222 22244468999
Q ss_pred HHHHHHHHhhccccC--------CCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHh
Q psy2406 396 GIQRLAEIAYCINER--------TENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRL 450 (464)
Q Consensus 396 Al~~LA~~a~~~~~~--------~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~ 450 (464)
+.++|.+.+...-.. .-....|.|..++.-. .....+.. .-.|+.++|+.+.
T Consensus 442 ~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla--~A~A~l~~-r~~V~~~Dv~~ai 501 (509)
T smart00350 442 AAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLS--EAHAKMRL-SDVVEEADVEEAI 501 (509)
T ss_pred HHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHH--HHHHHHcC-CCccCHHHHHHHH
Confidence 999998877653111 1123567777766532 11222222 2468888887764
No 175
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.03 E-value=1.1e-09 Score=116.50 Aligned_cols=134 Identities=19% Similarity=0.256 Sum_probs=88.7
Q ss_pred hhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeee-eecCceeEeeccCCcccc---CCCCCc
Q psy2406 268 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLA---KPSDLI 343 (464)
Q Consensus 268 ~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~-~i~Tsnil~I~ag~f~~~---~p~~f~ 343 (464)
+.| ..+.+|||||..+... +|.-||.+|+.+.+..-.+ .--.-++-+|++|+.+.. ....|+
T Consensus 232 E~A-~GGTLfLDEI~~mpl~-------------~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FR 297 (464)
T COG2204 232 EQA-NGGTLFLDEIGEMPLE-------------LQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFR 297 (464)
T ss_pred eEc-CCceEEeeccccCCHH-------------HHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcCCcH
Confidence 445 7899999999998754 7889999998655543221 223346778998865432 234699
Q ss_pred hhhhccCCeE-EEcCCCCH--HHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHH
Q psy2406 344 PELQGRFPIR-VELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLY 420 (464)
Q Consensus 344 PEfl~R~d~i-V~f~~Lt~--~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~ 420 (464)
..|.-|+.++ +.++||-+ +|+--++ ..+++++.+... .-...|+++|+..|..+.. -+..|-|+
T Consensus 298 eDLyyRLnV~~i~iPpLRER~EDIp~L~----~hfl~~~~~~~~--~~~~~~s~~a~~~L~~y~W-------PGNVREL~ 364 (464)
T COG2204 298 EDLYYRLNVVPLRLPPLRERKEDIPLLA----EHFLKRFAAELG--RPPKGFSPEALAALLAYDW-------PGNVRELE 364 (464)
T ss_pred HHHHhhhccceecCCcccccchhHHHHH----HHHHHHHHHHcC--CCCCCCCHHHHHHHHhCCC-------ChHHHHHH
Confidence 9999998764 33444432 3333333 345554444332 1246899999999985554 58899999
Q ss_pred HHHHHHHH
Q psy2406 421 TAMEKLLE 428 (464)
Q Consensus 421 r~IE~~l~ 428 (464)
+++|+.+.
T Consensus 365 N~ver~~i 372 (464)
T COG2204 365 NVVERAVI 372 (464)
T ss_pred HHHHHHHh
Confidence 99998764
No 176
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.00 E-value=9e-09 Score=111.06 Aligned_cols=162 Identities=14% Similarity=0.213 Sum_probs=95.2
Q ss_pred HhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeee-eee--eecCceeEeeccCCccc----c--
Q psy2406 267 INNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYG--IIKTDHILFIASGAFHL----A-- 337 (464)
Q Consensus 267 v~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~-~~~--~i~Tsnil~I~ag~f~~----~-- 337 (464)
+..| ..+|+|||||+.+.+. +|+.|++.||.+.+.. +.+ .....++.+|+|.+-.. .
T Consensus 290 l~~A-~gGvLfLDEi~e~~~~-------------~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~ 355 (506)
T PRK09862 290 ISLA-HNGVLFLDELPEFERR-------------TLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGN 355 (506)
T ss_pred hhhc-cCCEEecCCchhCCHH-------------HHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCC
Confidence 4666 7899999999987643 7889999998766643 221 22345667777754211 0
Q ss_pred ----CC-------CCCchhhhccCCeEEEcCCCCHHHHHH----------HHHhhHHHHHHHH--HHHHhhcC-------
Q psy2406 338 ----KP-------SDLIPELQGRFPIRVELDSLSISDFTR----------IMTSTNVCLTKQY--EALLATEG------- 387 (464)
Q Consensus 338 ----~p-------~~f~PEfl~R~d~iV~f~~Lt~~el~~----------Il~~~~~~ll~~~--~~ll~~~g------- 387 (464)
.| ..+++++++|||..|.+.+++.+++.+ |.+........+. +..+ ...
T Consensus 356 ~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~-n~~l~~~~l~ 434 (506)
T PRK09862 356 HNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKL-NAWLDSPEIR 434 (506)
T ss_pred CCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHH-hcccCHHHHH
Confidence 01 137889999999999999986554432 2111000110000 0000 000
Q ss_pred ceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHhC
Q psy2406 388 IKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLG 451 (464)
Q Consensus 388 i~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~~ 451 (464)
--+.+++++.+++....... +..+|...+++.- ...+.++.+.+ .|+.++|..++.
T Consensus 435 ~~~~l~~~~~~~l~~~~~~~-----~lS~Ra~~rlLrv--ARTiADL~g~~-~V~~~hv~eAl~ 490 (506)
T PRK09862 435 QFCKLESEDARWLEETLIHL-----GLSIRAWQRLLKV--ARTIADIDQSD-IITRQHLQEAVS 490 (506)
T ss_pred HHhCCCHHHHHHHHHHHHHc-----CCCHHHHHHHHHH--HHHHHHHcCCC-CCCHHHHHHHHH
Confidence 01456777777776655544 5678888887752 22234455443 688888887753
No 177
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.00 E-value=1.6e-10 Score=103.46 Aligned_cols=33 Identities=30% Similarity=0.410 Sum_probs=24.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEeecC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIEAT 105 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s 105 (464)
++||.|+||+|||++|+++|+.+|..|.++.++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~t 33 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFT 33 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEec
Confidence 489999999999999999999999999999874
No 178
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.00 E-value=2.3e-08 Score=97.86 Aligned_cols=87 Identities=13% Similarity=0.159 Sum_probs=62.5
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCc--eeEeCHHHHHHHHHHhhccccCCCccChhHHHH
Q psy2406 344 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGI--KIEFVDDGIQRLAEIAYCINERTENIGARRLYT 421 (464)
Q Consensus 344 PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi--~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r 421 (464)
..+.+|+...+.+++++.+++..++.. . +...|. ...+++++++.|++.+ .+-.|.+..
T Consensus 177 ~~l~~r~~~~~~l~~l~~~e~~~~l~~----~-------l~~~g~~~~~~~~~~~~~~i~~~s--------~G~p~~i~~ 237 (269)
T TIGR03015 177 QQLRQRIIASCHLGPLDREETREYIEH----R-------LERAGNRDAPVFSEGAFDAIHRFS--------RGIPRLINI 237 (269)
T ss_pred HHHHhheeeeeeCCCCCHHHHHHHHHH----H-------HHHcCCCCCCCcCHHHHHHHHHHc--------CCcccHHHH
Confidence 357889988999999999999988841 2 222222 3468999999999988 355788888
Q ss_pred HHHHHHHHHhcccCCCceeecHHHHHhHhCC
Q psy2406 422 AMEKLLEEVSFNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 422 ~IE~~l~~~l~~~~~~~v~I~~e~v~~~~~~ 452 (464)
++...+...... +.-.||.++|+.....
T Consensus 238 l~~~~~~~a~~~---~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 238 LCDRLLLSAFLE---EKREIGGEEVREVIAE 265 (269)
T ss_pred HHHHHHHHHHHc---CCCCCCHHHHHHHHHH
Confidence 888776654322 2236899999887654
No 179
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.97 E-value=1.7e-10 Score=107.52 Aligned_cols=71 Identities=23% Similarity=0.310 Sum_probs=45.8
Q ss_pred hhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee-eeecCceeEeeccCCcccc---CCCCCc
Q psy2406 268 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHLA---KPSDLI 343 (464)
Q Consensus 268 ~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~-~~i~Tsnil~I~ag~f~~~---~p~~f~ 343 (464)
..| ..+++|||||+.+.+. +|..||++|+.+.+.... ......++.+|++++.+.. ....|+
T Consensus 90 ~~A-~~GtL~Ld~I~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~v~~g~fr 155 (168)
T PF00158_consen 90 EQA-NGGTLFLDEIEDLPPE-------------LQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEELVEQGRFR 155 (168)
T ss_dssp HHT-TTSEEEEETGGGS-HH-------------HHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHHHHTTSS-
T ss_pred eec-cceEEeecchhhhHHH-------------HHHHHHHHHhhchhccccccccccccceEEeecCcCHHHHHHcCCCh
Confidence 555 7899999999999765 888999999855443211 1223457788888753321 134699
Q ss_pred hhhhccCCe
Q psy2406 344 PELQGRFPI 352 (464)
Q Consensus 344 PEfl~R~d~ 352 (464)
++|.-|+..
T Consensus 156 ~dLy~rL~~ 164 (168)
T PF00158_consen 156 EDLYYRLNV 164 (168)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhce
Confidence 999888765
No 180
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.96 E-value=3.4e-09 Score=112.40 Aligned_cols=89 Identities=16% Similarity=0.246 Sum_probs=53.5
Q ss_pred HHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCc----e--eeee------eeeecCceeEeeccCC
Q psy2406 266 AINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGT----T--VNTK------YGIIKTDHILFIASGA 333 (464)
Q Consensus 266 Av~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~----~--v~~~------~~~i~Tsnil~I~ag~ 333 (464)
|.+....+.|+|||||++++.+. +...|+++||.. . +... .....-+|+.+|||.+
T Consensus 266 A~~~p~~~~vliIDEINRani~k------------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMN 333 (459)
T PRK11331 266 AKEQPEKKYVFIIDEINRANLSK------------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMN 333 (459)
T ss_pred HHhcccCCcEEEEehhhccCHHH------------hhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecC
Confidence 33333467899999999998653 223677777732 1 1110 1233458889999874
Q ss_pred ccccCCCCCchhhhccCCeEEEcCC-CCHHHHHHH
Q psy2406 334 FHLAKPSDLIPELQGRFPIRVELDS-LSISDFTRI 367 (464)
Q Consensus 334 f~~~~p~~f~PEfl~R~d~iV~f~~-Lt~~el~~I 367 (464)
.....-..++++|++||.. |.+.| .+...+...
T Consensus 334 t~Drs~~~lD~AlrRRF~f-i~i~p~~~~~~~~~~ 367 (459)
T PRK11331 334 TADRSLAVVDYALRRRFSF-IDIEPGFDTPQFRNF 367 (459)
T ss_pred ccccchhhccHHHHhhhhe-EEecCCCChHHHHHH
Confidence 2111112489999999965 57776 554444443
No 181
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.95 E-value=2.6e-09 Score=112.64 Aligned_cols=130 Identities=18% Similarity=0.223 Sum_probs=86.8
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee-eeecCceeEeeccCCcccc---CCCCCchhhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHLA---KPSDLIPELQ 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~-~~i~Tsnil~I~ag~f~~~---~p~~f~PEfl 347 (464)
..++|||||||.+.+. +|..|+.+|+.+....-. ......++.+|++++.... ....|++++.
T Consensus 237 ~~gtl~ld~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~ 303 (457)
T PRK11361 237 NEGTLLLDEIGEMPLV-------------LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLF 303 (457)
T ss_pred CCCEEEEechhhCCHH-------------HHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHH
Confidence 6789999999999754 778999999865432211 1112345677887753321 2346888888
Q ss_pred ccCC-eEEEcCCCCH--HHHHHHHHhhHHHHHHHHHHHHhhcCce-eEeCHHHHHHHHHHhhccccCCCccChhHHHHHH
Q psy2406 348 GRFP-IRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 423 (464)
Q Consensus 348 ~R~d-~iV~f~~Lt~--~el~~Il~~~~~~ll~~~~~ll~~~gi~-L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~I 423 (464)
.|+. ..|.++||.+ +++..++ ..++.++... .+.. ..++++|++.|..+.+ -+..|-|+++|
T Consensus 304 ~~l~~~~i~~ppLreR~~di~~l~----~~~l~~~~~~---~~~~~~~~~~~a~~~L~~~~w-------pgNv~eL~~~~ 369 (457)
T PRK11361 304 YRLNVIHLILPPLRDRREDISLLA----NHFLQKFSSE---NQRDIIDIDPMAMSLLTAWSW-------PGNIRELSNVI 369 (457)
T ss_pred HHhccceecCCChhhchhhHHHHH----HHHHHHHHHH---cCCCCCCcCHHHHHHHHcCCC-------CCcHHHHHHHH
Confidence 8874 4466777773 4555554 3445544332 2433 5799999999987665 47899999999
Q ss_pred HHHHH
Q psy2406 424 EKLLE 428 (464)
Q Consensus 424 E~~l~ 428 (464)
++.+.
T Consensus 370 ~~~~~ 374 (457)
T PRK11361 370 ERAVV 374 (457)
T ss_pred HHHHH
Confidence 98764
No 182
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.95 E-value=7.8e-09 Score=114.35 Aligned_cols=123 Identities=17% Similarity=0.265 Sum_probs=77.3
Q ss_pred HHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeee-------ee----cCceeEeeccC
Q psy2406 264 QKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-------II----KTDHILFIASG 332 (464)
Q Consensus 264 ~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~-------~i----~Tsnil~I~ag 332 (464)
..++.+| ..+++||||++.+.+. .|+.|+.+|+.+.+..... .+ -.-++.+|+++
T Consensus 219 ~G~L~kA-nGGtL~LDei~~L~~~-------------~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~ 284 (637)
T PRK13765 219 AGAIHKA-HKGVLFIDEINTLDLE-------------SQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAG 284 (637)
T ss_pred CCceeEC-CCcEEEEeChHhCCHH-------------HHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEec
Confidence 4455677 8899999999999543 6778999997555433110 01 11255677777
Q ss_pred CccccCCCCCchhhhccCC---eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhcc
Q psy2406 333 AFHLAKPSDLIPELQGRFP---IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 407 (464)
Q Consensus 333 ~f~~~~p~~f~PEfl~R~d---~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~ 407 (464)
+.. -...++|+|..||. ..+.|+.-.++....+ ..+++.+.+.+...|-...|+++|+..|++.+...
T Consensus 285 ~~~--ll~~~dpdL~~rfk~~~v~v~f~~~~~d~~e~~-----~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ 355 (637)
T PRK13765 285 NLD--ALENMHPALRSRIKGYGYEVYMRDTMEDTPENR-----RKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRR 355 (637)
T ss_pred CcC--HHHhhhHHHHHHhccCeEEEEcccccCCCHHHH-----HHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHH
Confidence 421 12357899999997 6777775443222222 12333344444444444589999999999988763
No 183
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.94 E-value=4.1e-09 Score=105.39 Aligned_cols=62 Identities=26% Similarity=0.449 Sum_probs=48.9
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
++-||+|||+|+++.. .+++|+..+|- ...|..||+.+ +.++.+.|.+.+|+-
T Consensus 109 ~~kviiidead~mt~~-------------A~nallk~lEe----------p~~~~~~il~~----n~~~~il~tI~SRc~ 161 (325)
T COG0470 109 GYKVVIIDEADKLTED-------------AANALLKTLEE----------PPKNTRFILIT----NDPSKILPTIRSRCQ 161 (325)
T ss_pred CceEEEeCcHHHHhHH-------------HHHHHHHHhcc----------CCCCeEEEEEc----CChhhccchhhhcce
Confidence 5679999999999864 56799999985 34456777775 368889999999995
Q ss_pred eEEEcCCCCH
Q psy2406 352 IRVELDSLSI 361 (464)
Q Consensus 352 ~iV~f~~Lt~ 361 (464)
++.|++++.
T Consensus 162 -~i~f~~~~~ 170 (325)
T COG0470 162 -RIRFKPPSR 170 (325)
T ss_pred -eeecCCchH
Confidence 479999553
No 184
>KOG0743|consensus
Probab=98.94 E-value=5.3e-09 Score=109.84 Aligned_cols=89 Identities=13% Similarity=0.242 Sum_probs=57.4
Q ss_pred CCcEEEEeccccccCcCCCCCC----CC-cchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNN----TD-ISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPEL 346 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~----~d-~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEf 346 (464)
+.+||+|..||.....+..... .+ ....-...-||..+||---.. .+--++|+|| +.+..|+|+|
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSsc------g~ERIivFTT----Nh~EkLDPAL 355 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSC------GDERIIVFTT----NHKEKLDPAL 355 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccC------CCceEEEEec----CChhhcCHhh
Confidence 6789999999987543221110 00 011112335788888732211 0122556665 4677899999
Q ss_pred hc--cCCeEEEcCCCCHHHHHHHHHh
Q psy2406 347 QG--RFPIRVELDSLSISDFTRIMTS 370 (464)
Q Consensus 347 l~--R~d~iV~f~~Lt~~el~~Il~~ 370 (464)
++ |+|.-|.+...+.+.+...+..
T Consensus 356 lRpGRmDmhI~mgyCtf~~fK~La~n 381 (457)
T KOG0743|consen 356 LRPGRMDMHIYMGYCTFEAFKTLASN 381 (457)
T ss_pred cCCCcceeEEEcCCCCHHHHHHHHHH
Confidence 95 9999999999999999888863
No 185
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.94 E-value=4.2e-09 Score=111.36 Aligned_cols=130 Identities=18% Similarity=0.232 Sum_probs=90.8
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee-eeecCceeEeeccCCccc---cCCCCCchhhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHL---AKPSDLIPELQ 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~-~~i~Tsnil~I~ag~f~~---~~p~~f~PEfl 347 (464)
.++.|||||||.+... +|..|+.+|+.+.+..-. ......++-+|++++... .....|++.|.
T Consensus 228 ~~gtl~l~ei~~l~~~-------------~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~ 294 (463)
T TIGR01818 228 DGGTLFLDEIGDMPLD-------------AQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLF 294 (463)
T ss_pred CCCeEEEEchhhCCHH-------------HHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHH
Confidence 5789999999999754 677999999754432211 112233566777765332 12346899999
Q ss_pred ccCCe-EEEcCCCC--HHHHHHHHHhhHHHHHHHHHHHHhhcCce-eEeCHHHHHHHHHHhhccccCCCccChhHHHHHH
Q psy2406 348 GRFPI-RVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 423 (464)
Q Consensus 348 ~R~d~-iV~f~~Lt--~~el~~Il~~~~~~ll~~~~~ll~~~gi~-L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~I 423 (464)
.|+.. .|.++||. .+++..++. ..+.++... .+.. ..++++|+..|..+.. -+..|-|++++
T Consensus 295 ~rl~~~~i~lPpLr~R~~Di~~l~~----~~l~~~~~~---~~~~~~~~~~~a~~~L~~~~w-------pgNvreL~~~~ 360 (463)
T TIGR01818 295 HRLNVIRIHLPPLRERREDIPRLAR----HFLALAARE---LDVEPKLLDPEALERLKQLRW-------PGNVRQLENLC 360 (463)
T ss_pred HHhCcceecCCCcccchhhHHHHHH----HHHHHHHHH---hCCCCCCcCHHHHHHHHhCCC-------CChHHHHHHHH
Confidence 99875 78999999 678888773 455554332 2322 3689999999997765 47899999999
Q ss_pred HHHHH
Q psy2406 424 EKLLE 428 (464)
Q Consensus 424 E~~l~ 428 (464)
++.+.
T Consensus 361 ~~~~~ 365 (463)
T TIGR01818 361 RWLTV 365 (463)
T ss_pred HHHHH
Confidence 98765
No 186
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=6.8e-09 Score=105.22 Aligned_cols=70 Identities=16% Similarity=0.330 Sum_probs=55.0
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+-|++||++|+++.. .++.||+.||.. .++++||.++ .++..+.|.+++|+-
T Consensus 93 ~~kv~iI~~ad~m~~~-------------a~naLLK~LEep----------p~~t~~il~~----~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 93 DKKVIIIYNSEKMTEQ-------------AQNAFLKTIEEP----------PKGVFIILLC----ENLEQILDTIKSRCQ 145 (313)
T ss_pred CceEEEEechhhcCHH-------------HHHHHHHHhcCC----------CCCeEEEEEe----CChHhCcHHHHhhce
Confidence 4679999999999754 567999999952 2345555554 367789999999995
Q ss_pred eEEEcCCCCHHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMT 369 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~ 369 (464)
++.|.+++.+++...+.
T Consensus 146 -~~~~~~~~~~~~~~~l~ 162 (313)
T PRK05564 146 -IYKLNRLSKEEIEKFIS 162 (313)
T ss_pred -eeeCCCcCHHHHHHHHH
Confidence 68999999999988774
No 187
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=7.2e-09 Score=109.65 Aligned_cols=83 Identities=19% Similarity=0.311 Sum_probs=53.8
Q ss_pred hhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeee-ee--eeecCceeEeeccCCccc-------c
Q psy2406 268 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KY--GIIKTDHILFIASGAFHL-------A 337 (464)
Q Consensus 268 ~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~-~~--~~i~Tsnil~I~ag~f~~-------~ 337 (464)
..| .++|+||||+-.+-+ .+.+.|-+-||.+.+.. +. .+..-.+..+|+++|--. .
T Consensus 280 sLA-H~GVLFLDElpef~~-------------~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~ 345 (490)
T COG0606 280 SLA-HNGVLFLDELPEFKR-------------SILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPL 345 (490)
T ss_pred eee-cCCEEEeeccchhhH-------------HHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCC
Confidence 445 789999999976643 37789999998665543 21 122334445566543210 0
Q ss_pred C-----C-------CCCchhhhccCCeEEEcCCCCHHHH
Q psy2406 338 K-----P-------SDLIPELQGRFPIRVELDSLSISDF 364 (464)
Q Consensus 338 ~-----p-------~~f~PEfl~R~d~iV~f~~Lt~~el 364 (464)
+ | ..+.-.|+.|||..|..+.++..++
T Consensus 346 ~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~ 384 (490)
T COG0606 346 RRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGEL 384 (490)
T ss_pred CCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHh
Confidence 0 0 1367789999999999999985554
No 188
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=6.9e-09 Score=106.36 Aligned_cols=70 Identities=17% Similarity=0.307 Sum_probs=55.9
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+-|++|||+|++... .++.||+.||. ..++++||.++ .++..+.|.+++|+-
T Consensus 110 ~~kvviI~~a~~~~~~-------------a~NaLLK~LEE----------Pp~~~~~Il~t----~~~~~ll~TIrSRc~ 162 (329)
T PRK08058 110 NKKVYIIEHADKMTAS-------------AANSLLKFLEE----------PSGGTTAILLT----ENKHQILPTILSRCQ 162 (329)
T ss_pred CceEEEeehHhhhCHH-------------HHHHHHHHhcC----------CCCCceEEEEe----CChHhCcHHHHhhce
Confidence 4679999999999754 56799999995 22355666655 367789999999995
Q ss_pred eEEEcCCCCHHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMT 369 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~ 369 (464)
++.|.+++.+++.+++.
T Consensus 163 -~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 163 -VVEFRPLPPESLIQRLQ 179 (329)
T ss_pred -eeeCCCCCHHHHHHHHH
Confidence 57999999999988875
No 189
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=1.5e-08 Score=105.51 Aligned_cols=70 Identities=20% Similarity=0.401 Sum_probs=54.4
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+-||+|||+|.++.. .++.||+.||.. ..+.+||..+ .++..+.|.+++|+.
T Consensus 141 ~~kVviIDead~m~~~-------------aanaLLK~LEep----------p~~~~~IL~t----~~~~~llpti~SRc~ 193 (365)
T PRK07471 141 GWRVVIVDTADEMNAN-------------AANALLKVLEEP----------PARSLFLLVS----HAPARLLPTIRSRCR 193 (365)
T ss_pred CCEEEEEechHhcCHH-------------HHHHHHHHHhcC----------CCCeEEEEEE----CCchhchHHhhccce
Confidence 5679999999999754 667999999852 2234555544 356678899999996
Q ss_pred eEEEcCCCCHHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMT 369 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~ 369 (464)
. +.|.+|+.+++.+++.
T Consensus 194 ~-i~l~~l~~~~i~~~L~ 210 (365)
T PRK07471 194 K-LRLRPLAPEDVIDALA 210 (365)
T ss_pred E-EECCCCCHHHHHHHHH
Confidence 5 7999999999998885
No 190
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.90 E-value=4.1e-09 Score=111.03 Aligned_cols=130 Identities=18% Similarity=0.272 Sum_probs=86.5
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeee-eecCceeEeeccCCcccc---CCCCCchhhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLA---KPSDLIPELQ 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~-~i~Tsnil~I~ag~f~~~---~p~~f~PEfl 347 (464)
.+++||||||+.+.+. +|..|+.+|+.+.+....+ .-...++.+|++++.... ....|+++|.
T Consensus 233 ~~gtl~l~~i~~l~~~-------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~ 299 (445)
T TIGR02915 233 HGGTLFLDEIGDLPLN-------------LQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLF 299 (445)
T ss_pred CCCEEEEechhhCCHH-------------HHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHH
Confidence 6789999999999754 7889999998654432111 112346677787653321 1246899988
Q ss_pred ccCC-eEEEcCCCCHH--HHHHHHHhhHHHHHHHHHHHHhhcCce-eEeCHHHHHHHHHHhhccccCCCccChhHHHHHH
Q psy2406 348 GRFP-IRVELDSLSIS--DFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 423 (464)
Q Consensus 348 ~R~d-~iV~f~~Lt~~--el~~Il~~~~~~ll~~~~~ll~~~gi~-L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~I 423 (464)
.|+. ..|.++||.+. ++..++ ..++.++.. ..+.. ..++++|+..|..+.. -+..|.|+++|
T Consensus 300 ~~l~~~~i~lPpLr~R~~Di~~l~----~~~l~~~~~---~~~~~~~~~~~~a~~~L~~~~w-------pgNvreL~~~i 365 (445)
T TIGR02915 300 YRIAEISITIPPLRSRDGDAVLLA----NAFLERFAR---ELKRKTKGFTDDALRALEAHAW-------PGNVRELENKV 365 (445)
T ss_pred HHhccceecCCCchhchhhHHHHH----HHHHHHHHH---HhCCCCCCCCHHHHHHHHhCCC-------CChHHHHHHHH
Confidence 8875 44677888653 344444 334444433 22333 5789999999987665 47899999999
Q ss_pred HHHHH
Q psy2406 424 EKLLE 428 (464)
Q Consensus 424 E~~l~ 428 (464)
++.+.
T Consensus 366 ~~a~~ 370 (445)
T TIGR02915 366 KRAVI 370 (445)
T ss_pred HHHHH
Confidence 98764
No 191
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.3e-08 Score=113.86 Aligned_cols=112 Identities=22% Similarity=0.329 Sum_probs=76.3
Q ss_pred hhccCCcEEEEeccccccCcCCCCCC-CCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccC-CCCCchh
Q psy2406 268 NNVEQNGIIFLDEIDKITTRSSQNNN-TDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAK-PSDLIPE 345 (464)
Q Consensus 268 ~~a~~~sVIfIDEIDK~~~~~~~~~~-~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~-p~~f~PE 345 (464)
+.+ ++-|+||||||-+-..+.+.++ -| ..|.|.|.|.-+.+ -.|++|+..--+ --.=+++
T Consensus 259 ~~~-~~vILFIDEiHtiVGAG~~~G~a~D-----AaNiLKPaLARGeL------------~~IGATT~~EYRk~iEKD~A 320 (786)
T COG0542 259 EKS-KNVILFIDEIHTIVGAGATEGGAMD-----AANLLKPALARGEL------------RCIGATTLDEYRKYIEKDAA 320 (786)
T ss_pred hcC-CCeEEEEechhhhcCCCcccccccc-----hhhhhHHHHhcCCe------------EEEEeccHHHHHHHhhhchH
Confidence 344 4789999999999876554221 23 44588888875443 456666432111 1124689
Q ss_pred hhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhcc
Q psy2406 346 LQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 407 (464)
Q Consensus 346 fl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~ 407 (464)
|-+||-. |.++.++.++-..||. .+-..|.. .+++ .++|+|+..-+..+..+
T Consensus 321 L~RRFQ~-V~V~EPs~e~ti~ILr----Glk~~yE~---hH~V--~i~D~Al~aAv~LS~RY 372 (786)
T COG0542 321 LERRFQK-VLVDEPSVEDTIAILR----GLKERYEA---HHGV--RITDEALVAAVTLSDRY 372 (786)
T ss_pred HHhcCce-eeCCCCCHHHHHHHHH----HHHHHHHH---ccCc--eecHHHHHHHHHHHHhh
Confidence 9999976 6999999999999994 44444433 4554 88899999998888653
No 192
>PRK15115 response regulator GlrR; Provisional
Probab=98.89 E-value=5.3e-09 Score=110.13 Aligned_cols=130 Identities=19% Similarity=0.269 Sum_probs=85.3
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee-eeecCceeEeeccCCcccc---CCCCCchhhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHLA---KPSDLIPELQ 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~-~~i~Tsnil~I~ag~f~~~---~p~~f~PEfl 347 (464)
..+.|||||||.+.+. +|..|+.+|+.+.+..-. ......++.+|++++.... ....|+++|.
T Consensus 228 ~~gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~ 294 (444)
T PRK15115 228 EGGTLFLDEIGDMPAP-------------LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLY 294 (444)
T ss_pred CCCEEEEEccccCCHH-------------HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHH
Confidence 5789999999999765 778999999865442211 1122346778887753221 1236888888
Q ss_pred ccCCe-EEEcCCCCH--HHHHHHHHhhHHHHHHHHHHHHhhcCce-eEeCHHHHHHHHHHhhccccCCCccChhHHHHHH
Q psy2406 348 GRFPI-RVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 423 (464)
Q Consensus 348 ~R~d~-iV~f~~Lt~--~el~~Il~~~~~~ll~~~~~ll~~~gi~-L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~I 423 (464)
.|+.. .|.++||.+ +++..++ ..++.++.. ..+.. ..++++|++.|..+.. -+..|.|+++|
T Consensus 295 ~~l~~~~i~lPpLr~R~eDi~~l~----~~~l~~~~~---~~~~~~~~~~~~a~~~L~~~~W-------pgNvreL~~~i 360 (444)
T PRK15115 295 YRLNVVSLKIPALAERTEDIPLLA----NHLLRQAAE---RHKPFVRAFSTDAMKRLMTASW-------PGNVRQLVNVI 360 (444)
T ss_pred HhhceeeecCCChHhccccHHHHH----HHHHHHHHH---HhCCCCCCcCHHHHHHHHhCCC-------CChHHHHHHHH
Confidence 88764 456677765 3455554 334444322 23333 3689999999996665 47899999999
Q ss_pred HHHHH
Q psy2406 424 EKLLE 428 (464)
Q Consensus 424 E~~l~ 428 (464)
++.+.
T Consensus 361 ~~~~~ 365 (444)
T PRK15115 361 EQCVA 365 (444)
T ss_pred HHHHH
Confidence 98764
No 193
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.89 E-value=1.1e-08 Score=109.57 Aligned_cols=130 Identities=18% Similarity=0.297 Sum_probs=84.9
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeee-eecCceeEeeccCCccccC---CCCCchhhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLAK---PSDLIPELQ 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~-~i~Tsnil~I~ag~f~~~~---p~~f~PEfl 347 (464)
..+-||+|||-.+... .|.-||.+|+.+.+---.+ ..-..++-+|+|++.+..+ ...|+..|.
T Consensus 340 ~gGTLFLDEIgempl~-------------LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLY 406 (560)
T COG3829 340 NGGTLFLDEIGEMPLP-------------LQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLY 406 (560)
T ss_pred cCCeEEehhhccCCHH-------------HHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHHHhcCcchhhhe
Confidence 7899999999988644 7889999997544321111 1123456788888643221 235777776
Q ss_pred ccCCeE-EEcCCCCH--HHHHHHHHhhHHHHHHHHHHHHhhcCceeE-eCHHHHHHHHHHhhccccCCCccChhHHHHHH
Q psy2406 348 GRFPIR-VELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKIE-FVDDGIQRLAEIAYCINERTENIGARRLYTAM 423 (464)
Q Consensus 348 ~R~d~i-V~f~~Lt~--~el~~Il~~~~~~ll~~~~~ll~~~gi~L~-~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~I 423 (464)
=|+.++ |.++||-+ +|+..++ ..+++++.+.+ +-.+. ++++|+..|.++.. -+..|-|.++|
T Consensus 407 YRLNV~~i~iPPLReR~eDI~~L~----~~Fl~k~s~~~---~~~v~~ls~~a~~~L~~y~W-------PGNVRELeNvi 472 (560)
T COG3829 407 YRLNVIPITIPPLRERKEDIPLLA----EYFLDKFSRRY---GRNVKGLSPDALALLLRYDW-------PGNVRELENVI 472 (560)
T ss_pred eeeceeeecCCCcccCcchHHHHH----HHHHHHHHHHc---CCCcccCCHHHHHHHHhCCC-------CchHHHHHHHH
Confidence 666553 34555542 4455444 45666655543 44455 89999999986554 58899999999
Q ss_pred HHHHH
Q psy2406 424 EKLLE 428 (464)
Q Consensus 424 E~~l~ 428 (464)
|+.+.
T Consensus 473 ER~v~ 477 (560)
T COG3829 473 ERAVN 477 (560)
T ss_pred HHHHh
Confidence 99874
No 194
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.89 E-value=1.1e-09 Score=105.33 Aligned_cols=83 Identities=25% Similarity=0.360 Sum_probs=34.3
Q ss_pred HhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeee-ee--eeecCceeEeeccCCc------cc-
Q psy2406 267 INNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KY--GIIKTDHILFIASGAF------HL- 336 (464)
Q Consensus 267 v~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~-~~--~~i~Tsnil~I~ag~f------~~- 336 (464)
+..| ..+|+|+||+--+.+ .+.+.|++.||.+.+.. +. ....-.+.++|+|.+- ..
T Consensus 102 islA-h~GVLflDE~~ef~~-------------~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~ 167 (206)
T PF01078_consen 102 ISLA-HRGVLFLDELNEFDR-------------SVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDP 167 (206)
T ss_dssp GGGG-TTSEEEECETTTS-H-------------HHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S---------
T ss_pred HHHh-cCCEEEechhhhcCH-------------HHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEeccccccccccc
Confidence 3667 789999999987754 37789999998655543 33 2334456677776431 10
Q ss_pred cC-----C-------CCCchhhhccCCeEEEcCCCCHHH
Q psy2406 337 AK-----P-------SDLIPELQGRFPIRVELDSLSISD 363 (464)
Q Consensus 337 ~~-----p-------~~f~PEfl~R~d~iV~f~~Lt~~e 363 (464)
.+ + ..+.-+|+.|||..|.+++++.++
T Consensus 168 ~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 168 DNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp ---------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccCC
Confidence 00 1 137788999999999998887653
No 195
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=98.88 E-value=5e-09 Score=85.88 Aligned_cols=66 Identities=32% Similarity=0.396 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcc
Q psy2406 359 LSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN 433 (464)
Q Consensus 359 Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~ 433 (464)
|+.+++.+|+. ..+.++.+++..+|+.+.++++++++|++.|+++ .+|||+|+++|++.+.+++++
T Consensus 1 L~~~~l~~I~~----~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~-----~~GAR~l~r~i~~~i~~~la~ 66 (81)
T PF10431_consen 1 LSEEDLEKIAD----LQLKKLNERLKEKGIELEFDDAVVDYLAEKGYDP-----EYGARPLRRIIEREIEPPLAD 66 (81)
T ss_dssp --HHHHHHHHH----SHHHHHHHHHHHTTEEEEE-HHHHHHHHHHHHHT-----TTTTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH----HHHHHHHHHHHHCCCeEEecHHHHHHHHHhCccc-----CCCHHHHHHHHHHHHHHHHHH
Confidence 68899999995 5788888888889999999999999999999998 899999999999999988765
No 196
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.87 E-value=2.7e-08 Score=112.75 Aligned_cols=81 Identities=25% Similarity=0.314 Sum_probs=55.2
Q ss_pred hhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeee-eeeee--cCceeEeeccCCcccc-----C-
Q psy2406 268 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGII--KTDHILFIASGAFHLA-----K- 338 (464)
Q Consensus 268 ~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~-~~~~i--~Tsnil~I~ag~f~~~-----~- 338 (464)
..| ..+++||||||++... .|..|+++|+..++++ +.|+. ...+..+|+|++.... +
T Consensus 554 vlA-dgGtL~IDEidkms~~-------------~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s 619 (915)
T PTZ00111 554 VLA-NGGVCCIDELDKCHNE-------------SRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKA 619 (915)
T ss_pred EEc-CCCeEEecchhhCCHH-------------HHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccC
Confidence 445 6799999999999754 6779999999887764 33433 2355677777643211 1
Q ss_pred ---CCCCchhhhccCCeEEEc-CCCCHH
Q psy2406 339 ---PSDLIPELQGRFPIRVEL-DSLSIS 362 (464)
Q Consensus 339 ---p~~f~PEfl~R~d~iV~f-~~Lt~~ 362 (464)
.-.|+|++++|||.++.+ ..++++
T Consensus 620 ~~eni~Lp~~LLSRFDLIf~l~D~~d~~ 647 (915)
T PTZ00111 620 VIENINISPSLFTRFDLIYLVLDHIDQD 647 (915)
T ss_pred cccccCCChHHhhhhcEEEEecCCCChH
Confidence 125899999999988654 444443
No 197
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.85 E-value=3.7e-08 Score=108.92 Aligned_cols=69 Identities=10% Similarity=0.154 Sum_probs=47.0
Q ss_pred chhhhc--cCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEe-CHHHHHHHHHHhhccccCCCccChhHH
Q psy2406 343 IPELQG--RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEF-VDDGIQRLAEIAYCINERTENIGARRL 419 (464)
Q Consensus 343 ~PEfl~--R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~-sdeAl~~LA~~a~~~~~~~~~~GAR~L 419 (464)
.|++++ |+. +|.|+|++...+.+.|.. .+.+.... .+....+ +++++..|+..+ .+++|..
T Consensus 257 ~~eLls~~rv~-~I~FnPia~t~l~K~L~r----Il~~E~~~---~~~~~~~p~~~~l~~I~~~s--------~GDiRsA 320 (637)
T TIGR00602 257 NKEILEEPRVS-NISFNPIAPTIMKKFLNR----IVTIEAKK---NGEKIKVPKKTSVELLCQGC--------SGDIRSA 320 (637)
T ss_pred CHhHhccccee-EEEeCCCCHHHHHHHHHH----HHHhhhhc---cccccccCCHHHHHHHHHhC--------CChHHHH
Confidence 389997 664 579999999998888852 22221111 1122333 678999998755 6899999
Q ss_pred HHHHHHHH
Q psy2406 420 YTAMEKLL 427 (464)
Q Consensus 420 ~r~IE~~l 427 (464)
-+.+|-..
T Consensus 321 In~LQf~~ 328 (637)
T TIGR00602 321 INSLQFSS 328 (637)
T ss_pred HHHHHHHH
Confidence 99888643
No 198
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=5.2e-08 Score=99.53 Aligned_cols=69 Identities=14% Similarity=0.324 Sum_probs=54.7
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.|++||++|+++.. .++.||+.||.-. +.+||..+ +++..+.|.++||+-
T Consensus 124 ~~kVvII~~ae~m~~~-------------aaNaLLK~LEEPp-----------~~~fILi~----~~~~~Ll~TI~SRcq 175 (314)
T PRK07399 124 PRKVVVIEDAETMNEA-------------AANALLKTLEEPG-----------NGTLILIA----PSPESLLPTIVSRCQ 175 (314)
T ss_pred CceEEEEEchhhcCHH-------------HHHHHHHHHhCCC-----------CCeEEEEE----CChHhCcHHHHhhce
Confidence 5779999999999754 5679999998521 23455543 367789999999995
Q ss_pred eEEEcCCCCHHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMT 369 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~ 369 (464)
++.|.+++.+++.+++.
T Consensus 176 -~i~f~~l~~~~~~~~L~ 192 (314)
T PRK07399 176 -IIPFYRLSDEQLEQVLK 192 (314)
T ss_pred -EEecCCCCHHHHHHHHH
Confidence 57999999999999885
No 199
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.85 E-value=7.8e-08 Score=100.62 Aligned_cols=157 Identities=18% Similarity=0.273 Sum_probs=95.6
Q ss_pred hhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCc--eeeeeee-eecCceeEeeccCCccccCC--CCC
Q psy2406 268 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGT--TVNTKYG-IIKTDHILFIASGAFHLAKP--SDL 342 (464)
Q Consensus 268 ~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~--~v~~~~~-~i~Tsnil~I~ag~f~~~~p--~~f 342 (464)
.+| ..+|++||||--+.. .+|+.||.+++.+ ++.-... +-+-.+.++|+|. || .++
T Consensus 141 a~A-nRGIlYvDEvnlL~d-------------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTm-----NPEeGeL 201 (423)
T COG1239 141 ARA-NRGILYVDEVNLLDD-------------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTM-----NPEEGEL 201 (423)
T ss_pred hhc-cCCEEEEeccccccH-------------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeec-----Ccccccc
Confidence 566 789999999988863 3889999999743 3322222 3356777888886 55 479
Q ss_pred chhhhccCCeEEEcCCCC-HHHHHHHHHhhHH------HHHHHHHH---HH------hhcC-ceeEeCHHHHHHHHHHhh
Q psy2406 343 IPELQGRFPIRVELDSLS-ISDFTRIMTSTNV------CLTKQYEA---LL------ATEG-IKIEFVDDGIQRLAEIAY 405 (464)
Q Consensus 343 ~PEfl~R~d~iV~f~~Lt-~~el~~Il~~~~~------~ll~~~~~---ll------~~~g-i~L~~sdeAl~~LA~~a~ 405 (464)
+|.|+.||...|...+++ .++...|+..... .+++++.. .+ +..+ ....+++++..+++..+.
T Consensus 202 rpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~ 281 (423)
T COG1239 202 RPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCA 281 (423)
T ss_pred chhhHhhhcceeeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHH
Confidence 999999999988877654 5555666643221 01222211 11 2222 357888999999999987
Q ss_pred ccccCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHh
Q psy2406 406 CINERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRL 450 (464)
Q Consensus 406 ~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~ 450 (464)
.. ...|-|+--.+..-.- . .....+...++.++++...
T Consensus 282 ~~----~v~g~radi~~~r~a~-a--~aa~~Gr~~v~~~Di~~a~ 319 (423)
T COG1239 282 RL----AVDGHRADIVVVRAAK-A--LAALRGRTEVEEEDIREAA 319 (423)
T ss_pred Hh----ccCCCchhhHHHHHHH-H--HHHhcCceeeehhhHHHHH
Confidence 64 2334455444433211 1 1122233466667776653
No 200
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.83 E-value=1.7e-08 Score=93.34 Aligned_cols=61 Identities=30% Similarity=0.517 Sum_probs=43.7
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
++-|++||++|++... .|++||+.||. ...|+.||..+ .++..+.|.++||+
T Consensus 102 ~~KviiI~~ad~l~~~-------------a~NaLLK~LEe----------pp~~~~fiL~t----~~~~~il~TI~SRc- 153 (162)
T PF13177_consen 102 KYKVIIIDEADKLTEE-------------AQNALLKTLEE----------PPENTYFILIT----NNPSKILPTIRSRC- 153 (162)
T ss_dssp SSEEEEEETGGGS-HH-------------HHHHHHHHHHS----------TTTTEEEEEEE----S-GGGS-HHHHTTS-
T ss_pred CceEEEeehHhhhhHH-------------HHHHHHHHhcC----------CCCCEEEEEEE----CChHHChHHHHhhc-
Confidence 5779999999999854 67899999985 23566777765 46788999999999
Q ss_pred eEEEcCCCC
Q psy2406 352 IRVELDSLS 360 (464)
Q Consensus 352 ~iV~f~~Lt 360 (464)
..+.|++|+
T Consensus 154 ~~i~~~~ls 162 (162)
T PF13177_consen 154 QVIRFRPLS 162 (162)
T ss_dssp EEEEE----
T ss_pred eEEecCCCC
Confidence 557998875
No 201
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=1.4e-08 Score=104.31 Aligned_cols=70 Identities=13% Similarity=0.263 Sum_probs=57.3
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+-|++|||+|+++.. .+|.||+.||.- ..+++||.++ .++..+.|.++||+-
T Consensus 106 ~~kv~iI~~a~~m~~~-------------aaNaLLK~LEEP----------p~~~~fiL~t----~~~~~ll~TI~SRc~ 158 (328)
T PRK05707 106 GRKVVLIEPAEAMNRN-------------AANALLKSLEEP----------SGDTVLLLIS----HQPSRLLPTIKSRCQ 158 (328)
T ss_pred CCeEEEECChhhCCHH-------------HHHHHHHHHhCC----------CCCeEEEEEE----CChhhCcHHHHhhce
Confidence 5679999999999854 567999999862 3456777765 478889999999996
Q ss_pred eEEEcCCCCHHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMT 369 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~ 369 (464)
. +.|.+++.+++.+.+.
T Consensus 159 ~-~~~~~~~~~~~~~~L~ 175 (328)
T PRK05707 159 Q-QACPLPSNEESLQWLQ 175 (328)
T ss_pred e-eeCCCcCHHHHHHHHH
Confidence 5 7999999999988875
No 202
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.81 E-value=8.6e-08 Score=100.75 Aligned_cols=90 Identities=24% Similarity=0.247 Sum_probs=64.6
Q ss_pred CCchhhhccCC--eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhH
Q psy2406 341 DLIPELQGRFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARR 418 (464)
Q Consensus 341 ~f~PEfl~R~d--~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~ 418 (464)
.+.|-|.+||. .++.+.||+.+.+..||. +.....++ .++++++.+||++.. ...|.
T Consensus 224 ~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~-----------kka~~~~~--~i~~ev~~~la~~~~--------~nvRe 282 (408)
T COG0593 224 GLEDRLRSRLEWGLVVEIEPPDDETRLAILR-----------KKAEDRGI--EIPDEVLEFLAKRLD--------RNVRE 282 (408)
T ss_pred cccHHHHHHHhceeEEeeCCCCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHHhh--------ccHHH
Confidence 36688999985 578899999999999984 12334454 888999999999885 46799
Q ss_pred HHHHHHHHHHHHhcccCCCceeecHHHHHhHhCCCCC
Q psy2406 419 LYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGDLSI 455 (464)
Q Consensus 419 L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~~~~~~ 455 (464)
|..+++++.....+.. ..||.+.+++.+.....
T Consensus 283 LegaL~~l~~~a~~~~----~~iTi~~v~e~L~~~~~ 315 (408)
T COG0593 283 LEGALNRLDAFALFTK----RAITIDLVKEILKDLLR 315 (408)
T ss_pred HHHHHHHHHHHHHhcC----ccCcHHHHHHHHHHhhc
Confidence 9888888766544332 24666666665554443
No 203
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.80 E-value=3.9e-08 Score=101.82 Aligned_cols=113 Identities=20% Similarity=0.186 Sum_probs=70.3
Q ss_pred HHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee--eeecCceeEeeccCCccc---cCCC
Q psy2406 266 AINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY--GIIKTDHILFIASGAFHL---AKPS 340 (464)
Q Consensus 266 Av~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~--~~i~Tsnil~I~ag~f~~---~~p~ 340 (464)
++.++ ..||+-|+||.|+..+ .++.||.+++.+.+.... +.+..+. ++|++++-.- -+..
T Consensus 231 ~l~~a-NrGi~~f~Ei~K~~~~-------------~l~~LL~~~qE~~v~~~~~~~~~~~d~-liia~sNe~e~~~~~~~ 295 (361)
T smart00763 231 ALNRA-NRGILEFVEMFKADIK-------------FLHPLLTATQEGNIKGTGGFAMIPIDG-LIIAHSNESEWQRFKSN 295 (361)
T ss_pred ccccc-cCceEEEeehhcCCHH-------------HHHHHhhhhhcceEecCCcccccccce-EEEEeCCHHHHhhhhcc
Confidence 34666 6799999999999865 777999999876665432 2333333 5666654210 0012
Q ss_pred CCchhhhccCCeEEEcCCCCH-HHHHHHHHhhHHHHHHHHHHHHhhc-CceeEeCHHHHHHHHHHhh
Q psy2406 341 DLIPELQGRFPIRVELDSLSI-SDFTRIMTSTNVCLTKQYEALLATE-GIKIEFVDDGIQRLAEIAY 405 (464)
Q Consensus 341 ~f~PEfl~R~d~iV~f~~Lt~-~el~~Il~~~~~~ll~~~~~ll~~~-gi~L~~sdeAl~~LA~~a~ 405 (464)
....+|++||. +|.++.+.. .+=.+|. ++.+... -....+.+-+++.+|..+.
T Consensus 296 k~~eaf~dR~~-~i~vpY~l~~~~E~~Iy-----------~k~~~~s~~~~~~~aP~~le~aa~~av 350 (361)
T smart00763 296 KKNEALLDRII-KVKVPYCLRVSEEAQIY-----------EKLLRNSDLTEAHIAPHTLEMAALFSV 350 (361)
T ss_pred ccchhhhhceE-EEeCCCcCCHHHHHHHH-----------HHHhccCcCcccccCchHHHHHHHHHH
Confidence 34678999998 456665554 3333333 3333322 2356788888888887764
No 204
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.77 E-value=2.6e-08 Score=104.47 Aligned_cols=130 Identities=20% Similarity=0.263 Sum_probs=85.1
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee-eeecCceeEeeccCCccc---cCCCCCchhhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHL---AKPSDLIPELQ 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~-~~i~Tsnil~I~ag~f~~---~~p~~f~PEfl 347 (464)
.++++||||||.+.+. +|..|+..++.+.+.... ......++.+|++++... ..+..|++.|.
T Consensus 233 ~~gtl~ldei~~l~~~-------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~ 299 (441)
T PRK10365 233 DGGTLFLDEIGDISPM-------------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 (441)
T ss_pred CCCEEEEeccccCCHH-------------HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHH
Confidence 6899999999999864 777899999865443211 111223456677764321 12346888888
Q ss_pred ccCCe-EEEcCCCCHH--HHHHHHHhhHHHHHHHHHHHHhhcCce-eEeCHHHHHHHHHHhhccccCCCccChhHHHHHH
Q psy2406 348 GRFPI-RVELDSLSIS--DFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 423 (464)
Q Consensus 348 ~R~d~-iV~f~~Lt~~--el~~Il~~~~~~ll~~~~~ll~~~gi~-L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~I 423 (464)
.|+.. .|.++||.+. ++..++ ..++.++... .+.. ..++++|+..|..+.. .+..|.|++++
T Consensus 300 ~~l~~~~i~~ppLreR~~Di~~l~----~~~l~~~~~~---~~~~~~~~~~~a~~~L~~~~w-------pgN~reL~~~~ 365 (441)
T PRK10365 300 YRLNVVAIEVPSLRQRREDIPLLA----GHFLQRFAER---NRKAVKGFTPQAMDLLIHYDW-------PGNIRELENAV 365 (441)
T ss_pred HHhccceecCCChhhcchhHHHHH----HHHHHHHHHH---hCCCCCCcCHHHHHHHHhCCC-------CCHHHHHHHHH
Confidence 88854 4567777753 555555 3344443322 2322 4589999999997765 47899999999
Q ss_pred HHHHH
Q psy2406 424 EKLLE 428 (464)
Q Consensus 424 E~~l~ 428 (464)
++.+.
T Consensus 366 ~~~~~ 370 (441)
T PRK10365 366 ERAVV 370 (441)
T ss_pred HHHHH
Confidence 98664
No 205
>KOG0991|consensus
Probab=98.76 E-value=3.7e-08 Score=96.29 Aligned_cols=107 Identities=22% Similarity=0.350 Sum_probs=73.9
Q ss_pred CcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCCe
Q psy2406 273 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 352 (464)
Q Consensus 273 ~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d~ 352 (464)
.-||.+||.|++.. |.||+|-..||= .++-.-|..++ +....+..++.+|+-.
T Consensus 114 hKIiILDEADSMT~-------------gAQQAlRRtMEi----------yS~ttRFalaC----N~s~KIiEPIQSRCAi 166 (333)
T KOG0991|consen 114 HKIIILDEADSMTA-------------GAQQALRRTMEI----------YSNTTRFALAC----NQSEKIIEPIQSRCAI 166 (333)
T ss_pred eeEEEeeccchhhh-------------HHHHHHHHHHHH----------Hcccchhhhhh----cchhhhhhhHHhhhHh
Confidence 45999999999863 477888887772 11222333333 2344577789999965
Q ss_pred EEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHH
Q psy2406 353 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 428 (464)
Q Consensus 353 iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~ 428 (464)
..|..|+..++.+-+ ....+.+++ .++++.++.|.-.+ .++.|...+.++..+.
T Consensus 167 -LRysklsd~qiL~Rl-----------~~v~k~Ekv--~yt~dgLeaiifta--------~GDMRQalNnLQst~~ 220 (333)
T KOG0991|consen 167 -LRYSKLSDQQILKRL-----------LEVAKAEKV--NYTDDGLEAIIFTA--------QGDMRQALNNLQSTVN 220 (333)
T ss_pred -hhhcccCHHHHHHHH-----------HHHHHHhCC--CCCcchHHHhhhhc--------cchHHHHHHHHHHHhc
Confidence 699999987755443 222233444 78899999999777 5789988888887654
No 206
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.67 E-value=3.6e-07 Score=90.13 Aligned_cols=80 Identities=23% Similarity=0.360 Sum_probs=50.4
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCcc-------ccC------
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFH-------LAK------ 338 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~-------~~~------ 338 (464)
.+=|||+|.+- ... .|. .-..|-.+|||+.-. .-+|+++.+|++.. ..+
T Consensus 106 ~kFIlf~DDLs--Fe~------~d~----~yk~LKs~LeGgle~------~P~NvliyATSNRRHLv~E~~~d~~~~~~~ 167 (249)
T PF05673_consen 106 YKFILFCDDLS--FEE------GDT----EYKALKSVLEGGLEA------RPDNVLIYATSNRRHLVPESFSDREDIQDD 167 (249)
T ss_pred CCEEEEecCCC--CCC------CcH----HHHHHHHHhcCcccc------CCCcEEEEEecchhhccchhhhhccCCCcc
Confidence 45699999643 211 111 224788889986432 34677666665421 011
Q ss_pred ---CCCCc---hhhhccCCeEEEcCCCCHHHHHHHHH
Q psy2406 339 ---PSDLI---PELQGRFPIRVELDSLSISDFTRIMT 369 (464)
Q Consensus 339 ---p~~f~---PEfl~R~d~iV~f~~Lt~~el~~Il~ 369 (464)
+.+-. -.|-.||...+.|.+++.++..+|++
T Consensus 168 eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~ 204 (249)
T PF05673_consen 168 EIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVR 204 (249)
T ss_pred ccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHH
Confidence 11111 24679999999999999999999994
No 207
>KOG2170|consensus
Probab=98.67 E-value=3.7e-07 Score=91.99 Aligned_cols=62 Identities=15% Similarity=-0.035 Sum_probs=49.5
Q ss_pred cCchhHhhhhhhcchhHHHHhhhhhcccccccCCCCCCccccccCCCcceEEEecCCCchHHHHHHHHHHh
Q psy2406 25 APSANNLRNKFGIRKAILKASVYIDAPNTRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 25 ~~~~~~~l~~~~igq~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
+-.++.-|+....||..++..|..+++--..+-. +. .|--+-|+|+|||||...++.||+-+
T Consensus 73 ~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~-p~--------KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 73 LDGLEKDLARALFGQHLAKQLVVNALKSHWANPN-PR--------KPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCC-CC--------CCeEEEecCCCCCchhHHHHHHHHHH
Confidence 4447778889999999999999998776655432 22 34458899999999999999999876
No 208
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.67 E-value=5.9e-08 Score=82.25 Aligned_cols=37 Identities=30% Similarity=0.280 Sum_probs=32.0
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCC---eEEeecCcee
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAP---FIKIEATKFT 108 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~---~i~ld~s~~~ 108 (464)
..++|+||||||||++++.+|..+..+ ++.++++...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 569999999999999999999999876 7877776554
No 209
>KOG1969|consensus
Probab=98.67 E-value=3.6e-07 Score=100.60 Aligned_cols=36 Identities=22% Similarity=0.192 Sum_probs=33.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCce
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKF 107 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~ 107 (464)
+-+||+||||-||||||+.+|+..|..++.+++|.-
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEINASDe 362 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDE 362 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEeccccc
Confidence 568999999999999999999999999999999865
No 210
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=1.1e-07 Score=98.38 Aligned_cols=70 Identities=13% Similarity=0.214 Sum_probs=58.2
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+-|++||+.|+++.. .+|.||+.||. ...+++||..+ .+|..+.|.++||+
T Consensus 132 ~~kV~iI~~ae~m~~~-------------AaNaLLKtLEE----------Pp~~t~fiL~t----~~~~~LLpTI~SRc- 183 (342)
T PRK06964 132 GARVVVLYPAEALNVA-------------AANALLKTLEE----------PPPGTVFLLVS----ARIDRLLPTILSRC- 183 (342)
T ss_pred CceEEEEechhhcCHH-------------HHHHHHHHhcC----------CCcCcEEEEEE----CChhhCcHHHHhcC-
Confidence 4669999999999865 56799999995 34566777776 47889999999999
Q ss_pred eEEEcCCCCHHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMT 369 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~ 369 (464)
..+.|.+++.+++.+.+.
T Consensus 184 q~i~~~~~~~~~~~~~L~ 201 (342)
T PRK06964 184 RQFPMTVPAPEAAAAWLA 201 (342)
T ss_pred EEEEecCCCHHHHHHHHH
Confidence 568999999999998885
No 211
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.61 E-value=2.5e-07 Score=98.50 Aligned_cols=133 Identities=17% Similarity=0.258 Sum_probs=85.7
Q ss_pred hccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee-eeecCceeEeeccCCcccc---CCCCCch
Q psy2406 269 NVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHLA---KPSDLIP 344 (464)
Q Consensus 269 ~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~-~~i~Tsnil~I~ag~f~~~---~p~~f~P 344 (464)
.| ..+-+|+|||--+... +|--||-+|..+.+.--. -....-++-+|+||+.+.. ....|+.
T Consensus 315 lA-dGGTLFLDEIGelPL~-------------lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V~~G~FRa 380 (550)
T COG3604 315 LA-DGGTLFLDEIGELPLA-------------LQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMVRDGEFRA 380 (550)
T ss_pred ec-CCCeEechhhccCCHH-------------HHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHHHcCcchh
Confidence 34 7899999999888654 677899888633322100 0111224578899865432 2345888
Q ss_pred hhhccCCeE-EEcCCCCH--HHHHHHHHhhHHHHHHHHHHHHhhcCc-eeEeCHHHHHHHHHHhhccccCCCccChhHHH
Q psy2406 345 ELQGRFPIR-VELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGI-KIEFVDDGIQRLAEIAYCINERTENIGARRLY 420 (464)
Q Consensus 345 Efl~R~d~i-V~f~~Lt~--~el~~Il~~~~~~ll~~~~~ll~~~gi-~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~ 420 (464)
.|.=|++++ +.++||-+ +|+--.. ..+++++.. ..|. .+.++++|++.|.+..+ -+..|-|.
T Consensus 381 DLYyRLsV~Pl~lPPLRER~~DIplLA----~~Fle~~~~---~~gr~~l~ls~~Al~~L~~y~w-------PGNVRELe 446 (550)
T COG3604 381 DLYYRLSVFPLELPPLRERPEDIPLLA----GYFLEKFRR---RLGRAILSLSAEALELLSSYEW-------PGNVRELE 446 (550)
T ss_pred hhhhcccccccCCCCcccCCccHHHHH----HHHHHHHHH---hcCCcccccCHHHHHHHHcCCC-------CCcHHHHH
Confidence 888787764 23445543 2222222 345554444 3466 78999999999998777 47899999
Q ss_pred HHHHHHHHH
Q psy2406 421 TAMEKLLEE 429 (464)
Q Consensus 421 r~IE~~l~~ 429 (464)
++|++....
T Consensus 447 n~veRavll 455 (550)
T COG3604 447 NVVERAVLL 455 (550)
T ss_pred HHHHHHHHH
Confidence 999987653
No 212
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.59 E-value=1e-06 Score=96.90 Aligned_cols=154 Identities=14% Similarity=0.154 Sum_probs=98.5
Q ss_pred hhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeee-eee--eecCceeEeeccCCccccCCCCCch
Q psy2406 268 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYG--IIKTDHILFIASGAFHLAKPSDLIP 344 (464)
Q Consensus 268 ~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~-~~~--~i~Tsnil~I~ag~f~~~~p~~f~P 344 (464)
..| ..+|+||||+..+.+. +++.|++.|+.+.++. +.+ .-.-.+.++|++.+- ...-+.+++
T Consensus 90 a~A-h~GvL~lDe~n~~~~~-------------~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~-~~~~~~L~~ 154 (584)
T PRK13406 90 AEA-DGGVLVLAMAERLEPG-------------TAARLAAALDTGEVRLERDGLALRLPARFGLVALDEG-AEEDERAPA 154 (584)
T ss_pred eec-cCCEEEecCcccCCHH-------------HHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCC-hhcccCCCH
Confidence 445 7899999999998754 7889999998766654 322 223345566775210 001134888
Q ss_pred hhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCcc-ChhHHHHHH
Q psy2406 345 ELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENI-GARRLYTAM 423 (464)
Q Consensus 345 Efl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~-GAR~L~r~I 423 (464)
.++.||+..|.+..++..+...-... ...+...++++ . +..++++.++++++.+... +. |.|.-..++
T Consensus 155 ~lLDRf~l~v~v~~~~~~~~~~~~~~--~~~I~~AR~rl--~--~v~v~~~~l~~i~~~~~~~-----gv~S~Ra~i~ll 223 (584)
T PRK13406 155 ALADRLAFHLDLDGLALRDAREIPID--ADDIAAARARL--P--AVGPPPEAIAALCAAAAAL-----GIASLRAPLLAL 223 (584)
T ss_pred HhHhheEEEEEcCCCChHHhcccCCC--HHHHHHHHHHH--c--cCCCCHHHHHHHHHHHHHh-----CCCCcCHHHHHH
Confidence 99999999999999998776432111 11222233333 2 4688999999999888754 33 668877776
Q ss_pred HHHHHHHhcccCCCceeecHHHHHhHh
Q psy2406 424 EKLLEEVSFNSNNISLLVDADYVNSRL 450 (464)
Q Consensus 424 E~~l~~~l~~~~~~~v~I~~e~v~~~~ 450 (464)
.-. ..+..+.+. -.|+.++|..+.
T Consensus 224 raA--Ra~AaL~Gr-~~V~~~dv~~Aa 247 (584)
T PRK13406 224 RAA--RAAAALAGR-TAVEEEDLALAA 247 (584)
T ss_pred HHH--HHHHHHcCC-CCCCHHHHHHHH
Confidence 532 122233333 367888887664
No 213
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=2.7e-07 Score=94.81 Aligned_cols=70 Identities=13% Similarity=0.258 Sum_probs=57.7
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+-|++||+.|+++.. .+|.||+.||. ...+++||.++ .++..+.|.++||+-
T Consensus 107 ~~KV~iI~~a~~m~~~-------------AaNaLLKtLEE----------Pp~~~~fiL~t----~~~~~llpTI~SRC~ 159 (325)
T PRK06871 107 GNKVVYIQGAERLTEA-------------AANALLKTLEE----------PRPNTYFLLQA----DLSAALLPTIYSRCQ 159 (325)
T ss_pred CceEEEEechhhhCHH-------------HHHHHHHHhcC----------CCCCeEEEEEE----CChHhCchHHHhhce
Confidence 4669999999999854 56799999996 34566777765 478889999999995
Q ss_pred eEEEcCCCCHHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMT 369 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~ 369 (464)
.+.|++++.+++.+.|.
T Consensus 160 -~~~~~~~~~~~~~~~L~ 176 (325)
T PRK06871 160 -TWLIHPPEEQQALDWLQ 176 (325)
T ss_pred -EEeCCCCCHHHHHHHHH
Confidence 57999999999988775
No 214
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=4.6e-07 Score=93.39 Aligned_cols=70 Identities=16% Similarity=0.250 Sum_probs=57.0
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+-|++||+.|+++.. -+|.||+.||. ...+++||..+ .++..+.|..+||+-
T Consensus 108 ~~kV~iI~~ae~m~~~-------------AaNaLLKtLEE----------Pp~~t~fiL~t----~~~~~lLpTIrSRCq 160 (334)
T PRK07993 108 GAKVVWLPDAALLTDA-------------AANALLKTLEE----------PPENTWFFLAC----REPARLLATLRSRCR 160 (334)
T ss_pred CceEEEEcchHhhCHH-------------HHHHHHHHhcC----------CCCCeEEEEEE----CChhhChHHHHhccc
Confidence 5679999999999854 56799999995 23456777765 478889999999997
Q ss_pred eEEEcCCCCHHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMT 369 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~ 369 (464)
. +.|.+++.+++...+.
T Consensus 161 ~-~~~~~~~~~~~~~~L~ 177 (334)
T PRK07993 161 L-HYLAPPPEQYALTWLS 177 (334)
T ss_pred c-ccCCCCCHHHHHHHHH
Confidence 5 7999999998887763
No 215
>KOG0736|consensus
Probab=98.56 E-value=2.8e-07 Score=101.87 Aligned_cols=85 Identities=21% Similarity=0.291 Sum_probs=59.2
Q ss_pred cCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccC
Q psy2406 271 EQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF 350 (464)
Q Consensus 271 ~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~ 350 (464)
.+|+||||=-+|-+..+..+ +.|..--.+.+.+++ .|.. ......++||+++ ++..+++|.+++=|
T Consensus 489 ~~pavifl~~~dvl~id~dg--ged~rl~~~i~~~ls-~e~~-------~~~~~~~ivv~t~----~s~~~lp~~i~~~f 554 (953)
T KOG0736|consen 489 CSPAVLFLRNLDVLGIDQDG--GEDARLLKVIRHLLS-NEDF-------KFSCPPVIVVATT----SSIEDLPADIQSLF 554 (953)
T ss_pred cCceEEEEeccceeeecCCC--chhHHHHHHHHHHHh-cccc-------cCCCCceEEEEec----cccccCCHHHHHhh
Confidence 48999999999998855433 222222223333333 2221 2245567888886 46678999999999
Q ss_pred CeEEEcCCCCHHHHHHHHH
Q psy2406 351 PIRVELDSLSISDFTRIMT 369 (464)
Q Consensus 351 d~iV~f~~Lt~~el~~Il~ 369 (464)
...+.+..|+++++.+|++
T Consensus 555 ~~ei~~~~lse~qRl~iLq 573 (953)
T KOG0736|consen 555 LHEIEVPALSEEQRLEILQ 573 (953)
T ss_pred hhhccCCCCCHHHHHHHHH
Confidence 9999999999999999985
No 216
>KOG2680|consensus
Probab=98.54 E-value=4e-07 Score=91.81 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=72.1
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCcee-EeeccCCccccCCCCCchhhhccC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHI-LFIASGAFHLAKPSDLIPELQGRF 350 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsni-l~I~ag~f~~~~p~~f~PEfl~R~ 350 (464)
-|+|+||||+|-+.-...+ .|-..||+.-. +..++.|+.- ..|-.+ +...|..++-.|+.|+
T Consensus 288 vpGVLFIDEvHMLDIEcFs-------------FlNrAlE~d~~--PiiimaTNrgit~iRGT--n~~SphGiP~D~lDR~ 350 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLDIECFS-------------FLNRALENDMA--PIIIMATNRGITRIRGT--NYRSPHGIPIDLLDRM 350 (454)
T ss_pred ccceEEEeeehhhhhHHHH-------------HHHHHhhhccC--cEEEEEcCCceEEeecC--CCCCCCCCcHHHhhhh
Confidence 4899999999988644322 23334443211 0011111111 111111 1234667888999999
Q ss_pred CeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHH
Q psy2406 351 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 424 (464)
Q Consensus 351 d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE 424 (464)
- +|.-.|++++++.+||+. ++..+++ .++++|++.|.+.+.. .+-|..-.+|.
T Consensus 351 l-II~t~py~~~d~~~IL~i-----------Rc~EEdv--~m~~~A~d~Lt~i~~~-------tsLRYai~Lit 403 (454)
T KOG2680|consen 351 L-IISTQPYTEEDIKKILRI-----------RCQEEDV--EMNPDALDLLTKIGEA-------TSLRYAIHLIT 403 (454)
T ss_pred h-eeecccCcHHHHHHHHHh-----------hhhhhcc--ccCHHHHHHHHHhhhh-------hhHHHHHHHHH
Confidence 5 579999999999999952 3445555 7789999999999974 57777666554
No 217
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=5.5e-07 Score=92.31 Aligned_cols=70 Identities=16% Similarity=0.195 Sum_probs=55.5
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+-|++||+.|+++.. .+|.||+.||. ...+++||..+ .++..+.|.++||+-
T Consensus 113 ~~kV~iI~~ae~m~~~-------------AaNaLLKtLEE----------Pp~~~~fiL~~----~~~~~lLpTIrSRCq 165 (319)
T PRK08769 113 IAQVVIVDPADAINRA-------------ACNALLKTLEE----------PSPGRYLWLIS----AQPARLPATIRSRCQ 165 (319)
T ss_pred CcEEEEeccHhhhCHH-------------HHHHHHHHhhC----------CCCCCeEEEEE----CChhhCchHHHhhhe
Confidence 4569999999999754 56799999985 23455666655 467889999999996
Q ss_pred eEEEcCCCCHHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMT 369 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~ 369 (464)
. +.|.+++.++..+.+.
T Consensus 166 ~-i~~~~~~~~~~~~~L~ 182 (319)
T PRK08769 166 R-LEFKLPPAHEALAWLL 182 (319)
T ss_pred E-eeCCCcCHHHHHHHHH
Confidence 5 7999999998887774
No 218
>KOG1514|consensus
Probab=98.45 E-value=3.6e-06 Score=92.63 Aligned_cols=115 Identities=21% Similarity=0.324 Sum_probs=80.1
Q ss_pred cCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhh---
Q psy2406 271 EQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--- 347 (464)
Q Consensus 271 ~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl--- 347 (464)
.+++||+|||.|-++.+ -|+.|+.++|= .....+.+++|+-+ |..+|+..++
T Consensus 507 ~~~~VvLiDElD~Lvtr-------------~QdVlYn~fdW-------pt~~~sKLvvi~Ia-----NTmdlPEr~l~nr 561 (767)
T KOG1514|consen 507 RSTTVVLIDELDILVTR-------------SQDVLYNIFDW-------PTLKNSKLVVIAIA-----NTMDLPERLLMNR 561 (767)
T ss_pred CCCEEEEeccHHHHhcc-------------cHHHHHHHhcC-------CcCCCCceEEEEec-----ccccCHHHHhccc
Confidence 37899999999999865 34577776662 12234566666654 2334444433
Q ss_pred --ccCC-eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHH
Q psy2406 348 --GRFP-IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 424 (464)
Q Consensus 348 --~R~d-~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE 424 (464)
+|++ ..+.|.|++..+|.+|+. ..+ .|+ -.|+.+|++.+|+.-... .++||....++.
T Consensus 562 vsSRlg~tRi~F~pYth~qLq~Ii~----~RL---------~~~-~~f~~~aielvarkVAav-----SGDaRraldic~ 622 (767)
T KOG1514|consen 562 VSSRLGLTRICFQPYTHEQLQEIIS----ARL---------KGL-DAFENKAIELVARKVAAV-----SGDARRALDICR 622 (767)
T ss_pred hhhhccceeeecCCCCHHHHHHHHH----Hhh---------cch-hhcchhHHHHHHHHHHhc-----cccHHHHHHHHH
Confidence 4544 247899999999999994 222 233 467899999999987665 689999999999
Q ss_pred HHHHH
Q psy2406 425 KLLEE 429 (464)
Q Consensus 425 ~~l~~ 429 (464)
+..+-
T Consensus 623 RA~Ei 627 (767)
T KOG1514|consen 623 RAAEI 627 (767)
T ss_pred HHHHH
Confidence 87663
No 219
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=7.9e-07 Score=91.33 Aligned_cols=70 Identities=13% Similarity=0.289 Sum_probs=53.4
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+-|++||++|.+.+. .++.||+.||... .++.||.++ .++..+.|.+.+|+-
T Consensus 113 ~~kV~iiEp~~~Ld~~-------------a~naLLk~LEep~----------~~~~~Ilvt----h~~~~ll~ti~SRc~ 165 (325)
T PRK08699 113 GLRVILIHPAESMNLQ-------------AANSLLKVLEEPP----------PQVVFLLVS----HAADKVLPTIKSRCR 165 (325)
T ss_pred CceEEEEechhhCCHH-------------HHHHHHHHHHhCc----------CCCEEEEEe----CChHhChHHHHHHhh
Confidence 5679999999999754 5679999998521 234455554 356678899999995
Q ss_pred eEEEcCCCCHHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMT 369 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~ 369 (464)
. +.|.+++.+++...|.
T Consensus 166 ~-~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 166 K-MVLPAPSHEEALAYLR 182 (325)
T ss_pred h-hcCCCCCHHHHHHHHH
Confidence 4 7999999999888775
No 220
>PRK14700 recombination factor protein RarA; Provisional
Probab=98.42 E-value=1e-06 Score=89.15 Aligned_cols=113 Identities=17% Similarity=0.265 Sum_probs=84.5
Q ss_pred eeEeeccCCccccCCC-CCchhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHH
Q psy2406 325 HILFIASGAFHLAKPS-DLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEI 403 (464)
Q Consensus 325 nil~I~ag~f~~~~p~-~f~PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~ 403 (464)
.+++|+||+ +||+ .+.|+++||+- +++|++|+.+++.+++++ .+.. . ..+. ...+.++++++++|++.
T Consensus 8 ~i~LIGATT---ENP~f~vn~ALlSR~~-v~~l~~L~~~di~~il~r---al~~-~-~~~~--~~~~~i~~~al~~ia~~ 76 (300)
T PRK14700 8 KIILIGATT---ENPTYYLNDALVSRLF-ILRLKRLSLVATQKLIEK---ALSQ-D-EVLA--KHKFKIDDGLYNAMHNY 76 (300)
T ss_pred cEEEEeecC---CCccceecHhhhhhhh-eeeecCCCHHHHHHHHHH---HHHh-h-hccC--CcCCCcCHHHHHHHHHh
Confidence 457888874 7886 58999999994 589999999999999963 2322 1 1111 23578999999999999
Q ss_pred hhccccCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHhCCCCCCCCC
Q psy2406 404 AYCINERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGDLSINEDL 459 (464)
Q Consensus 404 a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~~~~~~~~d~ 459 (464)
+ +++||...+.+|..+.. .. ......||.+.|++.+++....+|=
T Consensus 77 a--------~GDaR~aLN~LE~a~~~-~~--~~~~~~it~~~~~~~~~~~~~~yDk 121 (300)
T PRK14700 77 N--------EGDCRKILNLLERMFLI-ST--RGDEIYLNKELFDQAVGETSRDFHR 121 (300)
T ss_pred c--------CCHHHHHHHHHHHHHhh-cc--ccCCCccCHHHHHHHHhHHHhcccC
Confidence 8 68999999999986531 11 1122459999999998877766663
No 221
>PF13173 AAA_14: AAA domain
Probab=98.39 E-value=5.2e-07 Score=79.65 Aligned_cols=33 Identities=24% Similarity=0.161 Sum_probs=26.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC--CCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN--APFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~--~~~i~ld~ 104 (464)
+.+++.||.|||||++++.+++.+. -.++.+++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~ 37 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINF 37 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeecc
Confidence 3489999999999999999998875 44555554
No 222
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.39 E-value=3.5e-07 Score=94.00 Aligned_cols=166 Identities=20% Similarity=0.221 Sum_probs=84.9
Q ss_pred HhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee-eeecC--ceeEeeccCCccc-----cC
Q psy2406 267 INNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKT--DHILFIASGAFHL-----AK 338 (464)
Q Consensus 267 v~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~-~~i~T--snil~I~ag~f~~-----~~ 338 (464)
+-.| ..+|++|||+||+... ....|+..||.++++... |++.+ .+.-++++++... .+
T Consensus 117 lvla-d~GiccIDe~dk~~~~-------------~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~ 182 (331)
T PF00493_consen 117 LVLA-DGGICCIDEFDKMKED-------------DRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNK 182 (331)
T ss_dssp HHHC-TTSEEEECTTTT--CH-------------HHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS
T ss_pred hhcc-cCceeeecccccccch-------------HHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhh
Confidence 3455 7899999999999753 456899999988887633 43322 2334555543221 11
Q ss_pred C----CCCchhhhccCCeEEEc-CCCCHHHHHHHHH----hhH------------------HHHHHHHHHHHhhcCceeE
Q psy2406 339 P----SDLIPELQGRFPIRVEL-DSLSISDFTRIMT----STN------------------VCLTKQYEALLATEGIKIE 391 (464)
Q Consensus 339 p----~~f~PEfl~R~d~iV~f-~~Lt~~el~~Il~----~~~------------------~~ll~~~~~ll~~~gi~L~ 391 (464)
+ -.+.++|++|||.++.+ ++.+.+.=..|.+ ... ..++++|-... ...+.-.
T Consensus 183 ~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~ya-r~~~~P~ 261 (331)
T PF00493_consen 183 SLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYA-RQNIHPV 261 (331)
T ss_dssp -CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHH-HHHC--E
T ss_pred hhHHhcccchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHH-Hhhcccc
Confidence 1 14888999999988665 5555433333332 111 11223333332 3356779
Q ss_pred eCHHHHHHHHHHhhccccC------CCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHh
Q psy2406 392 FVDDGIQRLAEIAYCINER------TENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRL 450 (464)
Q Consensus 392 ~sdeAl~~LA~~a~~~~~~------~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~ 450 (464)
++++|.+.|.+.....-.. .....+|.|..+|.-. .....+.-. -.|+.+++..+.
T Consensus 262 ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLs--eA~AKl~lr-~~V~~~Dv~~Ai 323 (331)
T PF00493_consen 262 LSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLS--EAHAKLRLR-DEVTEEDVEEAI 323 (331)
T ss_dssp E-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHH--HHHHHCTTS-SECSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHH--HHHHHHhcc-CceeHHHHHHHH
Confidence 9999999998877543110 1124566666665421 111222212 367888887653
No 223
>KOG2227|consensus
Probab=98.39 E-value=1.1e-05 Score=85.67 Aligned_cols=115 Identities=21% Similarity=0.272 Sum_probs=74.2
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCC----Cchhhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD----LIPELQ 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~----f~PEfl 347 (464)
..=|+++||+|.+..+.. +.|+.+.+= ....++++++|+-. |..| |.|-+.
T Consensus 256 ~~~llVlDEmD~L~tr~~-------------~vLy~lFew-------p~lp~sr~iLiGiA-----NslDlTdR~LprL~ 310 (529)
T KOG2227|consen 256 FMLLLVLDEMDHLITRSQ-------------TVLYTLFEW-------PKLPNSRIILIGIA-----NSLDLTDRFLPRLN 310 (529)
T ss_pred ceEEEEechhhHHhhccc-------------ceeeeehhc-------ccCCcceeeeeeeh-----hhhhHHHHHhhhhh
Confidence 345888999999985432 366666551 12345666555532 2333 333333
Q ss_pred cc---CCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHH
Q psy2406 348 GR---FPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 424 (464)
Q Consensus 348 ~R---~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE 424 (464)
.| -+..+.|.|++.+++.+|++ ..+.... ...+-+.|++..|+....+ .++.|.+..++.
T Consensus 311 ~~~~~~P~~l~F~PYTk~qI~~Il~-----------~rl~~~~-t~~~~~~Aie~~ArKvaa~-----SGDlRkaLdv~R 373 (529)
T KOG2227|consen 311 LDLTIKPKLLVFPPYTKDQIVEILQ-----------QRLSEES-TSIFLNAAIELCARKVAAP-----SGDLRKALDVCR 373 (529)
T ss_pred hccCCCCceeeecCCCHHHHHHHHH-----------HHHhccc-ccccchHHHHHHHHHhccC-----chhHHHHHHHHH
Confidence 32 24578999999999999995 2222222 2344457999999988776 789999998888
Q ss_pred HHHH
Q psy2406 425 KLLE 428 (464)
Q Consensus 425 ~~l~ 428 (464)
..++
T Consensus 374 ~aiE 377 (529)
T KOG2227|consen 374 RAIE 377 (529)
T ss_pred HHHH
Confidence 6554
No 224
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=1.7e-06 Score=88.68 Aligned_cols=70 Identities=14% Similarity=0.250 Sum_probs=57.3
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+-|++||++|+++.. .+|.||+.||. ...+++||..+ .++..+.|.++||+-
T Consensus 108 ~~kV~iI~~ae~m~~~-------------AaNaLLKtLEE----------Pp~~t~fiL~t----~~~~~lLpTI~SRCq 160 (319)
T PRK06090 108 GYRLFVIEPADAMNES-------------ASNALLKTLEE----------PAPNCLFLLVT----HNQKRLLPTIVSRCQ 160 (319)
T ss_pred CceEEEecchhhhCHH-------------HHHHHHHHhcC----------CCCCeEEEEEE----CChhhChHHHHhcce
Confidence 4679999999999854 56799999985 23456777765 478889999999995
Q ss_pred eEEEcCCCCHHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMT 369 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~ 369 (464)
.+.|.+++.+++.+.+.
T Consensus 161 -~~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 161 -QWVVTPPSTAQAMQWLK 177 (319)
T ss_pred -eEeCCCCCHHHHHHHHH
Confidence 57999999999888774
No 225
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.31 E-value=2.8e-07 Score=82.43 Aligned_cols=66 Identities=27% Similarity=0.515 Sum_probs=40.0
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccC---CCCCchhhhc
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAK---PSDLIPELQG 348 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~---p~~f~PEfl~ 348 (464)
.++.+||+|||.+.+. .|..|+..|+.. ...++-+|+++...... ...|.++|..
T Consensus 69 ~~gtL~l~~i~~L~~~-------------~Q~~L~~~l~~~---------~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~ 126 (138)
T PF14532_consen 69 KGGTLYLKNIDRLSPE-------------AQRRLLDLLKRQ---------ERSNVRLIASSSQDLEELVEEGRFSPDLYY 126 (138)
T ss_dssp TTSEEEEECGCCS-HH-------------HHHHHHHHHHHC---------TTTTSEEEEEECC-CCCHHHHSTHHHHHHH
T ss_pred CCCEEEECChHHCCHH-------------HHHHHHHHHHhc---------CCCCeEEEEEeCCCHHHHhhccchhHHHHH
Confidence 5789999999999754 677888888631 12344555554322221 2458899998
Q ss_pred cCCe-EEEcCCC
Q psy2406 349 RFPI-RVELDSL 359 (464)
Q Consensus 349 R~d~-iV~f~~L 359 (464)
|++. .|.++||
T Consensus 127 ~l~~~~i~lPpL 138 (138)
T PF14532_consen 127 RLSQLEIHLPPL 138 (138)
T ss_dssp HCSTCEEEE---
T ss_pred HhCCCEEeCCCC
Confidence 8874 3445443
No 226
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.28 E-value=5.7e-06 Score=92.00 Aligned_cols=164 Identities=18% Similarity=0.193 Sum_probs=95.2
Q ss_pred hhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeee-eeeeecCce--eEeeccCCc-----cccCC
Q psy2406 268 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGIIKTDH--ILFIASGAF-----HLAKP 339 (464)
Q Consensus 268 ~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~-~~~~i~Tsn--il~I~ag~f-----~~~~p 339 (464)
-.| .++|++|||+||+... ...+|...||-.+++. +.|+..|=| .-+++|.+- +...+
T Consensus 380 VlA-D~Gv~cIDEfdKm~~~-------------dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~ 445 (682)
T COG1241 380 VLA-DGGVCCIDEFDKMNEE-------------DRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKT 445 (682)
T ss_pred EEe-cCCEEEEEeccCCChH-------------HHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCC
Confidence 445 7899999999999643 4458999999888875 345444433 245555432 11111
Q ss_pred ----CCCchhhhccCCeEEEcCC-CCHHHHHHHHHhhHH------------------------HHHHHHHHHHhhcCcee
Q psy2406 340 ----SDLIPELQGRFPIRVELDS-LSISDFTRIMTSTNV------------------------CLTKQYEALLATEGIKI 390 (464)
Q Consensus 340 ----~~f~PEfl~R~d~iV~f~~-Lt~~el~~Il~~~~~------------------------~ll~~~~~ll~~~gi~L 390 (464)
-+|+|+|++|||.++.+.. ++++.-..|.+...+ .++++|-.. +...+.-
T Consensus 446 ~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~Y-AR~~v~P 524 (682)
T COG1241 446 VAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISY-ARKNVTP 524 (682)
T ss_pred HHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHH-HhccCCc
Confidence 1588999999999876644 333333333322111 124444443 3344667
Q ss_pred EeCHHHHHHHHHHhhccccCC---------CccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHh
Q psy2406 391 EFVDDGIQRLAEIAYCINERT---------ENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRL 450 (464)
Q Consensus 391 ~~sdeAl~~LA~~a~~~~~~~---------~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~ 450 (464)
.++++|.+.|.+...+. ++. --.=+|.|.++|.-. ++ ...+.-. -.|+.++++.+.
T Consensus 525 ~lt~ea~e~l~~~Yv~~-Rk~~~~~~~~~~~piT~RqLEsiiRLa-eA-~Ak~rLS-~~V~~eD~~eAi 589 (682)
T COG1241 525 VLTEEAREELEDYYVEM-RKKSALVEEKRTIPITARQLESIIRLA-EA-HAKMRLS-DVVEEEDVDEAI 589 (682)
T ss_pred ccCHHHHHHHHHHHHHh-hhccccccccCcccccHHHHHHHHHHH-HH-HHhhhcc-CCCCHHHHHHHH
Confidence 99999999999887654 110 012367777776522 21 1111111 246777766553
No 227
>KOG0990|consensus
Probab=98.25 E-value=4.9e-06 Score=84.63 Aligned_cols=110 Identities=22% Similarity=0.307 Sum_probs=79.0
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+..|++||-|....+ -|++|-.+.+..+.+ .-|+.-+ +-+....|+.++||.
T Consensus 131 ~fKlvILDEADaMT~~-------------AQnALRRviek~t~n----------~rF~ii~----n~~~ki~pa~qsRct 183 (360)
T KOG0990|consen 131 AFKLVILDEADAMTRD-------------AQNALRRVIEKYTAN----------TRFATIS----NPPQKIHPAQQSRCT 183 (360)
T ss_pred ceeEEEecchhHhhHH-------------HHHHHHHHHHHhccc----------eEEEEec----cChhhcCchhhcccc
Confidence 5779999999998765 567888777764443 3332111 345678999999997
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 430 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~ 430 (464)
. +.|.|++..+...++.. .+..+ .+..+++....++... .++.|...+.|+......
T Consensus 184 r-frf~pl~~~~~~~r~sh-----------i~e~e--~~~~~~~~~~a~~r~s--------~gDmr~a~n~Lqs~~~~~ 240 (360)
T KOG0990|consen 184 R-FRFAPLTMAQQTERQSH-----------IRESE--QKETNPEGYSALGRLS--------VGDMRVALNYLQSILKKV 240 (360)
T ss_pred c-CCCCCCChhhhhhHHHH-----------HHhcc--hhhcCHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHh
Confidence 6 69999999888877742 12222 3477888888888777 578899999998766543
No 228
>KOG0741|consensus
Probab=98.22 E-value=5.7e-06 Score=88.71 Aligned_cols=34 Identities=29% Similarity=0.418 Sum_probs=31.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEAT 105 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s 105 (464)
.++||.||||+|||.||-.+|...+.||+.+-.+
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSp 572 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISP 572 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeCh
Confidence 5799999999999999999999999999998543
No 229
>KOG2035|consensus
Probab=98.20 E-value=1.9e-05 Score=79.28 Aligned_cols=92 Identities=20% Similarity=0.341 Sum_probs=65.4
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
++-||+|-|.|++.++ -|.+|-.-||- ..+|+-+|... +..+.++|+..+|+
T Consensus 127 ~fKvvvi~ead~LT~d-------------AQ~aLRRTMEk----------Ys~~~RlIl~c----ns~SriIepIrSRC- 178 (351)
T KOG2035|consen 127 PFKVVVINEADELTRD-------------AQHALRRTMEK----------YSSNCRLILVC----NSTSRIIEPIRSRC- 178 (351)
T ss_pred ceEEEEEechHhhhHH-------------HHHHHHHHHHH----------HhcCceEEEEe----cCcccchhHHhhhe-
Confidence 7889999999999865 45567666663 12233333222 23456899999999
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 404 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a 404 (464)
..|..+.++++|+..++. ..+..+|+ .+..+.+..||+.+
T Consensus 179 l~iRvpaps~eeI~~vl~-----------~v~~kE~l--~lp~~~l~rIa~kS 218 (351)
T KOG2035|consen 179 LFIRVPAPSDEEITSVLS-----------KVLKKEGL--QLPKELLKRIAEKS 218 (351)
T ss_pred eEEeCCCCCHHHHHHHHH-----------HHHHHhcc--cCcHHHHHHHHHHh
Confidence 457999999999999984 22344555 56689999999887
No 230
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.18 E-value=1e-05 Score=70.29 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=34.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHh--------CCCeEEeecCceeeccccccChHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS--------NAPFIKIEATKFTEVGYVGRDVDTIIRDLIDI 127 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l--------~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~ 127 (464)
+.++++||||+|||++++.+++.+ ..+++.++++... ....+.+.+.+.
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~ 61 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR-------TPRDFAQEILEA 61 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS-------SHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC-------CHHHHHHHHHHH
Confidence 569999999999999999999988 6777777765432 345555555444
No 231
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.18 E-value=3.2e-06 Score=79.54 Aligned_cols=104 Identities=22% Similarity=0.391 Sum_probs=50.5
Q ss_pred CCcEEEEecccccc-CcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCcc-c-cCCCCCchhhhc
Q psy2406 272 QNGIIFLDEIDKIT-TRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFH-L-AKPSDLIPELQG 348 (464)
Q Consensus 272 ~~sVIfIDEIDK~~-~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~-~-~~p~~f~PEfl~ 348 (464)
...||+|||++.+. .... .......|..+++.. ....++.+|++++.. . ..-..-.+++.+
T Consensus 118 ~~~iiviDe~~~~~~~~~~--------~~~~~~~l~~~~~~~--------~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~ 181 (234)
T PF01637_consen 118 KKVIIVIDEFQYLAIASEE--------DKDFLKSLRSLLDSL--------LSQQNVSIVITGSSDSLMEEFLDDKSPLFG 181 (234)
T ss_dssp CCEEEEEETGGGGGBCTTT--------THHHHHHHHHHHHH------------TTEEEEEEESSHHHHHHTT-TTSTTTT
T ss_pred CcEEEEEecHHHHhhcccc--------hHHHHHHHHHHHhhc--------cccCCceEEEECCchHHHHHhhcccCcccc
Confidence 44899999999998 2211 112334555555431 112344444443211 1 011223456889
Q ss_pred cCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHh
Q psy2406 349 RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 404 (464)
Q Consensus 349 R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a 404 (464)
|+.. +.+++++.++..+++.. .+... +++.++++.++.+....
T Consensus 182 ~~~~-~~l~~l~~~e~~~~~~~-----------~~~~~-~~~~~~~~~~~~i~~~~ 224 (234)
T PF01637_consen 182 RFSH-IELKPLSKEEAREFLKE-----------LFKEL-IKLPFSDEDIEEIYSLT 224 (234)
T ss_dssp ---E-EEE----HHHHHHHHHH-----------HHHCC-------HHHHHHHHHHH
T ss_pred ccce-EEEeeCCHHHHHHHHHH-----------HHHHh-hcccCCHHHHHHHHHHh
Confidence 9998 89999999999988842 22222 33356899998887665
No 232
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.15 E-value=1.9e-06 Score=74.20 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=29.3
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
|++.|||||||||+|+.||+.+|++++.+|.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999999988876
No 233
>KOG0478|consensus
Probab=98.12 E-value=1.2e-05 Score=88.23 Aligned_cols=121 Identities=25% Similarity=0.300 Sum_probs=75.5
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeee-eeeeecCcee--EeeccCCcc--ccCC-------
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGIIKTDHI--LFIASGAFH--LAKP------- 339 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~-~~~~i~Tsni--l~I~ag~f~--~~~p------- 339 (464)
..+|-+|||+||+..+ .+..|+++||-.+++. +.|+|.+=|. -++++.+-. .-+|
T Consensus 526 D~GiCCIDEFDKM~dS-------------trSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eN 592 (804)
T KOG0478|consen 526 DNGICCIDEFDKMSDS-------------TRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIEN 592 (804)
T ss_pred CCceEEchhhhhhhHH-------------HHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhc
Confidence 7899999999999643 3458999999888876 4477665444 344443311 1112
Q ss_pred CCCchhhhccCCeEEE-cCCCCHHHHHHHHHhhH-----------------HHHHHHHHHHHhhcCceeEeCHHHHHHHH
Q psy2406 340 SDLIPELQGRFPIRVE-LDSLSISDFTRIMTSTN-----------------VCLTKQYEALLATEGIKIEFVDDGIQRLA 401 (464)
Q Consensus 340 ~~f~PEfl~R~d~iV~-f~~Lt~~el~~Il~~~~-----------------~~ll~~~~~ll~~~gi~L~~sdeAl~~LA 401 (464)
-+++|.||+|||.++- |.+.++..=.++.. +. ..+++.|.. .+.+.+.-.++++|...+.
T Consensus 593 I~LpptLLSRFDLIylllD~~DE~~Dr~La~-HivsLy~e~~~~~~~~~~d~~~lr~yi~-yArk~i~p~l~~ea~~~l~ 670 (804)
T KOG0478|consen 593 INLPPTLLSRFDLIFLLLDKPDERSDRRLAD-HIVALYPETGEKQGSEAIDMNLLRDYIR-YARKNIHPALSPEASQALI 670 (804)
T ss_pred cCCChhhhhhhcEEEEEecCcchhHHHHHHH-HHHHhcccccccchhHHHhHHHHHHHHH-HHhccCCccccHHHHHHHH
Confidence 1589999999998754 45555441122211 11 112333333 2456677788999999998
Q ss_pred HHhhcc
Q psy2406 402 EIAYCI 407 (464)
Q Consensus 402 ~~a~~~ 407 (464)
..+.+.
T Consensus 671 ~ayvd~ 676 (804)
T KOG0478|consen 671 QAYVDM 676 (804)
T ss_pred HHhhhh
Confidence 877664
No 234
>PRK08118 topology modulation protein; Reviewed
Probab=98.11 E-value=3.6e-06 Score=78.25 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=36.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRD 116 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d 116 (464)
+.|+++|||||||||||+.||+.++.|++.+|.-.+ ..||...+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~-~~~w~~~~ 45 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW-KPNWEGVP 45 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc-ccCCcCCC
Confidence 359999999999999999999999999999997543 45565444
No 235
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.05 E-value=4.1e-06 Score=76.13 Aligned_cols=34 Identities=29% Similarity=0.316 Sum_probs=30.5
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
.|..|+|+||||||||++|+.||+.+|.+|+..|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 3467999999999999999999999999998655
No 236
>PRK13947 shikimate kinase; Provisional
Probab=98.04 E-value=1.1e-05 Score=73.87 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=30.3
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
+|+++||||||||++|+.||+.+|++|+..|.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 69999999999999999999999999998875
No 237
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.7e-05 Score=83.81 Aligned_cols=82 Identities=27% Similarity=0.482 Sum_probs=58.4
Q ss_pred CcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhh--ccC
Q psy2406 273 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRF 350 (464)
Q Consensus 273 ~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl--~R~ 350 (464)
++|+|+||+|.+.+.+.. ........+...|+..+++.. ... ++++..+ +.+..+.|.+. +|+
T Consensus 77 ~~ii~~d~~~~~~~~~~~--~~~~~~~~v~~~l~~~~d~~~--------~~~-v~~~~~~----~~~~~~~~a~~~~~~~ 141 (494)
T COG0464 77 PSIIFIDEIDALAPKRSS--DQGEVERRVVAQLLALMDGLK--------RGQ-VIVIGAT----NRPDGLDPAKRRPGRF 141 (494)
T ss_pred CCeEeechhhhcccCccc--cccchhhHHHHHHHHhccccc--------CCc-eEEEeec----CCccccChhHhCcccc
Confidence 599999999999988765 223334457778999998753 222 4555433 45666666654 999
Q ss_pred CeEEEcCCCCHHHHHHHHH
Q psy2406 351 PIRVELDSLSISDFTRIMT 369 (464)
Q Consensus 351 d~iV~f~~Lt~~el~~Il~ 369 (464)
+..+.+...+.....+|+.
T Consensus 142 ~~~~~~~~~~~~~~~ei~~ 160 (494)
T COG0464 142 DREIEVNLPDEAGRLEILQ 160 (494)
T ss_pred ceeeecCCCCHHHHHHHHH
Confidence 9999999999887777764
No 238
>PRK12377 putative replication protein; Provisional
Probab=98.04 E-value=1e-05 Score=80.19 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=22.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.+++|+||||||||+||.++|+.+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l 125 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999987
No 239
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.03 E-value=8.4e-06 Score=76.62 Aligned_cols=55 Identities=27% Similarity=0.414 Sum_probs=42.9
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISI 129 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~ 129 (464)
++|.|+|++|+||||++|.||+.++.+|+.+|.- .+. ..|.++..|+...=+..|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~--Ie~-~~g~sI~eIF~~~GE~~F 57 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQE--IEK-RTGMSIAEIFEEEGEEGF 57 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHH--HHH-HHCcCHHHHHHHHhHHHH
Confidence 5699999999999999999999999999988862 221 346666666666555554
No 240
>PRK07261 topology modulation protein; Provisional
Probab=98.02 E-value=8.8e-06 Score=75.83 Aligned_cols=45 Identities=27% Similarity=0.460 Sum_probs=37.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChH
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVD 118 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~ 118 (464)
.|+++||||+||||||+.|++.++.|++.+|.-.+ ..+|...+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~-~~~~~~~~~~ 46 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF-QPNWQERDDD 46 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe-ccccccCCHH
Confidence 48999999999999999999999999999997654 4556655533
No 241
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.02 E-value=0.00013 Score=74.18 Aligned_cols=142 Identities=16% Similarity=0.185 Sum_probs=76.4
Q ss_pred hhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhcccc--CceeeeeeeeecCceeEeeccCCccccCCCCCchh
Q psy2406 268 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVE--GTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPE 345 (464)
Q Consensus 268 ~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLE--G~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PE 345 (464)
+.. ..-++.|||||.+...... .|..+|.+|- |... ++-+||.|+...-+.-.-+|.
T Consensus 142 r~~-~vrmLIIDE~H~lLaGs~~----------~qr~~Ln~LK~L~NeL----------~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 142 RRL-GVRMLIIDEFHNLLAGSYR----------KQREFLNALKFLGNEL----------QIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred HHc-CCcEEEeechHHHhcccHH----------HHHHHHHHHHHHhhcc----------CCCeEEeccHHHHHHhccCHH
Confidence 444 6679999999997543221 2334444432 2211 223445553221122234689
Q ss_pred hhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHH
Q psy2406 346 LQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEK 425 (464)
Q Consensus 346 fl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~ 425 (464)
+-|||+. +.+++...++=. ..++..+.+.+-.+.-.---+++...+|-..+.. ..| .+.+++..
T Consensus 201 La~RF~~-~~Lp~W~~d~ef-------~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G------~iG--~l~~ll~~ 264 (302)
T PF05621_consen 201 LASRFEP-FELPRWELDEEF-------RRLLASFERALPLRKPSNLASPELARRIHERSEG------LIG--ELSRLLNA 264 (302)
T ss_pred HHhccCC-ccCCCCCCCcHH-------HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCC------chH--HHHHHHHH
Confidence 9999986 578877754422 2345555665543332222245555677666643 344 46666665
Q ss_pred HHHHHhcccCCCceeecHHHHHhH
Q psy2406 426 LLEEVSFNSNNISLLVDADYVNSR 449 (464)
Q Consensus 426 ~l~~~l~~~~~~~v~I~~e~v~~~ 449 (464)
.-... +.++.-.||.+.+++.
T Consensus 265 aA~~A---I~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 265 AAIAA---IRSGEERITREILDKI 285 (302)
T ss_pred HHHHH---HhcCCceecHHHHhhC
Confidence 43332 3334457898888763
No 242
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.98 E-value=4.2e-05 Score=76.78 Aligned_cols=143 Identities=13% Similarity=0.159 Sum_probs=74.4
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeee-e-eeecCceeEeeccCCccccCCCCCchhhhcc
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK-Y-GIIKTDHILFIASGAFHLAKPSDLIPELQGR 349 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~-~-~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R 349 (464)
...|+|||++.-..++..+ .+ .....|-|++|.+..-.+ . ....-.++.++|+.+-... ...++|-|++.
T Consensus 100 k~lv~fiDDlN~p~~d~yg---tq----~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~G-r~~is~R~~r~ 171 (272)
T PF12775_consen 100 KKLVLFIDDLNMPQPDKYG---TQ----PPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGG-RNPISPRFLRH 171 (272)
T ss_dssp SEEEEEEETTT-S---TTS---------HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT---SHHHHHHTT
T ss_pred cEEEEEecccCCCCCCCCC---Cc----CHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCC-CCCCChHHhhh
Confidence 4569999999977665443 11 133466677774433221 1 2334456677777542221 23588899999
Q ss_pred CCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCcee---EeCHHHHHHH------HHHhhc--cccCCCccChhH
Q psy2406 350 FPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKI---EFVDDGIQRL------AEIAYC--INERTENIGARR 418 (464)
Q Consensus 350 ~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L---~~sdeAl~~L------A~~a~~--~~~~~~~~GAR~ 418 (464)
|. ++.+.+++.+.+..|.. .++.. .+...+..- .+.+...... ++..+. |...+..+.-|.
T Consensus 172 f~-i~~~~~p~~~sl~~If~----~il~~---~l~~~~f~~~v~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~FnlRD 243 (272)
T PF12775_consen 172 FN-ILNIPYPSDESLNTIFS----SILQS---HLKNGGFPEDVQKLADKLVQATIELYQKIRQQFLPTPSKPHYTFNLRD 243 (272)
T ss_dssp EE-EEE----TCCHHHHHHH----HHHHH---HTCHTTSSGGGCCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTTSHHHH
T ss_pred eE-EEEecCCChHHHHHHHH----HHHhh---hcccCCCChHHHHHHHHHHHHHHHHHHhhhcccCCCCccceeeccHHH
Confidence 96 57999999999999985 33332 222122211 1112211111 112232 234577888899
Q ss_pred HHHHHHHHHHHH
Q psy2406 419 LYTAMEKLLEEV 430 (464)
Q Consensus 419 L~r~IE~~l~~~ 430 (464)
|.++++.++...
T Consensus 244 lsrv~qGil~~~ 255 (272)
T PF12775_consen 244 LSRVFQGILLAS 255 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999998887543
No 243
>PRK00625 shikimate kinase; Provisional
Probab=97.97 E-value=1.3e-05 Score=75.29 Aligned_cols=32 Identities=31% Similarity=0.493 Sum_probs=30.2
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
+|+|+|+||||||++++.||+.++.+|+.+|.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~ 33 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD 33 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhH
Confidence 59999999999999999999999999998874
No 244
>PRK08181 transposase; Validated
Probab=97.97 E-value=1.8e-05 Score=79.42 Aligned_cols=24 Identities=13% Similarity=0.045 Sum_probs=22.3
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.+++|+||||||||.||.++|..+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a 130 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL 130 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH
Confidence 679999999999999999999765
No 245
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.96 E-value=8.5e-05 Score=80.94 Aligned_cols=122 Identities=12% Similarity=0.194 Sum_probs=67.5
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccC--CccccCC---------C
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASG--AFHLAKP---------S 340 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag--~f~~~~p---------~ 340 (464)
...||||+|+--.... +. ...+..|.+.+...... -++||.+- .....+. .
T Consensus 132 ~~kvILVEDlPN~~~~-------~~--~~f~~~L~~~l~~~~~~---------PlV~iiSe~~~~~~~~~~~~~~~t~~~ 193 (519)
T PF03215_consen 132 NKKVILVEDLPNVFHR-------DT--SRFREALRQYLRSSRCL---------PLVFIISETESLSGDNSYRSNSFTAER 193 (519)
T ss_pred CceEEEeeccccccch-------hH--HHHHHHHHHHHHcCCCC---------CEEEEEecccccCCCCcccccchhhhh
Confidence 4679999999855422 22 45777788777632210 23444441 1111111 1
Q ss_pred CCchhhhc--cCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEe-CHHHHHHHHHHhhccccCCCccChh
Q psy2406 341 DLIPELQG--RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEF-VDDGIQRLAEIAYCINERTENIGAR 417 (464)
Q Consensus 341 ~f~PEfl~--R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~-sdeAl~~LA~~a~~~~~~~~~~GAR 417 (464)
-|.+++++ ++. +|.|+|.+..-+.+.|+ .+..+..+.. .+....- ..++++.|++.+ +++-|
T Consensus 194 L~~~~il~~~~i~-~I~FNpIa~T~mkKaL~----rI~~~E~~~~--~~~~~~p~~~~~l~~I~~~s--------~GDIR 258 (519)
T PF03215_consen 194 LFPKEILNHPGIT-RIKFNPIAPTFMKKALK----RILKKEARSS--SGKNKVPDKQSVLDSIAESS--------NGDIR 258 (519)
T ss_pred ccCHHHHhCCCce-EEEecCCCHHHHHHHHH----HHHHHHhhhh--cCCccCCChHHHHHHHHHhc--------CchHH
Confidence 26778875 454 47999999998888885 2333221111 1222222 245689998776 46666
Q ss_pred HHHHHHHHH
Q psy2406 418 RLYTAMEKL 426 (464)
Q Consensus 418 ~L~r~IE~~ 426 (464)
..-+.+|=.
T Consensus 259 sAIn~LQf~ 267 (519)
T PF03215_consen 259 SAINNLQFW 267 (519)
T ss_pred HHHHHHHHH
Confidence 666655533
No 246
>PRK06526 transposase; Provisional
Probab=97.95 E-value=4.1e-06 Score=83.22 Aligned_cols=25 Identities=24% Similarity=0.065 Sum_probs=22.9
Q ss_pred CcceEEEecCCCchHHHHHHHHHHh
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
+.+++|+||||||||+||.+|+..+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 4689999999999999999999775
No 247
>PRK13948 shikimate kinase; Provisional
Probab=97.95 E-value=1.7e-05 Score=75.10 Aligned_cols=55 Identities=20% Similarity=0.326 Sum_probs=40.7
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHH
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDI 127 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~ 127 (464)
.|.+|+|+|++|||||++++.||+.+|.+|+..|. +.+ ...|.+...++...-..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~--~ie-~~~g~si~~if~~~Ge~ 63 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDR--YIE-RVTGKSIPEIFRHLGEA 63 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCH--HHH-HHHhCCHHHHHHHhCHH
Confidence 45789999999999999999999999999998874 222 12355555555544333
No 248
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.93 E-value=1.2e-05 Score=72.02 Aligned_cols=61 Identities=13% Similarity=-0.011 Sum_probs=49.8
Q ss_pred CchhHhhhhhhcchhHHHHhhhhhcccccccCCCCCCccccccCCCcceEEEecCCCchHHHHHHHHHHh
Q psy2406 26 PSANNLRNKFGIRKAILKASVYIDAPNTRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 26 ~~~~~~l~~~~igq~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
-.++..|...+.||..++..|..++..--++. ++. .|--+.|+||||||||.+++.||+.+
T Consensus 17 ~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~-~p~--------KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 17 TGLEKDLQRNLFGQHLAVEVVVNAIKGHLANP-NPR--------KPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHcCC-CCC--------CCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 35788899999999999999999887765442 222 34458899999999999999999986
No 249
>PRK13949 shikimate kinase; Provisional
Probab=97.92 E-value=1.4e-05 Score=74.35 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=30.1
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
+|+|+||||+|||++++.||+.++++|+.+|.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~ 34 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDF 34 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccH
Confidence 59999999999999999999999999998874
No 250
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=9e-05 Score=75.47 Aligned_cols=70 Identities=14% Similarity=0.288 Sum_probs=55.0
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
++-|++||++|++... .++.||+.||. ...+++||..+ +++..+.|.+.+|+-
T Consensus 90 ~~KvvII~~~e~m~~~-------------a~NaLLK~LEE----------Pp~~t~~il~~----~~~~kll~TI~SRc~ 142 (299)
T PRK07132 90 QKKILIIKNIEKTSNS-------------LLNALLKTIEE----------PPKDTYFLLTT----KNINKVLPTIVSRCQ 142 (299)
T ss_pred CceEEEEecccccCHH-------------HHHHHHHHhhC----------CCCCeEEEEEe----CChHhChHHHHhCeE
Confidence 5679999999998643 56799999985 23455666654 366789999999995
Q ss_pred eEEEcCCCCHHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMT 369 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~ 369 (464)
++.|.+++.+++.+.+.
T Consensus 143 -~~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 143 -VFNVKEPDQQKILAKLL 159 (299)
T ss_pred -EEECCCCCHHHHHHHHH
Confidence 58999999999988775
No 251
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=5.7e-05 Score=76.58 Aligned_cols=61 Identities=23% Similarity=0.361 Sum_probs=48.3
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
++-|++||+.|+++.. .++.||+.||. ...+++||..+ .++..+.|..+||+-
T Consensus 95 ~~kv~ii~~ad~mt~~-------------AaNaLLK~LEE----------Pp~~~~fiL~~----~~~~~ll~TI~SRcq 147 (290)
T PRK05917 95 PYKIYIIHEADRMTLD-------------AISAFLKVLED----------PPQHGVIILTS----AKPQRLPPTIRSRSL 147 (290)
T ss_pred CceEEEEechhhcCHH-------------HHHHHHHHhhc----------CCCCeEEEEEe----CChhhCcHHHHhcce
Confidence 5679999999999865 56799999985 34466777665 477889999999995
Q ss_pred eEEEcCCCC
Q psy2406 352 IRVELDSLS 360 (464)
Q Consensus 352 ~iV~f~~Lt 360 (464)
.+.|+++.
T Consensus 148 -~~~~~~~~ 155 (290)
T PRK05917 148 -SIHIPMEE 155 (290)
T ss_pred -EEEccchh
Confidence 47898764
No 252
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=4.7e-05 Score=77.19 Aligned_cols=69 Identities=12% Similarity=0.312 Sum_probs=53.2
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
++.|++||+.|+++.. .+|.||+.||. ...+++||..+ .++..+.|.++||+-
T Consensus 104 ~~kV~II~~ad~m~~~-------------AaNaLLKtLEE----------Pp~~t~~iL~t----~~~~~lLpTI~SRcq 156 (290)
T PRK07276 104 KQQVFIIKDADKMHVN-------------AANSLLKVIEE----------PQSEIYIFLLT----NDENKVLPTIKSRTQ 156 (290)
T ss_pred CcEEEEeehhhhcCHH-------------HHHHHHHHhcC----------CCCCeEEEEEE----CChhhCchHHHHcce
Confidence 5679999999999854 56799999985 23455666665 468889999999995
Q ss_pred eEEEcCCCCHHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMT 369 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~ 369 (464)
+|.|.+ +.+++.+++.
T Consensus 157 -~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 157 -IFHFPK-NEAYLIQLLE 172 (290)
T ss_pred -eeeCCC-cHHHHHHHHH
Confidence 579977 7777777663
No 253
>PRK03839 putative kinase; Provisional
Probab=97.89 E-value=9.5e-06 Score=75.36 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=29.0
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
.|+|+|+|||||||+|+.||+.++.+|+.+|
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999998776
No 254
>PRK08116 hypothetical protein; Validated
Probab=97.88 E-value=1.8e-05 Score=79.22 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=27.5
Q ss_pred cceEEEecCCCchHHHHHHHHHHh---CCCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~ 104 (464)
.+++|+||||||||+||.++|+.+ +.+++.++.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~ 150 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNF 150 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 459999999999999999999986 566665554
No 255
>KOG0480|consensus
Probab=97.86 E-value=4.3e-05 Score=83.57 Aligned_cols=161 Identities=19% Similarity=0.188 Sum_probs=92.5
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeee-eeeeecCcee--EeeccCCccc---cC------C
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGIIKTDHI--LFIASGAFHL---AK------P 339 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~-~~~~i~Tsni--l~I~ag~f~~---~~------p 339 (464)
.++|-.|||+||+.-+ -|.+++..||..+++. +.|++-|=|. -+|+|++.-. ++ .
T Consensus 442 DnGICCIDEFDKMd~~-------------dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eN 508 (764)
T KOG0480|consen 442 DNGICCIDEFDKMDVK-------------DQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLREN 508 (764)
T ss_pred cCceEEechhcccChH-------------hHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhh
Confidence 7899999999999743 3669999999888875 4455544333 3455543111 11 1
Q ss_pred CCCchhhhccCCeEEEc-CCCCHHHHHHHH----HhhH-------------HHHHHHHHHHHhhcCceeEeCHHHHHHHH
Q psy2406 340 SDLIPELQGRFPIRVEL-DSLSISDFTRIM----TSTN-------------VCLTKQYEALLATEGIKIEFVDDGIQRLA 401 (464)
Q Consensus 340 ~~f~PEfl~R~d~iV~f-~~Lt~~el~~Il----~~~~-------------~~ll~~~~~ll~~~gi~L~~sdeAl~~LA 401 (464)
-.+.+++++|||.++.+ ..+++..=..|. ..+. ...+++|-... +.+.-.++.+|-+.|.
T Consensus 509 i~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yA--R~~~P~ls~ea~~~lv 586 (764)
T KOG0480|consen 509 INMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYA--RNFKPKLSKEASEMLV 586 (764)
T ss_pred cCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHH--HhcCccccHHHHHHHH
Confidence 14889999999987554 444443333322 2110 01122232322 2667788888888888
Q ss_pred HHhhc--------cccCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHh
Q psy2406 402 EIAYC--------INERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRL 450 (464)
Q Consensus 402 ~~a~~--------~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~ 450 (464)
+..-. .|.++..+-+|.|...|. |...+..+.-. -.||+++++.+.
T Consensus 587 e~Y~~lR~~~~~~~~~~s~~ITvRqLESlIR--LsEA~Ar~~~~-devt~~~v~ea~ 640 (764)
T KOG0480|consen 587 EKYKGLRQRDAQGNNRSSYRITVRQLESLIR--LSEARARVECR-DEVTKEDVEEAV 640 (764)
T ss_pred HHHHHHHHhhccccCcccccccHHHHHHHHH--HHHHHHhhhhh-hhccHHHHHHHH
Confidence 76522 112233456787777764 22222222212 367888887753
No 256
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.86 E-value=3.1e-05 Score=76.68 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=26.5
Q ss_pred cceEEEecCCCchHHHHHHHHHHh---CCCeEEee
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIE 103 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld 103 (464)
.+++|+||||||||+||.++|+.+ |.+++.++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 479999999999999999999987 55555443
No 257
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.85 E-value=1.4e-05 Score=71.46 Aligned_cols=31 Identities=32% Similarity=0.584 Sum_probs=28.8
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
+|+|+||||||||++|+.||+.+|.+++..|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999998766
No 258
>PRK06217 hypothetical protein; Validated
Probab=97.85 E-value=2.9e-05 Score=72.70 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=32.2
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCce
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKF 107 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~ 107 (464)
..|++.|+|||||||+|++||+.+|+|++.+|.-.+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~ 37 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFW 37 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceee
Confidence 359999999999999999999999999999986444
No 259
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.84 E-value=0.0042 Score=66.10 Aligned_cols=145 Identities=12% Similarity=0.226 Sum_probs=87.7
Q ss_pred Hhhcc-CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccc--cCC----
Q psy2406 267 INNVE-QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL--AKP---- 339 (464)
Q Consensus 267 v~~a~-~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~--~~p---- 339 (464)
++.+. +.=||+|||++-+.+-+ .+.+++..-+.|++++|.... -...++.++++|+... ..+
T Consensus 233 lr~aGy~GLlI~lDE~e~l~kl~-----~~~~R~~~ye~lr~lidd~~~------G~~~gL~~~~~gTPef~eD~rrGv~ 301 (416)
T PF10923_consen 233 LRDAGYKGLLILLDELENLYKLR-----NDQAREKNYEALRQLIDDIDQ------GRAPGLYFVFAGTPEFFEDGRRGVY 301 (416)
T ss_pred HHHcCCCceEEEEechHHHHhcC-----ChHHHHHHHHHHHHHHHHHhc------CCCCceEEEEeeCHHHhhCcccccc
Confidence 34442 23389999999886432 244466667789998873110 0134566666654211 100
Q ss_pred ----------CC--CchhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhcc
Q psy2406 340 ----------SD--LIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 407 (464)
Q Consensus 340 ----------~~--f~PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~ 407 (464)
.. -.+.|.+-...+|.+.||+.+++..++.+ +..-+. ...+....++++.+..+++.++.
T Consensus 302 sY~AL~~RL~~~~~~~~~~~n~~~pvIrL~~l~~eel~~l~~k----lr~i~a---~~~~~~~~v~d~~l~~~~~~~~~- 373 (416)
T PF10923_consen 302 SYEALAQRLAEEFFADDGFDNLRAPVIRLQPLTPEELLELLEK----LRDIYA---EAYGYESRVDDEELKAFAQHVAG- 373 (416)
T ss_pred ccHHHHHHHhccccccccccCccCceecCCCCCHHHHHHHHHH----HHHHHH---hhCCCCCCCCHHHHHHHHHHHHh-
Confidence 01 24667777777899999999999987742 222222 23556689999999999999987
Q ss_pred ccCCCccChhHH---HHHHHHHH--HHHhcccC
Q psy2406 408 NERTENIGARRL---YTAMEKLL--EEVSFNSN 435 (464)
Q Consensus 408 ~~~~~~~GAR~L---~r~IE~~l--~~~l~~~~ 435 (464)
..|+..- |.+|.+.+ .+.+.+.|
T Consensus 374 -----r~G~~~~~tPR~~ik~fv~~Ld~~~q~p 401 (416)
T PF10923_consen 374 -----RLGGDVFVTPREFIKDFVDVLDILEQNP 401 (416)
T ss_pred -----ccCcccccCHHHHHHHHHHHHHHHHHCC
Confidence 4666422 44444433 23344444
No 260
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.80 E-value=1.3e-05 Score=70.84 Aligned_cols=30 Identities=30% Similarity=0.306 Sum_probs=25.6
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
|+++|||||||||+|+.+++.++..++..|
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~~D 31 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVISQD 31 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEeHH
Confidence 789999999999999999999985555433
No 261
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.80 E-value=0.00018 Score=72.92 Aligned_cols=37 Identities=19% Similarity=0.360 Sum_probs=32.0
Q ss_pred cceEEEecCCCchHHHHHHHHHH------hCCCeEEeecCcee
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL------SNAPFIKIEATKFT 108 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~------l~~~~i~ld~s~~~ 108 (464)
..|||.||+|.|||.|||.+-.. +..+|+.++|..+.
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlr 251 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLR 251 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeec
Confidence 34999999999999999998743 57899999998874
No 262
>PRK14532 adenylate kinase; Provisional
Probab=97.78 E-value=1.9e-05 Score=73.75 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=27.0
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
+|+++|||||||||+|+.||+.+|++++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 589999999999999999999999877644
No 263
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.78 E-value=0.00049 Score=67.65 Aligned_cols=37 Identities=19% Similarity=0.133 Sum_probs=31.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCcee
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFT 108 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~ 108 (464)
.+-.+.||+|||||+..|.||+.+|.+++.++|++-.
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~ 69 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM 69 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc
Confidence 3467899999999999999999999999999998754
No 264
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=6.1e-05 Score=75.18 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=50.2
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+-|++||++|+++.. ..+.||+.||. ...+++||..+ .++..+.|..+||+-
T Consensus 88 ~~KV~II~~ae~m~~~-------------AaNaLLK~LEE----------Pp~~t~fiLit----~~~~~lLpTI~SRCq 140 (261)
T PRK05818 88 GKKIYIIYGIEKLNKQ-------------SANSLLKLIEE----------PPKNTYGIFTT----RNENNILNTILSRCV 140 (261)
T ss_pred CCEEEEeccHhhhCHH-------------HHHHHHHhhcC----------CCCCeEEEEEE----CChHhCchHhhhhee
Confidence 5779999999999865 55699999986 34566777765 478889999999995
Q ss_pred eEEEcCCCCHHHH
Q psy2406 352 IRVELDSLSISDF 364 (464)
Q Consensus 352 ~iV~f~~Lt~~el 364 (464)
++.|.++.....
T Consensus 141 -~~~~~~~~~~~~ 152 (261)
T PRK05818 141 -QYVVLSKEKKVP 152 (261)
T ss_pred -eeecCChhhhcc
Confidence 468888844433
No 265
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.74 E-value=0.00037 Score=72.26 Aligned_cols=129 Identities=22% Similarity=0.337 Sum_probs=75.6
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeee--eecCceeEeeccCCccc---cCCCCCchhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG--IIKTDHILFIASGAFHL---AKPSDLIPEL 346 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~--~i~Tsnil~I~ag~f~~---~~p~~f~PEf 346 (464)
..+-||+|||--+.+. .|.-||..|.+++..- .| .--.-++-+|||+-... .....|+..+
T Consensus 293 ngGTVlLDeIgEmSp~-------------lQaKLLRFL~DGtFRR-VGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDL 358 (511)
T COG3283 293 NGGTVLLDEIGEMSPR-------------LQAKLLRFLNDGTFRR-VGEDHEVHVDVRVICATQVNLVELVQKGKFREDL 358 (511)
T ss_pred cCCeEEeehhhhcCHH-------------HHHHHHHHhcCCceee-cCCcceEEEEEEEEecccccHHHHHhcCchHHHH
Confidence 6789999999988765 7778999886543321 11 11123567888874221 1123455555
Q ss_pred hccCCeE-EEcCCCCH--HHHHHHHHhhHHHHHHHHHHHHhhcCc-eeEeCHHHHHHHHHHhhccccCCCccChhHHHHH
Q psy2406 347 QGRFPIR-VELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGI-KIEFVDDGIQRLAEIAYCINERTENIGARRLYTA 422 (464)
Q Consensus 347 l~R~d~i-V~f~~Lt~--~el~~Il~~~~~~ll~~~~~ll~~~gi-~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~ 422 (464)
.-|+.+. +.++||-+ .++.-.+ ..++++....+ |+ .-+++++.+.+|-++.. -+..|.|.++
T Consensus 359 fyRLNVLtl~~PpLRer~~di~pL~----e~Fv~q~s~el---g~p~pkl~~~~~~~L~~y~W-------pGNVRqL~N~ 424 (511)
T COG3283 359 FYRLNVLTLNLPPLRERPQDIMPLA----ELFVQQFSDEL---GVPRPKLAADLLTVLTRYAW-------PGNVRQLKNA 424 (511)
T ss_pred HHHhheeeecCCccccCcccchHHH----HHHHHHHHHHh---CCCCCccCHHHHHHHHHcCC-------CccHHHHHHH
Confidence 5555432 23333322 1222222 22333333332 33 45889999999987665 5789999999
Q ss_pred HHHHHH
Q psy2406 423 MEKLLE 428 (464)
Q Consensus 423 IE~~l~ 428 (464)
|-+.+.
T Consensus 425 iyRA~s 430 (511)
T COG3283 425 IYRALT 430 (511)
T ss_pred HHHHHH
Confidence 877654
No 266
>PRK14531 adenylate kinase; Provisional
Probab=97.74 E-value=2.7e-05 Score=72.94 Aligned_cols=32 Identities=16% Similarity=0.041 Sum_probs=28.2
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
+..|+++||||+||||+|+.||+.+|++++.+
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 35699999999999999999999999887654
No 267
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.74 E-value=6e-05 Score=82.48 Aligned_cols=130 Identities=22% Similarity=0.281 Sum_probs=78.0
Q ss_pred hhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccc---cCCCCCch
Q psy2406 268 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL---AKPSDLIP 344 (464)
Q Consensus 268 ~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~---~~p~~f~P 344 (464)
..+ +.+.+|+|||.-+.- ..|..||.+|..+.|..-.+.--.=.|-+|+|+..+. .....|+.
T Consensus 404 ~~A-~gGtlFldeIgd~p~-------------~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fre 469 (606)
T COG3284 404 EQA-DGGTLFLDEIGDMPL-------------ALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFRE 469 (606)
T ss_pred eec-CCCccHHHHhhhchH-------------HHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchH
Confidence 445 889999999988753 3788999999766554322111222346788875332 11234666
Q ss_pred hhhccCCe-EEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHH
Q psy2406 345 ELQGRFPI-RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 423 (464)
Q Consensus 345 Efl~R~d~-iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~I 423 (464)
.|-=|+.. .|.++||.+.. .-. .++.++.+ +.....+.++++++..|.. |.+ -+..|.|.++|
T Consensus 470 dLyyrL~~~~i~lP~lr~R~--d~~-----~~l~~~~~--~~~~~~~~l~~~~~~~l~~--~~W-----PGNirel~~v~ 533 (606)
T COG3284 470 DLYYRLNAFVITLPPLRERS--DRI-----PLLDRILK--RENDWRLQLDDDALARLLA--YRW-----PGNIRELDNVI 533 (606)
T ss_pred HHHHHhcCeeeccCchhccc--ccH-----HHHHHHHH--HccCCCccCCHHHHHHHHh--CCC-----CCcHHHHHHHH
Confidence 55544432 34566665321 111 12222211 2233678999999999974 444 58899999999
Q ss_pred HHHH
Q psy2406 424 EKLL 427 (464)
Q Consensus 424 E~~l 427 (464)
+...
T Consensus 534 ~~~~ 537 (606)
T COG3284 534 ERLA 537 (606)
T ss_pred HHHH
Confidence 9754
No 268
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.73 E-value=2.8e-05 Score=76.18 Aligned_cols=34 Identities=29% Similarity=0.208 Sum_probs=30.6
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
.|..|+++|||||||||+|+.||+.+|++++.++
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 4567999999999999999999999999888665
No 269
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.72 E-value=0.0013 Score=66.13 Aligned_cols=35 Identities=17% Similarity=0.044 Sum_probs=28.3
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCC------eEEeec
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAP------FIKIEA 104 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~------~i~ld~ 104 (464)
.|-.|.|.||.|||||++.+.+-+.+.-. ++.+|+
T Consensus 19 ~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~ 59 (325)
T PF07693_consen 19 DPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNA 59 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEcc
Confidence 34569999999999999999999888544 666665
No 270
>PRK13946 shikimate kinase; Provisional
Probab=97.71 E-value=3e-05 Score=72.78 Aligned_cols=35 Identities=29% Similarity=0.465 Sum_probs=31.9
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
.++.|+|+|++|||||++++.||+.+|+||+..|.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 45789999999999999999999999999997773
No 271
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.71 E-value=2.9e-05 Score=68.63 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=28.5
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
|++.||||||||++|+.||+.+|.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 789999999999999999999999998877
No 272
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.70 E-value=0.00055 Score=67.75 Aligned_cols=80 Identities=18% Similarity=0.306 Sum_probs=50.3
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccc-------cCCC---C
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL-------AKPS---D 341 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~-------~~p~---~ 341 (464)
.+=|||+|..-==+ .|. .-..|-.+|||+... .-.||+|-+|++..- .++. .
T Consensus 139 ~kFIlFcDDLSFe~--------gd~----~yK~LKs~LeG~ve~------rP~NVl~YATSNRRHLl~e~~~dn~~~~~e 200 (287)
T COG2607 139 EKFILFCDDLSFEE--------GDD----AYKALKSALEGGVEG------RPANVLFYATSNRRHLLPEDMKDNEGSTGE 200 (287)
T ss_pred ceEEEEecCCCCCC--------Cch----HHHHHHHHhcCCccc------CCCeEEEEEecCCcccccHhhhhCCCcccc
Confidence 56799999753111 111 223677888986432 346777777765321 1111 1
Q ss_pred Cc--------hhhhccCCeEEEcCCCCHHHHHHHHH
Q psy2406 342 LI--------PELQGRFPIRVELDSLSISDFTRIMT 369 (464)
Q Consensus 342 f~--------PEfl~R~d~iV~f~~Lt~~el~~Il~ 369 (464)
+- -.|-.||.....|.|.+.++..+|+.
T Consensus 201 ih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~ 236 (287)
T COG2607 201 IHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVD 236 (287)
T ss_pred cChhHHHHHhhchhhhcceeecccCCCHHHHHHHHH
Confidence 11 23668999999999999999999984
No 273
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.69 E-value=9e-05 Score=69.12 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=31.9
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeEEeecC
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEAT 105 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s 105 (464)
+.+|+|+||+|+|||++++.||+.++.+|+..|..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~ 38 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQE 38 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCch
Confidence 35699999999999999999999999999988863
No 274
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.66 E-value=5.6e-05 Score=75.16 Aligned_cols=35 Identities=23% Similarity=0.106 Sum_probs=28.6
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHh---CCCeEEeec
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEA 104 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~ 104 (464)
.+.+++|+||||||||.||-+||+.+ |.+++.+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~ 141 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA 141 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 35799999999999999999999887 555555544
No 275
>PRK14530 adenylate kinase; Provisional
Probab=97.66 E-value=3.8e-05 Score=73.67 Aligned_cols=31 Identities=13% Similarity=0.042 Sum_probs=27.9
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
+.|+++|||||||||+|+.||+.+|++++.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3599999999999999999999999887754
No 276
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.66 E-value=3.9e-05 Score=71.05 Aligned_cols=29 Identities=7% Similarity=-0.054 Sum_probs=25.5
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
|+++|||||||||+|+.||+.+|++.+.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999998665543
No 277
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.65 E-value=4.4e-05 Score=70.14 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=30.1
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
.+++|+|++|||||++|+.||+.+|.||+..|.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~ 35 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQ 35 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccH
Confidence 459999999999999999999999999997764
No 278
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.65 E-value=3.9e-05 Score=71.33 Aligned_cols=31 Identities=29% Similarity=0.223 Sum_probs=27.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
+|+++||||+|||++|+.||+.+|++++.++
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~ 31 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTG 31 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECc
Confidence 3899999999999999999999998876543
No 279
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.64 E-value=4.1e-05 Score=68.75 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=27.3
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
++|+||||+||||+|+.|++.++++++..|.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~D~ 32 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDD 32 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeCcc
Confidence 7899999999999999999999887775543
No 280
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.61 E-value=4.3e-05 Score=69.64 Aligned_cols=31 Identities=32% Similarity=0.325 Sum_probs=27.1
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
|+++|||||||||+|+.|++.++.+++..|.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~ 31 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDD 31 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCcc
Confidence 5789999999999999999999988775544
No 281
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.60 E-value=4.5e-05 Score=83.50 Aligned_cols=90 Identities=13% Similarity=0.113 Sum_probs=59.8
Q ss_pred hhhhccCccc-cccchhhhhccCchhHhhhhhh-----cchhHHHHhhhhhcccccccCCCCCCccccccCCCcceEEEe
Q psy2406 5 EIFNNIGVKA-VKIGTNACENAPSANNLRNKFG-----IRKAILKASVYIDAPNTRANNISRNNPVIRENNVILDMVIKV 78 (464)
Q Consensus 5 ~~~~~~gi~~-~k~~~~~~e~~~~~~~~l~~~~-----igq~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~p~~iLl~G 78 (464)
++|+-||.|- ..-.++.+-.-...+.....|. .|.++.+..+...++..-.++.... .-++|+|
T Consensus 41 R~~~~Ig~~~vv~~~~~~~~~rif~~~~i~ry~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~----------~IL~LvG 110 (644)
T PRK15455 41 RLLMAIGEPEMVDTAKDPRLSRIFSNRVIKRYPAFEEFYGMEEAIEQIVSYFRHAAQGLEEKK----------QILYLLG 110 (644)
T ss_pred HHHHHhCCceeeecCccchhhhhhcccccccccchhcccCcHHHHHHHHHHHHHHHHhcCCCC----------ceEEEec
Confidence 4667777774 2222222222223333344444 7999999998887777766763311 3599999
Q ss_pred cCCCchHHHHHHHHHHh-CCCeEEeec
Q psy2406 79 LLLVGKTEIARRLAKLS-NAPFIKIEA 104 (464)
Q Consensus 79 P~G~GKT~LAr~lA~~l-~~~~i~ld~ 104 (464)
|||+|||+||++||+.+ ..|++.+.+
T Consensus 111 PpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 111 PVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred CCCCCchHHHHHHHHHHHhCcceeecC
Confidence 99999999999999888 457777655
No 282
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.59 E-value=0.00016 Score=65.40 Aligned_cols=25 Identities=36% Similarity=0.161 Sum_probs=22.4
Q ss_pred EEecCCCchHHHHHHHHHHhCCCeE
Q psy2406 76 IKVLLLVGKTEIARRLAKLSNAPFI 100 (464)
Q Consensus 76 l~GP~G~GKT~LAr~lA~~l~~~~i 100 (464)
++||||+|||++|+.||+.+|.+.+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~i 25 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHI 25 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCccee
Confidence 6899999999999999999986554
No 283
>PLN02199 shikimate kinase
Probab=97.54 E-value=0.00013 Score=74.29 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=41.8
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISI 129 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~ 129 (464)
++|+|+|++|||||++++.||+.+|++|+..|. +.+.-+.|.+...|+...=+..|
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~--lIe~~~~G~sI~eIf~~~GE~~F 158 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDT--LIEQAMNGTSVAEIFVHHGENFF 158 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEehHH--HHHHHhcCCCHHHHHHHhCHHHH
Confidence 679999999999999999999999999998875 22222235566666655444444
No 284
>PRK06547 hypothetical protein; Provisional
Probab=97.54 E-value=7.9e-05 Score=69.85 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=29.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
.-|++.||+|||||++|+.||+.++++++.+|.
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~ 48 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAARTGFQLVHLDD 48 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeecccc
Confidence 458888999999999999999999999887765
No 285
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.54 E-value=0.0004 Score=70.80 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=31.4
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
.+..|.|+|++|||||++++.||+.+|+||+.+|.
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~ 166 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNR 166 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHH
Confidence 33679999999999999999999999999997763
No 286
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.50 E-value=7.5e-05 Score=70.51 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=25.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
+|+++||||+||||+|+.||+.+ ++.++|.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~--~i~hlst 31 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL--GLPHLDT 31 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCcEEcH
Confidence 59999999999999999999995 4555554
No 287
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.50 E-value=0.00032 Score=83.18 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=34.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCcee
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFT 108 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~ 108 (464)
+.+||-|.||+|||+|..+||+.+|-.+++++-|+-+
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQT 1580 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQT 1580 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccc
Confidence 7799999999999999999999999999999987654
No 288
>PRK02496 adk adenylate kinase; Provisional
Probab=97.49 E-value=8.7e-05 Score=69.15 Aligned_cols=31 Identities=23% Similarity=0.121 Sum_probs=27.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
..++++||||||||++|+.||+.+|++.+.+
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 3599999999999999999999999877644
No 289
>PRK14528 adenylate kinase; Provisional
Probab=97.48 E-value=9.5e-05 Score=69.74 Aligned_cols=31 Identities=19% Similarity=0.136 Sum_probs=27.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
++|+++||||+|||++|+.||+.+|++.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 3599999999999999999999999887654
No 290
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.48 E-value=7.4e-05 Score=69.35 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=28.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
-|+|.||||+||||+|+.|++.++.++++++.
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~ 35 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLAEPWLHFGV 35 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCccccCc
Confidence 49999999999999999999999888876643
No 291
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.46 E-value=0.00037 Score=69.22 Aligned_cols=27 Identities=19% Similarity=0.119 Sum_probs=24.1
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAP 98 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~ 98 (464)
..++++||+|||||+|++.+++.+...
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccc
Confidence 569999999999999999999988654
No 292
>PRK06762 hypothetical protein; Provisional
Probab=97.45 E-value=0.00013 Score=66.69 Aligned_cols=33 Identities=21% Similarity=0.165 Sum_probs=27.3
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
|.-+++.|+|||||||+|+.|++.++..+..++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 556999999999999999999999864454444
No 293
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.44 E-value=0.00011 Score=70.38 Aligned_cols=29 Identities=28% Similarity=0.263 Sum_probs=26.6
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
|+++||||+|||++|+.||+.+|++.+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 89999999999999999999999877754
No 294
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.43 E-value=0.0001 Score=68.05 Aligned_cols=30 Identities=10% Similarity=-0.036 Sum_probs=26.1
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
-+++.|||||||||+|+.||+.+|.+.+..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 489999999999999999999998765533
No 295
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.42 E-value=0.00038 Score=65.05 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=23.9
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhC
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
.+..|++.||||+||||++..+|..+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 346799999999999999999998873
No 296
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.40 E-value=0.00014 Score=69.80 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=27.2
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
.|+++||||+|||++|+.||+.+|++.+.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 489999999999999999999999877754
No 297
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.39 E-value=0.00022 Score=69.69 Aligned_cols=34 Identities=15% Similarity=0.078 Sum_probs=26.0
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecC
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEAT 105 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s 105 (464)
.|..+|+||+||+|||++|+.++. ...++..|++
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~ 44 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMS 44 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC--CCEEEecccc
Confidence 456799999999999999999862 2346666653
No 298
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.37 E-value=0.0015 Score=77.82 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=35.5
Q ss_pred CCCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceee
Q psy2406 69 NVILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTE 109 (464)
Q Consensus 69 ~~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~ 109 (464)
.+| +|+-|||.+|||++..-+|+++|-.|++++..+.++
T Consensus 888 ~fP--~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTd 926 (4600)
T COG5271 888 NFP--LLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTD 926 (4600)
T ss_pred CCc--EEEecCCCCCcchHHHHHHHHhCccEEEecCcccch
Confidence 355 999999999999999999999999999999887763
No 299
>PLN02200 adenylate kinase family protein
Probab=97.37 E-value=0.00017 Score=70.73 Aligned_cols=31 Identities=6% Similarity=-0.092 Sum_probs=27.0
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeE
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFI 100 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i 100 (464)
.|..|+++|||||||||+|+.||+.+|++.+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~hi 72 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKHL 72 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 4567999999999999999999999987643
No 300
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.36 E-value=0.00033 Score=76.80 Aligned_cols=65 Identities=15% Similarity=0.277 Sum_probs=51.0
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINK 139 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~ 139 (464)
+.|+|+|++|||||+++|.||+.+|+||+.+|. +.+ ...|.+...|+..-=+..|+....+..++
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~--~ie-~~~g~si~eif~~~Ge~~FR~~E~~~l~~ 71 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADV--EIE-REIGMSIPSYFEEYGEPAFREVEADVVAD 71 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEEchH--HHH-HHHCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999996 222 23477778888777777766665555544
No 301
>PRK14527 adenylate kinase; Provisional
Probab=97.36 E-value=0.00013 Score=68.62 Aligned_cols=31 Identities=19% Similarity=-0.008 Sum_probs=27.0
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeEE
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFIK 101 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ 101 (464)
|.-|+++||||+|||++|+.||+.++.+.+.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 4569999999999999999999999876553
No 302
>PF05729 NACHT: NACHT domain
Probab=97.36 E-value=0.0018 Score=57.66 Aligned_cols=22 Identities=27% Similarity=0.228 Sum_probs=20.7
Q ss_pred eEEEecCCCchHHHHHHHHHHh
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l 95 (464)
++++|+||+|||++++.++..+
T Consensus 3 l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999776
No 303
>KOG1970|consensus
Probab=97.32 E-value=0.0052 Score=66.86 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=27.2
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
-+||+||+||||||..+.||+++|..++.=.
T Consensus 112 iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 112 ILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred EEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 4889999999999999999999998776543
No 304
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.31 E-value=0.00017 Score=67.91 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=25.3
Q ss_pred cceEEEecCCCchHHHHHHHHHHh---CCCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~ 104 (464)
.|++|+||||||||.||-++|+++ |.+...++.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA 83 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec
Confidence 679999999999999999999876 555554443
No 305
>PRK04182 cytidylate kinase; Provisional
Probab=97.30 E-value=0.00017 Score=66.03 Aligned_cols=29 Identities=28% Similarity=0.172 Sum_probs=26.9
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEE
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIK 101 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ 101 (464)
.|++.|++|||||++|+.||+.+|.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 38999999999999999999999998875
No 306
>KOG3347|consensus
Probab=97.29 E-value=0.0002 Score=66.10 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=29.1
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
.+||+.|-||||||++|.+||..+|.++|.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 57999999999999999999999999988553
No 307
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.29 E-value=0.0002 Score=71.67 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=27.0
Q ss_pred CcceEEEecCCCchHHHHHHHHHHh-CCCeEEee
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLS-NAPFIKIE 103 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l-~~~~i~ld 103 (464)
|.-+++.|||||||||+|+.|++.+ +..++..|
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D 35 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRD 35 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEecc
Confidence 3458999999999999999999999 65555443
No 308
>PRK04040 adenylate kinase; Provisional
Probab=97.26 E-value=0.00026 Score=67.18 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=26.1
Q ss_pred CcceEEEecCCCchHHHHHHHHHHh--CCCeE
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLS--NAPFI 100 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l--~~~~i 100 (464)
|+.|+++|+|||||||+++.|++.+ +.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 4679999999999999999999999 55554
No 309
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.24 E-value=0.00025 Score=72.56 Aligned_cols=37 Identities=30% Similarity=0.229 Sum_probs=33.4
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCce
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKF 107 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~ 107 (464)
|+-|+++||||||||+||..||+.++++++..|.-.+
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qv 40 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQV 40 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccce
Confidence 3559999999999999999999999999999988655
No 310
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.00088 Score=69.34 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=25.5
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCC--eEEeecCce
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSNAP--FIKIEATKF 107 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~~~--~i~ld~s~~ 107 (464)
+.|.||+||||||+-|.||-..... -+.+++...
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~v 67 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDV 67 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence 8899999999999999999765322 444444444
No 311
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.22 E-value=0.00026 Score=66.17 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=26.2
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCeEE
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSNAPFIK 101 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~~~~i~ 101 (464)
|-+.|||||||||+|+.||+.+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 7789999999999999999999999883
No 312
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.21 E-value=0.00027 Score=60.64 Aligned_cols=22 Identities=36% Similarity=0.306 Sum_probs=21.0
Q ss_pred eEEEecCCCchHHHHHHHHHHh
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l 95 (464)
|++.|+|||||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997
No 313
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.20 E-value=0.00027 Score=60.81 Aligned_cols=23 Identities=30% Similarity=0.185 Sum_probs=20.7
Q ss_pred eEEEecCCCchHHHHHHHHHHhC
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
|.|+||||+|||++|+.||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999997764
No 314
>PLN02674 adenylate kinase
Probab=97.20 E-value=0.00029 Score=69.82 Aligned_cols=30 Identities=7% Similarity=-0.110 Sum_probs=27.0
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEE
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIK 101 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ 101 (464)
.+|+|+||||+||||+|+.||+.+|++.+.
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his 61 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLA 61 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEc
Confidence 569999999999999999999999876663
No 315
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.19 E-value=0.00032 Score=68.28 Aligned_cols=34 Identities=29% Similarity=0.335 Sum_probs=27.8
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCeEEeecCce
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKF 107 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~ 107 (464)
.+++||||||||.+|-.+|+.+|+|++.+|.-..
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~ 37 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQC 37 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceec
Confidence 7899999999999999999999999999998554
No 316
>PRK01184 hypothetical protein; Provisional
Probab=97.18 E-value=0.00031 Score=65.40 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=25.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
-|+++||||+||||+|+ +++.+|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 48999999999999998 789999888754
No 317
>PF14516 AAA_35: AAA-like domain
Probab=97.18 E-value=0.0067 Score=62.45 Aligned_cols=36 Identities=22% Similarity=0.198 Sum_probs=30.0
Q ss_pred cceEEEecCCCchHHHHHHHHHHh---CCCeEEeecCce
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEATKF 107 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s~~ 107 (464)
.-+.+.||..+|||+|...+.+.+ |...+.+|+...
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~ 70 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQL 70 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecC
Confidence 458999999999999998887665 778888888765
No 318
>PLN02165 adenylate isopentenyltransferase
Probab=97.15 E-value=0.00042 Score=71.59 Aligned_cols=36 Identities=19% Similarity=0.124 Sum_probs=32.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCce
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKF 107 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~ 107 (464)
+.++++||||||||+||..||+.++.+++..|.-.+
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~Qv 79 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQV 79 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcCCceecCChhee
Confidence 469999999999999999999999999998887654
No 319
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.15 E-value=0.00031 Score=63.84 Aligned_cols=29 Identities=28% Similarity=0.221 Sum_probs=26.5
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
|.+.|++|||||++|+.||+.+|.|++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 88999999999999999999999887643
No 320
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.14 E-value=0.00081 Score=70.96 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=23.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAP 98 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~ 98 (464)
...+++||||||||+|++.|++.....
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 559999999999999999999887543
No 321
>PRK14526 adenylate kinase; Provisional
Probab=97.12 E-value=0.00042 Score=67.09 Aligned_cols=29 Identities=28% Similarity=0.130 Sum_probs=25.9
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEE
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIK 101 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ 101 (464)
+++|+|||||||||+|+.||+.++.+++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 48999999999999999999999876653
No 322
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.11 E-value=0.0012 Score=69.86 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=23.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAP 98 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~ 98 (464)
..++++||||||||+|++.+++.....
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhccc
Confidence 459999999999999999999987544
No 323
>PRK08233 hypothetical protein; Provisional
Probab=97.11 E-value=0.00049 Score=63.22 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=27.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC-CCeEEeecC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN-APFIKIEAT 105 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~-~~~i~ld~s 105 (464)
.-|.+.||||+||||+|+.||+.++ ++++..|..
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~ 38 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY 38 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE
Confidence 3478889999999999999999985 556666653
No 324
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.10 E-value=0.00055 Score=71.20 Aligned_cols=35 Identities=20% Similarity=0.206 Sum_probs=26.3
Q ss_pred eEEEecCCCchHHHHHHHHHHhC--CCeEEeecCcee
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSN--APFIKIEATKFT 108 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~--~~~i~ld~s~~~ 108 (464)
+.|.||+||||||+-|+||..-. .=-|.+++..++
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~ 70 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDIT 70 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC
Confidence 56999999999999999997652 225556555554
No 325
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.00043 Score=70.70 Aligned_cols=37 Identities=27% Similarity=0.223 Sum_probs=34.0
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCce
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKF 107 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~ 107 (464)
|+-++++|||+||||.||-+||+.+|+++|.+|.-..
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQv 39 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQV 39 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhh
Confidence 4559999999999999999999999999999998766
No 326
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.08 E-value=0.0016 Score=63.69 Aligned_cols=33 Identities=24% Similarity=0.199 Sum_probs=24.9
Q ss_pred cceEEEecCCCchHHHHHHHHHHh--CCCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS--NAPFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l--~~~~i~ld~ 104 (464)
.-+.++||+|||||||-|||...- ..--|.+++
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g 63 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDG 63 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECC
Confidence 348999999999999999997542 333555655
No 327
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.06 E-value=0.0003 Score=71.72 Aligned_cols=66 Identities=21% Similarity=0.138 Sum_probs=41.8
Q ss_pred hhhhcchhHHHHhhhhhcccccccCCCC-C--CccccccCCCcceEEEecCCCchHHHHHHHHHHhCCC
Q psy2406 33 NKFGIRKAILKASVYIDAPNTRANNISR-N--NPVIRENNVILDMVIKVLLLVGKTEIARRLAKLSNAP 98 (464)
Q Consensus 33 ~~~~igq~~~~~~v~~~~~~~r~~~~~~-~--~~~~~~~~~p~~iLl~GP~G~GKT~LAr~lA~~l~~~ 98 (464)
...++.++++...|+..+...--..... . -..++....|-.|++.||||||||++|+.||..+|.+
T Consensus 51 g~~~i~~~el~~~V~~~L~~~~~~~~~~~y~~~~~i~~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 51 GIKEITKEELRRRVYYKLIEKDYEEVAEKYLLWRRIRKSKEPIIILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred CCEEeeHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3455666666666666554432111000 0 0112232456779999999999999999999999887
No 328
>PHA00729 NTP-binding motif containing protein
Probab=97.06 E-value=0.00036 Score=68.44 Aligned_cols=26 Identities=27% Similarity=0.040 Sum_probs=23.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNA 97 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~ 97 (464)
.+++++||||||||+||.+||+.++.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~ 43 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFW 43 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46999999999999999999999863
No 329
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.05 E-value=0.00039 Score=71.72 Aligned_cols=32 Identities=19% Similarity=0.051 Sum_probs=26.3
Q ss_pred cceEEEecCCCchHHHHHHHHHHh---CCCeEEee
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIE 103 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld 103 (464)
.+++|+||||||||+||.++|+++ |..++-++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 679999999999999999999987 44444443
No 330
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.03 E-value=0.00047 Score=70.45 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=27.8
Q ss_pred CcceEEEecCCCchHHHHHHHHHHh---CCCeEEeec
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEA 104 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~ 104 (464)
+++++|+||+|||||+||.++|+.+ |.++..+..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~ 192 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF 192 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH
Confidence 3689999999999999999999998 555554443
No 331
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.02 E-value=0.00054 Score=64.27 Aligned_cols=31 Identities=10% Similarity=-0.010 Sum_probs=26.3
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
..++|+||+|||||||++.|+..++.+|...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~ 33 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVA 33 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEc
Confidence 3589999999999999999999988665443
No 332
>PLN02459 probable adenylate kinase
Probab=97.02 E-value=0.00062 Score=68.15 Aligned_cols=31 Identities=35% Similarity=0.358 Sum_probs=27.0
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
.+|+|+||||+||||+|+.||+.+|.+.+.+
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~ 60 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIAT 60 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeC
Confidence 4699999999999999999999998766643
No 333
>PRK14529 adenylate kinase; Provisional
Probab=96.99 E-value=0.00053 Score=67.13 Aligned_cols=29 Identities=17% Similarity=0.055 Sum_probs=26.3
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEE
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIK 101 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ 101 (464)
+|+|.|||||||||+|+.||+.++.+.+.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is 30 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIE 30 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcc
Confidence 48999999999999999999999987653
No 334
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.99 E-value=0.00062 Score=62.21 Aligned_cols=58 Identities=14% Similarity=0.036 Sum_probs=34.1
Q ss_pred cchhHHHHhhhhhcccccccCCCCCCccccccCCCcceEEEecCCCchHHHHHHHHHHhCCC---eEEeecCce
Q psy2406 37 IRKAILKASVYIDAPNTRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIARRLAKLSNAP---FIKIEATKF 107 (464)
Q Consensus 37 igq~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LAr~lA~~l~~~---~i~ld~s~~ 107 (464)
+|.+.....+...+. . .. ...|..++++||+|+|||+|.+.+...+..+ ++.+++...
T Consensus 3 vgR~~e~~~l~~~l~-~-~~-----------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 3 VGREEEIERLRDLLD-A-AQ-----------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp TT-HHHHHHHHHTTG-G-TS-----------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCHHHHHHHHHHHHH-H-HH-----------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 455566666666554 1 11 1234679999999999999999988777433 777666544
No 335
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.99 E-value=0.0034 Score=61.42 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=20.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
+---|+||+||||||+-|++=+..
T Consensus 34 ~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHHhhc
Confidence 347799999999999999987765
No 336
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.00055 Score=64.50 Aligned_cols=30 Identities=23% Similarity=0.182 Sum_probs=27.9
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
.|++.|.|||||||+|+.|+ .+|.+.+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 48999999999999999999 9999988776
No 337
>PRK06696 uridine kinase; Validated
Probab=96.97 E-value=0.00077 Score=65.17 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=31.2
Q ss_pred cceEEEecCCCchHHHHHHHHHHh---CCCeEEeecCce
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEATKF 107 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s~~ 107 (464)
.-|.+.|+|||||||+|+.||+.+ |.+.+.+.+..|
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 449999999999999999999998 778888776666
No 338
>KOG0058|consensus
Probab=96.97 E-value=0.0011 Score=73.87 Aligned_cols=42 Identities=31% Similarity=0.316 Sum_probs=30.6
Q ss_pred HHhhc--cCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceee
Q psy2406 266 AINNV--EQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN 315 (464)
Q Consensus 266 Av~~a--~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~ 315 (464)
|++|| ..|+|+++||.-++.... +..-||++|-+++++++|-
T Consensus 614 AIARALlr~P~VLILDEATSALDae--------SE~lVq~aL~~~~~~rTVl 657 (716)
T KOG0058|consen 614 AIARALLRNPRVLILDEATSALDAE--------SEYLVQEALDRLMQGRTVL 657 (716)
T ss_pred HHHHHHhcCCCEEEEechhhhcchh--------hHHHHHHHHHHhhcCCeEE
Confidence 55554 689999999998876321 2235888888999998764
No 339
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.96 E-value=0.00076 Score=53.58 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=24.8
Q ss_pred eEEEecCCCchHHHHHHHHHHh-CCCeEEeec
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLS-NAPFIKIEA 104 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l-~~~~i~ld~ 104 (464)
+.+.|+||+|||+++++|++.+ +.++..++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence 6789999999999999999996 344444444
No 340
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.95 E-value=0.0014 Score=71.12 Aligned_cols=48 Identities=23% Similarity=0.450 Sum_probs=36.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHH
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRD 123 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~ 123 (464)
+|.|+|++|||||++++.||+.+|++|+..|.- .+. ..|.+...++..
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~--i~~-~~g~~i~~i~~~ 49 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEE--IER-REGRSVRRIFEE 49 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHH--HHH-HcCCCHHHHHHH
Confidence 589999999999999999999999999988752 211 235554444443
No 341
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.93 E-value=0.0026 Score=67.76 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=21.4
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-|++++||||||||++|.+|+..
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHH
Confidence 68999999999999999998876
No 342
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.90 E-value=0.0023 Score=58.21 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=26.6
Q ss_pred eEEEecCCCchHHHHHHHHHHh---CCCeEEeec
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLS---NAPFIKIEA 104 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~ 104 (464)
+++.|+||+|||++|+.|+..+ +.+.+.++.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~ 35 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG 35 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 7899999999999999999998 666666654
No 343
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=96.89 E-value=0.0011 Score=60.82 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=23.7
Q ss_pred CCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 80 LLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 80 ~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
||||||++++.||+.+|+||+.+|.
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~ 25 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDD 25 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCH
Confidence 7999999999999999999998876
No 344
>PRK09183 transposase/IS protein; Provisional
Probab=96.88 E-value=0.00075 Score=67.21 Aligned_cols=24 Identities=29% Similarity=0.181 Sum_probs=21.8
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.+++|+||||||||+||.+|+..+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998764
No 345
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.87 E-value=0.00086 Score=68.02 Aligned_cols=35 Identities=31% Similarity=0.391 Sum_probs=32.2
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCeEEeecCcee
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFT 108 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~ 108 (464)
|+++||||||||+||..||+.++.+++.+|.-.+.
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY 36 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIY 36 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhhee
Confidence 78999999999999999999999999999886663
No 346
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.85 E-value=0.00082 Score=62.17 Aligned_cols=27 Identities=30% Similarity=0.110 Sum_probs=24.2
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhC
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
.|.-|+|.||||||||++|+.|++.+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345699999999999999999999986
No 347
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.85 E-value=0.0011 Score=65.07 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=25.0
Q ss_pred eEEEecCCCchHHHHHHHHHHh---CCCeEEee
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLS---NAPFIKIE 103 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld 103 (464)
|+|+|+|||||||+|+.||+.+ +.+++.++
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~ 34 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILG 34 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEc
Confidence 7899999999999999999987 34555554
No 348
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.85 E-value=0.068 Score=57.03 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=28.7
Q ss_pred eEEEecCCCchHHHH--HHHHHHhCCCeEEeecCceee
Q psy2406 74 MVIKVLLLVGKTEIA--RRLAKLSNAPFIKIEATKFTE 109 (464)
Q Consensus 74 iLl~GP~G~GKT~LA--r~lA~~l~~~~i~ld~s~~~~ 109 (464)
|++.||.||||++|. ++|...-+ .+.+||..+.+
T Consensus 20 IvV~GPrGSGK~elV~d~~L~~r~~--vL~IDC~~i~~ 55 (431)
T PF10443_consen 20 IVVQGPRGSGKRELVMDHVLKDRKN--VLVIDCDQIVK 55 (431)
T ss_pred EEEECCCCCCccHHHHHHHHhCCCC--EEEEEChHhhh
Confidence 889999999999999 66666544 88999998875
No 349
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.84 E-value=0.0026 Score=62.83 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=21.8
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.|.|++|||||||||+-|-||+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~ 161 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLL 161 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHh
Confidence 568999999999999999999876
No 350
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.84 E-value=0.0017 Score=63.05 Aligned_cols=53 Identities=23% Similarity=0.247 Sum_probs=34.0
Q ss_pred eEEEecCCCchHHHHHHHHHHhC---CCeEEeecCceeeccccccChHHHHHHHHHHH
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSN---APFIKIEATKFTEVGYVGRDVDTIIRDLIDIS 128 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~---~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s 128 (464)
++|.|+||+|||++|+-||+++. ...+++..... .+|...+.-.+.+..+..+
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~--~~i~~DEslpi~ke~yres 59 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYL--RGILWDESLPILKEVYRES 59 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhh--hheecccccchHHHHHHHH
Confidence 89999999999999999999983 34444433111 2344333344555555444
No 351
>KOG3354|consensus
Probab=96.83 E-value=0.00091 Score=62.23 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=29.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
..|++.|++||||||++++|+++++++|+.-|-
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd 45 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGLKFIDGDD 45 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCCccccccc
Confidence 469999999999999999999999999986553
No 352
>PRK13808 adenylate kinase; Provisional
Probab=96.82 E-value=0.00097 Score=68.96 Aligned_cols=30 Identities=17% Similarity=0.102 Sum_probs=26.7
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
.|+|+||||+|||++|+.||+.+|++.+.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 499999999999999999999998866644
No 353
>PLN02840 tRNA dimethylallyltransferase
Probab=96.82 E-value=0.0013 Score=69.88 Aligned_cols=36 Identities=28% Similarity=0.258 Sum_probs=32.9
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCce
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKF 107 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~ 107 (464)
.-|++.||||+|||+||..||+.++.+++.+|.-.+
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qv 57 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADSVQV 57 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccce
Confidence 459999999999999999999999999999988655
No 354
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.81 E-value=0.00088 Score=61.18 Aligned_cols=33 Identities=27% Similarity=0.235 Sum_probs=23.5
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCeEEeecCce
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKF 107 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~ 107 (464)
|.|+|++|||||||++.|++. |.+++.=-+..+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~ 34 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREI 34 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHH
Confidence 899999999999999999999 888773333333
No 355
>PRK06921 hypothetical protein; Provisional
Probab=96.80 E-value=0.00089 Score=67.00 Aligned_cols=24 Identities=17% Similarity=-0.014 Sum_probs=22.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.+++|+||||+|||+||.++|+.+
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l 141 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANEL 141 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 579999999999999999999986
No 356
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.77 E-value=0.0062 Score=64.32 Aligned_cols=26 Identities=23% Similarity=0.115 Sum_probs=23.3
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHh
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.|..++|+||+|+||||.+..||..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999765
No 357
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.74 E-value=0.0044 Score=67.16 Aligned_cols=33 Identities=15% Similarity=0.075 Sum_probs=26.2
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCC--eEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAP--FIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~--~i~ld~ 104 (464)
..+.+.||+|+|||||++.|+..+... -+.+|+
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g 396 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDG 396 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 559999999999999999999876322 455555
No 358
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.73 E-value=0.0022 Score=59.59 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=31.9
Q ss_pred CcceEEEecCCCchHHHHHHHHHHh---CCCeEEeecCcee
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEATKFT 108 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s~~~ 108 (464)
|.-|.|.|.||+|||+||++|.+.+ |.+.+.+|+..+-
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 3458999999999999999999887 7889999987764
No 359
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.73 E-value=0.0014 Score=62.85 Aligned_cols=30 Identities=23% Similarity=0.156 Sum_probs=26.1
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeE
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFI 100 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i 100 (464)
|.-+++.|+||+|||++|+.||..+|.+++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~~ 32 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDIV 32 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 355999999999999999999999987653
No 360
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.71 E-value=0.0032 Score=59.67 Aligned_cols=38 Identities=13% Similarity=0.064 Sum_probs=30.1
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHh---CCCeEEeecCce
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEATKF 107 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s~~ 107 (464)
.|.-+.|+|++|+|||++|+.|+..+ |...+.+|+..+
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 44669999999999999999999987 455666765443
No 361
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.71 E-value=0.00098 Score=61.60 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=24.4
Q ss_pred EecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 77 KVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 77 ~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
+||||||||+++++||..+|.+++.-|.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~ 28 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDF 28 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCcc
Confidence 4999999999999999999987776653
No 362
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.71 E-value=0.0018 Score=57.12 Aligned_cols=31 Identities=19% Similarity=0.157 Sum_probs=25.1
Q ss_pred eEEEecCCCchHHHHHHHHHHh---CCCeEEeec
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLS---NAPFIKIEA 104 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~ 104 (464)
++++||||+|||+++..++... +.+.+.++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 35 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI 35 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 7899999999999999999887 445555444
No 363
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.71 E-value=0.005 Score=61.60 Aligned_cols=36 Identities=17% Similarity=0.031 Sum_probs=27.5
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCC--eEEeecCce
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAP--FIKIEATKF 107 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~--~i~ld~s~~ 107 (464)
+-+.+.||.|||||||-|+|+..+... -+.+|+..+
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i 66 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDI 66 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCch
Confidence 348899999999999999999987532 455555433
No 364
>PLN02748 tRNA dimethylallyltransferase
Probab=96.71 E-value=0.0014 Score=70.67 Aligned_cols=38 Identities=18% Similarity=0.113 Sum_probs=33.8
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCce
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKF 107 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~ 107 (464)
.++-|++.||||||||+||..||+.+++++|..|.-.+
T Consensus 21 ~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQV 58 (468)
T PLN02748 21 KAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQV 58 (468)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchhee
Confidence 33569999999999999999999999999999987666
No 365
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.67 E-value=0.0017 Score=60.74 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=26.0
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
|.++|++||||||+++.+++ +|++++..|
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 78999999999999999999 898877655
No 366
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.65 E-value=0.0017 Score=63.03 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=26.9
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEE
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIK 101 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ 101 (464)
..|.+.||+||||||+|+.||+.++.+++.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~ 32 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLD 32 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 458899999999999999999999988773
No 367
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.65 E-value=0.0017 Score=58.70 Aligned_cols=36 Identities=22% Similarity=0.185 Sum_probs=28.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCcee
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFT 108 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~ 108 (464)
..++|.|+.|+|||+++|.+++.+|++- .++.++|+
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~~~-~v~SPTf~ 58 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGIQG-NVTSPTFT 58 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCC-cccCCCee
Confidence 3589999999999999999999998752 34444454
No 368
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.65 E-value=0.0015 Score=62.24 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=26.9
Q ss_pred eEEEecCCCchHHHHHHHHHHh-CCCeEEeec
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLS-NAPFIKIEA 104 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l-~~~~i~ld~ 104 (464)
|.+.|+||||||++|+.|++.+ ++.++.+|.
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~Dd 33 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQDD 33 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEcccc
Confidence 6788999999999999999998 677777664
No 369
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.64 E-value=0.0014 Score=60.54 Aligned_cols=25 Identities=8% Similarity=-0.134 Sum_probs=22.6
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNA 97 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~ 97 (464)
-+++.||||||||+++++|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 3889999999999999999998754
No 370
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.60 E-value=0.0027 Score=60.44 Aligned_cols=26 Identities=19% Similarity=-0.015 Sum_probs=23.4
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhC
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
|.-|.+.||||||||||++.|++.++
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34599999999999999999999984
No 371
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.59 E-value=0.0018 Score=60.96 Aligned_cols=22 Identities=23% Similarity=0.087 Sum_probs=20.8
Q ss_pred eEEEecCCCchHHHHHHHHHHh
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l 95 (464)
|.+.||+||||||++++|+..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999987
No 372
>KOG0477|consensus
Probab=96.58 E-value=0.0041 Score=68.39 Aligned_cols=61 Identities=11% Similarity=0.017 Sum_probs=37.6
Q ss_pred cchhHHHHhhhhhcccccccCCCCCCccccccCCCcceEEEecCCCchHHHHHHHHHHhCCCeEE
Q psy2406 37 IRKAILKASVYIDAPNTRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIARRLAKLSNAPFIK 101 (464)
Q Consensus 37 igq~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ 101 (464)
.|-...+.+|+-++-.--+.+.... -..+ .--++||+|-||||||.+-|-.++.....++.
T Consensus 452 yGh~~VK~AvAlaLfGGv~kn~~~k-hkvR---GDinvLL~GDPGTaKSQFLKY~eK~s~RAV~t 512 (854)
T KOG0477|consen 452 YGHEDVKRAVALALFGGVPKNPGGK-HKVR---GDINVLLLGDPGTAKSQFLKYAEKTSPRAVFT 512 (854)
T ss_pred hchHHHHHHHHHHHhcCCccCCCCC-ceec---cceeEEEecCCCccHHHHHHHHHhcCcceeEe
Confidence 4556666666665433322221110 0111 22679999999999999999999887665553
No 373
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.57 E-value=0.0025 Score=58.82 Aligned_cols=33 Identities=30% Similarity=0.303 Sum_probs=26.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHh---CCCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~ 104 (464)
..|.|.|+||+|||++|+.||..+ |..+..+|+
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~ 40 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG 40 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 459999999999999999999987 334454544
No 374
>KOG0056|consensus
Probab=96.57 E-value=0.037 Score=59.95 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=34.7
Q ss_pred CCCCccccccC---CC-cceEEEecCCCchHHHHHHHHHHhCCC--eEEeec
Q psy2406 59 SRNNPVIRENN---VI-LDMVIKVLLLVGKTEIARRLAKLSNAP--FIKIEA 104 (464)
Q Consensus 59 ~~~~~~~~~~~---~p-~~iLl~GP~G~GKT~LAr~lA~~l~~~--~i~ld~ 104 (464)
+|.+|.+++-. +| +.+-|.||+|.|||++-|.|-+.+++. .|.+|+
T Consensus 548 ~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDg 599 (790)
T KOG0056|consen 548 DPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDG 599 (790)
T ss_pred CCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcC
Confidence 55666665542 45 669999999999999999999988654 555554
No 375
>PRK08356 hypothetical protein; Provisional
Probab=96.56 E-value=0.0023 Score=60.57 Aligned_cols=29 Identities=14% Similarity=0.123 Sum_probs=23.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEE
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIK 101 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ 101 (464)
.-|+|+||||+||||+|+.|++ .|.+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~-~g~~~is 34 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE-KGFCRVS 34 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCcEEe
Confidence 3488999999999999999964 7776443
No 376
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.56 E-value=0.0017 Score=60.86 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=24.7
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeE
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFI 100 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i 100 (464)
.+.++||+|+|||+++++|+..++..++
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~~~i 32 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSAKFI 32 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEE
Confidence 4899999999999999999999987533
No 377
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.56 E-value=0.0019 Score=61.96 Aligned_cols=31 Identities=23% Similarity=0.176 Sum_probs=24.7
Q ss_pred cccccCCCcceEEEecCCCchHHHHHHHHHH
Q psy2406 64 VIRENNVILDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 64 ~~~~~~~p~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
.+.+...|.-++|+||||||||+|++.|++.
T Consensus 6 ~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 6 LFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred ccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3344445677999999999999999999865
No 378
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.56 E-value=0.0082 Score=65.94 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=27.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCC--eEEeecCce
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAP--FIKIEATKF 107 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~--~i~ld~s~~ 107 (464)
..+.+.||+|+|||||++.|+..+ -. -+.+|+.++
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i 413 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIEL 413 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEec
Confidence 558999999999999999999987 21 455665443
No 379
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.55 E-value=0.002 Score=57.95 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.3
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCC
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSNAP 98 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~~~ 98 (464)
++++||||||||+|++.|++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 6889999999999999999987544
No 380
>PRK14974 cell division protein FtsY; Provisional
Probab=96.54 E-value=0.0084 Score=62.18 Aligned_cols=35 Identities=17% Similarity=0.053 Sum_probs=26.8
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHh---CCCeEEeec
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEA 104 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~ 104 (464)
.|.-++|+||||+||||++..||..+ |..+.-+++
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 46779999999999999888888765 444444444
No 381
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.53 E-value=0.0022 Score=61.20 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=27.7
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
.|.++||+|||||++|+.+++.+|++++..|
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~~D 33 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDAD 33 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEeeCc
Confidence 4899999999999999999999899888544
No 382
>PHA02624 large T antigen; Provisional
Probab=96.53 E-value=0.0026 Score=70.32 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=30.2
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEeecCc
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATK 106 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~ 106 (464)
.++|+||||||||+++.+|++.++...+.++++.
T Consensus 433 ~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt 466 (647)
T PHA02624 433 YWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP 466 (647)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc
Confidence 6999999999999999999999977777787654
No 383
>KOG0482|consensus
Probab=96.52 E-value=0.011 Score=63.99 Aligned_cols=164 Identities=18% Similarity=0.148 Sum_probs=84.4
Q ss_pred hhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeee-eeeeecCcee--EeeccCCccc--cCC---
Q psy2406 268 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGIIKTDHI--LFIASGAFHL--AKP--- 339 (464)
Q Consensus 268 ~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~-~~~~i~Tsni--l~I~ag~f~~--~~p--- 339 (464)
-.| ..+|-+|||+||+...-. .++-.+||-.+++. +.|+..|=|. -+++|.+--. =+|
T Consensus 436 VLA-D~GICCIDEfDKM~e~DR-------------tAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs 501 (721)
T KOG0482|consen 436 VLA-DGGICCIDEFDKMDESDR-------------TAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPRRS 501 (721)
T ss_pred EEc-cCceEeehhhhhhhhhhh-------------HHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCcccC
Confidence 445 789999999999974322 26777888777765 3355544443 2334432110 111
Q ss_pred ----CCCchhhhccCCeEEEcC-CCCHHHHHHHHHhh-----------------HHHHHHHHHHHHhhcCceeEeCHHHH
Q psy2406 340 ----SDLIPELQGRFPIRVELD-SLSISDFTRIMTST-----------------NVCLTKQYEALLATEGIKIEFVDDGI 397 (464)
Q Consensus 340 ----~~f~PEfl~R~d~iV~f~-~Lt~~el~~Il~~~-----------------~~~ll~~~~~ll~~~gi~L~~sdeAl 397 (464)
-.++++||+|||....+. .++.+.=..+.+.. .-.+++.|...++. ..-.+.++.-
T Consensus 502 ~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~--~~P~vp~~l~ 579 (721)
T KOG0482|consen 502 PEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKR--KNPVVPEALA 579 (721)
T ss_pred hhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhh--cCCCCCHHHH
Confidence 148899999999754332 22221111111000 01223333333332 3346677777
Q ss_pred HHHHHHhhcc------ccCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHh
Q psy2406 398 QRLAEIAYCI------NERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRL 450 (464)
Q Consensus 398 ~~LA~~a~~~------~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~ 450 (464)
++|+...... +.+..-..+|.|..++.-... +..+--. -.|+.++|.+++
T Consensus 580 dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~A--larLRls-~~V~~~DV~EAL 635 (721)
T KOG0482|consen 580 DYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTA--LARLRLS-DSVEEDDVNEAL 635 (721)
T ss_pred HHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHH--HHHhhhc-cccchhhHHHHH
Confidence 7776554221 122224678888888763322 2222211 246777776654
No 384
>PRK12338 hypothetical protein; Provisional
Probab=96.52 E-value=0.002 Score=66.28 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=26.9
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeE
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFI 100 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i 100 (464)
|.-|++.|+||||||++|+.||+.+|++.+
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 456999999999999999999999998754
No 385
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.50 E-value=0.0017 Score=59.93 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=22.8
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAP 98 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~ 98 (464)
-++|+||+|||||+|++.|++.....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~ 28 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNL 28 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccc
Confidence 38999999999999999999976543
No 386
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=96.50 E-value=0.0021 Score=65.60 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=31.3
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCce
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKF 107 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~ 107 (464)
+-|++.||||||||.||-.||+. +..+|.+|.-.+
T Consensus 5 ~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~Qv 39 (300)
T PRK14729 5 KIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQV 39 (300)
T ss_pred cEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHH
Confidence 34999999999999999999999 678999988776
No 387
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.50 E-value=0.0022 Score=60.54 Aligned_cols=23 Identities=39% Similarity=0.391 Sum_probs=21.7
Q ss_pred eEEEecCCCchHHHHHHHHHHhC
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
|.+.|||||||||+|+.|+..++
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999999996
No 388
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.49 E-value=0.057 Score=54.01 Aligned_cols=52 Identities=23% Similarity=0.241 Sum_probs=37.2
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhh
Q psy2406 344 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 405 (464)
Q Consensus 344 PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~ 405 (464)
.+|--|++..|++.|++.++....+. ..++ .- -.-.=-++++++.+|+...-
T Consensus 185 ~e~~~R~~ir~~l~P~~~~~t~~yl~----~~Le---~a---~~~~~l~~~~a~~~i~~~sq 236 (269)
T COG3267 185 RELEQRIDIRIELPPLTEAETGLYLR----HRLE---GA---GLPEPLFSDDALLLIHEASQ 236 (269)
T ss_pred HhhhheEEEEEecCCcChHHHHHHHH----HHHh---cc---CCCcccCChhHHHHHHHHhc
Confidence 36779999989999999998777763 2222 11 12233579999999998874
No 389
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.48 E-value=0.013 Score=66.28 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=28.2
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCC--CeEEeecCcee
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNA--PFIKIEATKFT 108 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~--~~i~ld~s~~~ 108 (464)
.+.++|++|||||||+|.|+..+.- =-+.+|+-++.
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~ 538 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLN 538 (709)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHH
Confidence 3999999999999999999987632 26666665553
No 390
>PRK13975 thymidylate kinase; Provisional
Probab=96.48 E-value=0.003 Score=59.07 Aligned_cols=27 Identities=33% Similarity=0.133 Sum_probs=24.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAP 98 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~ 98 (464)
+-|.|.||+||||||+|+.||+.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 458999999999999999999999864
No 391
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=96.46 E-value=0.0027 Score=60.24 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=27.1
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
..|.++|++|||||++++.|++ +|++++..|
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D 33 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDAD 33 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEec
Confidence 3589999999999999999998 898877555
No 392
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.46 E-value=0.0076 Score=63.33 Aligned_cols=26 Identities=23% Similarity=0.153 Sum_probs=22.9
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNA 97 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~ 97 (464)
..++++||||||||+|++.||+.+..
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45899999999999999999988743
No 393
>KOG0055|consensus
Probab=96.46 E-value=0.016 Score=68.27 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=31.8
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCC--eEEeecCcee
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAP--FIKIEATKFT 108 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~--~i~ld~s~~~ 108 (464)
+.+-|+||+||||||+...|=+.++.. .+.+|+.++.
T Consensus 1017 qTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik 1055 (1228)
T KOG0055|consen 1017 QTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIK 1055 (1228)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccc
Confidence 669999999999999999999988654 7888887774
No 394
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.46 E-value=0.011 Score=56.29 Aligned_cols=24 Identities=25% Similarity=0.124 Sum_probs=21.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
..+.+.||+|+|||||.+.|+..+
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 348899999999999999999865
No 395
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.018 Score=64.42 Aligned_cols=166 Identities=16% Similarity=0.178 Sum_probs=90.6
Q ss_pred HHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccc-cCceeeee------eeeecCce----eEeec
Q psy2406 262 IQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV-EGTTVNTK------YGIIKTDH----ILFIA 330 (464)
Q Consensus 262 ~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlL-EG~~v~~~------~~~i~Tsn----il~I~ 330 (464)
+...|+.+| ..+|+|||||.-++.. .|+.+|+.| +.....+- ...+.++- ..+|.
T Consensus 216 i~pGaVHkA-ngGVLiIdei~lL~~~-------------~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~ 281 (647)
T COG1067 216 VKPGAVHKA-NGGVLIIDEIGLLAQP-------------LQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLIL 281 (647)
T ss_pred ccCcccccc-cCcEEEEEhhhhhCcH-------------HHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEe
Confidence 335577888 8999999999999754 455666665 43333221 11222222 23455
Q ss_pred cCCccc-cCCCCCchhhhccCCeEEEcCCC---CHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhc
Q psy2406 331 SGAFHL-AKPSDLIPELQGRFPIRVELDSL---SISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 406 (464)
Q Consensus 331 ag~f~~-~~p~~f~PEfl~R~d~iV~f~~L---t~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~ 406 (464)
.|+... ..-....|.|+.=+...+.|+.. +++...+.+ ..+.+.+..++--.+++.+|+..|...+-+
T Consensus 282 ~Gn~~~l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~--------~~~~q~v~~d~~ip~~~~~Av~~li~~a~R 353 (647)
T COG1067 282 AGNREDLEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLV--------QFYVQELARDGNIPHLDKDAVEELIREAAR 353 (647)
T ss_pred eCCHHHHHhhcccCHHHHhhcceEEEEcCCCCCChHHHHHHH--------HHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 553211 11223455666555555677654 444544443 344455555644468999999999888865
Q ss_pred cccCCCccCh--hHHHHHHHHHHHHHhcccCCCceeecHHHHHhHhCC
Q psy2406 407 INERTENIGA--RRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 407 ~~~~~~~~GA--R~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~~~ 452 (464)
.-.+...+-. |.|.+++.. ...+.... +.-.|++++|++++..
T Consensus 354 ~Ag~~~~Ltl~~rdl~~lv~~--A~~ia~~~-~~~~I~ae~Ve~a~~~ 398 (647)
T COG1067 354 RAGDQNKLTLRLRDLGNLVRE--AGDIAVSE-GRKLITAEDVEEALQK 398 (647)
T ss_pred hccccceeccCHHHHHHHHHH--hhHHHhcC-CcccCcHHHHHHHHHh
Confidence 4222233333 333344431 11111122 2246999999988765
No 396
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.43 E-value=0.0062 Score=56.09 Aligned_cols=31 Identities=16% Similarity=0.086 Sum_probs=24.3
Q ss_pred eEEEecCCCchHHHHHHHHHHh---CCCeEEeec
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLS---NAPFIKIEA 104 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~ 104 (464)
+|+.||||||||+||..++... |.+.+-++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 7999999999999999887654 556555543
No 397
>PF13245 AAA_19: Part of AAA domain
Probab=96.41 E-value=0.0048 Score=50.33 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=17.5
Q ss_pred eEEEecCCCchH-HHHHHHHHHh
Q psy2406 74 MVIKVLLLVGKT-EIARRLAKLS 95 (464)
Q Consensus 74 iLl~GP~G~GKT-~LAr~lA~~l 95 (464)
+++.|||||||| +++..++..+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 566999999999 6666666666
No 398
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.40 E-value=0.0026 Score=60.86 Aligned_cols=25 Identities=24% Similarity=0.040 Sum_probs=21.9
Q ss_pred CcceEEEecCCCchHHHHHHHHHHh
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
|+-++|+||+||||||.+-.||..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 5679999999999999888888665
No 399
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.39 E-value=0.0027 Score=59.86 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=22.9
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
.-++++||||||||+|++.|+..+.
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4599999999999999999999875
No 400
>PRK00023 cmk cytidylate kinase; Provisional
Probab=96.38 E-value=0.0026 Score=62.09 Aligned_cols=30 Identities=23% Similarity=0.224 Sum_probs=27.0
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEE
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIK 101 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ 101 (464)
..|.+.||+|||||++|+.||+.+|.+++.
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~~~~~~ 34 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLGFHYLD 34 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 458999999999999999999999987763
No 401
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.37 E-value=0.025 Score=62.27 Aligned_cols=35 Identities=11% Similarity=0.076 Sum_probs=26.9
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCC--eEEeecCc
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAP--FIKIEATK 106 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~--~i~ld~s~ 106 (464)
..+.+.||+|+|||||++.|+...... -+.+|+.+
T Consensus 367 ~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~ 403 (574)
T PRK11160 367 EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQP 403 (574)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 569999999999999999999887322 34555443
No 402
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=96.35 E-value=0.0071 Score=62.92 Aligned_cols=34 Identities=21% Similarity=0.033 Sum_probs=25.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCC--CeEEeecC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNA--PFIKIEAT 105 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~--~~i~ld~s 105 (464)
.-+.|+||+|||||||.|+||..... =-+.+++.
T Consensus 31 e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~ 66 (353)
T TIGR03265 31 EFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGR 66 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCE
Confidence 34899999999999999999987531 14445543
No 403
>KOG0481|consensus
Probab=96.35 E-value=0.0027 Score=68.54 Aligned_cols=84 Identities=18% Similarity=0.260 Sum_probs=48.6
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeee-eee--eecCceeEeeccCCcc-----ccC-C---
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYG--IIKTDHILFIASGAFH-----LAK-P--- 339 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~-~~~--~i~Tsnil~I~ag~f~-----~~~-p--- 339 (464)
.++||+|||+||+-..-. -++-..||-.+++. +.| .+..+..-+++|.+-- ..+ |
T Consensus 428 DgGVvCIDEFDKMre~DR-------------VAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dN 494 (729)
T KOG0481|consen 428 DGGVVCIDEFDKMREDDR-------------VAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDN 494 (729)
T ss_pred cCCEEEeehhhccCchhh-------------hHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccc
Confidence 789999999999854311 13445555444443 222 2233444444443211 111 2
Q ss_pred CCCchhhhccCCeEEEcCCCCHHHHHHHH
Q psy2406 340 SDLIPELQGRFPIRVELDSLSISDFTRIM 368 (464)
Q Consensus 340 ~~f~PEfl~R~d~iV~f~~Lt~~el~~Il 368 (464)
-+|-|..|+|||.|+.++.--.++....+
T Consensus 495 IDf~~TILSRFDmIFIVKD~h~~~~D~~l 523 (729)
T KOG0481|consen 495 IDFMPTILSRFDMIFIVKDEHDEERDITL 523 (729)
T ss_pred cchhhhHhhhccEEEEEeccCcchhhhHH
Confidence 26999999999999988876655444333
No 404
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.33 E-value=0.0031 Score=60.15 Aligned_cols=24 Identities=25% Similarity=0.095 Sum_probs=22.0
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.+.||+|||||||+++|+..++
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 378999999999999999999886
No 405
>PRK10536 hypothetical protein; Provisional
Probab=96.32 E-value=0.0075 Score=60.42 Aligned_cols=35 Identities=17% Similarity=-0.043 Sum_probs=25.8
Q ss_pred ceEEEecCCCchHHHHHHHHHH-h-C--CCeEEeecCce
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKL-S-N--APFIKIEATKF 107 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~-l-~--~~~i~ld~s~~ 107 (464)
.+++.||+|||||+||.++|.. + + +..+.+..+.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v 114 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVL 114 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCC
Confidence 5999999999999999999974 3 2 34444444444
No 406
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.32 E-value=0.0039 Score=58.39 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=27.8
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
.+++.||||+|||++|..++..++.+.+.+..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat 34 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIAT 34 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcC
Confidence 48999999999999999999998877665544
No 407
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.32 E-value=0.0079 Score=56.08 Aligned_cols=37 Identities=19% Similarity=0.116 Sum_probs=28.6
Q ss_pred CcceEEEecCCCchHHHHHHHHHHh---CCCeEEeecCce
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEATKF 107 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s~~ 107 (464)
|.-+++.|+||+|||++|+.|+..+ +...+.+++..+
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~ 57 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence 3559999999999999999999887 344555555433
No 408
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.31 E-value=0.0031 Score=59.81 Aligned_cols=25 Identities=20% Similarity=0.113 Sum_probs=22.3
Q ss_pred CcceEEEecCCCchHHHHHHHHHHh
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
|+-++|+||||||||+|++.|.+..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4559999999999999999999875
No 409
>KOG1808|consensus
Probab=96.30 E-value=0.0042 Score=75.58 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=32.8
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEeecCcee
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFT 108 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~ 108 (464)
.+||-||+|||||.+.+-+|+.+|-.+++++--+.+
T Consensus 442 pillqG~tssGKtsii~~la~~~g~~~vrinnheht 477 (1856)
T KOG1808|consen 442 PILLQGPTSSGKTSIIKELARATGKNIVRINNHEHT 477 (1856)
T ss_pred CeEEecCcCcCchhHHHHHHHHhccCceehhccccc
Confidence 499999999999999999999999999999876554
No 410
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.29 E-value=0.016 Score=58.23 Aligned_cols=24 Identities=17% Similarity=0.041 Sum_probs=21.8
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
..+.+.||+|+|||||.+.|+..+
T Consensus 33 e~v~i~G~nGsGKSTLl~~l~Gl~ 56 (288)
T PRK13643 33 SYTALIGHTGSGKSTLLQHLNGLL 56 (288)
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 459999999999999999999875
No 411
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.29 E-value=0.0032 Score=58.90 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.2
Q ss_pred ceEEEecCCCchHHHHHHHHHHh---CCCe
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS---NAPF 99 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l---~~~~ 99 (464)
+|++.|+||+||||+.+.+++.+ ++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 48999999999999999999998 6664
No 412
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.28 E-value=0.0043 Score=58.26 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=26.5
Q ss_pred eEEEecCCCchHHHHHHHHHHhC---CCeEEeecCce
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSN---APFIKIEATKF 107 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~---~~~i~ld~s~~ 107 (464)
|.+.|+||||||+||+.|++.++ .+...++...|
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf 38 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDY 38 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhc
Confidence 68999999999999999999973 44455544444
No 413
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=96.24 E-value=0.0087 Score=62.87 Aligned_cols=24 Identities=21% Similarity=0.115 Sum_probs=21.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.-+.|.||+|||||||.|+||...
T Consensus 46 e~~~llGpsGsGKSTLLr~IaGl~ 69 (377)
T PRK11607 46 EIFALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 347899999999999999999775
No 414
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.24 E-value=0.0041 Score=58.99 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=30.9
Q ss_pred CCCcceEEEecCCCchHHHHHHHHHHh-CCCeEEeecCcee
Q psy2406 69 NVILDMVIKVLLLVGKTEIARRLAKLS-NAPFIKIEATKFT 108 (464)
Q Consensus 69 ~~p~~iLl~GP~G~GKT~LAr~lA~~l-~~~~i~ld~s~~~ 108 (464)
..|.-+++.||||+|||+++..+...+ +..++.+|+-.+.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r 53 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR 53 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH
Confidence 356779999999999999999999998 6778888887764
No 415
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.23 E-value=0.0036 Score=55.91 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=25.2
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCce
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKF 107 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~ 107 (464)
.-|+|.|+-|+|||+++|.+|+.+|..- .+..++|
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~lg~~~-~V~SPTF 50 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARALGIDE-EVTSPTF 50 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTT--S-----TTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCCC-CcCCCCe
Confidence 3499999999999999999999998865 3333344
No 416
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.22 E-value=0.023 Score=60.17 Aligned_cols=30 Identities=30% Similarity=0.158 Sum_probs=24.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
-++++||.+||||++.+.+.+...-+++-+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~ 68 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYI 68 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEE
Confidence 599999999999999998888875543433
No 417
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.21 E-value=0.0058 Score=62.14 Aligned_cols=65 Identities=17% Similarity=0.019 Sum_probs=41.7
Q ss_pred hhhhhccCchhHhhhhhhcchhHHHHhhhhhcccccccCCCCCCccccccCCCcceEEEecCCCchHHHHHHHHHHhC
Q psy2406 19 TNACENAPSANNLRNKFGIRKAILKASVYIDAPNTRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 19 ~~~~e~~~~~~~~l~~~~igq~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
++..+-.+-+..+|+-|+.........+..-+.. ... ..|--|-+.||+||||||+|+.|+..+.
T Consensus 23 ~~v~~iy~pl~~~~~~~~~~~~~~~~~~~~f~~~-----~~~--------~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 23 EEVATIYLPLSRLLNFYISSNLRRQAVLEQFLGT-----NGA--------KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhc-----ccC--------CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4445556666777777776655554444431111 111 1334488999999999999999988774
No 418
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.20 E-value=0.011 Score=61.59 Aligned_cols=23 Identities=26% Similarity=0.198 Sum_probs=21.0
Q ss_pred ceEEEecCCCchHHHHHHHHHHh
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
-+.|.||+|||||||.|+||...
T Consensus 32 ~~~llG~sGsGKSTLLr~iaGl~ 54 (356)
T PRK11650 32 FIVLVGPSGCGKSTLLRMVAGLE 54 (356)
T ss_pred EEEEECCCCCcHHHHHHHHHCCC
Confidence 37899999999999999999875
No 419
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.20 E-value=0.0059 Score=56.17 Aligned_cols=33 Identities=27% Similarity=0.280 Sum_probs=27.0
Q ss_pred eEEEecCCCchHHHHHHHHHHh---CCCeEEeecCc
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLS---NAPFIKIEATK 106 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s~ 106 (464)
+++.||||+|||++++.+|..+ |..+..+++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 7899999999999999999876 55666666643
No 420
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.18 E-value=0.029 Score=63.00 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=27.0
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCC--eEEeecCc
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAP--FIKIEATK 106 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~--~i~ld~s~ 106 (464)
..+.+.||+|+|||||++.|+..+... -+.+|+.+
T Consensus 492 ~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 528 (694)
T TIGR03375 492 EKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVD 528 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 569999999999999999999887422 45555433
No 421
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.16 E-value=0.0061 Score=56.22 Aligned_cols=30 Identities=20% Similarity=0.153 Sum_probs=25.1
Q ss_pred eEEEecCCCchHHHHHHHHHHh---CCCeEEee
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLS---NAPFIKIE 103 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld 103 (464)
|.|.||+||||||+++.|++.+ |..++.+.
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~ 35 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGYEVVLTR 35 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 7899999999999999999998 55555443
No 422
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=96.16 E-value=0.0063 Score=57.47 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=27.7
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCeEEeecC
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSNAPFIKIEAT 105 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s 105 (464)
|+|.|||-+|||++||+|...+..||+++..-
T Consensus 4 I~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D 35 (174)
T PF07931_consen 4 IILNGPSSSGKSSIARALQERLPEPWLHLSVD 35 (174)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHH
T ss_pred EEEeCCCCCCHHHHHHHHHHhCcCCeEEEecC
Confidence 89999999999999999999999999988653
No 423
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=96.16 E-value=0.025 Score=69.02 Aligned_cols=26 Identities=15% Similarity=0.069 Sum_probs=23.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNA 97 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~ 97 (464)
..+.++||+|||||||++.|++.+..
T Consensus 1195 ~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1195 KTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 56999999999999999999998864
No 424
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=96.14 E-value=0.011 Score=61.80 Aligned_cols=24 Identities=25% Similarity=0.127 Sum_probs=21.5
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
..+.|.||+|||||||.++||...
T Consensus 30 e~~~l~G~nGsGKSTLL~~iaGl~ 53 (369)
T PRK11000 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 348899999999999999999875
No 425
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.14 E-value=0.024 Score=56.42 Aligned_cols=24 Identities=25% Similarity=0.091 Sum_probs=21.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
..+.+.||+|+|||||.++|+..+
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 36 EYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999999875
No 426
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.13 E-value=0.0049 Score=57.78 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=26.5
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
|.++|++|||||++++.|++..+++++..|
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~~D 31 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVIDAD 31 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEeCC
Confidence 789999999999999999998778877554
No 427
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.13 E-value=0.0036 Score=57.40 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=20.4
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
+.++|+||+|||||+|+++|-..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 45999999999999999998764
No 428
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.12 E-value=0.0048 Score=66.40 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=29.7
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCC-eEEeec
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAP-FIKIEA 104 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~-~i~ld~ 104 (464)
.|.-|+++|+||||||++|..||..+|+. ++..|.
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~ 289 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDA 289 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhH
Confidence 46779999999999999999999999987 455543
No 429
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.11 E-value=0.0037 Score=64.38 Aligned_cols=39 Identities=21% Similarity=0.115 Sum_probs=33.0
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEV 110 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~ 110 (464)
+.++++|+||||||+|++.|+..++.+++.--+.++.+.
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~ 201 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEE 201 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHH
Confidence 679999999999999999999999999876665555443
No 430
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.11 E-value=0.0043 Score=58.17 Aligned_cols=22 Identities=18% Similarity=0.031 Sum_probs=16.2
Q ss_pred eEEEecCCCchHHHHHHHHHHh
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.++.||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999996555555544
No 431
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.10 E-value=0.023 Score=56.82 Aligned_cols=24 Identities=21% Similarity=-0.017 Sum_probs=21.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.-+.+.||+|+|||||.++|+..+
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~ 57 (279)
T PRK13650 34 EWLSIIGHNGSGKSTTVRLIDGLL 57 (279)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 448999999999999999999875
No 432
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=96.06 E-value=0.0049 Score=67.21 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=27.2
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEE
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIK 101 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ 101 (464)
.|..|.+.||+||||||+|+.||+.+|..++.
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d 314 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLD 314 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 44668899999999999999999999865553
No 433
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.06 E-value=0.01 Score=57.34 Aligned_cols=22 Identities=27% Similarity=0.123 Sum_probs=20.2
Q ss_pred cceEEEecCCCchHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAK 93 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~ 93 (464)
+.++|.||.|+|||++.|.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5699999999999999999984
No 434
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.06 E-value=0.005 Score=69.69 Aligned_cols=32 Identities=25% Similarity=0.294 Sum_probs=28.2
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
.|.+-||||||||++|+.||+.+|..++....
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~ 34 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGA 34 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeecCc
Confidence 48899999999999999999999988776643
No 435
>PRK06761 hypothetical protein; Provisional
Probab=96.05 E-value=0.0058 Score=61.94 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=27.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
-|++.|||||||||+++.|++.+....+.++.
T Consensus 5 lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 5 LIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence 48999999999999999999999876665554
No 436
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=96.05 E-value=0.021 Score=55.29 Aligned_cols=92 Identities=18% Similarity=0.276 Sum_probs=66.6
Q ss_pred CcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCCe
Q psy2406 273 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 352 (464)
Q Consensus 273 ~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d~ 352 (464)
.+.++||++|+++.. .+++||+.||. ...|++||..+ .++..+.|..+||+-.
T Consensus 55 ~~k~iI~~a~~l~~~-------------A~NaLLK~LEE----------Pp~~~~fiL~t----~~~~~llpTI~SRc~~ 107 (206)
T PRK08485 55 EEKIIVIAAPSYGIE-------------AQNALLKILEE----------PPKNICFIIVA----KSKNLLLPTIRSRLII 107 (206)
T ss_pred CcEEEEEchHhhCHH-------------HHHHHHHHhcC----------CCCCeEEEEEe----CChHhCchHHHhhhee
Confidence 345668999998754 56799999986 34566777765 3678899999999964
Q ss_pred ------------EEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhh
Q psy2406 353 ------------RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 405 (464)
Q Consensus 353 ------------iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~ 405 (464)
.+.|++|+.+++...++. +..+++ ...+++++.|+..+.
T Consensus 108 ~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~------------~~ke~~--~~~~ea~~lIa~la~ 158 (206)
T PRK08485 108 EKRKQKKPVKPLDLDLKKLDLKDIYEFLKE------------LEKENK--LSKEELKELIESLLK 158 (206)
T ss_pred ccccccccccccccccCCCCHHHHHHHHHH------------HHHccc--ccHHHHHHHHHHHHH
Confidence 367999999998887741 222333 556778888877764
No 437
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.05 E-value=0.012 Score=56.05 Aligned_cols=38 Identities=16% Similarity=0.046 Sum_probs=32.9
Q ss_pred CcceEEEecCCCchHHHHHHHHHHh---CCCeEEeecCcee
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEATKFT 108 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s~~~ 108 (464)
|..+.|.|.+|+||||+|.+|++.| |...+.+|+-.+-
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR 63 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR 63 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh
Confidence 4569999999999999999999887 8889999887663
No 438
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.04 E-value=0.021 Score=56.96 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=21.8
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
..+.|.||+|+|||+|.++|+..+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNGIY 55 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 458999999999999999999775
No 439
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.04 E-value=0.033 Score=61.75 Aligned_cols=24 Identities=33% Similarity=0.242 Sum_probs=22.1
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
..+|+.||+|||||+|-|+||...
T Consensus 420 ~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 420 ERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 569999999999999999999875
No 440
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.04 E-value=0.0068 Score=64.23 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=30.3
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCce
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKF 107 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~ 107 (464)
..|.+.|++|||||||+++||+.+|.+.+.-=+.++
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~ 255 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREY 255 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHH
Confidence 789999999999999999999999988765433333
No 441
>PRK05439 pantothenate kinase; Provisional
Probab=96.02 E-value=0.0083 Score=61.60 Aligned_cols=26 Identities=31% Similarity=0.241 Sum_probs=22.7
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhC
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
|--|.+.|||||||||+|+.|+..++
T Consensus 86 ~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 86 PFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34588999999999999999998774
No 442
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.01 E-value=0.028 Score=61.92 Aligned_cols=35 Identities=20% Similarity=0.185 Sum_probs=27.2
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCC--eEEeecCc
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAP--FIKIEATK 106 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~--~i~ld~s~ 106 (464)
..+.+.||+|+|||||++.|+..+... -+.+|+.+
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~ 398 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTD 398 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEE
Confidence 558999999999999999999887422 45565543
No 443
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=96.00 E-value=0.0063 Score=58.80 Aligned_cols=33 Identities=18% Similarity=0.131 Sum_probs=29.0
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
|..|-++|++|||||++++.+++.+|.+++..|
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD 38 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEKLNLNVVCAD 38 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHcCCeEEecc
Confidence 455999999999999999999999999977554
No 444
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.99 E-value=0.0079 Score=60.60 Aligned_cols=37 Identities=19% Similarity=-0.023 Sum_probs=28.0
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHh----C-CCeEEeecCc
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLS----N-APFIKIEATK 106 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l----~-~~~i~ld~s~ 106 (464)
.|..++|+||+||||||++..||..+ | ..+..+++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 35679999999999999999999765 3 4555555443
No 445
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.98 E-value=0.018 Score=57.55 Aligned_cols=25 Identities=16% Similarity=-0.104 Sum_probs=21.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
+.+++.||||+||||+.+++...+.
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhC
Confidence 3489999999999999999987764
No 446
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=95.97 E-value=0.013 Score=61.26 Aligned_cols=24 Identities=33% Similarity=0.231 Sum_probs=21.9
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.-+.|.||+|||||||.++|+...
T Consensus 20 ei~~l~G~sGsGKSTLLr~L~Gl~ 43 (363)
T TIGR01186 20 EIFVIMGLSGSGKSTTVRMLNRLI 43 (363)
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 458999999999999999999876
No 447
>PRK07667 uridine kinase; Provisional
Probab=95.93 E-value=0.0093 Score=56.49 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=26.8
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC---CCeEEeecCce
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN---APFIKIEATKF 107 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~---~~~i~ld~s~~ 107 (464)
-|.+.|+||+|||++|+.|+..++ .+...++...|
T Consensus 19 iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 19 ILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 388999999999999999999873 45444444443
No 448
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.92 E-value=0.034 Score=55.49 Aligned_cols=24 Identities=25% Similarity=0.016 Sum_probs=21.8
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
..+.+.||+|+|||||.++|+..+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (274)
T PRK13644 29 EYIGIIGKNGSGKSTLALHLNGLL 52 (274)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 459999999999999999999875
No 449
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.91 E-value=0.01 Score=55.37 Aligned_cols=28 Identities=25% Similarity=0.229 Sum_probs=24.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCe
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPF 99 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~ 99 (464)
+-++|+||+|+|||+|++.|++...-.|
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~~~~ 30 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFPDKF 30 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHSTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhccccc
Confidence 4599999999999999999999886554
No 450
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.88 E-value=0.027 Score=56.66 Aligned_cols=24 Identities=17% Similarity=-0.003 Sum_probs=21.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
..+.+.||+|+|||||.++|+..+
T Consensus 34 e~~~i~G~nGaGKSTLl~~l~Gl~ 57 (287)
T PRK13637 34 EFVGLIGHTGSGKSTLIQHLNGLL 57 (287)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 359999999999999999999775
No 451
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.88 E-value=0.039 Score=55.54 Aligned_cols=24 Identities=21% Similarity=0.088 Sum_probs=21.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
..+.+.||+|+|||||.+.|+..+
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~ 57 (290)
T PRK13634 34 SYVAIIGHTGSGKSTLLQHLNGLL 57 (290)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 458999999999999999999775
No 452
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.87 E-value=0.0062 Score=58.00 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=21.8
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+++.|||||||||+.++++..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 489999999999999999998875
No 453
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.85 E-value=0.024 Score=56.59 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=21.5
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
..+.|.||+|+|||||.++|+..+
T Consensus 31 e~~~i~G~NGsGKSTLl~~l~Gl~ 54 (277)
T PRK13652 31 SRIAVIGPNGAGKSTLFRHFNGIL 54 (277)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 348899999999999999999875
No 454
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.85 E-value=0.013 Score=59.54 Aligned_cols=38 Identities=16% Similarity=0.090 Sum_probs=30.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHh--CCCeEEeecCceee
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS--NAPFIKIEATKFTE 109 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l--~~~~i~ld~s~~~~ 109 (464)
+---++|++|+|||+|.+++|... ..-.|.+++..+..
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~D 64 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVD 64 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeec
Confidence 446799999999999999999776 44478888777754
No 455
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.81 E-value=0.013 Score=54.81 Aligned_cols=24 Identities=21% Similarity=0.090 Sum_probs=21.5
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
+.++|+||+|||||+|...|....
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 569999999999999999998765
No 456
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.81 E-value=0.0094 Score=63.89 Aligned_cols=38 Identities=21% Similarity=0.162 Sum_probs=30.7
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHh---CCCeEEeecCce
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEATKF 107 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s~~ 107 (464)
.|..++|+||+|+|||+++..||..+ |.++.-+++..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 57889999999999999999999776 556666666444
No 457
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=95.80 E-value=0.0057 Score=56.54 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=25.1
Q ss_pred EecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 77 KVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 77 ~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
.|.+|||||+++++||..+|++|+.-|-
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDd 28 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDD 28 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccc
Confidence 4899999999999999999999986553
No 458
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.011 Score=64.72 Aligned_cols=46 Identities=11% Similarity=0.136 Sum_probs=31.9
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC--CCeEEeecCcee---------eccccccCh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN--APFIKIEATKFT---------EVGYVGRDV 117 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~--~~~i~ld~s~~~---------~~gyvG~d~ 117 (464)
+.+-++||+|||||||...|+..+. .--+.+|.-+.. ...|+++++
T Consensus 348 ~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p 404 (559)
T COG4988 348 QLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNP 404 (559)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCC
Confidence 5589999999999999999998873 224444433332 235777663
No 459
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.77 E-value=0.016 Score=58.29 Aligned_cols=37 Identities=16% Similarity=0.046 Sum_probs=28.6
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHh---CCCeEEeecCc
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEATK 106 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s~ 106 (464)
.|+.++|+||||+||||++..||..+ |..+.-+++-.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 45779999999999999999999766 55555555543
No 460
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.76 E-value=0.011 Score=57.38 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=20.8
Q ss_pred eEEEecCCCchHHHHHHHHHHhC
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
+-+.||+|+||||+|+.|+..+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 56889999999999999999884
No 461
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.75 E-value=0.034 Score=57.80 Aligned_cols=35 Identities=23% Similarity=0.186 Sum_probs=28.0
Q ss_pred eEEEecCCCchHHHHHHHHHHh----CCCeEEeecCcee
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLS----NAPFIKIEATKFT 108 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l----~~~~i~ld~s~~~ 108 (464)
+.|.|+||+||||+++.|+..+ |.++..++.-.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence 5799999999999999999665 4566666666654
No 462
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.74 E-value=0.0078 Score=58.44 Aligned_cols=25 Identities=24% Similarity=0.061 Sum_probs=22.5
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
.-+.+.||+|+|||||++.|+..+.
T Consensus 34 ~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 34 TIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4588999999999999999998874
No 463
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.74 E-value=0.0072 Score=56.79 Aligned_cols=25 Identities=20% Similarity=0.126 Sum_probs=22.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
..+++.||+|+||||+.++|+....
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 5699999999999999999998763
No 464
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=95.71 E-value=0.0085 Score=56.04 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.8
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCeE
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSNAPFI 100 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~~~~i 100 (464)
|.+.|++||||||+++.|++.+++.++
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~~~~~~ 28 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHLGYEVV 28 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCccc
Confidence 789999999999999999998876544
No 465
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.69 E-value=0.0088 Score=50.85 Aligned_cols=22 Identities=36% Similarity=0.299 Sum_probs=20.3
Q ss_pred eEEEecCCCchHHHHHHHHHHh
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l 95 (464)
|+++|++|||||+|.+.++...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999999764
No 466
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=95.67 E-value=0.055 Score=60.98 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=27.8
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCC--eEEeecCce
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAP--FIKIEATKF 107 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~--~i~ld~s~~ 107 (464)
..+.+.||+|+|||||++.|+..+... -+.+|+.++
T Consensus 501 ~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i 538 (708)
T TIGR01193 501 SKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSL 538 (708)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEH
Confidence 569999999999999999999886422 455665433
No 467
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.65 E-value=0.011 Score=60.24 Aligned_cols=24 Identities=21% Similarity=0.090 Sum_probs=22.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
+++++.||||+||||++++|+...
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999886
No 468
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=95.64 E-value=0.058 Score=59.15 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=27.8
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCC--eEEeecCce
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAP--FIKIEATKF 107 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~--~i~ld~s~~ 107 (464)
..+.++||+|+||||+++.|++.+... -|.+|+-++
T Consensus 356 e~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI 393 (567)
T COG1132 356 EKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDI 393 (567)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEeh
Confidence 447799999999999999999998652 344465444
No 469
>PTZ00301 uridine kinase; Provisional
Probab=95.61 E-value=0.0087 Score=58.00 Aligned_cols=22 Identities=14% Similarity=0.077 Sum_probs=20.4
Q ss_pred eEEEecCCCchHHHHHHHHHHh
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l 95 (464)
|.+.||||+||||||+.|++.+
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHH
Confidence 7889999999999999999876
No 470
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.56 E-value=0.013 Score=55.93 Aligned_cols=33 Identities=21% Similarity=0.167 Sum_probs=26.1
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEeecCc
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATK 106 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~ 106 (464)
-++|.||+|+|||||+++|-+.. .-.+.+++++
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TT 38 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATT 38 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc-CeEEEEEecc
Confidence 38899999999999999999888 3344555544
No 471
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.48 E-value=0.017 Score=59.48 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=27.5
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHh---CCCeEEeec
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEA 104 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~ 104 (464)
.|.-++|+||+|+||||++..||..+ |..+.-+++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 45679999999999999999999876 444444444
No 472
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.48 E-value=0.016 Score=61.58 Aligned_cols=26 Identities=19% Similarity=0.064 Sum_probs=23.5
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHh
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.|..|+|+||+||||||++..||..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 46789999999999999999999776
No 473
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.48 E-value=0.029 Score=60.76 Aligned_cols=28 Identities=18% Similarity=0.032 Sum_probs=24.5
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCeEE
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSNAPFIK 101 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~~~~i~ 101 (464)
+|+.||||+|||+.-.++.+.++.+...
T Consensus 261 iLvTGPTGSGKTTTLY~~L~~ln~~~~n 288 (500)
T COG2804 261 ILVTGPTGSGKTTTLYAALSELNTPERN 288 (500)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCce
Confidence 8889999999999999999998776554
No 474
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.47 E-value=0.0087 Score=62.26 Aligned_cols=25 Identities=24% Similarity=0.209 Sum_probs=23.1
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
++|++.||||+||||+.++|+....
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccC
Confidence 7899999999999999999998764
No 475
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=95.47 E-value=0.013 Score=56.29 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=26.0
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
-|-+.|++|||||++++.|+. +|++++..|
T Consensus 7 ~igitG~igsGKSt~~~~l~~-~g~~v~d~D 36 (208)
T PRK14731 7 LVGVTGGIGSGKSTVCRFLAE-MGCELFEAD 36 (208)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCeEEecc
Confidence 477999999999999999996 888887654
No 476
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.46 E-value=0.017 Score=54.77 Aligned_cols=34 Identities=24% Similarity=0.056 Sum_probs=26.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHh---CCCeEEeecC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEAT 105 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s 105 (464)
.-++++||||||||++|..+|... |.+.+-++..
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 348999999999999999998654 5566666653
No 477
>PF13479 AAA_24: AAA domain
Probab=95.46 E-value=0.0096 Score=57.34 Aligned_cols=31 Identities=32% Similarity=0.363 Sum_probs=24.0
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCC-eEEeecC
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAP-FIKIEAT 105 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~-~i~ld~s 105 (464)
|-.+++|||||+|||++|..+ +-| |+.++..
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g 34 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENG 34 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCC
Confidence 346999999999999999887 333 6666655
No 478
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.42 E-value=0.021 Score=61.09 Aligned_cols=38 Identities=21% Similarity=0.044 Sum_probs=30.8
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHh---CCCeEEeecCce
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEATKF 107 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s~~ 107 (464)
.|.-|+|+||+|+||||++..||..+ |..+.-+++-.|
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~ 139 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF 139 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 46779999999999999999999776 666666666544
No 479
>PRK10646 ADP-binding protein; Provisional
Probab=95.42 E-value=0.014 Score=54.15 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=28.6
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEeecCcee
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFT 108 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~ 108 (464)
-++|.|+-|+|||+++|.+|+.+|++-. +..++|+
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~Lg~~~~-V~SPTFt 64 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQALGHQGN-VKSPTYT 64 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCCC-CCCCCEe
Confidence 4899999999999999999999997632 4555554
No 480
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.41 E-value=0.015 Score=56.78 Aligned_cols=25 Identities=24% Similarity=0.149 Sum_probs=23.5
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCC
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSNAP 98 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~~~ 98 (464)
|.+.|++||||||+|+.|+..++.+
T Consensus 11 IgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 7788999999999999999999977
No 481
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.40 E-value=0.026 Score=56.84 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=21.6
Q ss_pred eEEEecCCCchHHHHHHHHHHh---CCCeEEee
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLS---NAPFIKIE 103 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld 103 (464)
|+++|.||||||++|+.|++.+ +..++.++
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 8999999999999999999876 45555554
No 482
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.40 E-value=0.035 Score=53.37 Aligned_cols=33 Identities=15% Similarity=0.039 Sum_probs=24.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHh----CCCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS----NAPFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l----~~~~i~ld~ 104 (464)
..+|+.||||+|||+||..++... |-+.+-++.
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 559999999999999999877433 777665554
No 483
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.39 E-value=0.012 Score=58.16 Aligned_cols=25 Identities=20% Similarity=0.081 Sum_probs=23.1
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
+++++.|||||||||+.+++...+.
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred eEEEEECCCccccchHHHHHhhhcc
Confidence 7799999999999999999998873
No 484
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.39 E-value=0.012 Score=62.01 Aligned_cols=24 Identities=25% Similarity=0.087 Sum_probs=21.8
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
..++|+|||||||||++..||..+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 679999999999999999999764
No 485
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.38 E-value=0.037 Score=60.79 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=31.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRD 116 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d 116 (464)
..|-++||.|+|||||.|.|+..++-.-=.+....-...||..++
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~ 393 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQH 393 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEeh
Confidence 669999999999999999998887543222222222456776554
No 486
>KOG1968|consensus
Probab=95.38 E-value=0.073 Score=61.53 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=32.4
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCeEEeecCcee
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFT 108 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~ 108 (464)
++++||||+|||+.|...|+.+|..++..|++..-
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~R 394 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVR 394 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccc
Confidence 69999999999999999999999999999987653
No 487
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.38 E-value=0.012 Score=54.91 Aligned_cols=25 Identities=36% Similarity=0.242 Sum_probs=22.8
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNA 97 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~ 97 (464)
-|.+.|++||||||+++.|++.++.
T Consensus 5 ~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 5 FIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999999854
No 488
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=95.35 E-value=0.028 Score=50.73 Aligned_cols=32 Identities=19% Similarity=0.079 Sum_probs=25.9
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
+++||.+|||+|||.++-.++..+..+++.+-
T Consensus 26 ~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~ 57 (184)
T PF04851_consen 26 RRVLLNAPTGSGKTIIALALILELARKVLIVA 57 (184)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHCEEEEEE
T ss_pred CCEEEEECCCCCcChhhhhhhhccccceeEec
Confidence 67999999999999999987766655666554
No 489
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.34 E-value=0.011 Score=65.27 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=28.4
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCC----CeEEeecC
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNA----PFIKIEAT 105 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~----~~i~ld~s 105 (464)
|..|+|+|+|||||||+|+.||+.++. +++.+|..
T Consensus 392 g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D 430 (568)
T PRK05537 392 GFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD 430 (568)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCc
Confidence 356999999999999999999999875 35555553
No 490
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=95.32 E-value=0.038 Score=62.20 Aligned_cols=36 Identities=19% Similarity=0.028 Sum_probs=27.8
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCC--eEEeecCce
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAP--FIKIEATKF 107 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~--~i~ld~s~~ 107 (464)
..+.+.||+|+|||||++.|+..+.-. -+.+|+.++
T Consensus 506 e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i 543 (710)
T TIGR03796 506 QRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPR 543 (710)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeH
Confidence 569999999999999999999887322 555655443
No 491
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.32 E-value=0.012 Score=51.41 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=19.3
Q ss_pred cceEEEecCCCchHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLA 92 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA 92 (464)
..++|.||+|||||+|++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 459999999999999999987
No 492
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=95.31 E-value=0.022 Score=60.44 Aligned_cols=23 Identities=17% Similarity=-0.021 Sum_probs=21.1
Q ss_pred ceEEEecCCCchHHHHHHHHHHh
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
-+.|.||+|+|||||.|+|+..+
T Consensus 31 iv~liGpNGaGKSTLLk~LaGll 53 (402)
T PRK09536 31 LVGLVGPNGAGKTTLLRAINGTL 53 (402)
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 37899999999999999999876
No 493
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=95.30 E-value=0.092 Score=59.12 Aligned_cols=36 Identities=14% Similarity=0.106 Sum_probs=27.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCC--CeEEeecCce
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNA--PFIKIEATKF 107 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~--~~i~ld~s~~ 107 (464)
..+.+.||+|+|||||++.|+..... --+.+|+.++
T Consensus 484 ~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i 521 (694)
T TIGR01846 484 EFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDL 521 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeh
Confidence 46999999999999999999988732 2455555443
No 494
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.30 E-value=0.018 Score=53.97 Aligned_cols=24 Identities=21% Similarity=0.104 Sum_probs=21.9
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
+-++|+||+||||+++++.|++..
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcC
Confidence 349999999999999999999886
No 495
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.29 E-value=0.045 Score=53.03 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.8
Q ss_pred cceEEEecCCCchHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAK 93 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~ 93 (464)
.-+++.||.|+|||++.|.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4489999999999999999974
No 496
>PF12846 AAA_10: AAA-like domain
Probab=95.29 E-value=0.02 Score=56.07 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=27.1
Q ss_pred cceEEEecCCCchHHHHHHHHHHh---CCCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~ 104 (464)
.+++++|+||+|||++++.+...+ |..++.+|.
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~ 37 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDP 37 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 469999999999999999998755 666666655
No 497
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.28 E-value=0.015 Score=48.96 Aligned_cols=25 Identities=20% Similarity=-0.091 Sum_probs=21.5
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
+++++.||||+|||+.+-.++..+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHH
Confidence 3689999999999999888887763
No 498
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.27 E-value=0.07 Score=55.10 Aligned_cols=83 Identities=19% Similarity=0.173 Sum_probs=46.0
Q ss_pred HHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhcccc--Cceeeeee------------eee-cCcee
Q psy2406 262 IQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVE--GTTVNTKY------------GII-KTDHI 326 (464)
Q Consensus 262 ~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLE--G~~v~~~~------------~~i-~Tsni 326 (464)
-.--|.+-|..+.|+|+||--++... .-+...|+.||++=. ..++-|-. +.+ ....+
T Consensus 172 RVGLARAla~~~~IlLMDEaFSALDP--------LIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~i 243 (386)
T COG4175 172 RVGLARALANDPDILLMDEAFSALDP--------LIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEI 243 (386)
T ss_pred HHHHHHHHccCCCEEEecCchhhcCh--------HHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeE
Confidence 33445566667999999998877521 234468889988754 34444311 122 23444
Q ss_pred EeeccCCccccCCC-CCchhhhccCCe
Q psy2406 327 LFIASGAFHLAKPS-DLIPELQGRFPI 352 (464)
Q Consensus 327 l~I~ag~f~~~~p~-~f~PEfl~R~d~ 352 (464)
+-++|+..-..+|. ++-..|...+|.
T Consensus 244 vQ~Gtp~eIl~~PAndYV~~Fv~~v~~ 270 (386)
T COG4175 244 VQVGTPEEILLNPANDYVRDFVRNVDR 270 (386)
T ss_pred EEeCCHHHHHcCccHHHHHHHHhcCCh
Confidence 44444422223443 455666666554
No 499
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=95.27 E-value=0.015 Score=63.83 Aligned_cols=35 Identities=6% Similarity=0.071 Sum_probs=28.8
Q ss_pred CCCcceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 69 NVILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 69 ~~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
..|.-++++|+||+|||++|+.++...|...+..|
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D 401 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNAD 401 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcH
Confidence 35567999999999999999999998876655444
No 500
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=95.24 E-value=0.037 Score=60.39 Aligned_cols=34 Identities=9% Similarity=0.097 Sum_probs=26.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCC--CeEEeecC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNA--PFIKIEAT 105 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~--~~i~ld~s 105 (464)
..+.+.||+|+|||||.+.|+..+.. --+.++..
T Consensus 359 ~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~ 394 (571)
T TIGR02203 359 ETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGH 394 (571)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCE
Confidence 55899999999999999999988732 24555543
Done!