RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2406
(464 letters)
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 334 bits (858), Expect = e-111
Identities = 226/387 (58%), Positives = 309/387 (79%), Gaps = 7/387 (1%)
Query: 82 VGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVR 141
VGKTEIARRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D ++K R+ EI K R
Sbjct: 60 VGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNR 119
Query: 142 TRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELN 201
RAED AE+R++D L+P + + N +++ STRQ FRK+LREG LD+KEIEI+++
Sbjct: 120 ARAEDVAEERILDALLPPAKNQ--WGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVS 177
Query: 202 D-TGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNED 260
+EIM+PPGMEEMT Q++++F +G+ + K RK+KI++A+K LID+EA KL+N +
Sbjct: 178 AGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPE 237
Query: 261 EIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI 320
E++QKAI+ VEQNGI+F+DEIDKI + + + D+SR GVQRDLLPLVEG+TV+TK+G+
Sbjct: 238 ELKQKAIDAVEQNGIVFIDEIDKICKKG-EYSGADVSREGVQRDLLPLVEGSTVSTKHGM 296
Query: 321 IKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYE 380
+KTDHILFIASGAF +A+PSDLIPELQGR PIRVEL +LS +DF RI+T + LT+QY+
Sbjct: 297 VKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYK 356
Query: 381 ALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN---SNNI 437
AL+ATEG+ I F D ++++AE A+ +NE+TENIGARRL+T ME+L++++SF+ N
Sbjct: 357 ALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQ 416
Query: 438 SLLVDADYVNSRLGDLSINEDLSRYVL 464
++ +DA YV LG++ NEDLSR++L
Sbjct: 417 TVNIDAAYVADALGEVVENEDLSRFIL 443
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 173 bits (438), Expect = 7e-51
Identities = 128/284 (45%), Positives = 188/284 (66%), Gaps = 12/284 (4%)
Query: 184 KRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIRE 243
+R++ E+ ++ ++ P G+ + T + + + K K E
Sbjct: 35 RRMQLQEPLRHEVTP------KNILMIGPTGVGK-TEIARRLAKLANAPFIKVEATKFTE 87
Query: 244 AIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQR 303
+ + ++ D I+ VEQNGI+F+DEIDKI + + + D+SR GVQR
Sbjct: 88 VGYVGKEVDSIIRDLTDSAGGA-IDAVEQNGIVFIDEIDKIC-KKGEYSGADVSREGVQR 145
Query: 304 DLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISD 363
DLLPLVEG+TV+TK+G++KTDHILFIASGAF +A+PSDLIPELQGR PIRVEL +LS +D
Sbjct: 146 DLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAAD 205
Query: 364 FTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 423
F RI+T + LT+QY+AL+ATEG+ I F D ++++AE A+ +NE+TENIGARRL+T M
Sbjct: 206 FERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVM 265
Query: 424 EKLLEEVSFN---SNNISLLVDADYVNSRLGDLSINEDLSRYVL 464
E+L++++SF+ N ++ +DA YV LG++ NEDLSR++L
Sbjct: 266 ERLMDKISFSASDMNGQTVNIDAAYVADALGEVVENEDLSRFIL 309
Score = 28.3 bits (62), Expect = 1.8
Identities = 47/85 (55%), Positives = 55/85 (64%), Gaps = 7/85 (8%)
Query: 82 VGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVR 141
VGKTEIARRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D + E N +
Sbjct: 60 VGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIV 119
Query: 142 TRAEDAAEDRVIDILVPSKEKSNLD 166
E ID + E S D
Sbjct: 120 FIDE-------IDKICKKGEYSGAD 137
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 132 bits (332), Expect = 4e-35
Identities = 82/339 (24%), Positives = 134/339 (39%), Gaps = 68/339 (20%)
Query: 175 NISTRQIFRKRLREGALDNKEIEIELNDTG----PHMEIMSPPGMEEMTAQIKTMFSVIG 230
N R F+++L++ + +E+E + ++ ++ P G T +T+ +
Sbjct: 35 NHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSG-KTLMAQTLAKHLD 93
Query: 231 NHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNV--EQNGIIFLDEIDKITTRS 288
+ + EA + D E + Q + NV Q GI+F+DEIDKI+ S
Sbjct: 94 IPIAISDATSLTEAGYVGEDVENIL----TRLLQASDWNVQKAQKGIVFIDEIDKISRLS 149
Query: 289 SQNNNT-DISRAGVQRDLLPLVEGTTVNT-----------KYGIIKTDHILFIASGA--- 333
+ T D+S GVQ+ LL +VEG+ VN + I T ILFI +GA
Sbjct: 150 ENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDG 209
Query: 334 ----------------------------------FHLAKPSDLIPELQGRFPIRVELDSL 359
H LIPEL GR P+ LDS+
Sbjct: 210 LAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSI 269
Query: 360 SISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRL 419
S+ I+ L KQY+ L + + + F ++ I+ +A++A GAR L
Sbjct: 270 SLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLAL-----ERKTGARGL 324
Query: 420 YTAMEKLLEEVSFN---SNNISLLVDADYVNSRLGDLSI 455
+E ++ F+ + + D V + L I
Sbjct: 325 RAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLII 363
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 59.7 bits (143), Expect = 4e-11
Identities = 21/178 (11%), Positives = 52/178 (29%), Gaps = 4/178 (2%)
Query: 82 VGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVR 141
GK+ + +LA + N +F G + D +++ R +
Sbjct: 18 SGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDYAVRH 77
Query: 142 TRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELN 201
+ + I + F + + + +
Sbjct: 78 SHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNT---EWVDDGLRS 134
Query: 202 DTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAI-KLLIDEEANKLLN 258
++++ + K + I + R +++ I K+L +EE ++L N
Sbjct: 135 LGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEKVLNEEEISELQN 192
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 315
Score = 35.5 bits (81), Expect = 0.011
Identities = 37/172 (21%), Positives = 52/172 (30%), Gaps = 29/172 (16%)
Query: 272 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHIL---F 328
+I DEI+K N I G D G TV+ + +I L
Sbjct: 125 PYSVILFDEIEKA-HPDVFNILLQILDDGRLTD----SHGRTVDFRNTVIILTSNLGSPL 179
Query: 329 IASGAFHLAKPSDL------------IPELQGRFPIRVELDSLSISDFTRIMTSTNVCLT 376
I G + PE R V L+ +I+
Sbjct: 180 ILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVE----IQL 235
Query: 377 KQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 428
A LA + I +E + LAE Y GAR L +++ LE
Sbjct: 236 SYLRARLAEKRISLELTEAAKDFLAERGY-----DPVFGARPLRRVIQRELE 282
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 35.2 bits (81), Expect = 0.011
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 15/97 (15%)
Query: 275 IIFLDEIDKI-TTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGA 333
I+F+DEID + R S + R LL ++ G K I+ +A+
Sbjct: 104 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD--------GFEKDTAIVVMAATN 155
Query: 334 FHLAKPSDLIPEL--QGRFPIRVELDSLSISDFTRIM 368
P L P L GRF ++ +D+ + +I+
Sbjct: 156 R----PDILDPALLRPGRFDRQIAIDAPDVKGREQIL 188
Score = 29.4 bits (66), Expect = 0.77
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 83 GKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLID 126
GKT +AR +A + PFI + F E +VG +RDL +
Sbjct: 54 GKTHLARAVAGEARVPFITASGSDFVE-MFVG-VGAARVRDLFE 95
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 33.6 bits (77), Expect = 0.034
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 275 IIFLDEIDKI-TTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGA 333
IIF+DEID + R + R +L ++ G + I+ IA+
Sbjct: 107 IIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD--------GFEGNEGIIVIAAT- 157
Query: 334 FHLAKPSDLIPEL--QGRFPIRVELDSLSISDFTRIM 368
+P L P L GRF +V + + +I+
Sbjct: 158 ---NRPDVLDPALLRPGRFDRQVVVGLPDVRGREQIL 191
Score = 29.0 bits (65), Expect = 1.1
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 83 GKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLID 126
GKT +A+ +A + PF I + F E +VG + +RD+ +
Sbjct: 57 GKTLLAKAIAGEAKVPFFTISGSDFVE-MFVG-VGASRVRDMFE 98
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 32.7 bits (73), Expect = 0.049
Identities = 11/81 (13%), Positives = 21/81 (25%), Gaps = 5/81 (6%)
Query: 74 MVIKVLLLV-----GKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIS 128
M ++++L GK+ I R L + P++ E + +
Sbjct: 1 MTTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADG 60
Query: 129 IKQTREFEINKVRTRAEDAAE 149
AE
Sbjct: 61 GVSIGPEFRALEGAWAEGVVA 81
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 315
Score = 31.0 bits (69), Expect = 0.33
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 76 IKVLLLVG-----KTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDT 119
+ L G KTE+ +L+K ++ + +++ E V R +
Sbjct: 52 VGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGA 100
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 30.2 bits (67), Expect = 0.46
Identities = 22/223 (9%), Positives = 65/223 (29%), Gaps = 15/223 (6%)
Query: 77 KVLLLVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFE 136
++L+ K + ++A + F G ++++ ++ + ++E
Sbjct: 44 PRIMLLNKAD-------KADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEIL 96
Query: 137 INKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEI 196
K + R I L+ T N R + + G
Sbjct: 97 QEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLIN--------RLAKKNIAKTGDRPGITT 148
Query: 197 EIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKL 256
+ G +E++ PG+ + + + + I + + + +
Sbjct: 149 SQQWVKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEH 208
Query: 257 LNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRA 299
E ++ ++ + ++ D I + + +
Sbjct: 209 YPERLKERYGLDEIPEDIAELFDAIGEKRGCLMSGGLINYDKT 251
>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 185
Score = 28.8 bits (64), Expect = 0.93
Identities = 18/97 (18%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Query: 188 EGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKL 247
E A+ ++ + G + + PP EE + + + + R+A
Sbjct: 79 EKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANND 138
Query: 248 LIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKI 284
L +K ++EDE +KA +++ + + +ID++
Sbjct: 139 LKALLKDKEISEDED-RKAQEEIQKLTDVAVKKIDEV 174
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus
[TaxId: 274]}
Length = 212
Score = 28.1 bits (62), Expect = 2.0
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 181 IFRKRLREGALDNKEIEIELND 202
R RLRE A +++ D
Sbjct: 178 KIRARLREVAYLVAGLKLVFQD 199
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 27.6 bits (60), Expect = 2.0
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 82 VGKTEIARRLAKLSNAPFIKIE 103
GK+ I RRLAK + +
Sbjct: 12 SGKSTIGRRLAKALGVGLLDTD 33
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 27.8 bits (60), Expect = 2.4
Identities = 6/44 (13%), Positives = 12/44 (27%)
Query: 340 SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALL 383
IP F + + + + K++E L
Sbjct: 238 IGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFL 281
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 27.7 bits (61), Expect = 2.9
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 82 VGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLID 126
GKT +A L +L + + +G +D + +
Sbjct: 165 SGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQ-FLVVFE 208
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 27.2 bits (59), Expect = 3.0
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 73 DMVIKVLLLV-----GKTEIARRLAKLSNAPFIKIEATKFTE 109
D+ +LLL GK+ IA LA L P + +
Sbjct: 1 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWG 42
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 27.2 bits (59), Expect = 3.3
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 82 VGKTEIARRLAKLSNAPFIKIEATKF 107
G T + R LA+ F+ +
Sbjct: 13 CGMTTVGRELARALGYEFVDTDIFMQ 38
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 26.6 bits (57), Expect = 5.1
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 82 VGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRD 116
GK+ I R+LA+ N F + G
Sbjct: 13 AGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGW 47
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 26.4 bits (57), Expect = 6.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 82 VGKTEIARRLAKLSNAPFI 100
GK+ +AR LAK + F+
Sbjct: 11 SGKSTLARALAKDLDLVFL 29
>d1qb7a_ c.61.1.1 (A:) Adenine PRTase {Leishmania donovani [TaxId:
5661]}
Length = 236
Score = 26.2 bits (57), Expect = 7.6
Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 38/235 (16%)
Query: 247 LLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLL 306
LL D A L + + + +N F D +++ + + + +A
Sbjct: 11 LLDDSHALSQLLKKSYRWYSPVFSPRNVPRFAD----VSSITE---SPETLKA------- 56
Query: 307 PLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRV----ELDSLSIS 362
+ + + HIL + F + E+ + L S
Sbjct: 57 -IRDFLVQRYRAMSPAPTHILGFDARGFLFGPMIAVELEIPFVLMRKADKNAGLLIRSEP 115
Query: 363 DFTRIMTSTNVCLTKQY------------EALLATEGIKIEFVDDGIQRLAEIA--YCIN 408
+ +T +Y + +LAT G + + A + I
Sbjct: 116 YEKEYKEAAPEVMTIRYGSIGKGSRVVLIDDVLATGGTALSGLQLVEASDAVVVEMVSIL 175
Query: 409 ERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGDLSINEDLSRYV 463
A ++++ +++ F S L+ D + S N R +
Sbjct: 176 SIPFLKAAEKIHSTANSRYKDIKFIS-----LLSDDALTEENCGDSKNYTGPRVL 225
>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia
coli [TaxId: 562]}
Length = 185
Score = 26.1 bits (57), Expect = 7.7
Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Query: 188 EGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKL 247
E A+ ++ + N G + + PP EE + + + + R+A
Sbjct: 79 EKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDK 138
Query: 248 LIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKI 284
+ +K ++ED+ +++ ++V++ + +I+
Sbjct: 139 VKALLKDKEISEDD-DRRSQDDVQKLTDAAIKKIEAA 174
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId:
562]}
Length = 219
Score = 26.1 bits (57), Expect = 7.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 181 IFRKRLREGALDNKEIEIELND 202
I KRLRE + + + I L D
Sbjct: 185 ILAKRLRELSFLDSGVSIRLRD 206
>d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis
protein SpsE, N-terminal domain {Bacillus subtilis
[TaxId: 1423]}
Length = 295
Score = 26.1 bits (56), Expect = 9.5
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 210 MSPPGMEEMTAQIKTMFSVIGNHRKK-------TRKIKIREAIK 246
++P ++EM I+ + + K K AI+
Sbjct: 251 LNPDELKEMVDGIRKTEAELKQGITKPVSEKLLGSSYKTTTAIE 294
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.363
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,651,216
Number of extensions: 79500
Number of successful extensions: 315
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 49
Length of query: 464
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 376
Effective length of database: 1,199,356
Effective search space: 450957856
Effective search space used: 450957856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.2 bits)