Query psy2406
Match_columns 464
No_of_seqs 312 out of 3176
Neff 5.8
Searched_HMMs 29240
Date Sat Aug 17 00:10:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2406.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2406hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g41_A Heat shock protein HSLU 100.0 3E-65 1E-69 536.5 19.8 427 28-464 9-444 (444)
2 3hws_A ATP-dependent CLP prote 100.0 4.3E-36 1.5E-40 304.7 13.9 285 28-458 9-354 (363)
3 1ofh_A ATP-dependent HSL prote 100.0 4.5E-34 1.5E-38 279.1 21.5 297 28-464 9-310 (310)
4 1um8_A ATP-dependent CLP prote 100.0 1E-32 3.5E-37 280.9 16.0 293 26-459 13-371 (376)
5 1r6b_X CLPA protein; AAA+, N-t 100.0 1.1E-31 3.7E-36 296.9 18.8 262 9-431 433-716 (758)
6 3pxi_A Negative regulator of g 100.0 1.7E-29 5.8E-34 279.9 18.7 250 9-433 466-727 (758)
7 1qvr_A CLPB protein; coiled co 100.0 2E-29 6.9E-34 283.1 17.2 263 9-432 533-821 (854)
8 4fcw_A Chaperone protein CLPB; 99.9 3E-27 1E-31 232.1 18.1 253 18-431 1-279 (311)
9 4b4t_J 26S protease regulatory 99.9 5E-25 1.7E-29 228.7 17.5 207 70-454 181-390 (405)
10 4b4t_H 26S protease regulatory 99.9 6.6E-24 2.3E-28 223.4 17.3 216 70-463 242-464 (467)
11 4b4t_M 26S protease regulatory 99.9 8.5E-24 2.9E-28 221.6 18.1 207 70-454 214-423 (434)
12 4b4t_I 26S protease regulatory 99.9 5.2E-24 1.8E-28 222.4 16.3 205 70-453 215-423 (437)
13 4b4t_L 26S protease subunit RP 99.9 8.4E-24 2.9E-28 221.8 16.6 208 70-455 214-424 (437)
14 4b4t_K 26S protease regulatory 99.9 2.2E-23 7.4E-28 218.2 16.9 206 70-454 205-415 (428)
15 3m6a_A ATP-dependent protease 99.9 4E-22 1.4E-26 214.0 17.9 164 272-458 175-346 (543)
16 3cf2_A TER ATPase, transitiona 99.9 2.3E-22 7.9E-27 224.4 8.9 218 70-462 510-755 (806)
17 3eie_A Vacuolar protein sortin 99.8 5.5E-21 1.9E-25 191.1 14.7 123 272-427 110-232 (322)
18 1xwi_A SKD1 protein; VPS4B, AA 99.8 9.4E-20 3.2E-24 183.0 21.2 125 272-429 105-229 (322)
19 2qp9_X Vacuolar protein sortin 99.8 2.1E-20 7.3E-25 190.1 15.8 127 272-431 143-269 (355)
20 3cf2_A TER ATPase, transitiona 99.8 1.7E-19 5.9E-24 201.3 16.7 180 70-426 237-418 (806)
21 3d8b_A Fidgetin-like protein 1 99.8 3.1E-19 1.1E-23 181.4 17.1 159 272-462 176-346 (357)
22 2zan_A Vacuolar protein sortin 99.8 6.7E-19 2.3E-23 184.3 20.0 125 272-429 227-351 (444)
23 3b9p_A CG5977-PA, isoform A; A 99.8 9E-19 3.1E-23 171.3 19.3 151 272-453 113-272 (297)
24 3t15_A Ribulose bisphosphate c 99.8 3.7E-20 1.3E-24 183.5 9.3 92 272-369 99-195 (293)
25 3vfd_A Spastin; ATPase, microt 99.8 1.1E-18 3.9E-23 178.6 18.8 149 272-452 207-364 (389)
26 3syl_A Protein CBBX; photosynt 99.8 2.9E-19 1E-23 175.2 13.3 132 272-430 130-262 (309)
27 3cf0_A Transitional endoplasmi 99.8 1.3E-19 4.5E-24 179.7 9.8 158 272-462 108-293 (301)
28 3pfi_A Holliday junction ATP-d 99.8 1E-17 3.4E-22 166.8 19.4 139 272-451 106-252 (338)
29 3pvs_A Replication-associated 99.8 8.9E-18 3E-22 176.5 19.4 143 272-458 106-249 (447)
30 1lv7_A FTSH; alpha/beta domain 99.8 2.4E-17 8.2E-22 158.4 18.4 146 272-454 104-253 (257)
31 3h4m_A Proteasome-activating n 99.8 1.3E-17 4.5E-22 161.9 16.1 148 272-454 110-259 (285)
32 2ce7_A Cell division protein F 99.7 1.1E-17 3.7E-22 177.3 15.6 146 272-454 108-257 (476)
33 3uk6_A RUVB-like 2; hexameric 99.7 5.7E-17 2E-21 162.7 19.3 141 273-454 190-331 (368)
34 2qz4_A Paraplegin; AAA+, SPG7, 99.7 2.4E-17 8.1E-22 157.4 15.4 146 272-452 98-248 (262)
35 2c9o_A RUVB-like 1; hexameric 99.7 6.6E-18 2.3E-22 177.0 12.3 142 273-454 296-438 (456)
36 3hu3_A Transitional endoplasmi 99.7 2.8E-17 9.6E-22 174.6 13.2 146 272-452 297-458 (489)
37 2r62_A Cell division protease 99.7 4.4E-18 1.5E-22 164.1 3.7 148 272-454 103-254 (268)
38 3te6_A Regulatory protein SIR3 99.7 9.5E-17 3.2E-21 162.1 10.9 152 272-455 132-317 (318)
39 3u61_B DNA polymerase accessor 99.7 2.3E-16 7.8E-21 156.3 13.0 114 272-427 105-220 (324)
40 1ypw_A Transitional endoplasmi 99.7 3.1E-18 1.1E-22 191.7 -0.8 86 272-369 570-658 (806)
41 2x8a_A Nuclear valosin-contain 99.7 5.5E-16 1.9E-20 152.5 15.2 151 272-453 103-264 (274)
42 1hqc_A RUVB; extended AAA-ATPa 99.7 1.6E-15 5.3E-20 149.4 17.5 139 272-451 90-236 (324)
43 1g8p_A Magnesium-chelatase 38 99.7 1.5E-15 5E-20 150.9 17.2 157 272-452 144-321 (350)
44 1d2n_A N-ethylmaleimide-sensit 99.7 4.7E-16 1.6E-20 150.8 13.2 121 272-427 124-246 (272)
45 2dhr_A FTSH; AAA+ protein, hex 99.7 5.9E-16 2E-20 164.9 14.8 146 272-454 123-272 (499)
46 2bjv_A PSP operon transcriptio 99.7 1.2E-16 4E-21 154.3 8.3 130 272-428 100-238 (265)
47 2r44_A Uncharacterized protein 99.6 5.3E-15 1.8E-19 147.1 18.0 161 273-453 110-297 (331)
48 2chg_A Replication factor C sm 99.6 6.9E-15 2.4E-19 134.2 16.7 123 272-451 102-224 (226)
49 1ixz_A ATP-dependent metallopr 99.6 3.7E-15 1.3E-19 142.9 14.6 142 272-450 108-253 (254)
50 2qby_B CDC6 homolog 3, cell di 99.6 2.2E-14 7.5E-19 144.0 18.0 133 275-452 136-269 (384)
51 2chq_A Replication factor C sm 99.6 2.3E-14 8E-19 139.7 17.0 124 272-452 102-225 (319)
52 1ojl_A Transcriptional regulat 99.6 1.5E-15 5.3E-20 151.3 8.5 131 272-428 96-233 (304)
53 2v1u_A Cell division control p 99.6 1.7E-14 5.7E-19 144.0 15.9 142 272-452 130-275 (387)
54 1iy2_A ATP-dependent metallopr 99.6 2.2E-14 7.7E-19 139.8 15.6 142 272-450 132-277 (278)
55 1in4_A RUVB, holliday junction 99.6 2.6E-14 9E-19 143.6 16.5 141 272-453 102-250 (334)
56 3bos_A Putative DNA replicatio 99.6 7.4E-15 2.5E-19 136.9 10.9 136 272-451 104-241 (242)
57 1sxj_D Activator 1 41 kDa subu 99.6 8.5E-15 2.9E-19 145.3 11.4 130 272-452 133-262 (353)
58 2z4s_A Chromosomal replication 99.6 1.7E-14 5.7E-19 151.0 13.1 139 272-455 194-334 (440)
59 1njg_A DNA polymerase III subu 99.6 1E-13 3.6E-18 127.4 16.8 124 272-451 126-249 (250)
60 1iqp_A RFCS; clamp loader, ext 99.6 4.9E-14 1.7E-18 137.9 15.5 124 272-452 110-233 (327)
61 1l8q_A Chromosomal replication 99.5 2.7E-14 9.3E-19 141.8 12.9 137 272-452 98-239 (324)
62 1jr3_A DNA polymerase III subu 99.5 2E-13 6.7E-18 136.5 17.5 125 272-452 119-243 (373)
63 1sxj_B Activator 1 37 kDa subu 99.5 1.8E-13 6.2E-18 133.6 15.7 124 272-452 107-230 (323)
64 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 2.5E-13 8.5E-18 144.7 16.2 154 273-447 110-280 (500)
65 3f9v_A Minichromosome maintena 99.5 5.8E-14 2E-18 152.4 10.5 162 272-450 391-584 (595)
66 1sxj_E Activator 1 40 kDa subu 99.5 6.7E-13 2.3E-17 132.3 17.1 108 272-428 134-242 (354)
67 2qby_A CDC6 homolog 1, cell di 99.5 1E-12 3.4E-17 130.8 17.6 142 272-451 128-270 (386)
68 1fnn_A CDC6P, cell division co 99.5 1.2E-12 4E-17 131.2 18.1 147 272-452 125-273 (389)
69 1sxj_A Activator 1 95 kDa subu 99.5 1.2E-13 4.2E-18 146.9 10.7 109 272-427 148-256 (516)
70 1sxj_C Activator 1 40 kDa subu 99.5 7.7E-13 2.6E-17 132.5 15.5 129 272-452 110-238 (340)
71 1qvr_A CLPB protein; coiled co 99.5 3.3E-13 1.1E-17 151.7 14.0 108 272-406 263-370 (854)
72 1jbk_A CLPB protein; beta barr 99.5 6.6E-14 2.3E-18 124.8 6.7 79 272-368 115-194 (195)
73 1r6b_X CLPA protein; AAA+, N-t 99.4 2.4E-12 8.4E-17 142.2 20.3 148 272-451 278-431 (758)
74 3pxg_A Negative regulator of g 99.4 9.9E-13 3.4E-17 138.4 11.9 96 272-406 267-363 (468)
75 1ypw_A Transitional endoplasmi 99.4 1.7E-12 5.7E-17 145.5 12.3 84 272-369 297-382 (806)
76 1a5t_A Delta prime, HOLB; zinc 99.4 4.7E-12 1.6E-16 127.2 14.4 100 272-425 108-207 (334)
77 1ny5_A Transcriptional regulat 99.4 1.4E-12 4.9E-17 134.0 9.7 145 272-449 231-383 (387)
78 3dzd_A Transcriptional regulat 99.3 4.5E-13 1.5E-17 137.1 5.1 131 272-428 222-359 (368)
79 3k1j_A LON protease, ATP-depen 99.3 9.6E-13 3.3E-17 142.6 6.9 157 268-451 198-373 (604)
80 3n70_A Transport activator; si 99.3 4.9E-13 1.7E-17 118.5 3.0 36 72-108 25-63 (145)
81 3co5_A Putative two-component 99.3 4.8E-13 1.6E-17 118.4 2.9 35 72-107 28-62 (143)
82 3pxi_A Negative regulator of g 99.3 4E-12 1.4E-16 140.9 10.3 93 272-406 267-363 (758)
83 2p65_A Hypothetical protein PF 99.3 1.2E-12 3.9E-17 116.9 4.6 72 272-360 115-187 (187)
84 2gno_A DNA polymerase III, gam 99.2 4.7E-11 1.6E-15 119.4 10.0 68 272-369 82-149 (305)
85 1w5s_A Origin recognition comp 99.1 6.5E-10 2.2E-14 112.2 13.4 142 272-450 138-290 (412)
86 3f8t_A Predicted ATPase involv 98.9 2.1E-09 7.1E-14 113.7 9.9 162 268-450 297-480 (506)
87 4akg_A Glutathione S-transfera 98.9 2.2E-09 7.5E-14 132.5 10.3 146 272-429 1336-1488(2695)
88 1jr3_D DNA polymerase III, del 98.7 2.7E-07 9.2E-12 92.1 15.7 131 272-452 76-208 (343)
89 2qen_A Walker-type ATPase; unk 98.4 5.5E-06 1.9E-10 81.0 15.8 31 73-105 33-63 (350)
90 3vkg_A Dynein heavy chain, cyt 98.4 1E-06 3.4E-11 110.1 11.8 142 273-429 1375-1526(3245)
91 2kjq_A DNAA-related protein; s 98.3 4E-07 1.4E-11 81.4 5.2 34 72-105 37-73 (149)
92 4akg_A Glutathione S-transfera 98.3 5.1E-06 1.7E-10 103.0 14.8 37 72-108 646-682 (2695)
93 3ec2_A DNA replication protein 98.2 5.3E-07 1.8E-11 81.5 3.4 24 72-95 39-62 (180)
94 2fna_A Conserved hypothetical 98.2 2E-05 6.7E-10 77.1 14.0 34 73-106 32-65 (357)
95 1u0j_A DNA replication protein 98.0 1.2E-05 4.3E-10 79.1 9.4 25 72-96 105-129 (267)
96 3trf_A Shikimate kinase, SK; a 98.0 2.6E-06 8.9E-11 76.8 4.0 34 71-104 5-38 (185)
97 1qhx_A CPT, protein (chloramph 98.0 5.6E-06 1.9E-10 74.0 4.8 34 71-104 3-36 (178)
98 2iyv_A Shikimate kinase, SK; t 97.9 6.2E-06 2.1E-10 74.4 4.0 33 72-104 3-35 (184)
99 3vaa_A Shikimate kinase, SK; s 97.9 1.5E-05 5E-10 73.4 6.6 33 72-104 26-58 (199)
100 3cmw_A Protein RECA, recombina 97.9 4.7E-06 1.6E-10 99.5 3.9 35 70-104 1079-1118(1706)
101 2w58_A DNAI, primosome compone 97.8 8.7E-06 3E-10 74.5 3.7 35 71-105 54-91 (202)
102 1via_A Shikimate kinase; struc 97.8 8.5E-06 2.9E-10 73.1 3.5 31 73-103 6-36 (175)
103 3vkg_A Dynein heavy chain, cyt 97.8 0.00033 1.1E-08 88.0 18.2 36 72-107 605-640 (3245)
104 3kb2_A SPBC2 prophage-derived 97.8 1.3E-05 4.4E-10 70.7 4.3 32 73-104 3-34 (173)
105 2rhm_A Putative kinase; P-loop 97.8 1.3E-05 4.4E-10 72.3 4.0 33 71-103 5-37 (193)
106 3iij_A Coilin-interacting nucl 97.8 1.3E-05 4.3E-10 72.2 3.8 33 71-103 11-43 (180)
107 1kag_A SKI, shikimate kinase I 97.8 1.4E-05 4.6E-10 71.1 3.8 31 72-102 5-35 (173)
108 2cdn_A Adenylate kinase; phosp 97.8 1.6E-05 5.3E-10 73.0 4.3 34 70-103 19-52 (201)
109 1zuh_A Shikimate kinase; alpha 97.8 1.4E-05 4.7E-10 71.2 3.7 32 72-103 8-39 (168)
110 1y63_A LMAJ004144AAA protein; 97.7 1.4E-05 4.7E-10 72.8 3.5 33 71-103 10-43 (184)
111 1tev_A UMP-CMP kinase; ploop, 97.7 1.5E-05 5.2E-10 71.6 3.4 33 71-103 3-35 (196)
112 1e6c_A Shikimate kinase; phosp 97.7 1.9E-05 6.4E-10 70.1 3.7 32 72-103 3-34 (173)
113 3t61_A Gluconokinase; PSI-biol 97.7 2.5E-05 8.4E-10 71.7 4.5 34 71-104 18-51 (202)
114 1ly1_A Polynucleotide kinase; 97.7 1.1E-05 3.7E-10 71.7 2.0 30 71-100 2-32 (181)
115 1qf9_A UMP/CMP kinase, protein 97.7 2.2E-05 7.4E-10 70.4 3.9 34 70-103 5-38 (194)
116 2c95_A Adenylate kinase 1; tra 97.7 2.2E-05 7.6E-10 70.9 3.9 33 71-103 9-41 (196)
117 1aky_A Adenylate kinase; ATP:A 97.7 2.3E-05 7.7E-10 73.0 3.7 33 71-103 4-36 (220)
118 2ze6_A Isopentenyl transferase 97.6 2.8E-05 9.4E-10 75.0 4.3 33 73-105 3-35 (253)
119 2bwj_A Adenylate kinase 5; pho 97.6 2.5E-05 8.6E-10 70.7 3.8 33 71-103 12-44 (199)
120 3cm0_A Adenylate kinase; ATP-b 97.6 1.8E-05 6.2E-10 71.1 2.6 31 72-102 5-35 (186)
121 3lw7_A Adenylate kinase relate 97.6 2.5E-05 8.6E-10 68.3 3.3 29 73-102 3-31 (179)
122 3sr0_A Adenylate kinase; phosp 97.6 8.8E-05 3E-09 69.8 7.3 28 73-100 2-29 (206)
123 2pt5_A Shikimate kinase, SK; a 97.6 3.1E-05 1.1E-09 68.4 3.8 32 73-104 2-33 (168)
124 3umf_A Adenylate kinase; rossm 97.6 8.1E-05 2.8E-09 70.9 6.7 31 70-100 28-58 (217)
125 1zd8_A GTP:AMP phosphotransfer 97.6 3E-05 1E-09 72.6 3.6 33 71-103 7-39 (227)
126 1zak_A Adenylate kinase; ATP:A 97.6 2.4E-05 8.3E-10 72.9 2.9 33 70-102 4-36 (222)
127 1ukz_A Uridylate kinase; trans 97.6 3.3E-05 1.1E-09 70.7 3.8 34 70-103 14-47 (203)
128 1qzm_A ATP-dependent protease 97.6 0.00021 7.3E-09 59.7 8.2 87 358-453 2-92 (94)
129 1kht_A Adenylate kinase; phosp 97.6 2.9E-05 9.9E-10 69.6 2.9 25 72-96 4-28 (192)
130 3dl0_A Adenylate kinase; phosp 97.6 3.9E-05 1.3E-09 71.0 3.8 31 73-103 2-32 (216)
131 3be4_A Adenylate kinase; malar 97.6 4.1E-05 1.4E-09 71.4 3.9 32 72-103 6-37 (217)
132 3fb4_A Adenylate kinase; psych 97.5 4.2E-05 1.4E-09 70.7 3.9 31 73-103 2-32 (216)
133 1ak2_A Adenylate kinase isoenz 97.5 3.9E-05 1.3E-09 72.4 3.7 33 70-102 15-47 (233)
134 3crm_A TRNA delta(2)-isopenten 97.5 4.4E-05 1.5E-09 77.0 4.0 38 70-107 4-41 (323)
135 2vli_A Antibiotic resistance p 97.5 4.2E-05 1.4E-09 68.4 3.4 30 71-100 5-34 (183)
136 1zp6_A Hypothetical protein AT 97.5 5E-05 1.7E-09 68.5 3.6 36 72-107 10-45 (191)
137 3tlx_A Adenylate kinase 2; str 97.5 4.9E-05 1.7E-09 72.6 3.5 34 70-103 28-61 (243)
138 1e4v_A Adenylate kinase; trans 97.5 6.5E-05 2.2E-09 69.7 4.0 31 73-103 2-32 (214)
139 1knq_A Gluconate kinase; ALFA/ 97.5 6.6E-05 2.3E-09 67.0 3.9 32 72-103 9-40 (175)
140 3a8t_A Adenylate isopentenyltr 97.5 4.5E-05 1.5E-09 77.5 3.1 36 72-107 41-76 (339)
141 2vhj_A Ntpase P4, P4; non- hyd 97.4 0.00017 6E-09 72.9 7.1 31 72-102 124-156 (331)
142 2p5t_B PEZT; postsegregational 97.4 6.2E-05 2.1E-09 72.2 3.5 38 70-107 31-68 (253)
143 3foz_A TRNA delta(2)-isopenten 97.4 7.3E-05 2.5E-09 75.2 3.8 38 70-107 9-46 (316)
144 1cke_A CK, MSSA, protein (cyti 97.4 7.3E-05 2.5E-09 69.3 3.6 31 72-102 6-36 (227)
145 3ake_A Cytidylate kinase; CMP 97.4 9.4E-05 3.2E-09 67.4 4.1 31 73-103 4-34 (208)
146 1uf9_A TT1252 protein; P-loop, 97.4 9.2E-05 3.2E-09 67.1 3.8 33 70-103 7-39 (203)
147 2qgz_A Helicase loader, putati 97.4 6.5E-05 2.2E-09 74.7 3.0 34 71-104 152-189 (308)
148 2r2a_A Uncharacterized protein 97.4 0.00029 9.9E-09 66.0 7.2 25 70-94 4-28 (199)
149 4eun_A Thermoresistant glucoki 97.4 0.00011 3.6E-09 67.6 4.1 31 72-102 30-60 (200)
150 2pez_A Bifunctional 3'-phospho 97.4 0.00014 4.6E-09 65.4 4.5 36 72-107 6-44 (179)
151 2pbr_A DTMP kinase, thymidylat 97.3 0.00014 4.8E-09 65.2 4.6 32 73-104 2-36 (195)
152 2if2_A Dephospho-COA kinase; a 97.3 9.8E-05 3.3E-09 67.5 3.5 31 73-104 3-33 (204)
153 3nwj_A ATSK2; P loop, shikimat 97.3 0.00022 7.7E-09 69.1 6.2 33 72-104 49-81 (250)
154 1gvn_B Zeta; postsegregational 97.3 0.00014 4.8E-09 71.5 4.6 35 70-104 32-66 (287)
155 1jjv_A Dephospho-COA kinase; P 97.3 0.0001 3.5E-09 67.6 3.4 30 73-103 4-33 (206)
156 1nks_A Adenylate kinase; therm 97.3 8E-05 2.7E-09 66.7 2.3 24 73-96 3-26 (194)
157 2xb4_A Adenylate kinase; ATP-b 97.3 0.00012 4.1E-09 68.7 3.5 30 73-102 2-31 (223)
158 1tue_A Replication protein E1; 97.2 0.00011 3.6E-09 70.1 2.7 29 72-100 59-87 (212)
159 2jaq_A Deoxyguanosine kinase; 97.2 0.00016 5.6E-09 65.3 3.8 28 73-100 2-29 (205)
160 2grj_A Dephospho-COA kinase; T 97.2 0.00041 1.4E-08 64.5 6.5 32 72-103 13-44 (192)
161 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.00022 7.4E-09 68.7 4.8 35 72-106 5-42 (260)
162 2v54_A DTMP kinase, thymidylat 97.2 0.00016 5.6E-09 65.7 3.6 34 71-104 4-38 (204)
163 2wwf_A Thymidilate kinase, put 97.2 9.9E-05 3.4E-09 67.5 2.1 33 71-103 10-42 (212)
164 2bbw_A Adenylate kinase 4, AK4 97.2 0.00017 5.7E-09 68.5 3.7 31 71-101 27-57 (246)
165 3exa_A TRNA delta(2)-isopenten 97.2 0.00016 5.5E-09 72.9 3.3 36 72-107 4-39 (322)
166 2h92_A Cytidylate kinase; ross 97.2 0.00021 7E-09 66.1 3.7 33 71-103 3-35 (219)
167 1ltq_A Polynucleotide kinase; 97.1 0.00014 4.7E-09 70.7 2.4 33 71-103 2-35 (301)
168 2plr_A DTMP kinase, probable t 97.1 0.00036 1.2E-08 63.4 4.9 27 72-98 5-31 (213)
169 3r20_A Cytidylate kinase; stru 97.1 0.00022 7.5E-09 68.7 3.6 32 71-102 9-40 (233)
170 1vht_A Dephospho-COA kinase; s 97.1 0.00021 7.3E-09 66.2 3.3 32 71-103 4-35 (218)
171 1q3t_A Cytidylate kinase; nucl 97.1 0.00026 9E-09 66.8 3.9 33 70-102 15-47 (236)
172 2z0h_A DTMP kinase, thymidylat 97.1 0.00035 1.2E-08 63.0 4.5 31 74-104 3-36 (197)
173 1nn5_A Similar to deoxythymidy 97.1 0.00016 5.4E-09 66.2 2.1 32 71-102 9-40 (215)
174 3uie_A Adenylyl-sulfate kinase 97.1 0.00038 1.3E-08 63.9 4.5 35 72-106 26-63 (200)
175 3d3q_A TRNA delta(2)-isopenten 97.0 0.00029 1E-08 71.5 3.7 34 72-105 8-41 (340)
176 1uj2_A Uridine-cytidine kinase 97.0 0.00037 1.3E-08 66.5 3.8 29 70-98 21-49 (252)
177 3cmu_A Protein RECA, recombina 97.0 0.001 3.5E-08 80.8 8.3 35 71-105 1427-1464(2050)
178 3eph_A TRNA isopentenyltransfe 96.9 0.00041 1.4E-08 72.1 3.8 36 72-107 3-38 (409)
179 2f6r_A COA synthase, bifunctio 96.9 0.00043 1.5E-08 67.7 3.7 34 70-104 74-107 (281)
180 2qt1_A Nicotinamide riboside k 96.9 0.00037 1.3E-08 64.0 3.0 33 72-104 22-55 (207)
181 4e22_A Cytidylate kinase; P-lo 96.9 0.00059 2E-08 65.4 4.0 29 72-100 28-56 (252)
182 3zvl_A Bifunctional polynucleo 96.8 0.00042 1.4E-08 71.6 2.6 35 70-104 257-291 (416)
183 1g29_1 MALK, maltose transport 96.8 0.002 6.8E-08 66.0 7.4 24 73-96 31-54 (372)
184 2qor_A Guanylate kinase; phosp 96.8 0.00069 2.3E-08 62.4 3.6 25 72-96 13-37 (204)
185 2yvu_A Probable adenylyl-sulfa 96.7 0.0012 4.1E-08 59.5 4.8 33 72-104 14-49 (186)
186 3asz_A Uridine kinase; cytidin 96.7 0.00072 2.5E-08 62.0 3.3 33 72-104 7-41 (211)
187 1ye8_A Protein THEP1, hypothet 96.7 0.00088 3E-08 61.3 3.7 28 73-100 2-29 (178)
188 2bdt_A BH3686; alpha-beta prot 96.7 0.00081 2.8E-08 60.7 3.3 24 73-96 4-27 (189)
189 3fdi_A Uncharacterized protein 96.7 0.0012 3.9E-08 61.6 4.3 29 73-101 8-36 (201)
190 1m7g_A Adenylylsulfate kinase; 96.7 0.0011 3.7E-08 61.3 4.0 33 72-104 26-62 (211)
191 3gfo_A Cobalt import ATP-bindi 96.6 0.0016 5.5E-08 63.9 5.1 33 73-105 36-70 (275)
192 3c8u_A Fructokinase; YP_612366 96.6 0.00074 2.5E-08 62.4 2.6 33 72-104 23-60 (208)
193 2qmh_A HPR kinase/phosphorylas 96.6 0.00089 3E-08 63.4 3.0 37 71-108 34-70 (205)
194 2ga8_A Hypothetical 39.9 kDa p 96.6 0.00023 7.9E-09 72.8 -1.3 30 72-101 25-54 (359)
195 1kgd_A CASK, peripheral plasma 96.6 0.0012 4.1E-08 59.6 3.6 25 72-96 6-30 (180)
196 3tr0_A Guanylate kinase, GMP k 96.6 0.0017 5.8E-08 58.9 4.6 33 73-107 9-41 (205)
197 1z47_A CYSA, putative ABC-tran 96.5 0.0027 9.2E-08 64.7 6.2 24 73-96 43-66 (355)
198 2j41_A Guanylate kinase; GMP, 96.5 0.0012 4.1E-08 59.9 3.1 24 72-95 7-30 (207)
199 3tau_A Guanylate kinase, GMP k 96.4 0.0014 4.8E-08 60.7 3.1 25 72-96 9-33 (208)
200 3a00_A Guanylate kinase, GMP k 96.4 0.0016 5.5E-08 59.1 3.4 25 72-96 2-26 (186)
201 3dm5_A SRP54, signal recogniti 96.4 0.011 3.7E-07 62.1 10.0 38 70-107 99-139 (443)
202 1svm_A Large T antigen; AAA+ f 96.4 0.0017 5.9E-08 66.6 3.9 30 72-101 170-199 (377)
203 1rz3_A Hypothetical protein rb 96.3 0.0034 1.2E-07 57.7 4.9 34 72-105 23-59 (201)
204 1sky_E F1-ATPase, F1-ATP synth 96.3 0.0035 1.2E-07 66.3 5.5 24 72-95 152-175 (473)
205 1x6v_B Bifunctional 3'-phospho 96.3 0.0026 9E-08 69.5 4.6 37 71-107 52-91 (630)
206 1g5t_A COB(I)alamin adenosyltr 96.2 0.024 8.1E-07 53.2 10.2 32 72-103 29-63 (196)
207 2cvh_A DNA repair and recombin 96.2 0.0036 1.2E-07 57.1 4.5 33 72-104 21-53 (220)
208 3gmt_A Adenylate kinase; ssgci 96.2 0.0024 8.1E-08 61.4 3.3 31 72-102 9-39 (230)
209 1ex7_A Guanylate kinase; subst 96.1 0.0038 1.3E-07 57.9 4.4 26 74-99 4-29 (186)
210 2iut_A DNA translocase FTSK; n 96.1 0.041 1.4E-06 59.4 12.9 75 272-369 343-420 (574)
211 1gtv_A TMK, thymidylate kinase 96.1 0.0015 5.1E-08 59.7 1.5 24 74-97 3-26 (214)
212 1lvg_A Guanylate kinase, GMP k 96.1 0.003 1E-07 58.1 3.4 25 72-96 5-29 (198)
213 3hdt_A Putative kinase; struct 96.1 0.0035 1.2E-07 59.6 3.9 30 72-101 15-44 (223)
214 3tqc_A Pantothenate kinase; bi 96.1 0.0046 1.6E-07 62.2 4.8 26 71-96 92-117 (321)
215 1a7j_A Phosphoribulokinase; tr 96.0 0.0018 6.1E-08 63.8 1.6 33 72-104 6-43 (290)
216 4a74_A DNA repair and recombin 95.9 0.004 1.4E-07 57.1 3.4 23 73-95 27-49 (231)
217 1znw_A Guanylate kinase, GMP k 95.9 0.0038 1.3E-07 57.5 3.2 24 73-96 22-45 (207)
218 3ney_A 55 kDa erythrocyte memb 95.9 0.0055 1.9E-07 57.4 4.3 25 72-96 20-44 (197)
219 1bif_A 6-phosphofructo-2-kinas 95.9 0.0022 7.6E-08 67.0 1.8 34 70-103 38-71 (469)
220 2w0m_A SSO2452; RECA, SSPF, un 95.9 0.0041 1.4E-07 56.9 3.2 31 72-102 24-57 (235)
221 1n0w_A DNA repair protein RAD5 95.9 0.0056 1.9E-07 56.7 4.1 23 72-94 25-47 (243)
222 2ehv_A Hypothetical protein PH 95.8 0.0039 1.3E-07 57.9 2.9 21 72-92 31-51 (251)
223 1sq5_A Pantothenate kinase; P- 95.8 0.0046 1.6E-07 61.1 3.5 25 72-96 81-105 (308)
224 1z6g_A Guanylate kinase; struc 95.8 0.0045 1.5E-07 57.9 3.2 24 72-95 24-47 (218)
225 4gp7_A Metallophosphoesterase; 95.8 0.004 1.4E-07 55.9 2.7 21 72-92 10-30 (171)
226 2axn_A 6-phosphofructo-2-kinas 95.8 0.0026 8.8E-08 67.8 1.7 30 70-99 34-63 (520)
227 2jeo_A Uridine-cytidine kinase 95.8 0.0053 1.8E-07 58.1 3.6 26 73-98 27-52 (245)
228 4eaq_A DTMP kinase, thymidylat 95.7 0.0078 2.7E-07 57.0 4.7 31 72-102 27-59 (229)
229 1c9k_A COBU, adenosylcobinamid 95.6 0.0077 2.6E-07 55.7 4.0 32 74-106 2-33 (180)
230 1m8p_A Sulfate adenylyltransfe 95.6 0.0066 2.3E-07 65.5 4.0 35 71-105 396-434 (573)
231 2dr3_A UPF0273 protein PH0284; 95.5 0.012 4.1E-07 54.4 5.1 33 72-104 24-59 (247)
232 1p5z_B DCK, deoxycytidine kina 95.5 0.003 1E-07 60.4 1.0 31 70-100 23-54 (263)
233 2ius_A DNA translocase FTSK; n 95.5 0.063 2.1E-06 57.2 11.1 76 272-370 297-375 (512)
234 2ocp_A DGK, deoxyguanosine kin 95.5 0.0084 2.9E-07 56.4 3.9 26 71-96 2-27 (241)
235 1htw_A HI0065; nucleotide-bind 95.5 0.0072 2.5E-07 54.3 3.3 23 73-95 35-57 (158)
236 1s96_A Guanylate kinase, GMP k 95.5 0.0071 2.4E-07 57.1 3.2 24 73-96 18-41 (219)
237 1rj9_A FTSY, signal recognitio 95.4 0.0086 2.9E-07 59.5 3.8 26 70-95 101-126 (304)
238 3lnc_A Guanylate kinase, GMP k 95.4 0.0046 1.6E-07 57.7 1.7 24 72-95 28-52 (231)
239 3b5x_A Lipid A export ATP-bind 95.4 0.015 5.3E-07 62.3 5.9 34 72-105 370-405 (582)
240 1odf_A YGR205W, hypothetical 3 95.3 0.0093 3.2E-07 58.8 3.6 25 72-96 32-56 (290)
241 2eyu_A Twitching motility prot 95.3 0.0083 2.8E-07 58.1 3.2 24 72-95 26-49 (261)
242 3kl4_A SRP54, signal recogniti 95.3 0.017 5.9E-07 60.3 5.7 37 70-106 96-135 (433)
243 2i3b_A HCR-ntpase, human cance 95.3 0.0091 3.1E-07 55.2 3.1 23 73-95 3-25 (189)
244 1g8f_A Sulfate adenylyltransfe 95.2 0.0063 2.1E-07 64.9 2.3 26 72-97 396-421 (511)
245 1vma_A Cell division protein F 95.2 0.014 4.8E-07 58.1 4.7 35 70-104 103-140 (306)
246 3hr8_A Protein RECA; alpha and 95.2 0.016 5.5E-07 59.0 5.1 33 73-105 63-98 (356)
247 4f4c_A Multidrug resistance pr 95.1 0.048 1.6E-06 64.3 9.5 34 72-105 445-480 (1321)
248 3aez_A Pantothenate kinase; tr 95.1 0.01 3.5E-07 59.1 3.2 25 72-96 91-115 (312)
249 3b9q_A Chloroplast SRP recepto 95.1 0.011 3.8E-07 58.6 3.4 25 71-95 100-124 (302)
250 1cr0_A DNA primase/helicase; R 95.1 0.011 3.9E-07 57.1 3.4 23 73-95 37-59 (296)
251 2px0_A Flagellar biosynthesis 95.1 0.013 4.4E-07 57.9 3.7 36 70-105 104-143 (296)
252 3e70_C DPA, signal recognition 95.0 0.013 4.6E-07 58.8 3.7 26 70-95 128-153 (328)
253 1nlf_A Regulatory protein REPA 94.9 0.013 4.5E-07 56.4 3.4 24 72-95 31-54 (279)
254 1pzn_A RAD51, DNA repair and r 94.9 0.019 6.6E-07 57.8 4.7 24 72-95 132-155 (349)
255 3kta_A Chromosome segregation 94.9 0.018 6.1E-07 51.3 4.0 26 71-96 26-51 (182)
256 2z43_A DNA repair and recombin 94.9 0.021 7E-07 56.7 4.7 24 72-95 108-131 (324)
257 2zts_A Putative uncharacterize 94.9 0.039 1.3E-06 51.0 6.3 32 73-104 32-67 (251)
258 3cr8_A Sulfate adenylyltranfer 94.8 0.013 4.4E-07 63.0 3.2 25 72-96 370-394 (552)
259 2dyk_A GTP-binding protein; GT 94.8 0.015 5.1E-07 49.6 3.0 22 73-94 3-24 (161)
260 2v3c_C SRP54, signal recogniti 94.8 0.018 6.1E-07 60.0 4.1 38 70-107 98-138 (432)
261 2v9p_A Replication protein E1; 94.8 0.014 5E-07 58.1 3.2 24 72-95 127-150 (305)
262 4i1u_A Dephospho-COA kinase; s 94.7 0.016 5.3E-07 54.9 3.3 31 73-104 11-41 (210)
263 2f1r_A Molybdopterin-guanine d 94.7 0.01 3.4E-07 54.1 1.8 25 72-96 3-27 (171)
264 1lw7_A Transcriptional regulat 94.7 0.014 4.6E-07 58.8 2.8 27 72-98 171-197 (365)
265 2r8r_A Sensor protein; KDPD, P 94.7 0.027 9.1E-07 54.1 4.7 33 72-104 7-42 (228)
266 2og2_A Putative signal recogni 94.6 0.017 5.7E-07 58.9 3.4 26 70-95 156-181 (359)
267 2ce2_X GTPase HRAS; signaling 94.6 0.019 6.4E-07 48.8 3.2 22 73-94 5-26 (166)
268 3jvv_A Twitching mobility prot 94.6 0.016 5.5E-07 58.8 3.2 24 72-95 124-147 (356)
269 1oix_A RAS-related protein RAB 94.6 0.018 6.1E-07 51.9 3.2 24 72-95 30-53 (191)
270 2f9l_A RAB11B, member RAS onco 94.6 0.017 5.7E-07 52.1 3.0 23 73-95 7-29 (199)
271 3tif_A Uncharacterized ABC tra 94.6 0.013 4.5E-07 55.7 2.4 24 73-96 33-56 (235)
272 2pcj_A ABC transporter, lipopr 94.6 0.014 4.8E-07 55.1 2.5 24 73-96 32-55 (224)
273 3tqf_A HPR(Ser) kinase; transf 94.6 0.023 7.9E-07 52.7 3.9 35 72-107 17-51 (181)
274 3v9p_A DTMP kinase, thymidylat 94.6 0.024 8.1E-07 54.1 4.1 23 73-95 27-49 (227)
275 3upu_A ATP-dependent DNA helic 94.6 0.023 7.7E-07 59.0 4.3 23 73-95 47-69 (459)
276 3b85_A Phosphate starvation-in 94.6 0.017 5.7E-07 54.2 2.9 22 73-94 24-45 (208)
277 1z2a_A RAS-related protein RAB 94.5 0.019 6.5E-07 49.2 3.1 23 72-94 6-28 (168)
278 2zr9_A Protein RECA, recombina 94.5 0.032 1.1E-06 56.3 5.1 33 72-104 62-97 (349)
279 3sop_A Neuronal-specific septi 94.5 0.02 6.7E-07 55.8 3.4 23 73-95 4-26 (270)
280 2onk_A Molybdate/tungstate ABC 94.5 0.017 5.9E-07 55.3 2.9 25 72-96 25-49 (240)
281 2ewv_A Twitching motility prot 94.5 0.018 6E-07 58.7 3.1 24 72-95 137-160 (372)
282 1zu4_A FTSY; GTPase, signal re 94.5 0.031 1E-06 55.9 4.8 36 70-105 104-142 (320)
283 2gza_A Type IV secretion syste 94.5 0.017 5.9E-07 58.4 3.0 25 72-96 176-200 (361)
284 1xjc_A MOBB protein homolog; s 94.5 0.022 7.6E-07 52.0 3.4 24 72-95 5-28 (169)
285 1nrj_B SR-beta, signal recogni 94.4 0.023 7.9E-07 51.7 3.5 24 72-95 13-36 (218)
286 4edh_A DTMP kinase, thymidylat 94.4 0.036 1.2E-06 52.1 4.9 31 72-102 7-40 (213)
287 1v5w_A DMC1, meiotic recombina 94.4 0.029 1E-06 56.2 4.5 22 73-94 124-145 (343)
288 1kao_A RAP2A; GTP-binding prot 94.4 0.022 7.5E-07 48.5 3.1 23 72-94 4-26 (167)
289 3tmk_A Thymidylate kinase; pho 94.3 0.059 2E-06 50.9 6.2 28 72-99 6-33 (216)
290 2cbz_A Multidrug resistance-as 94.3 0.017 5.7E-07 55.1 2.4 24 72-95 32-55 (237)
291 2oap_1 GSPE-2, type II secreti 94.3 0.019 6.5E-07 61.1 3.0 33 72-104 261-295 (511)
292 1u8z_A RAS-related protein RAL 94.3 0.024 8.1E-07 48.4 3.1 23 72-94 5-27 (168)
293 3fvq_A Fe(3+) IONS import ATP- 94.3 0.02 6.9E-07 58.4 3.1 24 73-96 32-55 (359)
294 1b0u_A Histidine permease; ABC 94.3 0.017 5.9E-07 55.9 2.4 24 73-96 34-57 (262)
295 1ek0_A Protein (GTP-binding pr 94.3 0.024 8.1E-07 48.6 3.1 23 72-94 4-26 (170)
296 1np6_A Molybdopterin-guanine d 94.2 0.024 8.3E-07 51.7 3.2 24 72-95 7-30 (174)
297 2nzj_A GTP-binding protein REM 94.2 0.023 7.8E-07 49.2 2.9 22 72-93 5-26 (175)
298 3bh0_A DNAB-like replicative h 94.2 0.063 2.2E-06 53.0 6.5 23 73-95 70-92 (315)
299 1g16_A RAS-related protein SEC 94.2 0.026 8.9E-07 48.4 3.2 23 72-94 4-26 (170)
300 1z0j_A RAB-22, RAS-related pro 94.2 0.025 8.5E-07 48.6 3.1 23 72-94 7-29 (170)
301 1u94_A RECA protein, recombina 94.2 0.039 1.3E-06 56.0 4.9 34 72-105 64-100 (356)
302 2zej_A Dardarin, leucine-rich 94.2 0.019 6.5E-07 51.1 2.3 22 73-94 4-25 (184)
303 2orw_A Thymidine kinase; TMTK, 94.1 0.028 9.5E-07 51.4 3.4 23 73-95 5-27 (184)
304 2ged_A SR-beta, signal recogni 94.1 0.029 9.9E-07 49.8 3.4 24 72-95 49-72 (193)
305 2pt7_A CAG-ALFA; ATPase, prote 94.1 0.019 6.5E-07 57.5 2.4 25 72-96 172-196 (330)
306 1g6h_A High-affinity branched- 94.1 0.02 6.7E-07 55.2 2.4 24 73-96 35-58 (257)
307 2wji_A Ferrous iron transport 94.1 0.025 8.6E-07 49.4 2.9 23 72-94 4-26 (165)
308 1ky3_A GTP-binding protein YPT 94.1 0.027 9.2E-07 48.9 3.1 23 72-94 9-31 (182)
309 4b3f_X DNA-binding protein smu 94.1 0.049 1.7E-06 59.1 5.7 33 73-105 207-242 (646)
310 2d2e_A SUFC protein; ABC-ATPas 94.1 0.024 8.1E-07 54.4 2.9 22 73-94 31-52 (250)
311 2wjg_A FEOB, ferrous iron tran 94.1 0.024 8.2E-07 50.0 2.8 23 72-94 8-30 (188)
312 3con_A GTPase NRAS; structural 94.0 0.024 8.3E-07 50.1 2.7 23 72-94 22-44 (190)
313 2zu0_C Probable ATP-dependent 94.0 0.024 8.3E-07 55.0 2.9 23 73-95 48-70 (267)
314 2erx_A GTP-binding protein DI- 94.0 0.025 8.6E-07 48.5 2.7 21 73-93 5-25 (172)
315 1ji0_A ABC transporter; ATP bi 94.0 0.021 7.1E-07 54.4 2.4 24 73-96 34-57 (240)
316 3q85_A GTP-binding protein REM 94.0 0.027 9.2E-07 48.5 2.9 21 73-93 4-24 (169)
317 1wms_A RAB-9, RAB9, RAS-relate 94.0 0.028 9.7E-07 48.8 3.1 23 72-94 8-30 (177)
318 1mv5_A LMRA, multidrug resista 94.0 0.021 7.2E-07 54.5 2.4 23 73-95 30-52 (243)
319 1z08_A RAS-related protein RAB 94.0 0.029 9.8E-07 48.3 3.1 23 72-94 7-29 (170)
320 1sgw_A Putative ABC transporte 94.0 0.021 7.3E-07 53.8 2.4 24 73-96 37-60 (214)
321 2ff7_A Alpha-hemolysin translo 94.0 0.021 7.2E-07 54.8 2.4 25 72-96 36-60 (247)
322 4g1u_C Hemin import ATP-bindin 94.0 0.021 7.2E-07 55.5 2.4 23 73-95 39-61 (266)
323 1c1y_A RAS-related protein RAP 94.0 0.029 1E-06 48.0 3.1 23 72-94 4-26 (167)
324 1r2q_A RAS-related protein RAB 94.0 0.029 1E-06 48.0 3.1 23 72-94 7-29 (170)
325 1r8s_A ADP-ribosylation factor 94.0 0.03 1E-06 48.0 3.1 22 73-94 2-23 (164)
326 1p9r_A General secretion pathw 93.9 0.03 1E-06 58.1 3.6 24 73-96 169-192 (418)
327 2yhs_A FTSY, cell division pro 93.9 0.028 9.4E-07 59.9 3.4 25 71-95 293-317 (503)
328 3io5_A Recombination and repai 93.9 0.05 1.7E-06 55.0 5.1 36 70-105 27-67 (333)
329 3q72_A GTP-binding protein RAD 93.9 0.029 9.8E-07 48.2 2.9 20 73-92 4-23 (166)
330 3bc1_A RAS-related protein RAB 93.9 0.03 1E-06 49.0 3.1 23 72-94 12-34 (195)
331 2olj_A Amino acid ABC transpor 93.9 0.023 7.8E-07 55.2 2.4 24 73-96 52-75 (263)
332 2lkc_A Translation initiation 93.9 0.032 1.1E-06 48.5 3.2 23 72-94 9-31 (178)
333 2fz4_A DNA repair protein RAD2 93.9 0.055 1.9E-06 51.1 5.0 33 72-104 109-141 (237)
334 2fn4_A P23, RAS-related protei 93.8 0.033 1.1E-06 48.3 3.2 23 72-94 10-32 (181)
335 2pze_A Cystic fibrosis transme 93.8 0.024 8.1E-07 53.7 2.4 25 72-96 35-59 (229)
336 3rlf_A Maltose/maltodextrin im 93.8 0.026 9E-07 58.0 2.9 24 73-96 31-54 (381)
337 2y8e_A RAB-protein 6, GH09086P 93.8 0.034 1.2E-06 48.1 3.2 23 72-94 15-37 (179)
338 2gks_A Bifunctional SAT/APS ki 93.8 0.04 1.4E-06 59.0 4.4 34 71-104 372-408 (546)
339 2ghi_A Transport protein; mult 93.8 0.024 8.1E-07 54.8 2.4 25 72-96 47-71 (260)
340 2it1_A 362AA long hypothetical 93.8 0.027 9.3E-07 57.4 2.9 24 73-96 31-54 (362)
341 4ag6_A VIRB4 ATPase, type IV s 93.8 0.05 1.7E-06 55.0 4.9 33 72-104 36-71 (392)
342 2yyz_A Sugar ABC transporter, 93.8 0.027 9.4E-07 57.3 2.9 24 73-96 31-54 (359)
343 1zd9_A ADP-ribosylation factor 93.8 0.029 1E-06 49.9 2.8 23 72-94 23-45 (188)
344 2ixe_A Antigen peptide transpo 93.8 0.024 8.2E-07 55.2 2.4 24 73-96 47-70 (271)
345 2hxs_A RAB-26, RAS-related pro 93.8 0.031 1.1E-06 48.5 2.9 23 72-94 7-29 (178)
346 1j8m_F SRP54, signal recogniti 93.8 0.048 1.6E-06 53.8 4.5 35 71-105 98-135 (297)
347 1m7b_A RND3/RHOE small GTP-bin 93.7 0.035 1.2E-06 49.1 3.2 23 72-94 8-30 (184)
348 2ihy_A ABC transporter, ATP-bi 93.7 0.025 8.4E-07 55.4 2.4 24 73-96 49-72 (279)
349 2wsm_A Hydrogenase expression/ 93.7 0.038 1.3E-06 50.4 3.5 25 72-96 31-55 (221)
350 2bme_A RAB4A, RAS-related prot 93.7 0.036 1.2E-06 48.6 3.2 23 72-94 11-33 (186)
351 1v43_A Sugar-binding transport 93.7 0.029 9.9E-07 57.4 2.9 24 73-96 39-62 (372)
352 4dsu_A GTPase KRAS, isoform 2B 93.7 0.035 1.2E-06 48.6 3.1 23 72-94 5-27 (189)
353 2a9k_A RAS-related protein RAL 93.7 0.035 1.2E-06 48.4 3.1 23 72-94 19-41 (187)
354 1vpl_A ABC transporter, ATP-bi 93.7 0.026 9E-07 54.5 2.4 24 73-96 43-66 (256)
355 2qi9_C Vitamin B12 import ATP- 93.7 0.026 9E-07 54.3 2.4 24 73-96 28-51 (249)
356 1z0f_A RAB14, member RAS oncog 93.6 0.036 1.2E-06 48.0 3.1 23 72-94 16-38 (179)
357 1upt_A ARL1, ADP-ribosylation 93.6 0.036 1.2E-06 47.7 3.1 23 72-94 8-30 (171)
358 2yz2_A Putative ABC transporte 93.6 0.027 9.1E-07 54.6 2.4 24 73-96 35-58 (266)
359 1ls1_A Signal recognition part 93.6 0.058 2E-06 53.0 4.8 35 70-104 97-134 (295)
360 2cxx_A Probable GTP-binding pr 93.6 0.038 1.3E-06 48.6 3.1 22 73-94 3-24 (190)
361 3clv_A RAB5 protein, putative; 93.6 0.037 1.3E-06 48.6 3.1 23 72-94 8-30 (208)
362 2q6t_A DNAB replication FORK h 93.6 0.11 3.6E-06 53.8 7.0 32 73-104 202-237 (444)
363 1svi_A GTP-binding protein YSX 93.6 0.038 1.3E-06 49.0 3.2 23 72-94 24-46 (195)
364 2hf9_A Probable hydrogenase ni 93.6 0.05 1.7E-06 49.8 4.0 24 72-95 39-62 (226)
365 3tw8_B RAS-related protein RAB 93.6 0.034 1.2E-06 48.2 2.7 22 72-93 10-31 (181)
366 3lda_A DNA repair protein RAD5 93.6 0.061 2.1E-06 55.5 5.1 23 72-94 179-201 (400)
367 3e1s_A Exodeoxyribonuclease V, 93.6 0.057 2E-06 58.1 5.1 32 71-102 204-238 (574)
368 3d31_A Sulfate/molybdate ABC t 93.5 0.024 8.2E-07 57.5 1.9 24 73-96 28-51 (348)
369 3lv8_A DTMP kinase, thymidylat 93.5 0.044 1.5E-06 52.5 3.7 25 72-96 28-52 (236)
370 3t1o_A Gliding protein MGLA; G 93.5 0.037 1.3E-06 48.7 2.9 24 72-95 15-38 (198)
371 2nq2_C Hypothetical ABC transp 93.5 0.029 1E-06 54.0 2.4 24 73-96 33-56 (253)
372 2oil_A CATX-8, RAS-related pro 93.5 0.038 1.3E-06 49.1 3.0 23 72-94 26-48 (193)
373 2efe_B Small GTP-binding prote 93.5 0.04 1.4E-06 48.0 3.1 23 72-94 13-35 (181)
374 1mh1_A RAC1; GTP-binding, GTPa 93.5 0.04 1.4E-06 48.1 3.1 23 72-94 6-28 (186)
375 1xp8_A RECA protein, recombina 93.5 0.062 2.1E-06 54.8 4.9 34 72-105 75-111 (366)
376 3gd7_A Fusion complex of cysti 93.4 0.036 1.2E-06 57.1 3.1 24 72-95 48-71 (390)
377 3kkq_A RAS-related protein M-R 93.4 0.041 1.4E-06 48.2 3.1 23 72-94 19-41 (183)
378 1m2o_B GTP-binding protein SAR 93.4 0.045 1.5E-06 49.1 3.3 23 72-94 24-46 (190)
379 3pqc_A Probable GTP-binding pr 93.4 0.041 1.4E-06 48.4 3.0 23 72-94 24-46 (195)
380 2j37_W Signal recognition part 93.4 0.058 2E-06 57.4 4.7 35 70-104 100-137 (504)
381 2bov_A RAla, RAS-related prote 93.4 0.042 1.4E-06 49.0 3.1 23 72-94 15-37 (206)
382 2i1q_A DNA repair and recombin 93.3 0.039 1.3E-06 54.3 3.1 23 72-94 99-121 (322)
383 2g6b_A RAS-related protein RAB 93.3 0.043 1.5E-06 47.7 3.1 23 72-94 11-33 (180)
384 2vp4_A Deoxynucleoside kinase; 93.3 0.039 1.3E-06 51.6 2.9 28 72-100 21-48 (230)
385 2pjz_A Hypothetical protein ST 93.3 0.033 1.1E-06 54.1 2.4 23 73-95 32-54 (263)
386 2npi_A Protein CLP1; CLP1-PCF1 93.3 0.039 1.3E-06 57.9 3.1 23 73-95 140-162 (460)
387 2xxa_A Signal recognition part 93.3 0.075 2.6E-06 55.3 5.2 39 69-107 98-140 (433)
388 3bwd_D RAC-like GTP-binding pr 93.2 0.046 1.6E-06 47.7 3.1 23 72-94 9-31 (182)
389 3ld9_A DTMP kinase, thymidylat 93.2 0.05 1.7E-06 51.8 3.5 27 71-97 21-47 (223)
390 3t5g_A GTP-binding protein RHE 93.2 0.049 1.7E-06 47.6 3.2 22 72-93 7-28 (181)
391 1pui_A ENGB, probable GTP-bind 93.2 0.021 7.1E-07 51.6 0.7 23 72-94 27-49 (210)
392 3tkl_A RAS-related protein RAB 93.2 0.047 1.6E-06 48.3 3.1 23 72-94 17-39 (196)
393 3dz8_A RAS-related protein RAB 93.2 0.049 1.7E-06 48.4 3.2 24 72-95 24-47 (191)
394 2iwr_A Centaurin gamma 1; ANK 93.2 0.037 1.3E-06 48.3 2.4 23 72-94 8-30 (178)
395 2gj8_A MNME, tRNA modification 93.1 0.048 1.6E-06 48.2 3.1 23 72-94 5-27 (172)
396 2fg5_A RAB-22B, RAS-related pr 93.1 0.05 1.7E-06 48.5 3.2 23 72-94 24-46 (192)
397 2gf9_A RAS-related protein RAB 93.1 0.048 1.6E-06 48.3 3.1 23 72-94 23-45 (189)
398 2atv_A RERG, RAS-like estrogen 93.1 0.049 1.7E-06 48.7 3.1 23 72-94 29-51 (196)
399 2fv8_A H6, RHO-related GTP-bin 93.1 0.051 1.8E-06 49.2 3.2 23 72-94 26-48 (207)
400 2r6a_A DNAB helicase, replicat 93.1 0.13 4.6E-06 53.2 6.8 31 73-103 205-239 (454)
401 1oxx_K GLCV, glucose, ABC tran 93.1 0.025 8.5E-07 57.4 1.2 24 73-96 33-56 (353)
402 4a1f_A DNAB helicase, replicat 93.1 0.14 4.6E-06 51.8 6.6 31 73-103 48-81 (338)
403 3p32_A Probable GTPase RV1496/ 93.0 0.072 2.5E-06 53.4 4.6 33 72-104 80-115 (355)
404 1x3s_A RAS-related protein RAB 93.0 0.051 1.8E-06 47.9 3.1 23 72-94 16-38 (195)
405 3c5c_A RAS-like protein 12; GD 93.0 0.051 1.8E-06 48.5 3.1 23 72-94 22-44 (187)
406 1z6t_A APAF-1, apoptotic prote 93.0 0.06 2.1E-06 56.9 4.1 22 72-93 148-169 (591)
407 1f6b_A SAR1; gtpases, N-termin 93.0 0.053 1.8E-06 49.0 3.2 22 72-93 26-47 (198)
408 3oes_A GTPase rhebl1; small GT 92.9 0.055 1.9E-06 48.7 3.2 23 72-94 25-47 (201)
409 3ihw_A Centg3; RAS, centaurin, 92.9 0.053 1.8E-06 48.4 3.1 23 72-94 21-43 (184)
410 4tmk_A Protein (thymidylate ki 92.9 0.057 1.9E-06 50.8 3.4 23 73-95 5-27 (213)
411 2h17_A ADP-ribosylation factor 92.9 0.05 1.7E-06 48.0 2.9 23 72-94 22-44 (181)
412 2gf0_A GTP-binding protein DI- 92.9 0.057 1.9E-06 47.9 3.2 23 72-94 9-31 (199)
413 2bbs_A Cystic fibrosis transme 92.9 0.042 1.4E-06 54.2 2.5 23 73-95 66-88 (290)
414 1moz_A ARL1, ADP-ribosylation 92.9 0.043 1.5E-06 48.0 2.3 21 72-92 19-39 (183)
415 2bcg_Y Protein YP2, GTP-bindin 92.9 0.057 1.9E-06 48.5 3.2 23 72-94 9-31 (206)
416 2p67_A LAO/AO transport system 92.9 0.059 2E-06 53.8 3.6 24 72-95 57-80 (341)
417 2ffh_A Protein (FFH); SRP54, s 92.9 0.084 2.9E-06 54.9 4.9 36 70-105 97-135 (425)
418 4f4c_A Multidrug resistance pr 92.9 0.23 7.9E-06 58.5 9.1 36 72-107 1106-1143(1321)
419 2fh5_B SR-beta, signal recogni 92.8 0.056 1.9E-06 48.9 3.2 24 72-95 8-31 (214)
420 1zbd_A Rabphilin-3A; G protein 92.8 0.052 1.8E-06 48.6 2.9 23 72-94 9-31 (203)
421 2a5j_A RAS-related protein RAB 92.8 0.055 1.9E-06 48.2 3.0 23 72-94 22-44 (191)
422 3reg_A RHO-like small GTPase; 92.8 0.056 1.9E-06 48.1 3.1 23 72-94 24-46 (194)
423 1vg8_A RAS-related protein RAB 92.8 0.056 1.9E-06 48.3 3.1 23 72-94 9-31 (207)
424 1z06_A RAS-related protein RAB 92.8 0.057 1.9E-06 47.9 3.1 23 72-94 21-43 (189)
425 1yrb_A ATP(GTP)binding protein 92.8 0.096 3.3E-06 49.1 4.8 32 72-103 15-48 (262)
426 3cbq_A GTP-binding protein REM 92.8 0.04 1.4E-06 49.8 2.1 22 72-93 24-45 (195)
427 1fzq_A ADP-ribosylation factor 92.8 0.061 2.1E-06 47.7 3.3 23 72-94 17-39 (181)
428 2p5s_A RAS and EF-hand domain 92.8 0.056 1.9E-06 48.5 3.0 23 72-94 29-51 (199)
429 2c9o_A RUVB-like 1; hexameric 92.8 0.039 1.3E-06 57.3 2.2 61 34-105 37-99 (456)
430 1gwn_A RHO-related GTP-binding 92.8 0.06 2E-06 49.2 3.2 23 72-94 29-51 (205)
431 2dpy_A FLII, flagellum-specifi 92.7 0.086 2.9E-06 54.9 4.7 26 72-97 158-183 (438)
432 1ksh_A ARF-like protein 2; sma 92.7 0.046 1.6E-06 48.2 2.2 23 72-94 19-41 (186)
433 2ew1_A RAS-related protein RAB 92.7 0.063 2.1E-06 49.0 3.2 23 72-94 27-49 (201)
434 1gm5_A RECG; helicase, replica 92.6 0.12 3.9E-06 57.9 5.9 34 70-103 388-424 (780)
435 2atx_A Small GTP binding prote 92.6 0.066 2.3E-06 47.5 3.2 23 72-94 19-41 (194)
436 2a5y_B CED-4; apoptosis; HET: 92.6 0.11 3.9E-06 54.9 5.6 23 71-93 152-174 (549)
437 3nh6_A ATP-binding cassette SU 92.6 0.029 9.8E-07 55.9 0.9 33 72-104 81-115 (306)
438 3tui_C Methionine import ATP-b 92.6 0.054 1.8E-06 55.4 2.9 24 73-96 56-79 (366)
439 3cph_A RAS-related protein SEC 92.5 0.064 2.2E-06 48.2 3.1 23 72-94 21-43 (213)
440 2qnr_A Septin-2, protein NEDD5 92.5 0.058 2E-06 53.1 3.0 23 72-94 19-41 (301)
441 3k53_A Ferrous iron transport 92.5 0.061 2.1E-06 51.5 3.1 23 72-94 4-26 (271)
442 1zj6_A ADP-ribosylation factor 92.5 0.066 2.3E-06 47.4 3.1 22 72-93 17-38 (187)
443 2obl_A ESCN; ATPase, hydrolase 92.5 0.099 3.4E-06 52.8 4.7 26 72-97 72-97 (347)
444 1e9r_A Conjugal transfer prote 92.5 0.09 3.1E-06 53.7 4.4 35 70-104 52-89 (437)
445 2b8t_A Thymidine kinase; deoxy 92.5 0.067 2.3E-06 50.8 3.2 31 73-103 14-47 (223)
446 2o52_A RAS-related protein RAB 92.5 0.066 2.3E-06 48.3 3.1 22 72-93 26-47 (200)
447 2fu5_C RAS-related protein RAB 92.3 0.039 1.3E-06 48.3 1.4 22 72-93 9-30 (183)
448 3bgw_A DNAB-like replicative h 92.3 0.16 5.6E-06 52.8 6.2 31 73-103 199-232 (444)
449 3lxx_A GTPase IMAP family memb 92.3 0.066 2.3E-06 50.0 2.9 23 72-94 30-52 (239)
450 2q3h_A RAS homolog gene family 92.3 0.068 2.3E-06 47.7 2.9 23 72-94 21-43 (201)
451 2gco_A H9, RHO-related GTP-bin 92.3 0.076 2.6E-06 47.8 3.2 23 72-94 26-48 (201)
452 2qm8_A GTPase/ATPase; G protei 92.3 0.069 2.4E-06 53.5 3.2 24 72-95 56-79 (337)
453 2h57_A ADP-ribosylation factor 92.2 0.06 2.1E-06 47.7 2.4 23 72-94 22-44 (190)
454 2b6h_A ADP-ribosylation factor 92.2 0.072 2.5E-06 47.8 2.9 22 72-93 30-51 (192)
455 1q57_A DNA primase/helicase; d 92.1 0.16 5.6E-06 53.1 6.1 45 73-126 244-292 (503)
456 1tf7_A KAIC; homohexamer, hexa 92.1 0.12 4.2E-06 54.5 5.1 33 72-104 40-76 (525)
457 2hup_A RAS-related protein RAB 92.1 0.081 2.8E-06 47.8 3.2 23 72-94 30-52 (201)
458 2j1l_A RHO-related GTP-binding 92.1 0.076 2.6E-06 48.5 3.1 22 72-93 35-56 (214)
459 2j0v_A RAC-like GTP-binding pr 92.1 0.082 2.8E-06 47.7 3.2 23 72-94 10-32 (212)
460 4bas_A ADP-ribosylation factor 92.0 0.07 2.4E-06 47.3 2.6 22 72-93 18-39 (199)
461 4gzl_A RAS-related C3 botulinu 92.0 0.086 3E-06 47.7 3.2 23 72-94 31-53 (204)
462 1ko7_A HPR kinase/phosphatase; 92.0 0.098 3.4E-06 52.4 3.9 35 72-107 145-179 (314)
463 2f7s_A C25KG, RAS-related prot 91.9 0.078 2.7E-06 48.0 2.9 23 72-94 26-48 (217)
464 2il1_A RAB12; G-protein, GDP, 91.9 0.077 2.6E-06 47.4 2.7 22 72-93 27-48 (192)
465 2qag_B Septin-6, protein NEDD5 91.8 0.071 2.4E-06 55.6 2.7 21 74-94 45-65 (427)
466 2cjw_A GTP-binding protein GEM 91.7 0.09 3.1E-06 47.3 3.1 22 73-94 8-29 (192)
467 1tf7_A KAIC; homohexamer, hexa 91.7 0.089 3E-06 55.6 3.4 23 73-95 283-305 (525)
468 4hlc_A DTMP kinase, thymidylat 91.7 0.14 4.9E-06 47.6 4.4 29 74-102 5-35 (205)
469 2yv5_A YJEQ protein; hydrolase 91.6 0.084 2.9E-06 51.9 2.9 23 72-95 166-188 (302)
470 3llu_A RAS-related GTP-binding 91.6 0.1 3.5E-06 46.7 3.3 23 72-94 21-43 (196)
471 2x77_A ADP-ribosylation factor 91.6 0.076 2.6E-06 46.9 2.3 21 72-92 23-43 (189)
472 2qu8_A Putative nucleolar GTP- 91.5 0.083 2.8E-06 48.7 2.5 22 72-93 30-51 (228)
473 3cpj_B GTP-binding protein YPT 91.4 0.099 3.4E-06 47.9 3.0 23 72-94 14-36 (223)
474 1u0l_A Probable GTPase ENGC; p 91.4 0.073 2.5E-06 52.2 2.2 24 72-95 170-193 (301)
475 2rcn_A Probable GTPase ENGC; Y 91.4 0.091 3.1E-06 53.5 2.9 24 72-95 216-239 (358)
476 3q3j_B RHO-related GTP-binding 91.3 0.11 3.6E-06 47.7 3.1 23 72-94 28-50 (214)
477 3b6e_A Interferon-induced heli 91.3 0.12 4E-06 46.5 3.3 24 72-95 49-72 (216)
478 1f2t_A RAD50 ABC-ATPase; DNA d 91.2 0.11 3.7E-06 45.8 3.0 25 71-95 23-47 (149)
479 1w36_D RECD, exodeoxyribonucle 91.2 0.1 3.6E-06 56.3 3.3 24 72-95 165-188 (608)
480 3llm_A ATP-dependent RNA helic 91.1 0.11 3.7E-06 48.6 3.0 21 72-92 77-97 (235)
481 1dek_A Deoxynucleoside monopho 91.1 0.1 3.4E-06 50.3 2.8 26 74-99 4-29 (241)
482 3hjn_A DTMP kinase, thymidylat 91.1 0.21 7.2E-06 46.0 4.9 31 74-104 3-36 (197)
483 2yc2_C IFT27, small RAB-relate 91.0 0.049 1.7E-06 48.5 0.5 23 72-94 21-43 (208)
484 2gk6_A Regulator of nonsense t 91.0 0.11 3.7E-06 56.3 3.2 24 72-95 196-219 (624)
485 2xtp_A GTPase IMAP family memb 90.9 0.12 4.2E-06 48.6 3.2 23 72-94 23-45 (260)
486 1knx_A Probable HPR(Ser) kinas 90.9 0.16 5.3E-06 50.9 4.1 36 72-108 148-183 (312)
487 3a1s_A Iron(II) transport prot 90.9 0.1 3.5E-06 50.1 2.6 22 72-93 6-27 (258)
488 3euj_A Chromosome partition pr 90.8 0.12 4E-06 54.8 3.2 24 72-95 30-53 (483)
489 2qag_C Septin-7; cell cycle, c 90.8 0.093 3.2E-06 54.4 2.4 23 73-95 33-55 (418)
490 3iby_A Ferrous iron transport 90.6 0.13 4.5E-06 49.2 3.2 22 73-94 3-24 (256)
491 1zcb_A G alpha I/13; GTP-bindi 90.5 0.11 3.9E-06 52.6 2.7 22 71-92 33-54 (362)
492 3ice_A Transcription terminati 90.4 0.14 4.8E-06 53.1 3.2 24 72-95 175-198 (422)
493 2www_A Methylmalonic aciduria 90.3 0.14 4.9E-06 51.4 3.2 24 72-95 75-98 (349)
494 1qhl_A Protein (cell division 90.3 0.051 1.7E-06 51.8 -0.1 23 74-96 30-52 (227)
495 1tq4_A IIGP1, interferon-induc 90.2 0.14 4.8E-06 53.1 3.1 24 72-95 70-93 (413)
496 1yqt_A RNAse L inhibitor; ATP- 90.2 0.13 4.4E-06 54.9 2.9 23 73-95 49-71 (538)
497 2g3y_A GTP-binding protein GEM 90.0 0.15 5.2E-06 47.3 2.9 22 72-93 38-59 (211)
498 3qks_A DNA double-strand break 89.9 0.16 5.4E-06 46.9 2.9 28 71-98 23-50 (203)
499 3b1v_A Ferrous iron uptake tra 89.9 0.15 5.2E-06 49.4 2.9 22 73-94 5-26 (272)
500 3b60_A Lipid A export ATP-bind 89.9 0.12 4E-06 55.5 2.3 33 72-104 370-404 (582)
No 1
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=100.00 E-value=3e-65 Score=536.53 Aligned_cols=427 Identities=54% Similarity=0.842 Sum_probs=288.7
Q ss_pred hhHhhhhhhcchhHHHHhhhhhcc--cccccCCCCCCccccccCCCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecC
Q psy2406 28 ANNLRNKFGIRKAILKASVYIDAP--NTRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEAT 105 (464)
Q Consensus 28 ~~~~l~~~~igq~~~~~~v~~~~~--~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s 105 (464)
+.+.+.++++||+.++.++..++. ++|.++... ++.+..|+++||+||||||||++|++||+.++++|+.++++
T Consensus 9 i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~----~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~ 84 (444)
T 1g41_A 9 IVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEP----LRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 84 (444)
T ss_dssp HHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTT----TTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccc----cccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecch
Confidence 456678899999999988776663 344444321 23334678999999999999999999999999999999999
Q ss_pred ceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCc---ccchhHHHHH
Q psy2406 106 KFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNE---NNNISTRQIF 182 (464)
Q Consensus 106 ~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~ 182 (464)
.+++.||+|.+.++++++++..+........+..++..+...++++++..|+..- |+..+.. ...+.+.+.+
T Consensus 85 ~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~-----dg~~~~~~v~a~~TN~~~~l 159 (444)
T 1g41_A 85 KFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPA-----KNQWGEVENHDSHSSTRQAF 159 (444)
T ss_dssp GGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC--------------------------------------------
T ss_pred hhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHh-----hccccccccccccccCHHHH
Confidence 9998899999999999999999887776655666677778889999999988542 2222211 0014457889
Q ss_pred HHHHhcCCCCCcEEEEEecCCC-CcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeHHHHHHHHHHHHHHhcCCHHH
Q psy2406 183 RKRLREGALDNKEIEIELNDTG-PHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDE 261 (464)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (464)
..+++.|..+|++|+|.++... |.+..++.+||+++|.|+..||+.+.|++++.++|+|+||++.|.++||.+|+|+++
T Consensus 160 d~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~ 239 (444)
T 1g41_A 160 RKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEE 239 (444)
T ss_dssp ------------------------------------------------------------------CCGGGSCSSCCHHH
T ss_pred HHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHH
Confidence 9999999999999999998874 778888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCC
Q psy2406 262 IQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD 341 (464)
Q Consensus 262 ~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~ 341 (464)
+.++|++++++++|+|+|||||++.+..+ .++|++++|||++||++|||.+++++++.++|+|++|||||+|...+|.+
T Consensus 240 ~~~~ai~~ae~~~il~~DEidki~~~~~~-~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~d 318 (444)
T 1g41_A 240 LKQKAIDAVEQNGIVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSD 318 (444)
T ss_dssp HHHHHHHHHHHHCEEEEETGGGGSCCSSC-SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGG
T ss_pred HHHHHHHHhccCCeeeHHHHHHHhhccCC-CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhh
Confidence 99999999989999999999999977553 57899999999999999999999998899999999999999999999999
Q ss_pred CchhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHH
Q psy2406 342 LIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYT 421 (464)
Q Consensus 342 f~PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r 421 (464)
++|||++||+++|.|++|+.+++.+|++.+++.+++++++++..+|+++.|+++|+++||+.++..|....++|||+|++
T Consensus 319 lipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~ 398 (444)
T 1g41_A 319 LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHT 398 (444)
T ss_dssp SCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHH
T ss_pred cchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999886444445899999999
Q ss_pred HHHHHHHHHhcccCCC---ceeecHHHHHhHhCCCCCCCCCCCcCC
Q psy2406 422 AMEKLLEEVSFNSNNI---SLLVDADYVNSRLGDLSINEDLSRYVL 464 (464)
Q Consensus 422 ~IE~~l~~~l~~~~~~---~v~I~~e~v~~~~~~~~~~~d~~~~~~ 464 (464)
+||+++++.+|++++. .++||.++|+++++..+.+.|||||||
T Consensus 399 ~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~~~dl~~~~l 444 (444)
T 1g41_A 399 VMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVENEDLSRFIL 444 (444)
T ss_dssp HHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTTTTTCHHHHHHHC
T ss_pred HHHHHHHHHHhhccccCCCeEEEeHHHHHHhcCccccCCChhcccC
Confidence 9999999999998853 389999999999999999999999997
No 2
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=100.00 E-value=4.3e-36 Score=304.71 Aligned_cols=285 Identities=32% Similarity=0.507 Sum_probs=221.1
Q ss_pred hhHhhhhhhcchhHHHHhhhhhcc----cccccCCCCCCccccccCCCcceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 28 ANNLRNKFGIRKAILKASVYIDAP----NTRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 28 ~~~~l~~~~igq~~~~~~v~~~~~----~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
+.+.+..+++||..++..+..++. +.+.+.... .....+.++||+||||||||++|++||+.++.||+.++
T Consensus 9 l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-----~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~ 83 (363)
T 3hws_A 9 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSN-----GVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 83 (363)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSS-----SCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccc-----cccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence 455677889999999988777663 222222111 11124578999999999999999999999999999999
Q ss_pred cCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCcccchhHHHHHH
Q psy2406 104 ATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFR 183 (464)
Q Consensus 104 ~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (464)
++.+..++|+|.+.+..+..++..+
T Consensus 84 ~~~l~~~~~~g~~~~~~~~~~~~~~------------------------------------------------------- 108 (363)
T 3hws_A 84 ATTLTEAGYVGEDVENIIQKLLQKC------------------------------------------------------- 108 (363)
T ss_dssp HHHHTTCHHHHHHHTHHHHHHHHHT-------------------------------------------------------
T ss_pred hHHhcccccccccHHHHHHHHHHHh-------------------------------------------------------
Confidence 9999888888876555555555441
Q ss_pred HHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHH
Q psy2406 184 KRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQ 263 (464)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 263 (464)
+ |
T Consensus 109 ---------------------~--------~------------------------------------------------- 110 (363)
T 3hws_A 109 ---------------------D--------Y------------------------------------------------- 110 (363)
T ss_dssp ---------------------T--------T-------------------------------------------------
T ss_pred ---------------------h--------h-------------------------------------------------
Confidence 0 0
Q ss_pred HHHHhhccCCcEEEEeccccccCcCCCCC-CCCcchhhHHHhhhccccCceeee----------e-eeeecCceeEeecc
Q psy2406 264 QKAINNVEQNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNT----------K-YGIIKTDHILFIAS 331 (464)
Q Consensus 264 ~eAv~~a~~~sVIfIDEIDK~~~~~~~~~-~~d~~~~gvq~~LLqlLEG~~v~~----------~-~~~i~Tsnil~I~a 331 (464)
.++.+ +++||||||||++++.+.+.. +.+++++++|+.||++|||..+.. . ...+.|+|++||++
T Consensus 111 --~~~~~-~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~ 187 (363)
T 3hws_A 111 --DVQKA-QRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 187 (363)
T ss_dssp --CHHHH-HHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEE
T ss_pred --hHHhc-CCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEec
Confidence 01223 578999999999998766532 566777789999999999764332 1 24789999999999
Q ss_pred CCccc---------cC---------------------------CC-----CCchhhhccCCeEEEcCCCCHHHHHHHHHh
Q psy2406 332 GAFHL---------AK---------------------------PS-----DLIPELQGRFPIRVELDSLSISDFTRIMTS 370 (464)
Q Consensus 332 g~f~~---------~~---------------------------p~-----~f~PEfl~R~d~iV~f~~Lt~~el~~Il~~ 370 (464)
|+|.. .+ |. .|+|+|++||+.++.|.||+.+++.+|+..
T Consensus 188 g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 188 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp ECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHS
T ss_pred CCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHH
Confidence 98741 00 11 189999999999999999999999999975
Q ss_pred hHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccCCCc----eeecHHHH
Q psy2406 371 TNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS----LLVDADYV 446 (464)
Q Consensus 371 ~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~----v~I~~e~v 446 (464)
..+.+++++.+.+...++.+.++++++++|++.+|++ ++|||.|+++|++.+.+.+++.++.+ +.||.++|
T Consensus 268 ~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~-----~~gaR~L~~~ie~~~~~~l~~~~~~~~~~~~~I~~~~v 342 (363)
T 3hws_A 268 PKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMAR-----KTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 342 (363)
T ss_dssp STTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHT-----TCTTTTHHHHHHHHHHHHHHSTTTCCCSEEEECHHHHT
T ss_pred HHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCC-----ccCchHHHHHHHHHHHHHHHhcccccCCceeEEcHHHH
Confidence 4455888888888888999999999999999999998 89999999999999999999998652 89999999
Q ss_pred HhHhCCCCCCCC
Q psy2406 447 NSRLGDLSINED 458 (464)
Q Consensus 447 ~~~~~~~~~~~d 458 (464)
++..+.++...+
T Consensus 343 ~~~~~~~~~~~~ 354 (363)
T 3hws_A 343 DGQSEPLLIYGK 354 (363)
T ss_dssp TCCSCCEEEC--
T ss_pred hCcCCceeeccC
Confidence 998887776543
No 3
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=100.00 E-value=4.5e-34 Score=279.14 Aligned_cols=297 Identities=56% Similarity=0.844 Sum_probs=236.0
Q ss_pred hhHhhhhhhcchhHHHHhhhhhccc--ccccCCCCCCccccccCCCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecC
Q psy2406 28 ANNLRNKFGIRKAILKASVYIDAPN--TRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEAT 105 (464)
Q Consensus 28 ~~~~l~~~~igq~~~~~~v~~~~~~--~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s 105 (464)
+.+.+...++|+..++..+...+.. .+.++.. .......|.++||+||||||||++|+++|+.++.+++.++++
T Consensus 9 l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~----~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~ 84 (310)
T 1ofh_A 9 IVSELDQHIIGQADAKRAVAIALRNRWRRMQLQE----PLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 84 (310)
T ss_dssp HHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCH----HHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcc----cccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcch
Confidence 4556778899999999888877655 3333311 112223567899999999999999999999999999999999
Q ss_pred ceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHH
Q psy2406 106 KFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKR 185 (464)
Q Consensus 106 ~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (464)
.+...+|+|.+.+..+++++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------------- 107 (310)
T 1ofh_A 85 KFTEVGYVGKEVDSIIRDLTDSA--------------------------------------------------------- 107 (310)
T ss_dssp GGSSCCSGGGSTTHHHHHHHHTT---------------------------------------------------------
T ss_pred hcccCCccCccHHHHHHHHHHHh---------------------------------------------------------
Confidence 99887899988777777665441
Q ss_pred HhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy2406 186 LREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQK 265 (464)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e 265 (464)
||.
T Consensus 108 -------------------~~~---------------------------------------------------------- 110 (310)
T 1ofh_A 108 -------------------GGA---------------------------------------------------------- 110 (310)
T ss_dssp -------------------TTC----------------------------------------------------------
T ss_pred -------------------hHH----------------------------------------------------------
Confidence 000
Q ss_pred HHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchh
Q psy2406 266 AINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPE 345 (464)
Q Consensus 266 Av~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PE 345 (464)
+..+.+++||||||||++++...+ .+.+.++.++|+.||++||+..+..+++...++++++|+++++..+++..++|+
T Consensus 111 -~~~~~~~~vl~iDEi~~l~~~~~~-~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 188 (310)
T 1ofh_A 111 -IDAVEQNGIVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPE 188 (310)
T ss_dssp -HHHHHHHCEEEEECGGGGSCCSSC-CSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHH
T ss_pred -HhhccCCCEEEEEChhhcCccccc-cccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHH
Confidence 011124789999999999887653 355677778899999999998887777778889999999987666777889999
Q ss_pred hhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHH
Q psy2406 346 LQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEK 425 (464)
Q Consensus 346 fl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~ 425 (464)
|++||+.+|.|++|+.+++.+|++.....+..++.+.+...+..+.++++++++|++.++..|...+.+++|.|.+++++
T Consensus 189 l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~ 268 (310)
T 1ofh_A 189 LQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMER 268 (310)
T ss_dssp HHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHH
T ss_pred HHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHH
Confidence 99999988999999999999999743335677777777778889999999999999999753222235899999999999
Q ss_pred HHHHHhcccCC---CceeecHHHHHhHhCCCCCCCCCCCcCC
Q psy2406 426 LLEEVSFNSNN---ISLLVDADYVNSRLGDLSINEDLSRYVL 464 (464)
Q Consensus 426 ~l~~~l~~~~~---~~v~I~~e~v~~~~~~~~~~~d~~~~~~ 464 (464)
.+....+.... ..+.||.++|+.+++..+...++++|||
T Consensus 269 ~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~~~~~~~~~~ 310 (310)
T 1ofh_A 269 LMDKISFSASDMNGQTVNIDAAYVADALGEVVENEDLSRFIL 310 (310)
T ss_dssp HSHHHHHHGGGCTTCEEEECHHHHHHHTCSSSSCCCCTTSCC
T ss_pred HHHhhhcCCccccCCEEEEeeHHHHHHHHhhhhhhhHHhhcC
Confidence 88776655432 2367999999999999999999999997
No 4
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=100.00 E-value=1e-32 Score=280.85 Aligned_cols=293 Identities=30% Similarity=0.443 Sum_probs=207.1
Q ss_pred CchhHhhhhhhcchhHHHHhhhhhc----ccccccC-------CCCCCccc---cccCCCcceEEEecCCCchHHHHHHH
Q psy2406 26 PSANNLRNKFGIRKAILKASVYIDA----PNTRANN-------ISRNNPVI---RENNVILDMVIKVLLLVGKTEIARRL 91 (464)
Q Consensus 26 ~~~~~~l~~~~igq~~~~~~v~~~~----~~~r~~~-------~~~~~~~~---~~~~~p~~iLl~GP~G~GKT~LAr~l 91 (464)
..+.+.|.++++||+.++.++..++ ++.+++. .++++|.. .....+.++||+||||||||++|+++
T Consensus 13 ~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~l 92 (376)
T 1um8_A 13 KELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTL 92 (376)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHH
Confidence 3467788899999999998887766 5555432 12222210 00123467999999999999999999
Q ss_pred HHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCC
Q psy2406 92 AKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNN 171 (464)
Q Consensus 92 A~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 171 (464)
|+.++.||+.++++.+...+|+|.+.+..+..++..+
T Consensus 93 a~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------------------------------------- 129 (376)
T 1um8_A 93 AKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS------------------------------------------- 129 (376)
T ss_dssp HHHTTCCEEEEEGGGCC--------CTHHHHHHHHHT-------------------------------------------
T ss_pred HHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhc-------------------------------------------
Confidence 9999999999999999888888877666555554331
Q ss_pred cccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeHHHHHHHHHHH
Q psy2406 172 ENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDE 251 (464)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (464)
+ |
T Consensus 130 ---------------------------------~--------~------------------------------------- 131 (376)
T 1um8_A 130 ---------------------------------D--------W------------------------------------- 131 (376)
T ss_dssp ---------------------------------T--------T-------------------------------------
T ss_pred ---------------------------------c--------c-------------------------------------
Confidence 0 0
Q ss_pred HHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCC-CCCCcchhhHHHhhhccccCceeee-----------eee
Q psy2406 252 EANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNT-----------KYG 319 (464)
Q Consensus 252 ~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~-~~~d~~~~gvq~~LLqlLEG~~v~~-----------~~~ 319 (464)
.+..+ +++||||||||++.+.+.+. ...+.+++++|+.||++||+..+.+ ...
T Consensus 132 --------------~~~~~-~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~ 196 (376)
T 1um8_A 132 --------------NVQKA-QKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFI 196 (376)
T ss_dssp --------------CHHHH-TTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC---------------
T ss_pred --------------hhhhc-CCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceE
Confidence 01233 68999999999998875432 2456777779999999999875432 113
Q ss_pred eecCceeEeeccCCccc-------------------c----C--------------CCCCchhhhccCCeEEEcCCCCHH
Q psy2406 320 IIKTDHILFIASGAFHL-------------------A----K--------------PSDLIPELQGRFPIRVELDSLSIS 362 (464)
Q Consensus 320 ~i~Tsnil~I~ag~f~~-------------------~----~--------------p~~f~PEfl~R~d~iV~f~~Lt~~ 362 (464)
.+.|+|+++|+++++.. . + ...|.|+|++||+.++.|+||+.+
T Consensus 197 ~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~ 276 (376)
T 1um8_A 197 QIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLE 276 (376)
T ss_dssp CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHH
T ss_pred EEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHH
Confidence 58899999999876420 0 0 124889999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccCC---Cce
Q psy2406 363 DFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNN---ISL 439 (464)
Q Consensus 363 el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~---~~v 439 (464)
++..|+......+++++.+.+...+..+.++++++++|++.++.+ .+|+|.|+++|++.+...+++.+. ..+
T Consensus 277 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~-----~~~~R~L~~~le~~~~~~~~~~~~~~~~~~ 351 (376)
T 1um8_A 277 AMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALER-----KTGARGLRAIIEDFCLDIMFDLPKLKGSEV 351 (376)
T ss_dssp HHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHT-----TCTGGGHHHHHHHHHHHHHHTGGGGTTSEE
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhccc-----ccCcHHHHHHHHHHHHHHHhhccCCCCCEE
Confidence 999999754456778888888778899999999999999999876 699999999999999999888764 338
Q ss_pred eecHHHHHhHhCCCCCCCCC
Q psy2406 440 LVDADYVNSRLGDLSINEDL 459 (464)
Q Consensus 440 ~I~~e~v~~~~~~~~~~~d~ 459 (464)
.||.++|++.....+...+.
T Consensus 352 ~i~~~~v~~~~~~~~~~~~~ 371 (376)
T 1um8_A 352 RITKDCVLKQAEPLIIAKTH 371 (376)
T ss_dssp EECHHHHTTSSCCEEEC---
T ss_pred EEeHHHhcCCCCceeecccc
Confidence 89999999987776654443
No 5
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.97 E-value=1.1e-31 Score=296.92 Aligned_cols=262 Identities=16% Similarity=0.230 Sum_probs=214.2
Q ss_pred ccCccccccchhhhhccCchhHhhhhhhcchhHHHHhhhhhcccccccCCCCCCccccccCCCcceEEEecCCCchHHHH
Q psy2406 9 NIGVKAVKIGTNACENAPSANNLRNKFGIRKAILKASVYIDAPNTRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIA 88 (464)
Q Consensus 9 ~~gi~~~k~~~~~~e~~~~~~~~l~~~~igq~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LA 88 (464)
-+|||+.++..++.+++..+++.+...++||..++..+..++...++|+.++++|. .++||+||||||||++|
T Consensus 433 ~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~-------~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 433 IARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPV-------GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp HSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCS-------EEEEEECSTTSSHHHHH
T ss_pred hcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHhcccCCCCCCc-------eEEEEECCCCCcHHHHH
Confidence 46999999999999999999999999999999999999999999999987665443 46999999999999999
Q ss_pred HHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccc
Q psy2406 89 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTD 168 (464)
Q Consensus 89 r~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (464)
+++|+.++.+|+.+||+++.+...+ +.++|.
T Consensus 506 ~~la~~l~~~~~~i~~s~~~~~~~~----------------------------------------~~l~g~--------- 536 (758)
T 1r6b_X 506 VQLSKALGIELLRFDMSEYMERHTV----------------------------------------SRLIGA--------- 536 (758)
T ss_dssp HHHHHHHTCEEEEEEGGGCSSSSCC----------------------------------------SSSCCC---------
T ss_pred HHHHHHhcCCEEEEechhhcchhhH----------------------------------------hhhcCC---------
Confidence 9999999999999999998653211 123333
Q ss_pred cCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeHHHHHHHH
Q psy2406 169 FNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLL 248 (464)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (464)
||||. |+++++
T Consensus 537 -----------------------------------~~g~~-----g~~~~~----------------------------- 547 (758)
T 1r6b_X 537 -----------------------------------PPGYV-----GFDQGG----------------------------- 547 (758)
T ss_dssp -----------------------------------CSCSH-----HHHHTT-----------------------------
T ss_pred -----------------------------------CCCCc-----Cccccc-----------------------------
Confidence 46775 444432
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee-eeecCceeE
Q psy2406 249 IDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHIL 327 (464)
Q Consensus 249 ~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~-~~i~Tsnil 327 (464)
.++++++++ +++||||||||+++++ +++.||++||.+.+.... ..++..|++
T Consensus 548 -------------~l~~~~~~~-~~~vl~lDEi~~~~~~-------------~~~~Ll~~le~~~~~~~~g~~~~~~~~~ 600 (758)
T 1r6b_X 548 -------------LLTDAVIKH-PHAVLLLDEIEKAHPD-------------VFNILLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_dssp -------------HHHHHHHHC-SSEEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEETTTEEEECTTEE
T ss_pred -------------hHHHHHHhC-CCcEEEEeCccccCHH-------------HHHHHHHHhcCcEEEcCCCCEEecCCeE
Confidence 346778888 8999999999999754 788999999866554433 466778889
Q ss_pred eeccCCccccC------------C---------CCCchhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhc
Q psy2406 328 FIASGAFHLAK------------P---------SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATE 386 (464)
Q Consensus 328 ~I~ag~f~~~~------------p---------~~f~PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~ 386 (464)
+|+|++..... + ..|+|+|++|||.+|.|+||+.+++..|+. ..+.++...+...
T Consensus 601 iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~----~~l~~~~~~~~~~ 676 (758)
T 1r6b_X 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVD----KFIVELQVQLDQK 676 (758)
T ss_dssp EEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHH----HHHHHHHHHHHHT
T ss_pred EEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHH----HHHHHHHHHHHHC
Confidence 99887532100 0 158999999999999999999999999994 5667777778788
Q ss_pred CceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 387 GIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 387 gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
++.+.++++++++|++.++++ ++|||+|+++|++.+.+.+
T Consensus 677 ~~~~~~~~~a~~~l~~~~~~~-----~~g~R~l~~~i~~~~~~~l 716 (758)
T 1r6b_X 677 GVSLEVSQEARNWLAEKGYDR-----AMGARPMARVIQDNLKKPL 716 (758)
T ss_dssp TEEEEECHHHHHHHHHHHCBT-----TTBTTTHHHHHHHHHTHHH
T ss_pred CcEEEeCHHHHHHHHHhCCCc-----CCCchHHHHHHHHHHHHHH
Confidence 899999999999999999998 8999999999999887644
No 6
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.96 E-value=1.7e-29 Score=279.92 Aligned_cols=250 Identities=21% Similarity=0.268 Sum_probs=195.0
Q ss_pred ccCccccccchhhhhccCchhHhhhhhhcchhHHHHhhhhhcccccccCCCCCCccccccCCCcceEEEecCCCchHHHH
Q psy2406 9 NIGVKAVKIGTNACENAPSANNLRNKFGIRKAILKASVYIDAPNTRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIA 88 (464)
Q Consensus 9 ~~gi~~~k~~~~~~e~~~~~~~~l~~~~igq~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LA 88 (464)
-+|||+.++.+++.+++..+++.+...++||..+...+..++...+++..++++|. .++||+||||||||++|
T Consensus 466 ~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~-------~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 466 WTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPI-------GSFIFLGPTGVGKTELA 538 (758)
T ss_dssp TC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCS-------EEEEEESCTTSSHHHHH
T ss_pred HhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHcccCCCCCCc-------eEEEEECCCCCCHHHHH
Confidence 57999999999999999999999999999999999999999999998886655443 36999999999999999
Q ss_pred HHHHHHh---CCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q psy2406 89 RRLAKLS---NAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNL 165 (464)
Q Consensus 89 r~lA~~l---~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (464)
+++|+.+ +.||+.+||+.+.+..... .
T Consensus 539 ~ala~~l~~~~~~~i~i~~s~~~~~~~~~------------~-------------------------------------- 568 (758)
T 3pxi_A 539 RALAESIFGDEESMIRIDMSEYMEKHSTS------------G-------------------------------------- 568 (758)
T ss_dssp HHHHHHHHSCTTCEEEEEGGGGCSSCCCC---------------------------------------------------
T ss_pred HHHHHHhcCCCcceEEEechhcccccccc------------c--------------------------------------
Confidence 9999998 7899999999886432110 0
Q ss_pred ccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeHHHHH
Q psy2406 166 DTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAI 245 (464)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (464)
|
T Consensus 569 ------------------------------------------------~------------------------------- 569 (758)
T 3pxi_A 569 ------------------------------------------------G------------------------------- 569 (758)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------------------------c-------------------------------
Confidence 0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee-eeecCc
Q psy2406 246 KLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTD 324 (464)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~-~~i~Ts 324 (464)
.++++++++ +++||||||||++++. +|+.||++||.+.+.... ..++..
T Consensus 570 ----------------~l~~~~~~~-~~~vl~lDEi~~~~~~-------------~~~~Ll~~le~g~~~~~~g~~~~~~ 619 (758)
T 3pxi_A 570 ----------------QLTEKVRRK-PYSVVLLDAIEKAHPD-------------VFNILLQVLEDGRLTDSKGRTVDFR 619 (758)
T ss_dssp -----------------CHHHHHHC-SSSEEEEECGGGSCHH-------------HHHHHHHHHHHSBCC-----CCBCT
T ss_pred ----------------hhhHHHHhC-CCeEEEEeCccccCHH-------------HHHHHHHHhccCeEEcCCCCEeccC
Confidence 124566666 8999999999999754 788999999865554322 456788
Q ss_pred eeEeeccCCccccC--------CCCCchhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHH
Q psy2406 325 HILFIASGAFHLAK--------PSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDG 396 (464)
Q Consensus 325 nil~I~ag~f~~~~--------p~~f~PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeA 396 (464)
|+++|+|++..... ...|+|+|++|||.+|.|+||+.+++..|+. ..+.++.+.+...++.+.+++++
T Consensus 620 ~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~----~~l~~~~~~~~~~~~~~~~~~~a 695 (758)
T 3pxi_A 620 NTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVS----LMSDQLTKRLKEQDLSIELTDAA 695 (758)
T ss_dssp TCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHH----HHHHHHHHHHHTTTCEEEECHHH
T ss_pred CeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHH----HHHHHHHHHHHhCCCeEEECHHH
Confidence 89999987521110 0129999999999999999999999999994 56777777777779999999999
Q ss_pred HHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcc
Q psy2406 397 IQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN 433 (464)
Q Consensus 397 l~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~ 433 (464)
+++|++.+|++ .+|||+|+++|++.+...+.+
T Consensus 696 ~~~l~~~~~~~-----~~~~R~L~~~i~~~v~~~l~~ 727 (758)
T 3pxi_A 696 KAKVAEEGVDL-----EYGARPLRRAIQKHVEDRLSE 727 (758)
T ss_dssp HHHHHGGGCCT-----TTTTTTHHHHHHHHTHHHHHH
T ss_pred HHHHHHhCCCC-----CCCChHHHHHHHHHHHHHHHH
Confidence 99999999998 899999999999988877643
No 7
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.96 E-value=2e-29 Score=283.13 Aligned_cols=263 Identities=22% Similarity=0.216 Sum_probs=207.5
Q ss_pred ccCccccccchhhhhccCchhHhhhhhhcchhHHHHhhhhhcccccccCCCCCCccccccCCCcceEEEecCCCchHHHH
Q psy2406 9 NIGVKAVKIGTNACENAPSANNLRNKFGIRKAILKASVYIDAPNTRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIA 88 (464)
Q Consensus 9 ~~gi~~~k~~~~~~e~~~~~~~~l~~~~igq~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LA 88 (464)
-+|||+.++.+.+.++++.+++.+...++||..+...+...+...++++.++++|. .++||+||||||||++|
T Consensus 533 ~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~-------~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 533 WTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPI-------GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp TSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCS-------EEEEEBSCSSSSHHHHH
T ss_pred HhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhcccCCCCCCc-------eEEEEECCCCCCHHHHH
Confidence 57999999999999999999999999999999999999999999999987665443 46999999999999999
Q ss_pred HHHHHHh---CCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q psy2406 89 RRLAKLS---NAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNL 165 (464)
Q Consensus 89 r~lA~~l---~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (464)
++||+.+ +.+|+.++|+.+.+...+ +.|+|+
T Consensus 606 ~~la~~~~~~~~~~i~i~~~~~~~~~~~----------------------------------------s~l~g~------ 639 (854)
T 1qvr_A 606 KTLAATLFDTEEAMIRIDMTEYMEKHAV----------------------------------------SRLIGA------ 639 (854)
T ss_dssp HHHHHHHHSSGGGEEEECTTTCCSSGGG----------------------------------------GGC---------
T ss_pred HHHHHHhcCCCCcEEEEechhccchhHH----------------------------------------HHHcCC------
Confidence 9999999 789999999988643211 112222
Q ss_pred ccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeHHHHH
Q psy2406 166 DTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAI 245 (464)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (464)
||||.++ +++|
T Consensus 640 --------------------------------------~~~~~G~-----~~~g-------------------------- 650 (854)
T 1qvr_A 640 --------------------------------------PPGYVGY-----EEGG-------------------------- 650 (854)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------CCCCcCc-----cccc--------------------------
Confidence 3666533 3211
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeee-eeeeecCc
Q psy2406 246 KLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGIIKTD 324 (464)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~-~~~~i~Ts 324 (464)
.++++++++ +++||||||||++++. +++.||++||.+.+.. ....++..
T Consensus 651 ----------------~l~~~~~~~-~~~vl~lDEi~~l~~~-------------~~~~Ll~~l~~~~~~~~~g~~vd~~ 700 (854)
T 1qvr_A 651 ----------------QLTEAVRRR-PYSVILFDEIEKAHPD-------------VFNILLQILDDGRLTDSHGRTVDFR 700 (854)
T ss_dssp ----------------CHHHHHHHC-SSEEEEESSGGGSCHH-------------HHHHHHHHHTTTEECCSSSCCEECT
T ss_pred ----------------hHHHHHHhC-CCeEEEEecccccCHH-------------HHHHHHHHhccCceECCCCCEeccC
Confidence 236777777 8999999999999754 7889999999665543 23467788
Q ss_pred eeEeeccCCccc----c------------------CCCCCchhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHH
Q psy2406 325 HILFIASGAFHL----A------------------KPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEAL 382 (464)
Q Consensus 325 nil~I~ag~f~~----~------------------~p~~f~PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~l 382 (464)
|+++|+|++... . ....|+|+|++||+.++.|.||+.+++..|+. ..+.++...
T Consensus 701 ~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~----~~l~~~~~~ 776 (854)
T 1qvr_A 701 NTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVE----IQLSYLRAR 776 (854)
T ss_dssp TEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHH----HHHHHHHHH
T ss_pred CeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHH----HHHHHHHHH
Confidence 899999886410 0 12369999999999999999999999999994 567777777
Q ss_pred HhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhc
Q psy2406 383 LATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSF 432 (464)
Q Consensus 383 l~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~ 432 (464)
+...++.+.++++++++|++.++++ .+|||+|+++|++.+...+.
T Consensus 777 ~~~~~~~~~~~~~a~~~L~~~~~~~-----~gn~R~L~~~i~~~~~~~~~ 821 (854)
T 1qvr_A 777 LAEKRISLELTEAAKDFLAERGYDP-----VFGARPLRRVIQRELETPLA 821 (854)
T ss_dssp HHTTTCEEEECHHHHHHHHHHHCBT-----TTBTSTHHHHHHHHTHHHHH
T ss_pred HHhCCceEEECHHHHHHHHHcCCCC-----CCChHHHHHHHHHHHHHHHH
Confidence 7777889999999999999999987 79999999999998776553
No 8
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.95 E-value=3e-27 Score=232.06 Aligned_cols=253 Identities=21% Similarity=0.223 Sum_probs=192.5
Q ss_pred chhhhhccCchhHhhhhhhcchhHHHHhhhhhcccccccCCCCCCccccccCCCcceEEEecCCCchHHHHHHHHHHh--
Q psy2406 18 GTNACENAPSANNLRNKFGIRKAILKASVYIDAPNTRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIARRLAKLS-- 95 (464)
Q Consensus 18 ~~~~~e~~~~~~~~l~~~~igq~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LAr~lA~~l-- 95 (464)
++++.+++..+++.+.+.++||..+...+...+...+.++..+.+|. .++||+||||||||++|+++|+.+
T Consensus 1 l~~~~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-------~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 1 MLGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPI-------GSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp CHHHHHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCS-------EEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred CccHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCc-------eEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 35677888899999999999999999999999888887775444322 469999999999999999999998
Q ss_pred -CCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCccc
Q psy2406 96 -NAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENN 174 (464)
Q Consensus 96 -~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 174 (464)
+.+++.++++.+.... ....++|.+
T Consensus 74 ~~~~~~~~~~~~~~~~~----------------------------------------~~~~l~g~~-------------- 99 (311)
T 4fcw_A 74 TEEAMIRIDMTEYMEKH----------------------------------------AVSRLIGAP-------------- 99 (311)
T ss_dssp CGGGEEEEEGGGCCSTT----------------------------------------HHHHHHCCC--------------
T ss_pred CCcceEEeecccccccc----------------------------------------cHHHhcCCC--------------
Confidence 5679999998774211 011223332
Q ss_pred chhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhcCCCCccceeeeHHHHHHHHHHHHHH
Q psy2406 175 NISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEAN 254 (464)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (464)
|++.++...|
T Consensus 100 ------------------------------~~~~~~~~~~---------------------------------------- 109 (311)
T 4fcw_A 100 ------------------------------PGYVGYEEGG---------------------------------------- 109 (311)
T ss_dssp ------------------------------TTSTTTTTCC----------------------------------------
T ss_pred ------------------------------Cccccccccc----------------------------------------
Confidence 3333222111
Q ss_pred hcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeee-eeeecCceeEeeccCC
Q psy2406 255 KLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK-YGIIKTDHILFIASGA 333 (464)
Q Consensus 255 ~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~-~~~i~Tsnil~I~ag~ 333 (464)
.+++++..+ +++||||||||++.+. +|+.||++|+...+... ...++.+|+++|+|++
T Consensus 110 -------~~~~~~~~~-~~~vl~lDEi~~l~~~-------------~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn 168 (311)
T 4fcw_A 110 -------QLTEAVRRR-PYSVILFDAIEKAHPD-------------VFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSN 168 (311)
T ss_dssp -------HHHHHHHHC-SSEEEEEETGGGSCHH-------------HHHHHHHHHHHSEEECTTSCEEECTTEEEEEEES
T ss_pred -------hHHHHHHhC-CCeEEEEeChhhcCHH-------------HHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecc
Confidence 235566667 7899999999999753 78899999986654432 2456777888999876
Q ss_pred ccc-------------cC---------CCCCchhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeE
Q psy2406 334 FHL-------------AK---------PSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIE 391 (464)
Q Consensus 334 f~~-------------~~---------p~~f~PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~ 391 (464)
... .. ...|+|+|++||+.++.|.||+.+++..|+. ..++++...+...+..+.
T Consensus 169 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~----~~l~~~~~~~~~~~~~~~ 244 (311)
T 4fcw_A 169 LGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVE----IQMSYLRARLAEKRISLE 244 (311)
T ss_dssp TTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHH----HHTHHHHHHHHTTTCEEE
T ss_pred cCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHH----HHHHHHHHHHHhCCcEEE
Confidence 410 00 2258999999999999999999999999994 566666666766788999
Q ss_pred eCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 392 FVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 392 ~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
++++++++|++.++++ .+|+|.|++++++.+...+
T Consensus 245 ~~~~~~~~l~~~~~~~-----~gn~R~L~~~i~~~~~~~~ 279 (311)
T 4fcw_A 245 LTEAAKDFLAERGYDP-----VFGARPLRRVIQRELETPL 279 (311)
T ss_dssp ECHHHHHHHHHHSCBT-----TTBTTTHHHHHHHHTHHHH
T ss_pred eCHHHHHHHHHhCCCc-----cCCchhHHHHHHHHHHHHH
Confidence 9999999999999875 6999999999998877544
No 9
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5e-25 Score=228.73 Aligned_cols=207 Identities=18% Similarity=0.251 Sum_probs=154.0
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 149 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~ 149 (464)
.|+|+|||||||||||+||+++|.++++||+.++++++. ..|+|+. +..++++|..|
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~-sk~vGes-e~~vr~lF~~A--------------------- 237 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV-QKYIGEG-SRMVRELFVMA--------------------- 237 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS-CSSTTHH-HHHHHHHHHHH---------------------
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh-ccccchH-HHHHHHHHHHH---------------------
Confidence 568999999999999999999999999999999999997 5688874 66677776653
Q ss_pred HHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhc
Q psy2406 150 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 229 (464)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 229 (464)
T Consensus 238 -------------------------------------------------------------------------------- 237 (405)
T 4b4t_J 238 -------------------------------------------------------------------------------- 237 (405)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCC-CCCcchhhHHHhhhcc
Q psy2406 230 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPL 308 (464)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~-~~d~~~~gvq~~LLql 308 (464)
.+. .||||||||||++++.+...+ +.+.....+...||..
T Consensus 238 -------------------------------------r~~--aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~ 278 (405)
T 4b4t_J 238 -------------------------------------REH--APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQ 278 (405)
T ss_dssp -------------------------------------HHT--CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHH
T ss_pred -------------------------------------HHh--CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHh
Confidence 112 589999999999998876422 2222233456678888
Q ss_pred ccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc--cCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhc
Q psy2406 309 VEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATE 386 (464)
Q Consensus 309 LEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~--R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~ 386 (464)
|||.. ...++++|+|| ++|+.++|+|++ |||..|.|+.++.+++.+|++. . +.
T Consensus 279 lDg~~--------~~~~V~vIaAT----Nrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~----~-------~~-- 333 (405)
T 4b4t_J 279 LDGFE--------TSKNIKIIMAT----NRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRI----H-------SR-- 333 (405)
T ss_dssp HHTTT--------CCCCEEEEEEE----SCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHH----H-------HT--
T ss_pred hhccC--------CCCCeEEEecc----CChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHH----H-------hc--
Confidence 88732 35678889987 589999999986 9999999999999999999842 1 11
Q ss_pred CceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHhCCCC
Q psy2406 387 GIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGDLS 454 (464)
Q Consensus 387 gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~~~~~ 454 (464)
+..+. ++--++.||+... ++.++.|..++.......+. .+...|+.++++.++.+++
T Consensus 334 ~~~l~-~dvdl~~lA~~t~-------G~SGADi~~l~~eA~~~Air---~~~~~vt~~Df~~Al~~v~ 390 (405)
T 4b4t_J 334 KMNLT-RGINLRKVAEKMN-------GCSGADVKGVCTEAGMYALR---ERRIHVTQEDFELAVGKVM 390 (405)
T ss_dssp TSBCC-SSCCHHHHHHHCC-------SCCHHHHHHHHHHHHHHHHH---TTCSBCCHHHHHHHHHHHH
T ss_pred CCCCC-ccCCHHHHHHHCC-------CCCHHHHHHHHHHHHHHHHH---cCCCCcCHHHHHHHHHHHh
Confidence 22222 1112778888774 46667899888765443332 2335789999988876554
No 10
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.6e-24 Score=223.36 Aligned_cols=216 Identities=18% Similarity=0.217 Sum_probs=150.4
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 149 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~ 149 (464)
.|+|+|||||||||||+||+++|.+++++|+.++++++. ..|+|+. +..++.+|..|
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~-sk~vGes-ek~ir~lF~~A--------------------- 298 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV-QKYVGEG-ARMVRELFEMA--------------------- 298 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC-CCSSSHH-HHHHHHHHHHH---------------------
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh-cccCCHH-HHHHHHHHHHH---------------------
Confidence 679999999999999999999999999999999999997 4688874 56666666553
Q ss_pred HHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhc
Q psy2406 150 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 229 (464)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 229 (464)
T Consensus 299 -------------------------------------------------------------------------------- 298 (467)
T 4b4t_H 299 -------------------------------------------------------------------------------- 298 (467)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCC-CCCcchhhHHHhhhcc
Q psy2406 230 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPL 308 (464)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~-~~d~~~~gvq~~LLql 308 (464)
... .||||||||||.++..+.... +.+.....+...||..
T Consensus 299 -------------------------------------r~~--aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~ 339 (467)
T 4b4t_H 299 -------------------------------------RTK--KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQ 339 (467)
T ss_dssp -------------------------------------HHT--CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHH
T ss_pred -------------------------------------Hhc--CCceEeecccccccccccCcCCCccHHHHHHHHHHHHH
Confidence 122 589999999999998876522 2222222345567777
Q ss_pred ccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc--cCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhc
Q psy2406 309 VEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATE 386 (464)
Q Consensus 309 LEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~--R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~ 386 (464)
|||. -..+++++|+|| ++|+.++|+|++ |||..|.|..++.+++.+|++. . +...
T Consensus 340 lDg~--------~~~~~ViVIaAT----Nrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~----~-------l~~~ 396 (467)
T 4b4t_H 340 LDGF--------DPRGNIKVMFAT----NRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRI----H-------SKSM 396 (467)
T ss_dssp HHSS--------CCTTTEEEEEEC----SCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHH----H-------HTTS
T ss_pred hhcc--------CCCCcEEEEeCC----CCcccCChhhhccccccEEEEeCCcCHHHHHHHHHH----H-------hcCC
Confidence 7763 245678899987 589999999986 9999999999999999999852 1 2211
Q ss_pred CceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHhCCCC----CCCCCCCc
Q psy2406 387 GIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGDLS----INEDLSRY 462 (464)
Q Consensus 387 gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~~~~~----~~~d~~~~ 462 (464)
.+.-.+ -++.||+.+. ++.++.|++++.......+.+ ..-.|+.+++..++.+++ ..++..+|
T Consensus 397 ~l~~dv---dl~~LA~~T~-------GfSGADI~~l~~eAa~~Air~---~~~~it~~Df~~Al~kV~~g~~k~s~~~~y 463 (467)
T 4b4t_H 397 SVERGI---RWELISRLCP-------NSTGAELRSVCTEAGMFAIRA---RRKVATEKDFLKAVDKVISGYKKFSSTSRY 463 (467)
T ss_dssp CBCSSC---CHHHHHHHCC-------SCCHHHHHHHHHHHHHHHHHH---TCSSBCHHHHHHHHHHHHHHHCC-------
T ss_pred CCCCCC---CHHHHHHHCC-------CCCHHHHHHHHHHHHHHHHHc---CCCccCHHHHHHHHHHHhcCcccchhHHHH
Confidence 221112 2678888774 456677888887654433322 223688888887766543 33556666
Q ss_pred C
Q psy2406 463 V 463 (464)
Q Consensus 463 ~ 463 (464)
+
T Consensus 464 ~ 464 (467)
T 4b4t_H 464 M 464 (467)
T ss_dssp -
T ss_pred H
Confidence 4
No 11
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=8.5e-24 Score=221.63 Aligned_cols=207 Identities=20% Similarity=0.237 Sum_probs=151.3
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 149 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~ 149 (464)
.|+|+|||||||||||+||+++|.++++||+.++++++. ..|+|+. +..++.+|..|
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~-~~~vGes-e~~ir~lF~~A--------------------- 270 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV-QMYIGEG-AKLVRDAFALA--------------------- 270 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC-SSCSSHH-HHHHHHHHHHH---------------------
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh-hcccchH-HHHHHHHHHHH---------------------
Confidence 578999999999999999999999999999999999997 5688874 56667666553
Q ss_pred HHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhc
Q psy2406 150 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 229 (464)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 229 (464)
T Consensus 271 -------------------------------------------------------------------------------- 270 (434)
T 4b4t_M 271 -------------------------------------------------------------------------------- 270 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCC-CCCcchhhHHHhhhcc
Q psy2406 230 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPL 308 (464)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~-~~d~~~~gvq~~LLql 308 (464)
... .||||||||||.+++.+.+.. +.+.....+...||..
T Consensus 271 -------------------------------------~~~--aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ 311 (434)
T 4b4t_M 271 -------------------------------------KEK--APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQ 311 (434)
T ss_dssp -------------------------------------HHH--CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHH
T ss_pred -------------------------------------Hhc--CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHH
Confidence 122 589999999999998876422 1111122345578888
Q ss_pred ccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc--cCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhc
Q psy2406 309 VEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATE 386 (464)
Q Consensus 309 LEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~--R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~ 386 (464)
|||.. ..+++++|+|| ++|+.++|+|++ |||..|.|+.++.+++.+|++. .++ ..
T Consensus 312 ldg~~--------~~~~ViVIaaT----Nrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~----~~~-------~~ 368 (434)
T 4b4t_M 312 LDGFS--------SDDRVKVLAAT----NRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQI----HSR-------KM 368 (434)
T ss_dssp HTTSC--------SSCSSEEEEEC----SSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHH----HHH-------HS
T ss_pred hhccC--------CCCCEEEEEeC----CCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHH----Hhc-------CC
Confidence 88742 34578889987 589999999976 9999999999999999999852 221 11
Q ss_pred CceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHhCCCC
Q psy2406 387 GIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGDLS 454 (464)
Q Consensus 387 gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~~~~~ 454 (464)
...-.+ -++.||+.+. ++.++.|+.++.......+.+ ....|+.+++..++.++.
T Consensus 369 ~~~~dv---dl~~lA~~t~-------G~sGADi~~l~~eA~~~a~r~---~~~~i~~~Df~~Al~~v~ 423 (434)
T 4b4t_M 369 TTDDDI---NWQELARSTD-------EFNGAQLKAVTVEAGMIALRN---GQSSVKHEDFVEGISEVQ 423 (434)
T ss_dssp CBCSCC---CHHHHHHHCS-------SCCHHHHHHHHHHHHHHHHHH---TCSSBCHHHHHHHHHSCS
T ss_pred CCCCcC---CHHHHHHhCC-------CCCHHHHHHHHHHHHHHHHHc---CCCCcCHHHHHHHHHHHh
Confidence 111112 2678888774 456677998887654443322 224689999988876654
No 12
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.2e-24 Score=222.42 Aligned_cols=205 Identities=18% Similarity=0.248 Sum_probs=151.0
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 149 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~ 149 (464)
.|+++|||||||||||+||+++|.+++++|+.++++++. ..|+|+. +..++.+|..|
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~-sk~vGes-ek~ir~lF~~A--------------------- 271 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI-QKYLGDG-PRLCRQIFKVA--------------------- 271 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC-CSSSSHH-HHHHHHHHHHH---------------------
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh-hccCchH-HHHHHHHHHHH---------------------
Confidence 569999999999999999999999999999999999997 4688864 66667666553
Q ss_pred HHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhc
Q psy2406 150 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 229 (464)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 229 (464)
T Consensus 272 -------------------------------------------------------------------------------- 271 (437)
T 4b4t_I 272 -------------------------------------------------------------------------------- 271 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCC-CCCcchhhHHHhhhcc
Q psy2406 230 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPL 308 (464)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~-~~d~~~~gvq~~LLql 308 (464)
.+. .||||||||||.+++.+...+ +.+.....+...||..
T Consensus 272 -------------------------------------r~~--aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~ 312 (437)
T 4b4t_I 272 -------------------------------------GEN--APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ 312 (437)
T ss_dssp -------------------------------------HHT--CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHH
T ss_pred -------------------------------------Hhc--CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHH
Confidence 122 589999999999999886532 2222223345567777
Q ss_pred ccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc--cCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhc
Q psy2406 309 VEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATE 386 (464)
Q Consensus 309 LEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~--R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~ 386 (464)
|||. -..+++++|+|| +.|+.++|+|++ |||..|.|..++.+++.+|++. . +.
T Consensus 313 lDg~--------~~~~~ViVIaAT----Nrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~----~-------l~-- 367 (437)
T 4b4t_I 313 LDGF--------DDRGDVKVIMAT----NKIETLDPALIRPGRIDRKILFENPDLSTKKKILGI----H-------TS-- 367 (437)
T ss_dssp HHHC--------CCSSSEEEEEEE----SCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHH----H-------HT--
T ss_pred hhCc--------CCCCCEEEEEeC----CChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHH----H-------hc--
Confidence 7753 245678899987 589999999996 9999999999999999999852 1 22
Q ss_pred CceeEeCHH-HHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHhCCC
Q psy2406 387 GIKIEFVDD-GIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGDL 453 (464)
Q Consensus 387 gi~L~~sde-Al~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~~~~ 453 (464)
+.. ++++ -++.||+... ++.++.|.+++.......+.+ ....|+.++++.++.++
T Consensus 368 ~~~--l~~dvdl~~LA~~T~-------GfSGADI~~l~~eA~~~Air~---~~~~It~eDf~~Al~rv 423 (437)
T 4b4t_I 368 KMN--LSEDVNLETLVTTKD-------DLSGADIQAMCTEAGLLALRE---RRMQVTAEDFKQAKERV 423 (437)
T ss_dssp TSC--BCSCCCHHHHHHHCC-------SCCHHHHHHHHHHHHHHHHHT---TCSCBCHHHHHHHHHHH
T ss_pred CCC--CCCcCCHHHHHHhCC-------CCCHHHHHHHHHHHHHHHHHc---CCCccCHHHHHHHHHHH
Confidence 222 2222 2778888774 456678988887654443322 33568999998776544
No 13
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=8.4e-24 Score=221.83 Aligned_cols=208 Identities=20% Similarity=0.213 Sum_probs=151.0
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 149 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~ 149 (464)
.|+|+|||||||||||+||+++|.++++||+.++++++. ..|+|+. +..++.+|..|
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~-sk~~Ges-e~~ir~~F~~A--------------------- 270 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIV-DKYIGES-ARIIREMFAYA--------------------- 270 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTC-CSSSSHH-HHHHHHHHHHH---------------------
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhc-cccchHH-HHHHHHHHHHH---------------------
Confidence 568999999999999999999999999999999999997 4688864 55666665553
Q ss_pred HHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhc
Q psy2406 150 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 229 (464)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 229 (464)
T Consensus 271 -------------------------------------------------------------------------------- 270 (437)
T 4b4t_L 271 -------------------------------------------------------------------------------- 270 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCC-CCCcchhhHHHhhhcc
Q psy2406 230 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPL 308 (464)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~-~~d~~~~gvq~~LLql 308 (464)
.. ..||||||||||.+++.+.+.+ ..+.....+...||..
T Consensus 271 -------------------------------------~~--~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~ 311 (437)
T 4b4t_L 271 -------------------------------------KE--HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQ 311 (437)
T ss_dssp -------------------------------------HH--SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHH
T ss_pred -------------------------------------Hh--cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHH
Confidence 11 2589999999999998876522 2222223456678888
Q ss_pred ccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhh--ccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhc
Q psy2406 309 VEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATE 386 (464)
Q Consensus 309 LEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl--~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~ 386 (464)
|||.. ..+++++|+|| ++|+.++|+|+ +|||..|.|+.++.+++.+|++. .+ ...
T Consensus 312 lDg~~--------~~~~vivI~AT----Nrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~----~~-------~~~ 368 (437)
T 4b4t_L 312 MDGFD--------NLGQTKIIMAT----NRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKI----HT-------AKV 368 (437)
T ss_dssp HHSSS--------CTTSSEEEEEE----SSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHH----HH-------HTS
T ss_pred hhccc--------CCCCeEEEEec----CCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHH----Hh-------cCC
Confidence 88732 35678889987 58999999997 56999999999999999999852 21 111
Q ss_pred CceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHhCCCCC
Q psy2406 387 GIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGDLSI 455 (464)
Q Consensus 387 gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~~~~~~ 455 (464)
...-.+ -++.||+.+. ++.++.|++++.......+.+ ..-.|+.+++..++.++..
T Consensus 369 ~~~~d~---dl~~lA~~t~-------G~sGADi~~l~~eA~~~air~---~~~~i~~~d~~~Al~~v~~ 424 (437)
T 4b4t_L 369 KKTGEF---DFEAAVKMSD-------GFNGADIRNCATEAGFFAIRD---DRDHINPDDLMKAVRKVAE 424 (437)
T ss_dssp CBCSCC---CHHHHHHTCC-------SCCHHHHHHHHHHHHHHHHHT---TCSSBCHHHHHHHHHHHHH
T ss_pred CCCccc---CHHHHHHhCC-------CCCHHHHHHHHHHHHHHHHHc---CCCCCCHHHHHHHHHHHHh
Confidence 211112 2678887764 466778998887654433322 2246899999887765543
No 14
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.2e-23 Score=218.25 Aligned_cols=206 Identities=17% Similarity=0.263 Sum_probs=151.7
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 149 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~ 149 (464)
.|+|+|||||||||||++|+++|.+++++|+.++++++. ..|+|+. +..++++|..|
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~-~~~~Ge~-e~~ir~lF~~A--------------------- 261 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV-HKYLGEG-PRMVRDVFRLA--------------------- 261 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC-CSSCSHH-HHHHHHHHHHH---------------------
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhh-ccccchh-HHHHHHHHHHH---------------------
Confidence 568999999999999999999999999999999999986 5688864 56666666553
Q ss_pred HHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhc
Q psy2406 150 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 229 (464)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 229 (464)
T Consensus 262 -------------------------------------------------------------------------------- 261 (428)
T 4b4t_K 262 -------------------------------------------------------------------------------- 261 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCC-CCCcchhhHHHhhhcc
Q psy2406 230 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPL 308 (464)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~-~~d~~~~gvq~~LLql 308 (464)
... .||||||||||++++.+.+.. +.+.....+...||..
T Consensus 262 -------------------------------------~~~--aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ 302 (428)
T 4b4t_K 262 -------------------------------------REN--APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQ 302 (428)
T ss_dssp -------------------------------------HHT--CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHH
T ss_pred -------------------------------------HHc--CCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHH
Confidence 122 589999999999998876432 2232333466788888
Q ss_pred ccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc--cCCeEEEcC-CCCHHHHHHHHHhhHHHHHHHHHHHHhh
Q psy2406 309 VEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIRVELD-SLSISDFTRIMTSTNVCLTKQYEALLAT 385 (464)
Q Consensus 309 LEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~--R~d~iV~f~-~Lt~~el~~Il~~~~~~ll~~~~~ll~~ 385 (464)
|||. -..+++++|+|| ++|+.++|+|++ |||..|.|+ +++.+++..|++. . +.
T Consensus 303 ldg~--------~~~~~v~vI~aT----N~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~----~-------~~- 358 (428)
T 4b4t_K 303 MDGF--------DQSTNVKVIMAT----NRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGT----I-------AS- 358 (428)
T ss_dssp HHHS--------CSSCSEEEEEEE----SCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHH----H-------HH-
T ss_pred hhCC--------CCCCCEEEEEec----CChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHH----H-------hc-
Confidence 8873 245678899987 589999999985 999999995 7899999998842 2 22
Q ss_pred cCceeEeCHH-HHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHhCCCC
Q psy2406 386 EGIKIEFVDD-GIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGDLS 454 (464)
Q Consensus 386 ~gi~L~~sde-Al~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~~~~~ 454 (464)
+.. ++++ -++.||+.+. ++.++.|..++.......+.+ +...|+.++++.++...+
T Consensus 359 -~~~--l~~~~dl~~lA~~t~-------G~sgadi~~l~~eA~~~a~r~---~~~~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 359 -KMS--LAPEADLDSLIIRND-------SLSGAVIAAIMQEAGLRAVRK---NRYVILQSDLEEAYATQV 415 (428)
T ss_dssp -SSC--BCTTCCHHHHHHHTT-------TCCHHHHHHHHHHHHHHHHHT---TCSSBCHHHHHHHHHHHS
T ss_pred -CCC--CCcccCHHHHHHHCC-------CCCHHHHHHHHHHHHHHHHHC---CCCCCCHHHHHHHHHHhh
Confidence 222 2222 2788888875 456678998887654433322 234689999988765544
No 15
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.88 E-value=4e-22 Score=214.04 Aligned_cols=164 Identities=15% Similarity=0.219 Sum_probs=116.0
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceee-ee--e--eeecCceeEeeccCCccccCCCCCchhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN-TK--Y--GIIKTDHILFIASGAFHLAKPSDLIPEL 346 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~-~~--~--~~i~Tsnil~I~ag~f~~~~p~~f~PEf 346 (464)
..+|+||||||++++...+ ..++.||++||+.... +. + ..++.+++++|+|+ +.+..++|+|
T Consensus 175 ~~~vl~lDEid~l~~~~~~---------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~tt----N~~~~l~~aL 241 (543)
T 3m6a_A 175 LNPVFLLDEIDKMSSDFRG---------DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATA----NNLATIPGPL 241 (543)
T ss_dssp SSEEEEEEESSSCC------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEEC----SSTTTSCHHH
T ss_pred cCCEEEEhhhhhhhhhhcc---------CHHHHHHHHHhhhhcceeecccCCeeecccceEEEecc----CccccCCHHH
Confidence 3459999999999876432 2567899999854321 21 1 24566889999987 4577899999
Q ss_pred hccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHH
Q psy2406 347 QGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 426 (464)
Q Consensus 347 l~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~ 426 (464)
++||+ +|.|++|+.+++..|+. ..++.++.+........+.++++++.+|++. |.. .+|+|.|++.|+++
T Consensus 242 ~~R~~-vi~~~~~~~~e~~~Il~---~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~-~~~-----~~~vR~L~~~i~~~ 311 (543)
T 3m6a_A 242 RDRME-IINIAGYTEIEKLEIVK---DHLLPKQIKEHGLKKSNLQLRDQAILDIIRY-YTR-----EAGVRSLERQLAAI 311 (543)
T ss_dssp HHHEE-EEECCCCCHHHHHHHHH---HTHHHHHHHHTTCCGGGCEECHHHHHHHHHH-HCC-----CSSSHHHHHHHHHH
T ss_pred Hhhcc-eeeeCCCCHHHHHHHHH---HHHHHHHHHHcCCCcccccCCHHHHHHHHHh-CCh-----hhchhHHHHHHHHH
Confidence 99996 68999999999999996 3344433332222223789999999999984 443 58999999999998
Q ss_pred HHHHhcccCC---CceeecHHHHHhHhCCCCCCCC
Q psy2406 427 LEEVSFNSNN---ISLLVDADYVNSRLGDLSINED 458 (464)
Q Consensus 427 l~~~l~~~~~---~~v~I~~e~v~~~~~~~~~~~d 458 (464)
+......... ..+.||.++++++++......+
T Consensus 312 ~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~~~~~e 346 (543)
T 3m6a_A 312 CRKAAKAIVAEERKRITVTEKNLQDFIGKRIFRYG 346 (543)
T ss_dssp HHHHHHHHHTTCCSCCEECTTTTHHHHCSCCSCCS
T ss_pred HHHHHHHHHhcCCcceecCHHHHHHHhCCcccCch
Confidence 8876554322 2378999999999988766554
No 16
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.86 E-value=2.3e-22 Score=224.36 Aligned_cols=218 Identities=16% Similarity=0.223 Sum_probs=122.3
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 149 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~ 149 (464)
.|+++||+||||||||++|+++|.+++.||+.++++++. +.|+|+. +..++.+|+.|
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~-s~~vGes-e~~vr~lF~~A--------------------- 566 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL-TMWFGES-EANVREIFDKA--------------------- 566 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHH-TTTCSSC-HHHHHHHHHHH---------------------
T ss_pred CCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhh-ccccchH-HHHHHHHHHHH---------------------
Confidence 568999999999999999999999999999999999987 5699986 56677777663
Q ss_pred HHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhc
Q psy2406 150 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 229 (464)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 229 (464)
T Consensus 567 -------------------------------------------------------------------------------- 566 (806)
T 3cf2_A 567 -------------------------------------------------------------------------------- 566 (806)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCC-CCCcchhhHHHhhhcc
Q psy2406 230 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPL 308 (464)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~-~~d~~~~gvq~~LLql 308 (464)
+.. .||||||||||++++.++.+. +.+...+.+.+.||+.
T Consensus 567 --------------------------------------r~~-~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~ 607 (806)
T 3cf2_A 567 --------------------------------------RQA-APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTE 607 (806)
T ss_dssp --------------------------------------HTT-CSEEEECSCGGGCC--------------CHHHHHHHHH
T ss_pred --------------------------------------HHc-CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHH
Confidence 112 589999999999998876422 2222233578899999
Q ss_pred ccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc--cCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhc
Q psy2406 309 VEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATE 386 (464)
Q Consensus 309 LEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~--R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~ 386 (464)
|||.. ..+++++|+|| ++|+.++|++++ |||.+|.|..++.+++.+|++. .+ +
T Consensus 608 mdg~~--------~~~~V~vi~aT----N~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~----~l---------~ 662 (806)
T 3cf2_A 608 MDGMS--------TKKNVFIIGAT----NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKA----NL---------R 662 (806)
T ss_dssp HHSSC--------SSSSEEEECC-----CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTT----TS---------S
T ss_pred HhCCC--------CCCCEEEEEeC----CCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHH----Hh---------c
Confidence 99842 34578888887 589999999997 9999999999999999999852 11 1
Q ss_pred CceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccCC----------------------CceeecHH
Q psy2406 387 GIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNN----------------------ISLLVDAD 444 (464)
Q Consensus 387 gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~----------------------~~v~I~~e 444 (464)
+..+. ++--++.||+.... +.+..|..++.......+.+... ....|+.+
T Consensus 663 ~~~~~-~~~dl~~la~~t~g-------~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 734 (806)
T 3cf2_A 663 KSPVA-KDVDLEFLAKMTNG-------FSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRD 734 (806)
T ss_dssp CC--C-CC-----------------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----
T ss_pred CCCCC-CCCCHHHHHHhCCC-------CCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHH
Confidence 22221 11225677776643 33345666665543322221100 00346777
Q ss_pred HHHhHh---CCCCCCCCCCCc
Q psy2406 445 YVNSRL---GDLSINEDLSRY 462 (464)
Q Consensus 445 ~v~~~~---~~~~~~~d~~~~ 462 (464)
+++.++ .+.+...|+.+|
T Consensus 735 df~~al~~~~pSvs~~~l~~y 755 (806)
T 3cf2_A 735 HFEEAMRFARRSVSDNDIRKY 755 (806)
T ss_dssp CCTTTC---------------
T ss_pred HHHHHHHhCCCCCCHHHHHHH
Confidence 665554 334667778777
No 17
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.85 E-value=5.5e-21 Score=191.07 Aligned_cols=123 Identities=15% Similarity=0.298 Sum_probs=90.1
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.++||||||||.+.+.+.. ...+ ....+++.||..|+|... ...++++|+++ +.|+.++|++++||+
T Consensus 110 ~~~vl~iDEid~l~~~~~~-~~~~-~~~~~~~~ll~~l~~~~~-------~~~~v~vi~at----n~~~~ld~al~~Rf~ 176 (322)
T 3eie_A 110 KPSIIFIDQVDALTGTRGE-GESE-ASRRIKTELLVQMNGVGN-------DSQGVLVLGAT----NIPWQLDSAIRRRFE 176 (322)
T ss_dssp SSEEEEEECGGGGSCC-------C-CTHHHHHHHHHHHGGGGT-------SCCCEEEEEEE----SCGGGSCHHHHHHCC
T ss_pred CCeEEEechhhhhhccCCC-Ccch-HHHHHHHHHHHHhccccc-------cCCceEEEEec----CChhhCCHHHHcccC
Confidence 5899999999999887643 1122 234577789988886321 34567888886 467789999999999
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 427 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l 427 (464)
..+.|.+++.+++.+|++. .+. +..+.+++..++.||+... ++.++.|..++....
T Consensus 177 ~~i~~~~p~~~~r~~il~~-----------~~~--~~~~~~~~~~l~~la~~t~-------g~sg~di~~l~~~a~ 232 (322)
T 3eie_A 177 RRIYIPLPDLAARTTMFEI-----------NVG--DTPCVLTKEDYRTLGAMTE-------GYSGSDIAVVVKDAL 232 (322)
T ss_dssp EEEECCCCCHHHHHHHHHH-----------HHT--TCCCCCCHHHHHHHHHTTT-------TCCHHHHHHHHHHHT
T ss_pred eEEEeCCCCHHHHHHHHHH-----------Hhc--cCCCCCCHHHHHHHHHHcC-------CCCHHHHHHHHHHHH
Confidence 9999999999999999841 222 3445678999999998874 456678888886543
No 18
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.84 E-value=9.4e-20 Score=183.00 Aligned_cols=125 Identities=18% Similarity=0.294 Sum_probs=93.7
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.++||||||||.+++.+... ..+ ....+++.||..|+|... ...++++|+++ +.|+.++|++++||+
T Consensus 105 ~~~vl~iDEid~l~~~~~~~-~~~-~~~~~~~~ll~~ld~~~~-------~~~~v~vI~at----n~~~~ld~al~rRf~ 171 (322)
T 1xwi_A 105 KPSIIFIDEIDSLCGSRSEN-ESE-AARRIKTEFLVQMQGVGV-------DNDGILVLGAT----NIPWVLDSAIRRRFE 171 (322)
T ss_dssp SSEEEEEETTTGGGCCSSSC-CTT-HHHHHHHHHHHHHHCSSS-------CCTTEEEEEEE----SCTTTSCHHHHHTCC
T ss_pred CCcEEEeecHHHhccccccc-cch-HHHHHHHHHHHHHhcccc-------cCCCEEEEEec----CCcccCCHHHHhhcC
Confidence 58999999999998876541 112 233567788888887421 34678888887 578889999999999
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 429 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~ 429 (464)
.++.+++++.+++.+|++ ..+. +..+.+++..++.||+.+. ++.++.|..++......
T Consensus 172 ~~i~i~~P~~~~r~~il~-----------~~l~--~~~~~l~~~~l~~la~~t~-------G~sgadl~~l~~~A~~~ 229 (322)
T 1xwi_A 172 KRIYIPLPEPHARAAMFK-----------LHLG--TTQNSLTEADFRELGRKTD-------GYSGADISIIVRDALMQ 229 (322)
T ss_dssp EEEECCCCCHHHHHHHHH-----------HHHT--TCCBCCCHHHHHHHHHTCT-------TCCHHHHHHHHHHHHTH
T ss_pred eEEEeCCcCHHHHHHHHH-----------HHHh--cCCCCCCHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHH
Confidence 999999999999999984 1222 3344678999999998764 46677888888765543
No 19
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.84 E-value=2.1e-20 Score=190.09 Aligned_cols=127 Identities=14% Similarity=0.263 Sum_probs=91.0
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.++||||||||.+.+.+.. .. ......+++.||..|+|... ...++++|+++ +.|+.++|++++||+
T Consensus 143 ~~~vl~iDEid~l~~~r~~-~~-~~~~~~~~~~ll~~l~~~~~-------~~~~v~vI~at----n~~~~ld~al~rRf~ 209 (355)
T 2qp9_X 143 KPSIIFIDQVDALTGTRGE-GE-SEASRRIKTELLVQMNGVGN-------DSQGVLVLGAT----NIPWQLDSAIRRRFE 209 (355)
T ss_dssp SSEEEEEECGGGGTC--------CTHHHHHHHHHHHHHHHCC----------CCEEEEEEE----SCGGGSCHHHHHTCC
T ss_pred CCeEEEEechHhhcccCCC-Cc-chHHHHHHHHHHHHhhcccc-------cCCCeEEEeec----CCcccCCHHHHcccC
Confidence 5899999999999877543 11 12234567788988886321 23567888886 467789999999999
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
..+.|.+++.+++.+|++ ..+. +..+.+++..++.||+.+. ++-+|.|..++...+...+
T Consensus 210 ~~i~i~~P~~~~r~~il~-----------~~l~--~~~~~~~~~~l~~la~~t~-------G~sg~dl~~l~~~A~~~a~ 269 (355)
T 2qp9_X 210 RRIYIPLPDLAARTTMFE-----------INVG--DTPSVLTKEDYRTLGAMTE-------GYSGSDIAVVVKDALMQPI 269 (355)
T ss_dssp EEEECCCCCHHHHHHHHH-----------HHHT--TSCBCCCHHHHHHHHHHTT-------TCCHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCcCHHHHHHHHH-----------HHHh--hCCCCCCHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHH
Confidence 999999999999999984 2222 2334678999999998874 4567889998887655443
No 20
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.81 E-value=1.7e-19 Score=201.26 Aligned_cols=180 Identities=21% Similarity=0.319 Sum_probs=134.7
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCceeeccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 149 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~~s~~~~~~~~~~~~~~~~~~~~~ 149 (464)
.|++|||+||||||||+|||++|+++|++|+.++++++. ..|+|+. +..++.+|+.|
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~-sk~~ges-e~~lr~lF~~A--------------------- 293 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGES-ESNLRKAFEEA--------------------- 293 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH-SSCTTHH-HHHHHHHHHHH---------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh-cccchHH-HHHHHHHHHHH---------------------
Confidence 679999999999999999999999999999999999886 4577753 45555555442
Q ss_pred HHHHHHhCCCCCCCCCccccCCcccchhHHHHHHHHHhcCCCCCcEEEEEecCCCCcccccCCcchHHHHHHHHHHhhhc
Q psy2406 150 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 229 (464)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 229 (464)
T Consensus 294 -------------------------------------------------------------------------------- 293 (806)
T 3cf2_A 294 -------------------------------------------------------------------------------- 293 (806)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceeeeHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccc
Q psy2406 230 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV 309 (464)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eAv~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlL 309 (464)
.+ ..||||||||||.+++.+.+. ..+ ....+.+.||..|
T Consensus 294 -------------------------------------~~--~~PsIIfIDEiDal~~~r~~~-~~~-~~~riv~~LL~~m 332 (806)
T 3cf2_A 294 -------------------------------------EK--NAPAIIFIDELDAIAPKREKT-HGE-VERRIVSQLLTLM 332 (806)
T ss_dssp -------------------------------------TT--SCSEEEEEESGGGTCCTTTTC-CCT-THHHHHHHHHTHH
T ss_pred -------------------------------------HH--cCCeEEEEehhcccccccCCC-CCh-HHHHHHHHHHHHH
Confidence 11 258999999999999987652 222 2345677899999
Q ss_pred cCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc--cCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcC
Q psy2406 310 EGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEG 387 (464)
Q Consensus 310 EG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~--R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~g 387 (464)
+|.. ...++++|+++ ++|+.++|+|++ |||..|.|..++.+++.+|++. . ..+
T Consensus 333 dg~~--------~~~~V~VIaaT----N~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~----~---------l~~ 387 (806)
T 3cf2_A 333 DGLK--------QRAHVIVMAAT----NRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQI----H---------TKN 387 (806)
T ss_dssp HHCC--------GGGCEEEEEEC----SSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHH----T---------CSS
T ss_pred hccc--------ccCCEEEEEec----CChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHH----H---------hcC
Confidence 8732 34578889987 588999999997 9999999999999999999852 1 123
Q ss_pred ceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHH
Q psy2406 388 IKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 426 (464)
Q Consensus 388 i~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~ 426 (464)
..+. ++--+..||+... ++-+..|..++...
T Consensus 388 ~~~~-~dvdl~~lA~~T~-------GfsgaDL~~Lv~eA 418 (806)
T 3cf2_A 388 MKLA-DDVDLEQVANETH-------GHVGADLAALCSEA 418 (806)
T ss_dssp SEEC-TTCCHHHHHHHCC-------SCCHHHHHHHHHHH
T ss_pred CCCC-cccCHHHHHHhcC-------CCCHHHHHHHHHHH
Confidence 3322 2223778888775 45556677776554
No 21
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.81 E-value=3.1e-19 Score=181.36 Aligned_cols=159 Identities=16% Similarity=0.232 Sum_probs=107.4
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.++||||||||.+.+.+.. +.+.....+++.||..|+|.... ...++++|+++ +.+..+.|++++||+
T Consensus 176 ~~~vl~iDEid~l~~~~~~--~~~~~~~~~~~~lL~~l~~~~~~------~~~~v~vI~at----n~~~~l~~~l~~Rf~ 243 (357)
T 3d8b_A 176 QPAVIFIDEIDSLLSQRGD--GEHESSRRIKTEFLVQLDGATTS------SEDRILVVGAT----NRPQEIDEAARRRLV 243 (357)
T ss_dssp CSEEEEEETHHHHTBC--------CHHHHHHHHHHHHHHC----------CCCCEEEEEEE----SCGGGBCHHHHTTCC
T ss_pred CCeEEEEeCchhhhccCCC--CcchHHHHHHHHHHHHHhccccc------CCCCEEEEEec----CChhhCCHHHHhhCc
Confidence 5899999999999876543 22333445778899999874321 23567888886 456778999999999
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
..+.+..++.+++.+|+. .++...+ +.+++++++.|++.+. .+..+.|+.++.......+
T Consensus 244 ~~i~i~~p~~~~r~~il~-----------~~~~~~~--~~l~~~~l~~la~~t~-------G~s~~dl~~l~~~a~~~~i 303 (357)
T 3d8b_A 244 KRLYIPLPEASARKQIVI-----------NLMSKEQ--CCLSEEEIEQIVQQSD-------AFSGADMTQLCREASLGPI 303 (357)
T ss_dssp EEEECCCCCHHHHHHHHH-----------HHHHTSC--BCCCHHHHHHHHHHTT-------TCCHHHHHHHHHHHHTHHH
T ss_pred eEEEeCCcCHHHHHHHHH-----------HHHhhcC--CCccHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHH
Confidence 999999999999999884 2233333 4678999999999874 4567888888877654443
Q ss_pred cccC---------CCceeecHHHHHhHhCC---CCCCCCCCCc
Q psy2406 432 FNSN---------NISLLVDADYVNSRLGD---LSINEDLSRY 462 (464)
Q Consensus 432 ~~~~---------~~~v~I~~e~v~~~~~~---~~~~~d~~~~ 462 (464)
.++. .....|+.+++..++.. .+...++.+|
T Consensus 304 r~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~ 346 (357)
T 3d8b_A 304 RSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELY 346 (357)
T ss_dssp HHCCC----------CCCBCHHHHHHHHHHHGGGCCCCCHHHH
T ss_pred HHhhhhhhccccccccCCcCHHHHHHHHHhcCCCCCHHHHHHH
Confidence 3322 11246888888776433 3444555555
No 22
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.81 E-value=6.7e-19 Score=184.34 Aligned_cols=125 Identities=19% Similarity=0.291 Sum_probs=95.0
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.++||||||||.+++.+... .. .....+++.||..|+|... ...++++|+++ +.|+.++|+|++||+
T Consensus 227 ~~~vl~iDEid~l~~~~~~~-~~-~~~~~~~~~lL~~l~~~~~-------~~~~v~vI~at----n~~~~ld~al~rRf~ 293 (444)
T 2zan_A 227 KPSIIFIDEIDSLCGSRSEN-ES-EAARRIKTEFLVQMQGVGV-------DNDGILVLGAT----NIPWVLDSAIRRRFE 293 (444)
T ss_dssp CSEEEEESCTTTTCCCSSCC-CC-GGGHHHHHHHHTTTTCSSC-------CCSSCEEEEEE----SCGGGSCHHHHTTCC
T ss_pred CCeEEEEechHhhccCCCCc-cc-cHHHHHHHHHHHHHhCccc-------CCCCEEEEecC----CCccccCHHHHhhcc
Confidence 58999999999998776541 12 2234577889999987421 34678888887 467789999999999
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 429 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~ 429 (464)
.++.+++++.+++..|+. ..+. +..+.+++..++.||+.+. ++.++.|..++...+..
T Consensus 294 ~~i~i~~P~~~~r~~il~-----------~~l~--~~~~~l~~~~l~~la~~t~-------G~sgadl~~l~~~a~~~ 351 (444)
T 2zan_A 294 KRIYIPLPEAHARAAMFR-----------LHLG--STQNSLTEADFQELGRKTD-------GYSGADISIIVRDALMQ 351 (444)
T ss_dssp EEEECCCCCHHHHHHHHH-----------HHHT--TSCEECCHHHHHHHHHHTT-------TCCHHHHHHHHHHHHTH
T ss_pred eEEEeCCcCHHHHHHHHH-----------HHHh--cCCCCCCHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHH
Confidence 999999999999999884 1222 3455778999999999874 46678888888776543
No 23
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.81 E-value=9e-19 Score=171.34 Aligned_cols=151 Identities=21% Similarity=0.286 Sum_probs=100.9
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.++||||||||.+...+.. ...+. ....++.||..+++.... ....++++|+++ +.|..++|++++||+
T Consensus 113 ~~~vl~iDEid~l~~~~~~-~~~~~-~~~~~~~ll~~l~~~~~~-----~~~~~v~vi~~t----n~~~~l~~~l~~R~~ 181 (297)
T 3b9p_A 113 QPSIIFIDEVDSLLSERSS-SEHEA-SRRLKTEFLVEFDGLPGN-----PDGDRIVVLAAT----NRPQELDEAALRRFT 181 (297)
T ss_dssp CSEEEEEETGGGTSBCC------CC-SHHHHHHHHHHHHHCC-----------CEEEEEEE----SCGGGBCHHHHHHCC
T ss_pred CCcEEEeccHHHhcccccc-CcchH-HHHHHHHHHHHHhccccc-----CCCCcEEEEeec----CChhhCCHHHHhhCC
Confidence 5899999999999876543 11122 234667788888763221 123457788886 467789999999999
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
..+.++.++.+++..|+. ..+...+ ..+++++++.|++.+. ++-.+.|..+++.......
T Consensus 182 ~~i~~~~p~~~~r~~il~-----------~~~~~~~--~~~~~~~~~~la~~~~-------g~~~~~l~~l~~~a~~~a~ 241 (297)
T 3b9p_A 182 KRVYVSLPDEQTRELLLN-----------RLLQKQG--SPLDTEALRRLAKITD-------GYSGSDLTALAKDAALEPI 241 (297)
T ss_dssp EEEECCCCCHHHHHHHHH-----------HHHGGGS--CCSCHHHHHHHHHHTT-------TCCHHHHHHHHHHHTTHHH
T ss_pred eEEEeCCcCHHHHHHHHH-----------HHHHhcC--CCCCHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHH
Confidence 999999999999988874 2222233 3578999999998874 4556788888876543333
Q ss_pred cccC---------CCceeecHHHHHhHhCCC
Q psy2406 432 FNSN---------NISLLVDADYVNSRLGDL 453 (464)
Q Consensus 432 ~~~~---------~~~v~I~~e~v~~~~~~~ 453 (464)
.+.. .....|+.+++..++...
T Consensus 242 r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 242 RELNVEQVKCLDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp HTCC--------CCCCCCCCHHHHHHHTTSC
T ss_pred HHHhhhhcccccccccCCcCHHHHHHHHHHc
Confidence 3221 111368999998887654
No 24
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.81 E-value=3.7e-20 Score=183.50 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=56.5
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeee---eeeecCceeEeeccCCccccCCCCCchhhh-
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK---YGIIKTDHILFIASGAFHLAKPSDLIPELQ- 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~---~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl- 347 (464)
+++||||||||++++++.+..........+++.||++||+...... +.....+++++|+|+ +.+..++|+|+
T Consensus 99 ~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~tt----N~~~~ld~al~R 174 (293)
T 3t15_A 99 NMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTG----NDFSTLYAPLIR 174 (293)
T ss_dssp SCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEEC----SSCCC--CHHHH
T ss_pred CCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEec----CCcccCCHHHhC
Confidence 6899999999999986543222233445688999999996542211 123457789999997 47788999998
Q ss_pred -ccCCeEEEcCCCCHHHHHHHHH
Q psy2406 348 -GRFPIRVELDSLSISDFTRIMT 369 (464)
Q Consensus 348 -~R~d~iV~f~~Lt~~el~~Il~ 369 (464)
+||+.++.+ ++.+++.+|++
T Consensus 175 ~~R~d~~i~~--P~~~~r~~Il~ 195 (293)
T 3t15_A 175 DGRMEKFYWA--PTREDRIGVCT 195 (293)
T ss_dssp HHHEEEEEEC--CCHHHHHHHHH
T ss_pred CCCCceeEeC--cCHHHHHHHHH
Confidence 699987764 49999999985
No 25
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.80 E-value=1.1e-18 Score=178.61 Aligned_cols=149 Identities=15% Similarity=0.208 Sum_probs=99.0
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.++||||||||.+...+.. +.......+++.||..|+|.... ...++++|+++ +.+..+++++++||+
T Consensus 207 ~~~il~iDEid~l~~~~~~--~~~~~~~~~~~~ll~~l~~~~~~------~~~~v~vI~at----n~~~~l~~~l~~R~~ 274 (389)
T 3vfd_A 207 QPSIIFIDQVDSLLCERRE--GEHDASRRLKTEFLIEFDGVQSA------GDDRVLVMGAT----NRPQELDEAVLRRFI 274 (389)
T ss_dssp SSEEEEEETGGGGC----------CTHHHHHHHHHHHHHHHC-----------CEEEEEEE----SCGGGCCHHHHTTCC
T ss_pred CCeEEEEECchhhcccCCC--ccchHHHHHHHHHHHHhhccccc------CCCCEEEEEec----CCchhcCHHHHcCcc
Confidence 5789999999999776543 12223345777899888863221 23467888887 456789999999999
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
.++.|.+++.+++..|+. .++...+ ..++++++..|++... .+-.+.|..++........
T Consensus 275 ~~i~i~~p~~~~r~~il~-----------~~~~~~~--~~l~~~~~~~la~~~~-------g~~~~~l~~L~~~a~~~~~ 334 (389)
T 3vfd_A 275 KRVYVSLPNEETRLLLLK-----------NLLCKQG--SPLTQKELAQLARMTD-------GYSGSDLTALAKDAALGPI 334 (389)
T ss_dssp EEEECCCCCHHHHHHHHH-----------HHHTTSC--CCSCHHHHHHHHHHTT-------TCCHHHHHHHHHHHTTHHH
T ss_pred eEEEcCCcCHHHHHHHHH-----------HHHHhcC--CCCCHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHH
Confidence 889999999999999984 2233334 4678999999998875 3556778777765544333
Q ss_pred cccCC---------CceeecHHHHHhHhCC
Q psy2406 432 FNSNN---------ISLLVDADYVNSRLGD 452 (464)
Q Consensus 432 ~~~~~---------~~v~I~~e~v~~~~~~ 452 (464)
.++.. ....|+.+++...+..
T Consensus 335 rel~~~~~~~~~~~~~~~i~~~d~~~al~~ 364 (389)
T 3vfd_A 335 RELKPEQVKNMSASEMRNIRLSDFTESLKK 364 (389)
T ss_dssp HTSCCC---CCSSSCCCCCCHHHHHHHHHH
T ss_pred HhhhhhhhhccchhhcCCcCHHHHHHHHHH
Confidence 33221 1146888888776543
No 26
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.80 E-value=2.9e-19 Score=175.22 Aligned_cols=132 Identities=15% Similarity=0.195 Sum_probs=90.1
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccC-CCCCchhhhccC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAK-PSDLIPELQGRF 350 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~-p~~f~PEfl~R~ 350 (464)
.++||||||||.+.+.+.+ +.....+++.|+++|+.. ..++.+|++++..... ...+.|+|++||
T Consensus 130 ~~~vl~iDEid~l~~~~~~----~~~~~~~~~~Ll~~l~~~----------~~~~~~i~~~~~~~~~~~~~~~~~l~~R~ 195 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENN----------RDDLVVILAGYADRMENFFQSNPGFRSRI 195 (309)
T ss_dssp TTSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHHC----------TTTCEEEEEECHHHHHHHHHHSTTHHHHE
T ss_pred CCCEEEEEChhhhccCCCc----ccccHHHHHHHHHHHhcC----------CCCEEEEEeCChHHHHHHHhhCHHHHHhC
Confidence 5789999999999865432 223345788999999853 3456777776421100 012459999999
Q ss_pred CeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHH
Q psy2406 351 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 430 (464)
Q Consensus 351 d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~ 430 (464)
+.+|.|++|+.+++..|+.. . +...+ +.+++++++.|++...........+.+|.+++++++.+...
T Consensus 196 ~~~i~~~~~~~~~~~~il~~----~-------l~~~~--~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~ 262 (309)
T 3syl_A 196 AHHIEFPDYSDEELFEIAGH----M-------LDDQN--YQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQ 262 (309)
T ss_dssp EEEEEECCCCHHHHHHHHHH----H-------HHHTT--CEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEcCCcCHHHHHHHHHH----H-------HHHcC--CCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999842 2 22234 58899999999987531100001244999999999887644
No 27
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.79 E-value=1.3e-19 Score=179.65 Aligned_cols=158 Identities=15% Similarity=0.216 Sum_probs=100.9
Q ss_pred CCcEEEEeccccccCcCCCCC-CCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc--
Q psy2406 272 QNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG-- 348 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~-~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~-- 348 (464)
.++||||||||.+.+.+.... ........+++.||..|+|.. ...++++|+++ +.++.++|++++
T Consensus 108 ~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~--------~~~~v~vi~at----n~~~~ld~al~r~g 175 (301)
T 3cf0_A 108 APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS--------TKKNVFIIGAT----NRPDIIDPAILRPG 175 (301)
T ss_dssp CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC--------TTSSEEEEEEE----SCGGGSCGGGGSTT
T ss_pred CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc--------CCCCEEEEEec----CCccccChHHhcCC
Confidence 589999999999987654311 111122346778999998631 34578888887 467778999987
Q ss_pred cCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHH
Q psy2406 349 RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 428 (464)
Q Consensus 349 R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~ 428 (464)
||+.++.|++++.+++.+|++ ..+...+..-.+ .++.|+...+ .+.++.|++++++.+.
T Consensus 176 Rf~~~i~i~~p~~~~r~~il~-----------~~l~~~~~~~~~---~~~~la~~~~-------g~sg~dl~~l~~~a~~ 234 (301)
T 3cf0_A 176 RLDQLIYIPLPDEKSRVAILK-----------ANLRKSPVAKDV---DLEFLAKMTN-------GFSGADLTEICQRACK 234 (301)
T ss_dssp SSCEEEECCCCCHHHHHHHHH-----------HHHTTSCBCSSC---CHHHHHHTCS-------SCCHHHHHHHHHHHHH
T ss_pred ccceEEecCCcCHHHHHHHHH-----------HHHccCCCCccc---hHHHHHHHcC-------CCCHHHHHHHHHHHHH
Confidence 999999999999999999884 222223332222 2456776554 3444588888877554
Q ss_pred HHhccc--------------C--------CCceeecHHHHHhHhCCC---CCCCCCCCc
Q psy2406 429 EVSFNS--------------N--------NISLLVDADYVNSRLGDL---SINEDLSRY 462 (464)
Q Consensus 429 ~~l~~~--------------~--------~~~v~I~~e~v~~~~~~~---~~~~d~~~~ 462 (464)
....+. + .....|+.++++.++... +...|+.+|
T Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~ 293 (301)
T 3cf0_A 235 LAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKY 293 (301)
T ss_dssp HHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 332110 0 001368899998887654 344444444
No 28
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.77 E-value=1e-17 Score=166.82 Aligned_cols=139 Identities=16% Similarity=0.240 Sum_probs=98.7
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeee--------eeeecCceeEeeccCCccccCCCCCc
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK--------YGIIKTDHILFIASGAFHLAKPSDLI 343 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~--------~~~i~Tsnil~I~ag~f~~~~p~~f~ 343 (464)
.++||||||||.+.+. .|+.|+..|+...+..- ...++..++.+|++++ ....++
T Consensus 106 ~~~vl~lDEi~~l~~~-------------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn----~~~~l~ 168 (338)
T 3pfi_A 106 EGDILFIDEIHRLSPA-------------IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATT----RAGMLS 168 (338)
T ss_dssp TTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEES----CGGGSC
T ss_pred CCCEEEEechhhcCHH-------------HHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCC----CccccC
Confidence 6789999999999643 67799999986554321 1123334678888874 445689
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHH
Q psy2406 344 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 423 (464)
Q Consensus 344 PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~I 423 (464)
|+|++||+.++.|++|+.+++..++.. .+...+ +.+++++++.|++.+ .+..|.+.+++
T Consensus 169 ~~L~~R~~~~i~l~~~~~~e~~~il~~-----------~~~~~~--~~~~~~~~~~l~~~~--------~G~~r~l~~~l 227 (338)
T 3pfi_A 169 NPLRDRFGMQFRLEFYKDSELALILQK-----------AALKLN--KTCEEKAALEIAKRS--------RSTPRIALRLL 227 (338)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHH-----------HHHHTT--CEECHHHHHHHHHTT--------TTCHHHHHHHH
T ss_pred HHHHhhcCEEeeCCCcCHHHHHHHHHH-----------HHHhcC--CCCCHHHHHHHHHHH--------CcCHHHHHHHH
Confidence 999999999999999999999998841 122234 578999999999833 46789999999
Q ss_pred HHHHHHHhcccCCCceeecHHHHHhHhC
Q psy2406 424 EKLLEEVSFNSNNISLLVDADYVNSRLG 451 (464)
Q Consensus 424 E~~l~~~l~~~~~~~v~I~~e~v~~~~~ 451 (464)
+........ . ..-.|+.+++...+.
T Consensus 228 ~~~~~~a~~--~-~~~~i~~~~~~~~~~ 252 (338)
T 3pfi_A 228 KRVRDFADV--N-DEEIITEKRANEALN 252 (338)
T ss_dssp HHHHHHHHH--T-TCSEECHHHHHHHHH
T ss_pred HHHHHHHHh--h-cCCccCHHHHHHHHH
Confidence 886543221 1 112577777766554
No 29
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.77 E-value=8.9e-18 Score=176.49 Aligned_cols=143 Identities=24% Similarity=0.359 Sum_probs=98.5
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCC-CCCchhhhccC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKP-SDLIPELQGRF 350 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p-~~f~PEfl~R~ 350 (464)
.++||||||||.+... .|+.||+.|+.+. +++|++++ .++ ..+.+++++|+
T Consensus 106 ~~~iLfIDEI~~l~~~-------------~q~~LL~~le~~~------------v~lI~att---~n~~~~l~~aL~sR~ 157 (447)
T 3pvs_A 106 RRTILFVDEVHRFNKS-------------QQDAFLPHIEDGT------------ITFIGATT---ENPSFELNSALLSRA 157 (447)
T ss_dssp CCEEEEEETTTCC-------------------CCHHHHHTTS------------CEEEEEES---SCGGGSSCHHHHTTE
T ss_pred CCcEEEEeChhhhCHH-------------HHHHHHHHHhcCc------------eEEEecCC---CCcccccCHHHhCce
Confidence 5789999999999754 4568999998643 45666653 343 46899999999
Q ss_pred CeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHH
Q psy2406 351 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 430 (464)
Q Consensus 351 d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~ 430 (464)
. ++.|++|+.+++..++.. .+.+....+ .+..+.++++++++|++.+ .+++|.+.++++..+...
T Consensus 158 ~-v~~l~~l~~edi~~il~~----~l~~~~~~~--~~~~~~i~~~al~~L~~~~--------~Gd~R~lln~Le~a~~~a 222 (447)
T 3pvs_A 158 R-VYLLKSLSTEDIEQVLTQ----AMEDKTRGY--GGQDIVLPDETRRAIAELV--------NGDARRALNTLEMMADMA 222 (447)
T ss_dssp E-EEECCCCCHHHHHHHHHH----HHHCTTTSS--TTSSEECCHHHHHHHHHHH--------CSCHHHHHHHHHHHHHHS
T ss_pred e-EEeeCCcCHHHHHHHHHH----HHHHHhhhh--ccccCcCCHHHHHHHHHHC--------CCCHHHHHHHHHHHHHhc
Confidence 7 578999999999999852 221111000 1145789999999999985 589999999999876532
Q ss_pred hcccCCCceeecHHHHHhHhCCCCCCCC
Q psy2406 431 SFNSNNISLLVDADYVNSRLGDLSINED 458 (464)
Q Consensus 431 l~~~~~~~v~I~~e~v~~~~~~~~~~~d 458 (464)
... ......||.++|++.++.....+|
T Consensus 223 ~~~-~~~~~~It~e~v~~~l~~~~~~~d 249 (447)
T 3pvs_A 223 EVD-DSGKRVLKPELLTEIAGERSARFD 249 (447)
T ss_dssp CBC-TTSCEECCHHHHHHHHTCCCCC--
T ss_pred ccc-cCCCCccCHHHHHHHHhhhhhccC
Confidence 111 112357999999999988765444
No 30
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.75 E-value=2.4e-17 Score=158.41 Aligned_cols=146 Identities=17% Similarity=0.185 Sum_probs=97.6
Q ss_pred CCcEEEEeccccccCcCCCCC-CCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc--
Q psy2406 272 QNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG-- 348 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~-~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~-- 348 (464)
.++|+||||||.+.+.+.... +.........+.+|..+++.. ...++++|+++ +.+..++|++++
T Consensus 104 ~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~~vI~~t----n~~~~l~~~l~r~~ 171 (257)
T 1lv7_A 104 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE--------GNEGIIVIAAT----NRPDVLDPALLRPG 171 (257)
T ss_dssp CSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC--------SSSCEEEEEEE----SCTTTSCGGGGSTT
T ss_pred CCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc--------cCCCEEEEEee----CCchhCCHHHcCCC
Confidence 478999999999987665321 122222345667887777631 24567888886 467778999987
Q ss_pred cCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHH-HHHHHHHhhccccCCCccChhHHHHHHHHHH
Q psy2406 349 RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDG-IQRLAEIAYCINERTENIGARRLYTAMEKLL 427 (464)
Q Consensus 349 R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeA-l~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l 427 (464)
||+..+.|.+++.+++.+|++. .+.. . .+++++ ...++... + ++.+|.|.+++++..
T Consensus 172 rf~~~i~i~~P~~~~r~~il~~-----------~~~~--~--~l~~~~~~~~la~~~--~-----G~~~~dl~~l~~~a~ 229 (257)
T 1lv7_A 172 RFDRQVVVGLPDVRGREQILKV-----------HMRR--V--PLAPDIDAAIIARGT--P-----GFSGADLANLVNEAA 229 (257)
T ss_dssp SSCEEEECCCCCHHHHHHHHHH-----------HHTT--S--CBCTTCCHHHHHHTC--T-----TCCHHHHHHHHHHHH
T ss_pred cCCeEEEeCCCCHHHHHHHHHH-----------HHhc--C--CCCccccHHHHHHHc--C-----CCCHHHHHHHHHHHH
Confidence 9999999999999999888741 1221 2 233333 45555433 1 457899999998876
Q ss_pred HHHhcccCCCceeecHHHHHhHhCCCC
Q psy2406 428 EEVSFNSNNISLLVDADYVNSRLGDLS 454 (464)
Q Consensus 428 ~~~l~~~~~~~v~I~~e~v~~~~~~~~ 454 (464)
...... ..-.|+.++++.++...+
T Consensus 230 ~~a~~~---~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 230 LFAARG---NKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHT---TCSSBCHHHHHHHHHHHT
T ss_pred HHHHHh---CCCcccHHHHHHHHHHHh
Confidence 544322 123689999988776554
No 31
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.75 E-value=1.3e-17 Score=161.86 Aligned_cols=148 Identities=18% Similarity=0.207 Sum_probs=95.4
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc--c
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--R 349 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~--R 349 (464)
.++||||||||.+.+.+.+.. .......+..|+.+++... +.-...++++|+|+ +.+..++|.+++ |
T Consensus 110 ~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~l~~ll~~~~-----~~~~~~~~~vI~tt----n~~~~l~~~l~~~~R 178 (285)
T 3h4m_A 110 APSIIFIDEIDAIAAKRTDAL--TGGDREVQRTLMQLLAEMD-----GFDARGDVKIIGAT----NRPDILDPAILRPGR 178 (285)
T ss_dssp CSEEEEEETTHHHHBCCSSSC--CGGGGHHHHHHHHHHHHHH-----TTCSSSSEEEEEEC----SCGGGBCHHHHSTTS
T ss_pred CCeEEEEECHHHhcccCcccc--CCccHHHHHHHHHHHHHhh-----CCCCCCCEEEEEeC----CCchhcCHHHcCCCc
Confidence 578999999999987765421 1122234555555553100 01123467888887 456778899998 9
Q ss_pred CCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHH
Q psy2406 350 FPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 429 (464)
Q Consensus 350 ~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~ 429 (464)
|+.++.|++++.+++.+|++. .+...+.. .+..+..|+.... .+-+|.++.++......
T Consensus 179 f~~~i~~~~p~~~~r~~il~~-----------~~~~~~~~---~~~~~~~l~~~~~-------g~~~~~i~~l~~~a~~~ 237 (285)
T 3h4m_A 179 FDRIIEVPAPDEKGRLEILKI-----------HTRKMNLA---EDVNLEEIAKMTE-------GCVGAELKAICTEAGMN 237 (285)
T ss_dssp EEEEEECCCCCHHHHHHHHHH-----------HHTTSCBC---TTCCHHHHHHHCT-------TCCHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCHHHHHHHHHH-----------HHhcCCCC---CcCCHHHHHHHcC-------CCCHHHHHHHHHHHHHH
Confidence 999999999999999999841 12222222 2334677777764 45678888888776554
Q ss_pred HhcccCCCceeecHHHHHhHhCCCC
Q psy2406 430 VSFNSNNISLLVDADYVNSRLGDLS 454 (464)
Q Consensus 430 ~l~~~~~~~v~I~~e~v~~~~~~~~ 454 (464)
..... .-.||.+++++++....
T Consensus 238 a~~~~---~~~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 238 AIREL---RDYVTMDDFRKAVEKIM 259 (285)
T ss_dssp HHHTT---CSSBCHHHHHHHHHHHH
T ss_pred HHHhc---cCcCCHHHHHHHHHHHH
Confidence 43322 23588888888766543
No 32
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.74 E-value=1.1e-17 Score=177.34 Aligned_cols=146 Identities=16% Similarity=0.199 Sum_probs=95.1
Q ss_pred CCcEEEEeccccccCcCCCC-CCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc--
Q psy2406 272 QNGIIFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG-- 348 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~-~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~-- 348 (464)
.|+||||||||.+++.+... .+.+.....+++.||..|+|.. ...++++|+++ +.|..++|++++
T Consensus 108 ~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~--------~~~~viVIaaT----n~~~~Ld~allR~g 175 (476)
T 2ce7_A 108 APCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD--------SKEGIIVMAAT----NRPDILDPALLRPG 175 (476)
T ss_dssp CSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC--------GGGTEEEEEEE----SCGGGSCGGGGSTT
T ss_pred CCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC--------CCCCEEEEEec----CChhhhchhhcccC
Confidence 58999999999998876532 2334445567888998888521 23467888887 456678899885
Q ss_pred cCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHH-HHHHHHHhhccccCCCccChhHHHHHHHHHH
Q psy2406 349 RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDG-IQRLAEIAYCINERTENIGARRLYTAMEKLL 427 (464)
Q Consensus 349 R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeA-l~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l 427 (464)
|||..|.|++++.+++.+|++. .+. +.. +.+++ +..||+... .+-+|.|.++++...
T Consensus 176 RFd~~i~i~~Pd~~~R~~Il~~-----------~~~--~~~--l~~~v~l~~la~~t~-------G~sgadL~~lv~~Aa 233 (476)
T 2ce7_A 176 RFDKKIVVDPPDMLGRKKILEI-----------HTR--NKP--LAEDVNLEIIAKRTP-------GFVGADLENLVNEAA 233 (476)
T ss_dssp SSCEEEECCCCCHHHHHHHHHH-----------HHT--TSC--BCTTCCHHHHHHTCT-------TCCHHHHHHHHHHHH
T ss_pred cceeEeecCCCCHHHHHHHHHH-----------HHH--hCC--CcchhhHHHHHHhcC-------CCcHHHHHHHHHHHH
Confidence 9999999999999999998841 111 222 22332 666776542 445578999988765
Q ss_pred HHHhcccCCCceeecHHHHHhHhCCCC
Q psy2406 428 EEVSFNSNNISLLVDADYVNSRLGDLS 454 (464)
Q Consensus 428 ~~~l~~~~~~~v~I~~e~v~~~~~~~~ 454 (464)
...... ..-.|+.+++..++.+.+
T Consensus 234 l~A~~~---~~~~I~~~dl~~al~~v~ 257 (476)
T 2ce7_A 234 LLAARE---GRDKITMKDFEEAIDRVI 257 (476)
T ss_dssp HHHHHT---TCSSBCHHHHHHHHHHHC
T ss_pred HHHHHc---CCCeecHHHHHHHHHHHh
Confidence 433211 123588888877765543
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.74 E-value=5.7e-17 Score=162.69 Aligned_cols=141 Identities=18% Similarity=0.177 Sum_probs=99.0
Q ss_pred CcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeee-cCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 273 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII-KTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 273 ~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i-~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
++||||||||.+... .++.|++.++...... ..+ ....+.+|++++ .+.+..++|.|++||.
T Consensus 190 ~~vl~IDEi~~l~~~-------------~~~~L~~~le~~~~~~--~ii~t~~~~~~i~~t~--~~~~~~l~~~l~sR~~ 252 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIE-------------SFSFLNRALESDMAPV--LIMATNRGITRIRGTS--YQSPHGIPIDLLDRLL 252 (368)
T ss_dssp BCEEEEESGGGSBHH-------------HHHHHHHHTTCTTCCE--EEEEESCSEEECBTSS--CEEETTCCHHHHTTEE
T ss_pred CceEEEhhccccChH-------------HHHHHHHHhhCcCCCe--eeeecccceeeeeccC--CCCcccCCHHHHhhcc
Confidence 689999999999643 6678999998543221 122 222344455442 2335679999999997
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
. +.|++|+.+++.+|+.. .+...++ .++++++++|++.+. .++.|.+.++++.......
T Consensus 253 ~-i~~~~~~~~e~~~il~~-----------~~~~~~~--~~~~~~l~~l~~~~~-------~G~~r~~~~ll~~a~~~A~ 311 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRI-----------RCEEEDV--EMSEDAYTVLTRIGL-------ETSLRYAIQLITAASLVCR 311 (368)
T ss_dssp E-EEECCCCHHHHHHHHHH-----------HHHHTTC--CBCHHHHHHHHHHHH-------HSCHHHHHHHHHHHHHHHH
T ss_pred E-EEecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHH
Confidence 7 79999999999999852 2223344 689999999999884 2688999999998765432
Q ss_pred cccCCCceeecHHHHHhHhCCCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGDLS 454 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~~~ 454 (464)
.. ..-.||.++|++.+...+
T Consensus 312 ~~---~~~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 312 KR---KGTEVQVDDIKRVYSLFL 331 (368)
T ss_dssp HT---TCSSBCHHHHHHHHHHSB
T ss_pred Hh---CCCCCCHHHHHHHHHHhc
Confidence 21 223689999988776543
No 34
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.74 E-value=2.4e-17 Score=157.37 Aligned_cols=146 Identities=18% Similarity=0.198 Sum_probs=79.9
Q ss_pred CCcEEEEeccccccCcCCCCC--CCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc-
Q psy2406 272 QNGIIFLDEIDKITTRSSQNN--NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG- 348 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~--~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~- 348 (464)
.++||||||||.+...+.... ..+.........||..+++. -...++++|+++ +.+..++|++++
T Consensus 98 ~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~--------~~~~~~~vi~~t----n~~~~ld~~l~~~ 165 (262)
T 2qz4_A 98 APCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM--------GTTDHVIVLAST----NRADILDGALMRP 165 (262)
T ss_dssp CSEEEEEECC-------------------CHHHHHHHHHHHTC--------CTTCCEEEEEEE----SCGGGGGSGGGST
T ss_pred CCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCc--------CCCCCEEEEecC----CChhhcCHHHhcC
Confidence 479999999999977654211 00111112344556555542 124567888876 356678889988
Q ss_pred -cCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHH-HHHHHHHHhhccccCCCccChhHHHHHHHHH
Q psy2406 349 -RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDD-GIQRLAEIAYCINERTENIGARRLYTAMEKL 426 (464)
Q Consensus 349 -R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sde-Al~~LA~~a~~~~~~~~~~GAR~L~r~IE~~ 426 (464)
||+..+.|++++.+++.+|++. . +...+. ..+++ ....|+.... .+..|.|.+++...
T Consensus 166 ~R~~~~i~i~~p~~~~r~~il~~----~-------~~~~~~--~~~~~~~~~~l~~~~~-------g~~~~~l~~l~~~a 225 (262)
T 2qz4_A 166 GRLDRHVFIDLPTLQERREIFEQ----H-------LKSLKL--TQSSTFYSQRLAELTP-------GFSGADIANICNEA 225 (262)
T ss_dssp TSCCEEEECCSCCHHHHHHHHHH----H-------HHHTTC--CBTHHHHHHHHHHTCT-------TCCHHHHHHHHHHH
T ss_pred CcCCeEEEeCCcCHHHHHHHHHH----H-------HHhCCC--CcchhhHHHHHHHHCC-------CCCHHHHHHHHHHH
Confidence 9999999999999999998841 2 222233 44444 3467776653 34557888888765
Q ss_pred HHHHhcccCCCceeecHHHHHhHhCC
Q psy2406 427 LEEVSFNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 427 l~~~l~~~~~~~v~I~~e~v~~~~~~ 452 (464)
..... ....-.|+.++++.++..
T Consensus 226 ~~~a~---~~~~~~i~~~d~~~a~~~ 248 (262)
T 2qz4_A 226 ALHAA---REGHTSVHTLNFEYAVER 248 (262)
T ss_dssp HTC-----------CCBCCHHHHHHH
T ss_pred HHHHH---HcCCCCCCHHHHHHHHHH
Confidence 43322 111235666666655443
No 35
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.74 E-value=6.6e-18 Score=177.01 Aligned_cols=142 Identities=16% Similarity=0.182 Sum_probs=94.4
Q ss_pred CcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecC-ceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 273 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKT-DHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 273 ~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~T-snil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
++|+||||+|++... .++.||+.||.....+ .++.| ..+.+|+++. ....|..++|.+++||.
T Consensus 296 ~~VliIDEa~~l~~~-------------a~~aLlk~lEe~~~~~--~il~tn~~~~~i~~~~-~~~~~~~l~~~i~sR~~ 359 (456)
T 2c9o_A 296 PGVLFVDEVHMLDIE-------------CFTYLHRALESSIAPI--VIFASNRGNCVIRGTE-DITSPHGIPLDLLDRVM 359 (456)
T ss_dssp ECEEEEESGGGCBHH-------------HHHHHHHHTTSTTCCE--EEEEECCSEEECBTTS-SCEEETTCCHHHHTTEE
T ss_pred ceEEEEechhhcCHH-------------HHHHHHHHhhccCCCE--EEEecCCccccccccc-cccccccCChhHHhhcc
Confidence 479999999999643 6789999998532110 01011 1112222221 12236789999999997
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
. +.|.+++.+++.+|+.. .+...++ .++++++..|++.+. .+++|....+++....-..
T Consensus 360 ~-~~~~~~~~~e~~~iL~~-----------~~~~~~~--~~~~~~~~~i~~~a~-------~g~~r~a~~ll~~a~~~A~ 418 (456)
T 2c9o_A 360 I-IRTMLYTPQEMKQIIKI-----------RAQTEGI--NISEEALNHLGEIGT-------KTTLRYSVQLLTPANLLAK 418 (456)
T ss_dssp E-EECCCCCHHHHHHHHHH-----------HHHHHTC--CBCHHHHHHHHHHHH-------HSCHHHHHHTHHHHHHHHH
T ss_pred e-eeCCCCCHHHHHHHHHH-----------HHHHhCC--CCCHHHHHHHHHHcc-------CCCHHHHHHHHHHHHHHHh
Confidence 7 59999999999999952 1222343 689999999999884 2578988888887643221
Q ss_pred cccCCCceeecHHHHHhHhCCCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGDLS 454 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~~~ 454 (464)
.. +.-.||.++|+..++-++
T Consensus 419 --~~-~~~~v~~~~v~~~~~~~~ 438 (456)
T 2c9o_A 419 --IN-GKDSIEKEHVEEISELFY 438 (456)
T ss_dssp --HT-TCSSBCHHHHHHHHHHSC
T ss_pred --hc-CCCccCHHHHHHHHHHhc
Confidence 11 223689999988776554
No 36
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.71 E-value=2.8e-17 Score=174.61 Aligned_cols=146 Identities=20% Similarity=0.293 Sum_probs=99.6
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc--c
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--R 349 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~--R 349 (464)
.++||||||||.+.+.+.. .. ......+|..||.+|++.. ...++++|+++ +.+..++|++++ |
T Consensus 297 ~p~iLfLDEId~l~~~~~~-~~-~~~~~~~~~~LL~~ld~~~--------~~~~v~vIaaT----n~~~~Ld~al~r~gR 362 (489)
T 3hu3_A 297 APAIIFIDELDAIAPKREK-TH-GEVERRIVSQLLTLMDGLK--------QRAHVIVMAAT----NRPNSIDPALRRFGR 362 (489)
T ss_dssp CSEEEEEESHHHHCBCTTS-CC-CHHHHHHHHHHHHHHHHSC--------TTSCEEEEEEE----SCGGGBCGGGGSTTS
T ss_pred CCcEEEecchhhhcccccc-cc-chHHHHHHHHHHHHhhccc--------cCCceEEEEec----CCccccCHHHhCCCc
Confidence 4799999999999987653 11 2233458889999998532 34567888887 456678899987 9
Q ss_pred CCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHH
Q psy2406 350 FPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 429 (464)
Q Consensus 350 ~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~ 429 (464)
|+..+.|.+++.+++.+|+.. ++. +..+. .+..+..|+.... .+.+|.|..++......
T Consensus 363 f~~~i~i~~P~~~eR~~IL~~-----------~~~--~~~l~-~~~~l~~la~~t~-------g~s~~dL~~L~~~A~~~ 421 (489)
T 3hu3_A 363 FDREVDIGIPDATGRLEILQI-----------HTK--NMKLA-DDVDLEQVANETH-------GHVGADLAALCSEAALQ 421 (489)
T ss_dssp SCEEEECCCCCHHHHHHHHHH-----------HTT--TSCBC-TTCCHHHHHHTCT-------TCCHHHHHHHHHHHHHH
T ss_pred CceEEEeCCCCHHHHHHHHHH-----------HHh--cCCCc-chhhHHHHHHHcc-------CCcHHHHHHHHHHHHHH
Confidence 999999999999999999841 122 22222 2223567776654 45678888888776555
Q ss_pred HhcccCC------C--------ceeecHHHHHhHhCC
Q psy2406 430 VSFNSNN------I--------SLLVDADYVNSRLGD 452 (464)
Q Consensus 430 ~l~~~~~------~--------~v~I~~e~v~~~~~~ 452 (464)
....... . .+.|+.++++.++..
T Consensus 422 a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~ 458 (489)
T 3hu3_A 422 AIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 458 (489)
T ss_dssp HHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTS
T ss_pred HHHhccccccccccccchhhcccCcCCHHHHHHHHHh
Confidence 4433211 0 146888888877654
No 37
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.69 E-value=4.4e-18 Score=164.09 Aligned_cols=148 Identities=20% Similarity=0.284 Sum_probs=91.8
Q ss_pred CCcEEEEeccccccCcCCCCC--CCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc-
Q psy2406 272 QNGIIFLDEIDKITTRSSQNN--NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG- 348 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~--~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~- 348 (464)
.++||||||||.+...+.... ..+......++.||..+++... ...++++|+++ +.+..++|++++
T Consensus 103 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~v~vi~tt----n~~~~ld~~l~r~ 171 (268)
T 2r62_A 103 APSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS-------ENAPVIVLAAT----NRPEILDPALMRP 171 (268)
T ss_dssp CSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC-------SCSCCEEEECB----SCCTTSCGGGGSS
T ss_pred CCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc-------CCCCEEEEEec----CCchhcCHhHcCC
Confidence 579999999999987653211 1111222355678888876321 23457788886 456678899987
Q ss_pred -cCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHH
Q psy2406 349 -RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 427 (464)
Q Consensus 349 -R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l 427 (464)
||+..+.|.+++.+++.+|++. .+. +..+. ++..++.|++... .+-+|.|+++++...
T Consensus 172 ~Rf~~~i~i~~p~~~~r~~il~~-----------~~~--~~~~~-~~~~~~~la~~~~-------g~~g~dl~~l~~~a~ 230 (268)
T 2r62_A 172 GRFDRQVLVDKPDFNGRVEILKV-----------HIK--GVKLA-NDVNLQEVAKLTA-------GLAGADLANIINEAA 230 (268)
T ss_dssp SSSCCCCBCCCCCTTTHHHHHHH-----------HTS--SSCCC-SSCCTTTTTSSSC-------SSCHHHHHHHHHHHH
T ss_pred CCCCeEEEecCcCHHHHHHHHHH-----------HHh--cCCCC-CccCHHHHHHHcC-------CCCHHHHHHHHHHHH
Confidence 9999999999999999998841 122 22221 2223555665543 344588888888765
Q ss_pred HHHhcccCCCceeecHHHHHhHhCCCC
Q psy2406 428 EEVSFNSNNISLLVDADYVNSRLGDLS 454 (464)
Q Consensus 428 ~~~l~~~~~~~v~I~~e~v~~~~~~~~ 454 (464)
... .....-.|+.+++..++....
T Consensus 231 ~~a---~~~~~~~i~~~~~~~a~~~~~ 254 (268)
T 2r62_A 231 LLA---GRNNQKEVRQQHLKEAVERGI 254 (268)
T ss_dssp HTT---SSSCCCSCCHHHHHTSCTTCC
T ss_pred HHH---HHhccCCcCHHHHHHHHHHHh
Confidence 432 112224689999988766543
No 38
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.68 E-value=9.5e-17 Score=162.07 Aligned_cols=152 Identities=10% Similarity=0.082 Sum_probs=98.4
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCC-CCchhhhccC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS-DLIPELQGRF 350 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~-~f~PEfl~R~ 350 (464)
.+.||||||||.+. . |+.|+.+++= .....+++++|+.++. +..|. .+.|.+.+|+
T Consensus 132 ~~~ii~lDE~d~l~-~--------------q~~L~~l~~~-------~~~~~s~~~vI~i~n~-~d~~~~~L~~~v~SR~ 188 (318)
T 3te6_A 132 RKTLILIQNPENLL-S--------------EKILQYFEKW-------ISSKNSKLSIICVGGH-NVTIREQINIMPSLKA 188 (318)
T ss_dssp CEEEEEEECCSSSC-C--------------THHHHHHHHH-------HHCSSCCEEEEEECCS-SCCCHHHHHTCHHHHT
T ss_pred CceEEEEecHHHhh-c--------------chHHHHHHhc-------ccccCCcEEEEEEecC-cccchhhcchhhhccC
Confidence 57899999999997 1 2356665541 0113456778877641 22232 2456678999
Q ss_pred C-eEEEcCCCCHHHHHHHHHhhHHHHHHHHHH-HH-------------------------hhcCceeEeCHHHHHHHHHH
Q psy2406 351 P-IRVELDSLSISDFTRIMTSTNVCLTKQYEA-LL-------------------------ATEGIKIEFVDDGIQRLAEI 403 (464)
Q Consensus 351 d-~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~-ll-------------------------~~~gi~L~~sdeAl~~LA~~ 403 (464)
. .+|.|+|++.+++..|++. .++.... .+ ...++++.++++|++++|+.
T Consensus 189 ~~~~i~F~pYt~~el~~Il~~----Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~ 264 (318)
T 3te6_A 189 HFTEIKLNKVDKNELQQMIIT----RLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKN 264 (318)
T ss_dssp TEEEEECCCCCHHHHHHHHHH----HHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHH
T ss_pred CceEEEeCCCCHHHHHHHHHH----HHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHH
Confidence 7 5789999999999999962 2221110 00 00013457899999999997
Q ss_pred hhccccCCCccChhHHHHHHHHHHHHHhcc------cCCCceeecHHHHHhHhCCCCC
Q psy2406 404 AYCINERTENIGARRLYTAMEKLLEEVSFN------SNNISLLVDADYVNSRLGDLSI 455 (464)
Q Consensus 404 a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~------~~~~~v~I~~e~v~~~~~~~~~ 455 (464)
.... .++||....++++.++-.-.+ ..++.++||.+++++..+.+++
T Consensus 265 vA~~-----~GD~R~Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~~~~ 317 (318)
T 3te6_A 265 VANV-----SGSTEKAFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFSEAIN 317 (318)
T ss_dssp HHHH-----HCSHHHHHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHHHHHC
T ss_pred HHhh-----CChHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHHHHhc
Confidence 5543 689999999998876643211 1233478888888777665543
No 39
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.67 E-value=2.3e-16 Score=156.32 Aligned_cols=114 Identities=18% Similarity=0.279 Sum_probs=87.8
Q ss_pred CCcEEEEecccccc-CcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccC
Q psy2406 272 QNGIIFLDEIDKIT-TRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF 350 (464)
Q Consensus 272 ~~sVIfIDEIDK~~-~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~ 350 (464)
.++||||||||.+. +. .|+.|+.+++.. .+++.+|+++ +.+..+.|++++|+
T Consensus 105 ~~~vliiDEi~~l~~~~-------------~~~~L~~~le~~----------~~~~~iI~~~----n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAE-------------SQRHLRSFMEAY----------SSNCSIIITA----NNIDGIIKPLQSRC 157 (324)
T ss_dssp CEEEEEEESCCCGGGHH-------------HHHHHHHHHHHH----------GGGCEEEEEE----SSGGGSCTTHHHHS
T ss_pred CCeEEEEECCcccCcHH-------------HHHHHHHHHHhC----------CCCcEEEEEe----CCccccCHHHHhhC
Confidence 47899999999996 32 677899988742 2345666665 34556899999999
Q ss_pred CeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCH-HHHHHHHHHhhccccCCCccChhHHHHHHHHHH
Q psy2406 351 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVD-DGIQRLAEIAYCINERTENIGARRLYTAMEKLL 427 (464)
Q Consensus 351 d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sd-eAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l 427 (464)
. ++.|++++.+++.+|+. .+...+...+..+++ .+++ +++++|++.+ .+++|.+.+.+++..
T Consensus 158 ~-~i~~~~~~~~e~~~il~----~~~~~l~~~~~~~~~--~~~~~~~~~~l~~~~--------~gd~R~a~~~L~~~~ 220 (324)
T 3u61_B 158 R-VITFGQPTDEDKIEMMK----QMIRRLTEICKHEGI--AIADMKVVAALVKKN--------FPDFRKTIGELDSYS 220 (324)
T ss_dssp E-EEECCCCCHHHHHHHHH----HHHHHHHHHHHHHTC--CBSCHHHHHHHHHHT--------CSCTTHHHHHHHHHG
T ss_pred c-EEEeCCCCHHHHHHHHH----HHHHHHHHHHHHcCC--CCCcHHHHHHHHHhC--------CCCHHHHHHHHHHHh
Confidence 5 68999999999998884 455555666666676 6778 9999999886 578999999888765
No 40
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.67 E-value=3.1e-18 Score=191.73 Aligned_cols=86 Identities=16% Similarity=0.288 Sum_probs=65.1
Q ss_pred CCcEEEEeccccccCcCCCCC-CCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc--
Q psy2406 272 QNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG-- 348 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~-~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~-- 348 (464)
.+|||||||||++.+.+.+.. ..+.....+++.||+.|||.. ...++++|+|+ +.|+.++|+|++
T Consensus 570 ~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~--------~~~~v~vI~tT----N~~~~ld~allrpg 637 (806)
T 1ypw_A 570 APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS--------TKKNVFIIGAT----NRPDIIDPAILRPG 637 (806)
T ss_dssp CSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--------------CCBCCCCC----BSCGGGSCTTSSGG
T ss_pred CCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc--------ccCCeEEEEec----CCcccCCHHHhCcc
Confidence 589999999999988765421 112233457889999999742 34678888887 467889999998
Q ss_pred cCCeEEEcCCCCHHHHHHHHH
Q psy2406 349 RFPIRVELDSLSISDFTRIMT 369 (464)
Q Consensus 349 R~d~iV~f~~Lt~~el~~Il~ 369 (464)
||+.+|.|++++.+++.+|++
T Consensus 638 Rf~~~i~~~~p~~~~r~~Il~ 658 (806)
T 1ypw_A 638 RLDQLIYIPLPDEKSRVAILK 658 (806)
T ss_dssp GTTSCCCCCCCCCSHHHHHTT
T ss_pred ccCceeecCCCCHHHHHHHHH
Confidence 999999999999999999985
No 41
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.67 E-value=5.5e-16 Score=152.46 Aligned_cols=151 Identities=16% Similarity=0.223 Sum_probs=91.4
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc--c
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--R 349 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~--R 349 (464)
.++|+|+||||.+++.+... ..+. ...+.+.++..|+|.. ....+++++++ ++|..++|++++ |
T Consensus 103 ~p~i~~~Deid~~~~~r~~~-~~~~-~~~~~~~~l~~Lsgg~--------~~~~~i~ia~t----n~p~~LD~al~r~gR 168 (274)
T 2x8a_A 103 APCVIFFDEVDALCPRRSDR-ETGA-SVRVVNQLLTEMDGLE--------ARQQVFIMAAT----NRPDIIDPAILRPGR 168 (274)
T ss_dssp CSEEEEEETCTTTCC-----------CTTHHHHHHHHHHTCC--------STTCEEEEEEE----SCGGGSCHHHHSTTS
T ss_pred CCCeEeeehhhhhhcccCCC-cchH-HHHHHHHHHHhhhccc--------ccCCEEEEeec----CChhhCCHhhcCccc
Confidence 58999999999987654321 1111 1235667888888752 22345666665 578889999986 9
Q ss_pred CCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhh-cCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHH
Q psy2406 350 FPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLAT-EGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 428 (464)
Q Consensus 350 ~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~-~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~ 428 (464)
||..|.+..++.+++.+|++. + +.. ....+. .+-.++.||..... +++-+..|..++.....
T Consensus 169 fd~~i~~~~P~~~~r~~il~~----~-------~~~~~~~~~~-~~~~~~~la~~~~~-----~g~sgadl~~l~~~a~~ 231 (274)
T 2x8a_A 169 LDKTLFVGLPPPADRLAILKT----I-------TKNGTKPPLD-ADVNLEAIAGDLRC-----DCYTGADLSALVREASI 231 (274)
T ss_dssp SCEEEECCSCCHHHHHHHHHH----H-------TTTTBTTBBC-TTCCHHHHHTCSGG-----GSCCHHHHHHHHHHHHH
T ss_pred CCeEEEeCCcCHHHHHHHHHH----H-------HhcccCCCCc-cccCHHHHHHhhcc-----CCcCHHHHHHHHHHHHH
Confidence 999999999999999999841 1 111 111111 12225667654211 14555678887776554
Q ss_pred HHhcccC--------CCceeecHHHHHhHhCCC
Q psy2406 429 EVSFNSN--------NISLLVDADYVNSRLGDL 453 (464)
Q Consensus 429 ~~l~~~~--------~~~v~I~~e~v~~~~~~~ 453 (464)
..+.+.. .....|+.++++.++...
T Consensus 232 ~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~ 264 (274)
T 2x8a_A 232 CALRQEMARQKSGNEKGELKVSHKHFEEAFKKV 264 (274)
T ss_dssp HHHHHHC-----------CCBCHHHHHHHHTTC
T ss_pred HHHHHHHhhccccccccCCeecHHHHHHHHHHh
Confidence 4432211 123679999999987664
No 42
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.66 E-value=1.6e-15 Score=149.42 Aligned_cols=139 Identities=13% Similarity=0.216 Sum_probs=95.0
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee--------eeecCceeEeeccCCccccCCCCCc
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY--------GIIKTDHILFIASGAFHLAKPSDLI 343 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~--------~~i~Tsnil~I~ag~f~~~~p~~f~ 343 (464)
.+++|||||||.+... .|..|+.+|+...+..-. ......++.+|+++ +.+..++
T Consensus 90 ~~~~l~lDEi~~l~~~-------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t----~~~~~~~ 152 (324)
T 1hqc_A 90 EGDILFIDEIHRLSRQ-------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT----TRPGLIT 152 (324)
T ss_dssp TTCEEEETTTTSCCHH-------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEE----SCCSSCS
T ss_pred CCCEEEEECCcccccc-------------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeC----CCcccCC
Confidence 5789999999998643 567888888865433210 11223467788876 3556789
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHH
Q psy2406 344 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 423 (464)
Q Consensus 344 PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~I 423 (464)
+.|.+||+.++.|.+|+.+++..++. ..+...+ +.+++++++.|++.+ .+..|.+.+++
T Consensus 153 ~~l~~R~~~~i~l~~~~~~e~~~~l~-----------~~~~~~~--~~~~~~~~~~l~~~~--------~G~~r~l~~~l 211 (324)
T 1hqc_A 153 APLLSRFGIVEHLEYYTPEELAQGVM-----------RDARLLG--VRITEEAALEIGRRS--------RGTMRVAKRLF 211 (324)
T ss_dssp CSTTTTCSCEEECCCCCHHHHHHHHH-----------HHHHTTT--CCCCHHHHHHHHHHS--------CSCHHHHHHHH
T ss_pred HHHHhcccEEEecCCCCHHHHHHHHH-----------HHHHhcC--CCCCHHHHHHHHHHc--------cCCHHHHHHHH
Confidence 99999998889999999999888874 1222334 468999999999886 35678888888
Q ss_pred HHHHHHHhcccCCCceeecHHHHHhHhC
Q psy2406 424 EKLLEEVSFNSNNISLLVDADYVNSRLG 451 (464)
Q Consensus 424 E~~l~~~l~~~~~~~v~I~~e~v~~~~~ 451 (464)
+...... ... ..-.|+.+++...+.
T Consensus 212 ~~~~~~a--~~~-~~~~i~~~~~~~~~~ 236 (324)
T 1hqc_A 212 RRVRDFA--QVA-GEEVITRERALEALA 236 (324)
T ss_dssp HHHTTTS--TTT-SCSCCCHHHHHHHHH
T ss_pred HHHHHHH--HHh-cCCCCCHHHHHHHHH
Confidence 7654221 111 112567777765543
No 43
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.66 E-value=1.5e-15 Score=150.91 Aligned_cols=157 Identities=17% Similarity=0.208 Sum_probs=100.2
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee-e--eecCceeEeeccCCccccCCCCCchhhhc
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-G--IIKTDHILFIASGAFHLAKPSDLIPELQG 348 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~-~--~i~Tsnil~I~ag~f~~~~p~~f~PEfl~ 348 (464)
.++||||||||++.+. .|+.|+++|+.+...+.. + .-...++.+|++++. ....++|+|++
T Consensus 144 ~~~vl~iDEi~~l~~~-------------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~---~~~~l~~~L~~ 207 (350)
T 1g8p_A 144 NRGYLYIDECNLLEDH-------------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNP---EEGDLRPQLLD 207 (350)
T ss_dssp TTEEEEETTGGGSCHH-------------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECS---CSCCCCHHHHT
T ss_pred CCCEEEEeChhhCCHH-------------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCC---CCCCCCHHHHh
Confidence 5789999999998753 677999999854332211 1 111236778887641 12469999999
Q ss_pred cCCeEEEcCCC-CHHHHHHHHHhhHH------H----------HHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCC
Q psy2406 349 RFPIRVELDSL-SISDFTRIMTSTNV------C----------LTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERT 411 (464)
Q Consensus 349 R~d~iV~f~~L-t~~el~~Il~~~~~------~----------ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~ 411 (464)
||+..+.|.++ +.++...|+..... . .+...........-.+.++++++++|++.+...
T Consensus 208 R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~---- 283 (350)
T 1g8p_A 208 RFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIAL---- 283 (350)
T ss_dssp TCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHS----
T ss_pred hcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHh----
Confidence 99998999999 56666688753100 0 000000001111224589999999999999765
Q ss_pred Ccc-ChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHhCC
Q psy2406 412 ENI-GARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 412 ~~~-GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~~~ 452 (464)
+. ++|.+.++++....-.. ..+. -.|+.++|+..+..
T Consensus 284 -~~~~~R~~~~ll~~a~~~A~--~~~~-~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 284 -GSDGLRGELTLLRSARALAA--LEGA-TAVGRDHLKRVATM 321 (350)
T ss_dssp -SSCSHHHHHHHHHHHHHHHH--HTTC-SBCCHHHHHHHHHH
T ss_pred -CCCCccHHHHHHHHHHHHHH--HcCC-CcCCHHHHHHHHHH
Confidence 44 78999999986543322 1212 25888888776543
No 44
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.66 E-value=4.7e-16 Score=150.80 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=79.6
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCch-hhhccC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIP-ELQGRF 350 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~P-Efl~R~ 350 (464)
+++||||||||++...+.. +.. ....+++.|+.++++.. ....++++|++++ .+..+.+ .+.+||
T Consensus 124 ~~~vl~iDEid~l~~~~~~--~~~-~~~~~l~~L~~~~~~~~-------~~~~~~~ii~ttn----~~~~l~~~~l~~rf 189 (272)
T 1d2n_A 124 QLSCVVVDDIERLLDYVPI--GPR-FSNLVLQALLVLLKKAP-------PQGRKLLIIGTTS----RKDVLQEMEMLNAF 189 (272)
T ss_dssp SEEEEEECCHHHHTTCBTT--TTB-CCHHHHHHHHHHTTCCC-------STTCEEEEEEEES----CHHHHHHTTCTTTS
T ss_pred CCcEEEEEChhhhhccCCC--Chh-HHHHHHHHHHHHhcCcc-------CCCCCEEEEEecC----Chhhcchhhhhccc
Confidence 5899999999998654332 111 22346667777776521 1234667777763 3434455 578999
Q ss_pred CeEEEcCCCCH-HHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHH
Q psy2406 351 PIRVELDSLSI-SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 427 (464)
Q Consensus 351 d~iV~f~~Lt~-~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l 427 (464)
+..+.|++|+. +++..++.. . ..++++++..|++.+...+ -.+++|.+.++++...
T Consensus 190 ~~~i~~p~l~~r~~i~~i~~~--------------~----~~~~~~~~~~l~~~~~g~~---~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 190 STTIHVPNIATGEQLLEALEL--------------L----GNFKDKERTTIAQQVKGKK---VWIGIKKLLMLIEMSL 246 (272)
T ss_dssp SEEEECCCEEEHHHHHHHHHH--------------H----TCSCHHHHHHHHHHHTTSE---EEECHHHHHHHHHHHT
T ss_pred ceEEcCCCccHHHHHHHHHHh--------------c----CCCCHHHHHHHHHHhcCCC---ccccHHHHHHHHHHHh
Confidence 99999999987 666666531 1 1468999999998874200 0247999998888653
No 45
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.66 E-value=5.9e-16 Score=164.93 Aligned_cols=146 Identities=18% Similarity=0.228 Sum_probs=95.6
Q ss_pred CCcEEEEeccccccCcCCCCC-CCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc--
Q psy2406 272 QNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG-- 348 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~-~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~-- 348 (464)
.++|+||||||.+...+.... +.+.......+.||..|+|.. ....+++|+++ ++|..++|++++
T Consensus 123 ~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~--------~~~~viviAat----n~p~~LD~aLlr~g 190 (499)
T 2dhr_A 123 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE--------KDTAIVVMAAT----NRPDILDPALLRPG 190 (499)
T ss_dssp SSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC--------SSCCCEEEECC----SCGGGSCTTTSSTT
T ss_pred CCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc--------cCccEEEEEec----CChhhcCccccccc
Confidence 479999999999987654311 112223345667888888642 23345777776 467778999986
Q ss_pred cCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHH-HHHHHHHhhccccCCCccChhHHHHHHHHHH
Q psy2406 349 RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDG-IQRLAEIAYCINERTENIGARRLYTAMEKLL 427 (464)
Q Consensus 349 R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeA-l~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l 427 (464)
|||..|.|++++.+++.+|++. .+ +++ .+++++ +..||.... .+-+|.|.++++...
T Consensus 191 Rfdr~i~i~~Pd~~~R~~IL~~-----------~~--~~~--~l~~dv~l~~lA~~t~-------G~~gadL~~lv~~Aa 248 (499)
T 2dhr_A 191 RFDRQIAIDAPDVKGREQILRI-----------HA--RGK--PLAEDVDLALLAKRTP-------GFVGADLENLLNEAA 248 (499)
T ss_dssp SSCCEEECCCCCHHHHHHHHHH-----------TT--SSS--CCCCSSTTHHHHTTSC-------SCCHHHHHHHHHHHH
T ss_pred ccceEEecCCCCHHHHHHHHHH-----------HH--hcC--CCChHHHHHHHHHhcC-------CCCHHHHHHHHHHHH
Confidence 9999999999999999998841 11 233 344444 666765542 345588999998765
Q ss_pred HHHhcccCCCceeecHHHHHhHhCCCC
Q psy2406 428 EEVSFNSNNISLLVDADYVNSRLGDLS 454 (464)
Q Consensus 428 ~~~l~~~~~~~v~I~~e~v~~~~~~~~ 454 (464)
..... ...-.|+.++++.++.+.+
T Consensus 249 ~~A~~---~~~~~It~~dl~~al~~v~ 272 (499)
T 2dhr_A 249 LLAAR---EGRRKITMKDLEEAADRVM 272 (499)
T ss_dssp HHHTT---TCCSSCCSHHHHHHHHHHT
T ss_pred HHHHH---hCCCccCHHHHHHHHHHHh
Confidence 43321 1223578888877765543
No 46
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.65 E-value=1.2e-16 Score=154.31 Aligned_cols=130 Identities=18% Similarity=0.232 Sum_probs=88.3
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeee-eecCceeEeeccCCcccc---CCCCCchhhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLA---KPSDLIPELQ 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~-~i~Tsnil~I~ag~f~~~---~p~~f~PEfl 347 (464)
.+++|||||||.+.+. +|+.|+++|+.+.+..... .....++.+|++++.... ....|+++|.
T Consensus 100 ~~~~l~lDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~ 166 (265)
T 2bjv_A 100 DGGTLFLDELATAPMM-------------VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLL 166 (265)
T ss_dssp TTSEEEEESGGGSCHH-------------HHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHH
T ss_pred CCcEEEEechHhcCHH-------------HHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHH
Confidence 5789999999999743 6779999998544321111 112345677887642111 1135889999
Q ss_pred ccCC-eEEEcCCCCH--HHHHHHHHhhHHHHHHHHHHHHhhcCcee--EeCHHHHHHHHHHhhccccCCCccChhHHHHH
Q psy2406 348 GRFP-IRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKI--EFVDDGIQRLAEIAYCINERTENIGARRLYTA 422 (464)
Q Consensus 348 ~R~d-~iV~f~~Lt~--~el~~Il~~~~~~ll~~~~~ll~~~gi~L--~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~ 422 (464)
+||+ ..+.++||++ +++..++. ..++++. ...+... .++++++++|....+ .+++|.|+++
T Consensus 167 ~Rl~~~~i~lp~L~~R~~di~~l~~----~~l~~~~---~~~~~~~~~~~~~~a~~~L~~~~~-------~gn~reL~~~ 232 (265)
T 2bjv_A 167 DALAFDVVQLPPLRERESDIMLMAE----YFAIQMC---REIKLPLFPGFTERARETLLNYRW-------PGNIRELKNV 232 (265)
T ss_dssp HHHCSEEEECCCGGGCHHHHHHHHH----HHHHHHH---HHTTCSSCCCBCHHHHHHHHHSCC-------TTHHHHHHHH
T ss_pred HhhcCcEEeCCChhhhhHHHHHHHH----HHHHHHH---HHhCCCcccCcCHHHHHHHHhCCC-------CCCHHHHHHH
Confidence 9996 4688999986 67777763 3333332 2345443 799999999987655 3789999999
Q ss_pred HHHHHH
Q psy2406 423 MEKLLE 428 (464)
Q Consensus 423 IE~~l~ 428 (464)
++..+.
T Consensus 233 l~~~~~ 238 (265)
T 2bjv_A 233 VERSVY 238 (265)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 47
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.63 E-value=5.3e-15 Score=147.14 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=97.5
Q ss_pred CcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeee-ecCceeEeeccCCccc-cCCCCCchhhhccC
Q psy2406 273 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI-IKTDHILFIASGAFHL-AKPSDLIPELQGRF 350 (464)
Q Consensus 273 ~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~-i~Tsnil~I~ag~f~~-~~p~~f~PEfl~R~ 350 (464)
.+|+||||||++.+. +++.|++.|+.+.+...+.. -...++++|+|++... .....++|+|++||
T Consensus 110 ~~vl~iDEi~~~~~~-------------~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf 176 (331)
T 2r44_A 110 SNFILADEVNRSPAK-------------VQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRF 176 (331)
T ss_dssp SSEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTS
T ss_pred ccEEEEEccccCCHH-------------HHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhhe
Confidence 479999999998643 67799999986655442211 1233556666643100 11123899999999
Q ss_pred CeEEEcCCCCHHHHHHHHHhhHHH-------------HHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccC-------
Q psy2406 351 PIRVELDSLSISDFTRIMTSTNVC-------------LTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINER------- 410 (464)
Q Consensus 351 d~iV~f~~Lt~~el~~Il~~~~~~-------------ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~------- 410 (464)
+..+.|.+++.+++.+|++..... .+...++.. . .+.++++++++|++.+......
T Consensus 177 ~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~--~v~~~~~~~~~i~~~~~~~r~~~~~~~~~ 252 (331)
T 2r44_A 177 MMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEI--N--KVTISESLEKYIIELVFATRFPAEYGLEA 252 (331)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHH--H--TCBCCHHHHHHHHHHHHHHHSGGGGTCHH
T ss_pred eEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHh--c--cCCCCHHHHHHHHHHHHHHhccccccccc
Confidence 988999999999999998632110 011111111 2 4578999999998876321000
Q ss_pred -----CCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHhCCC
Q psy2406 411 -----TENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGDL 453 (464)
Q Consensus 411 -----~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~~~~ 453 (464)
....+.|.+.+++...-.-.. +.. .-.|+.++|+..+..+
T Consensus 253 ~~~~~~~~~s~R~~~~ll~~a~a~A~--l~g-~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 253 EASYILYGASTRAAINLNRVAKAMAF--FNN-RDYVLPEDIKEVAYDI 297 (331)
T ss_dssp HHHHEEECCCHHHHHHHHHHHHHHHH--HTT-CSBCCHHHHHHHHHHH
T ss_pred cccccccCcChhHHHHHHHHHHHHHH--HcC-CCCCCHHHHHHHHHHH
Confidence 002368888887765332221 221 2257888887765443
No 48
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.63 E-value=6.9e-15 Score=134.22 Aligned_cols=123 Identities=24% Similarity=0.296 Sum_probs=90.4
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.++||||||+|.+.+. .++.|+.+++.. ..++.+|+++ +.+..+.|.+.+|+.
T Consensus 102 ~~~vliiDe~~~l~~~-------------~~~~l~~~l~~~----------~~~~~~i~~~----~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 102 PFKIIFLDEADALTAD-------------AQAALRRTMEMY----------SKSCRFILSC----NYVSRIIEPIQSRCA 154 (226)
T ss_dssp SCEEEEEETGGGSCHH-------------HHHHHHHHHHHT----------TTTEEEEEEE----SCGGGSCHHHHTTSE
T ss_pred CceEEEEeChhhcCHH-------------HHHHHHHHHHhc----------CCCCeEEEEe----CChhhcCHHHHHhCc
Confidence 5789999999998643 456788888642 2344556654 244568899999998
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
.+.|.+|+.+++.+++. ..+...++ .+++++++.|++.+ .+..|.+.+.+++.....
T Consensus 155 -~i~~~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~--------~g~~r~l~~~l~~~~~~~- 211 (226)
T 2chg_A 155 -VFRFKPVPKEAMKKRLL-----------EICEKEGV--KITEDGLEALIYIS--------GGDFRKAINALQGAAAIG- 211 (226)
T ss_dssp -EEECCCCCHHHHHHHHH-----------HHHHHHTC--CBCHHHHHHHHHHH--------TTCHHHHHHHHHHHHHTC-
T ss_pred -eeecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHhcC-
Confidence 68999999999988884 12223344 58899999999766 467898999888765421
Q ss_pred cccCCCceeecHHHHHhHhC
Q psy2406 432 FNSNNISLLVDADYVNSRLG 451 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~ 451 (464)
-.||.++|++.++
T Consensus 212 -------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 -------EVVDADTIYQITA 224 (226)
T ss_dssp -------SCBCHHHHHHHHH
T ss_pred -------ceecHHHHHHHhc
Confidence 2689999988765
No 49
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.62 E-value=3.7e-15 Score=142.86 Aligned_cols=142 Identities=18% Similarity=0.223 Sum_probs=90.7
Q ss_pred CCcEEEEeccccccCcCCCCC-CCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc--
Q psy2406 272 QNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG-- 348 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~-~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~-- 348 (464)
.++++|+||||.++..+.... ..+.......+.++..|+|..- ...+++++++ ++|..++|++++
T Consensus 108 ~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~--------~~~~i~~a~t----~~p~~ld~~l~r~~ 175 (254)
T 1ixz_A 108 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--------DTAIVVMAAT----NRPDILDPALLRPG 175 (254)
T ss_dssp SSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT--------TCCEEEEEEE----SCGGGSCGGGGSTT
T ss_pred CCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC--------CCCEEEEEcc----CCchhCCHHHcCCC
Confidence 478999999999876543210 1112223455677777876421 2234555654 567789999987
Q ss_pred cCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHH-HHHHHHHhhccccCCCccChhHHHHHHHHHH
Q psy2406 349 RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDG-IQRLAEIAYCINERTENIGARRLYTAMEKLL 427 (464)
Q Consensus 349 R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeA-l~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l 427 (464)
||+..|.|++++.+++.+|++. . + ++. .+++++ +..||.... ++-+|.|++++++..
T Consensus 176 rf~~~i~i~~p~~~~r~~il~~----~-------~--~~~--~~~~~~~~~~la~~~~-------G~~~~dl~~~~~~a~ 233 (254)
T 1ixz_A 176 RFDRQIAIDAPDVKGREQILRI----H-------A--RGK--PLAEDVDLALLAKRTP-------GFVGADLENLLNEAA 233 (254)
T ss_dssp SSCEEEECCSCCHHHHHHHHHH----H-------H--TTS--CBCTTCCHHHHHHTCT-------TCCHHHHHHHHHHHH
T ss_pred cCCeEEeeCCcCHHHHHHHHHH----H-------H--cCC--CCCcccCHHHHHHHcC-------CCCHHHHHHHHHHHH
Confidence 9999999999999999998841 1 1 233 334443 677776653 455688999998766
Q ss_pred HHHhcccCCCceeecHHHHHhHh
Q psy2406 428 EEVSFNSNNISLLVDADYVNSRL 450 (464)
Q Consensus 428 ~~~l~~~~~~~v~I~~e~v~~~~ 450 (464)
...... ....||.+++++++
T Consensus 234 ~~a~~~---~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 234 LLAARE---GRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHT---TCSSBCHHHHHHHT
T ss_pred HHHHHh---cCCCcCHHHHHHHh
Confidence 544322 12368999988765
No 50
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.60 E-value=2.2e-14 Score=143.97 Aligned_cols=133 Identities=18% Similarity=0.172 Sum_probs=87.6
Q ss_pred EEEEeccccccCcCCCCCCCCcchhhH-HHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCCeE
Q psy2406 275 IIFLDEIDKITTRSSQNNNTDISRAGV-QRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIR 353 (464)
Q Consensus 275 VIfIDEIDK~~~~~~~~~~~d~~~~gv-q~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d~i 353 (464)
||||||+|.+...... .. +..|+... .++.+|++++.. .-...+.|.+++||...
T Consensus 136 vlilDEi~~l~~~~~~---------~~~l~~l~~~~--------------~~~~iI~~t~~~-~~~~~l~~~l~sr~~~~ 191 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGG---------DIVLYQLLRSD--------------ANISVIMISNDI-NVRDYMEPRVLSSLGPS 191 (384)
T ss_dssp EEEEETTHHHHHSTTS---------HHHHHHHHTSS--------------SCEEEEEECSST-TTTTTSCHHHHHTCCCE
T ss_pred EEEEECHHHhccCCCC---------ceeHHHHhcCC--------------cceEEEEEECCC-chHhhhCHHHHhcCCCe
Confidence 9999999999754211 12 22333222 456777776411 01146889999999889
Q ss_pred EEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcc
Q psy2406 354 VELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN 433 (464)
Q Consensus 354 V~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~ 433 (464)
+.|+||+.+++.+|+.. .+. ..+ . ...+++++++.|++.+... .+.+|.+.++++.......
T Consensus 192 i~l~~l~~~~~~~il~~----~~~---~~~--~--~~~~~~~~~~~i~~~~~~~-----~G~~r~a~~~l~~a~~~a~-- 253 (384)
T 2qby_B 192 VIFKPYDAEQLKFILSK----YAE---YGL--I--KGTYDDEILSYIAAISAKE-----HGDARKAVNLLFRAAQLAS-- 253 (384)
T ss_dssp EEECCCCHHHHHHHHHH----HHH---HTS--C--TTSCCSHHHHHHHHHHHTT-----CCCHHHHHHHHHHHHHHTT--
T ss_pred EEECCCCHHHHHHHHHH----HHH---hhc--c--cCCcCHHHHHHHHHHHHhc-----cCCHHHHHHHHHHHHHHhc--
Confidence 99999999999999852 111 100 1 2368899999999988532 3779999898888765432
Q ss_pred cCCCceeecHHHHHhHhCC
Q psy2406 434 SNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 434 ~~~~~v~I~~e~v~~~~~~ 452 (464)
..-.|+.+++...+..
T Consensus 254 ---~~~~i~~~~v~~~~~~ 269 (384)
T 2qby_B 254 ---GGGIIRKEHVDKAIVD 269 (384)
T ss_dssp ---SSSCCCHHHHHHHHHH
T ss_pred ---CCCccCHHHHHHHHHH
Confidence 2235788888766544
No 51
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.59 E-value=2.3e-14 Score=139.71 Aligned_cols=124 Identities=24% Similarity=0.304 Sum_probs=90.8
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
++.||+|||+|.+... .++.|+.+++.. ..++.+|+++ +.+..+.|.+.+|+.
T Consensus 102 ~~~vliiDe~~~l~~~-------------~~~~L~~~le~~----------~~~~~~i~~~----~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 102 PFKIIFLDEADALTAD-------------AQAALRRTMEMY----------SKSCRFILSC----NYVSRIIEPIQSRCA 154 (319)
T ss_dssp CCEEEEEETGGGSCHH-------------HHHTTGGGTSSS----------SSSEEEEEEE----SCGGGSCHHHHTTCE
T ss_pred CceEEEEeCCCcCCHH-------------HHHHHHHHHHhc----------CCCCeEEEEe----CChhhcchHHHhhCe
Confidence 5789999999998643 567899999852 2345666665 245578899999996
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
++.|.+++.+++.+++. ..+...|+ .+++++++.|+..+ .++.|.+.+.+++....
T Consensus 155 -~i~~~~~~~~~~~~~l~-----------~~~~~~~~--~i~~~~l~~l~~~~--------~G~~r~~~~~l~~~~~~-- 210 (319)
T 2chq_A 155 -VFRFKPVPKEAMKKRLL-----------EICEKEGV--KITEDGLEALIYIS--------GGDFRKAINALQGAAAI-- 210 (319)
T ss_dssp -EEECCCCCHHHHHHHHH-----------HHHHTTCC--CBCHHHHHHHHHTT--------TTCHHHHHHHHHHHHHS--
T ss_pred -EEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHHc--
Confidence 68999999999988874 22334454 68999999999655 47889988888876431
Q ss_pred cccCCCceeecHHHHHhHhCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~ 452 (464)
.. .||.++|.+.++.
T Consensus 211 ----~~--~i~~~~v~~~~~~ 225 (319)
T 2chq_A 211 ----GE--VVDADTIYQITAT 225 (319)
T ss_dssp ----SS--CBCHHHHHHHTTC
T ss_pred ----CC--CCCHHHHHHHHCC
Confidence 11 4777777776553
No 52
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.59 E-value=1.5e-15 Score=151.28 Aligned_cols=131 Identities=21% Similarity=0.281 Sum_probs=89.0
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeee-eecCceeEeeccCCcccc---CCCCCchhhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLA---KPSDLIPELQ 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~-~i~Tsnil~I~ag~f~~~---~p~~f~PEfl 347 (464)
.+++|||||||.+... .|..||.+|+...+..-.+ .....++.+|++++.... ....|++.|.
T Consensus 96 ~~g~L~LDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~ 162 (304)
T 1ojl_A 96 DGGTLFLDEIGDISPL-------------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLY 162 (304)
T ss_dssp TTSEEEEESCTTCCHH-------------HHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHH
T ss_pred CCCEEEEeccccCCHH-------------HHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHH
Confidence 5789999999999643 6778999998654321111 112345677888753211 1235899999
Q ss_pred ccCCe-EEEcCCCC--HHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHH
Q psy2406 348 GRFPI-RVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 424 (464)
Q Consensus 348 ~R~d~-iV~f~~Lt--~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE 424 (464)
.||.. .|.++||. .+++..++. .+++++...+.. -...+++++++.|....+ .+++|.|+++++
T Consensus 163 ~Rl~~~~i~lPpL~eR~edi~~l~~----~~l~~~~~~~~~--~~~~~s~~a~~~L~~~~w-------pGnvReL~~~l~ 229 (304)
T 1ojl_A 163 YRLNVVAIEMPSLRQRREDIPLLAD----HFLRRFAERNRK--VVKGFTPQAMDLLIHYDW-------PGNIRELENAIE 229 (304)
T ss_dssp HHHSSEEEECCCSGGGGGGHHHHHH----HHHHHHHHHTTC--CCCCBCHHHHHHHHHCCC-------SSHHHHHHHHHH
T ss_pred hhcCeeEEeccCHHHhHhhHHHHHH----HHHHHHHHHhcc--CccCCCHHHHHHHHcCCC-------CCCHHHHHHHHH
Confidence 99954 47899998 577777773 344444333221 235789999999987654 378999999999
Q ss_pred HHHH
Q psy2406 425 KLLE 428 (464)
Q Consensus 425 ~~l~ 428 (464)
+.+.
T Consensus 230 ~~~~ 233 (304)
T 1ojl_A 230 RAVV 233 (304)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 53
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.59 E-value=1.7e-14 Score=143.98 Aligned_cols=142 Identities=16% Similarity=0.080 Sum_probs=90.3
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhcccc---CceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVE---GTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG 348 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLE---G~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~ 348 (464)
.+.||||||+|.+..... .++.|+.+++ .... ..++.+|++++.. .-...+.+.+.+
T Consensus 130 ~~~vlilDEi~~l~~~~~-----------~~~~l~~l~~~~~~~~~--------~~~~~~I~~t~~~-~~~~~l~~~l~~ 189 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPG-----------GQDLLYRITRINQELGD--------RVWVSLVGITNSL-GFVENLEPRVKS 189 (387)
T ss_dssp SEEEEEEETTTHHHHSTT-----------HHHHHHHHHHGGGCC-------------CEEEEECSCS-TTSSSSCHHHHT
T ss_pred CeEEEEEccHhhhcccCC-----------CChHHHhHhhchhhcCC--------CceEEEEEEECCC-chHhhhCHHHHh
Confidence 577999999999974320 2334444443 2100 3456777776411 011468899999
Q ss_pred cCCe-EEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHH
Q psy2406 349 RFPI-RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 427 (464)
Q Consensus 349 R~d~-iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l 427 (464)
|+.. .+.|+||+.+++..|+.. .+. ..+ . ...+++++++.|++.+... .+.+|.+.++++...
T Consensus 190 r~~~~~i~l~~l~~~~~~~il~~----~~~---~~~--~--~~~~~~~~~~~l~~~~~~~-----~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 190 SLGEVELVFPPYTAPQLRDILET----RAE---EAF--N--PGVLDPDVVPLCAALAARE-----HGDARRALDLLRVAG 253 (387)
T ss_dssp TTTSEECCBCCCCHHHHHHHHHH----HHH---HHB--C--TTTBCSSHHHHHHHHHHSS-----SCCHHHHHHHHHHHH
T ss_pred cCCCeEEeeCCCCHHHHHHHHHH----HHH---hhc--c--CCCCCHHHHHHHHHHHHHh-----ccCHHHHHHHHHHHH
Confidence 9986 889999999999999852 111 111 1 2467899999999988532 378899999998876
Q ss_pred HHHhcccCCCceeecHHHHHhHhCC
Q psy2406 428 EEVSFNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 428 ~~~l~~~~~~~v~I~~e~v~~~~~~ 452 (464)
...... ..-.|+.++++..+..
T Consensus 254 ~~a~~~---~~~~i~~~~v~~a~~~ 275 (387)
T 2v1u_A 254 EIAERR---REERVRREHVYSARAE 275 (387)
T ss_dssp HHHHHT---TCSCBCHHHHHHHHHH
T ss_pred HHHHHc---CCCCcCHHHHHHHHHH
Confidence 433211 1235788888776543
No 54
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.58 E-value=2.2e-14 Score=139.77 Aligned_cols=142 Identities=18% Similarity=0.234 Sum_probs=89.5
Q ss_pred CCcEEEEeccccccCcCCCCC-CCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc--
Q psy2406 272 QNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG-- 348 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~-~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~-- 348 (464)
.++++|+||||.+...+.... ..+.......+.++..|+|.. ....+++++++ ++|..++|++++
T Consensus 132 ~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~--------~~~~~i~~a~t----~~p~~ld~~l~r~~ 199 (278)
T 1iy2_A 132 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE--------KDTAIVVMAAT----NRPDILDPALLRPG 199 (278)
T ss_dssp CSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC--------TTCCEEEEEEE----SCTTSSCHHHHSTT
T ss_pred CCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC--------CCCCEEEEEec----CCchhCCHhHcCCC
Confidence 478999999999876543210 111112234456666677642 12334556664 578889999986
Q ss_pred cCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHH-HHHHHHHhhccccCCCccChhHHHHHHHHHH
Q psy2406 349 RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDG-IQRLAEIAYCINERTENIGARRLYTAMEKLL 427 (464)
Q Consensus 349 R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeA-l~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l 427 (464)
||+..|.|.+++.+++.+|++. .+ .+. .+++++ +..||.... .+-+|.|+++++...
T Consensus 200 rf~~~i~i~~p~~~~r~~il~~-----------~~--~~~--~~~~~~~~~~la~~~~-------G~~~~dl~~l~~~a~ 257 (278)
T 1iy2_A 200 RFDRQIAIDAPDVKGREQILRI-----------HA--RGK--PLAEDVDLALLAKRTP-------GFVGADLENLLNEAA 257 (278)
T ss_dssp SSCCEEECCCCCHHHHHHHHHH-----------HH--TTS--CBCTTCCHHHHHHTCT-------TCCHHHHHHHHHHHH
T ss_pred cCCeEEEeCCcCHHHHHHHHHH-----------HH--ccC--CCCcccCHHHHHHHcC-------CCCHHHHHHHHHHHH
Confidence 9999999999999999999841 11 122 344444 667776553 344588999998776
Q ss_pred HHHhcccCCCceeecHHHHHhHh
Q psy2406 428 EEVSFNSNNISLLVDADYVNSRL 450 (464)
Q Consensus 428 ~~~l~~~~~~~v~I~~e~v~~~~ 450 (464)
...... ....||.+++++++
T Consensus 258 ~~a~~~---~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 258 LLAARE---GRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHT---TCCSBCHHHHHHHT
T ss_pred HHHHHh---CCCCcCHHHHHHHh
Confidence 543322 12368999998765
No 55
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.58 E-value=2.6e-14 Score=143.64 Aligned_cols=141 Identities=18% Similarity=0.276 Sum_probs=93.4
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeee--------eeeeecCceeEeeccCCccccCCCCCc
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT--------KYGIIKTDHILFIASGAFHLAKPSDLI 343 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~--------~~~~i~Tsnil~I~ag~f~~~~p~~f~ 343 (464)
.++|+||||+|.+.+. +++.|++.++....+. +........+.+++++ +.+..++
T Consensus 102 ~~~v~~iDE~~~l~~~-------------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at----~~~~~Ls 164 (334)
T 1in4_A 102 RGDVLFIDEIHRLNKA-------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGAT----TRSGLLS 164 (334)
T ss_dssp TTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCCCC---------------CCCEEEEEE----SCGGGSC
T ss_pred CCCEEEEcchhhcCHH-------------HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEec----CCcccCC
Confidence 4679999999998642 5567777665432210 0001112234455543 3566799
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHH
Q psy2406 344 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 423 (464)
Q Consensus 344 PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~I 423 (464)
+.+++||...+.|++++.+++.+|++. . ....+ +.++++++.+||+.+ .+.+|.+.+++
T Consensus 165 ~~l~sR~~l~~~Ld~~~~~~l~~iL~~----~-------~~~~~--~~~~~~~~~~ia~~~--------~G~~R~a~~ll 223 (334)
T 1in4_A 165 SPLRSRFGIILELDFYTVKELKEIIKR----A-------ASLMD--VEIEDAAAEMIAKRS--------RGTPRIAIRLT 223 (334)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHH----H-------HHHTT--CCBCHHHHHHHHHTS--------TTCHHHHHHHH
T ss_pred HHHHHhcCceeeCCCCCHHHHHHHHHH----H-------HHHcC--CCcCHHHHHHHHHhc--------CCChHHHHHHH
Confidence 999999998899999999999999852 1 11234 478999999999876 47889999998
Q ss_pred HHHHHHHhcccCCCceeecHHHHHhHhCCC
Q psy2406 424 EKLLEEVSFNSNNISLLVDADYVNSRLGDL 453 (464)
Q Consensus 424 E~~l~~~l~~~~~~~v~I~~e~v~~~~~~~ 453 (464)
+++..-.... +.-.||.++++..+..+
T Consensus 224 ~~~~~~a~~~---~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 224 KRVRDMLTVV---KADRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHHHHHHH---TCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCCCcCHHHHHHHHHHh
Confidence 8765432211 11257888888776653
No 56
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.57 E-value=7.4e-15 Score=136.86 Aligned_cols=136 Identities=15% Similarity=0.215 Sum_probs=89.6
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.++||||||+|.+.... ..++.|+.+++... ....+.+|++++........+.+.+.+|+.
T Consensus 104 ~~~vliiDe~~~~~~~~-----------~~~~~l~~~l~~~~--------~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~ 164 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHP-----------LWEEAIFDLYNRVA--------EQKRGSLIVSASASPMEAGFVLPDLVSRMH 164 (242)
T ss_dssp GSSEEEEETGGGGTTCH-----------HHHHHHHHHHHHHH--------HHCSCEEEEEESSCTTTTTCCCHHHHHHHH
T ss_pred CCCEEEEeccccccCCH-----------HHHHHHHHHHHHHH--------HcCCCeEEEEcCCCHHHHHHhhhhhhhHhh
Confidence 57899999999986431 13556777765311 111121333332111111135589999996
Q ss_pred --eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHH
Q psy2406 352 --IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 429 (464)
Q Consensus 352 --~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~ 429 (464)
.++.|.+++.+++.+++. ..+...++ .++++++++|++.+ .+..|.+.++++++...
T Consensus 165 ~~~~i~l~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~--------~g~~r~l~~~l~~~~~~ 223 (242)
T 3bos_A 165 WGLTYQLQPMMDDEKLAALQ-----------RRAAMRGL--QLPEDVGRFLLNRM--------ARDLRTLFDVLDRLDKA 223 (242)
T ss_dssp HSEEEECCCCCGGGHHHHHH-----------HHHHHTTC--CCCHHHHHHHHHHT--------TTCHHHHHHHHHHHHHH
T ss_pred cCceEEeCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------cCCHHHHHHHHHHHHHH
Confidence 789999999999999884 12233454 68999999999876 46889999999987654
Q ss_pred HhcccCCCceeecHHHHHhHhC
Q psy2406 430 VSFNSNNISLLVDADYVNSRLG 451 (464)
Q Consensus 430 ~l~~~~~~~v~I~~e~v~~~~~ 451 (464)
...+ . -.||.++|++.+.
T Consensus 224 a~~~---~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 224 SMVH---Q-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHH---T-CCCCHHHHHHHHT
T ss_pred HHHh---C-CCCcHHHHHHHhh
Confidence 4222 1 2589999988764
No 57
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=8.5e-15 Score=145.34 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=91.3
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.||||||+|.+.+. .++.|+.+|+.. ..+..+|+++ +.+..+.|.+.+|+.
T Consensus 133 ~~~vliiDE~~~l~~~-------------~~~~Ll~~le~~----------~~~~~~il~~----~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD-------------AQSALRRTMETY----------SGVTRFCLIC----NYVTRIIDPLASQCS 185 (353)
T ss_dssp SCEEEEETTGGGSCHH-------------HHHHHHHHHHHT----------TTTEEEEEEE----SCGGGSCHHHHHHSE
T ss_pred CceEEEEECCCccCHH-------------HHHHHHHHHHhc----------CCCceEEEEe----CchhhCcchhhccCc
Confidence 5679999999999743 567899988742 1233444443 245568899999997
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
.+.|.+++.+++..++. ..+...++ .++++++++|++.+ .+..|.+.+.++......-
T Consensus 186 -~i~~~~~~~~~~~~~l~-----------~~~~~~~~--~i~~~~l~~l~~~~--------~G~~r~~~~~l~~~~~~~~ 243 (353)
T 1sxj_D 186 -KFRFKALDASNAIDRLR-----------FISEQENV--KCDDGVLERILDIS--------AGDLRRGITLLQSASKGAQ 243 (353)
T ss_dssp -EEECCCCCHHHHHHHHH-----------HHHHTTTC--CCCHHHHHHHHHHT--------SSCHHHHHHHHHHTHHHHH
T ss_pred -eEEeCCCCHHHHHHHHH-----------HHHHHhCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHHhcC
Confidence 67999999999998884 22333454 68899999999887 4678988888887543211
Q ss_pred cccCCCceeecHHHHHhHhCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~ 452 (464)
.......||.++|++.++.
T Consensus 244 --~~~~~~~It~~~v~~~~~~ 262 (353)
T 1sxj_D 244 --YLGDGKNITSTQVEELAGV 262 (353)
T ss_dssp --HHCSCCCCCHHHHHHHHTC
T ss_pred --CCccCccccHHHHHHHhCC
Confidence 0001115888888887663
No 58
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.55 E-value=1.7e-14 Score=150.96 Aligned_cols=139 Identities=22% Similarity=0.235 Sum_probs=93.7
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.++||||||||.+.... ..|+.|+.+++... .....++|++.. ....-..+.+.+++||.
T Consensus 194 ~~~vL~IDEi~~l~~~~-----------~~q~~l~~~l~~l~--------~~~~~iIitt~~-~~~~l~~l~~~L~sR~~ 253 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKT-----------GVQTELFHTFNELH--------DSGKQIVICSDR-EPQKLSEFQDRLVSRFQ 253 (440)
T ss_dssp TCSEEEEECGGGGSSCH-----------HHHHHHHHHHHHHH--------TTTCEEEEEESS-CGGGCSSCCHHHHHHHH
T ss_pred CCCEEEEeCcccccCCh-----------HHHHHHHHHHHHHH--------HCCCeEEEEECC-CHHHHHHHHHHHHhhcc
Confidence 47899999999987431 24567777764210 111223333321 01111238899999996
Q ss_pred --eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHH
Q psy2406 352 --IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 429 (464)
Q Consensus 352 --~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~ 429 (464)
.++.|.+|+.+++..|+.. .+...++ .++++++++|+..+ .+.+|.|.++++++...
T Consensus 254 ~g~~i~l~~p~~e~r~~iL~~-----------~~~~~~~--~i~~e~l~~la~~~--------~gn~R~l~~~L~~~~~~ 312 (440)
T 2z4s_A 254 MGLVAKLEPPDEETRKSIARK-----------MLEIEHG--ELPEEVLNFVAENV--------DDNLRRLRGAIIKLLVY 312 (440)
T ss_dssp SSBCCBCCCCCHHHHHHHHHH-----------HHHHHTC--CCCTTHHHHHHHHC--------CSCHHHHHHHHHHHHHH
T ss_pred CCeEEEeCCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHhc--------CCCHHHHHHHHHHHHHH
Confidence 6789999999999999852 1222344 67899999999776 47899999999987765
Q ss_pred HhcccCCCceeecHHHHHhHhCCCCC
Q psy2406 430 VSFNSNNISLLVDADYVNSRLGDLSI 455 (464)
Q Consensus 430 ~l~~~~~~~v~I~~e~v~~~~~~~~~ 455 (464)
.... + ..||.+.++..+.....
T Consensus 313 a~~~---~-~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 313 KETT---G-KEVDLKEAILLLKDFIK 334 (440)
T ss_dssp HHHS---S-SCCCHHHHHHHTSTTTC
T ss_pred HHHh---C-CCCCHHHHHHHHHHHhh
Confidence 4322 1 25899999999888763
No 59
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.55 E-value=1e-13 Score=127.39 Aligned_cols=124 Identities=19% Similarity=0.322 Sum_probs=90.1
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.||+|||+|.+.+. .++.|+..++.. ..++.+|++++ .+..+.+.+++|+
T Consensus 126 ~~~vlviDe~~~l~~~-------------~~~~l~~~l~~~----------~~~~~~i~~t~----~~~~~~~~l~~r~- 177 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRH-------------SFNALLKTLEEP----------PEHVKFLLATT----DPQKLPVTILSRC- 177 (250)
T ss_dssp SSEEEEEETGGGSCHH-------------HHHHHHHHHHSC----------CTTEEEEEEES----CGGGSCHHHHTTS-
T ss_pred CceEEEEECcccccHH-------------HHHHHHHHHhcC----------CCceEEEEEeC----ChHhCCHHHHHHh-
Confidence 4789999999998532 566888888642 23455666652 3456788999997
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
..+.|++|+.+++.+++. ..+...++ .+++++++.|++.+ .+..|.+.+++++.+..
T Consensus 178 ~~i~l~~l~~~e~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~--------~G~~~~~~~~~~~~~~~-- 234 (250)
T 1njg_A 178 LQFHLKALDVEQIRHQLE-----------HILNEEHI--AHEPRALQLLARAA--------EGSLRDALSLTDQAIAS-- 234 (250)
T ss_dssp EEEECCCCCHHHHHHHHH-----------HHHHHTTC--CBCHHHHHHHHHHH--------TTCHHHHHHHHHHHHTT--
T ss_pred hhccCCCCCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHhc--
Confidence 568999999999999884 12223344 67899999999887 35788888888876421
Q ss_pred cccCCCceeecHHHHHhHhC
Q psy2406 432 FNSNNISLLVDADYVNSRLG 451 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~ 451 (464)
. .. .||.++|++.++
T Consensus 235 ---~-~~-~i~~~~v~~~~~ 249 (250)
T 1njg_A 235 ---G-DG-QVSTQAVSAMLG 249 (250)
T ss_dssp ---T-TS-SBCHHHHHHHSC
T ss_pred ---c-Cc-eecHHHHHHHhC
Confidence 1 12 699999988765
No 60
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=4.9e-14 Score=137.91 Aligned_cols=124 Identities=24% Similarity=0.296 Sum_probs=89.6
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.||+|||+|.+.+. .++.|+.+++.. ..++.+|+++ +.+..+.|.+.+|+.
T Consensus 110 ~~~vliiDe~~~l~~~-------------~~~~L~~~le~~----------~~~~~~i~~~----~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 110 SFKIIFLDEADALTQD-------------AQQALRRTMEMF----------SSNVRFILSC----NYSSKIIEPIQSRCA 162 (327)
T ss_dssp SCEEEEEETGGGSCHH-------------HHHHHHHHHHHT----------TTTEEEEEEE----SCGGGSCHHHHHTEE
T ss_pred CCeEEEEeCCCcCCHH-------------HHHHHHHHHHhc----------CCCCeEEEEe----CCccccCHHHHhhCc
Confidence 5789999999998643 567899988742 2344556554 245568899999997
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
++.|.||+.+++..++. ..+...++ .++++++++|++.+ .++.|.+.+.+++....
T Consensus 163 -~~~~~~l~~~~~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~--------~g~~r~~~~~l~~~~~~-- 218 (327)
T 1iqp_A 163 -IFRFRPLRDEDIAKRLR-----------YIAENEGL--ELTEEGLQAILYIA--------EGDMRRAINILQAAAAL-- 218 (327)
T ss_dssp -EEECCCCCHHHHHHHHH-----------HHHHTTTC--EECHHHHHHHHHHH--------TTCHHHHHHHHHHHHTT--
T ss_pred -EEEecCCCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHHC--------CCCHHHHHHHHHHHHhc--
Confidence 68999999999988874 22334455 68999999999877 46889888888765421
Q ss_pred cccCCCceeecHHHHHhHhCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~ 452 (464)
. -.||.++|....+.
T Consensus 219 -----~-~~i~~~~v~~~~~~ 233 (327)
T 1iqp_A 219 -----D-KKITDENVFMVASR 233 (327)
T ss_dssp -----C-SEECHHHHHHHTTC
T ss_pred -----C-CCCCHHHHHHHHCC
Confidence 1 15777777666543
No 61
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.54 E-value=2.7e-14 Score=141.77 Aligned_cols=137 Identities=15% Similarity=0.182 Sum_probs=86.4
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.++||||||||.+.... ..|+.|+.+++.. ......++++++. ....-..+.|.|++||+
T Consensus 98 ~~~vL~iDEi~~l~~~~-----------~~~~~l~~~l~~~--------~~~~~~iii~~~~-~~~~l~~l~~~L~sR~~ 157 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKE-----------RTQIEFFHIFNTL--------YLLEKQIILASDR-HPQKLDGVSDRLVSRFE 157 (324)
T ss_dssp TCSEEEEECGGGGTTCH-----------HHHHHHHHHHHHH--------HHTTCEEEEEESS-CGGGCTTSCHHHHHHHH
T ss_pred CCCEEEEcCcccccCCh-----------HHHHHHHHHHHHH--------HHCCCeEEEEecC-ChHHHHHhhhHhhhccc
Confidence 47899999999987421 2455666665421 0111223333321 11111258899999996
Q ss_pred --eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHH
Q psy2406 352 --IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 429 (464)
Q Consensus 352 --~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~ 429 (464)
.++.|+| +.+++..|+.. .+...++ .++++++++|++.+ . ++|.|.+++++++..
T Consensus 158 ~~~~i~l~~-~~~e~~~il~~-----------~~~~~~~--~l~~~~l~~l~~~~-g--------~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 158 GGILVEIEL-DNKTRFKIIKE-----------KLKEFNL--ELRKEVIDYLLENT-K--------NVREIEGKIKLIKLK 214 (324)
T ss_dssp TSEEEECCC-CHHHHHHHHHH-----------HHHHTTC--CCCHHHHHHHHHHC-S--------SHHHHHHHHHHHHHH
T ss_pred CceEEEeCC-CHHHHHHHHHH-----------HHHhcCC--CCCHHHHHHHHHhC-C--------CHHHHHHHHHHHHHc
Confidence 7789999 99999999852 1223344 78899999999887 3 579999999887654
Q ss_pred --HhcccCCCceee-cHHHHHhHhCC
Q psy2406 430 --VSFNSNNISLLV-DADYVNSRLGD 452 (464)
Q Consensus 430 --~l~~~~~~~v~I-~~e~v~~~~~~ 452 (464)
..... .....| |.+++.+.++.
T Consensus 215 ~~~~l~~-~~~~~i~t~~~i~~~~~~ 239 (324)
T 1l8q_A 215 GFEGLER-KERKERDKLMQIVEFVAN 239 (324)
T ss_dssp CHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CHHHhcc-ccccCCCCHHHHHHHHHH
Confidence 00000 111357 77777776553
No 62
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.52 E-value=2e-13 Score=136.49 Aligned_cols=125 Identities=19% Similarity=0.323 Sum_probs=91.5
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.||+|||+|.+... .++.|+..++.. ..++++|++++ ++..+.+.+.+|+
T Consensus 119 ~~~vliiDe~~~l~~~-------------~~~~Ll~~le~~----------~~~~~~Il~~~----~~~~l~~~l~sr~- 170 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSRH-------------SFNALLKTLEEP----------PEHVKFLLATT----DPQKLPVTILSRC- 170 (373)
T ss_dssp SSEEEEEECGGGSCHH-------------HHHHHHHHHHSC----------CSSEEEEEEES----CGGGSCHHHHTTS-
T ss_pred CeEEEEEECcchhcHH-------------HHHHHHHHHhcC----------CCceEEEEEeC----ChHhCcHHHHhhe-
Confidence 4689999999998643 567899988752 33556666652 4556889999999
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
.++.|.+|+.+++..++. ..+...|+ .+++++++.|++.+ .+..|.+.+.+++.+..
T Consensus 171 ~~i~~~~l~~~~~~~~l~-----------~~~~~~~~--~~~~~a~~~l~~~~--------~G~~r~~~~~l~~~~~~-- 227 (373)
T 1jr3_A 171 LQFHLKALDVEQIRHQLE-----------HILNEEHI--AHEPRALQLLARAA--------EGSLRDALSLTDQAIAS-- 227 (373)
T ss_dssp EEEECCCCCHHHHHHHHH-----------HHHHHHTC--CBCHHHHHHHHHHS--------SSCHHHHHHHHHHHHHH--
T ss_pred eEeeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHC--------CCCHHHHHHHHHHHHHh--
Confidence 668999999999998884 12223354 68899999999887 46889999999887532
Q ss_pred cccCCCceeecHHHHHhHhCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~ 452 (464)
. .. .||.++|++.++.
T Consensus 228 -~--~~--~i~~~~v~~~~~~ 243 (373)
T 1jr3_A 228 -G--DG--QVSTQAVSAMLGT 243 (373)
T ss_dssp -T--TT--CBCHHHHHHHTTC
T ss_pred -c--CC--cccHHHHHHHhCC
Confidence 1 12 4788888776654
No 63
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=1.8e-13 Score=133.63 Aligned_cols=124 Identities=21% Similarity=0.298 Sum_probs=89.4
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.||+|||+|.+... .++.|+++++.. ..++.+|+++ +.+..+.|.+.+|+.
T Consensus 107 ~~~viiiDe~~~l~~~-------------~~~~L~~~le~~----------~~~~~~il~~----~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-------------AQQALRRTMELY----------SNSTRFAFAC----NQSNKIIEPLQSQCA 159 (323)
T ss_dssp CCEEEEEESGGGSCHH-------------HHHTTHHHHHHT----------TTTEEEEEEE----SCGGGSCHHHHTTSE
T ss_pred CceEEEEECcccCCHH-------------HHHHHHHHHhcc----------CCCceEEEEe----CChhhchhHHHhhce
Confidence 4789999999998643 466889888741 2344555554 245568899999996
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
++.|.+|+.+++.+++.. .+...|+ .+++++++.|++.+ .+..|.+.+.+++.....
T Consensus 160 -~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~~~~l~~~~--------~G~~r~a~~~l~~~~~~~- 216 (323)
T 1sxj_B 160 -ILRYSKLSDEDVLKRLLQ-----------IIKLEDV--KYTNDGLEAIIFTA--------EGDMRQAINNLQSTVAGH- 216 (323)
T ss_dssp -EEECCCCCHHHHHHHHHH-----------HHHHHTC--CBCHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHH-
T ss_pred -EEeecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHhcC-
Confidence 689999999999998841 1222344 58899999999887 467888889888765321
Q ss_pred cccCCCceeecHHHHHhHhCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~ 452 (464)
-.||.++|.+.++.
T Consensus 217 -------~~i~~~~v~~~~~~ 230 (323)
T 1sxj_B 217 -------GLVNADNVFKIVDS 230 (323)
T ss_dssp -------SSBCHHHHHHHHTS
T ss_pred -------CCcCHHHHHHHHCC
Confidence 14677777766554
No 64
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.49 E-value=2.5e-13 Score=144.73 Aligned_cols=154 Identities=19% Similarity=0.182 Sum_probs=91.6
Q ss_pred CcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCCe
Q psy2406 273 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 352 (464)
Q Consensus 273 ~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d~ 352 (464)
++|+|||||+++.+. +|+.||++|+.+.+...+........++|+|++. ......+.+++++||..
T Consensus 110 ~~IL~IDEI~r~~~~-------------~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~-lpe~~~~~~aLldRF~~ 175 (500)
T 3nbx_X 110 AEIVFLDEIWKAGPA-------------ILNTLLTAINERQFRNGAHVEKIPMRLLVAASNE-LPEADSSLEALYDRMLI 175 (500)
T ss_dssp CSEEEEESGGGCCHH-------------HHHHHHHHHHSSEEECSSSEEECCCCEEEEEESS-CCCTTCTTHHHHTTCCE
T ss_pred ceeeeHHhHhhhcHH-------------HHHHHHHHHHHHhccCCCCcCCcchhhhhhcccc-CCCccccHHHHHHHHHH
Confidence 679999999987643 7889999998766654222222222234555531 11122477899999999
Q ss_pred EEEcCCCCH-HHHHHHHHhhHH--------------HHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhc--cccCCCccC
Q psy2406 353 RVELDSLSI-SDFTRIMTSTNV--------------CLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC--INERTENIG 415 (464)
Q Consensus 353 iV~f~~Lt~-~el~~Il~~~~~--------------~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~--~~~~~~~~G 415 (464)
.+.+++++. ++...|+..... ..+..+++.. . .+.++++++++|++.... ........+
T Consensus 176 ~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~--~--~v~v~d~v~e~i~~l~~~lr~~r~~~~iS 251 (500)
T 3nbx_X 176 RLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEI--G--EITLPDHVFELIFMLRQQLDKLPDAPYVS 251 (500)
T ss_dssp EEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHH--T--TCBCCHHHHHHHHHHHHHHHHCSSSCCCC
T ss_pred HHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcC--C--cccCchHHHHHHHHHHHHhhcCCCCCccc
Confidence 999999987 677888864210 0112222221 2 357899999999987731 011122467
Q ss_pred hhHHHHHHHHHHHHHhcccCCCceeecHHHHH
Q psy2406 416 ARRLYTAMEKLLEEVSFNSNNISLLVDADYVN 447 (464)
Q Consensus 416 AR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~ 447 (464)
.|.+..++...-.-. .+... -.|++++|.
T Consensus 252 ~R~~~~llr~A~A~A--~l~gr-~~Vt~eDv~ 280 (500)
T 3nbx_X 252 DRRWKKAIRLLQASA--FFSGR-SAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHHHHHHH--HHTTC-SBCCGGGGG
T ss_pred hhHHHHHHHHHHHHH--hhcCC-ccccchHHH
Confidence 888877775432211 12212 246677766
No 65
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=5.8e-14 Score=152.35 Aligned_cols=162 Identities=15% Similarity=0.142 Sum_probs=97.1
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeee-ee--eecCceeEeeccCCccccC---------C
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK-YG--IIKTDHILFIASGAFHLAK---------P 339 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~-~~--~i~Tsnil~I~ag~f~~~~---------p 339 (464)
.++|+||||||++.+. +|+.||++||.+.++.. .+ .-...++.+|+|++..... .
T Consensus 391 ~~gil~IDEid~l~~~-------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~n 457 (595)
T 3f9v_A 391 DGGIAVIDEIDKMRDE-------------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDN 457 (595)
T ss_dssp SSSEECCTTTTCCCSH-------------HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTT
T ss_pred CCCcEEeehhhhCCHh-------------HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhc
Confidence 6799999999999754 67899999997776532 22 2223556777776421100 0
Q ss_pred CCCchhhhccCCeEEEcCCCCHHHHHHHHHhhHH-------------HHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhc
Q psy2406 340 SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNV-------------CLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 406 (464)
Q Consensus 340 ~~f~PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~-------------~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~ 406 (464)
-.++|+|++|||.++.+.++...+...|++.... ..++++..... ..+.-.+++++.+.|++....
T Consensus 458 i~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar-~~~~p~ls~ea~~~l~~~y~~ 536 (595)
T 3f9v_A 458 INLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYAR-KYVTPKITSEAKNLITDFFVE 536 (595)
T ss_dssp TCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHH-HHHCCCCCCCTHHHHHHHHTT
T ss_pred cCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHH
Confidence 1688999999997777777766654444431100 01222222211 122337889999999988542
Q ss_pred ccc-------CCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHh
Q psy2406 407 INE-------RTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRL 450 (464)
Q Consensus 407 ~~~-------~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~ 450 (464)
.-. ......+|.|.+++...-.-. .+... -.|+.++|..++
T Consensus 537 lR~~~~~~~~~~~~~s~R~l~~lirla~a~A--~l~~~-~~V~~~dv~~Ai 584 (595)
T 3f9v_A 537 MRKKSSETPDSPILITPRQLEALIRISEAYA--KMALK-AEVTREDAERAI 584 (595)
T ss_dssp SSCSCCBCSSSCBCSSTTTTTHHHHHHHHHH--HTTSS-CCSSHHHHHHHH
T ss_pred HHHhhccCCCccccccHHHHHHHHHHHHHHH--HHhCc-CCCCHHHHHHHH
Confidence 100 012578999998887432221 22222 368888887764
No 66
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=6.7e-13 Score=132.34 Aligned_cols=108 Identities=19% Similarity=0.269 Sum_probs=81.6
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
++.||+|||++.+... .++.|+..|+.. ..+..+|+++ .++..+.|.+.+|+
T Consensus 134 ~~~vlilDE~~~L~~~-------------~~~~L~~~le~~----------~~~~~~Il~t----~~~~~l~~~l~sR~- 185 (354)
T 1sxj_E 134 RYKCVIINEANSLTKD-------------AQAALRRTMEKY----------SKNIRLIMVC----DSMSPIIAPIKSQC- 185 (354)
T ss_dssp CCEEEEEECTTSSCHH-------------HHHHHHHHHHHS----------TTTEEEEEEE----SCSCSSCHHHHTTS-
T ss_pred CCeEEEEeCccccCHH-------------HHHHHHHHHHhh----------cCCCEEEEEe----CCHHHHHHHHHhhc-
Confidence 5789999999996432 567888888731 1234555554 35667889999999
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeC-HHHHHHHHHHhhccccCCCccChhHHHHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFV-DDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 428 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~s-deAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~ 428 (464)
.++.|++++.+++.+++.. .+..+|+ .++ +++++.|++.+ .++.|.+.+.+++...
T Consensus 186 ~~~~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~~l~~i~~~~--------~G~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 186 LLIRCPAPSDSEISTILSD-----------VVTNERI--QLETKDILKRIAQAS--------NGNLRVSLLMLESMAL 242 (354)
T ss_dssp EEEECCCCCHHHHHHHHHH-----------HHHHHTC--EECCSHHHHHHHHHH--------TTCHHHHHHHHTHHHH
T ss_pred eEEecCCcCHHHHHHHHHH-----------HHHHcCC--CCCcHHHHHHHHHHc--------CCCHHHHHHHHHHHHH
Confidence 6789999999999988841 2223455 788 99999999887 4789999999998764
No 67
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=1e-12 Score=130.78 Aligned_cols=142 Identities=18% Similarity=0.115 Sum_probs=88.0
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.||+|||+|.+...... .....|+..++.. ...++.+|++++.. .-...+.+.+.+|+.
T Consensus 128 ~~~vlilDE~~~l~~~~~~---------~~l~~l~~~~~~~---------~~~~~~~I~~~~~~-~~~~~~~~~~~~r~~ 188 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYND---------DILYKLSRINSEV---------NKSKISFIGITNDV-KFVDLLDPRVKSSLS 188 (386)
T ss_dssp SCEEEEEETHHHHHHSSCS---------THHHHHHHHHHSC---------CC--EEEEEEESCG-GGGGGCTTHHHHTTT
T ss_pred CeEEEEEcChhhhhccCcC---------HHHHHHhhchhhc---------CCCeEEEEEEECCC-ChHhhhCHHHhccCC
Confidence 4789999999998754211 1344555555421 23456667765311 001346788899996
Q ss_pred e-EEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHH
Q psy2406 352 I-RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 430 (464)
Q Consensus 352 ~-iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~ 430 (464)
. .+.|+||+.+++.+++.. .+ ........+++++++.|++.+... .+.+|.+.++++......
T Consensus 189 ~~~i~l~~l~~~~~~~il~~----~~-------~~~~~~~~~~~~~~~~l~~~~~~~-----~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 189 EEEIIFPPYNAEELEDILTK----RA-------QMAFKPGVLPDNVIKLCAALAARE-----HGDARRALDLLRVSGEIA 252 (386)
T ss_dssp TEEEEECCCCHHHHHHHHHH----HH-------HHHBCSSCSCHHHHHHHHHHHHHT-----TCCHHHHHHHHHHHHHHH
T ss_pred CeeEEeCCCCHHHHHHHHHH----HH-------HhhccCCCCCHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHH
Confidence 3 799999999999999852 11 111123478999999999887431 267888888887765432
Q ss_pred hcccCCCceeecHHHHHhHhC
Q psy2406 431 SFNSNNISLLVDADYVNSRLG 451 (464)
Q Consensus 431 l~~~~~~~v~I~~e~v~~~~~ 451 (464)
..+ ..-.|+.++++.++.
T Consensus 253 ~~~---~~~~i~~~~v~~a~~ 270 (386)
T 2qby_A 253 ERM---KDTKVKEEYVYMAKE 270 (386)
T ss_dssp HHT---TCSSCCHHHHHHHHH
T ss_pred Hhc---CCCccCHHHHHHHHH
Confidence 211 112567777765543
No 68
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.47 E-value=1.2e-12 Score=131.17 Aligned_cols=147 Identities=14% Similarity=0.113 Sum_probs=90.4
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.||||||+|.+.. ..+..|+.+++...- ....++.+|++++.. .-+..+.+.+.+|+.
T Consensus 125 ~~~vlilDE~~~l~~-------------~~~~~L~~~~~~~~~------~~~~~~~iI~~~~~~-~~~~~l~~~~~~r~~ 184 (389)
T 1fnn_A 125 LYMFLVLDDAFNLAP-------------DILSTFIRLGQEADK------LGAFRIALVIVGHND-AVLNNLDPSTRGIMG 184 (389)
T ss_dssp CCEEEEEETGGGSCH-------------HHHHHHHHHTTCHHH------HSSCCEEEEEEESST-HHHHTSCHHHHHHHT
T ss_pred CeEEEEEECccccch-------------HHHHHHHHHHHhCCC------CCcCCEEEEEEECCc-hHHHHhCHHhhhcCC
Confidence 578999999999832 256678887764210 001355666654310 001357888999998
Q ss_pred e-EEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhcccc-CCCccChhHHHHHHHHHHHH
Q psy2406 352 I-RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINE-RTENIGARRLYTAMEKLLEE 429 (464)
Q Consensus 352 ~-iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~-~~~~~GAR~L~r~IE~~l~~ 429 (464)
. .+.|+||+.+++.+++.. .+. .. +....+++++++.|++.+..... ....+.+|.+.++++.....
T Consensus 185 ~~~i~~~pl~~~~~~~~l~~----~~~---~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~ 253 (389)
T 1fnn_A 185 KYVIRFSPYTKDQIFDILLD----RAK---AG----LAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYA 253 (389)
T ss_dssp TCEEECCCCBHHHHHHHHHH----HHH---HH----BCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHH----HHH---hh----cCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHH
Confidence 5 789999999999999852 111 11 11226899999999998842000 00025689999998876653
Q ss_pred HhcccCCCceeecHHHHHhHhCC
Q psy2406 430 VSFNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 430 ~l~~~~~~~v~I~~e~v~~~~~~ 452 (464)
...+ ..-.|+.+++......
T Consensus 254 a~~~---~~~~i~~~~v~~~~~~ 273 (389)
T 1fnn_A 254 AQQN---GRKHIAPEDVRKSSKE 273 (389)
T ss_dssp HHHT---TCSSCCHHHHHHHHHH
T ss_pred HHHh---CCCCcCHHHHHHHHHH
Confidence 3211 1124777777665443
No 69
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=1.2e-13 Score=146.86 Aligned_cols=109 Identities=12% Similarity=0.238 Sum_probs=72.8
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.++||||||||.+..... +..+.|+++++... ..+++|++.. .+..+ +.|.+|+
T Consensus 148 ~~~vliIDEid~l~~~~~----------~~l~~L~~~l~~~~----------~~iIli~~~~----~~~~l-~~l~~r~- 201 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDR----------GGVGQLAQFCRKTS----------TPLILICNER----NLPKM-RPFDRVC- 201 (516)
T ss_dssp TSEEEEECSGGGCCTTST----------THHHHHHHHHHHCS----------SCEEEEESCT----TSSTT-GGGTTTS-
T ss_pred CCeEEEEECCCccchhhH----------HHHHHHHHHHHhcC----------CCEEEEEcCC----CCccc-hhhHhce-
Confidence 678999999999975422 13457777776321 1244555431 11223 4466655
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 427 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l 427 (464)
..+.|++++.+++.+++. ..+..+++ .+++++++.|++.+ .++.|.+.+.++...
T Consensus 202 ~~i~f~~~~~~~~~~~L~-----------~i~~~~~~--~i~~~~l~~la~~s--------~GdiR~~i~~L~~~~ 256 (516)
T 1sxj_A 202 LDIQFRRPDANSIKSRLM-----------TIAIREKF--KLDPNVIDRLIQTT--------RGDIRQVINLLSTIS 256 (516)
T ss_dssp EEEECCCCCHHHHHHHHH-----------HHHHHHTC--CCCTTHHHHHHHHT--------TTCHHHHHHHHTHHH
T ss_pred EEEEeCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCcHHHHHHHHHHHH
Confidence 578999999999998884 12223354 57899999999876 467899988887653
No 70
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=7.7e-13 Score=132.49 Aligned_cols=129 Identities=21% Similarity=0.267 Sum_probs=88.5
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.|++|||+|.+... .|+.|+.+++.. ..+..+|+++ +.+..+.|.+++|+.
T Consensus 110 ~~~viiiDe~~~l~~~-------------~~~~L~~~le~~----------~~~~~~il~~----n~~~~i~~~i~sR~~ 162 (340)
T 1sxj_C 110 GFKLIILDEADAMTNA-------------AQNALRRVIERY----------TKNTRFCVLA----NYAHKLTPALLSQCT 162 (340)
T ss_dssp SCEEEEETTGGGSCHH-------------HHHHHHHHHHHT----------TTTEEEEEEE----SCGGGSCHHHHTTSE
T ss_pred CceEEEEeCCCCCCHH-------------HHHHHHHHHhcC----------CCCeEEEEEe----cCccccchhHHhhce
Confidence 3689999999998643 567899998742 2334455554 345568899999996
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHh
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 431 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l 431 (464)
++.|.+++.+++.+++. ..+..+++ .+++++++.|++.+ .+..|.+.+.++....
T Consensus 163 -~~~~~~l~~~~~~~~l~-----------~~~~~~~~--~i~~~~~~~i~~~s--------~G~~r~~~~~l~~~~~--- 217 (340)
T 1sxj_C 163 -RFRFQPLPQEAIERRIA-----------NVLVHEKL--KLSPNAEKALIELS--------NGDMRRVLNVLQSCKA--- 217 (340)
T ss_dssp -EEECCCCCHHHHHHHHH-----------HHHHTTTC--CBCHHHHHHHHHHH--------TTCHHHHHHHTTTTTT---
T ss_pred -eEeccCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 57999999999888874 22333454 67899999999887 4678887777765421
Q ss_pred cccCCCceeecHHHHHhHhCC
Q psy2406 432 FNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 432 ~~~~~~~v~I~~e~v~~~~~~ 452 (464)
+........||.+.|...++.
T Consensus 218 ~~~~~~~~~it~~~v~~~~~~ 238 (340)
T 1sxj_C 218 TLDNPDEDEISDDVIYECCGA 238 (340)
T ss_dssp TTCSSSCCCBCHHHHHHHTTC
T ss_pred hcCCcccccccHHHHHHHhCC
Confidence 111111125788888776553
No 71
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.45 E-value=3.3e-13 Score=151.69 Aligned_cols=108 Identities=19% Similarity=0.329 Sum_probs=62.7
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.++||||||||.+.+.....+ ....++.|+++++.+ ++.+|++++.........+|+|++||+
T Consensus 263 ~~~iL~IDEi~~l~~~~~~~g-----~~~~~~~L~~~l~~~------------~i~~I~at~~~~~~~~~~d~aL~rRf~ 325 (854)
T 1qvr_A 263 GEVILFIDELHTVVGAGKAEG-----AVDAGNMLKPALARG------------ELRLIGATTLDEYREIEKDPALERRFQ 325 (854)
T ss_dssp SSEEEEECCC------------------------HHHHHTT------------CCCEEEEECHHHHHHHTTCTTTCSCCC
T ss_pred CCeEEEEecHHHHhccCCccc-----hHHHHHHHHHHHhCC------------CeEEEEecCchHHhhhccCHHHHhCCc
Confidence 578999999999976543211 112455777777643 345666653211001246799999999
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhc
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 406 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~ 406 (464)
. |.|++|+.+++..|++ .++..+. ..+++ .++++++..+++.+..
T Consensus 326 ~-i~l~~p~~~e~~~iL~----~~~~~~~---~~~~~--~i~~~al~~~~~ls~r 370 (854)
T 1qvr_A 326 P-VYVDEPTVEETISILR----GLKEKYE---VHHGV--RISDSAIIAAATLSHR 370 (854)
T ss_dssp C-EEECCCCHHHHHHHHH----HHHHHHH---HHTTC--EECHHHHHHHHHHHHH
T ss_pred e-EEeCCCCHHHHHHHHH----hhhhhhh---hhcCC--CCCHHHHHHHHHHHhh
Confidence 6 7999999999999994 3443332 23444 7889999999988754
No 72
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.45 E-value=6.6e-14 Score=124.76 Aligned_cols=79 Identities=18% Similarity=0.274 Sum_probs=49.6
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccc-cCCCCCchhhhccC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL-AKPSDLIPELQGRF 350 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~-~~p~~f~PEfl~R~ 350 (464)
.++||||||+|.+.+..... ....+++.|.++++. .++.+|++++... .....+.|.|++||
T Consensus 115 ~~~vl~iDe~~~l~~~~~~~-----~~~~~~~~l~~~~~~------------~~~~~i~~~~~~~~~~~~~~~~~l~~r~ 177 (195)
T 1jbk_A 115 GNVILFIDELHTMVGAGKAD-----GAMDAGNMLKPALAR------------GELHCVGATTLDEYRQYIEKDAALERRF 177 (195)
T ss_dssp TTEEEEEETGGGGTT-----------CCCCHHHHHHHHHT------------TSCCEEEEECHHHHHHHTTTCHHHHTTE
T ss_pred CCeEEEEeCHHHHhccCccc-----chHHHHHHHHHhhcc------------CCeEEEEeCCHHHHHHHHhcCHHHHHHh
Confidence 57799999999997553210 011245566666653 2445666653110 00125789999999
Q ss_pred CeEEEcCCCCHHHHHHHH
Q psy2406 351 PIRVELDSLSISDFTRIM 368 (464)
Q Consensus 351 d~iV~f~~Lt~~el~~Il 368 (464)
+ .+.|.+++.+++.+|+
T Consensus 178 ~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 178 Q-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp E-EEECCCCCHHHHHTTC
T ss_pred c-eeecCCCCHHHHHHHh
Confidence 8 4799999999988765
No 73
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.45 E-value=2.4e-12 Score=142.23 Aligned_cols=148 Identities=19% Similarity=0.304 Sum_probs=90.2
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccc-cCCCCCchhhhccC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL-AKPSDLIPELQGRF 350 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~-~~p~~f~PEfl~R~ 350 (464)
.++||||||||.+.+.+.. .......++.|.++++.+ ++.+|++++... ......+|+|.+||
T Consensus 278 ~~~iL~IDEi~~l~~~~~~----~~~~~~~~~~L~~~l~~~------------~~~~I~at~~~~~~~~~~~d~aL~~Rf 341 (758)
T 1r6b_X 278 TNSILFIDEIHTIIGAGAA----SGGQVDAANLIKPLLSSG------------KIRVIGSTTYQEFSNIFEKDRALARRF 341 (758)
T ss_dssp SCEEEEETTTTTTTTSCCS----SSCHHHHHHHHSSCSSSC------------CCEEEEEECHHHHHCCCCCTTSSGGGE
T ss_pred CCeEEEEechHHHhhcCCC----CcchHHHHHHHHHHHhCC------------CeEEEEEeCchHHhhhhhcCHHHHhCc
Confidence 4789999999999865432 112233566788887643 345666654211 12334678999999
Q ss_pred CeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChh----HHHHHHHHH
Q psy2406 351 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGAR----RLYTAMEKL 426 (464)
Q Consensus 351 d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR----~L~r~IE~~ 426 (464)
+ .|.|.+++.+++.+|+. .+...+.. .++ +.++++++..++..+... .+.| .+..++...
T Consensus 342 ~-~i~v~~p~~~e~~~il~----~l~~~~~~---~~~--v~~~~~al~~~~~~s~~~------i~~~~lp~~~i~lld~a 405 (758)
T 1r6b_X 342 Q-KIDITEPSIEETVQIIN----GLKPKYEA---HHD--VRYTAKAVRAAVELAVKY------INDRHLPDKAIDVIDEA 405 (758)
T ss_dssp E-EEECCCCCHHHHHHHHH----HHHHHHHH---HHT--CCCCHHHHHHHHHHHHHH------CTTSCTTHHHHHHHHHH
T ss_pred e-EEEcCCCCHHHHHHHHH----HHHHHHHH---hcC--CCCCHHHHHHHHHHhhhh------cccccCchHHHHHHHHH
Confidence 8 58999999999999995 33333322 234 468899999999887652 2332 344444443
Q ss_pred HHHHhcccC-CCceeecHHHHHhHhC
Q psy2406 427 LEEVSFNSN-NISLLVDADYVNSRLG 451 (464)
Q Consensus 427 l~~~l~~~~-~~~v~I~~e~v~~~~~ 451 (464)
......... .....|+.+++...+.
T Consensus 406 ~~~~~~~~~~~~~~~v~~~di~~~~~ 431 (758)
T 1r6b_X 406 GARARLMPVSKRKKTVNVADIESVVA 431 (758)
T ss_dssp HHHHHHSSSCCCCCSCCHHHHHHHHH
T ss_pred HHHHhcccccccCCccCHHHHHHHHH
Confidence 322211111 1224577777776654
No 74
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.39 E-value=9.9e-13 Score=138.44 Aligned_cols=96 Identities=21% Similarity=0.310 Sum_probs=60.8
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCcccc-CCCCCchhhhccC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLA-KPSDLIPELQGRF 350 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~-~p~~f~PEfl~R~ 350 (464)
.++||||| . . . ..++.|++.|+.+ ++.+|++++...- +...++|+|.+||
T Consensus 267 ~~~iLfiD-----~-~------~-----~a~~~L~~~L~~g------------~v~vI~at~~~e~~~~~~~~~al~~Rf 317 (468)
T 3pxg_A 267 GNIILFID-----A-A------I-----DASNILKPSLARG------------ELQCIGATTLDEYRKYIEKDAALERRF 317 (468)
T ss_dssp CCCEEEEC-----C--------------------CCCTTSS------------SCEEEEECCTTTTHHHHTTCSHHHHSE
T ss_pred CCeEEEEe-----C-c------h-----hHHHHHHHhhcCC------------CEEEEecCCHHHHHHHhhcCHHHHHhC
Confidence 57899999 1 0 1 1456899988743 3567777642100 0014789999999
Q ss_pred CeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhc
Q psy2406 351 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 406 (464)
Q Consensus 351 d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~ 406 (464)
.. |.|++|+.+++..|+.. +...+ ...++ +.++++++..++..+..
T Consensus 318 ~~-i~v~~p~~e~~~~iL~~----~~~~~---~~~~~--~~i~~~al~~l~~~s~~ 363 (468)
T 3pxg_A 318 QP-IQVDQPSVDESIQILQG----LRDRY---EAHHR--VSITDDAIEAAVKLSDR 363 (468)
T ss_dssp EE-EECCCCCHHHHHHHHHH----TTTTS---GGGSS--CSCCHHHHHHHHHHHHH
T ss_pred cc-ceeCCCCHHHHHHHHHH----HHHHH---HHhcC--CCCCHHHHHHHHHHHHH
Confidence 75 89999999999999852 22211 12244 46889999999987754
No 75
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.37 E-value=1.7e-12 Score=145.47 Aligned_cols=84 Identities=24% Similarity=0.474 Sum_probs=64.5
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhc--c
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--R 349 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~--R 349 (464)
.++|+||||||.+.+.+.. ........++..|+.+|+|.. ...++++|+++ +.+..++|.+.+ |
T Consensus 297 ~p~il~iDEid~l~~~~~~--~~~~~~~~~~~~Ll~ll~g~~--------~~~~v~vI~at----n~~~~ld~al~r~gR 362 (806)
T 1ypw_A 297 APAIIFIDELDAIAPKREK--THGEVERRIVSQLLTLMDGLK--------QRAHVIVMAAT----NRPNSIDPALRRFGR 362 (806)
T ss_dssp CSEEEEEESGGGTSCTTSC--CCSHHHHHHHHHHHHHHHSSC--------TTSCCEEEEEC----SCTTTSCTTTTSTTS
T ss_pred CCcEEEeccHHHhhhcccc--ccchHHHHHHHHHHHHhhhhc--------ccccEEEeccc----CCchhcCHHHhcccc
Confidence 4799999999999877543 112233457778999998742 23567778776 467788898876 9
Q ss_pred CCeEEEcCCCCHHHHHHHHH
Q psy2406 350 FPIRVELDSLSISDFTRIMT 369 (464)
Q Consensus 350 ~d~iV~f~~Lt~~el~~Il~ 369 (464)
|+..+.+..++.+++.+|+.
T Consensus 363 f~~~i~i~~p~~~~r~~il~ 382 (806)
T 1ypw_A 363 FDREVDIGIPDATGRLEILQ 382 (806)
T ss_dssp SCEEECCCCCCHHHHHHHHH
T ss_pred cccccccCCCCHHHHHHHHH
Confidence 99999999999999999984
No 76
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.37 E-value=4.7e-12 Score=127.17 Aligned_cols=100 Identities=11% Similarity=0.140 Sum_probs=76.2
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.||+|||+|++... .++.||+.||.. ..+++||+++ +++..+.|.+++|+.
T Consensus 108 ~~kvviIdead~l~~~-------------a~naLLk~lEep----------~~~~~~Il~t----~~~~~l~~ti~SRc~ 160 (334)
T 1a5t_A 108 GAKVVWVTDAALLTDA-------------AANALLKTLEEP----------PAETWFFLAT----REPERLLATLRSRCR 160 (334)
T ss_dssp SCEEEEESCGGGBCHH-------------HHHHHHHHHTSC----------CTTEEEEEEE----SCGGGSCHHHHTTSE
T ss_pred CcEEEEECchhhcCHH-------------HHHHHHHHhcCC----------CCCeEEEEEe----CChHhCcHHHhhcce
Confidence 5789999999999743 567999999852 3455666665 356779999999995
Q ss_pred eEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEK 425 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~ 425 (464)
++.|.+++.+++.+++.. . . .++++++..+++.+ .++.|.+.+.+++
T Consensus 161 -~~~~~~~~~~~~~~~L~~-----------~----~---~~~~~~~~~l~~~s--------~G~~r~a~~~l~~ 207 (334)
T 1a5t_A 161 -LHYLAPPPEQYAVTWLSR-----------E----V---TMSQDALLAALRLS--------AGSPGAALALFQG 207 (334)
T ss_dssp -EEECCCCCHHHHHHHHHH-----------H----C---CCCHHHHHHHHHHT--------TTCHHHHHHTTSS
T ss_pred -eeeCCCCCHHHHHHHHHH-----------h----c---CCCHHHHHHHHHHc--------CCCHHHHHHHhcc
Confidence 689999999999888741 1 1 57899999999877 4667777665543
No 77
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.35 E-value=1.4e-12 Score=134.04 Aligned_cols=145 Identities=17% Similarity=0.212 Sum_probs=99.5
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee-eeecCceeEeeccCCccc---cCCCCCchhhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHL---AKPSDLIPELQ 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~-~~i~Tsnil~I~ag~f~~---~~p~~f~PEfl 347 (464)
.++++|||||+.+... +|..||++|+.+.+..-. ......++.+|+|++... .....|++.|.
T Consensus 231 ~~gtlfldei~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~ 297 (387)
T 1ny5_A 231 DGGTLFLDEIGELSLE-------------AQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLY 297 (387)
T ss_dssp TTSEEEEESGGGCCHH-------------HHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHH
T ss_pred CCcEEEEcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHH
Confidence 6899999999999754 788999999855443211 112234567788875322 12346999999
Q ss_pred ccCCe-EEEcCCCCH--HHHHHHHHhhHHHHHHHHHHHHhhcCce-eEeCHHHHHHHHHHhhccccCCCccChhHHHHHH
Q psy2406 348 GRFPI-RVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 423 (464)
Q Consensus 348 ~R~d~-iV~f~~Lt~--~el~~Il~~~~~~ll~~~~~ll~~~gi~-L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~I 423 (464)
.|+.. .|.++||.+ +++..++ ..+++++.+. .+.. ..++++|++.|..+.+ -+++|.|+++|
T Consensus 298 ~rl~~~~i~lPpLreR~~Di~~l~----~~~l~~~~~~---~~~~~~~~~~~a~~~l~~~~w-------pGNvreL~~~i 363 (387)
T 1ny5_A 298 YRLGVIEIEIPPLRERKEDIIPLA----NHFLKKFSRK---YAKEVEGFTKSAQELLLSYPW-------YGNVRELKNVI 363 (387)
T ss_dssp HHHTTEEEECCCGGGCHHHHHHHH----HHHHHHHHHH---TTCCCCEECHHHHHHHHHSCC-------TTHHHHHHHHH
T ss_pred HhhcCCeecCCcchhccccHHHHH----HHHHHHHHHH---cCCCCCCCCHHHHHHHHhCCC-------CcHHHHHHHHH
Confidence 99864 478888875 7777777 3455554433 3433 4699999999987554 47899999999
Q ss_pred HHHHHHHhcccCCCceeecHHHHHhH
Q psy2406 424 EKLLEEVSFNSNNISLLVDADYVNSR 449 (464)
Q Consensus 424 E~~l~~~l~~~~~~~v~I~~e~v~~~ 449 (464)
++.+... . + -.|+.+++...
T Consensus 364 ~~~~~~~----~-~-~~i~~~~l~~~ 383 (387)
T 1ny5_A 364 ERAVLFS----E-G-KFIDRGELSCL 383 (387)
T ss_dssp HHHHHHC----C-S-SEECHHHHHHH
T ss_pred HHHHHhC----C-C-CcCcHHHCcHh
Confidence 9876531 1 2 26888887544
No 78
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.34 E-value=4.5e-13 Score=137.11 Aligned_cols=131 Identities=20% Similarity=0.256 Sum_probs=93.1
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeee-eeecCceeEeeccCCccc---cCCCCCchhhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHL---AKPSDLIPELQ 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~-~~i~Tsnil~I~ag~f~~---~~p~~f~PEfl 347 (464)
..+++|||||+.+.+. +|..||++|+.+.+..-. ......++.+|++++... .....|++.|.
T Consensus 222 ~~gtlfldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~ 288 (368)
T 3dzd_A 222 DQGTLFLDEVGELDQR-------------VQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLY 288 (368)
T ss_dssp TTSEEEEETGGGSCHH-------------HHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHH
T ss_pred CCCeEEecChhhCCHH-------------HHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHH
Confidence 6789999999999754 788999999855443211 111233556788875322 12356999999
Q ss_pred ccCCeE-EEcCCCCH--HHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHH
Q psy2406 348 GRFPIR-VELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 424 (464)
Q Consensus 348 ~R~d~i-V~f~~Lt~--~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE 424 (464)
.|+..+ |.++||.+ +++..++ ..+++++...+.. -...++++|++.|..+.+ .+..|.|+++|+
T Consensus 289 ~rl~~~~i~lPpLreR~~Di~~l~----~~~l~~~~~~~~~--~~~~~~~~a~~~L~~~~w-------pGNvreL~n~i~ 355 (368)
T 3dzd_A 289 YRLSVFQIYLPPLRERGKDVILLA----EYFLKKFAKEYKK--NCFELSEETKEYLMKQEW-------KGNVRELKNLIE 355 (368)
T ss_dssp HHHTSEEEECCCGGGSTTHHHHHH----HHHHHHHHHHTTC--CCCCBCHHHHHHHHTCCC-------TTHHHHHHHHHH
T ss_pred HHhCCeEEeCCChhhchhhHHHHH----HHHHHHHHHHcCC--CCCCcCHHHHHHHHhCCC-------CcHHHHHHHHHH
Confidence 999875 78999998 7888887 3455555443321 235799999999986655 467899999999
Q ss_pred HHHH
Q psy2406 425 KLLE 428 (464)
Q Consensus 425 ~~l~ 428 (464)
+.+.
T Consensus 356 ~~~~ 359 (368)
T 3dzd_A 356 RAVI 359 (368)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 79
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.32 E-value=9.6e-13 Score=142.61 Aligned_cols=157 Identities=15% Similarity=0.247 Sum_probs=94.9
Q ss_pred hhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeee-----------eecCceeEeeccCCccc
Q psy2406 268 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-----------IIKTDHILFIASGAFHL 336 (464)
Q Consensus 268 ~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~-----------~i~Tsnil~I~ag~f~~ 336 (464)
..+ .++++||||||.+.+. +|+.||++|+.+.+..... .-...++.+|++++...
T Consensus 198 ~~a-~~gvL~LDEi~~l~~~-------------~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~ 263 (604)
T 3k1j_A 198 HRA-HKGVLFIDEIATLSLK-------------MQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDT 263 (604)
T ss_dssp HHT-TTSEEEETTGGGSCHH-------------HHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHH
T ss_pred eec-CCCEEEEechhhCCHH-------------HHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHH
Confidence 445 6889999999998643 7889999998665542110 00123556788874210
Q ss_pred cCCCCCchhhhccCC---eEEEcCCC---CHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccC
Q psy2406 337 AKPSDLIPELQGRFP---IRVELDSL---SISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINER 410 (464)
Q Consensus 337 ~~p~~f~PEfl~R~d---~iV~f~~L---t~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~ 410 (464)
...|+|+|++||+ ..+.|+++ +.+.+..++ +.+.+.+...+....++++|+..|++.+......
T Consensus 264 --~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l--------~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~ 333 (604)
T 3k1j_A 264 --VDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLV--------QFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGR 333 (604)
T ss_dssp --HHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHH--------HHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCS
T ss_pred --HhhcCHHHHHHhhccceEeeccccccCCHHHHHHHH--------HHHHHHHhhccCcccCCHHHHHHHHHHHhhhhcc
Confidence 1359999999997 56777654 444455444 2233333333445689999999999988643000
Q ss_pred CC--ccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHhC
Q psy2406 411 TE--NIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLG 451 (464)
Q Consensus 411 ~~--~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~~ 451 (464)
.. ..-.|.|.++++.... . ..... .-.|+.++|..+..
T Consensus 334 r~~l~~~~R~l~~llr~A~~-~-A~~~~-~~~I~~edv~~A~~ 373 (604)
T 3k1j_A 334 KGHLTLRLRDLGGIVRAAGD-I-AVKKG-KKYVEREDVIEAVK 373 (604)
T ss_dssp TTEEECCHHHHHHHHHHHHH-H-HHHTT-CSSBCHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHH-H-HHhcC-cccccHHHHHHHHH
Confidence 00 0136778887775422 1 11221 23578888877753
No 80
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.31 E-value=4.9e-13 Score=118.48 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=32.0
Q ss_pred cceEEEecCCCchHHHHHHHHHHh---CCCeEEeecCcee
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEATKFT 108 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s~~~ 108 (464)
.++||+||||||||++|+++++.. +.||+ ++|+.+.
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~ 63 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPD 63 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCC
Confidence 569999999999999999999987 78999 9997653
No 81
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.31 E-value=4.8e-13 Score=118.40 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=31.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCce
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKF 107 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~ 107 (464)
.++||+||||||||++|+++++..+ ||+.++|+.+
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~ 62 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEY 62 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTH
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhC
Confidence 5699999999999999999999988 9999988654
No 82
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.30 E-value=4e-12 Score=140.88 Aligned_cols=93 Identities=20% Similarity=0.341 Sum_probs=60.4
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCC----CCchhhh
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS----DLIPELQ 347 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~----~f~PEfl 347 (464)
.++||||| .. . ..++.|++.|+.+ ++.+|++++. ..+ .++|+|.
T Consensus 267 ~~~iLfiD----~~--------~-----~~~~~L~~~l~~~------------~v~~I~at~~---~~~~~~~~~d~al~ 314 (758)
T 3pxi_A 267 GNIILFID----AA--------I-----DASNILKPSLARG------------ELQCIGATTL---DEYRKYIEKDAALE 314 (758)
T ss_dssp CCCEEEEC----C---------------------CCCTTSS------------SCEEEEECCT---TTTHHHHTTCSHHH
T ss_pred CCEEEEEc----Cc--------h-----hHHHHHHHHHhcC------------CEEEEeCCCh---HHHHHHhhccHHHH
Confidence 57899999 11 1 1456889988743 3467777641 221 5789999
Q ss_pred ccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhc
Q psy2406 348 GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 406 (464)
Q Consensus 348 ~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~ 406 (464)
+||. .|.|++|+.+++.+|+.. +...+ ...++ +.++++++..+++.+..
T Consensus 315 rRf~-~i~v~~p~~~~~~~il~~----~~~~~---~~~~~--~~i~~~al~~~~~~s~~ 363 (758)
T 3pxi_A 315 RRFQ-PIQVDQPSVDESIQILQG----LRDRY---EAHHR--VSITDDAIEAAVKLSDR 363 (758)
T ss_dssp HSEE-EEECCCCCHHHHHHHHHH----TTTTS---GGGSS--CSCCHHHHHHHHHHHHH
T ss_pred hhCc-EEEeCCCCHHHHHHHHHH----HHHHH---HHhcC--CCCCHHHHHHHHHHhhc
Confidence 9995 589999999999999852 22211 12234 46889999999887754
No 83
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.30 E-value=1.2e-12 Score=116.94 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=44.5
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccc-cCCCCCchhhhccC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL-AKPSDLIPELQGRF 350 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~-~~p~~f~PEfl~R~ 350 (464)
.+.||||||+|.+.+.+.... ....+++.|+++++. .++.+|++++... .....+.|.|++||
T Consensus 115 ~~~vl~iDe~~~l~~~~~~~~----~~~~~~~~l~~~~~~------------~~~~ii~~~~~~~~~~~~~~~~~l~~R~ 178 (187)
T 2p65_A 115 GQVVMFIDEIHTVVGAGAVAE----GALDAGNILKPMLAR------------GELRCIGATTVSEYRQFIEKDKALERRF 178 (187)
T ss_dssp TSEEEEETTGGGGSSSSSSCT----TSCCTHHHHHHHHHT------------TCSCEEEEECHHHHHHHTTTCHHHHHHE
T ss_pred CceEEEEeCHHHhcccccccc----cchHHHHHHHHHHhc------------CCeeEEEecCHHHHHHHHhccHHHHHhc
Confidence 568999999999975533100 011245566666654 2456677653111 00135789999999
Q ss_pred CeEEEcCCCC
Q psy2406 351 PIRVELDSLS 360 (464)
Q Consensus 351 d~iV~f~~Lt 360 (464)
+. |.+.+++
T Consensus 179 ~~-i~i~~p~ 187 (187)
T 2p65_A 179 QQ-ILVEQPS 187 (187)
T ss_dssp EE-EECCSCC
T ss_pred Cc-ccCCCCC
Confidence 86 7888775
No 84
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.18 E-value=4.7e-11 Score=119.38 Aligned_cols=68 Identities=10% Similarity=0.260 Sum_probs=54.9
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccccCCCCCchhhhccCC
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 351 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~~f~PEfl~R~d 351 (464)
.+.||+|||+|.+... .++.||+.||.. ..+++||+++ ++|..+.|++++|
T Consensus 82 ~~kvviIdead~lt~~-------------a~naLLk~LEep----------~~~t~fIl~t----~~~~kl~~tI~SR-- 132 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQ-------------AANAFLKALEEP----------PEYAVIVLNT----RRWHYLLPTIKSR-- 132 (305)
T ss_dssp SSEEEEETTGGGBCHH-------------HHHHTHHHHHSC----------CTTEEEEEEE----SCGGGSCHHHHTT--
T ss_pred CceEEEeccHHHhCHH-------------HHHHHHHHHhCC----------CCCeEEEEEE----CChHhChHHHHce--
Confidence 4679999999999743 578999999852 3455666665 3577899999999
Q ss_pred eEEEcCCCCHHHHHHHHH
Q psy2406 352 IRVELDSLSISDFTRIMT 369 (464)
Q Consensus 352 ~iV~f~~Lt~~el~~Il~ 369 (464)
++.|++|+.+++.+.+.
T Consensus 133 -~~~f~~l~~~~i~~~L~ 149 (305)
T 2gno_A 133 -VFRVVVNVPKEFRDLVK 149 (305)
T ss_dssp -SEEEECCCCHHHHHHHH
T ss_pred -eEeCCCCCHHHHHHHHH
Confidence 68999999999999885
No 85
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.09 E-value=6.5e-10 Score=112.18 Aligned_cols=142 Identities=13% Similarity=0.126 Sum_probs=83.1
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecC--ceeEeeccCCccccCCC---CCc---
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKT--DHILFIASGAFHLAKPS---DLI--- 343 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~T--snil~I~ag~f~~~~p~---~f~--- 343 (464)
.+.||+|||+|.+...... .......|+..++... ... +++.+|++++ .+. .+.
T Consensus 138 ~~~llvlDe~~~l~~~~~~-------~~~~l~~l~~~~~~~~-------~~~~~~~v~lI~~~~----~~~~~~~l~~~~ 199 (412)
T 1w5s_A 138 HYLLVILDEFQSMLSSPRI-------AAEDLYTLLRVHEEIP-------SRDGVNRIGFLLVAS----DVRALSYMREKI 199 (412)
T ss_dssp CEEEEEEESTHHHHSCTTS-------CHHHHHHHHTHHHHSC-------CTTSCCBEEEEEEEE----ETHHHHHHHHHC
T ss_pred CeEEEEEeCHHHHhhccCc-------chHHHHHHHHHHHhcc-------cCCCCceEEEEEEec----cccHHHHHhhhc
Confidence 5789999999998643110 1123334555543210 012 5666776652 121 233
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCc---cChhHHH
Q psy2406 344 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTEN---IGARRLY 420 (464)
Q Consensus 344 PEfl~R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~---~GAR~L~ 420 (464)
|.+.+|+...+.|.||+.+++.+++.. .+. .. +....++++++..|++.+... . +..|.+.
T Consensus 200 ~~~~~~~~~~i~l~~l~~~e~~~ll~~----~~~---~~----~~~~~~~~~~~~~i~~~~~~~-----~~~~G~p~~~~ 263 (412)
T 1w5s_A 200 PQVESQIGFKLHLPAYKSRELYTILEQ----RAE---LG----LRDTVWEPRHLELISDVYGED-----KGGDGSARRAI 263 (412)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHH----HHH---HH----BCTTSCCHHHHHHHHHHHCGG-----GTSCCCHHHHH
T ss_pred chhhhhcCCeeeeCCCCHHHHHHHHHH----HHH---hc----CCCCCCChHHHHHHHHHHHHh-----ccCCCcHHHHH
Confidence 667788887799999999999999842 111 11 112357899999999888421 2 5678788
Q ss_pred HHHHHHHHHHhcccCCCceeecHHHHHhHh
Q psy2406 421 TAMEKLLEEVSFNSNNISLLVDADYVNSRL 450 (464)
Q Consensus 421 r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~ 450 (464)
.++...+..... . ..-.|+.+++....
T Consensus 264 ~l~~~a~~~a~~--~-~~~~i~~~~v~~~~ 290 (412)
T 1w5s_A 264 VALKMACEMAEA--M-GRDSLSEDLVRKAV 290 (412)
T ss_dssp HHHHHHHHHHHH--T-TCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHH--c-CCCCCCHHHHHHHH
Confidence 877765432211 1 11246666665544
No 86
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.93 E-value=2.1e-09 Score=113.70 Aligned_cols=162 Identities=16% Similarity=0.102 Sum_probs=93.9
Q ss_pred hhccCCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccc-c------CCC
Q psy2406 268 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL-A------KPS 340 (464)
Q Consensus 268 ~~a~~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~-~------~p~ 340 (464)
..| ..+|+|+|||+++.++ .|..||+.|+.++++.. |.-...+..+|+|++-.. - ...
T Consensus 297 ~LA-dgGvl~lDEIn~~~~~-------------~qsaLlEaMEe~~VtI~-G~~lparf~VIAA~NP~~~yd~~~s~~~~ 361 (506)
T 3f8t_A 297 VLA-DGGILAVDHLEGAPEP-------------HRWALMEAMDKGTVTVD-GIALNARCAVLAAINPGEQWPSDPPIARI 361 (506)
T ss_dssp HHT-TTSEEEEECCTTCCHH-------------HHHHHHHHHHHSEEEET-TEEEECCCEEEEEECCCC--CCSCGGGGC
T ss_pred EEc-CCCeeehHhhhhCCHH-------------HHHHHHHHHhCCcEEEC-CEEcCCCeEEEEEeCcccccCCCCCcccc
Confidence 445 6899999999999754 77899999997777654 332234446677754211 0 001
Q ss_pred CCchhhhccCCeEEEcCCCCHHHH-----HHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhcc-cc-----
Q psy2406 341 DLIPELQGRFPIRVELDSLSISDF-----TRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI-NE----- 409 (464)
Q Consensus 341 ~f~PEfl~R~d~iV~f~~Lt~~el-----~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~-~~----- 409 (464)
.+++++++|||.++.+......+. ..++. ...++++....+...+...+++++.++|++..... +.
T Consensus 362 ~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls---~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~ 438 (506)
T 3f8t_A 362 DLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPS---YTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERL 438 (506)
T ss_dssp CSCHHHHTTCSEEEETTC--------------CC---HHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHhhheeeEEEecCCCChhHhhcccCCCCC---HHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCccccc
Confidence 688999999998776544332221 11221 23444555544434567799999999998764321 00
Q ss_pred ----CCCccChhHHHHHHHHHHHHHhcccCCCceeecHHHHHhHh
Q psy2406 410 ----RTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRL 450 (464)
Q Consensus 410 ----~~~~~GAR~L~r~IE~~l~~~l~~~~~~~v~I~~e~v~~~~ 450 (464)
..-...+|.+..++.- ......+... -.|+.++|+.++
T Consensus 439 ~~~~~~~giSpR~leaLiRl--A~A~A~L~gR-~~V~~eDV~~Ai 480 (506)
T 3f8t_A 439 GMGLPTLPVTRRQLESVERL--AKAHARMRLS-DDVEPEDVDIAA 480 (506)
T ss_dssp HTTCCCCCCCHHHHHHHHHH--HHHHHHHTTC-SEECHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHH--HHHHHHHcCc-CCCCHHHHHHHH
Confidence 1113456877777642 1222222322 367888887653
No 87
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.90 E-value=2.2e-09 Score=132.48 Aligned_cols=146 Identities=13% Similarity=0.032 Sum_probs=82.3
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCcee-eeee-eeecCceeEeeccCCccc-cCCCCCchhhhc
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTV-NTKY-GIIKTDHILFIASGAFHL-AKPSDLIPELQG 348 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v-~~~~-~~i~Tsnil~I~ag~f~~-~~p~~f~PEfl~ 348 (464)
..+|||||||+....++.+ .+ .+...|-|+||.+.+ +.+. ..+...++.+|+|++... .....++|.|++
T Consensus 1336 k~~VlFiDEinmp~~d~yg---~q----~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR 1408 (2695)
T 4akg_A 1336 KNLVLFCDEINLPKLDKYG---SQ----NVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR 1408 (2695)
T ss_dssp SCEEEEEETTTCSCCCSSS---CC----HHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT
T ss_pred ceEEEEecccccccccccC---ch----hHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh
Confidence 4679999999976555432 11 255677788874332 2221 222336788898864211 112469999999
Q ss_pred cCCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHH-hhcCceeEeCH---HHHHHHHHHhhccccCCCccChhHHHHHHH
Q psy2406 349 RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALL-ATEGIKIEFVD---DGIQRLAEIAYCINERTENIGARRLYTAME 424 (464)
Q Consensus 349 R~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll-~~~gi~L~~sd---eAl~~LA~~a~~~~~~~~~~GAR~L~r~IE 424 (464)
|| .++.++.++.+++.+|+.. .+...-+.. .-.++.-.+.. ++...+.+.---+...+..+.-|.|.++++
T Consensus 1409 rf-~vi~i~~P~~~~l~~I~~~----il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~q 1483 (2695)
T 4akg_A 1409 HA-AILYLGYPSGKSLSQIYEI----YYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVR 1483 (2695)
T ss_dssp TE-EEEECCCCTTTHHHHHHHH----HHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHH
T ss_pred ee-eEEEeCCCCHHHHHHHHHH----HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHH
Confidence 99 6689999999999999953 222110000 00000000111 112222222111223345788999999999
Q ss_pred HHHHH
Q psy2406 425 KLLEE 429 (464)
Q Consensus 425 ~~l~~ 429 (464)
.++..
T Consensus 1484 Gll~~ 1488 (2695)
T 4akg_A 1484 GVYTA 1488 (2695)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88764
No 88
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.69 E-value=2.7e-07 Score=92.09 Aligned_cols=131 Identities=16% Similarity=0.132 Sum_probs=90.8
Q ss_pred CCcEEEEecccc-ccCcCCCCCCCCcchhhHHHhhhccccCceeeeeeeeecCceeEeeccCCccc-cCCCCCchhhhcc
Q psy2406 272 QNGIIFLDEIDK-ITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL-AKPSDLIPELQGR 349 (464)
Q Consensus 272 ~~sVIfIDEIDK-~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~~~~i~Tsnil~I~ag~f~~-~~p~~f~PEfl~R 349 (464)
++-||+|||+|. +... .++.|++.++.. ..+.+++++++.... .....+.+.+.+|
T Consensus 76 ~~kvvii~~~~~kl~~~-------------~~~aLl~~le~p---------~~~~~~il~~~~~~~~~~~~k~~~~i~sr 133 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAA-------------INEQLLTLTGLL---------HDDLLLIVRGNKLSKAQENAAWFTALANR 133 (343)
T ss_dssp SCEEEEEECCSSCCCTT-------------HHHHHHHHHTTC---------BTTEEEEEEESCCCTTTTTSHHHHHHTTT
T ss_pred CCeEEEEECCCCCCChH-------------HHHHHHHHHhcC---------CCCeEEEEEcCCCChhhHhhHHHHHHHhC
Confidence 467999999998 6533 567899999852 122333344432111 1123467889999
Q ss_pred CCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHH
Q psy2406 350 FPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 429 (464)
Q Consensus 350 ~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~ 429 (464)
+ .++.|.+++.+++.+.+. +.+..+|+ .++++++++|++.+ +++.|.+.+.++++..-
T Consensus 134 ~-~~~~~~~l~~~~l~~~l~-----------~~~~~~g~--~i~~~a~~~l~~~~--------~gdl~~~~~elekl~l~ 191 (343)
T 1jr3_D 134 S-VQVTCQTPEQAQLPRWVA-----------ARAKQLNL--ELDDAANQVLCYCY--------EGNLLALAQALERLSLL 191 (343)
T ss_dssp C-EEEEECCCCTTHHHHHHH-----------HHHHHTTC--EECHHHHHHHHHSS--------TTCHHHHHHHHHHHHHH
T ss_pred c-eEEEeeCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHh--------chHHHHHHHHHHHHHHh
Confidence 9 568999999999888773 33445565 78999999999877 57899999999987542
Q ss_pred HhcccCCCceeecHHHHHhHhCC
Q psy2406 430 VSFNSNNISLLVDADYVNSRLGD 452 (464)
Q Consensus 430 ~l~~~~~~~v~I~~e~v~~~~~~ 452 (464)
. ++. .||.++|++.++.
T Consensus 192 ---~-~~~--~It~e~V~~~~~~ 208 (343)
T 1jr3_D 192 ---W-PDG--KLTLPRVEQAVND 208 (343)
T ss_dssp ---C-TTC--EECHHHHHHHHHH
T ss_pred ---c-CCC--CCCHHHHHHHHhh
Confidence 1 222 6899988877554
No 89
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.40 E-value=5.5e-06 Score=80.99 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=26.1
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEeecC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIEAT 105 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s 105 (464)
.++++||+|+|||+|++.+++..+ .+.+++.
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~ 63 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNERP--GILIDCR 63 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS--EEEEEHH
T ss_pred eEEEECCCcCCHHHHHHHHHHHcC--cEEEEee
Confidence 499999999999999999999885 5555553
No 90
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.37 E-value=1e-06 Score=110.11 Aligned_cols=142 Identities=23% Similarity=0.217 Sum_probs=82.2
Q ss_pred CcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccccCceeeee-e-eeecCceeEeeccCCccc-cCCCCCchhhhcc
Q psy2406 273 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK-Y-GIIKTDHILFIASGAFHL-AKPSDLIPELQGR 349 (464)
Q Consensus 273 ~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlLEG~~v~~~-~-~~i~Tsnil~I~ag~f~~-~~p~~f~PEfl~R 349 (464)
..|+|||||+....+..+ . ..+...|.|+||.+..-.+ . ..+.-.++.+|+|.+-.. .....++|.|++|
T Consensus 1375 ~~VlFiDDiNmp~~D~yG---t----Q~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~ 1447 (3245)
T 3vkg_A 1375 WLVVFCDEINLPSTDKYG---T----QRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRH 1447 (3245)
T ss_dssp EEEEEETTTTCCCCCTTS---C----CHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTT
T ss_pred eEEEEecccCCCCccccc---c----ccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhh
Confidence 469999999987665443 1 1255678888884333222 1 122336777888753221 2234689999999
Q ss_pred CCeEEEcCCCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHH------hhcc-ccCCCccChhHHHHH
Q psy2406 350 FPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEI------AYCI-NERTENIGARRLYTA 422 (464)
Q Consensus 350 ~d~iV~f~~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~------a~~~-~~~~~~~GAR~L~r~ 422 (464)
|.. +.+..++.+++..|.. .++....+... .+. .+.+...+...+. .+.| ...+..+.-|.|.++
T Consensus 1448 F~v-i~i~~ps~esL~~If~----til~~~l~~~p--~l~-~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv 1519 (3245)
T 3vkg_A 1448 API-LLVDFPSTSSLTQIYG----TFNRALMKLLP--NLR-SFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRW 1519 (3245)
T ss_dssp CCE-EECCCCCHHHHHHHHH----HHHHHHTTSCG--GGT-TSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHH
T ss_pred ceE-EEeCCCCHHHHHHHHH----HHHHHHHhhCh--HHH-HHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHH
Confidence 976 7999999999999974 23222111000 010 1112222222221 1111 223456799999999
Q ss_pred HHHHHHH
Q psy2406 423 MEKLLEE 429 (464)
Q Consensus 423 IE~~l~~ 429 (464)
++.++..
T Consensus 1520 ~qGll~~ 1526 (3245)
T 3vkg_A 1520 DRALLEA 1526 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988764
No 91
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.33 E-value=4e-07 Score=81.37 Aligned_cols=34 Identities=12% Similarity=-0.017 Sum_probs=27.0
Q ss_pred cceEEEecCCCchHHHHHHHHHHh---CCCeEEeecC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEAT 105 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s 105 (464)
..++|+||+|+|||+|+++++..+ |.+.+.+++.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~ 73 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA 73 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence 459999999999999999999987 5445544443
No 92
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.27 E-value=5.1e-06 Score=103.03 Aligned_cols=37 Identities=11% Similarity=-0.025 Sum_probs=34.2
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCcee
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFT 108 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~ 108 (464)
.+.++.||+|||||++++.||+.+|.+++.++|++-.
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~l 682 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSF 682 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSC
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCC
Confidence 5689999999999999999999999999999997654
No 93
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.21 E-value=5.3e-07 Score=81.46 Aligned_cols=24 Identities=25% Similarity=0.063 Sum_probs=22.5
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.+++|+||||||||+|++++|..+
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 569999999999999999999886
No 94
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.18 E-value=2e-05 Score=77.09 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=29.8
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEeecCc
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATK 106 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~ 106 (464)
.++++||+|+|||+|++.+++.++.+++.+++..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 4999999999999999999999887777777654
No 95
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.04 E-value=1.2e-05 Score=79.06 Aligned_cols=25 Identities=24% Similarity=0.139 Sum_probs=22.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
.+++|+||||||||++|++||+.+.
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3699999999999999999999764
No 96
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.03 E-value=2.6e-06 Score=76.83 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=30.6
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
++.|+|+|||||||||+|+.||+.+|++|+..|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~ 38 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDK 38 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChH
Confidence 4579999999999999999999999999987654
No 97
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.96 E-value=5.6e-06 Score=74.02 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=30.4
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
|..|+|+|||||||||+|+.||+.++.+++.++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 4569999999999999999999999999887654
No 98
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.90 E-value=6.2e-06 Score=74.39 Aligned_cols=33 Identities=30% Similarity=0.333 Sum_probs=29.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
..|+|.|+|||||||+|+.||+.+|++++..|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~ 35 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDV 35 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCch
Confidence 459999999999999999999999999886653
No 99
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.90 E-value=1.5e-05 Score=73.41 Aligned_cols=33 Identities=24% Similarity=0.482 Sum_probs=30.3
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
+.|+|+|||||||||+|+.||+.+|.+++..|.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~ 58 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDW 58 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchH
Confidence 569999999999999999999999999987764
No 100
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.89 E-value=4.7e-06 Score=99.54 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=28.4
Q ss_pred CCcc--eEEEecCCCchHHHHHHHHHHh---CCCeEEeec
Q psy2406 70 VILD--MVIKVLLLVGKTEIARRLAKLS---NAPFIKIEA 104 (464)
Q Consensus 70 ~p~~--iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~ 104 (464)
.|++ +|++||||||||+||+++|.+. |.|.+.++.
T Consensus 1079 ~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~ 1118 (1706)
T 3cmw_A 1079 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 1118 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred CCCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEc
Confidence 5666 9999999999999999999776 556555554
No 101
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.82 E-value=8.7e-06 Score=74.49 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=29.1
Q ss_pred CcceEEEecCCCchHHHHHHHHHHh---CCCeEEeecC
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEAT 105 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s 105 (464)
|.+++|+||||||||+||+++|+.+ +.+++.++++
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 3679999999999999999999987 5666666553
No 102
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.82 E-value=8.5e-06 Score=73.12 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=28.3
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
.|+|.|||||||||+|+.||+.++++++..|
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEccc
Confidence 5999999999999999999999999887654
No 103
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.80 E-value=0.00033 Score=88.03 Aligned_cols=36 Identities=14% Similarity=-0.088 Sum_probs=32.9
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCce
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKF 107 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~ 107 (464)
.+..+.||+|||||++++.||+.+|.+++.++|++-
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~ 640 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEG 640 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCC
Confidence 456899999999999999999999999999999764
No 104
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.80 E-value=1.3e-05 Score=70.70 Aligned_cols=32 Identities=22% Similarity=0.170 Sum_probs=29.0
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
.|+|.|||||||||+|+.||+.++++++..|.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~ 34 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSS 34 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCcc
Confidence 48999999999999999999999999886663
No 105
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.78 E-value=1.3e-05 Score=72.28 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=29.2
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
|..|+|.|||||||||+|+.||+.+|.+++..|
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D 37 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLSKD 37 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEecHH
Confidence 456999999999999999999999998887654
No 106
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.77 E-value=1.3e-05 Score=72.22 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=29.5
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
+..|+|+||||||||++|+.||+.++.+++.+|
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 457999999999999999999999998887654
No 107
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.76 E-value=1.4e-05 Score=71.15 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=27.5
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
..|.|+||+||||||+++.||..++.+++..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id~ 35 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 35 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEec
Confidence 5699999999999999999999999876643
No 108
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.76 E-value=1.6e-05 Score=73.00 Aligned_cols=34 Identities=21% Similarity=0.117 Sum_probs=30.1
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
.|..|+|.|||||||||+|+.||+.++.+++.+|
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4567999999999999999999999999887654
No 109
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.75 E-value=1.4e-05 Score=71.17 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=29.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
.+|+|.|++||||||+|+.||+.+|+|++..|
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 46999999999999999999999999998665
No 110
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.74 E-value=1.4e-05 Score=72.80 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=29.2
Q ss_pred CcceEEEecCCCchHHHHHHHHHH-hCCCeEEee
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKL-SNAPFIKIE 103 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~-l~~~~i~ld 103 (464)
+..|+|+|||||||||+++.||+. +|++++.+|
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 356999999999999999999999 788887655
No 111
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.72 E-value=1.5e-05 Score=71.57 Aligned_cols=33 Identities=12% Similarity=-0.020 Sum_probs=28.6
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
|..|+|.|||||||||+|+.||+.+|.+++..|
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 35 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAG 35 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHH
Confidence 456999999999999999999999998776443
No 112
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.70 E-value=1.9e-05 Score=70.09 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=28.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
+.|+|.|+|||||||+|+.||+.+|.+++..|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 45999999999999999999999999887654
No 113
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.70 E-value=2.5e-05 Score=71.72 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=30.3
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
|..|+|.||+|+||||+|+.|++.+|.+++..|.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~ 51 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDA 51 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCc
Confidence 4579999999999999999999999988887654
No 114
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.69 E-value=1.1e-05 Score=71.74 Aligned_cols=30 Identities=17% Similarity=-0.085 Sum_probs=25.1
Q ss_pred CcceEEEecCCCchHHHHHHHHH-HhCCCeE
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAK-LSNAPFI 100 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~-~l~~~~i 100 (464)
|.-|+|.|||||||||+|+.|++ .++.+++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 45699999999999999999999 5665444
No 115
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.68 E-value=2.2e-05 Score=70.40 Aligned_cols=34 Identities=6% Similarity=-0.203 Sum_probs=29.3
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
+|..|+|.|||||||||+|+.||+.+|.+++..|
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 38 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAG 38 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHH
Confidence 4567999999999999999999999998776553
No 116
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.67 E-value=2.2e-05 Score=70.87 Aligned_cols=33 Identities=6% Similarity=-0.082 Sum_probs=28.8
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
|..|+|.|||||||||+|+.||+.+|.+++..|
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 356999999999999999999999998877554
No 117
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.66 E-value=2.3e-05 Score=73.04 Aligned_cols=33 Identities=21% Similarity=0.105 Sum_probs=29.0
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
|..|+|.|||||||||+|+.||+.++.+++.+|
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 36 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATG 36 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEehh
Confidence 456999999999999999999999998877553
No 118
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.65 E-value=2.8e-05 Score=75.00 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=30.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEeecC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIEAT 105 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s 105 (464)
.++++|||||||||||+.||+.++.+++..|..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 489999999999999999999999999988864
No 119
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.64 E-value=2.5e-05 Score=70.69 Aligned_cols=33 Identities=12% Similarity=-0.065 Sum_probs=28.6
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
|..|+|.|||||||||+|+.||+.+|.+++.+|
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 44 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTG 44 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 456999999999999999999999997776543
No 120
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.63 E-value=1.8e-05 Score=71.13 Aligned_cols=31 Identities=19% Similarity=0.030 Sum_probs=27.3
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
..|+|.|||||||||+|+.||+.+|.+++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 4599999999999999999999998776643
No 121
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.62 E-value=2.5e-05 Score=68.30 Aligned_cols=29 Identities=31% Similarity=0.316 Sum_probs=26.2
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
-|+|.|||||||||+|+.| +.+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4899999999999999999 9999887754
No 122
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.62 E-value=8.8e-05 Score=69.82 Aligned_cols=28 Identities=32% Similarity=0.153 Sum_probs=25.9
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeE
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFI 100 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i 100 (464)
.|+|+||||+||+|.|+.||+.+|.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 4899999999999999999999998766
No 123
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.61 E-value=3.1e-05 Score=68.43 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=28.9
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
.|+|.|+|||||||+|+.|++.++.+++..|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~ 33 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDE 33 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECcH
Confidence 48999999999999999999999999886653
No 124
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.60 E-value=8.1e-05 Score=70.88 Aligned_cols=31 Identities=10% Similarity=-0.079 Sum_probs=27.4
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeE
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFI 100 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i 100 (464)
.|+-|+|+||||+||+|.|+.||+.+|.+.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 4567889999999999999999999987765
No 125
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.59 E-value=3e-05 Score=72.63 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=29.0
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
|..|+|.|||||||||+|+.||+.+|.+++.+|
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 39 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSSG 39 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEech
Confidence 456999999999999999999999998877553
No 126
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.59 E-value=2.4e-05 Score=72.93 Aligned_cols=33 Identities=15% Similarity=0.045 Sum_probs=28.1
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
.|..|+|.|||||||||+|+.||+.++.+++.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 346699999999999999999999998766543
No 127
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.59 E-value=3.3e-05 Score=70.66 Aligned_cols=34 Identities=12% Similarity=-0.040 Sum_probs=29.4
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
.|..|+|.|||||||||+|+.||+.+|.+++..|
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 4466999999999999999999999998777554
No 128
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=97.58 E-value=0.00021 Score=59.71 Aligned_cols=87 Identities=15% Similarity=0.067 Sum_probs=70.3
Q ss_pred CCCHHHHHHHHHhhHHHHHHHHHHHHhhcCceeEeCHHHHHHHHHHhhccccCCCccChhHHHHHHHHHHHHHhcccCC-
Q psy2406 358 SLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNN- 436 (464)
Q Consensus 358 ~Lt~~el~~Il~~~~~~ll~~~~~ll~~~gi~L~~sdeAl~~LA~~a~~~~~~~~~~GAR~L~r~IE~~l~~~l~~~~~- 436 (464)
.+|.+|-..|.+ +.++.+..+......-.+.++++|+..|++.... ..|.|.|.+.|.+++...+.....
T Consensus 2 GYt~~EK~~IAk---~~LiPkql~~~GL~~~~~~i~d~al~~iI~~YTR------EaGVRnLer~i~~i~RK~a~~i~~~ 72 (94)
T 1qzm_A 2 GYTEDEKLNIAK---RHLLPKQIERNALKKGELTVDDSAIIGIIRYYTR------EAGVRGLEREISKLCRKAVKQLLLD 72 (94)
T ss_dssp CCCHHHHHHHHH---HTHHHHHHHHTTCCTTTEEECHHHHHHHHHHHCC------CSSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHH---HhccHHHHHHhCCChhhceECHHHHHHHHHHhcc------cccchHHHHHHHHHHHHHHHHHHHc
Confidence 578899999997 5677766665555556799999999999988765 689999999999998887766542
Q ss_pred ---CceeecHHHHHhHhCCC
Q psy2406 437 ---ISLLVDADYVNSRLGDL 453 (464)
Q Consensus 437 ---~~v~I~~e~v~~~~~~~ 453 (464)
..+.||.+.|+++++.-
T Consensus 73 ~~~~~v~v~~~~l~~~LG~~ 92 (94)
T 1qzm_A 73 KSLKHIEINGDNLHDYLGVQ 92 (94)
T ss_dssp TTCCCEEECTTTTHHHHCSC
T ss_pred CCCCCeeECHHHHHHHcCCC
Confidence 23899999999998863
No 129
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.56 E-value=2.9e-05 Score=69.61 Aligned_cols=25 Identities=16% Similarity=0.001 Sum_probs=23.3
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
..|+|.|||||||||+|+.||+.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4599999999999999999999987
No 130
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.56 E-value=3.9e-05 Score=70.96 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=27.7
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
.|+|.|||||||||+|+.||+.+|++++.+|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHH
Confidence 4899999999999999999999998877553
No 131
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.55 E-value=4.1e-05 Score=71.44 Aligned_cols=32 Identities=9% Similarity=0.012 Sum_probs=28.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
..|+|.|||||||||+|+.||+.+|.+++.+|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 37 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLSTG 37 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEehh
Confidence 46999999999999999999999998887653
No 132
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.55 E-value=4.2e-05 Score=70.66 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=27.8
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
.|+|.|||||||||+|+.||+.+|.+++.+|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHH
Confidence 4899999999999999999999998887553
No 133
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.54 E-value=3.9e-05 Score=72.35 Aligned_cols=33 Identities=21% Similarity=-0.017 Sum_probs=29.1
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
.+..|+|.|||||||||+|+.||+.++++++.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 346799999999999999999999999887754
No 134
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.52 E-value=4.4e-05 Score=77.04 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=33.9
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCce
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKF 107 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~ 107 (464)
+|+.|+++||||||||+||+.||+.++++++.+|...+
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qv 41 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSALI 41 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhh
Confidence 34579999999999999999999999999999987654
No 135
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.52 E-value=4.2e-05 Score=68.44 Aligned_cols=30 Identities=27% Similarity=0.194 Sum_probs=23.6
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeE
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFI 100 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i 100 (464)
|..|+|.|+|||||||+|+.||+.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456999999999999999999999999877
No 136
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.50 E-value=5e-05 Score=68.50 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=30.9
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCce
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKF 107 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~ 107 (464)
..+.|+||||+||||+++.||..++.+.+.++...+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 458999999999999999999998888887776544
No 137
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.48 E-value=4.9e-05 Score=72.62 Aligned_cols=34 Identities=12% Similarity=-0.154 Sum_probs=29.4
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
.|..|+|.|||||||||+|+.|++.+|.+++.++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 3467999999999999999999999988777553
No 138
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.47 E-value=6.5e-05 Score=69.73 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=27.9
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
.|+|.|||||||||+|+.||+.+|.+++.+|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d 32 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTG 32 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHH
Confidence 4899999999999999999999998887653
No 139
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.47 E-value=6.6e-05 Score=66.99 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=28.0
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
..++|+||+|+||||+++.|+..+|.+++..|
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d 40 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLDGD 40 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEEGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCc
Confidence 45899999999999999999999988776554
No 140
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.46 E-value=4.5e-05 Score=77.50 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=32.9
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCce
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKF 107 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~ 107 (464)
+.|+++||||||||+||+.||+.++.++|..|.-.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qv 76 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQV 76 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccccc
Confidence 469999999999999999999999999999988654
No 141
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.45 E-value=0.00017 Score=72.89 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=25.0
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCC--CeEEe
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNA--PFIKI 102 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~--~~i~l 102 (464)
..++++||||||||+||.++|...|. .|+.+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 34799999999999999999987543 46655
No 142
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.43 E-value=6.2e-05 Score=72.16 Aligned_cols=38 Identities=21% Similarity=0.201 Sum_probs=32.5
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCce
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKF 107 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~ 107 (464)
.|..++|.|||||||||+|+.|++.++.+++.+|+..+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 45679999999999999999999999877777777655
No 143
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.41 E-value=7.3e-05 Score=75.23 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=34.0
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCce
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKF 107 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~ 107 (464)
.|+-+++.||||||||+||..||+.++.+++..|.-.+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 45568999999999999999999999999999988665
No 144
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.41 E-value=7.3e-05 Score=69.29 Aligned_cols=31 Identities=13% Similarity=0.071 Sum_probs=27.5
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
..|.|.||+||||||+++.|++.+|++++..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~ 36 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDS 36 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 4599999999999999999999999877643
No 145
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.39 E-value=9.4e-05 Score=67.36 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=28.0
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
.|.+.||+||||||+|+.||+.+|++++..|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5899999999999999999999998888554
No 146
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.38 E-value=9.2e-05 Score=67.14 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=28.5
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
.|..|.+.||+||||||+|+.||+. |++++..|
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 3466999999999999999999998 88887554
No 147
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.38 E-value=6.5e-05 Score=74.69 Aligned_cols=34 Identities=9% Similarity=0.003 Sum_probs=27.7
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhC----CCeEEeec
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSN----APFIKIEA 104 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~----~~~i~ld~ 104 (464)
+.+++|+||||||||+||+++|+.+. .+++.+++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 36799999999999999999998654 56665554
No 148
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.37 E-value=0.00029 Score=66.02 Aligned_cols=25 Identities=16% Similarity=-0.129 Sum_probs=20.9
Q ss_pred CCcceEEEecCCCchHHHHHHHHHH
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
++.-.|++||||+|||++|.+++..
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4567899999999999999887544
No 149
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.37 E-value=0.00011 Score=67.64 Aligned_cols=31 Identities=26% Similarity=0.247 Sum_probs=26.9
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
..+.|.||+||||||+++.|+..+|..++..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~ 60 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEFAEA 60 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEEG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEEcc
Confidence 5699999999999999999999998766543
No 150
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.35 E-value=0.00014 Score=65.41 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=31.5
Q ss_pred cceEEEecCCCchHHHHHHHHHHh---CCCeEEeecCce
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEATKF 107 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s~~ 107 (464)
..+.|.|++||||||+++.|++.+ |.|++.+|+..+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 458999999999999999999998 999998886443
No 151
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.35 E-value=0.00014 Score=65.20 Aligned_cols=32 Identities=16% Similarity=0.005 Sum_probs=29.0
Q ss_pred ceEEEecCCCchHHHHHHHHHHh---CCCeEEeec
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEA 104 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~ 104 (464)
.|.|.|++||||||+|+.|++.+ |.+++.++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 38899999999999999999998 999988764
No 152
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.34 E-value=9.8e-05 Score=67.53 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=27.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
.|.+.||+||||||+++.||+ +|++++..|.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~ 33 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDADK 33 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEccH
Confidence 489999999999999999999 8988876653
No 153
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.34 E-value=0.00022 Score=69.09 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=30.0
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
..|.|.||+||||||+++.||+.+|.+|+..|.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~ 81 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDT 81 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcH
Confidence 459999999999999999999999999887664
No 154
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.32 E-value=0.00014 Score=71.55 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=28.9
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
.|.-++|.|||||||||+|+.|++.++..++.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 34669999999999999999999998555566665
No 155
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.32 E-value=0.0001 Score=67.58 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=26.8
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
.|.|.||+||||||+++.||+ +|.+++..|
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~d 33 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDAD 33 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccchH
Confidence 588999999999999999998 898887654
No 156
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.29 E-value=8e-05 Score=66.65 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=22.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
.|+|.|||||||||+|+.|++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999886
No 157
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.28 E-value=0.00012 Score=68.73 Aligned_cols=30 Identities=13% Similarity=-0.001 Sum_probs=26.7
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
.|+|.|||||||||+|+.||+.+|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 489999999999999999999998776654
No 158
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.25 E-value=0.00011 Score=70.07 Aligned_cols=29 Identities=14% Similarity=0.051 Sum_probs=25.2
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeE
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFI 100 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i 100 (464)
.++||+||||||||++|.+||+.+...++
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 46999999999999999999999865443
No 159
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.24 E-value=0.00016 Score=65.31 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=25.7
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeE
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFI 100 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i 100 (464)
.|.|.||+||||||+++.||+.++.+++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 4899999999999999999999998765
No 160
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.24 E-value=0.00041 Score=64.46 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=28.5
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
..|.|.|++||||||+|+.|++.+|++++..|
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 45899999999999999999999999888654
No 161
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.24 E-value=0.00022 Score=68.73 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=29.9
Q ss_pred cceEEEecCCCchHHHHHHHHHH---hCCCeEEeecCc
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL---SNAPFIKIEATK 106 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~---l~~~~i~ld~s~ 106 (464)
.-|+|.|+|||||||+|+.|++. .|.+++.++...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~ 42 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL 42 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchH
Confidence 46999999999999999999998 788888665533
No 162
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.23 E-value=0.00016 Score=65.66 Aligned_cols=34 Identities=15% Similarity=-0.012 Sum_probs=29.3
Q ss_pred CcceEEEecCCCchHHHHHHHHHHh-CCCeEEeec
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLS-NAPFIKIEA 104 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l-~~~~i~ld~ 104 (464)
+..|.|.||+||||||+++.||+.+ |.+++.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 3569999999999999999999998 688887653
No 163
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.22 E-value=9.9e-05 Score=67.52 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=28.3
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
|.-|+|.|+|||||||+|+.||+.++.+.+.++
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~ 42 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK 42 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 456999999999999999999999887765554
No 164
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.22 E-value=0.00017 Score=68.49 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=27.1
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeEE
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFIK 101 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ 101 (464)
|..++|+||+||||||+++.||+.+|...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4569999999999999999999999876553
No 165
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.18 E-value=0.00016 Score=72.89 Aligned_cols=36 Identities=28% Similarity=0.160 Sum_probs=32.2
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCce
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKF 107 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~ 107 (464)
+-|++.||||||||+||..||+.++.+++..|.-.+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~Qv 39 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQV 39 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccc
Confidence 448899999999999999999999999998887654
No 166
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.16 E-value=0.00021 Score=66.08 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=28.8
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
|..|.+.||+|||||++++.||+.+|.+++..|
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 346999999999999999999999998877543
No 167
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.14 E-value=0.00014 Score=70.68 Aligned_cols=33 Identities=15% Similarity=-0.052 Sum_probs=27.6
Q ss_pred CcceEEEecCCCchHHHHHHHHHHh-CCCeEEee
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLS-NAPFIKIE 103 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l-~~~~i~ld 103 (464)
|.-|++.|||||||||+|+.|++.+ +.+++..|
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D 35 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc
Confidence 4569999999999999999999974 76666555
No 168
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.14 E-value=0.00036 Score=63.42 Aligned_cols=27 Identities=15% Similarity=0.040 Sum_probs=24.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAP 98 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~ 98 (464)
.-|+|.|||||||||+|+.||+.++.+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 459999999999999999999998874
No 169
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.13 E-value=0.00022 Score=68.68 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=27.9
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
|..+.+.|||||||||+|+.||+.+|.+++..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 45699999999999999999999999776543
No 170
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.12 E-value=0.00021 Score=66.16 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=27.9
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
|..|.|.|++||||||+++.||+ +|.+++..|
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 34599999999999999999999 898887665
No 171
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.11 E-value=0.00026 Score=66.77 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=28.7
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
.+..|.|.||+|||||++++.||+.+|++++..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 345699999999999999999999999887644
No 172
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.11 E-value=0.00035 Score=62.96 Aligned_cols=31 Identities=16% Similarity=0.089 Sum_probs=27.2
Q ss_pred eEEEecCCCchHHHHHHHHHHh---CCCeEEeec
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLS---NAPFIKIEA 104 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~ 104 (464)
|.|.||+||||||+++.|++.+ |.+++.+..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 7899999999999999999999 999886654
No 173
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.10 E-value=0.00016 Score=66.18 Aligned_cols=32 Identities=19% Similarity=0.084 Sum_probs=26.6
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
|..|+|.||+||||||+|+.||+.++.+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 45699999999999999999999886554443
No 174
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.07 E-value=0.00038 Score=63.87 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=27.5
Q ss_pred cceEEEecCCCchHHHHHHHHHHh---CCCeEEeecCc
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEATK 106 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s~ 106 (464)
..+.|.||+||||||+++.||..+ |...+.+|...
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 458999999999999999999998 54434555433
No 175
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.04 E-value=0.00029 Score=71.54 Aligned_cols=34 Identities=29% Similarity=0.247 Sum_probs=30.9
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEAT 105 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s 105 (464)
.-|++.||||||||+||+.||+.++++++..|.-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 4589999999999999999999999888888865
No 176
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.00 E-value=0.00037 Score=66.51 Aligned_cols=29 Identities=10% Similarity=0.088 Sum_probs=26.3
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCC
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAP 98 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~ 98 (464)
.|..|.+.||+||||||+|+.||+.+|.+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 34569999999999999999999999987
No 177
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.99 E-value=0.001 Score=80.79 Aligned_cols=35 Identities=17% Similarity=-0.005 Sum_probs=27.8
Q ss_pred CcceEEEecCCCchHHHHHHHHHHh---CCCeEEeecC
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEAT 105 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s 105 (464)
+.+++|+||||||||+||.++|.+. |.....+++.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1464 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 4789999999999999999998775 4555555543
No 178
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.95 E-value=0.00041 Score=72.07 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=31.3
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCce
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKF 107 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~ 107 (464)
+-|++.||||||||+||+.||+.++..++..|.-.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~Qv 38 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQV 38 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccce
Confidence 348899999999999999999999999888876433
No 179
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.94 E-value=0.00043 Score=67.72 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=28.7
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
.|..|.+.||+||||||+|+.|+ .+|++++..|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~ 107 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDH 107 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhH
Confidence 45669999999999999999999 58988776653
No 180
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.93 E-value=0.00037 Score=64.00 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=28.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHh-CCCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS-NAPFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l-~~~~i~ld~ 104 (464)
.-+.+.|||||||||+|+.|++.+ +++++..|.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~ 55 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDD 55 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCc
Confidence 458899999999999999999988 777777664
No 181
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.87 E-value=0.00059 Score=65.41 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=26.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeE
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFI 100 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i 100 (464)
..|.+.||+||||||+++.||+.+|.+++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 45899999999999999999999998766
No 182
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.80 E-value=0.00042 Score=71.60 Aligned_cols=35 Identities=9% Similarity=-0.067 Sum_probs=29.9
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
.|.-|+++|||||||||+|+.|++.+++.++..|.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~ 291 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDT 291 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccch
Confidence 45669999999999999999999999887776554
No 183
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.79 E-value=0.002 Score=66.03 Aligned_cols=24 Identities=29% Similarity=0.198 Sum_probs=21.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.|+||+|||||||.|+||....
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 478999999999999999998763
No 184
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.78 E-value=0.00069 Score=62.35 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=22.9
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
.-|+|+|||||||||+++.|++.++
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 5599999999999999999999884
No 185
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.74 E-value=0.0012 Score=59.50 Aligned_cols=33 Identities=30% Similarity=0.264 Sum_probs=26.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC---CCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN---APFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~---~~~i~ld~ 104 (464)
..|+|.|++|+||||+++.||+.++ .++..++.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 5699999999999999999998873 44555543
No 186
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.73 E-value=0.00072 Score=62.00 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=27.8
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC--CCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN--APFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~--~~~i~ld~ 104 (464)
.-+.+.||+|||||||++.|+..++ +.++..|.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~ 41 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGERVALLPMDH 41 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCc
Confidence 3488999999999999999999988 66665554
No 187
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.71 E-value=0.00088 Score=61.26 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=24.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeE
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFI 100 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i 100 (464)
.+.|+||+|+|||||.++|+..+++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 4889999999999999999999975543
No 188
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.69 E-value=0.00081 Score=60.67 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=21.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.|+||+|+||||+++.|+..++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccC
Confidence 478999999999999999998654
No 189
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.68 E-value=0.0012 Score=61.59 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=27.2
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEE
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIK 101 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ 101 (464)
-|.+.||+|||||++|+.||+.+|.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 48999999999999999999999999884
No 190
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.66 E-value=0.0011 Score=61.35 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=27.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC----CCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN----APFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~----~~~i~ld~ 104 (464)
..|+|.||+|+||||+++.|++.++ .+++.++.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 4589999999999999999998764 56776664
No 191
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.63 E-value=0.0016 Score=63.92 Aligned_cols=33 Identities=15% Similarity=0.056 Sum_probs=25.0
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCC--eEEeecC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAP--FIKIEAT 105 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~--~i~ld~s 105 (464)
-+.+.||+|+|||||.++|+....-. -+.+++.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~ 70 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNK 70 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCE
Confidence 37899999999999999999876322 3444443
No 192
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.63 E-value=0.00074 Score=62.40 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=26.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC-----CCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN-----APFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~-----~~~i~ld~ 104 (464)
.-+.+.||+|+|||||+++|+..+. ...+.+|.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 3488999999999999999999885 34555554
No 193
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.61 E-value=0.00089 Score=63.41 Aligned_cols=37 Identities=24% Similarity=0.167 Sum_probs=32.6
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCCeEEeecCcee
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFT 108 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~ 108 (464)
.+.+++.||||+|||+||..|++..+ +++..|...+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v~ 70 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDVY 70 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhhee
Confidence 46799999999999999999999977 88888877664
No 194
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.58 E-value=0.00023 Score=72.79 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=27.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEE
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIK 101 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ 101 (464)
.+++|+||+|+|||+++++||+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 359999999999999999999999999855
No 195
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.58 E-value=0.0012 Score=59.65 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=22.3
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
.-+.|+||+|+|||||++.|+..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999999764
No 196
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.57 E-value=0.0017 Score=58.87 Aligned_cols=33 Identities=30% Similarity=0.270 Sum_probs=25.8
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEeecCce
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKF 107 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~ 107 (464)
-+.|.||+|||||||++.|+..+ |-+.++....
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~--~~~~~~~~~~ 41 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL--AEIKISISHT 41 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS--SSEEECCCEE
T ss_pred EEEEECcCCCCHHHHHHHHHhhC--CCeEEeceec
Confidence 48899999999999999999986 3445544433
No 197
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.53 E-value=0.0027 Score=64.71 Aligned_cols=24 Identities=29% Similarity=0.127 Sum_probs=21.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.|.||+|||||||.|+||....
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999999998763
No 198
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.50 E-value=0.0012 Score=59.90 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=22.0
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.-+.|.||+||||||+++.|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 458999999999999999999886
No 199
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.43 E-value=0.0014 Score=60.70 Aligned_cols=25 Identities=24% Similarity=0.149 Sum_probs=22.5
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
.-+.|+||+|+||||+++.|+..+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3489999999999999999999875
No 200
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.42 E-value=0.0016 Score=59.05 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=22.1
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
.-+.|.||+|+|||||++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3488999999999999999998863
No 201
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.41 E-value=0.011 Score=62.08 Aligned_cols=38 Identities=13% Similarity=0.046 Sum_probs=30.7
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHh---CCCeEEeecCce
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEATKF 107 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s~~ 107 (464)
.|..|++.||+|+||||++-.||..+ |..+.-+++..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 46789999999999999999999766 666666666544
No 202
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.41 E-value=0.0017 Score=66.60 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=26.3
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEE
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIK 101 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ 101 (464)
..++++||||+|||||+++||..++..++.
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 569999999999999999999988776554
No 203
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.30 E-value=0.0034 Score=57.66 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=27.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHh---CCCeEEeecC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEAT 105 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s 105 (464)
.-+.+.||+||||||+++.|+..+ +.+++.++..
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 348999999999999999999876 6666665443
No 204
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.28 E-value=0.0035 Score=66.27 Aligned_cols=24 Identities=21% Similarity=-0.022 Sum_probs=21.3
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
..++|+||+|+|||+|+..|+...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 569999999999999999998654
No 205
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.27 E-value=0.0026 Score=69.47 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=32.4
Q ss_pred CcceEEEecCCCchHHHHHHHHHHh---CCCeEEeecCce
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEATKF 107 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s~~ 107 (464)
|..|+|.|+|||||||+|+.|++.+ |.+++.+|.-.+
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 4569999999999999999999999 999999975443
No 206
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.22 E-value=0.024 Score=53.22 Aligned_cols=32 Identities=16% Similarity=-0.094 Sum_probs=26.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHh---CCCeEEee
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIE 103 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld 103 (464)
+.+++++++|.|||++|-.+|-.. |.++..+.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 569999999999999999999665 66666554
No 207
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.21 E-value=0.0036 Score=57.13 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=26.9
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
.-++++||||+|||+|++.+|...+.+.+.++.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 348999999999999999999855666666654
No 208
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.18 E-value=0.0024 Score=61.45 Aligned_cols=31 Identities=16% Similarity=0.120 Sum_probs=27.1
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEe
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKI 102 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~l 102 (464)
..+-|.|||||||||+|+.||+.+|++.+.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 3477999999999999999999999887743
No 209
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.14 E-value=0.0038 Score=57.87 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.6
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCe
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSNAPF 99 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~~~~ 99 (464)
|+|+||+|+|||+|++.|.+.....|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 89999999999999999998864433
No 210
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.13 E-value=0.041 Score=59.44 Aligned_cols=75 Identities=16% Similarity=0.257 Sum_probs=49.2
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccc-cCceeeeeeeeecCceeEeeccCCccccCCC--CCchhhhc
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV-EGTTVNTKYGIIKTDHILFIASGAFHLAKPS--DLIPELQG 348 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlL-EG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~--~f~PEfl~ 348 (464)
|+-||+|||.+.+..... ..+...|.++. +|+.. .+-+|+++ .+|. .+.+.+.+
T Consensus 343 P~ivvVIDE~~~L~~~~~---------~~~~~~L~~Iar~GRa~----------GIhLIlaT----QRPs~d~I~~~Ira 399 (574)
T 2iut_A 343 PTIVVVVDEFADMMMIVG---------KKVEELIARIAQKARAA----------GIHLILAT----QRPSVDVITGLIKA 399 (574)
T ss_dssp CEEEEEESCCTTHHHHTC---------HHHHHHHHHHHHHCTTT----------TEEEEEEE----SCCCTTTSCHHHHH
T ss_pred CcEEEEEeCHHHHhhhhh---------HHHHHHHHHHHHHHhhC----------CeEEEEEe----cCcccccccHHHHh
Confidence 677999999998864311 12333444444 35422 33444443 3555 57777888
Q ss_pred cCCeEEEcCCCCHHHHHHHHH
Q psy2406 349 RFPIRVELDSLSISDFTRIMT 369 (464)
Q Consensus 349 R~d~iV~f~~Lt~~el~~Il~ 369 (464)
-|+..|.|..-+..+...|+.
T Consensus 400 n~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 400 NIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp TCCEEEEECCSCHHHHHHHHS
T ss_pred hhccEEEEEcCCHHHHHHhcC
Confidence 899999999999999888874
No 211
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.13 E-value=0.0015 Score=59.65 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=22.2
Q ss_pred eEEEecCCCchHHHHHHHHHHhCC
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSNA 97 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~~ 97 (464)
|.|.||+||||||+++.|++.++.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999999999853
No 212
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.09 E-value=0.003 Score=58.13 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=22.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
..+.|+||+|+|||||.+.|+..+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4589999999999999999998763
No 213
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.07 E-value=0.0035 Score=59.60 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=27.2
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEE
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIK 101 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ 101 (464)
.-|.+.|++|||||++|+.||+.+|++|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 358999999999999999999999999863
No 214
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.07 E-value=0.0046 Score=62.16 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=23.2
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhC
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
|.-+.+.||+||||||++++|+..++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34589999999999999999999875
No 215
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.01 E-value=0.0018 Score=63.78 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=23.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC-----CCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN-----APFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~-----~~~i~ld~ 104 (464)
.-|.+.||+||||||+|+.|++.++ ++++..|.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~ 43 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDA 43 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecch
Confidence 3489999999999999999999886 44554443
No 216
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.94 E-value=0.004 Score=57.14 Aligned_cols=23 Identities=26% Similarity=0.148 Sum_probs=20.9
Q ss_pred ceEEEecCCCchHHHHHHHHHHh
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
-+.|+||+|+|||||+++||...
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999854
No 217
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.92 E-value=0.0038 Score=57.55 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.8
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.|+||+|||||||.++|+..+.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 378999999999999999999874
No 218
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.91 E-value=0.0055 Score=57.40 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=22.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
+-+.|+||+|+|||+|++.|++...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999998864
No 219
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.91 E-value=0.0022 Score=67.03 Aligned_cols=34 Identities=24% Similarity=0.152 Sum_probs=28.0
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCeEEee
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPFIKIE 103 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld 103 (464)
.|..|+|+|+||+|||++++.||+.++.+++..+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~ 71 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTR 71 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCce
Confidence 4567999999999999999999999876554443
No 220
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.88 E-value=0.0041 Score=56.86 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=24.0
Q ss_pred cceEEEecCCCchHHHHHHHHHHh---CCCeEEe
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS---NAPFIKI 102 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~l 102 (464)
..++++||||+|||+|++++|..+ +.+.+.+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 348899999999999999999654 4444433
No 221
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.86 E-value=0.0056 Score=56.67 Aligned_cols=23 Identities=26% Similarity=0.101 Sum_probs=20.8
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
.-++|+||||+|||+|++.+|..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 34899999999999999999985
No 222
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.83 E-value=0.0039 Score=57.94 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=19.3
Q ss_pred cceEEEecCCCchHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLA 92 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA 92 (464)
.-+.|+||+|+|||||+++++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 348999999999999999999
No 223
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.81 E-value=0.0046 Score=61.07 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=22.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
.-+.|.||+|+|||||++.|+..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3488999999999999999999876
No 224
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.79 E-value=0.0045 Score=57.90 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=21.9
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.-+.|+||+|+|||||++.|+..+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 348899999999999999999987
No 225
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.79 E-value=0.004 Score=55.87 Aligned_cols=21 Identities=19% Similarity=0.042 Sum_probs=18.1
Q ss_pred cceEEEecCCCchHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLA 92 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA 92 (464)
.-+.|+||+|||||||++++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 348899999999999999754
No 226
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.78 E-value=0.0026 Score=67.83 Aligned_cols=30 Identities=27% Similarity=0.133 Sum_probs=25.9
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHhCCCe
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLSNAPF 99 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l~~~~ 99 (464)
.|.-|+|+|+||+||||+|+.||+.+++++
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 445699999999999999999999986554
No 227
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.77 E-value=0.0053 Score=58.13 Aligned_cols=26 Identities=12% Similarity=0.125 Sum_probs=23.6
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAP 98 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~ 98 (464)
-+-+.||+|+||||+++.|+..+|..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh
Confidence 48899999999999999999998765
No 228
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.74 E-value=0.0078 Score=56.95 Aligned_cols=31 Identities=13% Similarity=-0.069 Sum_probs=25.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC--CCeEEe
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN--APFIKI 102 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~--~~~i~l 102 (464)
.-|.|.||+||||||+++.|++.++ .+++..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 4588999999999999999999986 455443
No 229
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.63 E-value=0.0077 Score=55.75 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=27.6
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCeEEeecCc
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSNAPFIKIEATK 106 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~ 106 (464)
+|++|++|+|||++|..+|.. +.|.+.++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 799999999999999999988 88877766543
No 230
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.60 E-value=0.0066 Score=65.50 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=30.1
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhC----CCeEEeecC
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSN----APFIKIEAT 105 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~----~~~i~ld~s 105 (464)
|..|+|.|+|||||||+|+.|++.++ .+++.+|..
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 35699999999999999999999986 788888753
No 231
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.55 E-value=0.012 Score=54.44 Aligned_cols=33 Identities=15% Similarity=0.023 Sum_probs=25.0
Q ss_pred cceEEEecCCCchHHHHHHHHHHh---CCCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~ 104 (464)
.-++++||||+|||+||..+|... +.+.+.++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 348999999999999999887653 555555543
No 232
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.55 E-value=0.003 Score=60.38 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=26.0
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHh-CCCeE
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLS-NAPFI 100 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l-~~~~i 100 (464)
.|.-|.|.|++||||||+++.||+.+ +.+++
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 44569999999999999999999998 54444
No 233
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.51 E-value=0.063 Score=57.25 Aligned_cols=76 Identities=16% Similarity=0.257 Sum_probs=46.2
Q ss_pred CCcEEEEeccccccCcCCCCCCCCcchhhHHHhhhccc-cCceeeeeeeeecCceeEeeccCCccccCCC--CCchhhhc
Q psy2406 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV-EGTTVNTKYGIIKTDHILFIASGAFHLAKPS--DLIPELQG 348 (464)
Q Consensus 272 ~~sVIfIDEIDK~~~~~~~~~~~d~~~~gvq~~LLqlL-EG~~v~~~~~~i~Tsnil~I~ag~f~~~~p~--~f~PEfl~ 348 (464)
|+-||+|||...+... ....+...|..+. .|+.. .+.+|.++ .+|. .+...+.+
T Consensus 297 P~ivlvIDE~~~ll~~---------~~~~~~~~l~~Lar~gRa~----------GI~LIlaT----Qrp~~dvl~~~i~~ 353 (512)
T 2ius_A 297 PYIVVLVDEFADLMMT---------VGKKVEELIARLAQKARAA----------GIHLVLAT----QRPSVDVITGLIKA 353 (512)
T ss_dssp CEEEEEEETHHHHHHH---------HHHHHHHHHHHHHHHCGGG----------TEEEEEEE----SCCCTTTSCHHHHH
T ss_pred CcEEEEEeCHHHHHhh---------hhHHHHHHHHHHHHHhhhC----------CcEEEEEe----cCCccccccHHHHh
Confidence 5568999999877531 1112333333332 24321 12233332 2454 36667888
Q ss_pred cCCeEEEcCCCCHHHHHHHHHh
Q psy2406 349 RFPIRVELDSLSISDFTRIMTS 370 (464)
Q Consensus 349 R~d~iV~f~~Lt~~el~~Il~~ 370 (464)
-++..|.|.--+..+...|+..
T Consensus 354 n~~~RI~lrv~s~~dsr~ilg~ 375 (512)
T 2ius_A 354 NIPTRIAFTVSSKIDSRTILDQ 375 (512)
T ss_dssp HCCEEEEECCSSHHHHHHHHSS
T ss_pred hcCCeEEEEcCCHHHHHHhcCC
Confidence 8999999999999999988864
No 234
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.51 E-value=0.0084 Score=56.43 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=23.5
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhC
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
|.-|.+.|++||||||+++.|++.++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45599999999999999999999994
No 235
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.50 E-value=0.0072 Score=54.30 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=21.6
Q ss_pred ceEEEecCCCchHHHHHHHHHHh
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
-+.|.||.|+|||||.|+|+..+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 38899999999999999999987
No 236
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.46 E-value=0.0071 Score=57.12 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=21.7
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.|+||+|+|||||.++|+....
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 488999999999999999998864
No 237
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.41 E-value=0.0086 Score=59.47 Aligned_cols=26 Identities=19% Similarity=0.082 Sum_probs=23.2
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHh
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.|..+.++||+||||||++++||..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34679999999999999999999876
No 238
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.39 E-value=0.0046 Score=57.74 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=15.3
Q ss_pred cceEEEecCCCchHHHHHHHH-HHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLA-KLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA-~~l 95 (464)
.-+.|.||+||||||+++.|+ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 348899999999999999999 775
No 239
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.39 E-value=0.015 Score=62.34 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=26.0
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCC--CeEEeecC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNA--PFIKIEAT 105 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~--~~i~ld~s 105 (464)
..+.+.||+|+|||||.+.|+..+.. --+.+|+.
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~ 405 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGH 405 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCE
Confidence 35889999999999999999987632 24555553
No 240
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.31 E-value=0.0093 Score=58.78 Aligned_cols=25 Identities=12% Similarity=-0.093 Sum_probs=22.8
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
.-|.+.||+||||||||+.|+..++
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4589999999999999999999885
No 241
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.31 E-value=0.0083 Score=58.15 Aligned_cols=24 Identities=8% Similarity=-0.046 Sum_probs=21.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
..++++||+|+||||+.++|+..+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC
Confidence 348999999999999999999876
No 242
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.27 E-value=0.017 Score=60.32 Aligned_cols=37 Identities=19% Similarity=0.084 Sum_probs=29.8
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHh---CCCeEEeecCc
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEATK 106 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s~ 106 (464)
.|..+++.||+|+||||++..||..+ |..+.-+++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 46779999999999999999999766 66666666543
No 243
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.25 E-value=0.0091 Score=55.16 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=21.3
Q ss_pred ceEEEecCCCchHHHHHHHHHHh
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.+.++||+|+|||||.+.||..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48899999999999999999887
No 244
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.25 E-value=0.0063 Score=64.93 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=24.3
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNA 97 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~ 97 (464)
..|.|.|++||||||+|++||+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 56999999999999999999999985
No 245
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.23 E-value=0.014 Score=58.05 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=27.4
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHh---CCCeEEeec
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEA 104 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~ 104 (464)
.|.-+++.||+|+||||+++.||..+ +..+.-+++
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 45679999999999999999999776 444544444
No 246
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.20 E-value=0.016 Score=58.97 Aligned_cols=33 Identities=21% Similarity=-0.005 Sum_probs=26.9
Q ss_pred ceEEEecCCCchHHHHHHHHHHh---CCCeEEeecC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEAT 105 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s 105 (464)
-++++||||||||+|+.++|..+ +.+.+.+++.
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 48899999999999999999774 5566666654
No 247
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.14 E-value=0.048 Score=64.25 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=27.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCC--eEEeecC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAP--FIKIEAT 105 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~--~i~ld~s 105 (464)
..+.++||+|||||||++.|..++... -+.+|+.
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~ 480 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGV 480 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred cEEEEEecCCCcHHHHHHHhccccccccCcccCCCc
Confidence 458899999999999999999998654 4555553
No 248
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.12 E-value=0.01 Score=59.13 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=22.3
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
.-+.+.||+|||||||++.|+..+.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhcc
Confidence 4488999999999999999998873
No 249
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.08 E-value=0.011 Score=58.56 Aligned_cols=25 Identities=24% Similarity=0.017 Sum_probs=22.5
Q ss_pred CcceEEEecCCCchHHHHHHHHHHh
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
|.-++|+||+|+||||+++.||..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999876
No 250
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.07 E-value=0.011 Score=57.14 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=20.8
Q ss_pred ceEEEecCCCchHHHHHHHHHHh
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
-+++.||||+|||+|++++|..+
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999765
No 251
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.05 E-value=0.013 Score=57.90 Aligned_cols=36 Identities=22% Similarity=0.102 Sum_probs=27.7
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHh----CCCeEEeecC
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLS----NAPFIKIEAT 105 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l----~~~~i~ld~s 105 (464)
.|..++|+||+|+||||++..||..+ |..+.-+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 35679999999999999999999665 4455555543
No 252
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.96 E-value=0.013 Score=58.75 Aligned_cols=26 Identities=19% Similarity=0.051 Sum_probs=23.2
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHh
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.|.-+.|+||+|+||||++++||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45669999999999999999999876
No 253
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.93 E-value=0.013 Score=56.36 Aligned_cols=24 Identities=21% Similarity=-0.027 Sum_probs=21.0
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.-++++||+|+|||+|++.+|..+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 348999999999999999999654
No 254
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.93 E-value=0.019 Score=57.82 Aligned_cols=24 Identities=25% Similarity=0.126 Sum_probs=21.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.-+.++||||+|||+|++.+|...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 348899999999999999999876
No 255
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.92 E-value=0.018 Score=51.31 Aligned_cols=26 Identities=15% Similarity=-0.098 Sum_probs=23.1
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhC
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
|+-.+++||+|+|||+|.++|+-.++
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 45578999999999999999998875
No 256
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.89 E-value=0.021 Score=56.68 Aligned_cols=24 Identities=17% Similarity=0.005 Sum_probs=21.5
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.-++++||||+|||+||..+|...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHH
Confidence 448999999999999999999765
No 257
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.89 E-value=0.039 Score=50.98 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=24.2
Q ss_pred ceEEEecCCCchHHHHHHHHHH----hCCCeEEeec
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKL----SNAPFIKIEA 104 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~----l~~~~i~ld~ 104 (464)
-+++.|+||+|||+||..+|.. .+.+.+-++.
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 4899999999999999987743 2566554443
No 258
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.79 E-value=0.013 Score=63.01 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=22.9
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
..+.|+||+|||||||+++||..++
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 4589999999999999999999985
No 259
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.77 E-value=0.015 Score=49.64 Aligned_cols=22 Identities=36% Similarity=0.324 Sum_probs=20.1
Q ss_pred ceEEEecCCCchHHHHHHHHHH
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
+++++|++|+|||+|..+++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999864
No 260
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.76 E-value=0.018 Score=60.01 Aligned_cols=38 Identities=21% Similarity=0.136 Sum_probs=30.3
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHh---CCCeEEeecCce
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEATKF 107 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s~~ 107 (464)
.|..|+++||||+||||++..||..+ |.....+++..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 45689999999999999999999776 456666666544
No 261
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.76 E-value=0.014 Score=58.10 Aligned_cols=24 Identities=13% Similarity=0.018 Sum_probs=22.1
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
..+.|+||+|+|||||++.|+..+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 348899999999999999999998
No 262
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.75 E-value=0.016 Score=54.92 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=27.6
Q ss_pred ceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
.|-|.|..|||||++++.+++ +|+|++..|.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 378999999999999999998 9999986664
No 263
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.71 E-value=0.01 Score=54.10 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=22.3
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
+.+.+.||+|||||||++.|+..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3588999999999999999998873
No 264
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.68 E-value=0.014 Score=58.84 Aligned_cols=27 Identities=22% Similarity=0.159 Sum_probs=24.2
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAP 98 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~ 98 (464)
..+.++||+|||||||+++|+..+...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 468999999999999999999998654
No 265
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.65 E-value=0.027 Score=54.10 Aligned_cols=33 Identities=18% Similarity=0.075 Sum_probs=26.2
Q ss_pred cceEEEecCCCchHHHHHHHHHHh---CCCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~ 104 (464)
-+|++.|+||||||++|-.+|..+ |..+..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 359999999999999999999765 666554444
No 266
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.65 E-value=0.017 Score=58.94 Aligned_cols=26 Identities=23% Similarity=-0.005 Sum_probs=23.1
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHh
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.|.-++|+||+|+||||+++.||..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34569999999999999999999876
No 267
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.62 E-value=0.019 Score=48.77 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=20.1
Q ss_pred ceEEEecCCCchHHHHHHHHHH
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
+|+++|++|+|||+|..+++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999999864
No 268
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.62 E-value=0.016 Score=58.84 Aligned_cols=24 Identities=8% Similarity=-0.079 Sum_probs=21.8
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
+.+++.||+||||||+.++++..+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 458999999999999999999876
No 269
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.61 E-value=0.018 Score=51.88 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.3
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
-.+.++||+|||||+|.++++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 359999999999999999999754
No 270
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.60 E-value=0.017 Score=52.14 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.8
Q ss_pred ceEEEecCCCchHHHHHHHHHHh
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.++++||+|+|||+|.++++...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 49999999999999999998753
No 271
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.60 E-value=0.013 Score=55.73 Aligned_cols=24 Identities=17% Similarity=0.027 Sum_probs=21.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.++||+|+|||||.++|+....
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 478999999999999999998763
No 272
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.59 E-value=0.014 Score=55.08 Aligned_cols=24 Identities=21% Similarity=0.019 Sum_probs=21.2
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.+.||+|+|||||.++|+....
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 378999999999999999997763
No 273
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.58 E-value=0.023 Score=52.69 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=27.8
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCce
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKF 107 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~ 107 (464)
.++||.||||+|||++|..|.+. |..++.=|...+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r-G~~lvaDD~v~i 51 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR-GHQLVCDDVIDL 51 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT-TCEEEESSEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-CCeEecCCEEEE
Confidence 67999999999999999999984 666665454444
No 274
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.56 E-value=0.024 Score=54.05 Aligned_cols=23 Identities=13% Similarity=-0.015 Sum_probs=18.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHh
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
-|.|.||+|+||||+++.|++.+
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48889999999999999999887
No 275
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.56 E-value=0.023 Score=59.05 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=21.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHh
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.+++.||||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 59999999999999999999877
No 276
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.55 E-value=0.017 Score=54.18 Aligned_cols=22 Identities=23% Similarity=-0.170 Sum_probs=20.2
Q ss_pred ceEEEecCCCchHHHHHHHHHH
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-+.+.||+|+|||||.++|+..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3889999999999999999976
No 277
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.53 E-value=0.019 Score=49.20 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.5
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-+|+++|++|+|||+|..++...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999999864
No 278
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.49 E-value=0.032 Score=56.33 Aligned_cols=33 Identities=21% Similarity=-0.001 Sum_probs=25.9
Q ss_pred cceEEEecCCCchHHHHHHHHHHh---CCCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~ 104 (464)
.-++++||||+|||+||..+|... +.+.+.++.
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 348999999999999999999654 555555554
No 279
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.48 E-value=0.02 Score=55.75 Aligned_cols=23 Identities=17% Similarity=0.223 Sum_probs=21.3
Q ss_pred ceEEEecCCCchHHHHHHHHHHh
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
++.++||+|+|||||.++|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999876
No 280
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.48 E-value=0.017 Score=55.27 Aligned_cols=25 Identities=16% Similarity=-0.007 Sum_probs=22.0
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
.-+.+.||+|+|||||.|+|+....
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4488999999999999999998763
No 281
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.48 E-value=0.018 Score=58.69 Aligned_cols=24 Identities=8% Similarity=-0.046 Sum_probs=21.8
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
..+++.||+|+||||+.++|+..+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 458999999999999999999876
No 282
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.46 E-value=0.031 Score=55.87 Aligned_cols=36 Identities=14% Similarity=0.047 Sum_probs=28.6
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHh---CCCeEEeecC
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEAT 105 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s 105 (464)
.|..++++||+|+||||++..||..+ +..+.-+++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45679999999999999999999776 5566655553
No 283
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.46 E-value=0.017 Score=58.41 Aligned_cols=25 Identities=20% Similarity=0.088 Sum_probs=22.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
..+++.||+|+|||||.++|+....
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4699999999999999999998874
No 284
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.45 E-value=0.022 Score=52.04 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=21.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
+-+.+.||+|+|||+|+..|+..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 458999999999999999999876
No 285
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.41 E-value=0.023 Score=51.67 Aligned_cols=24 Identities=25% Similarity=0.152 Sum_probs=21.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
..|+++||+|+|||+|..+++...
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 569999999999999999998764
No 286
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.40 E-value=0.036 Score=52.09 Aligned_cols=31 Identities=16% Similarity=-0.041 Sum_probs=25.0
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC---CCeEEe
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN---APFIKI 102 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~---~~~i~l 102 (464)
.-|.|.||+|+||||+++.|++.+. .+++.+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 3488999999999999999998874 455433
No 287
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.39 E-value=0.029 Score=56.20 Aligned_cols=22 Identities=18% Similarity=0.049 Sum_probs=20.4
Q ss_pred ceEEEecCCCchHHHHHHHHHH
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-++++||||+|||+||..+|..
T Consensus 124 i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999999986
No 288
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.36 E-value=0.022 Score=48.52 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=20.3
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-+|+++|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999988864
No 289
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.33 E-value=0.059 Score=50.92 Aligned_cols=28 Identities=25% Similarity=0.082 Sum_probs=24.8
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCe
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPF 99 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~ 99 (464)
.-|.|.||+|+||||+++.|++.++.+.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 4489999999999999999999998743
No 290
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.32 E-value=0.017 Score=55.10 Aligned_cols=24 Identities=13% Similarity=0.015 Sum_probs=21.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.-+.++||+|+|||||.++|+..+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 348899999999999999999775
No 291
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.29 E-value=0.019 Score=61.09 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=26.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC--CCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN--APFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~--~~~i~ld~ 104 (464)
.++++.||+||||||+.++|+..+. ...+.+..
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied 295 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED 295 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcC
Confidence 5699999999999999999998873 23555543
No 292
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.28 E-value=0.024 Score=48.36 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=20.6
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-+|+++|++|+|||+|..+++..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 293
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.28 E-value=0.02 Score=58.36 Aligned_cols=24 Identities=29% Similarity=0.203 Sum_probs=21.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.|.||+|||||||.|+||....
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 378999999999999999998763
No 294
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.26 E-value=0.017 Score=55.89 Aligned_cols=24 Identities=21% Similarity=0.076 Sum_probs=21.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.++||+|+|||||.|+|+..+.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 378999999999999999998763
No 295
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.25 E-value=0.024 Score=48.57 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.3
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-+|+++|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999998754
No 296
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.24 E-value=0.024 Score=51.72 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=21.5
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.-+.+.||+|+|||+|.+.|+..+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 458999999999999999999875
No 297
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.23 E-value=0.023 Score=49.17 Aligned_cols=22 Identities=32% Similarity=0.205 Sum_probs=19.7
Q ss_pred cceEEEecCCCchHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAK 93 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~ 93 (464)
-.|+++|++|+|||+|..++..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 3599999999999999998874
No 298
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.22 E-value=0.063 Score=53.04 Aligned_cols=23 Identities=30% Similarity=0.196 Sum_probs=20.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHh
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
-+++.|+||+|||+||..+|...
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 38999999999999999999654
No 299
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.21 E-value=0.026 Score=48.43 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=20.2
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-+|+++|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35999999999999999998853
No 300
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.20 E-value=0.025 Score=48.57 Aligned_cols=23 Identities=26% Similarity=0.211 Sum_probs=20.6
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-+|+++|++|+|||+|..++...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999999865
No 301
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.18 E-value=0.039 Score=56.00 Aligned_cols=34 Identities=18% Similarity=0.039 Sum_probs=27.3
Q ss_pred cceEEEecCCCchHHHHHHHHHHh---CCCeEEeecC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEAT 105 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s 105 (464)
..++++||||+|||+||..+|..+ |.+.+.++..
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 448999999999999999999764 5666666653
No 302
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.17 E-value=0.019 Score=51.08 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=19.8
Q ss_pred ceEEEecCCCchHHHHHHHHHH
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
.++++|++|||||+|.++++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999998863
No 303
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.14 E-value=0.028 Score=51.41 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=19.6
Q ss_pred ceEEEecCCCchHHHHHHHHHHh
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
-++++||+|+|||+++..++..+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999997777654
No 304
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.09 E-value=0.029 Score=49.77 Aligned_cols=24 Identities=25% Similarity=0.152 Sum_probs=21.2
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
..|+++|++|+|||+|..+++...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999998653
No 305
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.09 E-value=0.019 Score=57.49 Aligned_cols=25 Identities=12% Similarity=0.089 Sum_probs=22.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
..+++.||+|+|||||.++|+....
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4699999999999999999998864
No 306
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.09 E-value=0.02 Score=55.21 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=21.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.++||+|+|||||.|+|+....
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998763
No 307
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.08 E-value=0.025 Score=49.36 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=20.3
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
..+.++|++|+|||+|.++++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999753
No 308
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.07 E-value=0.027 Score=48.92 Aligned_cols=23 Identities=30% Similarity=0.255 Sum_probs=20.5
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998864
No 309
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.07 E-value=0.049 Score=59.05 Aligned_cols=33 Identities=12% Similarity=0.047 Sum_probs=21.4
Q ss_pred ceEEEecCCCchHH-HHHHHHHHh--CCCeEEeecC
Q psy2406 73 DMVIKVLLLVGKTE-IARRLAKLS--NAPFIKIEAT 105 (464)
Q Consensus 73 ~iLl~GP~G~GKT~-LAr~lA~~l--~~~~i~ld~s 105 (464)
-.|+.||||||||+ ++..++..+ +.+++-+..+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 47899999999995 444444433 5555555443
No 310
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.06 E-value=0.024 Score=54.40 Aligned_cols=22 Identities=18% Similarity=0.010 Sum_probs=20.3
Q ss_pred ceEEEecCCCchHHHHHHHHHH
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-+.+.||+|+|||||.++|+..
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999986
No 311
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.06 E-value=0.024 Score=49.98 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=20.6
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
..++++|++|+|||+|.++++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999853
No 312
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.03 E-value=0.024 Score=50.15 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.9
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..+++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56999999999999999999864
No 313
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.02 E-value=0.024 Score=54.98 Aligned_cols=23 Identities=22% Similarity=0.033 Sum_probs=20.8
Q ss_pred ceEEEecCCCchHHHHHHHHHHh
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
-+.+.||+|+|||||.++|+...
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999863
No 314
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.02 E-value=0.025 Score=48.50 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=19.5
Q ss_pred ceEEEecCCCchHHHHHHHHH
Q psy2406 73 DMVIKVLLLVGKTEIARRLAK 93 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~ 93 (464)
.|+++|++|+|||+|..+++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 599999999999999999885
No 315
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.01 E-value=0.021 Score=54.44 Aligned_cols=24 Identities=21% Similarity=0.054 Sum_probs=21.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.+.||+|+|||||.|+|+....
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998763
No 316
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.00 E-value=0.027 Score=48.52 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=19.1
Q ss_pred ceEEEecCCCchHHHHHHHHH
Q psy2406 73 DMVIKVLLLVGKTEIARRLAK 93 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~ 93 (464)
.|+++|++|+|||+|..+++.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 499999999999999999864
No 317
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.00 E-value=0.028 Score=48.77 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=20.4
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-+|+++|++|+|||+|..++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999754
No 318
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.00 E-value=0.021 Score=54.46 Aligned_cols=23 Identities=17% Similarity=0.021 Sum_probs=21.2
Q ss_pred ceEEEecCCCchHHHHHHHHHHh
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.+.+.||+|+|||||.++|+...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999876
No 319
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.99 E-value=0.029 Score=48.28 Aligned_cols=23 Identities=26% Similarity=0.236 Sum_probs=20.5
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999998854
No 320
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.99 E-value=0.021 Score=53.76 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=21.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.+.||+|+|||||.++|+....
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998763
No 321
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.98 E-value=0.021 Score=54.75 Aligned_cols=25 Identities=12% Similarity=0.009 Sum_probs=21.9
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
.-+.+.||+|+|||||.++|+..+.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3478999999999999999998763
No 322
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.98 E-value=0.021 Score=55.49 Aligned_cols=23 Identities=22% Similarity=0.066 Sum_probs=21.0
Q ss_pred ceEEEecCCCchHHHHHHHHHHh
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
-+.++||+|+|||||.++|+...
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999999876
No 323
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.98 E-value=0.029 Score=47.97 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=20.4
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-+|+++|++|+|||+|..++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999863
No 324
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.97 E-value=0.029 Score=47.98 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.5
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999863
No 325
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.96 E-value=0.03 Score=48.01 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=19.9
Q ss_pred ceEEEecCCCchHHHHHHHHHH
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
+|+++|++|+|||+|..++...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 326
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.95 E-value=0.03 Score=58.08 Aligned_cols=24 Identities=13% Similarity=-0.092 Sum_probs=22.0
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
.+++.||+|+||||+.++++..+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcC
Confidence 489999999999999999999875
No 327
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.94 E-value=0.028 Score=59.87 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=22.4
Q ss_pred CcceEEEecCCCchHHHHHHHHHHh
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
+.-++|+||+|||||||+++||..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 3568999999999999999999876
No 328
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.93 E-value=0.05 Score=54.97 Aligned_cols=36 Identities=6% Similarity=-0.101 Sum_probs=27.0
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHh-----CCCeEEeecC
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLS-----NAPFIKIEAT 105 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l-----~~~~i~ld~s 105 (464)
.++.++++||||+|||+||-.++... +...+-+|+.
T Consensus 27 ~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E 67 (333)
T 3io5_A 27 QSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE 67 (333)
T ss_dssp CSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 33458999999999999988887554 5566666653
No 329
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.92 E-value=0.029 Score=48.22 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=18.4
Q ss_pred ceEEEecCCCchHHHHHHHH
Q psy2406 73 DMVIKVLLLVGKTEIARRLA 92 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA 92 (464)
.|+++|++|+|||+|.++++
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 49999999999999999885
No 330
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.89 E-value=0.03 Score=49.04 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=20.6
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-+|+++|++|+|||+|..++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999863
No 331
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.86 E-value=0.023 Score=55.24 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=21.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.|+||+|+|||||.++|+..+.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Confidence 478999999999999999998763
No 332
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.86 E-value=0.032 Score=48.46 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=20.4
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
..|+++|++|+|||+|..++...
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56999999999999999998753
No 333
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.85 E-value=0.055 Score=51.11 Aligned_cols=33 Identities=18% Similarity=0.084 Sum_probs=27.8
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~ 104 (464)
.+++++||||+|||.+|..++..++.+.+.+..
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P 141 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 359999999999999999999988777666544
No 334
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.84 E-value=0.033 Score=48.25 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=20.9
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999875
No 335
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.84 E-value=0.024 Score=53.69 Aligned_cols=25 Identities=12% Similarity=-0.041 Sum_probs=22.0
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
.-+.+.||+|+|||||.++|+..+.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3488999999999999999998764
No 336
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.84 E-value=0.026 Score=57.98 Aligned_cols=24 Identities=25% Similarity=0.173 Sum_probs=21.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.|+||+|||||||.|+||....
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Confidence 378999999999999999998763
No 337
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.83 E-value=0.034 Score=48.14 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=20.4
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..+++..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999853
No 338
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.81 E-value=0.04 Score=59.00 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=27.1
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhC---CCeEEeec
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSN---APFIKIEA 104 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~---~~~i~ld~ 104 (464)
+..|+|.|++||||||+|+.|++.++ .++..+|.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~ 408 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDG 408 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECc
Confidence 35689999999999999999999874 45555553
No 339
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.80 E-value=0.024 Score=54.81 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=22.0
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
.-+.+.||+|+|||||.++|+..+.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 3488999999999999999998763
No 340
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.80 E-value=0.027 Score=57.41 Aligned_cols=24 Identities=17% Similarity=0.059 Sum_probs=21.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.|.||+|||||||.|+||....
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 378999999999999999998763
No 341
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.80 E-value=0.05 Score=54.99 Aligned_cols=33 Identities=21% Similarity=0.112 Sum_probs=27.3
Q ss_pred cceEEEecCCCchHHHHHHHHHHh---CCCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~ 104 (464)
.+++++||||+|||++++.++..+ |..++.+|.
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 679999999999999999998654 666666664
No 342
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.79 E-value=0.027 Score=57.32 Aligned_cols=24 Identities=21% Similarity=-0.007 Sum_probs=21.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.|.||+|||||||.|+||....
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHCCCC
Confidence 378999999999999999998763
No 343
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.78 E-value=0.029 Score=49.92 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.7
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-+|+++|++|+|||+|..++...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 56999999999999999999854
No 344
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.78 E-value=0.024 Score=55.17 Aligned_cols=24 Identities=21% Similarity=0.072 Sum_probs=21.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.+.||+|+|||||.++|+..+.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998763
No 345
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.77 E-value=0.031 Score=48.53 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=20.4
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 45999999999999999998854
No 346
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.76 E-value=0.048 Score=53.85 Aligned_cols=35 Identities=20% Similarity=0.078 Sum_probs=28.6
Q ss_pred CcceEEEecCCCchHHHHHHHHHHh---CCCeEEeecC
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEAT 105 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s 105 (464)
|..+++.||+|+||||++..||..+ |....-+++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 5678999999999999999999776 6666666654
No 347
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.74 E-value=0.035 Score=49.14 Aligned_cols=23 Identities=26% Similarity=0.167 Sum_probs=20.7
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|.++++..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999999864
No 348
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.74 E-value=0.025 Score=55.42 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=21.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.++||+|+|||||.|+|+..+.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999999998763
No 349
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.74 E-value=0.038 Score=50.42 Aligned_cols=25 Identities=20% Similarity=0.115 Sum_probs=22.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
..+++.|++|+|||+|+..|+..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4599999999999999999998763
No 350
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.70 E-value=0.036 Score=48.59 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=20.5
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999754
No 351
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.70 E-value=0.029 Score=57.42 Aligned_cols=24 Identities=29% Similarity=0.181 Sum_probs=21.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.|.||+|||||||.|+||....
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHHcCCC
Confidence 378999999999999999998763
No 352
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.67 E-value=0.035 Score=48.59 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=20.4
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-+|+++|++|+|||+|..++...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999999854
No 353
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.66 E-value=0.035 Score=48.37 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=20.7
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-+|+++|++|+|||+|..+++..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 56999999999999999999864
No 354
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.66 E-value=0.026 Score=54.55 Aligned_cols=24 Identities=21% Similarity=0.030 Sum_probs=21.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.+.||+|+|||||.++|+....
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998763
No 355
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.66 E-value=0.026 Score=54.31 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=21.3
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.+.||+|+|||||.++|+..+.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999999998763
No 356
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.65 E-value=0.036 Score=47.96 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=20.7
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 357
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.64 E-value=0.036 Score=47.67 Aligned_cols=23 Identities=35% Similarity=0.244 Sum_probs=20.3
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999753
No 358
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.63 E-value=0.027 Score=54.59 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=21.3
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.+.||+|+|||||.++|+....
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 477999999999999999998763
No 359
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.63 E-value=0.058 Score=53.04 Aligned_cols=35 Identities=23% Similarity=0.016 Sum_probs=27.6
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHh---CCCeEEeec
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEA 104 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~ 104 (464)
.+..+.++||+|+||||+++.||..+ +..+.-+++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 45678899999999999999999775 555555554
No 360
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.59 E-value=0.038 Score=48.56 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.6
Q ss_pred ceEEEecCCCchHHHHHHHHHH
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
.|+++|++|+|||+|..+++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4999999999999999998753
No 361
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.59 E-value=0.037 Score=48.65 Aligned_cols=23 Identities=35% Similarity=0.277 Sum_probs=20.9
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999999875
No 362
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.58 E-value=0.11 Score=53.82 Aligned_cols=32 Identities=19% Similarity=0.058 Sum_probs=24.9
Q ss_pred ceEEEecCCCchHHHHHHHHHHh----CCCeEEeec
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS----NAPFIKIEA 104 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l----~~~~i~ld~ 104 (464)
-+++.||||+|||+||..+|... |.|++.++.
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 48899999999999999998653 456555543
No 363
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.58 E-value=0.038 Score=48.95 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=20.4
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
..|+++|++|+|||+|..++...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56999999999999999998753
No 364
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.57 E-value=0.05 Score=49.79 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=21.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
..+++.|++|||||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 459999999999999999999875
No 365
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.56 E-value=0.034 Score=48.24 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=19.5
Q ss_pred cceEEEecCCCchHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAK 93 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~ 93 (464)
-+|+++|++|+|||+|..++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4599999999999999998864
No 366
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.56 E-value=0.061 Score=55.46 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=19.7
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
.-++|+||||||||+|++.+|-.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHH
Confidence 34889999999999999988744
No 367
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.55 E-value=0.057 Score=58.12 Aligned_cols=32 Identities=16% Similarity=-0.005 Sum_probs=25.4
Q ss_pred CcceEEEecCCCchHHHHHHHHHHh---CCCeEEe
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLS---NAPFIKI 102 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~l 102 (464)
.+.+++.||||||||+++++++..+ +.+++-+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 3679999999999999999999765 5555433
No 368
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.52 E-value=0.024 Score=57.49 Aligned_cols=24 Identities=25% Similarity=0.059 Sum_probs=21.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.|.||+|||||||.|+||....
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCccHHHHHHHHHcCCC
Confidence 478999999999999999998763
No 369
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.51 E-value=0.044 Score=52.46 Aligned_cols=25 Identities=20% Similarity=0.104 Sum_probs=22.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHhC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
.-|.|.||+|+||||+++.|++.+.
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999998873
No 370
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.49 E-value=0.037 Score=48.73 Aligned_cols=24 Identities=21% Similarity=0.079 Sum_probs=20.8
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
-.|+++|++|+|||+|.+.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 459999999999999998887654
No 371
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.48 E-value=0.029 Score=54.01 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=21.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.+.||+|+|||||.++|+....
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998764
No 372
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.48 E-value=0.038 Score=49.08 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.8
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999998864
No 373
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.48 E-value=0.04 Score=48.01 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.5
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999998854
No 374
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.47 E-value=0.04 Score=48.11 Aligned_cols=23 Identities=22% Similarity=0.056 Sum_probs=20.2
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999998753
No 375
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.47 E-value=0.062 Score=54.75 Aligned_cols=34 Identities=21% Similarity=0.015 Sum_probs=27.0
Q ss_pred cceEEEecCCCchHHHHHHHHHHh---CCCeEEeecC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEAT 105 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s 105 (464)
.-++++||||+|||+||..+|... |.+.+.++..
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 458999999999999999998764 5666666653
No 376
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.44 E-value=0.036 Score=57.10 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=21.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.-+.|.||+|||||||.|+||...
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 348899999999999999999865
No 377
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.40 E-value=0.041 Score=48.21 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=20.5
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-+|+++|++|+|||+|..++...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999854
No 378
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.38 E-value=0.045 Score=49.09 Aligned_cols=23 Identities=22% Similarity=0.096 Sum_probs=20.6
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
..|+++|++|+|||+|.++++..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999863
No 379
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.37 E-value=0.041 Score=48.43 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=20.4
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
..|+++|++|+|||+|..++...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999998754
No 380
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.37 E-value=0.058 Score=57.36 Aligned_cols=35 Identities=23% Similarity=-0.009 Sum_probs=27.8
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHh---CCCeEEeec
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEA 104 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~ 104 (464)
.|..|+++|+|||||||++..||..+ |.....+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 45789999999999999999999766 666666665
No 381
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.35 E-value=0.042 Score=48.99 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=20.5
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998854
No 382
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.35 E-value=0.039 Score=54.28 Aligned_cols=23 Identities=17% Similarity=0.021 Sum_probs=20.7
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
.-++++||||+|||+||..+|..
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999999999975
No 383
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.34 E-value=0.043 Score=47.73 Aligned_cols=23 Identities=22% Similarity=0.114 Sum_probs=20.6
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-+|+++|++|+|||+|..++...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999998764
No 384
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.33 E-value=0.039 Score=51.64 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=23.0
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeE
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFI 100 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i 100 (464)
.-+.|.||.|+||||+++.|+.. +..+.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~-~g~v~ 48 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY-KNDIC 48 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG-TTTEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhc-cCCeE
Confidence 34889999999999999999987 43333
No 385
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.29 E-value=0.033 Score=54.13 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=21.3
Q ss_pred ceEEEecCCCchHHHHHHHHHHh
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.+.+.||+|+|||||.|+|+...
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999886
No 386
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.27 E-value=0.039 Score=57.91 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=21.2
Q ss_pred ceEEEecCCCchHHHHHHHHHHh
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.+.++||+|||||||+|.||...
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 49999999999999999999875
No 387
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.26 E-value=0.075 Score=55.34 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=31.6
Q ss_pred CCCcceEEEecCCCchHHHHHHHHHHh----CCCeEEeecCce
Q psy2406 69 NVILDMVIKVLLLVGKTEIARRLAKLS----NAPFIKIEATKF 107 (464)
Q Consensus 69 ~~p~~iLl~GP~G~GKT~LAr~lA~~l----~~~~i~ld~s~~ 107 (464)
..|..|+++|++|+||||++-.||..+ |....-+|+-.+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 356789999999999999999999665 777777777544
No 388
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.24 E-value=0.046 Score=47.66 Aligned_cols=23 Identities=22% Similarity=0.002 Sum_probs=20.4
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-+|+++|++|+|||+|..++...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998854
No 389
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.21 E-value=0.05 Score=51.75 Aligned_cols=27 Identities=19% Similarity=0.095 Sum_probs=23.3
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCC
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNA 97 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~ 97 (464)
+.-|.|.|++|+||||+++.|++.++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345889999999999999999988754
No 390
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.20 E-value=0.049 Score=47.61 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=20.0
Q ss_pred cceEEEecCCCchHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAK 93 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~ 93 (464)
..|+++|++|+|||+|..++..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4699999999999999999884
No 391
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.18 E-value=0.021 Score=51.56 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=19.9
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
..+.++||+|+|||+|.++|+..
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999988643
No 392
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.17 E-value=0.047 Score=48.29 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=20.6
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 393
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.16 E-value=0.049 Score=48.45 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=21.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
-.|+++|++|+|||+|..++....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 469999999999999999998754
No 394
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.15 E-value=0.037 Score=48.26 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=20.6
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|||||+|..+++..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999998864
No 395
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.15 E-value=0.048 Score=48.19 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=20.5
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
..++++|+||+|||+|..+++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999864
No 396
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.12 E-value=0.05 Score=48.54 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=20.6
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-+|+++|++|+|||+|..++...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 397
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.11 E-value=0.048 Score=48.34 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=20.7
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..+++..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999998864
No 398
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.08 E-value=0.049 Score=48.70 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.8
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..+++..
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 399
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.07 E-value=0.051 Score=49.19 Aligned_cols=23 Identities=22% Similarity=0.030 Sum_probs=20.7
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
.+|+++|++|+|||+|..++...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 57999999999999999998863
No 400
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.07 E-value=0.13 Score=53.24 Aligned_cols=31 Identities=23% Similarity=0.206 Sum_probs=24.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHh----CCCeEEee
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS----NAPFIKIE 103 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l----~~~~i~ld 103 (464)
-+++.||||+|||+|+..+|... |.+++.++
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 48899999999999999998654 44655444
No 401
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.06 E-value=0.025 Score=57.40 Aligned_cols=24 Identities=29% Similarity=0.129 Sum_probs=21.3
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.|+||+|||||||.|+||....
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 378999999999999999998763
No 402
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.06 E-value=0.14 Score=51.77 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=24.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHh---CCCeEEee
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS---NAPFIKIE 103 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld 103 (464)
-+++.|+||+|||+||..+|... |.++..++
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 38899999999999999998764 55554443
No 403
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.04 E-value=0.072 Score=53.44 Aligned_cols=33 Identities=15% Similarity=0.034 Sum_probs=26.1
Q ss_pred cceEEEecCCCchHHHHHHHHHHh---CCCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~ 104 (464)
..|.+.|+||+|||+|+.+|+..+ |..+..+++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 459999999999999999999876 555444443
No 404
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.00 E-value=0.051 Score=47.87 Aligned_cols=23 Identities=26% Similarity=0.236 Sum_probs=20.7
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999764
No 405
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.99 E-value=0.051 Score=48.47 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=20.6
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|||||+|..++...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 56999999999999999988864
No 406
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=92.99 E-value=0.06 Score=56.87 Aligned_cols=22 Identities=18% Similarity=0.101 Sum_probs=19.9
Q ss_pred cceEEEecCCCchHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAK 93 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~ 93 (464)
+-++++||+|+|||+||+.++.
T Consensus 148 ~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 148 GWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEcCCCCCHHHHHHHHHh
Confidence 4599999999999999999974
No 407
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.97 E-value=0.053 Score=49.03 Aligned_cols=22 Identities=27% Similarity=0.181 Sum_probs=19.5
Q ss_pred cceEEEecCCCchHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAK 93 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~ 93 (464)
..|+++|++|+|||+|.++++.
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4599999999999999998863
No 408
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.94 E-value=0.055 Score=48.65 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=20.8
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-+|+++|++|+|||+|..++...
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 56999999999999999999864
No 409
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.93 E-value=0.053 Score=48.44 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=20.2
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|||||+|...++..
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999888754
No 410
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.93 E-value=0.057 Score=50.78 Aligned_cols=23 Identities=26% Similarity=0.157 Sum_probs=21.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHh
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
-|.|.||+|+||||+++.|++.+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999887
No 411
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.92 E-value=0.05 Score=47.96 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=20.5
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-+|+++|++|+|||+|..++...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56999999999999999998754
No 412
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.92 E-value=0.057 Score=47.87 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=20.6
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 46999999999999999999863
No 413
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.91 E-value=0.042 Score=54.16 Aligned_cols=23 Identities=13% Similarity=-0.035 Sum_probs=20.9
Q ss_pred ceEEEecCCCchHHHHHHHHHHh
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
-+.+.||+|+|||||.++|+..+
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999999875
No 414
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.88 E-value=0.043 Score=48.00 Aligned_cols=21 Identities=43% Similarity=0.382 Sum_probs=18.8
Q ss_pred cceEEEecCCCchHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLA 92 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA 92 (464)
-.|+++|++|+|||+|..++.
T Consensus 19 ~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 469999999999999998775
No 415
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.88 E-value=0.057 Score=48.55 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=20.4
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999998764
No 416
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.87 E-value=0.059 Score=53.84 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=21.5
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
..+.+.||||+||||+..+|+..+
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 458899999999999999999765
No 417
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.87 E-value=0.084 Score=54.94 Aligned_cols=36 Identities=22% Similarity=0.015 Sum_probs=28.8
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHh---CCCeEEeecC
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEAT 105 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~s 105 (464)
.|..+++.||+|+||||++..||..+ |..+..+++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 45678999999999999999999776 5556666653
No 418
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.87 E-value=0.23 Score=58.46 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=28.9
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCC--eEEeecCce
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAP--FIKIEATKF 107 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~--~i~ld~s~~ 107 (464)
..+-++||+|+|||||++.|.+.+... -|.+|+-++
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di 1143 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEI 1143 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEET
T ss_pred CEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEh
Confidence 458899999999999999999987533 566776554
No 419
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.84 E-value=0.056 Score=48.89 Aligned_cols=24 Identities=25% Similarity=0.083 Sum_probs=21.1
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
..|+++|++|+|||+|..++....
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999998653
No 420
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.84 E-value=0.052 Score=48.58 Aligned_cols=23 Identities=30% Similarity=0.209 Sum_probs=20.2
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-+|+++|++|+|||+|..++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999998753
No 421
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.83 E-value=0.055 Score=48.16 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=20.6
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-+|+++|++|+|||+|..++...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999998864
No 422
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.81 E-value=0.056 Score=48.11 Aligned_cols=23 Identities=30% Similarity=0.180 Sum_probs=20.8
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999998864
No 423
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.80 E-value=0.056 Score=48.30 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=20.6
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45999999999999999999764
No 424
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.80 E-value=0.057 Score=47.86 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.5
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-+|+++|++|+|||+|..++...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999998753
No 425
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.80 E-value=0.096 Score=49.09 Aligned_cols=32 Identities=16% Similarity=0.131 Sum_probs=25.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHh--CCCeEEee
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS--NAPFIKIE 103 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l--~~~~i~ld 103 (464)
..+++.|.+|+||||++..||..+ |.....+|
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 558999999999999999999776 54554444
No 426
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.80 E-value=0.04 Score=49.82 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=19.4
Q ss_pred cceEEEecCCCchHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAK 93 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~ 93 (464)
-.|+++|++|||||+|.++++.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999998753
No 427
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.80 E-value=0.061 Score=47.70 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.2
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
..|+++|++|+|||+|.++++..
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999988754
No 428
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.79 E-value=0.056 Score=48.55 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.7
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56999999999999999998754
No 429
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=92.78 E-value=0.039 Score=57.26 Aligned_cols=61 Identities=11% Similarity=0.043 Sum_probs=46.2
Q ss_pred hhhcchhHHHHhhhhhcccccccCCCCCCccccccCCCcceEEEecCCCchHHHHHHHHHHhC--CCeEEeecC
Q psy2406 34 KFGIRKAILKASVYIDAPNTRANNISRNNPVIRENNVILDMVIKVLLLVGKTEIARRLAKLSN--APFIKIEAT 105 (464)
Q Consensus 34 ~~~igq~~~~~~v~~~~~~~r~~~~~~~~~~~~~~~~p~~iLl~GP~G~GKT~LAr~lA~~l~--~~~i~ld~s 105 (464)
.-++||..+...+...+...+.+. ..|+++||+||||||||++|+++|+.++ ++|+.++++
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~-----------~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~ 99 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKK-----------MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGS 99 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC-----------CTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGG
T ss_pred hhccCHHHHHHHHHHHHHHHHhCC-----------CCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHH
Confidence 346888888776655443333332 1347899999999999999999999999 889888764
No 430
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.77 E-value=0.06 Score=49.21 Aligned_cols=23 Identities=26% Similarity=0.167 Sum_probs=20.8
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|||||+|..+++..
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 431
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.69 E-value=0.086 Score=54.93 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=23.1
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNA 97 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~ 97 (464)
..+.++||+|||||||.+.||.....
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCC
Confidence 34889999999999999999999754
No 432
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.67 E-value=0.046 Score=48.16 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.3
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998753
No 433
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.66 E-value=0.063 Score=48.98 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.7
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999998864
No 434
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=92.63 E-value=0.12 Score=57.88 Aligned_cols=34 Identities=12% Similarity=-0.052 Sum_probs=23.6
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHh---CCCeEEee
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIE 103 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld 103 (464)
.|+++|+.||||+|||..+-..+-.. |...+.+.
T Consensus 388 ~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvla 424 (780)
T 1gm5_A 388 KPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMV 424 (780)
T ss_dssp SCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEEC
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 34689999999999998876555332 54444443
No 435
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.61 E-value=0.066 Score=47.55 Aligned_cols=23 Identities=30% Similarity=0.105 Sum_probs=20.8
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999865
No 436
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=92.61 E-value=0.11 Score=54.91 Aligned_cols=23 Identities=17% Similarity=0.070 Sum_probs=20.9
Q ss_pred CcceEEEecCCCchHHHHHHHHH
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAK 93 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~ 93 (464)
++.+.++|++|+|||+||+.+++
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999999996
No 437
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.61 E-value=0.029 Score=55.87 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=25.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCC--eEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAP--FIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~--~i~ld~ 104 (464)
..+.++||+|+|||||.++|+..+... -+.+++
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G 115 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDG 115 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETT
T ss_pred CEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECC
Confidence 458899999999999999999887432 344444
No 438
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.60 E-value=0.054 Score=55.41 Aligned_cols=24 Identities=17% Similarity=0.036 Sum_probs=21.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHhC
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
-+.++||+|+|||||.|+|+....
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHhcCCC
Confidence 378999999999999999998763
No 439
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.54 E-value=0.064 Score=48.17 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=20.4
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..+++..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998853
No 440
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.54 E-value=0.058 Score=53.05 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=19.6
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++||+|+|||||.++|+..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 34899999999999999998753
No 441
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.52 E-value=0.061 Score=51.50 Aligned_cols=23 Identities=30% Similarity=0.199 Sum_probs=20.2
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
.+|.|.|+||||||+|..+|+..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999643
No 442
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.51 E-value=0.066 Score=47.36 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=19.8
Q ss_pred cceEEEecCCCchHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAK 93 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~ 93 (464)
-.|+++|++|+|||+|..++..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4599999999999999999874
No 443
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.48 E-value=0.099 Score=52.77 Aligned_cols=26 Identities=19% Similarity=0.064 Sum_probs=23.2
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCC
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNA 97 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~ 97 (464)
..+.|+||+|+|||||.++|+.....
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34899999999999999999999754
No 444
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=92.47 E-value=0.09 Score=53.74 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=27.5
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHh---CCCeEEeec
Q psy2406 70 VILDMVIKVLLLVGKTEIARRLAKLS---NAPFIKIEA 104 (464)
Q Consensus 70 ~p~~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~ 104 (464)
...+++++||||+|||++.+.+...+ |.+++.+|.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dp 89 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 89 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 34789999999999999987776543 667776664
No 445
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.46 E-value=0.067 Score=50.85 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=24.3
Q ss_pred ceEEEecCCCchHHHHHHHHHHh---CCCeEEee
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS---NAPFIKIE 103 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld 103 (464)
-++++||+|+|||+++..++..+ |...+.+.
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 37888999999999999998776 44555443
No 446
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.45 E-value=0.066 Score=48.25 Aligned_cols=22 Identities=9% Similarity=0.158 Sum_probs=19.9
Q ss_pred cceEEEecCCCchHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAK 93 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~ 93 (464)
-+|+++|++|+|||+|..++..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4699999999999999999874
No 447
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.34 E-value=0.039 Score=48.34 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=9.9
Q ss_pred cceEEEecCCCchHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAK 93 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~ 93 (464)
-.|+++|++|+|||+|..++..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4599999999999999998874
No 448
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.30 E-value=0.16 Score=52.81 Aligned_cols=31 Identities=23% Similarity=0.074 Sum_probs=24.6
Q ss_pred ceEEEecCCCchHHHHHHHHHHh---CCCeEEee
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS---NAPFIKIE 103 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld 103 (464)
-+++.|+||+|||+||-.+|... |.+++.++
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 48999999999999999998665 55555444
No 449
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.29 E-value=0.066 Score=49.96 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=20.5
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
..|+|+|++|+|||+|..+|...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 56999999999999999998753
No 450
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.29 E-value=0.068 Score=47.73 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=20.0
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56999999999999999998743
No 451
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.28 E-value=0.076 Score=47.81 Aligned_cols=23 Identities=26% Similarity=0.043 Sum_probs=20.8
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-+|+++|++|+|||+|..+++..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56999999999999999998864
No 452
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.28 E-value=0.069 Score=53.46 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=21.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
..+.+.||||+|||||.++|+..+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 348899999999999999999765
No 453
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.20 E-value=0.06 Score=47.75 Aligned_cols=23 Identities=26% Similarity=0.211 Sum_probs=20.5
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 56999999999999999988754
No 454
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.15 E-value=0.072 Score=47.78 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=19.4
Q ss_pred cceEEEecCCCchHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAK 93 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~ 93 (464)
-.|+++|++|+|||+|..++..
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 4599999999999999998853
No 455
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.15 E-value=0.16 Score=53.08 Aligned_cols=45 Identities=13% Similarity=-0.007 Sum_probs=31.1
Q ss_pred ceEEEecCCCchHHHHHHHHHHh----CCCeEEeecCceeeccccccChHHHHHHHHH
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS----NAPFIKIEATKFTEVGYVGRDVDTIIRDLID 126 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l----~~~~i~ld~s~~~~~gyvG~d~~~~i~~l~~ 126 (464)
-+++.||||+|||+||..+|... |.+++.++. ..+.+.+...++.
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~---------E~s~~~l~~r~~~ 292 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML---------EESVEETAEDLIG 292 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES---------SSCHHHHHHHHHH
T ss_pred EEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec---------cCCHHHHHHHHHH
Confidence 48899999999999999999765 445554443 1234556655543
No 456
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.14 E-value=0.12 Score=54.52 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=24.1
Q ss_pred cceEEEecCCCchHHHHHH--HHHHh--CCCeEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARR--LAKLS--NAPFIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~--lA~~l--~~~~i~ld~ 104 (464)
..++++||+|||||||+++ ++... +..-+.++.
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 3489999999999999999 44443 444555544
No 457
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.12 E-value=0.081 Score=47.79 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.5
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 56999999999999999998753
No 458
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.12 E-value=0.076 Score=48.47 Aligned_cols=22 Identities=23% Similarity=0.117 Sum_probs=20.0
Q ss_pred cceEEEecCCCchHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAK 93 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~ 93 (464)
-.|+++|++|+|||+|..++..
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 5699999999999999999874
No 459
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.09 E-value=0.082 Score=47.70 Aligned_cols=23 Identities=22% Similarity=-0.031 Sum_probs=20.3
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999998853
No 460
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.00 E-value=0.07 Score=47.28 Aligned_cols=22 Identities=32% Similarity=0.309 Sum_probs=19.7
Q ss_pred cceEEEecCCCchHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAK 93 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~ 93 (464)
..|+++|++|||||+|..++..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 6799999999999999998764
No 461
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.97 E-value=0.086 Score=47.74 Aligned_cols=23 Identities=22% Similarity=0.056 Sum_probs=20.4
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-+|+++|++|+|||+|..++...
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999998853
No 462
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.96 E-value=0.098 Score=52.41 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=27.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCce
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKF 107 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~ 107 (464)
.+++|.||+|+|||++|..|.+. |..++.=|...+
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~~~i 179 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR-GHRLVADDNVEI 179 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc-CCceecCCeEEE
Confidence 67999999999999999999875 666664444433
No 463
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.90 E-value=0.078 Score=48.02 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=20.4
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999998853
No 464
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.87 E-value=0.077 Score=47.41 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=19.7
Q ss_pred cceEEEecCCCchHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAK 93 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~ 93 (464)
-+|+++|++|+|||+|..++..
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999998864
No 465
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.78 E-value=0.071 Score=55.57 Aligned_cols=21 Identities=14% Similarity=0.090 Sum_probs=19.7
Q ss_pred eEEEecCCCchHHHHHHHHHH
Q psy2406 74 MVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~ 94 (464)
+.|+||+|+|||||.++|+..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999976
No 466
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.75 E-value=0.09 Score=47.31 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=20.1
Q ss_pred ceEEEecCCCchHHHHHHHHHH
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
.|+++|+||||||+|..+++..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999998864
No 467
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.70 E-value=0.089 Score=55.62 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=20.6
Q ss_pred ceEEEecCCCchHHHHHHHHHHh
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.+++.||+|+|||+|++++|...
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999764
No 468
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.67 E-value=0.14 Score=47.56 Aligned_cols=29 Identities=14% Similarity=0.041 Sum_probs=24.0
Q ss_pred eEEEecCCCchHHHHHHHHHHh--CCCeEEe
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLS--NAPFIKI 102 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l--~~~~i~l 102 (464)
|.|-|+.||||||+++.|++.+ |.+++.+
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 6788999999999999999988 4455543
No 469
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.60 E-value=0.084 Score=51.92 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=20.5
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.-+.|.||+|+|||||.++|+ ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 458899999999999999999 54
No 470
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.60 E-value=0.1 Score=46.72 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=19.8
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|||||+|.+.+...
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 56999999999999999876653
No 471
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.56 E-value=0.076 Score=46.91 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=18.8
Q ss_pred cceEEEecCCCchHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLA 92 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA 92 (464)
-+|+++|++|+|||+|..++.
T Consensus 23 ~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 459999999999999999874
No 472
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.47 E-value=0.083 Score=48.73 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=19.7
Q ss_pred cceEEEecCCCchHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAK 93 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~ 93 (464)
..|+++|++|+|||+|..+++.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999998864
No 473
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=91.41 E-value=0.099 Score=47.93 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=20.5
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..+++..
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45999999999999999998864
No 474
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.41 E-value=0.073 Score=52.24 Aligned_cols=24 Identities=17% Similarity=0.011 Sum_probs=21.2
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.-+.|.||+|+|||||.++|+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 457899999999999999998764
No 475
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.36 E-value=0.091 Score=53.52 Aligned_cols=24 Identities=21% Similarity=0.099 Sum_probs=21.3
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
..+.|+||+|+|||||.++|+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 458999999999999999999654
No 476
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.28 E-value=0.11 Score=47.67 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.7
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|||||+|..++...
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999998864
No 477
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=91.28 E-value=0.12 Score=46.49 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=20.5
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
+++++.+|||+|||.++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999988877653
No 478
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.23 E-value=0.11 Score=45.75 Aligned_cols=25 Identities=12% Similarity=-0.225 Sum_probs=21.8
Q ss_pred CcceEEEecCCCchHHHHHHHHHHh
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
|+-.+++||.|+|||++..+|+-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4558999999999999999998765
No 479
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=91.17 E-value=0.1 Score=56.34 Aligned_cols=24 Identities=25% Similarity=-0.017 Sum_probs=20.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
+.+++.||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 569999999999999888777554
No 480
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.14 E-value=0.11 Score=48.59 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=17.4
Q ss_pred cceEEEecCCCchHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLA 92 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA 92 (464)
..+++.||||||||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 569999999999998766554
No 481
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=91.07 E-value=0.1 Score=50.25 Aligned_cols=26 Identities=15% Similarity=0.031 Sum_probs=23.9
Q ss_pred eEEEecCCCchHHHHHHHHHHhCCCe
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSNAPF 99 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~~~~ 99 (464)
|.|.|++|||||++|+.|++.+|++.
T Consensus 4 i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 4 IFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 78999999999999999999888765
No 482
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.07 E-value=0.21 Score=46.02 Aligned_cols=31 Identities=16% Similarity=0.089 Sum_probs=25.9
Q ss_pred eEEEecCCCchHHHHHHHHHHh---CCCeEEeec
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLS---NAPFIKIEA 104 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l---~~~~i~ld~ 104 (464)
|.|-|+-||||||.++.|++.+ |.+++.+..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre 36 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 6788999999999999999887 677766544
No 483
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=91.03 E-value=0.049 Score=48.53 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=5.1
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
-.|+++|++|+|||+|..++...
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999988754
No 484
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=91.01 E-value=0.11 Score=56.29 Aligned_cols=24 Identities=17% Similarity=-0.078 Sum_probs=19.5
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
...++.||||||||+++..++..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999998877776554
No 485
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=90.93 E-value=0.12 Score=48.65 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=20.5
Q ss_pred cceEEEecCCCchHHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
.+|+|+|+||+|||+|..+|...
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56999999999999999998753
No 486
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=90.93 E-value=0.16 Score=50.91 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=28.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCCeEEeecCcee
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAPFIKIEATKFT 108 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~~i~ld~s~~~ 108 (464)
.++||.||+|+|||++|-.|.+ -|..++.=|...+.
T Consensus 148 ~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v~i~ 183 (312)
T 1knx_A 148 VGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAIEIY 183 (312)
T ss_dssp EEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEEEEE
Confidence 6799999999999999998865 57776665555543
No 487
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=90.87 E-value=0.1 Score=50.06 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=19.7
Q ss_pred cceEEEecCCCchHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAK 93 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~ 93 (464)
..|+|+|+||||||+|..+|+.
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 4599999999999999999864
No 488
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.84 E-value=0.12 Score=54.77 Aligned_cols=24 Identities=13% Similarity=-0.058 Sum_probs=21.7
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.-+.|+||+|||||||.++|+..+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 358899999999999999999876
No 489
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.79 E-value=0.093 Score=54.42 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=20.5
Q ss_pred ceEEEecCCCchHHHHHHHHHHh
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.|+|+||+|+|||||.++|+...
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999998653
No 490
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=90.63 E-value=0.13 Score=49.23 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=19.6
Q ss_pred ceEEEecCCCchHHHHHHHHHH
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
.|+|.|+||||||+|..+|...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5999999999999999998643
No 491
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=90.50 E-value=0.11 Score=52.64 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=19.7
Q ss_pred CcceEEEecCCCchHHHHHHHH
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLA 92 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA 92 (464)
+..+||.|++|+||||++|.+.
T Consensus 33 ~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 33 LVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCcHHHHHHHHH
Confidence 3569999999999999999984
No 492
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.35 E-value=0.14 Score=53.13 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=21.9
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
..++++||+|||||+|++.||+..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH
Confidence 569999999999999999999875
No 493
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=90.34 E-value=0.14 Score=51.36 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=21.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
..+.|.||||+|||||..+|+..+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 349999999999999999999764
No 494
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=90.33 E-value=0.051 Score=51.77 Aligned_cols=23 Identities=9% Similarity=-0.112 Sum_probs=20.9
Q ss_pred eEEEecCCCchHHHHHHHHHHhC
Q psy2406 74 MVIKVLLLVGKTEIARRLAKLSN 96 (464)
Q Consensus 74 iLl~GP~G~GKT~LAr~lA~~l~ 96 (464)
+.++||+|||||+|.++|+..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 67889999999999999998873
No 495
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.20 E-value=0.14 Score=53.06 Aligned_cols=24 Identities=17% Similarity=0.219 Sum_probs=21.3
Q ss_pred cceEEEecCCCchHHHHHHHHHHh
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
..+.|.||+|+|||||.++|+...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 358999999999999999999843
No 496
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.20 E-value=0.13 Score=54.90 Aligned_cols=23 Identities=22% Similarity=-0.039 Sum_probs=21.0
Q ss_pred ceEEEecCCCchHHHHHHHHHHh
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKLS 95 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~l 95 (464)
.+.|+||+|+|||||.|+|+..+
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999865
No 497
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.03 E-value=0.15 Score=47.33 Aligned_cols=22 Identities=27% Similarity=0.218 Sum_probs=19.6
Q ss_pred cceEEEecCCCchHHHHHHHHH
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAK 93 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~ 93 (464)
-.|+++|+||||||+|..+++.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4599999999999999998874
No 498
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=89.92 E-value=0.16 Score=46.88 Aligned_cols=28 Identities=14% Similarity=-0.169 Sum_probs=23.9
Q ss_pred CcceEEEecCCCchHHHHHHHHHHhCCC
Q psy2406 71 ILDMVIKVLLLVGKTEIARRLAKLSNAP 98 (464)
Q Consensus 71 p~~iLl~GP~G~GKT~LAr~lA~~l~~~ 98 (464)
|+-.+++||.|+|||++..+|.-.++.+
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g~ 50 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYWP 50 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 4568999999999999999999877543
No 499
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=89.90 E-value=0.15 Score=49.43 Aligned_cols=22 Identities=14% Similarity=0.077 Sum_probs=19.9
Q ss_pred ceEEEecCCCchHHHHHHHHHH
Q psy2406 73 DMVIKVLLLVGKTEIARRLAKL 94 (464)
Q Consensus 73 ~iLl~GP~G~GKT~LAr~lA~~ 94 (464)
.|.|+|+||||||+|..+++..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5999999999999999999853
No 500
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.89 E-value=0.12 Score=55.46 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=25.8
Q ss_pred cceEEEecCCCchHHHHHHHHHHhCCC--eEEeec
Q psy2406 72 LDMVIKVLLLVGKTEIARRLAKLSNAP--FIKIEA 104 (464)
Q Consensus 72 ~~iLl~GP~G~GKT~LAr~lA~~l~~~--~i~ld~ 104 (464)
..+.+.||+|+|||||.+.|+..+... -+.+++
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g 404 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDG 404 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETT
T ss_pred CEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECC
Confidence 458899999999999999999887432 444544
Done!