BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2407
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V4X|A Chain A, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|B Chain B, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|C Chain C, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|D Chain D, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
Length = 388
Score = 120 bits (301), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 127/236 (53%), Gaps = 18/236 (7%)
Query: 2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAAA 60
+ +GI+ I+ + +ID+ LA+ R +D +F + Q Q +V+ +D V+FA NAA
Sbjct: 6 MTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAE 65
Query: 61 PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
+ L+ DK +I+++I +ES ID K+ + +H +G+ R FE+K+ACY TAG
Sbjct: 66 AI---LTKEDKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKEACYGATAG 122
Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
LQ+A N + + P K LV+A DI+++ + EP+ GAGAVAML+S +
Sbjct: 123 LQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGG----------EPTQGAGAVAMLVSSE 170
Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKRV 235
P I N + ++ D RP + LS +Y+ AQ + E+KKR
Sbjct: 171 PRILALK-EDNVMLTQDIYDFWRPTGHPYPMVDGPLSNETYIQSFAQVWDEHKKRT 225
>pdb|1X9E|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis
pdb|1X9E|B Chain B, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis
Length = 383
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 127/236 (53%), Gaps = 18/236 (7%)
Query: 2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAAA 60
+ +GI+ I+ + +ID+ LA+ R +D +F + Q Q +V+ +D V+FA NAA
Sbjct: 1 MTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAE 60
Query: 61 PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
+ L+ DK +I+++I +ES ID K+ + +H +G+ R FE+K+ACY TAG
Sbjct: 61 AI---LTKEDKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKEACYGATAG 117
Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
LQ+A N + + P K LV+A DI+++ + EP+ GAGAVAML++ +
Sbjct: 118 LQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGG----------EPTQGAGAVAMLVASE 165
Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKRV 235
P I N + ++ D RP + LS +Y+ AQ + E+KKR
Sbjct: 166 PRILALK-EDNVMLTQDIYDFWRPTGHPYPMVDGPLSNETYIQSFAQVWDEHKKRT 220
>pdb|2HDB|A Chain A, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
pdb|2HDB|B Chain B, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
Length = 383
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 126/236 (53%), Gaps = 18/236 (7%)
Query: 2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAAA 60
+ +GI+ I+ + +ID+ LA+ R +D +F + Q Q +V+ +D V+FA NAA
Sbjct: 1 MTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAE 60
Query: 61 PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
+ L+ DK +I+++I +ES ID K+ + +H +G+ R FE+K+ CY TAG
Sbjct: 61 AI---LTKEDKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKEGCYGATAG 117
Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
LQ+A N + + P K LV+A DI+++ + EP+ GAGAVAML++ +
Sbjct: 118 LQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGG----------EPTQGAGAVAMLVASE 165
Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKRV 235
P I N + ++ D RP + LS +Y+ AQ + E+KKR
Sbjct: 166 PRILALK-EDNVMLTQDIYDFWRPTGHPYPMVDGPLSNETYIQSFAQVWDEHKKRT 220
>pdb|3V4N|A Chain A, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|B Chain B, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|C Chain C, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|D Chain D, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
Length = 388
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 126/236 (53%), Gaps = 18/236 (7%)
Query: 2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAAA 60
+ +GI+ I+ + +ID+ LA+ R +D +F + Q Q +V+ +D V+FA NAA
Sbjct: 6 MTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAE 65
Query: 61 PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
+ L+ DK +I+++I +ES ID K+ + +H +G+ R FE+K+A Y TAG
Sbjct: 66 AI---LTKEDKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKEAXYGATAG 122
Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
LQ+A N + + P K LV+A DI+++ + EP+ GAGAVAML+S +
Sbjct: 123 LQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGG----------EPTQGAGAVAMLVSSE 170
Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKRV 235
P I N + ++ D RP + LS +Y+ AQ + E+KKR
Sbjct: 171 PRILALK-EDNVMLTQDIYDFWRPTGHPYPMVDGPLSNETYIQSFAQVWDEHKKRT 225
>pdb|1YSL|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis With Acetoacetyl-Coa Ligand
Length = 402
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 126/236 (53%), Gaps = 18/236 (7%)
Query: 2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAAA 60
+ +GI+ I+ + +ID+ LA+ R +D +F + Q Q +V+ +D V+FA NAA
Sbjct: 20 MTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAE 79
Query: 61 PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
+ L+ DK +I+++I +ES ID K+ + +H +G+ R FE+K+A Y TAG
Sbjct: 80 AI---LTKEDKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKEAXYGATAG 136
Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
LQ+A N + + P K LV+A DI+++ + EP+ GAGAVAML++ +
Sbjct: 137 LQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGG----------EPTQGAGAVAMLVASE 184
Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKRV 235
P I N + ++ D RP + LS +Y+ AQ + E+KKR
Sbjct: 185 PRILALK-EDNVMLTQDIYDFWRPTGHPYPMVDGPLSNETYIQSFAQVWDEHKKRT 239
>pdb|1YSL|B Chain B, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis With Acetoacetyl-Coa Ligand
Length = 384
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 127/237 (53%), Gaps = 19/237 (8%)
Query: 2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAAA 60
+ +GI+ I+ + +ID+ LA+ R +D +F + Q Q +V+ +D V+FA NAA
Sbjct: 1 MTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAE 60
Query: 61 PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQAC-YSCTA 119
+ L+ DK +I+++I +ES ID K+ + +H +G+ R FE+K+AC Y TA
Sbjct: 61 AI---LTKEDKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKEACXYGATA 117
Query: 120 GLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISD 179
GLQ+A N + + P K LV+A DI+++ + EP+ GAGAVAML++
Sbjct: 118 GLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGG----------EPTQGAGAVAMLVAS 165
Query: 180 KPEIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKRV 235
+P I N + ++ D RP + LS +Y+ AQ + E+KKR
Sbjct: 166 EPRILALK-EDNVMLTQDIYDFWRPTGHPYPMVDGPLSNETYIQSFAQVWDEHKKRT 221
>pdb|1XPK|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 128/235 (54%), Gaps = 18/235 (7%)
Query: 2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAAA 60
+ +GI+ IN Y ++D+ +LA+ R++D +F + Q + +VS +D VS NAA
Sbjct: 1 MTIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAK 60
Query: 61 PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
+I ++ DK I ++I +ES +D K+ + IH+ LG+ R FE+K+ACY+ T
Sbjct: 61 DII---TDEDKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEMKEACYAATPA 117
Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
+Q+A +++ ++ P K LVIATD +R+ + EP+ GAGAVAM+I+
Sbjct: 118 IQLAKDYLATR--PNEKVLVIATDTARYGLNSGG----------EPTQGAGAVAMVIAHN 165
Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKR 234
P I + + Y+ +V D RP + LS +Y+ QS+ EY KR
Sbjct: 166 PSILALNEDAVA-YTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKR 219
>pdb|1TVZ|A Chain A, Crystal Structure Of 3-hydroxy-3-methylglutaryl-coenzyme A
Synthase From Staphylococcus Aureus
pdb|1TXT|A Chain A, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|B Chain B, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|C Chain C, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|D Chain D, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
Length = 388
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 127/235 (54%), Gaps = 18/235 (7%)
Query: 2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAAA 60
+ +GI+ IN Y ++D+ +LA+ R++D +F + Q + +VS +D VS NAA
Sbjct: 1 MTIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAK 60
Query: 61 PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
+I ++ DK I ++I +ES +D K+ + IH+ LG+ R FE+K+A Y+ T
Sbjct: 61 DII---TDEDKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEMKEAXYAATPA 117
Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
+Q+A +++ ++ P K LVIATD +R+ + EP+ GAGAVAM+I+
Sbjct: 118 IQLAKDYLATR--PNEKVLVIATDTARYGLNSGG----------EPTQGAGAVAMVIAHN 165
Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKR 234
P I + + Y+ +V D RP + LS +Y+ QS+ EY KR
Sbjct: 166 PSILALNEDAVA-YTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKR 219
>pdb|1XPK|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 127/235 (54%), Gaps = 18/235 (7%)
Query: 2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAAA 60
+ +GI+ IN Y ++D+ +LA+ R++D +F + Q + +VS +D VS NAA
Sbjct: 1 MTIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAK 60
Query: 61 PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
+I ++ DK I ++I +ES +D K+ + IH+ LG+ R FE+K+A Y+ T
Sbjct: 61 DII---TDEDKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEMKEAXYAATPA 117
Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
+Q+A +++ ++ P K LVIATD +R+ + EP+ GAGAVAM+I+
Sbjct: 118 IQLAKDYLATR--PNEKVLVIATDTARYGLNSGG----------EPTQGAGAVAMVIAHN 165
Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKR 234
P I + + Y+ +V D RP + LS +Y+ QS+ EY KR
Sbjct: 166 PSILALNEDAVA-YTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKR 219
>pdb|1XPK|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
pdb|1XPK|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 127/234 (54%), Gaps = 19/234 (8%)
Query: 4 VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAAAPL 62
+GI+ IN Y ++D+ +LA+ R++D +F + Q + +VS +D VS NAA +
Sbjct: 2 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 61
Query: 63 IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQA-CYSCTAGL 121
I ++ DK I ++I +ES +D K+ + IH+ LG+ R FE+K+A CY+ T +
Sbjct: 62 I---TDEDKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEMKEAXCYAATPAI 118
Query: 122 QMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP 181
Q+A +++ ++ P K LVIATD +R+ + EP+ GAGAVAM+I+ P
Sbjct: 119 QLAKDYLATR--PNEKVLVIATDTARYGLNSGG----------EPTQGAGAVAMVIAHNP 166
Query: 182 EIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKR 234
I + + Y+ +V D RP + LS +Y+ QS+ EY KR
Sbjct: 167 SILALNEDAVA-YTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKR 219
>pdb|1XPL|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPM|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
Length = 390
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 127/234 (54%), Gaps = 19/234 (8%)
Query: 4 VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAAAPL 62
+GI+ IN Y ++D+ +LA+ R++D +F + Q + +VS +D VS NAA +
Sbjct: 2 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 61
Query: 63 IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQA-CYSCTAGL 121
I ++ DK I ++I +ES +D K+ + IH+ LG+ R FE+K+A CY+ T +
Sbjct: 62 I---TDEDKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEMKEAXCYAATPAI 118
Query: 122 QMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP 181
Q+A +++ ++ P K LVIATD +R+ + EP+ GAGAVAM+I+ P
Sbjct: 119 QLAKDYLATR--PNEKVLVIATDTARYGLNSGG----------EPTQGAGAVAMVIAHNP 166
Query: 182 EIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKR 234
I + + Y+ +V D RP + LS +Y+ QS+ EY KR
Sbjct: 167 SILALNEDAVA-YTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKR 219
>pdb|3LEH|A Chain A, The Crystal Structure Of Smu.943c From Streptococcus
Mutans Ua159
Length = 425
Score = 97.4 bits (241), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 119/235 (50%), Gaps = 18/235 (7%)
Query: 2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRF-ENLLMQQKSVSLPYEDPVSFAINAAA 60
+++GI+ I +++ +LA+ R D +F + LL+ S++ +D V+ A +A
Sbjct: 35 MRIGIDKIGFTSSQYVLNMKDLAEARGEDPQKFSKGLLLNALSIAPITDDVVTLAAGSAN 94
Query: 61 PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
+ L+ DK I+++I +ES +D K+ + Y+H LG+ R FE+K+ACYS TA
Sbjct: 95 EI---LTAEDKEKIDMVILATESSVDQSKAGAVYVHSLLGIQPFARSFEMKEACYSATAA 151
Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
L A + + P + LV+A+DI+++ + E + GAG++AML+
Sbjct: 152 LNYAKLHV--EKHPDTRVLVLASDIAKYGIGTPG----------ESTQGAGSIAMLVKKD 199
Query: 181 PEIFQFDIGSNGYYSFEVMDTCRP-IPDSEAGNADLSLLSYLDCCAQSFKEYKKR 234
P I + + ++MD RP + N S YLD ++ EY+KR
Sbjct: 200 PRILILHDETLA-QTRDIMDFWRPNYTTTPYVNGMYSTKQYLDMLKTTWAEYQKR 253
>pdb|3SQZ|A Chain A, Crystal Structure Of Hmg_coa Synthase Complexed With Coa
Length = 389
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 119/236 (50%), Gaps = 19/236 (8%)
Query: 2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRF-ENLLMQQKSVSLPYEDPVSFAINAAA 60
+++GI+ I +++ +LA+ R D +F + LL+ S++ +D V+ A +A
Sbjct: 1 MRIGIDKIGFTSSQYVLNMKDLAEARGEDPQKFSKGLLLNALSIAPITDDVVTLAAGSAN 60
Query: 61 PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQA-CYSCTA 119
+ L+ DK I+++I +ES +D K+ + Y+H LG+ R FE+K+A CYS TA
Sbjct: 61 EI---LTAEDKEKIDMVILATESSVDQSKAGAVYVHSLLGIQPFARSFEMKEAXCYSATA 117
Query: 120 GLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISD 179
L A + + P + LV+A+DI+++ + E + GAG++AML+
Sbjct: 118 ALNYAKLHV--EKHPDTRVLVLASDIAKYGIGTPG----------ESTQGAGSIAMLVKK 165
Query: 180 KPEIFQFDIGSNGYYSFEVMDTCRP-IPDSEAGNADLSLLSYLDCCAQSFKEYKKR 234
P I + + ++MD RP + N S YLD ++ EY+KR
Sbjct: 166 DPRILILHDETLA-QTRDIMDFWRPNYTTTPYVNGMYSTKQYLDMLKTTWAEYQKR 220
>pdb|2WYA|A Chain A, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|B Chain B, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|C Chain C, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|D Chain D, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
Length = 460
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 110/241 (45%), Gaps = 24/241 (9%)
Query: 4 VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQK----SVSLPYEDPVSFAINAA 59
VGI A+ +Y + ++D +L KY ++ ++ L Q + SV ED S +
Sbjct: 6 VGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQ---EDINSLCLTVV 62
Query: 60 APLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL--FELKQACYSC 117
L++ + + +S+ + +E+ ID K++ T + + N + + ACY
Sbjct: 63 QRLMERI-QLPWDSVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGG 121
Query: 118 TAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLI 177
TA L A N++ S G A+V+ DI+ + + P+GGAGAVAMLI
Sbjct: 122 TASLFNAANWMESSSWDGRYAMVVCGDIAVYPSGNAR-----------PTGGAGAVAMLI 170
Query: 178 SDKPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKRV 235
K + + G G + V D +P SE D LS+ YL + + Y+K++
Sbjct: 171 GPKAPL-ALERGLRGTHMENVYDFYKPNLASEYPIVDGKLSIQCYLRALDRCYTSYRKKI 229
Query: 236 Q 236
Q
Sbjct: 230 Q 230
>pdb|2P8U|A Chain A, Crystal Structure Of Human 3-Hydroxy-3-Methylglutaryl Coa
Synthase I
pdb|2P8U|B Chain B, Crystal Structure Of Human 3-Hydroxy-3-Methylglutaryl Coa
Synthase I
Length = 478
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 106/240 (44%), Gaps = 18/240 (7%)
Query: 2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQK-SVSLPYEDPVSFAINAAA 60
+ VGI A+ +Y S ++D EL KY +D ++ L Q K ED S +
Sbjct: 23 MDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQ 82
Query: 61 PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL--FELKQACYSCT 118
L++ +N+ + I + +E+ ID KS+ T + + N + + A Y T
Sbjct: 83 NLMER-NNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNAXYGGT 141
Query: 119 AGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLIS 178
A + A+N+I S G ALV+A DI+ + + P+GG GAVA+LI
Sbjct: 142 AAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNAR-----------PTGGVGAVALLIG 190
Query: 179 DKPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKRVQ 236
+ F+ G G + D +P SE D LS+ YL + + Y K++
Sbjct: 191 PNAPLI-FERGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIH 249
>pdb|2F82|A Chain A, Hmg-Coa Synthase From Brassica Juncea In The Apo-Form
pdb|2F9A|A Chain A, Hmg-Coa Synthase From Brassica Juncea In Complex With
F-244
pdb|2FA0|A Chain A, Hmg-coa Synthase From Brassica Juncea In Complex With
Hmg-coa And Covalently Bound To Hmg-coa
Length = 450
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 22/184 (11%)
Query: 49 EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL--NRNCR 106
ED +S + NA L++ ID I + SE+ ID KS+ T++ N +
Sbjct: 50 EDVISMSFNAVTSLLEKY-KIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVE 108
Query: 107 LFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEP 166
+ ACY TA L +N++ S G LVI TD + + + P
Sbjct: 109 GVDSTNACYGGTAALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPAR-----------P 157
Query: 167 SGGAGAVAMLIS-DKPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSL-----LSY 220
+GGA A+AMLI D P +F+ + G + V D +P SE D L L
Sbjct: 158 TGGAAAIAMLIGPDAPIVFESKL--RGSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMA 215
Query: 221 LDCC 224
LD C
Sbjct: 216 LDSC 219
>pdb|2FA3|A Chain A, Hmg-Coa Synthase From Brassica Juncea In Complex With
Acetyl-Coa And Acetyl-Cys117
Length = 450
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 78/184 (42%), Gaps = 22/184 (11%)
Query: 49 EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL--NRNCR 106
ED +S + NA L++ ID I + SE+ ID KS+ T++ N +
Sbjct: 50 EDVISMSFNAVTSLLEKY-KIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVE 108
Query: 107 LFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEP 166
+ A Y TA L +N++ S G LVI TD + + + P
Sbjct: 109 GVDSTNAXYGGTAALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPAR-----------P 157
Query: 167 SGGAGAVAMLIS-DKPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSL-----LSY 220
+GGA A+AMLI D P +F+ + G + V D +P SE D L L
Sbjct: 158 TGGAAAIAMLIGPDAPIVFESKL--RGSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMA 215
Query: 221 LDCC 224
LD C
Sbjct: 216 LDSC 219
>pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HN9|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HND|A Chain A, Crystal Structure Of Beta-ketoacyl-acp Synthase Iii-coa
Complex
pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Malonyl-Coa
pdb|1HNK|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii, Apo
Tetragonal Form
pdb|2EFT|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2EFT|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2GYO|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
pdb|2GYO|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
Length = 317
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 11/157 (7%)
Query: 39 MQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHY 98
++++ ++ P E + AA I+ ++ I+K+ I LI+ + S S + I
Sbjct: 39 IRERHIAAPNETVSTMGFEAATRAIE-MAGIEKDQIGLIVVATTSATHAFPSAACQIQSM 97
Query: 99 LGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNEL 157
LG+ + C F++ AC T L +A ++ S ALV+ +D+ +R D+ +
Sbjct: 98 LGI-KGCPAFDVAAACAGFTYALSVADQYVKSGAVK--YALVVGSDVLARTCDPTDRGTI 154
Query: 158 TMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYY 194
+ F + GAGA + S++P I + ++G Y
Sbjct: 155 II---FGD---GAGAAVLAASEEPGIISTHLHADGSY 185
>pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
pdb|1EBL|B Chain B, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
Length = 317
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 11/157 (7%)
Query: 39 MQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHY 98
++++ ++ P E + AA I+ + I+K+ I LI+ + S S + I
Sbjct: 39 IRERHIAAPNETVSTXGFEAATRAIE-XAGIEKDQIGLIVVATTSATHAFPSAACQIQSX 97
Query: 99 LGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNEL 157
LG+ + C F++ AC T L +A ++ S ALV+ +D+ +R D+ +
Sbjct: 98 LGI-KGCPAFDVAAACAGFTYALSVADQYVKSGAVK--YALVVGSDVLARTCDPTDRGTI 154
Query: 158 TMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYY 194
+ F + GAGA + S++P I + ++G Y
Sbjct: 155 II---FGD---GAGAAVLAASEEPGIISTHLHADGSY 185
>pdb|1MZS|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii With
Bound Dichlorobenzyloxy-Indole-Carboxylic Acid Inhibitor
Length = 317
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 11/157 (7%)
Query: 39 MQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHY 98
++++ ++ P E + AA I+ ++ I+K+ I LI+ + S S + I
Sbjct: 39 IRERHIAAPNETVSTMGFEAATRAIE-MAGIEKDQIGLIVVATTSATHAFPSAACQIQSM 97
Query: 99 LGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNEL 157
LG+ + C F++ A T L +A ++ S ALV+ +D+ +R D+ +
Sbjct: 98 LGI-KGCPAFDVAAAXAGFTYALSVADQYVKSGAVK--YALVVGSDVLARTCDPTDRGTI 154
Query: 158 TMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYY 194
+ F + GAGA + S++P I + ++G Y
Sbjct: 155 II---FGD---GAGAAVLAASEEPGIISTHLHADGSY 185
>pdb|3IL9|A Chain A, Structure Of E. Coli Fabh
pdb|3IL9|B Chain B, Structure Of E. Coli Fabh
Length = 340
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 11/157 (7%)
Query: 39 MQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHY 98
++++ ++ P E + AA I+ ++ I+K+ I LI+ + S S + I
Sbjct: 62 IRERHIAAPNETVSTMGFEAATRAIE-MAGIEKDQIGLIVVATTSATHAFPSAACQIQSM 120
Query: 99 LGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNEL 157
LG+ + C F++ A T L +A ++ S ALV+ +D+ +R D+ +
Sbjct: 121 LGI-KGCPAFDVAAAXAGFTYALSVADQYVKSGAVK--YALVVGSDVLARTCDPTDRGTI 177
Query: 158 TMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYY 194
+ F + GAGA + S++P I + ++G Y
Sbjct: 178 II---FGD---GAGAAVLAASEEPGIISTHLHADGSY 208
>pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Degraded Form Of Acetyl-Coa
Length = 317
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 11/157 (7%)
Query: 39 MQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHY 98
++++ ++ P E + AA I+ + I+K+ I LI+ + S S + I
Sbjct: 39 IRERHIAAPNETVSTXGFEAATRAIE-XAGIEKDQIGLIVVATTSATHAFPSAACQIQSX 97
Query: 99 LGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNEL 157
LG+ + C F++ A T L +A ++ S ALV+ +D+ +R D+ +
Sbjct: 98 LGI-KGCPAFDVAAAXAGFTYALSVADQYVKSGAVK--YALVVGSDVLARTCDPTDRGTI 154
Query: 158 TMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYY 194
+ F + GAGA + S++P I + ++G Y
Sbjct: 155 II---FGD---GAGAAVLAASEEPGIISTHLHADGSY 185
>pdb|4DFE|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|C Chain C, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|D Chain D, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
Length = 333
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 9/130 (6%)
Query: 67 SNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN 126
++ID SI+LII + + S + + + LG+ + F+++ + A +
Sbjct: 80 ADIDPQSIDLIIVATSTPDFVFPSTACLLQNKLGIRNHGAAFDVQAVXSGFAYAVATADS 139
Query: 127 FILSKVSPGAKALVIATDI-SRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPEIFQ 185
FI S ALVI + SR +D+ + F + GAGAV + SD+P +
Sbjct: 140 FIRSGQH--RTALVIGAETFSRILDFKDRTTCVL---FGD---GAGAVILQASDEPGVLA 191
Query: 186 FDIGSNGYYS 195
+ ++G +S
Sbjct: 192 SALHADGSHS 201
>pdb|3ROW|A Chain A, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3ROW|B Chain B, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3S1Z|A Chain A, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S1Z|B Chain B, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S20|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
pdb|3S20|B Chain B, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
Length = 344
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 77/196 (39%), Gaps = 22/196 (11%)
Query: 58 AAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSC 117
A LID +NI I L+I S S S ++ + LG++ +C F++ AC +
Sbjct: 75 ARKALID--ANIGIEKIGLLINTSVSRDYLEPSTASIVSGNLGVSDHCMTFDVANACLAF 132
Query: 118 TAGLQMAINFI------LSKVSPGAKA-LVIATDISRFF---VTEDKNELTMEWAFFEPS 167
G+ +A + + V G A LV + R VTE+ E E A
Sbjct: 133 INGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEE--EFRNELAALTLG 190
Query: 168 GGAGAVAM----LISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDC 223
GA A+ M L+ D P G + E CR D + L L+ +
Sbjct: 191 CGAAAMVMARSELVPDAPRYK----GGVTRSATEWNKLCRGNLDRMVTDTRLLLIEGIKL 246
Query: 224 CAQSFKEYKKRVQYKI 239
++F K+ + + +
Sbjct: 247 AQKTFVAAKQVLGWAV 262
>pdb|3S21|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal)
pdb|3S23|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal) Xe Derivative
Length = 345
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 77/196 (39%), Gaps = 22/196 (11%)
Query: 58 AAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSC 117
A LID +NI I L+I S S S ++ + LG++ +C F++ AC +
Sbjct: 76 ARKALID--ANIGIEKIGLLINTSVSRDYLEPSTASIVSGNLGVSDHCMTFDVANACLAF 133
Query: 118 TAGLQMAINFI------LSKVSPGAKA-LVIATDISRFF---VTEDKNELTMEWAFFEPS 167
G+ +A + + V G A LV + R VTE+ E E A
Sbjct: 134 INGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEE--EFRNELAALTLG 191
Query: 168 GGAGAVAM----LISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDC 223
GA A+ M L+ D P G + E CR D + L L+ +
Sbjct: 192 CGAAAMVMARSELVPDAPRYK----GGVTRSATEWNKLCRGNLDRMVTDTRLLLIEGIKL 247
Query: 224 CAQSFKEYKKRVQYKI 239
++F K+ + + +
Sbjct: 248 AQKTFVAAKQVLGWAV 263
>pdb|3GWA|A Chain A, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWA|B Chain B, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
Length = 365
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/154 (18%), Positives = 62/154 (40%), Gaps = 6/154 (3%)
Query: 39 MQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHY 98
++++ ++ P E A AA L + + ++ +I C+++ + + + H
Sbjct: 68 IRERRIAAPRETAADLAYEAARKLFAQ-GAVGADQVDFVILCTQAPDYVLPTSACMLQHR 126
Query: 99 LGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELT 158
LG+ + ++ C GL +A + + + L+ A S++ DK+ T
Sbjct: 127 LGIPTHAGALDVNLGCSGYVYGLSLAKGLVETGAA-RCVLLLTADTYSKYLHPLDKSVRT 185
Query: 159 MEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNG 192
+ F A AV + I F G++G
Sbjct: 186 L----FGDGASATAVIAEHGELERIGPFVFGTDG 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,074,975
Number of Sequences: 62578
Number of extensions: 274328
Number of successful extensions: 619
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 547
Number of HSP's gapped (non-prelim): 33
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)