Query psy2407
Match_columns 245
No_of_seqs 204 out of 1844
Neff 8.3
Searched_HMMs 46136
Date Sat Aug 17 00:11:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2407.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2407hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0332 FabH 3-oxoacyl-[acyl-c 100.0 4.1E-46 8.9E-51 325.4 19.9 232 1-243 1-244 (323)
2 PLN02577 hydroxymethylglutaryl 100.0 1.5E-40 3.2E-45 303.6 23.2 226 2-242 3-241 (459)
3 TIGR01833 HMG-CoA-S_euk 3-hydr 100.0 2.7E-39 5.8E-44 295.0 21.8 219 3-236 1-226 (454)
4 TIGR01835 HMG-CoA-S_prok 3-hyd 100.0 1.2E-38 2.7E-43 287.6 24.9 224 4-243 1-226 (379)
5 COG3425 PksG 3-hydroxy-3-methy 100.0 9.9E-39 2.1E-43 280.4 19.5 228 2-243 1-230 (377)
6 PRK05963 3-oxoacyl-(acyl carri 100.0 4.8E-38 1E-42 278.5 22.5 229 3-243 3-248 (326)
7 PRK12880 3-oxoacyl-(acyl carri 100.0 4.2E-37 9.2E-42 275.1 22.4 230 2-242 6-262 (353)
8 PRK07204 3-oxoacyl-(acyl carri 100.0 1.4E-35 3E-40 263.1 23.7 231 2-243 3-251 (329)
9 CHL00203 fabH 3-oxoacyl-acyl-c 100.0 2E-35 4.3E-40 261.9 22.4 230 2-243 1-247 (326)
10 PRK12879 3-oxoacyl-(acyl carri 100.0 3.1E-35 6.7E-40 260.2 23.5 230 2-242 3-245 (325)
11 PLN02326 3-oxoacyl-[acyl-carri 100.0 7.7E-35 1.7E-39 263.0 22.9 230 2-243 46-301 (379)
12 PRK09258 3-oxoacyl-(acyl carri 100.0 1.4E-34 3E-39 257.5 22.1 235 2-243 4-260 (338)
13 cd00830 KAS_III Ketoacyl-acyl 100.0 2.6E-34 5.7E-39 253.4 22.7 230 3-243 1-244 (320)
14 PRK04262 hypothetical protein; 100.0 2.3E-34 5E-39 257.2 22.2 227 2-243 1-230 (347)
15 PRK09352 3-oxoacyl-(acyl carri 100.0 8E-34 1.7E-38 250.5 24.2 228 1-242 1-239 (319)
16 PRK06840 hypothetical protein; 100.0 7.6E-34 1.7E-38 252.9 23.0 233 2-243 3-258 (339)
17 TIGR00747 fabH 3-oxoacyl-(acyl 100.0 9.3E-34 2E-38 250.1 22.7 231 2-243 1-240 (318)
18 TIGR00748 HMG_CoA_syn_Arc hydr 100.0 5.8E-34 1.3E-38 254.3 21.5 226 3-243 1-229 (345)
19 PRK06816 3-oxoacyl-(acyl carri 100.0 9.3E-34 2E-38 255.9 21.0 238 2-243 1-293 (378)
20 PLN03169 chalcone synthase fam 100.0 1.4E-32 3.1E-37 248.9 19.9 233 3-242 21-301 (391)
21 cd00831 CHS_like Chalcone and 100.0 1.5E-32 3.3E-37 246.6 18.7 233 3-242 1-281 (361)
22 PLN03171 chalcone synthase-lik 100.0 6.9E-32 1.5E-36 244.9 19.8 173 4-181 23-234 (399)
23 PRK07515 3-oxoacyl-(acyl carri 100.0 2.1E-30 4.4E-35 233.7 22.1 228 2-243 1-292 (372)
24 cd00827 init_cond_enzymes "ini 100.0 7.3E-30 1.6E-34 225.4 20.9 222 3-238 1-239 (324)
25 PF01154 HMG_CoA_synt_N: Hydro 100.0 1.4E-29 3E-34 201.6 14.1 167 2-180 3-172 (174)
26 PLN03172 chalcone synthase fam 100.0 2E-28 4.3E-33 221.6 20.1 227 4-241 17-296 (393)
27 PLN03168 chalcone synthase; Pr 100.0 3.6E-28 7.8E-33 219.8 21.0 227 4-239 16-293 (389)
28 PLN03170 chalcone synthase; Pr 100.0 3.3E-28 7.1E-33 220.8 18.8 230 4-241 21-300 (401)
29 PF00195 Chal_sti_synt_N: Chal 100.0 1.1E-28 2.3E-33 205.7 13.2 173 3-181 14-226 (226)
30 PLN03173 chalcone synthase; Pr 100.0 1.3E-27 2.9E-32 216.0 19.7 227 4-241 17-296 (391)
31 KOG1393|consensus 100.0 2.4E-27 5.1E-32 205.6 16.5 221 3-236 11-236 (462)
32 PLN02932 3-ketoacyl-CoA syntha 99.9 7.3E-26 1.6E-30 207.6 17.5 188 3-197 67-299 (478)
33 PLN02377 3-ketoacyl-CoA syntha 99.9 3.1E-24 6.6E-29 198.0 17.5 188 3-197 97-323 (502)
34 COG3424 BcsA Predicted naringe 99.9 2.4E-23 5.2E-28 176.9 16.4 171 4-180 2-200 (356)
35 PLN02854 3-ketoacyl-CoA syntha 99.9 1.1E-22 2.4E-27 187.9 17.4 188 3-198 113-340 (521)
36 PLN02192 3-ketoacyl-CoA syntha 99.9 9.9E-23 2.1E-27 187.8 16.9 169 3-179 101-298 (511)
37 PLN00415 3-ketoacyl-CoA syntha 99.9 6.1E-23 1.3E-27 186.7 14.4 170 3-180 59-257 (466)
38 PF08392 FAE1_CUT1_RppA: FAE1/ 99.9 5.4E-21 1.2E-25 163.8 15.2 172 3-181 8-207 (290)
39 cd00327 cond_enzymes Condensin 99.8 2.4E-19 5.1E-24 152.8 14.1 107 50-180 6-112 (254)
40 TIGR02845 spore_V_AD stage V s 99.8 5E-18 1.1E-22 147.5 14.7 118 48-180 47-171 (327)
41 PRK06147 3-oxoacyl-(acyl carri 99.7 3.3E-17 7.2E-22 146.6 15.7 176 1-180 2-201 (348)
42 cd00825 decarbox_cond_enzymes 99.7 2.4E-17 5.2E-22 145.8 13.0 125 51-180 11-171 (332)
43 PRK08304 stage V sporulation p 99.7 7.2E-16 1.6E-20 134.4 14.8 119 48-180 53-177 (337)
44 PF08545 ACP_syn_III: 3-Oxoacy 99.6 4.1E-16 9E-21 110.5 6.6 76 108-192 1-80 (80)
45 cd00751 thiolase Thiolase are 99.6 2E-15 4.4E-20 136.9 11.0 100 46-148 17-116 (386)
46 PRK07108 acetyl-CoA acetyltran 99.6 9.3E-15 2E-19 132.7 11.4 111 36-149 11-123 (392)
47 PRK05656 acetyl-CoA acetyltran 99.6 1.6E-14 3.5E-19 131.3 11.6 99 47-148 22-120 (393)
48 TIGR01930 AcCoA-C-Actrans acet 99.6 1.8E-14 3.9E-19 130.7 11.2 98 48-148 18-115 (386)
49 PRK06205 acetyl-CoA acetyltran 99.6 2E-14 4.4E-19 131.1 10.9 100 47-149 22-121 (404)
50 PRK08235 acetyl-CoA acetyltran 99.6 2.5E-14 5.3E-19 130.0 11.2 100 47-149 22-121 (393)
51 PRK09051 beta-ketothiolase; Pr 99.5 4E-14 8.6E-19 128.7 11.6 99 47-148 23-122 (394)
52 PRK08242 acetyl-CoA acetyltran 99.5 8.7E-14 1.9E-18 126.5 11.5 101 46-149 23-124 (402)
53 PRK12578 acetyl-CoA acetyltran 99.5 1.5E-13 3.3E-18 124.6 11.4 98 47-148 17-114 (385)
54 PF00108 Thiolase_N: Thiolase, 99.5 1.2E-13 2.6E-18 119.2 10.2 101 46-149 21-121 (264)
55 PRK09052 acetyl-CoA acetyltran 99.5 2.3E-13 5E-18 123.8 11.4 99 47-148 27-127 (399)
56 PRK08170 acetyl-CoA acetyltran 99.5 2.7E-13 5.9E-18 124.4 11.1 98 48-148 24-121 (426)
57 PRK08313 acetyl-CoA acetyltran 99.5 3.2E-13 6.9E-18 122.5 10.9 97 47-148 20-118 (386)
58 cd00834 KAS_I_II Beta-ketoacyl 99.5 3.7E-12 8.1E-17 115.9 17.8 126 50-180 70-241 (406)
59 PRK05790 putative acyltransfer 99.5 4.4E-13 9.6E-18 121.9 11.6 98 47-147 22-119 (393)
60 PRK06954 acetyl-CoA acetyltran 99.5 3.6E-13 7.9E-18 122.6 10.9 99 47-148 27-125 (397)
61 smart00825 PKS_KS Beta-ketoacy 99.5 1.2E-12 2.7E-17 119.8 14.3 122 51-179 87-244 (424)
62 PRK12404 stage V sporulation p 99.4 2E-12 4.4E-17 112.4 13.7 92 48-149 51-142 (334)
63 cd00826 nondecarbox_cond_enzym 99.4 8.6E-13 1.9E-17 120.0 11.2 98 47-148 19-117 (393)
64 PRK06059 lipid-transfer protei 99.4 1.1E-12 2.4E-17 119.6 11.1 97 48-148 20-117 (399)
65 PLN02287 3-ketoacyl-CoA thiola 99.4 1.3E-12 2.7E-17 120.6 11.6 99 47-148 67-166 (452)
66 cd00829 SCP-x_thiolase Thiolas 99.4 1.3E-12 2.8E-17 117.9 10.9 98 48-149 13-110 (375)
67 PRK07661 acetyl-CoA acetyltran 99.4 1.5E-12 3.2E-17 118.3 11.2 98 48-148 24-122 (391)
68 PRK06064 acetyl-CoA acetyltran 99.4 3.5E-12 7.7E-17 115.8 11.3 98 47-148 18-117 (389)
69 PRK06065 acetyl-CoA acetyltran 99.4 3.7E-12 7.9E-17 115.7 11.1 95 47-146 25-121 (392)
70 PRK06289 acetyl-CoA acetyltran 99.4 3.1E-12 6.6E-17 116.8 10.6 101 42-148 17-122 (403)
71 PRK08963 fadI 3-ketoacyl-CoA t 99.4 4.2E-12 9.1E-17 116.7 10.6 100 47-149 25-124 (428)
72 PRK08131 acetyl-CoA acetyltran 99.4 6.5E-12 1.4E-16 114.4 11.5 100 47-149 22-122 (401)
73 PRK07850 acetyl-CoA acetyltran 99.3 7.5E-12 1.6E-16 113.6 11.3 99 47-148 22-121 (387)
74 PRK13359 beta-ketoadipyl CoA t 99.3 8.1E-12 1.8E-16 113.7 11.4 100 47-149 22-123 (400)
75 PRK06633 acetyl-CoA acetyltran 99.3 5.4E-12 1.2E-16 114.5 10.0 100 46-148 22-121 (392)
76 PRK09050 beta-ketoadipyl CoA t 99.3 9.1E-12 2E-16 113.5 10.9 100 47-149 22-123 (401)
77 TIGR02446 FadI fatty oxidation 99.3 8.5E-12 1.8E-16 114.6 10.6 99 47-148 27-125 (430)
78 PRK06445 acetyl-CoA acetyltran 99.3 8.5E-12 1.8E-16 113.5 10.4 99 47-148 28-127 (394)
79 PRK07516 acetyl-CoA acetyltran 99.3 1.4E-11 2.9E-16 112.0 11.0 98 47-148 18-117 (389)
80 PRK07851 acetyl-CoA acetyltran 99.3 1.7E-11 3.6E-16 112.0 11.3 99 47-149 23-123 (406)
81 PRK06366 acetyl-CoA acetyltran 99.3 1.6E-11 3.5E-16 111.5 11.2 98 48-148 23-120 (388)
82 TIGR02430 pcaF beta-ketoadipyl 99.3 1.6E-11 3.4E-16 111.8 10.9 100 47-149 21-122 (400)
83 PRK06504 acetyl-CoA acetyltran 99.3 2.4E-11 5.2E-16 110.3 11.3 100 47-149 22-122 (390)
84 PLN02644 acetyl-CoA C-acetyltr 99.3 2.6E-11 5.7E-16 110.3 11.5 98 47-147 21-118 (394)
85 cd00833 PKS polyketide synthas 99.3 5E-11 1.1E-15 108.9 13.2 122 51-179 87-244 (421)
86 PTZ00455 3-ketoacyl-CoA thiola 99.3 4.1E-11 8.9E-16 110.3 11.6 99 47-148 44-152 (438)
87 PRK06157 acetyl-CoA acetyltran 99.3 4.2E-11 9.1E-16 109.1 11.1 98 47-148 23-120 (398)
88 PRK06158 thiolase; Provisional 99.2 3.2E-11 6.9E-16 109.4 10.0 92 47-146 24-116 (384)
89 PRK06501 3-oxoacyl-(acyl carri 99.2 2.6E-10 5.6E-15 104.8 16.0 169 2-179 11-254 (425)
90 PRK07314 3-oxoacyl-(acyl carri 99.2 1.2E-09 2.5E-14 100.0 18.7 173 1-179 1-241 (411)
91 PRK08947 fadA 3-ketoacyl-CoA t 99.2 7.9E-11 1.7E-15 106.9 10.4 99 47-148 23-123 (387)
92 PRK09268 acetyl-CoA acetyltran 99.2 1.4E-10 3.1E-15 106.4 11.4 100 47-149 27-126 (427)
93 TIGR02445 fadA fatty oxidation 99.2 1.2E-10 2.6E-15 105.7 9.6 100 47-149 21-122 (385)
94 PRK08256 lipid-transfer protei 99.2 1.7E-10 3.6E-15 105.0 10.4 93 48-147 19-111 (391)
95 cd00828 elong_cond_enzymes "el 99.2 1.1E-09 2.4E-14 99.9 15.3 127 49-179 70-240 (407)
96 PRK06365 acetyl-CoA acetyltran 99.2 2.5E-10 5.5E-15 104.9 10.9 98 47-148 33-131 (430)
97 PRK06025 acetyl-CoA acetyltran 99.1 3.5E-10 7.6E-15 103.0 11.5 102 45-149 23-125 (417)
98 TIGR03150 fabF beta-ketoacyl-a 99.1 2E-09 4.3E-14 98.1 15.1 124 51-179 71-240 (407)
99 PRK05952 3-oxoacyl-(acyl carri 99.1 7.4E-09 1.6E-13 93.9 17.4 164 1-179 1-219 (381)
100 PRK07801 acetyl-CoA acetyltran 99.1 6.7E-10 1.5E-14 100.8 10.4 98 48-148 23-121 (382)
101 PRK08439 3-oxoacyl-(acyl carri 99.1 5.4E-09 1.2E-13 95.6 15.9 173 1-179 1-241 (406)
102 PF00109 ketoacyl-synt: Beta-k 99.1 3.2E-09 6.8E-14 90.5 13.2 124 51-179 87-250 (254)
103 PRK07103 polyketide beta-ketoa 99.1 4.8E-09 1E-13 96.0 15.2 124 51-179 80-248 (410)
104 PRK09185 3-oxoacyl-(acyl carri 99.0 4.1E-08 8.8E-13 89.4 18.2 88 89-180 137-233 (392)
105 PRK06333 3-oxoacyl-(acyl carri 99.0 1.7E-08 3.6E-13 92.8 14.7 124 51-179 82-253 (424)
106 PRK06690 acetyl-CoA acetyltran 98.9 5.7E-09 1.2E-13 93.8 10.6 94 47-148 21-114 (361)
107 PLN02836 3-oxoacyl-[acyl-carri 98.9 3.1E-08 6.8E-13 91.4 15.2 122 51-179 93-264 (437)
108 PRK08142 acetyl-CoA acetyltran 98.9 5.3E-09 1.1E-13 95.0 10.0 93 47-147 21-113 (388)
109 PTZ00050 3-oxoacyl-acyl carrie 98.9 3.1E-08 6.8E-13 91.0 14.5 125 50-179 76-248 (421)
110 PRK07967 3-oxoacyl-(acyl carri 98.9 7.2E-08 1.6E-12 88.2 15.9 173 1-179 1-241 (406)
111 PRK08722 3-oxoacyl-(acyl carri 98.9 6.7E-08 1.5E-12 88.6 15.8 171 3-179 5-243 (414)
112 PRK08257 acetyl-CoA acetyltran 98.8 3.1E-08 6.7E-13 92.7 11.5 93 50-147 26-120 (498)
113 PRK07855 lipid-transfer protei 98.8 2.7E-08 5.8E-13 90.4 10.3 89 47-143 20-108 (386)
114 PLN02787 3-oxoacyl-[acyl-carri 98.8 1.9E-07 4.2E-12 88.0 16.3 172 2-179 129-370 (540)
115 PRK09116 3-oxoacyl-(acyl carri 98.8 2.1E-07 4.6E-12 85.1 16.1 172 1-179 1-242 (405)
116 PRK06066 acetyl-CoA acetyltran 98.8 4.9E-08 1.1E-12 88.5 11.1 95 47-148 21-117 (385)
117 PRK14691 3-oxoacyl-(acyl carri 98.8 2.4E-07 5.3E-12 82.8 15.3 123 51-179 4-171 (342)
118 cd00832 CLF Chain-length facto 98.7 3.2E-07 7E-12 83.7 15.0 123 51-179 71-238 (399)
119 COG0183 PaaJ Acetyl-CoA acetyl 98.7 4.6E-08 1E-12 89.0 9.3 101 48-150 24-126 (392)
120 KOG1390|consensus 98.7 3.9E-08 8.5E-13 84.9 7.4 112 36-150 15-126 (396)
121 PRK07910 3-oxoacyl-(acyl carri 98.7 5.3E-07 1.2E-11 82.8 14.8 172 1-179 11-251 (418)
122 KOG1406|consensus 98.6 7.6E-08 1.7E-12 81.3 5.3 96 47-149 25-120 (408)
123 COG3321 Polyketide synthase mo 98.6 7.7E-06 1.7E-10 82.9 20.2 121 52-179 92-248 (1061)
124 PRK06519 3-oxoacyl-(acyl carri 98.6 9.8E-07 2.1E-11 80.5 12.4 171 2-179 6-252 (398)
125 PRK07937 lipid-transfer protei 98.5 7.3E-07 1.6E-11 80.1 10.3 91 49-147 21-114 (352)
126 PF07451 SpoVAD: Stage V sporu 98.4 2.3E-05 5E-10 67.8 16.3 88 51-148 51-138 (329)
127 TIGR02813 omega_3_PfaA polyket 98.4 8.9E-06 1.9E-10 88.3 16.8 83 91-179 185-280 (2582)
128 COG0304 FabB 3-oxoacyl-(acyl-c 98.2 5.2E-05 1.1E-09 69.3 15.0 126 50-180 70-242 (412)
129 KOG1391|consensus 98.0 1.2E-05 2.6E-10 68.0 6.4 98 46-149 23-124 (396)
130 KOG1392|consensus 97.9 1.1E-05 2.4E-10 69.2 3.6 99 48-149 63-161 (465)
131 KOG1389|consensus 97.8 6.4E-05 1.4E-09 65.2 6.8 101 46-149 56-156 (435)
132 PF08540 HMG_CoA_synt_C: Hydro 97.8 2.3E-05 5.1E-10 68.0 3.9 50 187-236 4-55 (282)
133 KOG1394|consensus 97.6 0.0011 2.4E-08 58.7 12.3 174 1-179 23-266 (440)
134 PF08541 ACP_syn_III_C: 3-Oxoa 96.3 0.0064 1.4E-07 43.4 4.1 73 63-144 1-78 (90)
135 PF13723 Ketoacyl-synt_2: Beta 95.4 0.61 1.3E-05 39.1 13.0 115 51-182 34-172 (218)
136 TIGR00748 HMG_CoA_syn_Arc hydr 95.3 0.055 1.2E-06 48.5 6.8 82 51-142 206-293 (345)
137 PRK06816 3-oxoacyl-(acyl carri 95.1 0.11 2.3E-06 47.2 8.3 85 53-146 272-366 (378)
138 PRK06147 3-oxoacyl-(acyl carri 95.0 0.074 1.6E-06 47.8 6.8 91 53-145 234-331 (348)
139 PRK07204 3-oxoacyl-(acyl carri 94.7 0.14 3.1E-06 45.2 7.7 81 54-143 231-316 (329)
140 CHL00203 fabH 3-oxoacyl-acyl-c 94.6 0.14 3E-06 45.4 7.4 81 54-143 227-312 (326)
141 PRK12879 3-oxoacyl-(acyl carri 94.3 0.2 4.2E-06 44.2 7.6 81 54-143 226-311 (325)
142 KOG1202|consensus 94.1 0.15 3.3E-06 52.1 7.0 126 50-180 86-245 (2376)
143 PRK09258 3-oxoacyl-(acyl carri 94.0 0.24 5.3E-06 43.9 7.8 84 53-145 239-327 (338)
144 PRK06840 hypothetical protein; 93.8 0.27 5.9E-06 43.6 7.8 81 54-143 238-322 (339)
145 TIGR00747 fabH 3-oxoacyl-(acyl 93.8 0.16 3.4E-06 44.7 6.1 82 53-143 219-305 (318)
146 PRK05963 3-oxoacyl-(acyl carri 93.7 0.29 6.2E-06 43.2 7.7 83 52-143 226-313 (326)
147 PLN02326 3-oxoacyl-[acyl-carri 93.3 0.38 8.2E-06 43.7 7.8 81 54-143 281-366 (379)
148 COG0332 FabH 3-oxoacyl-[acyl-c 93.3 0.19 4.1E-06 44.7 5.6 83 51-142 221-308 (323)
149 cd00830 KAS_III Ketoacyl-acyl 93.2 0.35 7.5E-06 42.4 7.2 82 53-143 223-309 (320)
150 PRK04262 hypothetical protein; 92.8 0.25 5.5E-06 44.2 5.9 80 52-141 208-293 (347)
151 cd00825 decarbox_cond_enzymes 92.6 0.76 1.6E-05 40.3 8.6 78 52-131 204-286 (332)
152 PRK09352 3-oxoacyl-(acyl carri 92.3 0.58 1.3E-05 41.0 7.4 81 54-143 220-305 (319)
153 PRK07515 3-oxoacyl-(acyl carri 91.6 0.45 9.7E-06 43.0 6.0 82 52-143 270-358 (372)
154 PRK08257 acetyl-CoA acetyltran 91.6 1 2.3E-05 42.5 8.6 82 53-142 292-382 (498)
155 PRK07937 lipid-transfer protei 90.6 1.5 3.2E-05 39.5 8.3 37 57-102 254-290 (352)
156 cd00327 cond_enzymes Condensin 89.9 2 4.3E-05 36.0 8.2 80 51-131 143-226 (254)
157 PRK09052 acetyl-CoA acetyltran 89.5 1 2.2E-05 41.3 6.4 71 54-130 298-375 (399)
158 PRK06025 acetyl-CoA acetyltran 89.5 1.1 2.5E-05 41.2 6.7 70 56-131 318-394 (417)
159 PRK09051 beta-ketothiolase; Pr 89.2 1.5 3.3E-05 40.1 7.3 42 55-102 294-335 (394)
160 PRK06205 acetyl-CoA acetyltran 89.1 1.4 3.1E-05 40.4 7.1 42 55-102 300-341 (404)
161 PF02803 Thiolase_C: Thiolase, 88.8 1.9 4.1E-05 32.8 6.5 71 55-131 24-101 (123)
162 COG0304 FabB 3-oxoacyl-(acyl-c 88.8 0.84 1.8E-05 42.0 5.3 45 54-100 277-322 (412)
163 PF02801 Ketoacyl-synt_C: Beta 88.7 0.37 8E-06 36.2 2.5 77 53-131 25-110 (119)
164 PRK06366 acetyl-CoA acetyltran 88.6 1.3 2.8E-05 40.4 6.4 78 55-141 287-371 (388)
165 PRK06064 acetyl-CoA acetyltran 88.1 2.2 4.8E-05 38.8 7.6 42 54-101 259-300 (389)
166 PRK07850 acetyl-CoA acetyltran 87.6 2.8 6.1E-05 38.2 8.0 80 53-141 285-371 (387)
167 PRK07851 acetyl-CoA acetyltran 86.8 1.1 2.5E-05 41.0 5.0 78 55-141 305-389 (406)
168 PRK07516 acetyl-CoA acetyltran 85.1 2.6 5.7E-05 38.3 6.5 44 53-102 260-303 (389)
169 cd00831 CHS_like Chalcone and 84.6 3 6.5E-05 37.4 6.6 82 53-143 259-350 (361)
170 PTZ00455 3-ketoacyl-CoA thiola 84.5 3.4 7.4E-05 38.4 6.9 46 52-103 308-353 (438)
171 PRK12880 3-oxoacyl-(acyl carri 84.4 2.4 5.3E-05 38.1 5.8 72 53-133 242-318 (353)
172 PRK05790 putative acyltransfer 84.4 4 8.7E-05 37.2 7.3 41 55-101 293-333 (393)
173 PRK06158 thiolase; Provisional 84.3 4.6 0.0001 36.7 7.6 43 54-102 255-297 (384)
174 PRK06690 acetyl-CoA acetyltran 84.0 4.2 9.2E-05 36.8 7.2 73 53-131 258-337 (361)
175 PRK14691 3-oxoacyl-(acyl carri 83.9 3.2 6.9E-05 37.2 6.3 48 52-101 205-253 (342)
176 cd00829 SCP-x_thiolase Thiolas 83.7 5.6 0.00012 35.7 8.0 45 53-103 251-295 (375)
177 PRK06519 3-oxoacyl-(acyl carri 83.4 4.5 9.9E-05 37.0 7.2 77 53-132 280-358 (398)
178 COG3425 PksG 3-hydroxy-3-methy 83.3 6.7 0.00015 35.6 8.0 83 50-141 206-295 (377)
179 PRK09050 beta-ketoadipyl CoA t 82.9 4.7 0.0001 37.0 7.1 42 55-102 299-340 (401)
180 TIGR03150 fabF beta-ketoacyl-a 82.9 2.5 5.3E-05 38.4 5.3 77 54-132 276-359 (407)
181 PRK13359 beta-ketoadipyl CoA t 82.2 4.9 0.00011 36.9 6.9 41 55-101 298-338 (400)
182 PRK07661 acetyl-CoA acetyltran 82.0 3.7 7.9E-05 37.5 6.1 72 54-131 290-368 (391)
183 PRK08947 fadA 3-ketoacyl-CoA t 81.8 7 0.00015 35.6 7.8 41 55-101 284-324 (387)
184 cd00834 KAS_I_II Beta-ketoacyl 81.6 4.1 8.9E-05 36.9 6.3 80 52-133 274-360 (406)
185 PRK07314 3-oxoacyl-(acyl carri 81.6 3.2 6.9E-05 37.9 5.5 77 55-133 278-361 (411)
186 PRK06504 acetyl-CoA acetyltran 81.3 3.4 7.4E-05 37.7 5.6 47 51-103 286-332 (390)
187 TIGR02430 pcaF beta-ketoadipyl 80.3 5.8 0.00013 36.4 6.8 42 55-102 298-339 (400)
188 PLN02787 3-oxoacyl-[acyl-carri 80.2 4.7 0.0001 38.5 6.3 77 55-133 407-489 (540)
189 PRK06289 acetyl-CoA acetyltran 80.1 4.2 9.1E-05 37.2 5.8 43 54-102 277-319 (403)
190 cd00832 CLF Chain-length facto 80.0 6.1 0.00013 36.1 6.8 79 52-133 269-353 (399)
191 PRK06066 acetyl-CoA acetyltran 79.8 5 0.00011 36.6 6.1 41 56-102 259-301 (385)
192 PRK12578 acetyl-CoA acetyltran 79.8 4.7 0.0001 36.6 6.0 43 54-102 258-300 (385)
193 PRK07855 lipid-transfer protei 79.7 2.4 5.2E-05 38.6 4.0 43 54-102 267-309 (386)
194 PRK08242 acetyl-CoA acetyltran 79.5 6.5 0.00014 36.1 6.8 77 56-141 303-386 (402)
195 PRK06445 acetyl-CoA acetyltran 79.2 9.6 0.00021 34.8 7.8 78 55-141 294-378 (394)
196 PRK09185 3-oxoacyl-(acyl carri 79.1 5.5 0.00012 36.3 6.2 75 55-133 262-342 (392)
197 PRK08142 acetyl-CoA acetyltran 79.1 2.4 5.2E-05 38.7 3.8 43 53-101 255-297 (388)
198 cd00826 nondecarbox_cond_enzym 78.9 5.8 0.00013 36.2 6.3 43 54-102 270-312 (393)
199 cd00828 elong_cond_enzymes "el 78.8 4.6 0.0001 36.7 5.6 79 52-132 273-358 (407)
200 PRK08313 acetyl-CoA acetyltran 78.3 3.6 7.8E-05 37.4 4.8 45 52-102 254-300 (386)
201 PRK05952 3-oxoacyl-(acyl carri 77.8 5 0.00011 36.5 5.5 78 52-133 253-336 (381)
202 PRK05656 acetyl-CoA acetyltran 77.7 8.4 0.00018 35.2 7.0 41 56-102 294-334 (393)
203 TIGR01930 AcCoA-C-Actrans acet 77.6 8.4 0.00018 35.0 6.9 41 55-101 288-328 (386)
204 PRK08963 fadI 3-ketoacyl-CoA t 76.7 11 0.00024 34.9 7.5 29 53-82 309-337 (428)
205 PRK08256 lipid-transfer protei 76.7 7.7 0.00017 35.3 6.4 43 54-102 265-307 (391)
206 PRK07910 3-oxoacyl-(acyl carri 75.2 5.7 0.00012 36.6 5.2 76 54-132 287-368 (418)
207 PTZ00050 3-oxoacyl-acyl carrie 75.2 9.8 0.00021 35.0 6.8 79 53-133 283-370 (421)
208 PRK06333 3-oxoacyl-(acyl carri 75.0 5.2 0.00011 36.7 4.9 78 53-132 288-371 (424)
209 PRK06157 acetyl-CoA acetyltran 75.0 12 0.00026 34.2 7.3 43 55-103 268-312 (398)
210 COG1214 Inactive homolog of me 75.0 6.8 0.00015 32.8 5.2 65 46-111 32-96 (220)
211 cd00751 thiolase Thiolase are 73.8 11 0.00024 34.2 6.6 43 54-102 286-328 (386)
212 PRK08722 3-oxoacyl-(acyl carri 73.5 12 0.00026 34.4 6.8 78 54-133 279-364 (414)
213 TIGR02445 fadA fatty oxidation 73.4 18 0.00039 32.9 8.0 41 55-101 282-322 (385)
214 TIGR01835 HMG-CoA-S_prok 3-hyd 73.4 7.5 0.00016 35.3 5.4 49 52-102 204-252 (379)
215 smart00825 PKS_KS Beta-ketoacy 72.9 9.9 0.00021 34.7 6.2 80 52-133 278-367 (424)
216 PRK06501 3-oxoacyl-(acyl carri 72.9 6.8 0.00015 36.1 5.1 78 54-133 290-374 (425)
217 PRK09116 3-oxoacyl-(acyl carri 72.7 9.6 0.00021 34.9 6.0 76 53-132 275-356 (405)
218 PLN02287 3-ketoacyl-CoA thiola 72.4 10 0.00022 35.5 6.1 71 55-131 333-410 (452)
219 cd00827 init_cond_enzymes "ini 72.0 25 0.00054 30.6 8.3 86 51-145 221-315 (324)
220 PRK08235 acetyl-CoA acetyltran 69.8 12 0.00025 34.3 5.8 70 54-129 292-368 (393)
221 PLN02836 3-oxoacyl-[acyl-carri 69.5 12 0.00026 34.6 6.0 46 53-100 299-345 (437)
222 cd00833 PKS polyketide synthas 68.9 15 0.00032 33.3 6.4 80 52-133 278-367 (421)
223 PRK07108 acetyl-CoA acetyltran 68.6 11 0.00025 34.3 5.5 24 54-78 291-314 (392)
224 PLN03169 chalcone synthase fam 68.5 24 0.00052 32.2 7.6 81 56-143 284-375 (391)
225 KOG1394|consensus 68.4 4.3 9.3E-05 36.6 2.6 57 42-101 291-348 (440)
226 PRK06065 acetyl-CoA acetyltran 68.2 8.6 0.00019 35.1 4.6 27 55-82 264-292 (392)
227 PRK09604 UGMP family protein; 66.8 14 0.0003 33.0 5.6 30 51-81 51-80 (332)
228 PRK06633 acetyl-CoA acetyltran 66.6 17 0.00037 33.3 6.2 70 54-131 291-369 (392)
229 PRK06365 acetyl-CoA acetyltran 66.6 22 0.00047 33.0 7.0 43 54-102 294-338 (430)
230 COG3473 Maleate cis-trans isom 66.4 55 0.0012 27.4 8.4 97 7-112 6-107 (238)
231 PLN02644 acetyl-CoA C-acetyltr 65.0 21 0.00045 32.6 6.5 42 54-101 292-333 (394)
232 PRK06059 lipid-transfer protei 64.9 21 0.00046 32.5 6.6 42 55-102 275-316 (399)
233 PRK06954 acetyl-CoA acetyltran 62.6 15 0.00033 33.5 5.2 70 54-129 296-372 (397)
234 PLN03171 chalcone synthase-lik 61.9 43 0.00094 30.6 8.0 88 49-143 275-381 (399)
235 PRK07103 polyketide beta-ketoa 61.8 22 0.00047 32.6 6.0 29 55-84 283-312 (410)
236 TIGR01796 CM_mono_aroH monofun 61.7 22 0.00048 26.7 4.9 59 49-111 12-75 (117)
237 TIGR03725 bact_YeaZ universal 59.1 9.4 0.0002 31.4 2.9 34 48-82 30-63 (202)
238 PRK08131 acetyl-CoA acetyltran 59.1 25 0.00054 32.2 5.9 42 54-101 297-338 (401)
239 PRK14878 UGMP family protein; 58.5 33 0.00071 30.5 6.4 46 54-101 47-97 (323)
240 PLN03170 chalcone synthase; Pr 57.1 30 0.00064 31.8 6.0 47 53-105 281-327 (401)
241 PRK07801 acetyl-CoA acetyltran 55.6 45 0.00097 30.2 6.9 42 55-102 282-323 (382)
242 PRK08170 acetyl-CoA acetyltran 55.2 40 0.00087 31.1 6.6 25 55-80 309-333 (426)
243 COG0533 QRI7 Metal-dependent p 54.9 18 0.00039 32.4 4.1 84 53-146 52-138 (342)
244 PRK09268 acetyl-CoA acetyltran 54.6 66 0.0014 29.8 7.9 28 54-82 310-337 (427)
245 TIGR03722 arch_KAE1 universal 54.4 31 0.00066 30.6 5.5 27 54-81 48-74 (322)
246 PLN02854 3-ketoacyl-CoA syntha 54.2 79 0.0017 30.2 8.4 42 55-102 387-434 (521)
247 PF07736 CM_1: Chorismate muta 53.9 20 0.00043 27.1 3.6 56 50-111 13-75 (118)
248 TIGR00329 gcp_kae1 metallohydr 53.7 14 0.0003 32.5 3.2 31 51-82 48-78 (305)
249 PLN03173 chalcone synthase; Pr 52.5 72 0.0016 29.1 7.8 46 54-105 278-323 (391)
250 cd02185 AroH Chorismate mutase 52.1 41 0.00088 25.3 4.9 60 49-111 12-75 (117)
251 PF00814 Peptidase_M22: Glycop 50.5 8.1 0.00017 33.4 1.2 30 52-82 30-59 (268)
252 KOG2708|consensus 47.0 22 0.00048 30.2 3.2 85 54-147 52-137 (336)
253 TIGR03723 bact_gcp putative gl 46.2 22 0.00047 31.5 3.2 31 51-82 49-79 (314)
254 TIGR02446 FadI fatty oxidation 46.1 43 0.00094 31.0 5.3 25 56-81 314-338 (430)
255 PRK08304 stage V sporulation p 46.1 1E+02 0.0023 27.6 7.4 89 52-146 204-312 (337)
256 PTZ00340 O-sialoglycoprotein e 44.9 25 0.00055 31.6 3.5 28 52-80 50-77 (345)
257 TIGR01991 HscA Fe-S protein as 42.5 1.3E+02 0.0028 29.2 8.1 48 52-102 292-339 (599)
258 COG4126 Hydantoin racemase [Am 42.3 83 0.0018 26.5 5.8 63 49-131 156-218 (230)
259 KOG2707|consensus 42.3 49 0.0011 29.9 4.7 44 56-101 87-135 (405)
260 PRK05183 hscA chaperone protei 41.5 1.3E+02 0.0027 29.4 7.9 47 53-102 309-355 (616)
261 KOG1406|consensus 39.9 39 0.00085 29.4 3.7 32 51-83 270-301 (408)
262 PRK12342 hypothetical protein; 37.7 90 0.0019 26.8 5.6 29 74-102 110-138 (254)
263 TIGR03285 methan_mark_14 putat 36.7 35 0.00075 31.0 3.0 33 48-81 62-94 (445)
264 PRK09585 anmK anhydro-N-acetyl 36.4 73 0.0016 28.9 5.1 51 51-102 69-126 (365)
265 PRK03359 putative electron tra 36.3 59 0.0013 28.0 4.3 38 73-110 112-149 (256)
266 PF07451 SpoVAD: Stage V sporu 36.3 93 0.002 27.6 5.5 87 52-146 199-307 (329)
267 PLN03172 chalcone synthase fam 36.0 1.6E+02 0.0035 26.9 7.4 45 56-106 280-324 (393)
268 TIGR02813 omega_3_PfaA polyket 34.6 85 0.0019 36.0 6.1 77 55-133 317-403 (2582)
269 PRK13410 molecular chaperone D 33.8 1.5E+02 0.0033 29.1 7.2 47 52-101 308-354 (668)
270 PRK08439 3-oxoacyl-(acyl carri 33.6 1.9E+02 0.0042 26.3 7.5 77 53-133 274-357 (406)
271 PTZ00186 heat shock 70 kDa pre 33.4 1.6E+02 0.0034 29.0 7.2 46 53-101 334-379 (657)
272 COG2086 FixA Electron transfer 33.3 71 0.0015 27.6 4.3 31 72-102 110-140 (260)
273 KOG1794|consensus 33.2 2.2E+02 0.0047 25.3 7.2 127 42-181 36-165 (336)
274 PF14574 DUF4445: Domain of un 33.1 53 0.0012 30.3 3.7 66 51-121 302-374 (412)
275 PLN03184 chloroplast Hsp70; Pr 32.7 1.3E+02 0.0028 29.7 6.5 48 52-102 345-392 (673)
276 PF04430 DUF498: Protein of un 32.4 32 0.00069 25.3 1.8 44 72-117 52-95 (110)
277 TIGR02845 spore_V_AD stage V s 31.5 2.4E+02 0.0052 25.3 7.3 89 52-146 198-305 (327)
278 COG3737 Uncharacterized conser 31.2 1.2E+02 0.0027 22.9 4.7 61 50-117 51-111 (127)
279 PRK00994 F420-dependent methyl 30.9 3.5E+02 0.0075 23.3 8.0 91 36-146 29-120 (277)
280 cd05125 Mth938_2P1-like Mth938 30.5 83 0.0018 23.5 3.8 62 49-117 35-96 (114)
281 PRK03673 hypothetical protein; 30.3 4.3E+02 0.0094 24.3 9.1 85 1-101 1-88 (396)
282 PF05378 Hydant_A_N: Hydantoin 28.5 94 0.002 24.9 4.1 34 49-83 33-66 (176)
283 COG0825 AccA Acetyl-CoA carbox 28.4 90 0.0019 27.5 4.0 57 90-149 176-232 (317)
284 cd05560 Xcc1710_like Xcc1710_l 28.3 79 0.0017 23.3 3.3 58 51-117 37-94 (109)
285 COG4401 AroH Chorismate mutase 27.7 1E+02 0.0023 23.0 3.7 60 54-116 19-82 (125)
286 PRK12404 stage V sporulation p 27.5 3.1E+02 0.0067 24.6 7.3 89 52-146 202-310 (334)
287 PRK09605 bifunctional UGMP fam 27.5 56 0.0012 31.0 3.0 25 55-80 52-76 (535)
288 PF09887 DUF2114: Uncharacteri 27.4 70 0.0015 29.2 3.3 33 48-81 64-97 (448)
289 cd00248 Mth938-like Mth938-lik 26.5 69 0.0015 23.5 2.7 59 51-117 36-94 (109)
290 PRK11867 2-oxoglutarate ferred 25.4 2.9E+02 0.0064 24.0 6.9 20 54-74 27-46 (286)
291 CHL00094 dnaK heat shock prote 25.1 1.4E+02 0.003 29.1 5.2 47 52-101 308-354 (621)
292 PTZ00009 heat shock 70 kDa pro 24.4 1.9E+02 0.004 28.4 6.0 44 55-101 315-358 (653)
293 TIGR02177 PorB_KorB 2-oxoacid: 24.4 3.7E+02 0.008 23.5 7.3 20 54-74 11-30 (287)
294 PRK00290 dnaK molecular chaper 24.2 2.1E+02 0.0045 27.9 6.2 47 53-102 307-353 (627)
295 COG0443 DnaK Molecular chapero 24.1 2.2E+02 0.0047 27.6 6.3 69 52-126 289-357 (579)
296 PRK13411 molecular chaperone D 23.3 2.2E+02 0.0048 27.9 6.3 46 53-101 308-353 (653)
297 PTZ00400 DnaK-type molecular c 23.1 1.2E+02 0.0025 29.9 4.3 44 55-101 350-393 (663)
298 TIGR02350 prok_dnaK chaperone 22.8 1.2E+02 0.0026 29.2 4.3 46 53-101 305-350 (595)
299 PRK00768 nadE NAD synthetase; 21.6 5.3E+02 0.012 22.3 9.5 74 89-177 89-181 (268)
300 PF03702 UPF0075: Uncharacteri 21.0 1.7E+02 0.0036 26.6 4.6 51 51-102 66-125 (364)
301 KOG1391|consensus 20.7 1.1E+02 0.0024 26.6 3.1 41 56-102 296-336 (396)
302 COG1908 FrhD Coenzyme F420-red 20.1 82 0.0018 23.9 2.0 34 53-87 77-110 (132)
No 1
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=100.00 E-value=4.1e-46 Score=325.38 Aligned_cols=232 Identities=17% Similarity=0.172 Sum_probs=210.7
Q ss_pred CceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEE
Q psy2407 1 MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIIT 79 (245)
Q Consensus 1 m~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~ 79 (245)
||+++|.++|.|+|++.++|+++++..+.+++||. ++||++||++.++|+..+|+++|+++||+++ |++|+|||+||+
T Consensus 1 ~~~a~i~g~G~~lP~~~vtn~d~e~~~~tsdewI~~rtGir~R~~a~~~e~~s~la~~Aa~~AL~~A-gi~~~dIDlII~ 79 (323)
T COG0332 1 MMNAKILGIGSYLPERVVTNADLEKRVDTSDEWIETRTGIRERRIAADDETTSDLAVEAARKALEDA-GISPDDIDLIIV 79 (323)
T ss_pred CCcceEEEEEeecCCcccChHHHHhccCCCcceeeeecCCceeeecCCCccHHHHHHHHHHHHHHHc-CCCHHHCCEEEE
Confidence 78999999999999999999999999999999998 9999999999999999999999999999997 999999999999
Q ss_pred EeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccccccc
Q psy2407 80 CSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTM 159 (245)
Q Consensus 80 ~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~ 159 (245)
+|+||++.+|++|+.||+.||+. ++++||++.+|+|+++||.+|..+|++|.+ ++||||++|++|+.++++| |.+
T Consensus 80 aT~tpd~~~Ps~A~~vq~~LG~~-~~~afDl~aaCsgf~yaL~~A~~~i~sG~~--k~vLVVg~e~~S~~ld~~d--R~t 154 (323)
T COG0332 80 ATSTPDHLFPSTACLVQARLGLG-GAPAFDLQAACSGFLYALSVADGLIRSGGY--KNVLVVGAETLSRILDWTD--RDT 154 (323)
T ss_pred EcCCcccCCChHHHHHHHHhCCC-CcceeechhhhHHHHHHHHHHHHHHHcCCC--CEEEEEehhHhhccCCHhh--ccc
Confidence 99999999999999999999995 699999999999999999999999999988 9999999999999999988 554
Q ss_pred ccccccccccceeEEEEecCCC---CeeEEeeccccccccccccccCCCC--------CCCcccchhhHHHHHHHHHHHH
Q psy2407 160 EWAFFEPSGGAGAVAMLISDKP---EIFQFDIGSNGYYSFEVMDTCRPIP--------DSEAGNADLSLLSYLDCCAQSF 228 (245)
Q Consensus 160 ~~~~~~~~~GDGAaA~ll~~~~---~i~~~~~~~~g~~~~~~~~~~~p~~--------~~~~~~g~~~~~~~~~~~~~~~ 228 (245)
..+|||||+|+||++.+ +++.+.+++||++.+.+........ ....|+|+..|+..++.+.++.
T Consensus 155 -----~vlFgDGAgAvvl~~~~~~~~i~~~~l~sdg~~~~~l~~~~~~~~~~~~~~~~~~~~m~Gr~vfk~av~~~~~~~ 229 (323)
T COG0332 155 -----CVLFGDGAGAVVLEATEDDNGILDTDLGSDGSQGDLLYLPGGGSATPKEESGGGLLVMDGREVFKFAVRAMPKAI 229 (323)
T ss_pred -----eEEEcCCceEEEEecCCCCcCeeeeeeeccccCCCeeeccCCCCccccccccccceeeccHHHHHHHHHHHHHHH
Confidence 35799999999999763 7999999999998865443222111 1125999999999999999999
Q ss_pred HHHHHHhcchhhhhc
Q psy2407 229 KEYKKRVQYKIIVYN 243 (245)
Q Consensus 229 ~~~~~~~~~~~~~~~ 243 (245)
++.+++.+++++++.
T Consensus 230 ~~~L~~~~l~~~dId 244 (323)
T COG0332 230 EEVLEKAGLTPEDID 244 (323)
T ss_pred HHHHHHcCCCHHHCC
Confidence 999999999988653
No 2
>PLN02577 hydroxymethylglutaryl-CoA synthase
Probab=100.00 E-value=1.5e-40 Score=303.57 Aligned_cols=226 Identities=26% Similarity=0.355 Sum_probs=197.7
Q ss_pred ceeEEeEEeEecCCceecHHHHHHHcCCChHHHhhccceeeee--cCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEE
Q psy2407 2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSV--SLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIIT 79 (245)
Q Consensus 2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~~~Gi~~r~~--~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~ 79 (245)
|+++|.++|.|+|+++|+|+++++.+|.+++|+ ++||.+|++ +.++|++.+||++|+++||+++ |+++++||+||+
T Consensus 3 ~~vgI~gig~Y~P~~~v~n~eLa~~~g~~~~~~-~~GI~~r~~ava~~~Ed~~tmA~~AA~~aL~~a-gid~~~Idlliv 80 (459)
T PLN02577 3 KNVGILAMEVYFPPTCVQQEALEAHDGVSKGKY-TIGLGQDCMAFCTDVEDVISMSLTVVKSLLEKY-NIDPKQIGRLEV 80 (459)
T ss_pred CccEEEEEEEeCCCeEEcHHHHHHHhCCCHHHH-hhccceeEeccCCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEE
Confidence 579999999999999999999999999999998 578877775 4689999999999999999997 999999999999
Q ss_pred EeccCCCCCCcHHHHHH---HHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccc
Q psy2407 80 CSESGIDFGKSMSTYIH---HYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNE 156 (245)
Q Consensus 80 ~t~~~~~~~p~~a~~l~---~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~ 156 (245)
+|+||++..|+++.+|+ +.||. +++.+||++++|+||+.||.+|..+|++|.++.++||||++|..+...++
T Consensus 81 aTeT~~d~~ps~A~~v~~ll~~LG~-~~~~afDi~~AC~G~~~AL~~A~~~i~sg~~~~~~aLVV~aD~a~~~~~~---- 155 (459)
T PLN02577 81 GSETVIDKSKSIKTFLMQLFEESGN-TDIEGVDSTNACYGGTAALLNCVNWVESSSWDGRYGLVVAADSAVYAEGP---- 155 (459)
T ss_pred EcCCCCCCCCchHHHHHHHHHHhCC-CCcEEeehhhhhHHHHHHHHHHHHHHHcCCCCCCeEEEEEechhhccCCC----
Confidence 99999999999999886 67787 58999999999999999999999999998544699999999999877542
Q ss_pred cccccccccccccceeEEEEecCCCCeeEEeeccccccccccccccCCCCCC--CcccchhhHHHHHHHHHHHHHHHHHH
Q psy2407 157 LTMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDS--EAGNADLSLLSYLDCCAQSFKEYKKR 234 (245)
Q Consensus 157 ~~~~~~~~~~~~GDGAaA~ll~~~~~i~~~~~~~~g~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~ 234 (245)
.++++||||+|+||++++. +.+.....|.+..+.+|||+|.... +.|+|++++.+|++++++++++++++
T Consensus 156 -------~e~t~GdGA~A~lv~~~~~-~~l~~~~~g~~~~~~~Df~rP~~~~~~~~vdG~~s~~~yl~~~~~~~~~~~~k 227 (459)
T PLN02577 156 -------ARPTGGAGAVAMLVGPNAP-IVFESKYRGSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYKRFCEK 227 (459)
T ss_pred -------CCCCCCcceEEEEEccCCC-ceeecccccccCcccchhcccCCCCCceEEcchHHHHHHHHHHHHHHHHHHHH
Confidence 1456899999999998765 2344344567778899999999763 67999999999999999999999999
Q ss_pred h------cchhhhh
Q psy2407 235 V------QYKIIVY 242 (245)
Q Consensus 235 ~------~~~~~~~ 242 (245)
. |+++.++
T Consensus 228 ~~~~~~~g~~~~d~ 241 (459)
T PLN02577 228 YEKLEGKQFSISDA 241 (459)
T ss_pred hhcccccCCCHHHc
Confidence 8 6666654
No 3
>TIGR01833 HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade. Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes.
Probab=100.00 E-value=2.7e-39 Score=294.95 Aligned_cols=219 Identities=32% Similarity=0.452 Sum_probs=191.5
Q ss_pred eeEEeEEeEecCCceecHHHHHHHcCCChHHHhhccceeee--ecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407 3 KVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKS--VSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC 80 (245)
Q Consensus 3 ~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~~~Gi~~r~--~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~ 80 (245)
+|+|.+++.|+|+++|+++++++..|.+++|+ .+||.+|+ ++.++|++.+|+++|++++|+++ ++++++||+||++
T Consensus 1 ~vgI~~ig~y~P~~~v~~~eLa~~~g~~~~k~-~~GI~~rr~av~~~~Ed~~tma~~AA~~lL~~a-~id~~~Id~Liv~ 78 (454)
T TIGR01833 1 DVGILALEIYFPSQYVDQAELEKYDGVSAGKY-TIGLGQTKMGFCTDREDINSLCLTVVSKLMERY-NIDYNQIGRLEVG 78 (454)
T ss_pred CcEEEEEEEeCCCeEEcHHHHHHhcCCCHHHh-eechhheecccCCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEE
Confidence 58999999999999999999999999998887 47777777 67889999999999999999997 9999999999999
Q ss_pred eccCCCCCCcHHHHHHHHc---CCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccccc
Q psy2407 81 SESGIDFGKSMSTYIHHYL---GLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNEL 157 (245)
Q Consensus 81 t~~~~~~~p~~a~~l~~~L---Gl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~ 157 (245)
|.++++..|+.+.+|++.| |+ +++.+||++++|+|++.||.+|..+|+++.++.++||||++|+.... + .
T Consensus 79 TeS~~d~sps~a~~v~~lL~~lG~-~~~~~fDi~~AC~G~t~AL~~A~~~i~s~~~~~~~aLVV~sDia~y~----~--~ 151 (454)
T TIGR01833 79 TETIIDKSKSVKTVLMQLFEESGN-TDVEGIDTTNACYGGTAALFNAINWIESSSWDGRYALVVAGDIAVYA----K--G 151 (454)
T ss_pred CCCCCCCCCchHHHHHHHHHhcCC-CCceEEeccccchhHHHHHHHHHHHHHcCCcCCCeEEEEEecccccc----C--C
Confidence 9999999999999999855 45 68999999999999999999999999998545699999999995432 1 0
Q ss_pred ccccccccccccceeEEEEecCCCCeeEEeeccccccccccccccCCCCCC--CcccchhhHHHHHHHHHHHHHHHHHHh
Q psy2407 158 TMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDS--EAGNADLSLLSYLDCCAQSFKEYKKRV 235 (245)
Q Consensus 158 ~~~~~~~~~~~GDGAaA~ll~~~~~i~~~~~~~~g~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~ 235 (245)
. ..+++||||+|+||++++. +.+..+..+.|+.+++|||||..+. |.++|++|+.||+++++++|+.|.++.
T Consensus 152 --~---~~~t~GaGAvAmLv~~~~~-~~~~~~~~~~~~~~~~DF~rP~~~~~~p~vdg~~S~~~Yl~a~~~~y~~y~~~~ 225 (454)
T TIGR01833 152 --N---ARPTGGAGAVAMLIGPNAP-IVFERGLRGSHMQHAYDFYKPDLASEYPVVDGKLSIQCYLSALDRCYKSYCKKI 225 (454)
T ss_pred --C---eeeccccceEEEEeccCcc-ceecCccceEEEeecccccCCCCCCcccccCCccCHHHHHHHHHHHHHHHHHHH
Confidence 1 2457999999999999887 4455543578889999999998854 579999999999999999999998775
Q ss_pred c
Q psy2407 236 Q 236 (245)
Q Consensus 236 ~ 236 (245)
+
T Consensus 226 ~ 226 (454)
T TIGR01833 226 E 226 (454)
T ss_pred H
Confidence 4
No 4
>TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade. This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event.
Probab=100.00 E-value=1.2e-38 Score=287.57 Aligned_cols=224 Identities=36% Similarity=0.577 Sum_probs=199.0
Q ss_pred eEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEec
Q psy2407 4 VGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSE 82 (245)
Q Consensus 4 ~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~ 82 (245)
|+|.+++.|+|+++++++++++..|.+++|+. ++|+++|+++.++|++.+|+++|+++||+++ ++++||+|+++|+
T Consensus 1 iGI~~i~~y~P~~~v~~~ela~~~g~~~~~~~~g~G~~~~~~~~~~ed~~~la~~Aa~~aL~~a---~~~~Id~li~~t~ 77 (379)
T TIGR01835 1 IGIDKISFFTPQNYLDMTALAEARGVDPEKFHIGIGQKKMAVPPIDEDIVTMAASAAKPILDRN---DKQKIDMVIFGTE 77 (379)
T ss_pred CCEeEEEEECCCEEeeHHHHHHHhCCCHHHHHhhcCceEEeeCCCCCCHHHHHHHHHHHHHHhC---CHhhCCEEEEEeC
Confidence 58999999999999999999999999999987 8999999999999999999999999999994 7999999999999
Q ss_pred cCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccccc
Q psy2407 83 SGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWA 162 (245)
Q Consensus 83 ~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~ 162 (245)
++++..|+.+.+|++.||++++++++|++++|+|++.||++|..+|++|.. ++||||++|....... . +
T Consensus 78 s~~~~~~s~a~~v~~~Lgl~~~~~~~dv~~aC~gg~~aL~~A~~~i~s~~~--~~aLVv~~D~a~~~~~--~-----~-- 146 (379)
T TIGR01835 78 SGIDQSKAAAVYVHGLLGLQPFCRSFELKQACYGATAALQMAKGHVALSPD--RKVLVIASDIAKYGLE--S-----P-- 146 (379)
T ss_pred CCCCCCCCHHHHHHHHhCCCCCceEEEeccccHHHHHHHHHHHHHHHcCCC--CeEEEEEeehhhcccC--C-----C--
Confidence 999889999999999999976799999999999999999999999999955 9999999999654321 1 1
Q ss_pred cccccccceeEEEEecCCCCeeEEeeccccccccccccccCCCCCC-CcccchhhHHHHHHHHHHHHHHHHHHhcchhhh
Q psy2407 163 FFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIV 241 (245)
Q Consensus 163 ~~~~~~GDGAaA~ll~~~~~i~~~~~~~~g~~~~~~~~~~~p~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (245)
...+|||||+|+||+++++++.+...+ +.+.+...|||+|.+.. +.++|++++.+|++.+.+++++++++.|+++.+
T Consensus 147 -~~~~~GdGA~A~Ll~~~~~i~~~~~~~-~~~t~~~~df~~p~~~~~~~v~g~~s~~~y~~~~~~~~~~~l~~~g~~~~d 224 (379)
T TIGR01835 147 -GEPTQGAGAVAMLVSADPKLLAINEDS-VLYTDDIMDFWRPNYSTTALVDGQYSNEQYLNAFENAWNDYAKRTGLSLAD 224 (379)
T ss_pred -CCccccCccEEEEEecCCCeeEEeccc-eeeecCCCCccCCCCCCceeECcHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 246899999999999988877665432 35566778999998754 569999999999999999999999999999876
Q ss_pred hc
Q psy2407 242 YN 243 (245)
Q Consensus 242 ~~ 243 (245)
+.
T Consensus 225 id 226 (379)
T TIGR01835 225 FA 226 (379)
T ss_pred cC
Confidence 53
No 5
>COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]
Probab=100.00 E-value=9.9e-39 Score=280.36 Aligned_cols=228 Identities=30% Similarity=0.395 Sum_probs=210.0
Q ss_pred ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407 2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC 80 (245)
Q Consensus 2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~ 80 (245)
|+++|.+++.|+|..+|+.+|+++.++.+++++. .+|+.++++..++|++.+|+++|++++|.++ ++|+++|+.|+++
T Consensus 1 ~~iGI~~~g~y~p~~~i~~~ela~~~g~d~~k~~~gl~~~e~sv~~~~ED~vTmaveAA~~~l~r~-~~D~~~Ig~v~vg 79 (377)
T COG3425 1 MMIGIVGIGAYIPRYRIKLEELARAWGVDPEKIKKGLGVEEKSVPPWDEDAVTMAVEAARNALKRA-DIDPSKIGAVIVG 79 (377)
T ss_pred CccccceEEEeccceEeeHHHHHhhcCCChHHhhhccccccccCCCCchhHHHHHHHHHHHHHhcc-CCCHHHCceEEEe
Confidence 6899999999999999999999999999999998 7899999999999999999999999999996 9999999999999
Q ss_pred eccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccc
Q psy2407 81 SESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTME 160 (245)
Q Consensus 81 t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~ 160 (245)
|.++.+...+++.+|++.||+++++.++|+.++|.+++.||+.|..++.+|.. +++|||++|+...... +
T Consensus 80 TES~~d~~K~~at~v~~~lg~~~~~~~~d~~~AC~agT~aL~~a~~~v~s~~~--~~~LvI~sD~a~~~~~--~------ 149 (377)
T COG3425 80 SESGPDAVKPTATIVAEALGLNPSARAADVEFACYAGTAALQAAIGWVESGMI--SYGLVIGADTAQYAPG--D------ 149 (377)
T ss_pred cCCCcccccchHHHHHHHhCCCCceehhhHHHHHHHHHHHHHHHHHHHHcCCc--cceEEEeehhhccCCC--c------
Confidence 99999999999999999999998999999999999999999999999999976 9999999999876531 1
Q ss_pred cccccccccceeEEEEecCCCCeeEEeeccccccccccccccCCCCC-CCcccchhhHHHHHHHHHHHHHHHHHHhcchh
Q psy2407 161 WAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPD-SEAGNADLSLLSYLDCCAQSFKEYKKRVQYKI 239 (245)
Q Consensus 161 ~~~~~~~~GDGAaA~ll~~~~~i~~~~~~~~g~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (245)
..+++.|+||+|+|+++++.+ ...+...++|..+.+|||||.+. .|.++|+++..+|++.+++++++|+++.|+++
T Consensus 150 --~~E~t~GAGavA~lIg~n~~~-~a~~~~~~syt~d~~DFwRp~~~~yp~~dg~~s~~~Y~~~~~~a~~~~~~k~gls~ 226 (377)
T COG3425 150 --ALEYTAGAGAVAFLIGKNPPI-VAEFEGTGSYTTDTPDFWRPDGQPYPYVDGRFSEPAYFKHVENAAKGYMEKTGLSP 226 (377)
T ss_pred --ccCccCCCceEEEEEccCCCe-EEEecCceEEecCCCcccccCCCcccccCceecHHHHHHHHHHHHHHHHHHhCCCh
Confidence 136789999999999998654 45556789999999999999998 46799999999999999999999999999998
Q ss_pred hhhc
Q psy2407 240 IVYN 243 (245)
Q Consensus 240 ~~~~ 243 (245)
.+|.
T Consensus 227 ~dfd 230 (377)
T COG3425 227 DDFD 230 (377)
T ss_pred hhhC
Confidence 8664
No 6
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=100.00 E-value=4.8e-38 Score=278.49 Aligned_cols=229 Identities=15% Similarity=0.137 Sum_probs=197.0
Q ss_pred eeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEe
Q psy2407 3 KVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCS 81 (245)
Q Consensus 3 ~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t 81 (245)
.++|.++|+|+|+++++|+++.+.++.+++++. ++|+++||++.+++++.+|+++|+++||+++ |++++|||+||++|
T Consensus 3 ~~~I~~~g~~lP~~~v~~~~~~~~~~~~~~~i~~~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a-g~~~~~Id~li~~t 81 (326)
T PRK05963 3 SSRIAGFGHAVPDRRVENAEIEAQLGLETGWIERRTGIRCRRWAAPDETLSDLAASAGDMALSDA-GIERSDIALTLLAT 81 (326)
T ss_pred ccEEEEEEEECCCCeecHHHHHHHcCCCHHHhhhccCCeEEEEcCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEC
Confidence 579999999999999999999999999988887 8999999999899999999999999999997 99999999999999
Q ss_pred ccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccccccccc
Q psy2407 82 ESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEW 161 (245)
Q Consensus 82 ~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~ 161 (245)
++|++..|+.+.+|+++||++ ++++||++++|+|++.||++|..+++++ . +++|||++|.++..+++++ +.
T Consensus 82 ~~~d~~~p~~a~~v~~~Lg~~-~~~~~di~~~C~g~~~aL~~A~~~l~~~-~--~~aLVv~~d~~s~~~~~~~--~~--- 152 (326)
T PRK05963 82 STPDHLLPPSAPLLAHRLGLQ-NSGAIDLAGACAGFLYALVLADGFVRAQ-G--KPVLVVAANILSRRINMAE--RA--- 152 (326)
T ss_pred CCCCCCCCcHHHHHHHHhCCC-CCceeeccchhhHHHHHHHHHHHHHHcC-C--CeEEEEEechhhccCCccc--cC---
Confidence 999999999999999999995 7899999999999999999999999987 3 8999999999998887655 22
Q ss_pred ccccccccceeEEEEecCCC----CeeEEeecccccccccccc----ccCCC---CCC-----CcccchhhHHHHHHHHH
Q psy2407 162 AFFEPSGGAGAVAMLISDKP----EIFQFDIGSNGYYSFEVMD----TCRPI---PDS-----EAGNADLSLLSYLDCCA 225 (245)
Q Consensus 162 ~~~~~~~GDGAaA~ll~~~~----~i~~~~~~~~g~~~~~~~~----~~~p~---~~~-----~~~~g~~~~~~~~~~~~ 225 (245)
...+|||||+|+||++.+ +++...+.++|++++.+.. ...|. .+. ..++|+..+..+++.+.
T Consensus 153 --~~~lfGDgA~A~ll~~~~~~~~~~l~~~~~t~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (326)
T PRK05963 153 --SAVLFADAAGAVVLAPSAKANSGVLGSQLISDGSHYDLIKIPAGGSARPFAPERDASEFLMTMQDGRAVFTEAVRMMS 230 (326)
T ss_pred --ceEEEeecceEEEEEecCCCCCceEEEEEEEcCCCCCeEEeCCCCcCCCCcccccccccceEecCCHHHHHHHHHHHH
Confidence 145799999999998643 6778888888887764321 11121 111 12477888888999999
Q ss_pred HHHHHHHHHhcchhhhhc
Q psy2407 226 QSFKEYKKRVQYKIIVYN 243 (245)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~ 243 (245)
+++++++++.|+++.++.
T Consensus 231 ~~~~~~L~~~gl~~~did 248 (326)
T PRK05963 231 GASQNVLASAAMTPQDID 248 (326)
T ss_pred HHHHHHHHHcCCCHHHCC
Confidence 999999999999988764
No 7
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=100.00 E-value=4.2e-37 Score=275.12 Aligned_cols=230 Identities=24% Similarity=0.257 Sum_probs=189.4
Q ss_pred ceeEEeEEeEecCCceecHHHHHH-HcCCCh---HHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCE
Q psy2407 2 IKVGIEAINLYGGSVFIDVIELAK-YRKLDT---VRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIEL 76 (245)
Q Consensus 2 ~~~~I~~i~~~lP~~~v~~~~~~~-~~~~~~---~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~ 76 (245)
++++|.++++|+|+++++|+++.. .++.+. +++. ++||++||++.+++++.+|+++|+++||+++ |++++|||+
T Consensus 6 ~~~~I~~~g~~lP~~~v~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~e~~~~la~~Aa~~aL~~a-~~~~~dId~ 84 (353)
T PRK12880 6 DKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKKVIGLNTRYICDENTCVSDLGKHAANTLLQGL-NIDKNSLDA 84 (353)
T ss_pred cccEEEEEEEECCCeEecHHHHHHHhcCcchhhhhhhhhccCceEEEeCCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCE
Confidence 468999999999999999997544 443222 2344 6899999999899999999999999999997 999999999
Q ss_pred EEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccc
Q psy2407 77 IITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNE 156 (245)
Q Consensus 77 li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~ 156 (245)
||++|++|++..|+++.+|+++||+++++++||++++|+|+++||++|..++++|.. + +|||++|..|..+++.+
T Consensus 85 lI~~t~t~d~~~P~~a~~v~~~Lg~~~~~~~~di~~~C~g~~~aL~~A~~~i~~~~~--~-~LVv~~e~~S~~~~~~d-- 159 (353)
T PRK12880 85 LIVVTQSPDFFMPSTACYLHQLLNLSSKTIAFDLGQACAGYLYGLFVAHSLIQSGLG--K-ILLICGDTLSKFIHPKN-- 159 (353)
T ss_pred EEEEcCCCCCCCCcHHHHHHHHhCCCCCceEEehhhhhHHHHHHHHHHHHHHHcCCC--C-EEEEEehhhhccCCccc--
Confidence 999999999999999999999999976889999999999999999999999999954 8 99999999999998766
Q ss_pred cccccccccccccceeEEEEecCCC-CeeEEeecccccccccccc----ccCCCC-------------CC----Ccccch
Q psy2407 157 LTMEWAFFEPSGGAGAVAMLISDKP-EIFQFDIGSNGYYSFEVMD----TCRPIP-------------DS----EAGNAD 214 (245)
Q Consensus 157 ~~~~~~~~~~~~GDGAaA~ll~~~~-~i~~~~~~~~g~~~~~~~~----~~~p~~-------------~~----~~~~g~ 214 (245)
+.+ ..+|||||+|+||++++ ....+.+.++|++++.+.. ...|.. .. -.|+|+
T Consensus 160 ~~~-----~~lFGDGAaA~vl~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 234 (353)
T PRK12880 160 MNL-----APIFGDGVSATLIEKTDFNEAFFELGSDGKYFDKLIIPKGAMRIPKADIFNDDSLMQTEEFRQLENLYMDGA 234 (353)
T ss_pred CCc-----eeeecccceEEEEEecCCCCceEEEEecCCCCCeEEecCCCcCCCccccccccccccccccccCceEEEcCH
Confidence 222 46899999999998643 1112466788887765421 101110 00 138899
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhhh
Q psy2407 215 LSLLSYLDCCAQSFKEYKKRVQYKIIVY 242 (245)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (245)
..+..+++.+.+++++++++.|+++.+.
T Consensus 235 ~v~~~~~~~~~~~i~~~L~~~gl~~~di 262 (353)
T PRK12880 235 NIFNMALECEPKSFKEILEFSKVDEKDI 262 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHC
Confidence 9999999999999999999999987754
No 8
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=100.00 E-value=1.4e-35 Score=263.06 Aligned_cols=231 Identities=16% Similarity=0.115 Sum_probs=193.4
Q ss_pred ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407 2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC 80 (245)
Q Consensus 2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~ 80 (245)
++++|.++++|+|+++++|+++.+..+.+.+++. ++||++||++. +++..+|+.+|+++||+++ |++++|||+||++
T Consensus 3 ~~~~I~~~g~~lP~~~v~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~-~~~~~~la~~Aa~~aL~~a-g~~~~dId~li~~ 80 (329)
T PRK07204 3 RYISIKGIGTYLPKRKVDSLELDKKLDLPEGWVLKKSGVKTRHFVD-GETSSYMGAEAAKKAVEDA-KLTLDDIDCIICA 80 (329)
T ss_pred CCcEEEEEEEeCCCceecHHHHHHhhCCCHhHhhhccCceEEeecC-CCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEE
Confidence 4689999999999999999999999998888887 89999999976 8999999999999999997 9999999999999
Q ss_pred eccCCCCCCcHHHHHHHHcCCCC-CcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccccccc
Q psy2407 81 SESGIDFGKSMSTYIHHYLGLNR-NCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTM 159 (245)
Q Consensus 81 t~~~~~~~p~~a~~l~~~LGl~~-~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~ 159 (245)
++++++..|+.+.+|+++||+++ .+++++++++|+|++.||.+|..++++|.+ +++|||++|.++..+++.+ +.
T Consensus 81 ~~~~~~~~p~~a~~v~~~lgl~~~~~~~~~v~~~C~~~~~al~~a~~~l~~g~~--~~~Lvv~~e~~s~~~~~~~--~~- 155 (329)
T PRK07204 81 SGTIQQAIPCTASLIQEQLGLQHSGIPCFDINSTCLSFITALDTISYAIECGRY--KRVLIISSEISSVGLNWGQ--NE- 155 (329)
T ss_pred CCCCCCCCccHHHHHHHHhCCCCCCceEEEccchhHHHHHHHHHHHHHHHCCCC--CEEEEEEeccccCCCCccc--Cc-
Confidence 99998888999999999999964 379999999999999999999999999966 9999999999988766543 11
Q ss_pred ccccccccccceeEEEEecCCC---CeeEEeecccccccccc--cc---------ccCCCCCC--CcccchhhHHHHHHH
Q psy2407 160 EWAFFEPSGGAGAVAMLISDKP---EIFQFDIGSNGYYSFEV--MD---------TCRPIPDS--EAGNADLSLLSYLDC 223 (245)
Q Consensus 160 ~~~~~~~~~GDGAaA~ll~~~~---~i~~~~~~~~g~~~~~~--~~---------~~~p~~~~--~~~~g~~~~~~~~~~ 223 (245)
...+|||||+|+||++++ +++...+.+++.+++.. +. .+.+.... ..++|+..++.+.+.
T Consensus 156 ----~~~lfGDGAaA~ll~~~~~~~~il~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (329)
T PRK07204 156 ----SCILFGDGAAAVVITKGDHSSRILASHMETYSSGAHLSEIRGGGTMIHPREYSEERKEDFLFDMNGRAIFKLSSKY 231 (329)
T ss_pred ----ceEEEecccEEEEEEEcCCCCcEEEEEEEEecCCCCceEEecCCcCCCCcccccccccCceEEECCHHHHHHHHHH
Confidence 135799999999999753 67777777777654421 10 11111111 136778888888999
Q ss_pred HHHHHHHHHHHhcchhhhhc
Q psy2407 224 CAQSFKEYKKRVQYKIIVYN 243 (245)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~ 243 (245)
+.+++++++++.|+++.++.
T Consensus 232 ~~~~i~~~L~~~gl~~~did 251 (329)
T PRK07204 232 LMKFIDKLLMDAGYTLADID 251 (329)
T ss_pred HHHHHHHHHHHcCCCHHHCC
Confidence 99999999999999998764
No 9
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=100.00 E-value=2e-35 Score=261.92 Aligned_cols=230 Identities=15% Similarity=0.129 Sum_probs=194.0
Q ss_pred ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407 2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC 80 (245)
Q Consensus 2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~ 80 (245)
|.++|.++|+|+|+++|+|+|+++.++.+..++. ++||++|+++.++++..+|+.+|+++||+++ |++++|||.||++
T Consensus 1 ~~v~I~~~g~~lP~~~v~~~e~~~~~~~~~~~i~~~~gi~~r~~~~~~~~~~~la~~A~~~aL~~a-g~~~~dId~vi~~ 79 (326)
T CHL00203 1 MGVHILSTGSSVPNFSVENQQFEDIIETSDHWISTRTGIKKRHLAPSSTSLTKLAAEAANKALDKA-HMDPLEIDLIILA 79 (326)
T ss_pred CccEEEEEEEECCCeEEcHHHHHHhcCCChhhEeeccCeEEEEeCCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEE
Confidence 5789999999999999999999999987777776 8999999999999999999999999999997 9999999999999
Q ss_pred eccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccc
Q psy2407 81 SESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTME 160 (245)
Q Consensus 81 t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~ 160 (245)
|+++++.. ..+..+++.||++ ++++++++++|+|++.||.+|..+|++|.+ +++|||++|.++..+++++ +.
T Consensus 80 s~~~~~~~-~~~~~v~~~Lg~~-~~~~~~v~~~Casg~~al~~A~~~i~sg~~--~~~Lvv~~e~~s~~~~~~~--~~-- 151 (326)
T CHL00203 80 TSTPDDLF-GSASQLQAEIGAT-RAVAFDITAACSGFILALVTATQFIQNGSY--KNILVVGADTLSKWIDWSD--RK-- 151 (326)
T ss_pred eCCCCCCC-chHHHHHHHhCCC-CCceeeecccchhHHHHHHHHHHHHHcCCC--CEEEEEEehhhhCcCCccc--CC--
Confidence 98886554 4578899999994 788999999999999999999999999976 9999999999999887765 21
Q ss_pred cccccccccceeEEEEecCCC--CeeEEeeccccccccccccccCC------------CCCC--CcccchhhHHHHHHHH
Q psy2407 161 WAFFEPSGGAGAVAMLISDKP--EIFQFDIGSNGYYSFEVMDTCRP------------IPDS--EAGNADLSLLSYLDCC 224 (245)
Q Consensus 161 ~~~~~~~~GDGAaA~ll~~~~--~i~~~~~~~~g~~~~~~~~~~~p------------~~~~--~~~~g~~~~~~~~~~~ 224 (245)
...+|||||+|+||++.+ +++.+.+.++|.++..+.....| .... -.|+|+..+..+++.+
T Consensus 152 ---~~~~fgDga~A~ll~~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 228 (326)
T CHL00203 152 ---TCILFGDGAGAAIIGASYENSILGFKLCTDGKLNSHLQLMNKPVNNQSFGTTKLPQGQYQSISMNGKEVYKFAVFQV 228 (326)
T ss_pred ---ceEEEcceeeEEEEEEcCCCCeEEEEEEEcCCCcceEEecCCCCCcccccccccccCCcceEEECCHHHHHHHHHHH
Confidence 145799999999998754 67788888888876543221111 0011 1377877778788899
Q ss_pred HHHHHHHHHHhcchhhhhc
Q psy2407 225 AQSFKEYKKRVQYKIIVYN 243 (245)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~ 243 (245)
.+++++++++.|+++.++.
T Consensus 229 ~~~i~~~L~~~g~~~~did 247 (326)
T CHL00203 229 PAVIIKCLNALNISIDEVD 247 (326)
T ss_pred HHHHHHHHHHcCCCHHHCC
Confidence 9999999999999988764
No 10
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=100.00 E-value=3.1e-35 Score=260.18 Aligned_cols=230 Identities=17% Similarity=0.152 Sum_probs=195.3
Q ss_pred ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407 2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC 80 (245)
Q Consensus 2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~ 80 (245)
|+++|.++|+|+|+++++++|+.+..+.+.+++. ++|+++||++.++++..+|+.+|+++||+++ |+++++||+||++
T Consensus 3 ~~~~I~~ig~~~P~~~v~~~e~~~~~~~~~~~i~~~~Gi~~r~~~~~~~~~~~la~~A~~~al~~a-g~~~~~Id~li~~ 81 (325)
T PRK12879 3 SYARITGIGTYVPPRVLTNDDLETFIDTSDEWIVQRTGIKERRIAHVEEYTSDLAIKAAERALARA-GLDAEDIDLIIVA 81 (325)
T ss_pred CCCEEEEEEEECCCcEEcHHHHHHhcCCCHHHhhhccCceEEEECCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEE
Confidence 6799999999999999999999999888878877 8999999999899999999999999999997 9999999999999
Q ss_pred eccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccc
Q psy2407 81 SESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTME 160 (245)
Q Consensus 81 t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~ 160 (245)
++++++..|+.+..+++.||++ ++++++++++|+|++.||.+|..+|++|.. ++||||++|+++..+++.+ +.
T Consensus 82 ~~~~~~~~~~~a~~l~~~lg~~-~~~~~~v~~~C~~~~~al~~A~~~l~~g~~--~~~Lvv~~e~~s~~~~~~~--~~-- 154 (325)
T PRK12879 82 TTTPDYLFPSTASQVQARLGIP-NAAAFDINAACAGFLYGLETANGLITSGLY--KKVLVIGAERLSKVTDYTD--RT-- 154 (325)
T ss_pred cCCCCCCCChHHHHHHHHhCCC-CCcEEEECccchHHHHHHHHHHHHHHcCCC--CEEEEEEehhhcCcCCccc--cC--
Confidence 9998888999999999999995 688999999999999999999999999966 9999999999988776554 21
Q ss_pred cccccccccceeEEEEecCCC---CeeEEeecccccccccc--ccccCCCCC-------CCcccchhhHHHHHHHHHHHH
Q psy2407 161 WAFFEPSGGAGAVAMLISDKP---EIFQFDIGSNGYYSFEV--MDTCRPIPD-------SEAGNADLSLLSYLDCCAQSF 228 (245)
Q Consensus 161 ~~~~~~~~GDGAaA~ll~~~~---~i~~~~~~~~g~~~~~~--~~~~~p~~~-------~~~~~g~~~~~~~~~~~~~~~ 228 (245)
...+|||||+|+||++++ +++...+.+++.+++.+ ..++.+... ...++|+..+...++.+.+++
T Consensus 155 ---~~~~~GDgAaA~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 231 (325)
T PRK12879 155 ---TCILFGDGAGAVVLEATENEPGFIDYVLGTDGDGGDILYRTGLGTTMDRDALSGDGYIVQNGREVFKWAVRTMPKGA 231 (325)
T ss_pred ---ceEEEeecceEEEEEecCCCCCeEEEEEEEcCCCCCeEEEcCCCCCCCccccccCccEEEcCHHHHHHHHHHHHHHH
Confidence 135799999999999854 57777788888776543 222221111 113667777777788899999
Q ss_pred HHHHHHhcchhhhh
Q psy2407 229 KEYKKRVQYKIIVY 242 (245)
Q Consensus 229 ~~~~~~~~~~~~~~ 242 (245)
++++++.|+++.++
T Consensus 232 ~~~L~~~g~~~~di 245 (325)
T PRK12879 232 RQVLEKAGLTKDDI 245 (325)
T ss_pred HHHHHHcCCCHHHC
Confidence 99999999998765
No 11
>PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III
Probab=100.00 E-value=7.7e-35 Score=263.05 Aligned_cols=230 Identities=19% Similarity=0.189 Sum_probs=192.8
Q ss_pred ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407 2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC 80 (245)
Q Consensus 2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~ 80 (245)
++++|.++|+|+|+++++|+++.+.++.+.+++. ++||++|+++.++++..+|+.+|+++||+++ |++++|||+||++
T Consensus 46 ~~~~I~g~g~~lP~~~v~n~el~~~~~~~~~~i~~~tGi~~R~~~~~~~~~~~La~~Aa~~aL~~a-gi~~~dId~li~~ 124 (379)
T PLN02326 46 SGSKLVGCGSAVPKLLITNDDLSKLVDTSDEWIATRTGIRNRRVLSGDETLTSLAVEAAKKALEMA-GVDPEDVDLVLLC 124 (379)
T ss_pred CCcEEEEEEEECCCceecHHHHHHhcCCchhheecccCcceEeecCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEE
Confidence 4689999999999999999999999888788887 8999999999899999999999999999997 9999999999999
Q ss_pred eccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccc
Q psy2407 81 SESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTME 160 (245)
Q Consensus 81 t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~ 160 (245)
|+++++.. +.+..+++.||++ +++++|++++|+|++.||++|..+|++|.+ +++|||++|.++..+++.+ +..
T Consensus 125 s~~~~~~~-~~a~~v~~~LG~~-~~~~~dv~~~Ca~~~~aL~~A~~~l~~g~~--~~vLVv~~e~~s~~~~~~d--~~~- 197 (379)
T PLN02326 125 TSSPDDLF-GSAPQVQAALGCT-NALAFDLTAACSGFVLGLVTAARFIRGGGY--KNVLVIGADALSRYVDWTD--RGT- 197 (379)
T ss_pred eCCCCccC-cHHHHHHHHhCCC-CCceeeccccchHHHHHHHHHHHHHHcCCC--CEEEEEEechhcCCCCccc--cCc-
Confidence 98886654 5688999999995 889999999999999999999999999966 9999999999998887655 221
Q ss_pred cccccccccceeEEEEecCCC----CeeEEeeccccccccccccccC---------CC---------C-CC--Ccccchh
Q psy2407 161 WAFFEPSGGAGAVAMLISDKP----EIFQFDIGSNGYYSFEVMDTCR---------PI---------P-DS--EAGNADL 215 (245)
Q Consensus 161 ~~~~~~~~GDGAaA~ll~~~~----~i~~~~~~~~g~~~~~~~~~~~---------p~---------~-~~--~~~~g~~ 215 (245)
..+|||||+|+||++.+ +++.+.+.++|.+++.+..... +. . .. -.|+|+.
T Consensus 198 ----~~lfGDGAaAvlL~~~~~~~~~i~~~~~~t~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 273 (379)
T PLN02326 198 ----CILFGDGAGAVVLQACDDDEDGLLGFDMHSDGNGHKHLHATFKGEDDDSSGGNTNGVGDFPPKKASYSCIQMNGKE 273 (379)
T ss_pred ----eEEEcceeEEEEEEEcCCCCCceEEEEEEEcCCCCCeEEecCCCCcccccccccccccccccccccccceEecCHH
Confidence 24799999999999743 5778888888877654311100 00 0 01 1267777
Q ss_pred hHHHHHHHHHHHHHHHHHHhcchhhhhc
Q psy2407 216 SLLSYLDCCAQSFKEYKKRVQYKIIVYN 243 (245)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (245)
.++..++.+.+++++++++.|+++.++.
T Consensus 274 v~~~~~~~~~~~i~~~L~~~gl~~~dId 301 (379)
T PLN02326 274 VFKFAVRCVPQVIESALQKAGLTAESID 301 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCC
Confidence 7887788999999999999999987653
No 12
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=100.00 E-value=1.4e-34 Score=257.50 Aligned_cols=235 Identities=18% Similarity=0.194 Sum_probs=190.3
Q ss_pred ceeEEeEEeEecCCceecHHHHHHHc-------CCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCC
Q psy2407 2 IKVGIEAINLYGGSVFIDVIELAKYR-------KLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNS 73 (245)
Q Consensus 2 ~~~~I~~i~~~lP~~~v~~~~~~~~~-------~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~d 73 (245)
.+++|.++++|+|+++++|+++.+.+ +.+++++. ++||++|+++.++++..+|+.+|+++||+++ |++++|
T Consensus 4 ~~v~I~~~g~~lP~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~la~~Aa~~aL~~a-g~~~~~ 82 (338)
T PRK09258 4 SNVAILSLAYELAPVVVTSSEIEERLAPLYERLRLPPGQLEALTGIRERRWWPEGTQLSDGAIAAGRKALAEA-GIDPSD 82 (338)
T ss_pred cceEEEEEEecCCCccCcHHHHHHHhhhcccccCCChhHhhhhcCceeEecCCCCCCHHHHHHHHHHHHHHHc-CCCHHH
Confidence 46999999999999999999999764 34566676 7899999998889999999999999999997 999999
Q ss_pred cCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCc
Q psy2407 74 IELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTED 153 (245)
Q Consensus 74 Id~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~ 153 (245)
||+||++|+++++..|+.+..++++||+++++++++++++|+|++.||++|..+|++|.+ ++|||+++|+++..+++.
T Consensus 83 Id~li~~s~~~~~~~p~~a~~v~~~lgl~~~~~~~~v~~~C~~~~~al~~A~~~i~~g~~--~~~Lvv~~e~~s~~~~~~ 160 (338)
T PRK09258 83 IGLLINTSVCRDYLEPATACRVHHNLGLPKSCANFDVSNACLGFLNGMLDAANMIELGQI--DYALVVSGESAREIVEAT 160 (338)
T ss_pred CCEEEEEcCCCCCCCChHHHHHHHHcCCCCCCceeehhhhhHHHHHHHHHHHHHHHcCCC--CEEEEEEecccchhccch
Confidence 999999999988899999999999999965789999999999999999999999999966 999999999998876542
Q ss_pred ------cccc--ccccccccccccceeEEEEecCCC------CeeEEeeccccccccccccccCCCCCCCcccchhhHHH
Q psy2407 154 ------KNEL--TMEWAFFEPSGGAGAVAMLISDKP------EIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLS 219 (245)
Q Consensus 154 ------~~~~--~~~~~~~~~~~GDGAaA~ll~~~~------~i~~~~~~~~g~~~~~~~~~~~p~~~~~~~~g~~~~~~ 219 (245)
++.. .....+...+|||||+|+||++++ +++.....+++.+.+. +++......++++..++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~GDGA~A~ll~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 236 (338)
T PRK09258 161 IDRLLAPETTREDFAQSFATLTLGSGAAAAVLTRGSLHPRGHRLLGGVTRAATEHHEL----CQGGRDGMRTDAVGLLKE 236 (338)
T ss_pred hhhhccCccchhhhhhccceEEecccceEEEEecCCCCCCcceeeeeeeecCCCcccc----cccCccceEEcHHHHHHH
Confidence 1000 001112245799999999999742 3444444555554331 111112224788899999
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhc
Q psy2407 220 YLDCCAQSFKEYKKRVQYKIIVYN 243 (245)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~ 243 (245)
+.+.+.+++++++++.|+++.++.
T Consensus 237 ~~~~~~~~~~~~L~~~g~~~~did 260 (338)
T PRK09258 237 GVELAVDTWEAFLAQLGWAVEQVD 260 (338)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC
Confidence 999999999999999999987653
No 13
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=100.00 E-value=2.6e-34 Score=253.39 Aligned_cols=230 Identities=18% Similarity=0.184 Sum_probs=197.1
Q ss_pred eeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEe
Q psy2407 3 KVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCS 81 (245)
Q Consensus 3 ~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t 81 (245)
+++|.++++|+|+++++++++.+.++.+.+++. ++|+++||++.+++++.+|+.+|+++||+++ |+++++||.||+++
T Consensus 1 ~~~I~~i~~~lP~~~~~~~~~~~~~~~~~~~~~~~~Gi~~r~~~~~~~~~~~la~~A~~~al~~a-g~~~~~Id~li~~~ 79 (320)
T cd00830 1 NARILGIGSYLPERVVTNDELEKRLDTSDEWIRTRTGIRERRIADPGETTSDLAVEAAKKALEDA-GIDADDIDLIIVAT 79 (320)
T ss_pred CCEEEEEEEECCCcEEcHHHHHHHcCCCHHHhhhccCceEEeeCCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEc
Confidence 579999999999999999999999988888877 8999999999888999999999999999997 99999999999999
Q ss_pred ccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccccccccc
Q psy2407 82 ESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEW 161 (245)
Q Consensus 82 ~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~ 161 (245)
+++++..|+.+.+|++.||++ ++++++++++|+|++.+|.+|..+|++|.. +++||+++|.++..+++.+ +.
T Consensus 80 ~~~~~~~~~~~~~l~~~lg~~-~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~vLvv~~e~~s~~~~~~~--~~--- 151 (320)
T cd00830 80 STPDYLFPATACLVQARLGAK-NAAAFDINAACSGFLYGLSTAAGLIRSGGA--KNVLVVGAETLSRILDWTD--RS--- 151 (320)
T ss_pred CCCCCCCCcHHHHHHHHhCCC-CCcEeeccccchHHHHHHHHHHHHHHcCCC--CEEEEEEehhhccccCccc--CC---
Confidence 998877899999999999995 789999999999999999999999999965 9999999999998776544 11
Q ss_pred ccccccccceeEEEEecCCC---CeeEEeecccccccccccc----ccCCCCC------CCcccchhhHHHHHHHHHHHH
Q psy2407 162 AFFEPSGGAGAVAMLISDKP---EIFQFDIGSNGYYSFEVMD----TCRPIPD------SEAGNADLSLLSYLDCCAQSF 228 (245)
Q Consensus 162 ~~~~~~~GDGAaA~ll~~~~---~i~~~~~~~~g~~~~~~~~----~~~p~~~------~~~~~g~~~~~~~~~~~~~~~ 228 (245)
...+|||||+|+||++.+ +++.+.+.+++.+++.+.- ..+|... ...++++..+..+.+.+.+++
T Consensus 152 --~~~~~GDgAaA~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 229 (320)
T cd00830 152 --TAVLFGDGAGAVVLEATEEDPGILDSVLGSDGSGADLLTIPAGGSRSPFEDAEGGDPYLVMDGREVFKFAVRLMPESI 229 (320)
T ss_pred --ceEEEeccceEEEEEecCCCCcEEEEEEEEcCCCCCeEEeCCCCcCCccccccccCccEEEcChHHHHHHHHhhHHHH
Confidence 246899999999999864 5888888888887764321 1112110 113778888888999999999
Q ss_pred HHHHHHhcchhhhhc
Q psy2407 229 KEYKKRVQYKIIVYN 243 (245)
Q Consensus 229 ~~~~~~~~~~~~~~~ 243 (245)
++++++.|+++.++.
T Consensus 230 ~~~l~~~g~~~~di~ 244 (320)
T cd00830 230 EEALEKAGLTPDDID 244 (320)
T ss_pred HHHHHHcCCCHHHCC
Confidence 999999999987653
No 14
>PRK04262 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-34 Score=257.18 Aligned_cols=227 Identities=24% Similarity=0.266 Sum_probs=181.3
Q ss_pred ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407 2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC 80 (245)
Q Consensus 2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~ 80 (245)
|+++|.++++|+|+++++|+++.+.++.+++|+. ++||++|+++.++++..+|+.+|+++||+++ |++++|||+||++
T Consensus 1 ~~v~I~~~g~ylP~~~v~~~el~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~la~~Aa~~aL~~a-g~~~~dId~li~~ 79 (347)
T PRK04262 1 MMVGIVGYGAYIPRYRIKVEEIARVWGDDPEAIKRGLGVEEKSVPGPDEDTATIAVEAARNALKRA-GIDPKEIGAVYVG 79 (347)
T ss_pred CceeEEEEEEeCCCEEecHHHHHHHhCcCHHHHhhccCeeeeecCCCCcCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEE
Confidence 6799999999999999999999999999999987 8999999999999999999999999999997 9999999999999
Q ss_pred eccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccc
Q psy2407 81 SESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTME 160 (245)
Q Consensus 81 t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~ 160 (245)
|+++++..|+.+.++++.||+++++++++++++|+|++.+|+.|..+|++|.. +++|||++|+.. .++.+ .
T Consensus 80 s~~~~~~~p~~a~~v~~~Lgl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~--~~aLVv~~e~~~--~~~~~-----~ 150 (347)
T PRK04262 80 SESHPYAVKPTATIVAEALGATPDLTAADLEFACKAGTAALQAAMGLVKSGMI--KYALAIGADTAQ--GAPGD-----A 150 (347)
T ss_pred ecCCCcccccHHHHHHHHcCCCCCceEEEHHHhHHHHHHHHHHHHHHHHcCCC--CEEEEEEEeeec--cCCCC-----C
Confidence 99998888999999999999965688999999999999999999999999966 999999999842 22222 1
Q ss_pred cccccccccceeEEEEecCCCCeeEEeeccccccccccccccCCCCCC-CcccchhhH-HHHHHHHHHHHHHHHHHhcch
Q psy2407 161 WAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSL-LSYLDCCAQSFKEYKKRVQYK 238 (245)
Q Consensus 161 ~~~~~~~~GDGAaA~ll~~~~~i~~~~~~~~g~~~~~~~~~~~p~~~~-~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~ 238 (245)
+ ..+|||||+|+||++.+....+. .+ ..+..+..++|++.... +.....+.. ..|++.+.+++++++++.|++
T Consensus 151 ~---~~~~GDGA~A~ll~~~~~~~~i~-~~-~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~ 225 (347)
T PRK04262 151 L---EYTAAAGGAAFIIGKEEVIAEIE-AT-YSYTTDTPDFWRREGEPYPRHGGRFTGEPAYFKHIISAAKGLMEKLGLK 225 (347)
T ss_pred C---CCcCCCCcEEEEEecCcccceee-cc-ccccccchhhcCCCCCcCCCcCceecchHHHHHHHHHHHHHHHHHhCcC
Confidence 1 24689999999999755321111 11 11222334566643321 111112222 256788999999999999998
Q ss_pred hhhhc
Q psy2407 239 IIVYN 243 (245)
Q Consensus 239 ~~~~~ 243 (245)
+.++.
T Consensus 226 ~~dId 230 (347)
T PRK04262 226 PSDYD 230 (347)
T ss_pred HHHhc
Confidence 87653
No 15
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=100.00 E-value=8e-34 Score=250.52 Aligned_cols=228 Identities=20% Similarity=0.161 Sum_probs=196.9
Q ss_pred CceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEE
Q psy2407 1 MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIIT 79 (245)
Q Consensus 1 m~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~ 79 (245)
|+.++|.++++|+|+++++++++.+..+.+++++. ++|+++|+++.++++..+|+.+|+++||+++ |+++++||.+++
T Consensus 1 ~~~v~I~ai~~~lP~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~~~~~~~~~~~la~~A~~~al~~a-gl~~~~id~vi~ 79 (319)
T PRK09352 1 MMYAKILGTGSYLPERVVTNDDLEKMVDTSDEWIVTRTGIKERRIAAPDETTSDLATEAAKKALEAA-GIDPEDIDLIIV 79 (319)
T ss_pred CCceEEEEEEEECCCeEEcHHHHHHHcCCCHHHhhhhcCeEEEEeCCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEE
Confidence 89999999999999999999999999888777776 8999999998899999999999999999997 999999999999
Q ss_pred EeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccccccc
Q psy2407 80 CSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTM 159 (245)
Q Consensus 80 ~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~ 159 (245)
+++++++..|+.+..|+..||+ .++++++++++|++++.||..|..+|++|.+ +++||+++|+++..+++.+ +.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~lG~-~~~~~~~v~~~Casg~~al~~A~~~i~~g~~--~~vLvv~~e~~s~~~~~~~--~~- 153 (319)
T PRK09352 80 ATTTPDYAFPSTACLVQARLGA-KNAAAFDLSAACSGFVYALSTADQFIRSGAY--KNVLVIGAEKLSRIVDWTD--RS- 153 (319)
T ss_pred EcCCCCCCCchHHHHHHHHhCC-CCCcEeeccccchhHHHHHHHHHHHHHcCCC--CEEEEEEehhhccccCccc--CC-
Confidence 9998877788999999999999 5789999999999999999999999999966 9999999999988776544 11
Q ss_pred ccccccccccceeEEEEecCCC--CeeEEeeccccccccccccccCCCCC--------CCcccchhhHHHHHHHHHHHHH
Q psy2407 160 EWAFFEPSGGAGAVAMLISDKP--EIFQFDIGSNGYYSFEVMDTCRPIPD--------SEAGNADLSLLSYLDCCAQSFK 229 (245)
Q Consensus 160 ~~~~~~~~~GDGAaA~ll~~~~--~i~~~~~~~~g~~~~~~~~~~~p~~~--------~~~~~g~~~~~~~~~~~~~~~~ 229 (245)
...+|||||+|+||++++ +++.+.+.++|++.+.+. .|... .-.++++..++.+.+.+.++++
T Consensus 154 ----~~~~~gDGaaA~ll~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (319)
T PRK09352 154 ----TCVLFGDGAGAVVLGASEEPGILSTHLGSDGSYGDLLY---LPGGGSRGPASPGYLRMEGREVFKFAVRELAKVAR 226 (319)
T ss_pred ----ceEEEeccceEEEEEEcCCCCeEEEEEEEcCCCCCeEE---eCCCCCCCCCCCCceEECCHHHHHHHHHHHHHHHH
Confidence 135799999999999864 577888888888765332 12221 1136777788888999999999
Q ss_pred HHHHHhcchhhhh
Q psy2407 230 EYKKRVQYKIIVY 242 (245)
Q Consensus 230 ~~~~~~~~~~~~~ 242 (245)
+++++.|+++.++
T Consensus 227 ~~l~~~g~~~~di 239 (319)
T PRK09352 227 EALEAAGLTPEDI 239 (319)
T ss_pred HHHHHcCCCHHHC
Confidence 9999999988765
No 16
>PRK06840 hypothetical protein; Validated
Probab=100.00 E-value=7.6e-34 Score=252.94 Aligned_cols=233 Identities=19% Similarity=0.217 Sum_probs=188.6
Q ss_pred ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407 2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC 80 (245)
Q Consensus 2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~ 80 (245)
|+++|.++++|+|+++++++++.+..+.+.+++. ++|+++||++.++++..+|+.+|+++||+++ |++++|||+||++
T Consensus 3 ~~v~I~~~~~~lP~~~v~~~~l~~~~g~~~~~~~~~~Gi~~r~~~~~~~~~~~la~~Aa~~aL~~a-g~~~~dId~li~~ 81 (339)
T PRK06840 3 MNVGIVGTGVYLPKDVMTAEEIAEKTGIPEEVVIEKFGIYEKPVPGPEDHTSDMAIAAAKPALKQA-GVDPAAIDVVIYI 81 (339)
T ss_pred CceEEEEEEEeCCCcccCHHHHHHHhCCCHHHHhhhcCcceEeeCCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEe
Confidence 6899999999999999999999999999888887 8999999999888999999999999999997 9999999999977
Q ss_pred ec-cCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhc-CCCCCCeEEEEEeccccccccCcccccc
Q psy2407 81 SE-SGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILS-KVSPGAKALVIATDISRFFVTEDKNELT 158 (245)
Q Consensus 81 t~-~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~s-g~~~~~~aLVv~~e~~s~~~~~~~~~~~ 158 (245)
++ ++++..|+.+.+|+++||++ ++++++++++|+|++.||.+|..+|++ |.+ +++|||++|..+..+++.++ .
T Consensus 82 ~~~~~~~~~p~~a~~l~~~lGl~-~~~~~~v~~~C~~~~~al~~A~~~l~~~g~~--~~~Lvv~~~~~s~~~~~~~~--~ 156 (339)
T PRK06840 82 GSEHKDYPVWSSAPKIQHEIGAK-NAWAFDIMAVCASFPIALKVAKDLLYSDPSI--ENVLLVGGYRNSDLVDYDNP--R 156 (339)
T ss_pred ccCCCCCCCCchHHHHHHHhCCC-CcccccccccchHHHHHHHHHHHHHhcCCCc--cEEEEEeecccccccCcCCC--C
Confidence 54 56777899999999999994 789999999999999999999999999 766 99999999999888776552 1
Q ss_pred cccccccccccceeEEEEecCCC---CeeEEeecccccccccccc----ccCCCC-CC-------CcccchhhHHHH---
Q psy2407 159 MEWAFFEPSGGAGAVAMLISDKP---EIFQFDIGSNGYYSFEVMD----TCRPIP-DS-------EAGNADLSLLSY--- 220 (245)
Q Consensus 159 ~~~~~~~~~~GDGAaA~ll~~~~---~i~~~~~~~~g~~~~~~~~----~~~p~~-~~-------~~~~g~~~~~~~--- 220 (245)
... ..+|||||+|+||++++ +++...+.+++++++.+.. .-.|.. .. ..+.+...+...
T Consensus 157 ~~~---~~~~GDgAaA~ll~~~~~~~~il~~~~~t~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (339)
T PRK06840 157 TRF---MFNFAAGGSAALLKKDAGKNRILGSAIITDGSFSEDVRVPAGGTKQPASPETVENRQHYLDVIDPESMKERLDE 233 (339)
T ss_pred eee---eccCCCceeEEEEEecCCCCceEEEEEEEcCCccceEEecCCCcCCCCcccccccccceEEEcCcHHHHHHhHh
Confidence 111 12489999999999753 6777888888887765421 111210 00 013334444433
Q ss_pred --HHHHHHHHHHHHHHhcchhhhhc
Q psy2407 221 --LDCCAQSFKEYKKRVQYKIIVYN 243 (245)
Q Consensus 221 --~~~~~~~~~~~~~~~~~~~~~~~ 243 (245)
+..+.+++++++++.|+++.++.
T Consensus 234 ~~~~~~~~~i~~~L~~~gl~~~did 258 (339)
T PRK06840 234 VSIPNFLKVIREALRKSGYTPKDID 258 (339)
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHCC
Confidence 34577999999999999988764
No 17
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=100.00 E-value=9.3e-34 Score=250.11 Aligned_cols=231 Identities=18% Similarity=0.186 Sum_probs=197.2
Q ss_pred ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407 2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC 80 (245)
Q Consensus 2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~ 80 (245)
|.++|.++++|+|+++++++++.+.++.+..++. ++|+++|++..+++++.+|+.+|+++||+++ |+++++||.++++
T Consensus 1 ~~~~I~~i~~~~P~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~~~~~~~~~~~la~~A~~~al~~a-gl~~~~Id~~i~~ 79 (318)
T TIGR00747 1 MYAGILGTGSYLPEKVLTNADLEKMVDTSDEWIVTRTGIKERRIAADDETSSTMGFEAAKRAIENA-GISKDDIDLIIVA 79 (318)
T ss_pred CCCEEEEEEEECCCceecHHHHHHhcCCchHHeecccCceEEEECCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEE
Confidence 5689999999999999999999999887777776 7999999999899999999999999999997 9999999999999
Q ss_pred eccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccc
Q psy2407 81 SESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTME 160 (245)
Q Consensus 81 t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~ 160 (245)
++++++..|+.+.++++.||++ ++++++++++|+|++.+|+.|..+|++|.+ +++||+++|.++..+++.+ +.
T Consensus 80 ~~~~~~~~~~~a~~l~~~lGl~-~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~~Lvv~~e~~~~~~~~~~--~~-- 152 (318)
T TIGR00747 80 TTTPDHAFPSAACMVQAYLGIK-GIPAFDLSAACAGFIYALSVAKQYIESGKY--KTVLVVGAEKLSSTLDWTD--RG-- 152 (318)
T ss_pred CCCCCCCCChHHHHHHHHhCCC-CCcEeehhhhhHHHHHHHHHHHHHHHcCCC--CEEEEEEehhhcCcCCcCC--CC--
Confidence 9998888899999999999994 689999999999999999999999999966 9999999999988776654 11
Q ss_pred cccccccccceeEEEEecCCC---CeeEEeeccccccccccc--cccCCCCC-C--CcccchhhHHHHHHHHHHHHHHHH
Q psy2407 161 WAFFEPSGGAGAVAMLISDKP---EIFQFDIGSNGYYSFEVM--DTCRPIPD-S--EAGNADLSLLSYLDCCAQSFKEYK 232 (245)
Q Consensus 161 ~~~~~~~~GDGAaA~ll~~~~---~i~~~~~~~~g~~~~~~~--~~~~p~~~-~--~~~~g~~~~~~~~~~~~~~~~~~~ 232 (245)
...+|||||+|+||++++ +++.+.+.+++++++.+. ..+.+..+ . ..+++...++.+++.+.+++++++
T Consensus 153 ---~~~~~GDGAaA~lL~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 229 (318)
T TIGR00747 153 ---TCVLFGDGAGAVVLGESEDPGGIISTHLGADGTQGEALYLPAGGRPTSGPSPFITMEGNEVFKHAVRKMGDVVEETL 229 (318)
T ss_pred ---eEEEEecceeEEEEeecCCCCcEEEEEEEEcCCCcceEEECCCCcCCCCCCCceEECCHHHHHHHHHHHHHHHHHHH
Confidence 134699999999999864 477788888888776532 22222111 1 236778888899999999999999
Q ss_pred HHhcchhhhhc
Q psy2407 233 KRVQYKIIVYN 243 (245)
Q Consensus 233 ~~~~~~~~~~~ 243 (245)
++.|+++.++.
T Consensus 230 ~~~g~~~~di~ 240 (318)
T TIGR00747 230 EANGLDPEDID 240 (318)
T ss_pred HHcCCCHHHCC
Confidence 99999987654
No 18
>TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative. Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound.
Probab=100.00 E-value=5.8e-34 Score=254.34 Aligned_cols=226 Identities=22% Similarity=0.257 Sum_probs=180.0
Q ss_pred eeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEe
Q psy2407 3 KVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCS 81 (245)
Q Consensus 3 ~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t 81 (245)
+++|.++|+|+|+++++|+++.+.++.+++|+. ++|+++|+++.+++++.+|+++|+++||+++ |++++|||+||++|
T Consensus 1 ~~~I~g~g~~lP~~~v~n~~l~~~~~~~~~~i~~~~Gi~~r~v~~~~~~~~~la~~Aa~~aL~~a-gl~~~dID~li~~s 79 (345)
T TIGR00748 1 MAGIVGYGAYIPMYRIKVEEIARVWGKDPESISNGLPVEEKAVPGLDEDTATIGVEAARNALKRA-KIDPKDIGAVYVGS 79 (345)
T ss_pred CccEEEEEEeCCCeeecHHHHHHHhCCCHhHeeeccceeeeecCCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEe
Confidence 468999999999999999999999998889987 8999999999899999999999999999997 99999999999999
Q ss_pred ccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccccccccc
Q psy2407 82 ESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEW 161 (245)
Q Consensus 82 ~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~ 161 (245)
+++++..|+.+..+++.||++++++++|++++|+|++.||.+|..+|++|.+ +++|||++|.++.. +.+ .+
T Consensus 80 ~~~~~~~p~~a~~v~~~LGl~~~~~~~dv~~aC~g~~~al~~A~~~i~sg~~--~~vLVv~~d~~~~~--~~~-----~~ 150 (345)
T TIGR00748 80 ESHPYAVKPTATIVAEAIGATPDLTAADLEFACKAGTAGIQACMGLVASGMI--KYGLAIGADTAQGA--PGD-----AL 150 (345)
T ss_pred cCCCccccchHHHHHHHcCCCCCceEEEHHHhHHHHHHHHHHHHHHHHcCCC--CEEEEEEEeecccC--CCc-----cC
Confidence 9998888999999999999965789999999999999999999999999966 99999999998632 222 22
Q ss_pred ccccccccceeEEEEecCCCCeeEEeeccccccccccccccCCCCCC-CcccchhhH-HHHHHHHHHHHHHHHHHhcchh
Q psy2407 162 AFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSL-LSYLDCCAQSFKEYKKRVQYKI 239 (245)
Q Consensus 162 ~~~~~~~GDGAaA~ll~~~~~i~~~~~~~~g~~~~~~~~~~~p~~~~-~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 239 (245)
..+|||||+|+||++.+....+. .+ ..+..+..++|++.... +...+++.. ..+.+...+++++++++.|+++
T Consensus 151 ---~~~~GDGAaA~vl~~~~~~~~~~-~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~ 225 (345)
T TIGR00748 151 ---EYTAGAGGAAYIIGEKNTVAYFE-GT-YSYTTDTPDFWRREGEPYPRHGGRFTGEPAYFHHVVTAAKGLMEKLGLTP 225 (345)
T ss_pred ---cccCCCceEEEEEccCCcceEee-cc-cceecccccccccCCCcCCCcCCeecChHHHHHHHHHHHHHHHHHcCCCH
Confidence 35689999999999765432221 11 11222233566653221 222222222 2345556688899999999988
Q ss_pred hhhc
Q psy2407 240 IVYN 243 (245)
Q Consensus 240 ~~~~ 243 (245)
.++.
T Consensus 226 ~did 229 (345)
T TIGR00748 226 EDFD 229 (345)
T ss_pred HHcC
Confidence 7653
No 19
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=100.00 E-value=9.3e-34 Score=255.91 Aligned_cols=238 Identities=16% Similarity=0.135 Sum_probs=181.5
Q ss_pred ceeEEeEEeEecCCceecHHHHHHHcCCC-------hHHHh-hccceeeeecCC-----CCCHHHHHHHHHHHHHHhcCC
Q psy2407 2 IKVGIEAINLYGGSVFIDVIELAKYRKLD-------TVRFE-NLLMQQKSVSLP-----YEDPVSFAINAAAPLIDNLSN 68 (245)
Q Consensus 2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~-------~~~~~-~~Gi~~r~~~~~-----~e~~~~la~~Aa~~aL~~a~g 68 (245)
|+++|.++|+|+|+++++|+++.++++.. .+|+. ++||++||++.+ +++..+|+.+|+++||+++ |
T Consensus 1 ~~v~I~gig~~lP~~~v~n~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~~~~~~La~~A~~~aL~~a-g 79 (378)
T PRK06816 1 MNVYITSTGAFLPGEPVSNDEMEAYLGLINGKPSRARRIILRNNGIKTRHYALDPEGRPTHSNAQMAAEAIRDLLDDA-G 79 (378)
T ss_pred CCeEEEeeeecCCCCccCHHHHHHHHhhccCCcHHHHHHHHHhCCCceEEEEECCCCCCCCCHHHHHHHHHHHHHHHc-C
Confidence 57999999999999999999998876531 24565 899999998754 2578999999999999997 9
Q ss_pred CCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccc
Q psy2407 69 IDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 69 ~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~ 148 (245)
++++|||+||++|+++++..|+.+..|++.||++ ++++++++++|+|++.||.+|..+|++|.. +++|||++|++|.
T Consensus 80 i~~~dId~li~~s~~~~~~~p~~a~~v~~~Lgl~-~~~~~~v~~~Cas~~~al~~A~~~i~sg~~--~~vLvv~~E~~s~ 156 (378)
T PRK06816 80 FSLGDIELLACGTSQPDQLMPGHASMVHGELGAP-PIEVVSSAGVCAAGMMALKYAYLSVKAGES--RNAVATASELASR 156 (378)
T ss_pred CCHHHCCEEEEEECCCCcCChHHHHHHHhhCCCC-CCceeeecCcCHHHHHHHHHHHHHHHCCCC--CEEEEEeEccchh
Confidence 9999999999999999888899999999999995 688999999999999999999999999966 9999999999998
Q ss_pred cccCcccc----------c--cc--ccccccccccceeEEEEecCCC---Ce-eEEeecccccccccccc----------
Q psy2407 149 FVTEDKNE----------L--TM--EWAFFEPSGGAGAVAMLISDKP---EI-FQFDIGSNGYYSFEVMD---------- 200 (245)
Q Consensus 149 ~~~~~~~~----------~--~~--~~~~~~~~~GDGAaA~ll~~~~---~i-~~~~~~~~g~~~~~~~~---------- 200 (245)
.+++.+.+ + .. ...+...+|||||+|+||++.+ ++ +.+.+..++++......
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fGDGA~A~vl~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (378)
T PRK06816 157 WFRASRFEAEEEKLAELEENPEIAFEKDFLRWMLSDGAGAVLLENKPRPDGLSLRIDWIDLRSYAGELPVCMYAGAEKNE 236 (378)
T ss_pred hhhhhhhhhHHHHhhcCcccCCCCCCCCCCCEeeecccEEEEEEecCCCCCceEEEEEEeeecccccCccceecCCccCC
Confidence 88753210 0 00 0011234799999999998743 32 44444444444322111
Q ss_pred -----ccCCCCCC---------CcccchhhHHHHHHHHHHHHHHHHHHhcchhhhhc
Q psy2407 201 -----TCRPIPDS---------EAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIVYN 243 (245)
Q Consensus 201 -----~~~p~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (245)
.|++.... -.++++...+.+.+.+.+++++++++.|++++++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~DId 293 (378)
T PRK06816 237 DGSLKGWSDYPPEEAEAASALSLKQDVRLLNENIVVYTIKPLLELVDKRNLDPDDID 293 (378)
T ss_pred CCCccCcccCCHHHHHhccCchHHhHHHHHHHHhHHHHHHHHHHHHHHcCCChhhCC
Confidence 22221100 01455566666677779999999999999988653
No 20
>PLN03169 chalcone synthase family protein; Provisional
Probab=100.00 E-value=1.4e-32 Score=248.86 Aligned_cols=233 Identities=17% Similarity=0.100 Sum_probs=174.5
Q ss_pred eeEEeEEeEecCCceecHHHHHHHc----CCChHH-------Hh-hccceeeeecCC-----------------------
Q psy2407 3 KVGIEAINLYGGSVFIDVIELAKYR----KLDTVR-------FE-NLLMQQKSVSLP----------------------- 47 (245)
Q Consensus 3 ~~~I~~i~~~lP~~~v~~~~~~~~~----~~~~~~-------~~-~~Gi~~r~~~~~----------------------- 47 (245)
.+.|.++|+++|++.++|+++.+.+ +.+..+ +. ++||++||++.+
T Consensus 21 ~~~I~gigt~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 100 (391)
T PLN03169 21 KATILALGKAFPSQLVPQEYLVDGYFRDTKCDDPALKEKLERLCKTTTVKTRYVVMSKEILDKYPELATEGTPTIKQRLD 100 (391)
T ss_pred CeEEEEEEeeCCCeecCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCcceeeEeccccchhhCccccccCCCCHHHHHH
Confidence 4789999999999999999998752 222222 22 589999999753
Q ss_pred --CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCc-ceeeecCcchhHHHHHHHH
Q psy2407 48 --YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNC-RLFELKQACYSCTAGLQMA 124 (245)
Q Consensus 48 --~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~-~~~dv~~~C~~~~~aL~~A 124 (245)
++++.+|+++|+++||+++ |++++|||+||++|++ ++..|+.+.+|+++||+++.+ .++|++.||+|+++||.+|
T Consensus 101 ~~~e~~~~La~~Aa~~aL~~a-g~~~~dId~lI~~t~t-~~~~P~~a~~l~~~LGl~~~~~~~~d~~~gC~g~~~aL~~A 178 (391)
T PLN03169 101 IANEAVTQMAVEASLACIKEW-GRPVSDITHLVYVSSS-EARLPGGDLYLAKQLGLSPDVQRVMLYFLGCSGGVAGLRVA 178 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCHHHCCEEEEECcC-CCCCCcHHHHHHHHhCcCCcceeeecccChhHHHHHHHHHH
Confidence 4568999999999999997 9999999999999885 788999999999999997655 4799999999999999999
Q ss_pred HHHHhcCCCCCCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCCCCe----eEEeecccccccccccc
Q psy2407 125 INFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPEI----FQFDIGSNGYYSFEVMD 200 (245)
Q Consensus 125 ~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~~i----~~~~~~~~g~~~~~~~~ 200 (245)
..+++++.. ++||||++|.++..+++.+..+... .....+|||||+|+||++.+.- ..+.+.++++. .+++
T Consensus 179 ~~~~~~~~~--~~vLvv~~e~~s~~~~~~~~~~~~d-~~~~~lFGDGAaA~vl~~~~~~~~~~~~~~l~~~~~~--~ip~ 253 (391)
T PLN03169 179 KDIAENNPG--SRVLLTTSETTILGFRPPSPDRPYD-LVGAALFGDGAAAVIIGADPIPVSESPFFELHTAIQQ--FLPG 253 (391)
T ss_pred HHHHHhCCC--CeEEEEEEEcChhhccCCCccchhh-hhhhhhccCceEEEEEecCCCcccCCcceEEEeeeee--EcCC
Confidence 999999955 9999999999987665321100000 1125689999999999875321 11233333321 1111
Q ss_pred c-----cCCCC-CCCcccchhhHHHHHHHHHHHHHHHHHHhcchhhhh
Q psy2407 201 T-----CRPIP-DSEAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIVY 242 (245)
Q Consensus 201 ~-----~~p~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (245)
. |+-.. +...+.|+..++...+.+.+.+++++++.|+++.++
T Consensus 254 ~~~~~~~~~~~~g~~~~~g~~v~~~~~~~~~~~i~~~L~~~gl~~~di 301 (391)
T PLN03169 254 TEKTIDGRLTEEGINFKLGRELPQKIEDNIEGFCKKLMKKAGLVEKDY 301 (391)
T ss_pred CccccCceecCCceEEEECcHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 0 11000 012366788888889999999999999999986544
No 21
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=100.00 E-value=1.5e-32 Score=246.61 Aligned_cols=233 Identities=16% Similarity=0.179 Sum_probs=178.9
Q ss_pred eeEEeEEeEecCCceecHHHHHHHcCC--Ch----------HHHh-hccceeeeecCC--CC------------------
Q psy2407 3 KVGIEAINLYGGSVFIDVIELAKYRKL--DT----------VRFE-NLLMQQKSVSLP--YE------------------ 49 (245)
Q Consensus 3 ~~~I~~i~~~lP~~~v~~~~~~~~~~~--~~----------~~~~-~~Gi~~r~~~~~--~e------------------ 49 (245)
.++|.++++|+|+++++|+++.+.++. +. +++. ++||++||++.+ ++
T Consensus 1 ~~~I~~~~~~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gI~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (361)
T cd00831 1 AATILAIGTAVPPHRVPQSELVDFYRRLFSSDHLPELKEKLKRLCAKTGIETRYLVLPGGEETYAPRPEMSPSLDERNDI 80 (361)
T ss_pred CcEEEEEEEeCCCCcCCHHHhhHHHHhcCChhhhHHHHHHHHHHHhhcceeEEEEEecCchhhcCCccccCCCcCcchhh
Confidence 368999999999999999999987642 22 4454 799999999875 33
Q ss_pred ---CHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeec-CcchhHHHHHHHHH
Q psy2407 50 ---DPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK-QACYSCTAGLQMAI 125 (245)
Q Consensus 50 ---~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~-~~C~~~~~aL~~A~ 125 (245)
++.+|+.+|+++||+++ |++++|||+||++|+++ +..|+.+..|+++||+++++++||++ ++|+|++.||++|.
T Consensus 81 ~~~~~~~la~~Aa~~aL~~a-~~~~~~Id~li~~s~~~-~~~P~~a~~i~~~lgl~~~~~~~dv~~~~C~~~~~al~~A~ 158 (361)
T cd00831 81 ALEEARELAEEAARGALDEA-GLRPSDIDHLVVNTSTG-NPTPSLDAMLINRLGLRPDVKRYNLGGMGCSAGAIALDLAK 158 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCCHHHCCEEEEECCCC-CCCCCHHHHHHHHhCCCcccchhccccccchhHHHHHHHHH
Confidence 58999999999999997 99999999999999887 78999999999999997679999998 89999999999999
Q ss_pred HHHhcCCCCCCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCCCCe---eEEeeccccccccccccc-
Q psy2407 126 NFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPEI---FQFDIGSNGYYSFEVMDT- 201 (245)
Q Consensus 126 ~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~~i---~~~~~~~~g~~~~~~~~~- 201 (245)
.++++|.. ++||||++|.+|..+++++. +.. .+...+|||||+|+||++.+.. ....+..++.+...+++.
T Consensus 159 ~~~~~~~~--~~aLvv~~e~~s~~~~~~d~-~~~--~~~~~lfGDgaaA~ll~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 233 (361)
T cd00831 159 DLLEANPG--ARVLVVSTELCSLWYRGPDH-RSM--LVGNALFGDGAAAVLLSNDPRDRRRERPLFELVRAASTLLPDSE 233 (361)
T ss_pred HHHHHCCC--CEEEEEEeecccceeCCCCc-HHH--hhhhhhccCCceEEEEEcCCCcccccccceeeecccceeeecCC
Confidence 99999955 99999999999987766540 111 1124689999999999986521 112222333333222211
Q ss_pred ----cCCCCC-CCcccchhhHHHHHHHHHHHHHHHHHHh--cchhhhh
Q psy2407 202 ----CRPIPD-SEAGNADLSLLSYLDCCAQSFKEYKKRV--QYKIIVY 242 (245)
Q Consensus 202 ----~~p~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 242 (245)
|++... ...+.++..+..+.+.+.+++++++++. |+++.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~L~~~~~g~~~~di 281 (361)
T cd00831 234 DAMGWHLGEEGLTFVLSRDVPRLVEKNLERVLRKLLARLGIGLFKLAF 281 (361)
T ss_pred CceEEEEEcceEEEEeChhHHHHHHHHHHHHHHHHhccccCCCccccc
Confidence 221111 1123445667777899999999999999 9887654
No 22
>PLN03171 chalcone synthase-like protein; Provisional
Probab=100.00 E-value=6.9e-32 Score=244.86 Aligned_cols=173 Identities=17% Similarity=0.231 Sum_probs=144.6
Q ss_pred eEEeEEeEecCCceecHHHHHHHc-C--CCh---------HHHh-hccceeeeecCCC----------------------
Q psy2407 4 VGIEAINLYGGSVFIDVIELAKYR-K--LDT---------VRFE-NLLMQQKSVSLPY---------------------- 48 (245)
Q Consensus 4 ~~I~~i~~~lP~~~v~~~~~~~~~-~--~~~---------~~~~-~~Gi~~r~~~~~~---------------------- 48 (245)
+.|.|+|+|+|+++++|+++.+.+ . .++ +||. ++||++||++.++
T Consensus 23 ~~I~gigt~~P~~~v~n~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 102 (399)
T PLN03171 23 AAVLAIGTANPANCVPQDEFPDFYFRATKSDHLTALKDKFKRICQELGVQKRYLHHTEELLSAHPEFLDHDAPSLDARLD 102 (399)
T ss_pred cEEEEEEeeCCCcccCHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCCCceeEeccccccccCccccccCCCCHHHHHH
Confidence 689999999999999999998863 1 111 2455 8999999998765
Q ss_pred ---CCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCc-ceeeecCcchhHHHHHHHH
Q psy2407 49 ---EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNC-RLFELKQACYSCTAGLQMA 124 (245)
Q Consensus 49 ---e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~-~~~dv~~~C~~~~~aL~~A 124 (245)
+++.+|+++|+++||+++ |++++|||+||++|+++++ .|+++.+++++||+++.+ .++++.+||+|+++||++|
T Consensus 103 ~~~~~a~~la~~Aa~~aL~~a-g~~~~dId~li~~t~t~~~-~P~~a~~v~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A 180 (399)
T PLN03171 103 IAADAVPELAAEAAKKAIAEW-GRPAADITHLVVTTNSGAH-IPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGAAALRLA 180 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEcCCCCC-CCchHHHHHHHhCCCcccceeeccCCccHHHHHHHHHH
Confidence 379999999999999997 9999999999999999975 899999999999996543 2577778999999999999
Q ss_pred HHHHhcCCCCCCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCCC
Q psy2407 125 INFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP 181 (245)
Q Consensus 125 ~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~ 181 (245)
..+++++.+ ++||||++|.+|..+++.+.++ ....+...+|||||+|+||++.+
T Consensus 181 ~~li~~~~~--~~vLVv~~e~~s~~~~~~d~~~-~~~~v~~~LFGDGAaA~vl~~~~ 234 (399)
T PLN03171 181 KDLAENNRG--ARVLVVAAEITLLLFNGPDEGC-FQTLLNQGLFGDGAAAVIVGADA 234 (399)
T ss_pred HHHHHhCCC--CeEEEEEEeccccccCCCCccc-HHhhhccccccCccEEEEEecCC
Confidence 999999955 9999999999999987766211 11112246899999999999753
No 23
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=99.97 E-value=2.1e-30 Score=233.73 Aligned_cols=228 Identities=18% Similarity=0.099 Sum_probs=180.4
Q ss_pred ceeEEeEEeEecCCceecHHHHHHHcC------------------------CChHHHh-hccceeeeecCCC--------
Q psy2407 2 IKVGIEAINLYGGSVFIDVIELAKYRK------------------------LDTVRFE-NLLMQQKSVSLPY-------- 48 (245)
Q Consensus 2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~------------------------~~~~~~~-~~Gi~~r~~~~~~-------- 48 (245)
++++|.++|+|+|+++++|+|+.+.++ .+.+++. ++||++||++.++
T Consensus 1 ~~~~I~~~g~~lP~~~v~n~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~~~~ 80 (372)
T PRK07515 1 HNVVISGTGLYTPPESISNEELVASFNAYVERFNAENAAAIAAGEVEALQPSSSEFIEKASGIKSRYVMDKEGILDPDRM 80 (372)
T ss_pred CCcEEEEEEeecCCccccHHHHHHHHhhhhhhhcccchhhhccccccccCCCCHHHhhhccCCceEEEecccccCccccc
Confidence 468999999999999999999987631 1356676 8899999987531
Q ss_pred ----------C--CHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchh
Q psy2407 49 ----------E--DPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYS 116 (245)
Q Consensus 49 ----------e--~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~ 116 (245)
+ +..+|+.+|+++||+++ |++++|||.||++++++++..|+.+..+++.||++ .++++++.+|+|
T Consensus 81 ~~~~~~r~~~~~~~~~~la~~Aa~~aL~~a-gl~~~~Id~li~~~~~~~~~~p~~a~~v~~~Lgl~--~~~~~v~~aCas 157 (372)
T PRK07515 81 RPRIPERSNDELSIQAEMGVAAARQALARA-GRTAEDIDAVIVACSNMQRAYPAMAIEIQQALGIE--GFAFDMNVACSS 157 (372)
T ss_pred CcccccccccchhhHHHHHHHHHHHHHHHc-CCCHHHCCEEEEECCCCCCCCcHHHHHHHHhcCCC--CcEEEecchhHH
Confidence 1 34689999999999997 99999999999999888888999999999999994 578999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCCC--------CeeEEee
Q psy2407 117 CTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP--------EIFQFDI 188 (245)
Q Consensus 117 ~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~--------~i~~~~~ 188 (245)
++.||.+|..+|++|.+ ++|||+++|.++..+++.+ +. ...+|||||+|+||++.+ .++...+
T Consensus 158 g~~al~~A~~~i~~g~~--~~vLvv~~e~~s~~~~~~d--~~-----~~~lfGDgAaA~vL~~~~~~~~~~~~~il~~~~ 228 (372)
T PRK07515 158 ATFGIQTAANAIRSGSA--RRVLVVNPEICSGHLNFRD--RD-----SHFIFGDVATAVIVERADTATSAGGFEILGTRL 228 (372)
T ss_pred HHHHHHHHHHHHHcCCC--CEEEEEeeecccccccccC--CC-----CCEEecCccEEEEEeeccccccCCCceEEEEEe
Confidence 99999999999999966 9999999999998776655 21 146799999999998742 3555554
Q ss_pred ccccccccccc---cc---cCCCC-CC----CcccchhhHHHHHHHHHHHHHHHHHHhcchhhhhc
Q psy2407 189 GSNGYYSFEVM---DT---CRPIP-DS----EAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIVYN 243 (245)
Q Consensus 189 ~~~g~~~~~~~---~~---~~p~~-~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (245)
.++++ +.+. ++ +.+.. .. ..|+|...++.+++.+.+++++++++.|+++.++.
T Consensus 229 ~~~~~--~~~~~~~G~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~L~~~gl~~~dId 292 (372)
T PRK07515 229 FTQFS--NNIRNNFGFLNRADPEGIGARDKLFVQEGRKVFKEVCPMVAEHIVEHLAENGLTPADVK 292 (372)
T ss_pred ecccc--cceecCCCCCCCCCccccccccceEEeccHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC
Confidence 44222 2111 11 11111 11 13688877888899999999999999999987653
No 24
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.
Probab=99.97 E-value=7.3e-30 Score=225.42 Aligned_cols=222 Identities=35% Similarity=0.451 Sum_probs=181.1
Q ss_pred eeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEe
Q psy2407 3 KVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCS 81 (245)
Q Consensus 3 ~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t 81 (245)
.++|.++++|+|+++++++++.+.++.+ ++. ++|+++|++..++++..+|+.+|+++||+++ |++++|||.||+++
T Consensus 1 ~v~I~~i~~~lP~~~v~~~~~~~~~~~~--~~~~~~gi~~r~~~~~~~~~~~l~~~a~~~aL~~a-g~~~~~Id~li~~~ 77 (324)
T cd00827 1 DVGIEAIGAYLPRYRVDNEELAEGLGVD--PGKYTTGIGQRHMAGDDEDVPTMAVEAARRALERA-GIDPDDIGLLIVAT 77 (324)
T ss_pred CccEEEEEecCCceeecHHHHHHHhCCC--cceeeeecceeEecCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEc
Confidence 3789999999999999999999988765 555 7899999998888999999999999999997 99999999999999
Q ss_pred ccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccccccccc
Q psy2407 82 ESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEW 161 (245)
Q Consensus 82 ~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~ 161 (245)
++++...|+.+.++++.||++ ++++++++++|+|++.||.+|..+|++|.+ +++||+++|.++...+... .
T Consensus 78 ~~~~~~~~~~~~~i~~~lg~~-~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~vlvv~~e~~~~~~~~~~-----~- 148 (324)
T cd00827 78 ESPIDKGKSAATYLAELLGLT-NAEAFDLKQACYGGTAALQLAANLVESGPW--RYALVVASDIASYLLDEGS-----A- 148 (324)
T ss_pred CCCCCCCccHHHHHHHHcCCC-CCceeehhhhhHHHHHHHHHHHHHHHcCCC--CEEEEEEEHHhhhcccCCC-----C-
Confidence 888777889999999999995 899999999999999999999999999966 9999999999988764211 1
Q ss_pred ccccccccceeEEEEecCCC-----CeeEEeecccccccc---ccccccCCCC--C--C--Ccccc--hhhHHHHHHHHH
Q psy2407 162 AFFEPSGGAGAVAMLISDKP-----EIFQFDIGSNGYYSF---EVMDTCRPIP--D--S--EAGNA--DLSLLSYLDCCA 225 (245)
Q Consensus 162 ~~~~~~~GDGAaA~ll~~~~-----~i~~~~~~~~g~~~~---~~~~~~~p~~--~--~--~~~~g--~~~~~~~~~~~~ 225 (245)
...+|||||+|+||++++ +++.....+++.+.+ ...++..+.+ . . ..+++ +.....+.+.+.
T Consensus 149 --~~~~~gdgaaA~ll~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (324)
T cd00827 149 --LEPTLGDGAAAMLVSRNPGILAAGIVSTHSTSDPGYDFSPYPVMDGGYPKPCKLAYAIRLTAEPAGRAVFEAAHKLIA 226 (324)
T ss_pred --ccccccCceEEEEEecCcccccCCceeeeeecccccccCccceeccCCCcchhhhhhcceeecCCccchHHHHhHHHH
Confidence 256899999999998754 577777777777543 1122211111 0 0 12444 355666788889
Q ss_pred HHHHHHHHHhcch
Q psy2407 226 QSFKEYKKRVQYK 238 (245)
Q Consensus 226 ~~~~~~~~~~~~~ 238 (245)
+++++.+++.+++
T Consensus 227 ~~~~~~l~~~~~~ 239 (324)
T cd00827 227 KVVRKALDRAGLS 239 (324)
T ss_pred HHHHHHHHHcccc
Confidence 9999999998876
No 25
>PF01154 HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A synthase N terminal; InterPro: IPR013528 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase. Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the N-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1X9E_B 2HDB_B 2WYA_C 2P8U_A 3V4X_A 3V4N_C 3LEH_A 1TXT_D 1TVZ_A 2FA0_A ....
Probab=99.97 E-value=1.4e-29 Score=201.61 Aligned_cols=167 Identities=47% Similarity=0.699 Sum_probs=140.2
Q ss_pred ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407 2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC 80 (245)
Q Consensus 2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~ 80 (245)
++|+|.+|+.|+|..+++.+++++..|.+++|+. ..|++++++..++|++.+|++.|++++|++. ++++++|+.|+++
T Consensus 3 ~~VGI~~i~~y~p~~~v~~~~La~~~g~d~~K~~~glgq~~~av~~~~ED~vTmA~nAa~~ll~~~-~id~~~Ig~l~vg 81 (174)
T PF01154_consen 3 QNVGIDAIEFYIPRYYVDQEELAEARGVDPGKYTIGLGQEKMAVPPPDEDIVTMAANAAKPLLDRY-NIDPDDIGRLIVG 81 (174)
T ss_dssp SSEEEEEEEEE-ESEEEEHHHHHHHTTS-TCHHHTTT--SEEEE--TTS-HHHHHHHHHHTTHHHH-T-HHHHEEEEEEE
T ss_pred ccccEeEEEEecCceEecHHHHHHHhCCCHHHhhhhcCeeEEEeCCCcccHHHHHHHHHHHHHHHc-CCCHHHccEEEEe
Confidence 4799999999999999999999999999999998 7899999999999999999999999999997 9999999999999
Q ss_pred eccCCCCCCcHHHHHHHHcCC--CCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccc
Q psy2407 81 SESGIDFGKSMSTYIHHYLGL--NRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELT 158 (245)
Q Consensus 81 t~~~~~~~p~~a~~l~~~LGl--~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~ 158 (245)
|.+..+...+.+.+|++.||+ ++++..+|+.++|.|++.||+.|..+++++.++++++|||++|...+... .
T Consensus 82 TES~vD~sKs~~t~v~~ll~~s~~~~~~~~e~k~ACygGTaAL~~a~~~v~s~~~~g~~aLVVasDiA~y~~g--~---- 155 (174)
T PF01154_consen 82 TESGVDKSKSISTYVHQLLGLSGNPDCRGVEMKQACYGGTAALQNAVNWVASSPWDGRKALVVASDIARYDLG--S---- 155 (174)
T ss_dssp -SS-SBSSS-HHHHHHHHTTTTT-SSSEEEEEESGGGHHHHHHHHHHHHHCSTTSTTEEEEEEEEEEE--STT--T----
T ss_pred ccccccccccHHHHHHHHhCcCCCCceeeeehhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccccccCCC--C----
Confidence 999999999999999999999 45677899999999999999999999999866778999999999975421 1
Q ss_pred cccccccccccceeEEEEecCC
Q psy2407 159 MEWAFFEPSGGAGAVAMLISDK 180 (245)
Q Consensus 159 ~~~~~~~~~~GDGAaA~ll~~~ 180 (245)
.+++.|.||+|+|++++
T Consensus 156 -----~e~TqGAGAVAmLi~~n 172 (174)
T PF01154_consen 156 -----AEPTQGAGAVAMLIGPN 172 (174)
T ss_dssp -----TGGG-EEEEEEEEEECS
T ss_pred -----ccccccceeEEEEecCC
Confidence 25789999999999976
No 26
>PLN03172 chalcone synthase family protein; Provisional
Probab=99.96 E-value=2e-28 Score=221.60 Aligned_cols=227 Identities=16% Similarity=0.190 Sum_probs=164.8
Q ss_pred eEEeEEeEecCCceecHHHHHHHcC-------CCh-H-HH----hhccceeeeecCCCC---------------------
Q psy2407 4 VGIEAINLYGGSVFIDVIELAKYRK-------LDT-V-RF----ENLLMQQKSVSLPYE--------------------- 49 (245)
Q Consensus 4 ~~I~~i~~~lP~~~v~~~~~~~~~~-------~~~-~-~~----~~~Gi~~r~~~~~~e--------------------- 49 (245)
..|.++|+.+|++.++++++.+++. .+. + ++ .++||++||+..+++
T Consensus 17 ~~I~~igta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r~~ 96 (393)
T PLN03172 17 ATILAIGKATPANCVSQADYPDYYFRITNSEHMTELKEKFKRMCDKSMIKKRYMHLTEEILKENPNMCAYMAPSLDARQD 96 (393)
T ss_pred eEEEEEEecCCCccccHHHHHHHHHHHhcccCchHHHHHHHHHHHhcCCCceeEeccchhhhhCccccccCCCCHHHHHH
Confidence 5799999999999999999887542 111 1 12 268999999965210
Q ss_pred ----CHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcce-eeecCcchhHHHHHHHH
Q psy2407 50 ----DPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL-FELKQACYSCTAGLQMA 124 (245)
Q Consensus 50 ----~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~-~dv~~~C~~~~~aL~~A 124 (245)
...+|+++|+++||+++ |++++|||+||++|+|+. ..|+.+.+|+++||+++.+.+ ++++.||+|++.||++|
T Consensus 97 ~~~~~a~~La~~Aa~~aL~~a-g~~~~dId~ii~~t~t~~-~~P~~a~~l~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A 174 (393)
T PLN03172 97 MVVVEVPKLGKEAAAKAIKEW-GQPKSKITHLVFCTTSGV-DMPGADYQLTKLLGLKPSVKRFMMYQQGCFAGGTVLRLA 174 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEccCCC-cCchHHHHHHHHhCCCCCceEEeeeCCchHHHHHHHHHH
Confidence 14589999999999997 999999999999999984 489999999999999766654 78899999999999999
Q ss_pred HHHHhcCCCCCCeEEEEEeccccccc-cCcccccccccccccccccceeEEEEecCCCC---------eeEEe----ecc
Q psy2407 125 INFILSKVSPGAKALVIATDISRFFV-TEDKNELTMEWAFFEPSGGAGAVAMLISDKPE---------IFQFD----IGS 190 (245)
Q Consensus 125 ~~~i~sg~~~~~~aLVv~~e~~s~~~-~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~~---------i~~~~----~~~ 190 (245)
..+++++.. ++||||++|.+|..+ ++.+ +.........+|||||+|+||++++. ++... ..+
T Consensus 175 ~~~~~~~~~--~~vLVV~~E~~S~~~~~~~d--~~~~~~v~~~LFGDGAaAvVl~~~~~~~~~~~~~~i~~~~~~~~~~t 250 (393)
T PLN03172 175 KDLAENNAG--SRVLVVCSEITAVTFRGPSD--THLDSLVGQALFGDGAAAVIIGADPDTKIERPLFEIVSAAQTILPDS 250 (393)
T ss_pred HHHHHcCCC--CeEEEEEEehhhhhhccccc--ccHHhhhccchhcCceEEEEEecCCCCcccCceeEEeeeccEEecCC
Confidence 999999954 999999999999543 4444 21111123578999999999987431 22211 222
Q ss_pred ccccccccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHhcchhhh
Q psy2407 191 NGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIV 241 (245)
Q Consensus 191 ~g~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (245)
++.+...+.+ .+....+. +.......+.+.+.+++++++.|+++.+
T Consensus 251 ~~~~~~~i~~----~G~~~~l~-~~vp~~~~~~i~~~~~~~L~~~gl~~~d 296 (393)
T PLN03172 251 DGAIDGHLRE----VGLTFHLL-KDVPGLISKNIEKSLVEAFAPIGINDWN 296 (393)
T ss_pred cccccceEEc----CCcEEEEe-chHHHHHHHHHHHHHHHHhhhcCCCccc
Confidence 2322221111 10000112 5556666888899999999999987554
No 27
>PLN03168 chalcone synthase; Provisional
Probab=99.96 E-value=3.6e-28 Score=219.85 Aligned_cols=227 Identities=14% Similarity=0.113 Sum_probs=162.2
Q ss_pred eEEeEEeEecCCceecHHHHHHHcC------CCh---HHHh----hccceeeeecCCCC---------------------
Q psy2407 4 VGIEAINLYGGSVFIDVIELAKYRK------LDT---VRFE----NLLMQQKSVSLPYE--------------------- 49 (245)
Q Consensus 4 ~~I~~i~~~lP~~~v~~~~~~~~~~------~~~---~~~~----~~Gi~~r~~~~~~e--------------------- 49 (245)
..|.++|+.+|++.++++++.+++. ..+ +++. ++||++||+..+++
T Consensus 16 ~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~ps~~~r~~ 95 (389)
T PLN03168 16 ACVLGIGTAVPPAEFLQSEYPDFFFNITNCGEKEALKAKFKRICDKSGIRKRHMFLTEEVLKANPGICTYMEPSLNVRHD 95 (389)
T ss_pred eEEEEEeccCCCcccCHHHHHHHHHHhccccCcHHHHHHHHHHHHhcCCCeeeeeccccchhhCcccccccCCCHHHHHH
Confidence 6799999999999999999887541 111 1222 68999999965221
Q ss_pred ----CHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCc-ceeeecCcchhHHHHHHHH
Q psy2407 50 ----DPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNC-RLFELKQACYSCTAGLQMA 124 (245)
Q Consensus 50 ----~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~-~~~dv~~~C~~~~~aL~~A 124 (245)
.+.+|+++|+++||+++ |++++|||+||++|+|+ +..|+++.+|+++||+++.+ .++|++.||+||++||.+|
T Consensus 96 ~~~~~a~~La~~Aa~~AL~~a-g~~~~dId~lI~~T~Tg-~~~Ps~a~~l~~~LGl~~~~~r~~d~~~gC~g~~~aL~~A 173 (389)
T PLN03168 96 IVVVQVPKLAAEAAQKAIKEW-GGRKSDITHIVFATTSG-VNMPGADHALAKLLGLKPTVKRVMMYQTGCFGGASVLRVA 173 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCHHHCCEEEEECCCC-CCCccHHHHHHHHhCcCCcceeeeeeCCccHHHHHHHHHH
Confidence 36799999999999997 99999999999999999 56899999999999997554 3899999999999999999
Q ss_pred HHHHhcCCCCCCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCCC------CeeEEeecccccccccc
Q psy2407 125 INFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP------EIFQFDIGSNGYYSFEV 198 (245)
Q Consensus 125 ~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~------~i~~~~~~~~g~~~~~~ 198 (245)
..+++++.. ++||||++|.+|..++..+.. .........+|||||+|+||++++ +++.+.... ++ .+
T Consensus 174 ~~~i~~~~~--~~VLVV~~E~~S~~~~~~~~~-~~~~~~~~~LFGDGAaAvvl~~~~~~~~~~~~~~~~~~~--~~--~~ 246 (389)
T PLN03168 174 KDLAENNKG--ARVLAVASEVTAVTYRAPSEN-HLDGLVGSALFGDGAGVYVVGSDPKPEVEKALFEVHWAG--ET--IL 246 (389)
T ss_pred HHHHHhCCC--CEEEEEEEehhhhhccCcccc-cHHHHhccccccCccEEEEEecCCCCccCCcceEEEeee--eE--EE
Confidence 999999955 999999999999876432110 011112357899999999998743 233333221 10 11
Q ss_pred cc-----ccCCCCCC-CcccchhhHHHHHHHHHHHHHHHHHHhcchh
Q psy2407 199 MD-----TCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKRVQYKI 239 (245)
Q Consensus 199 ~~-----~~~p~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (245)
++ .|...... ..+--+.......+.+.+.++++++..|..+
T Consensus 247 p~s~~~~~~~~~~~g~~~~l~~~vp~~i~~~~~~~l~~~l~~~~~~~ 293 (389)
T PLN03168 247 PESDGAIDGHLTEAGLIFHLMKDVPGLISKNIEKFLNEARKCVGSPD 293 (389)
T ss_pred cCCCCccCceEecCceEEEECHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 10 11111111 0111123444556777888888888877653
No 28
>PLN03170 chalcone synthase; Provisional
Probab=99.96 E-value=3.3e-28 Score=220.79 Aligned_cols=230 Identities=17% Similarity=0.188 Sum_probs=167.1
Q ss_pred eEEeEEeEecCCceecHHHHHHHcC-------CCh-H-HHh----hccceeeeecCCCC---------------------
Q psy2407 4 VGIEAINLYGGSVFIDVIELAKYRK-------LDT-V-RFE----NLLMQQKSVSLPYE--------------------- 49 (245)
Q Consensus 4 ~~I~~i~~~lP~~~v~~~~~~~~~~-------~~~-~-~~~----~~Gi~~r~~~~~~e--------------------- 49 (245)
..|.+||+.+|++.++++++.++.. .+. + ++. ++||++||+..+++
T Consensus 21 ~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r~~ 100 (401)
T PLN03170 21 ATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKRYMHLTEEYLAENPNMCAYMAPSLDARQD 100 (401)
T ss_pred eEEEEEeecCCCccccHHHHHHHHHHHccccCchhHHHHHHHHHHhCCCCceeEeccccchhhCccccccCCCCHHHHHH
Confidence 6799999999999999999887541 221 1 122 68999999965211
Q ss_pred ----CHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCc-ceeeecCcchhHHHHHHHH
Q psy2407 50 ----DPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNC-RLFELKQACYSCTAGLQMA 124 (245)
Q Consensus 50 ----~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~-~~~dv~~~C~~~~~aL~~A 124 (245)
...+|+++|+++||+++ |++++|||+||++|+++. ..|+.+.+|+++||+++.+ .+++++.||+|++.||++|
T Consensus 101 ~~~~~a~~La~~Aa~~AL~~a-g~~~~dId~lI~~T~Tg~-~~Ps~a~~l~~~LGl~~~~~r~~d~~~gC~G~~~aL~~A 178 (401)
T PLN03170 101 IVVVEVPKLGKAAAQKAIKEW-GQPKSKITHLVFCTTSGV-DMPGADYQLTKMLGLRPSVNRLMMYQQGCFAGGTVLRVA 178 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEccCCC-CCChHHHHHHHHhCcCcccHHHHhhcChhHHHHHHHHHH
Confidence 25679999999999997 999999999999999884 4899999999999997554 4799999999999999999
Q ss_pred HHHHhcCCCCCCeEEEEEeccccccc-cCcccccccccccccccccceeEEEEecCCCC--ee--EEeeccccccccccc
Q psy2407 125 INFILSKVSPGAKALVIATDISRFFV-TEDKNELTMEWAFFEPSGGAGAVAMLISDKPE--IF--QFDIGSNGYYSFEVM 199 (245)
Q Consensus 125 ~~~i~sg~~~~~~aLVv~~e~~s~~~-~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~~--i~--~~~~~~~g~~~~~~~ 199 (245)
..+++++.. ++||||++|.+|..+ ++.+..... .....+|||||+|+||++.++ +. .+.+.++++.. ++
T Consensus 179 ~~l~~~~~~--~~vLVV~~E~~S~~~~~~~~~~~~~--~~~~~LFGDGAaAvVl~~~~~~~~~~~~~~l~~~~~~~--~p 252 (401)
T PLN03170 179 KDLAENNRG--ARVLVVCSEITAVTFRGPSESHLDS--MVGQALFGDGAAAVIVGADPDERVERPLFQLVSASQTI--LP 252 (401)
T ss_pred HHHHHcCCC--CeEEEEEEehhhhccCCcccchhhh--hhhhhhhhceeEEEEEecCCcccccCCceEEeeccceE--ec
Confidence 999999954 999999999999887 343310111 123568999999999987542 11 12333333211 11
Q ss_pred c---c--cCCC-CCCCcccchhhHHHHHHHHHHHHHHHHHHhcchhhh
Q psy2407 200 D---T--CRPI-PDSEAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIV 241 (245)
Q Consensus 200 ~---~--~~p~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (245)
+ . |.-. .+....-.+.......+.+.+.+++++++.|+++.+
T Consensus 253 ~~~~~~~~~i~~~G~~~~l~~~vp~~~~~~i~~~v~~~L~~~gl~~~d 300 (401)
T PLN03170 253 DSEGAIDGHLREVGLTFHLLKDVPGLISKNIERSLEEAFKPLGITDYN 300 (401)
T ss_pred CCcccccceEEcCCeEEEEehHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 1 0 1100 000011134556677889999999999999987654
No 29
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=99.96 E-value=1.1e-28 Score=205.72 Aligned_cols=173 Identities=21% Similarity=0.308 Sum_probs=134.5
Q ss_pred eeEEeEEeEecCCceecHHHHHHHc----CCCh-----HHHh----hccceeeeecCCC---------------------
Q psy2407 3 KVGIEAINLYGGSVFIDVIELAKYR----KLDT-----VRFE----NLLMQQKSVSLPY--------------------- 48 (245)
Q Consensus 3 ~~~I~~i~~~lP~~~v~~~~~~~~~----~~~~-----~~~~----~~Gi~~r~~~~~~--------------------- 48 (245)
..+|.+||+.+|+++++++++.+.+ +.+. +++. ++||++||...+.
T Consensus 14 ~A~Il~IgTA~P~~~~~Q~~~~e~~~~~~~~~~~~~~~~~l~ri~~~sgI~~R~~vl~~~~~~~~p~~~~~~~ps~~~R~ 93 (226)
T PF00195_consen 14 PAYILSIGTAVPPHRITQEEIAEFFFRITHSDDLPDLRRKLRRIFENSGIEKRHSVLPEEWLDEYPSFWDFADPSLAERN 93 (226)
T ss_dssp SEEEEEEEEE-SSEEEEGCCHHHHHHHHTT-TTGHHHHHHHHHHHHHST-SEEEESS-HHHHHTSGGGHSSSSS-HHHHH
T ss_pred CeEEEEEEEeCCCceecHHHHHHHHHHHhcccchhHHHHHHHhhhhccccceeccccchhhhhcCcchhhccCccHHHHH
Confidence 5789999999999999999987652 3222 2332 6899999997541
Q ss_pred ----CCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeec-CcchhHHHHHHH
Q psy2407 49 ----EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK-QACYSCTAGLQM 123 (245)
Q Consensus 49 ----e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~-~~C~~~~~aL~~ 123 (245)
+...+|+.+|+++||+++ |++++||++||++|+|+ ...|++..+|.++|||++++..+.+. .||++++.+|..
T Consensus 94 ~~~~~~a~~L~~~Aa~~AL~~~-g~~~~dIthlv~vs~TG-~~~PglD~~l~~~LgL~~~v~R~~i~~~GC~gg~~~L~~ 171 (226)
T PF00195_consen 94 ALYAEEAPPLAEEAARKALAEA-GLDPSDITHLVTVSCTG-IAAPGLDARLINRLGLRPDVQRTPIFGMGCAGGAAGLRR 171 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TS-GGGECEEEEEESSS-SECS-HHHHHHHHHT--TTSEEEEEES-GGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCCCcccceEEEEecCC-cCCCchhHHHHhcCCCCCCcEEEEEeccchhhHHHHHHH
Confidence 236789999999999998 99999999999999998 67899999999999999999888885 799999999999
Q ss_pred HHHHHhcCCCCCCeEEEEEeccccccccC-cccccccccccccccccceeEEEEecCCC
Q psy2407 124 AINFILSKVSPGAKALVIATDISRFFVTE-DKNELTMEWAFFEPSGGAGAVAMLISDKP 181 (245)
Q Consensus 124 A~~~i~sg~~~~~~aLVv~~e~~s~~~~~-~~~~~~~~~~~~~~~~GDGAaA~ll~~~~ 181 (245)
|..+.+++ |+.+||||++|.+|..+.. .+. .....++..+|||||+|+||+.+|
T Consensus 172 A~~~~~~~--p~a~VLvv~vElcsl~~~~~~~~--~~~~lv~~aLFgDGaAA~vv~~dP 226 (226)
T PF00195_consen 172 AKDIARAN--PGARVLVVCVELCSLHFQAPNDD--SLDNLVANALFGDGAAAVVVGADP 226 (226)
T ss_dssp HHHHHHHS--TT-EEEEEEEEEGGGTHHHCCTT--SHHHHHHHHHB-EEEEEEEEESS-
T ss_pred HHHHHhCC--ccceEEEEEEEeeEEEEecCCcc--cHHHHhHHhhhcCCceEEEEccCC
Confidence 99999999 6799999999999987753 231 112233467899999999998764
No 30
>PLN03173 chalcone synthase; Provisional
Probab=99.96 E-value=1.3e-27 Score=216.03 Aligned_cols=227 Identities=19% Similarity=0.234 Sum_probs=164.7
Q ss_pred eEEeEEeEecCCceecHHHHHHHcC------CCh--H-HH----hhccceeeeecCCCC---------------------
Q psy2407 4 VGIEAINLYGGSVFIDVIELAKYRK------LDT--V-RF----ENLLMQQKSVSLPYE--------------------- 49 (245)
Q Consensus 4 ~~I~~i~~~lP~~~v~~~~~~~~~~------~~~--~-~~----~~~Gi~~r~~~~~~e--------------------- 49 (245)
..|.++|+.+|++.++++++.+... ..+ . ++ .++||++||+..+++
T Consensus 17 ~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r~~ 96 (391)
T PLN03173 17 ATIMAIGTSTPPNCVDQSTYPDYYFRITNSEHKVELKEKFKRMCEKSMIKKRYMHLTEEILKENPSVCEYMAPSLDARQD 96 (391)
T ss_pred eEEEEEEccCCCcccCHHHHHHHHHHHhccccchhHHHHHHHHHHhCCCCeeeEeccchhhhhCcccccccCCCHHHHHH
Confidence 5799999999999999999886541 111 1 12 268999999865211
Q ss_pred ----CHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcc-eeeecCcchhHHHHHHHH
Q psy2407 50 ----DPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCR-LFELKQACYSCTAGLQMA 124 (245)
Q Consensus 50 ----~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~-~~dv~~~C~~~~~aL~~A 124 (245)
.+.+|+++|+++||+++ |++++|||+||++|+|+. ..|+.+.+|+++||+++.+. +++++.||+|++.||++|
T Consensus 97 ~~~~~a~~La~~Aa~~AL~~a-g~~~~dId~li~~t~t~~-~~P~~a~~l~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A 174 (391)
T PLN03173 97 MVVVEVPKLGKEAAAKAIKEW-GQPKSKITHLVFCTTSGV-DMPGADYQLTKLLGLRSSVKRFMMYQQGCFAGGTVLRLA 174 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEccCCC-cccHHHHHHHHHhCCCccceeeehhcCccHHHHHHHHHH
Confidence 14689999999999997 999999999999999984 47999999999999976553 578899999999999999
Q ss_pred HHHHhcCCCCCCeEEEEEeccccc-cccCcccccccccccccccccceeEEEEecCCC--CeeE--Ee---------ecc
Q psy2407 125 INFILSKVSPGAKALVIATDISRF-FVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP--EIFQ--FD---------IGS 190 (245)
Q Consensus 125 ~~~i~sg~~~~~~aLVv~~e~~s~-~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~--~i~~--~~---------~~~ 190 (245)
..+++++. .++||||++|.+|. ..++++ +.........+|||||+|+||++++ ++.. +. ..+
T Consensus 175 ~~~~~~~~--~~~vLVV~~E~~S~~~~~~~d--~~~~~~v~~~LFGDGAaAvvl~~~~~~~~~~~~~~l~~~~~~~~~~t 250 (391)
T PLN03173 175 KDLAENNK--GARVLVVCSEITAVTFRGPSD--THLDSLVGQALFGDGAAAIIIGSDPVLGVEKPLFELVSAAQTILPDS 250 (391)
T ss_pred HHHHHhCC--CCeEEEEEEehhhhhhCCccc--cchhhhhhhhhhcCceEEEEEeCCCCCCcCCcceEEEeeeeEEecCC
Confidence 99999994 49999999999995 334444 2111112357899999999998743 1100 11 122
Q ss_pred ccccccccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHhcchhhh
Q psy2407 191 NGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIV 241 (245)
Q Consensus 191 ~g~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (245)
++.+...+ +..+....+. +...+...+.+.+.++++++++|+++.+
T Consensus 251 ~~~~~~~i----~~~G~~~~l~-~~vp~~~~~~~~~~i~~~L~~~gl~~~d 296 (391)
T PLN03173 251 DGAIDGHL----REVGLTFHLL-KDVPGLISKNVEKSLTEAFKPLGISDWN 296 (391)
T ss_pred ccceeeEE----EcCceEEEEe-cHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 23222111 1111000122 4556666889999999999999987654
No 31
>KOG1393|consensus
Probab=99.95 E-value=2.4e-27 Score=205.60 Aligned_cols=221 Identities=31% Similarity=0.426 Sum_probs=198.4
Q ss_pred eeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEe
Q psy2407 3 KVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCS 81 (245)
Q Consensus 3 ~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t 81 (245)
+++|.++..|+|.+.|+++|++.+.|.+..++. +.|..+-.++.+.|+...|+..+.++++++. +++++.|+.|-++|
T Consensus 11 dvGI~aieiyfP~~yV~Q~elEk~d~vs~gKytIGLGq~~MgfcsdrEDi~Sl~ltvvs~Lmery-~i~~~~IGRLEVGT 89 (462)
T KOG1393|consen 11 DVGIIAIEIYFPSQYVDQEELEKFDGVSAGKYTIGLGQTQMGFCSDREDIISLSLTVVSRLMERY-NIDPDSIGRLEVGT 89 (462)
T ss_pred ccceeEEEEEcCccccChhhHhhcCCccccceEeccCcceecccCchhhhhhhhHHHHHHHHHHh-CCChhhcceEEecc
Confidence 799999999999999999999999999999988 8899998999889999999999999999997 99999999999999
Q ss_pred ccCCCCCCcHHHHHHHHcC--CCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccccccc
Q psy2407 82 ESGIDFGKSMSTYIHHYLG--LNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTM 159 (245)
Q Consensus 82 ~~~~~~~p~~a~~l~~~LG--l~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~ 159 (245)
.|-.+...++-..|++.++ -+.++..+|..++|.||..||..|.++|++..++++.+|||++|..-+. +++
T Consensus 90 ETiiDKSKSVKt~LMqLF~~sgNtdIEGiDttnACYGGtaALfnavnWiESssWDGr~aivV~gDIAvY~---~G~---- 162 (462)
T KOG1393|consen 90 ETIIDKSKSVKTVLMQLFEESGNTDIEGIDTTNACYGGTAALFNAVNWIESSSWDGRYAIVVCGDIAVYA---KGN---- 162 (462)
T ss_pred eeccccchHHHHHHHHHhhhcCCCccccccccccccccHHHHHHHhhhhhhcccCCceeEEEEeeEEEec---CCC----
Confidence 9988889999999999998 5567889999999999999999999999998889999999999998654 221
Q ss_pred ccccccccccceeEEEEecCCCCeeEEeeccccccccccccccCCCCCC--CcccchhhHHHHHHHHHHHHHHHHHHhc
Q psy2407 160 EWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDS--EAGNADLSLLSYLDCCAQSFKEYKKRVQ 236 (245)
Q Consensus 160 ~~~~~~~~~GDGAaA~ll~~~~~i~~~~~~~~g~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
++++-|.||+|+|++++..+ -++-+..+.|-.+.+|||+|...+ |.+||++|+.||+++++.+|..|.++..
T Consensus 163 ----aRpTGGAgAVAmLIgPnApi-~ferglr~thM~hayDFyKPdl~SEyPvVDGklSi~cYl~Ald~cY~~~~kK~~ 236 (462)
T KOG1393|consen 163 ----ARPTGGAGAVAMLIGPNAPI-IFERGLRATHMQHAYDFYKPDLLSEYPVVDGKLSIQCYLSALDRCYTVYRKKIA 236 (462)
T ss_pred ----CCCCCCcceEEEEEcCCCce-EecccchhhhhhhhhhccCCCCCCcCceecCeehHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999998654 355556688888899999998765 6899999999999999999999987765
No 32
>PLN02932 3-ketoacyl-CoA synthase
Probab=99.94 E-value=7.3e-26 Score=207.63 Aligned_cols=188 Identities=15% Similarity=0.117 Sum_probs=151.3
Q ss_pred eeEEeEEeEecCCc--eecHHHHHHHc------C-CCh---------HHHh-hccceeeeecCCCC--------------
Q psy2407 3 KVGIEAINLYGGSV--FIDVIELAKYR------K-LDT---------VRFE-NLLMQQKSVSLPYE-------------- 49 (245)
Q Consensus 3 ~~~I~~i~~~lP~~--~v~~~~~~~~~------~-~~~---------~~~~-~~Gi~~r~~~~~~e-------------- 49 (245)
.++++..++|.|+. +++.+.+.+.. | .++ +|+. ++||.+|++..+..
T Consensus 67 ~vyl~d~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~rsGig~~t~~p~~~~~~~~~~~~~~~~~ 146 (478)
T PLN02932 67 PVYLVDFSCYLPPSHLKASIQTIMGHVRRVREAGAWKQESDYLMDFCEKILERSGLGQETYIPEGLQCLPLQQNLAVSRK 146 (478)
T ss_pred cEEEEeeeeecCcccccccHHHHHHHHHhhcccCCCCccchhHHHHHHHHHHHcCCCCceeeccccccCCHHHHHHHHHH
Confidence 58999999999985 67777776543 1 211 2343 78999998875442
Q ss_pred CHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeec-CcchhHHHHHHHHHHHH
Q psy2407 50 DPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK-QACYSCTAGLQMAINFI 128 (245)
Q Consensus 50 ~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~-~~C~~~~~aL~~A~~~i 128 (245)
.+.+|+.+|+++||+++ |++|+|||+||++|+++. ..|+.+..|+++||+++++.+||++ +||+|++.+|.+|.+++
T Consensus 147 ea~~la~~Aa~~aL~~a-gi~p~dId~lIv~tst~~-~~Pslaa~V~~~lGlr~~i~~fdL~gmGCSggl~aL~lA~~ll 224 (478)
T PLN02932 147 ETEEVIIGAVDNLFRNT-GISPSDIGILVVNSSTFN-PTPSLSSILVNKFKLRDNIKSLNLGGMGCSAGVIAIDAAKSLL 224 (478)
T ss_pred HHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEccCCC-CCCcHHHHHHHHhCCCCCceEEEeccchhhhHHHHHHHHHHHH
Confidence 37899999999999997 999999999999999985 8999999999999997789999998 89999999999999999
Q ss_pred hcCCCCCCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCCC--------Cee---EEeeccccccccc
Q psy2407 129 LSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP--------EIF---QFDIGSNGYYSFE 197 (245)
Q Consensus 129 ~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~--------~i~---~~~~~~~g~~~~~ 197 (245)
+++.. ++||||++|.+|..+++.+. |.+. ....+|||||+|+||+..+ +++ ..+.++|+..++.
T Consensus 225 ~~~~~--~~aLVVstE~~S~~~~~~d~-r~~l--~t~~LFgDGAAAvlLs~~~~~~~~~~~~L~~~v~t~~~ad~~~~~~ 299 (478)
T PLN02932 225 QVHRN--TYALVVSTENITQNLYLGNN-KSML--VTNCLFRIGGAAILLSNRSRDRKRAKYELVHTVRVHTGADDRSYEC 299 (478)
T ss_pred HcCCC--CeEEEEEEeecccccCCCcc-hhhh--ccceeecccceEEEEecccccccCcceEEEeeeeeeeccCCCcccc
Confidence 99954 99999999999999987652 2221 1367899999999999643 244 4455566655443
No 33
>PLN02377 3-ketoacyl-CoA synthase
Probab=99.92 E-value=3.1e-24 Score=198.02 Aligned_cols=188 Identities=16% Similarity=0.152 Sum_probs=148.6
Q ss_pred eeEEeEEeEecCCc--eecHHHHHHHc---C-CChHHH------h-hccceeeeecC-------CC-------CCHHHHH
Q psy2407 3 KVGIEAINLYGGSV--FIDVIELAKYR---K-LDTVRF------E-NLLMQQKSVSL-------PY-------EDPVSFA 55 (245)
Q Consensus 3 ~~~I~~i~~~lP~~--~v~~~~~~~~~---~-~~~~~~------~-~~Gi~~r~~~~-------~~-------e~~~~la 55 (245)
.++++..++|.|+. +++.+.+.+.. | .+++.+ . ++|+.+..+.+ ++ +.+.+++
T Consensus 97 ~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ri~~~sgig~~t~~p~~~~~~~~~~~~~~~~~ea~~l~ 176 (502)
T PLN02377 97 PVYLVDYSCYRAPDHLKAPFARFMEHSRLTGDFDDSSLEFQRKILERSGLGEDTYVPEAMHYIPPRPSMAAAREEAEQVM 176 (502)
T ss_pred CEEEEeeeeecCCccccccHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCCccccCchhccCCccchHHHHHHHHHHHH
Confidence 48999999999985 67788777653 2 344332 2 67886633322 11 3478999
Q ss_pred HHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeec-CcchhHHHHHHHHHHHHhcCCCC
Q psy2407 56 INAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK-QACYSCTAGLQMAINFILSKVSP 134 (245)
Q Consensus 56 ~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~-~~C~~~~~aL~~A~~~i~sg~~~ 134 (245)
..|+++||+++ |++|+|||+||+ ++|+++..|+.+..|+++||+++++.+||++ +||+||+.+|++|.++++++..
T Consensus 177 ~~A~~~aL~ka-Gi~p~dID~LVv-~cS~~~~~PSlaa~V~~~LGlr~~v~afdL~gmGCsggl~aL~lA~~ll~~~~~- 253 (502)
T PLN02377 177 FGALDNLFANT-NVNPKDIGILVV-NCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDMLQVHRN- 253 (502)
T ss_pred HHHHHHHHHHc-CCCHHHCCEEEE-ECCCCCCCCcHHHHHHHHhCCCCCCeEEecccchhhHHHHHHHHHHHHHHcCCC-
Confidence 99999999997 999999999987 7889888999999999999997789999998 7999999999999999999954
Q ss_pred CCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCCC-----------CeeEEeeccccccccc
Q psy2407 135 GAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP-----------EIFQFDIGSNGYYSFE 197 (245)
Q Consensus 135 ~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~-----------~i~~~~~~~~g~~~~~ 197 (245)
++||||++|..|..+++.++ +.. .++..+|||||+|+||++.+ +++..+..++++..+.
T Consensus 254 -~~aLVVstE~~S~~~~~~d~-~s~--lv~n~LFgDGAaAvlLs~~~~~~~~a~~~l~~iv~t~~~~d~~~~~~ 323 (502)
T PLN02377 254 -TYAVVVSTENITQNWYFGNK-KSM--LIPNCLFRVGGSAVLLSNKSRDKRRSKYKLVHVVRTHRGADDKAFRC 323 (502)
T ss_pred -CEEEEEEEeccccccCCCCC-ccc--cccceeeccccEEEEEecccccccccccccceEEEEEEEEcCCccce
Confidence 99999999999998877662 221 12357899999999998621 2466666677765543
No 34
>COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=2.4e-23 Score=176.87 Aligned_cols=171 Identities=19% Similarity=0.248 Sum_probs=142.1
Q ss_pred eEEeEEeEecCCceecHHHHHHHc----CC-ChHHH----h-hccceeeeecCCC-----------------CCHHHHHH
Q psy2407 4 VGIEAINLYGGSVFIDVIELAKYR----KL-DTVRF----E-NLLMQQKSVSLPY-----------------EDPVSFAI 56 (245)
Q Consensus 4 ~~I~~i~~~lP~~~v~~~~~~~~~----~~-~~~~~----~-~~Gi~~r~~~~~~-----------------e~~~~la~ 56 (245)
..|.++++++|++++.+.|+...+ .. ..+.| . +.+|++|+...|. |.+.+|.+
T Consensus 2 a~i~sv~t~~Ppy~~~Qse~~d~f~~~~~~~~~~~I~r~l~~~~~i~~R~~v~Pl~~y~e~~~f~ekN~ifie~a~~l~v 81 (356)
T COG3424 2 AVIASVATALPPYRYNQSEITDSFAELPFQEGREDIPRVLHANAQINRRHLVLPLDWYREPHGFGEKNEIFIEEAVPLGV 81 (356)
T ss_pred ceeeecccCCCccccchHHHHHHHHHhccccchHHHHHHHhhccccccceecccHhhccCCCChhhhhhhHHHHHHHHHH
Confidence 469999999999999997776543 11 23333 2 4578888887653 24788999
Q ss_pred HHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeec-CcchhHHHHHHHHHHHHhcCCCCC
Q psy2407 57 NAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK-QACYSCTAGLQMAINFILSKVSPG 135 (245)
Q Consensus 57 ~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~-~~C~~~~~aL~~A~~~i~sg~~~~ 135 (245)
+|.++||+.. ++.++|||+|+++|+|+ ...|++..+|.++|||++++..+.+. .||++++.+|..|+.+++++ |.
T Consensus 82 ~a~r~aL~~~-~l~pedId~vv~vtsTG-~~~Ps~dari~~~Lgl~p~~~Rvpv~glGCaaga~glara~~y~ra~--P~ 157 (356)
T COG3424 82 DALRRALDGS-PLRPEDIDAVVTVTSTG-LATPSLDARIVGELGLSPDTRRVPVWGLGCAAGAAGLARARDYCRAA--PD 157 (356)
T ss_pred HHHHHHhccC-CCCHHHCcEEEEEeecc-ccCCChhHHHHhhcCCCCccceeeeecchhhhhhhHHHHHHHHHhhC--cc
Confidence 9999999996 99999999999999998 67899999999999999999888884 79999999999999999999 66
Q ss_pred CeEEEEEeccccccccCcccccccccccccccccceeEEEEecCC
Q psy2407 136 AKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180 (245)
Q Consensus 136 ~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~ 180 (245)
.+|||||.|.+|-.+...++ .....++..+||||++|++++.+
T Consensus 158 ~~vlvV~vELCSLt~~~~d~--t~s~lVgtaLF~DG~AA~vv~gd 200 (356)
T COG3424 158 ANVLVVCVELCSLTYVFADD--TKSNLVGTALFGDGAAAVVVSGD 200 (356)
T ss_pred ceEEEEEeeeeeeeeecCCC--CcccceeeeeecCCeeEEEEecc
Confidence 99999999999988766552 22223467899999999999864
No 35
>PLN02854 3-ketoacyl-CoA synthase
Probab=99.90 E-value=1.1e-22 Score=187.89 Aligned_cols=188 Identities=15% Similarity=0.140 Sum_probs=143.7
Q ss_pred eeEEeEEeEecCCc--eecHHHHHHHc---C-CChHHH-------hhccceeeeecCCC--------------CCHHHHH
Q psy2407 3 KVGIEAINLYGGSV--FIDVIELAKYR---K-LDTVRF-------ENLLMQQKSVSLPY--------------EDPVSFA 55 (245)
Q Consensus 3 ~~~I~~i~~~lP~~--~v~~~~~~~~~---~-~~~~~~-------~~~Gi~~r~~~~~~--------------e~~~~la 55 (245)
.++++..++|-|+. +++.+.+.+.. | .+++.+ +++|+.+..+..+. +.+....
T Consensus 113 ~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sg~g~~ty~P~~~~~~~~~~~~~~~r~ea~~v~ 192 (521)
T PLN02854 113 PVYLVDFACYKPEDERKISVDSFLTMTEENGSFEDETVQFQRRISTRSGLGDETYLPRGITSRPPNLCMEEARAEAEAVM 192 (521)
T ss_pred cEEEEeeeeecCCccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCccccCccccCCCCcchHHHHHHHHHHHH
Confidence 58999999999985 67777777543 2 344432 26787765443321 1245667
Q ss_pred HHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeec-CcchhHHHHHHHHHHHHhcCCCC
Q psy2407 56 INAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK-QACYSCTAGLQMAINFILSKVSP 134 (245)
Q Consensus 56 ~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~-~~C~~~~~aL~~A~~~i~sg~~~ 134 (245)
..|+++||+++ |++|+|||+||++ +++++..|+++.+|+++||+++++.+||++ .||+||+.+|.+|+++++++..
T Consensus 193 ~~~~~~lL~ka-Gi~p~dID~LIv~-cS~~~p~PSlAa~I~n~LGlr~~i~afdLsgmGCSggl~aL~lA~~lL~~~~~- 269 (521)
T PLN02854 193 FGALDSLFSKT-GVKPRDIGILIVN-CSLFNPTPSLSAMIVNHYKLRTDIKSYNLGGMGCSAGLISIDLANDLLKANPN- 269 (521)
T ss_pred HHHHHHHHHHc-CCCHHHCCEEEEE-CCCCCCCCCHHHHHHHHhCCCCCceEEecccchhhhHHHHHHHHHHHHHhCCC-
Confidence 77889999997 9999999999985 778888999999999999997789999998 8999999999999999999954
Q ss_pred CCeEEEEEeccccccccC-cccccccccccccccccceeEEEEecCCC---C--------eeEEeecccccccccc
Q psy2407 135 GAKALVIATDISRFFVTE-DKNELTMEWAFFEPSGGAGAVAMLISDKP---E--------IFQFDIGSNGYYSFEV 198 (245)
Q Consensus 135 ~~~aLVv~~e~~s~~~~~-~~~~~~~~~~~~~~~~GDGAaA~ll~~~~---~--------i~~~~~~~~g~~~~~~ 198 (245)
++||||++|.+| .++ .+++|.+- ....+|||||+|+||++.+ + ++..++++|++..+.+
T Consensus 270 -~~aLVVstE~~S--~~~y~g~Drs~l--v~~~LFgDGAAAvlLs~~~~~~~~~k~~L~~~v~t~~~ad~~~~~~i 340 (521)
T PLN02854 270 -SYAVVVSTENIT--LNWYFGNDRSML--LCNCIFRMGGAAVLLSNKARDRKRSKYQLVHTVRTHKGADDKNYNCV 340 (521)
T ss_pred -CeEEEEEEeeee--cCCCCCCchhhh--cceeeeccceeEEEEecccccccccchheeeEEEEEEeeCCCccCeE
Confidence 999999999998 444 11113321 2357899999999998732 2 5667777777765543
No 36
>PLN02192 3-ketoacyl-CoA synthase
Probab=99.90 E-value=9.9e-23 Score=187.81 Aligned_cols=169 Identities=14% Similarity=0.112 Sum_probs=134.3
Q ss_pred eeEEeEEeEecCCc--eecHHHHHHHc---C-CChHHH-------hhccceeeeecCC-------C-------CCHHHHH
Q psy2407 3 KVGIEAINLYGGSV--FIDVIELAKYR---K-LDTVRF-------ENLLMQQKSVSLP-------Y-------EDPVSFA 55 (245)
Q Consensus 3 ~~~I~~i~~~lP~~--~v~~~~~~~~~---~-~~~~~~-------~~~Gi~~r~~~~~-------~-------e~~~~la 55 (245)
.++++..++|.|+. +++.+.+.+.. | .+++.+ +++|+.+..+..+ + +....+.
T Consensus 101 ~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sglg~~t~~p~~~~~~~~~~~~~~~~~Ea~~~~ 180 (511)
T PLN02192 101 PVYLVDFSCYKPDDSRKCTRKIFMDRSKLTGSFTEENLEFQRKILERSGLGESTYLPEAVLNVPPNPCMAEARKEAETVM 180 (511)
T ss_pred cEEEEeeeeecCCccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcccCChhhccCCCCccHHHHHHHHHHHH
Confidence 58999999999996 67788777653 2 344432 2678776544332 1 2367899
Q ss_pred HHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeec-CcchhHHHHHHHHHHHHhcCCCC
Q psy2407 56 INAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK-QACYSCTAGLQMAINFILSKVSP 134 (245)
Q Consensus 56 ~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~-~~C~~~~~aL~~A~~~i~sg~~~ 134 (245)
..|+++||+++ |++|+|||.||++ +++++..|+.+..|+++||+++++.+||++ +||+||+.||.+|.++++++..
T Consensus 181 ~~Aa~~aL~ka-Gi~p~DIDiLIv~-~S~~~~~PSlaa~I~n~lGlr~~i~afdLsgmGCSggl~aLdlA~~lL~a~~~- 257 (511)
T PLN02192 181 FGAIDQLLAKT-SVKPKDIGILIVN-CSLFNPTPSLSAMVINHYKLRGNILSYNLGGMGCSAGLISIDLAKHLLQVHPN- 257 (511)
T ss_pred HHHHHHHHHHc-CCCHHHCCEEEEE-CCCCCCCchHHHHHHHHhCCCCCceEEEcccchhhhHHHHHHHHHHHHHcCCC-
Confidence 99999999997 9999999999987 557788999999999999997689999998 7999999999999999999954
Q ss_pred CCeEEEEEeccccccccC-cccccccccccccccccceeEEEEecC
Q psy2407 135 GAKALVIATDISRFFVTE-DKNELTMEWAFFEPSGGAGAVAMLISD 179 (245)
Q Consensus 135 ~~~aLVv~~e~~s~~~~~-~~~~~~~~~~~~~~~~GDGAaA~ll~~ 179 (245)
++||||++|.+|..+.. ++ |.+. ....+|||||+|+||++
T Consensus 258 -~~aLVVstE~~S~n~y~g~d--rs~l--v~n~LFgDGAaAvLLs~ 298 (511)
T PLN02192 258 -SYALVISMENITLNWYFGND--RSML--VSNCLFRMGGAAILLSN 298 (511)
T ss_pred -CeEEEEEEEeccccCCCCCC--HHHH--hccccccccceEEEEec
Confidence 99999999999933321 23 4332 13578999999999987
No 37
>PLN00415 3-ketoacyl-CoA synthase
Probab=99.90 E-value=6.1e-23 Score=186.66 Aligned_cols=170 Identities=14% Similarity=0.168 Sum_probs=130.8
Q ss_pred eeEEeEEeEecCCc--eecHHHHHHHc---C-CChHH------Hh-hccce-----------eeeecC--CCCCHHHHHH
Q psy2407 3 KVGIEAINLYGGSV--FIDVIELAKYR---K-LDTVR------FE-NLLMQ-----------QKSVSL--PYEDPVSFAI 56 (245)
Q Consensus 3 ~~~I~~i~~~lP~~--~v~~~~~~~~~---~-~~~~~------~~-~~Gi~-----------~r~~~~--~~e~~~~la~ 56 (245)
.++++..++|-|+. +++.+.+.+.. | .+++. +. ++|+. .+.... +.....+|+.
T Consensus 59 ~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~F~~~i~~rSGlg~et~~p~~~~~~~~~~~~~~~~~e~em~i 138 (466)
T PLN00415 59 PVYLVDFSCHQPTDSCKISSETFFNMAKGAQLYTEETIQFMTRILNRSGLGDDTYSPRCMLTSPPTPSMYEARHESELVI 138 (466)
T ss_pred cEEEEeeeeecCCccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCeeeCCccccCCCCCChhhhHHHHHHHH
Confidence 58999999999885 67777766543 2 23322 11 34443 333221 2345677777
Q ss_pred H-HHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecC-cchhHHHHHHHHHHHHhcCCCC
Q psy2407 57 N-AAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQ-ACYSCTAGLQMAINFILSKVSP 134 (245)
Q Consensus 57 ~-Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~-~C~~~~~aL~~A~~~i~sg~~~ 134 (245)
. |+++||+++ |++|+|||+||+ ++++.+..|+.+..++++||+++++.+||++. ||+|++.||.+|.++++++ +
T Consensus 139 ~~A~~~aL~~a-Gi~p~dID~LIv-s~T~~~~~Pslaa~l~~~LGLr~~v~~~dL~gmGCsggv~aL~lA~~ll~a~--~ 214 (466)
T PLN00415 139 FGALNSLFKKT-GIEPREVGIFIV-NCSLFNPNPSLSSMIVNRYKLKTDVKTYNLSGMGCSAGAISVDLATNLLKAN--P 214 (466)
T ss_pred HHHHHHHHHHc-CCCHHHCCEEEE-ECcCCCCCchHHHHHHHHhCCCCCceEEEeccccchHHHHHHHHHHHHHHhC--C
Confidence 7 677888997 999999999985 56787789999999999999987999999985 9999999999999999999 5
Q ss_pred CCeEEEEEeccccccc-cCcccccccccccccccccceeEEEEecCC
Q psy2407 135 GAKALVIATDISRFFV-TEDKNELTMEWAFFEPSGGAGAVAMLISDK 180 (245)
Q Consensus 135 ~~~aLVv~~e~~s~~~-~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~ 180 (245)
.++||||++|.+|..+ +..+ +.+ ..+..+|||||+|+||+++
T Consensus 215 ~~~aLVVs~E~~S~~~~~~~d--r~~--lv~n~LFgDGAAAvlLs~~ 257 (466)
T PLN00415 215 NTYAVIVSTENMTLSMYRGND--RSM--LVPNCLFRVGGAAVMLSNR 257 (466)
T ss_pred CCEEEEEEEecccccccCCCc--HhH--hccceeecccceEEEEecC
Confidence 5999999999998765 4444 322 1246789999999999874
No 38
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=99.86 E-value=5.4e-21 Score=163.83 Aligned_cols=172 Identities=17% Similarity=0.217 Sum_probs=140.2
Q ss_pred eeEEeEEeEecCCc--eecHHHHHHHcC----CChHH------Hh-hccceeeeecCCC--------------CCHHHHH
Q psy2407 3 KVGIEAINLYGGSV--FIDVIELAKYRK----LDTVR------FE-NLLMQQKSVSLPY--------------EDPVSFA 55 (245)
Q Consensus 3 ~~~I~~i~~~lP~~--~v~~~~~~~~~~----~~~~~------~~-~~Gi~~r~~~~~~--------------e~~~~la 55 (245)
.++++..++|-|+. +++.+.+.+... .+++. +. ++|+.++.+..+. +.+..++
T Consensus 8 ~VYLvDfac~kP~~~~~v~~~~~~e~~~~~~~f~~~sl~F~~kIlerSGlG~eTy~P~~~~~~p~~~s~~~a~~Eae~v~ 87 (290)
T PF08392_consen 8 PVYLVDFACYKPPDELRVSREEFIEHARRCGRFDEESLDFQRKILERSGLGDETYLPPALHEIPPDPSLAAAREEAEMVI 87 (290)
T ss_pred CEEEEeeeecCCCcccccCHHHHHHHHHhcccCChhHHHHHHHHHHhcCCCccccCCcccccCCCcccHHHHHHHHHHHH
Confidence 58999999999985 578888877542 23332 22 6798888775431 1245688
Q ss_pred HHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee-cCcchhHHHHHHHHHHHHhcCCCC
Q psy2407 56 INAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL-KQACYSCTAGLQMAINFILSKVSP 134 (245)
Q Consensus 56 ~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv-~~~C~~~~~aL~~A~~~i~sg~~~ 134 (245)
..|++++|+++ |++|+|||.||+.+++. .+.|+++++|++++|+++++..+++ ++||++++.++++|+++++.. |
T Consensus 88 f~av~~LL~kt-gv~p~dIdiLVvncs~f-~ptPSLsamIvnr~~mr~di~~~nLsGMGCsAgliai~lA~~lL~~~--p 163 (290)
T PF08392_consen 88 FGAVDDLLAKT-GVKPSDIDILVVNCSLF-NPTPSLSAMIVNRYGMRSDIKSYNLSGMGCSAGLIAIDLAKDLLQAH--P 163 (290)
T ss_pred HHHHHHHHHHc-CCCHHHCCEEEEECcCC-CcCCcHHHHHHHHhCCCcCeeeecccCCcchhhHHHHHHHHHHHHhC--C
Confidence 89999999996 99999999999887774 7889999999999999989999999 579999999999999999999 6
Q ss_pred CCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCCC
Q psy2407 135 GAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP 181 (245)
Q Consensus 135 ~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~ 181 (245)
+.+||||+.|..+..+.. +++|.+- ....+|+|||+|+||+..+
T Consensus 164 ~~~ALVVstE~~s~~~Y~-G~~rsml--v~NcLFr~GgAAvLLSn~~ 207 (290)
T PF08392_consen 164 NSYALVVSTENISANWYR-GNDRSML--VSNCLFRMGGAAVLLSNKP 207 (290)
T ss_pred CcEEEEEEEeeccccccc-CCcHHHh--hccccccCCceeEEeecCc
Confidence 699999999999987743 4334432 2478999999999999754
No 39
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=99.82 E-value=2.4e-19 Score=152.82 Aligned_cols=107 Identities=18% Similarity=0.226 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHh
Q psy2407 50 DPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFIL 129 (245)
Q Consensus 50 ~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~ 129 (245)
+..+|+.+|+++||+++ |++++|||.|+++++++++..|+.+.+++..||++ +.++++++++|+|++.||.+|..+|+
T Consensus 6 ~~~~l~~~A~~~al~~a-g~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~~-~~~~~~i~~~C~s~~~al~~A~~~i~ 83 (254)
T cd00327 6 TASELGFEAAEQAIADA-GLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGIS-GGPAYSVNQACATGLTALALAVQQVQ 83 (254)
T ss_pred HHHHHHHHHHHHHHHHc-CCCCCCceEEEEEECCCCccccHHHHHHHHHhCCC-CCCcceeccHhHHHHHHHHHHHHHHH
Confidence 47899999999999996 99999999999999999877899999999999995 78999999999999999999999999
Q ss_pred cCCCCCCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCC
Q psy2407 130 SKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180 (245)
Q Consensus 130 sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~ 180 (245)
+|.+ +++||+++|. .+|||||+|+||++.
T Consensus 84 ~g~~--~~~lv~~~e~--------------------~~~gdGAaa~vL~~~ 112 (254)
T cd00327 84 NGKA--DIVLAGGSEE--------------------FVFGDGAAAAVVESE 112 (254)
T ss_pred CCCC--CEEEEEecce--------------------eeecceEEEEEECcH
Confidence 9976 9999999998 149999999999874
No 40
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=99.78 E-value=5e-18 Score=147.51 Aligned_cols=118 Identities=12% Similarity=0.171 Sum_probs=96.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHH
Q psy2407 48 YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINF 127 (245)
Q Consensus 48 ~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~ 127 (245)
+++..+|+.+|+++||+++ |++++|||++++++. +++ +..+..+++.||+ +.|+++++|++++.||.+|..+
T Consensus 47 EkAe~eLa~eAa~~ALekA-GL~~~DID~IIvGdl-~~Q--~~~As~vA~~LGI----P~fdV~~ACSTf~~AL~lAa~l 118 (327)
T TIGR02845 47 EKAERKLMEDAVNLALKKA-NLKKDDVDFFLAGDL-LNQ--IITANFVARDLGI----PFLGLYGACSTSMETLALGAML 118 (327)
T ss_pred chhHHHHHHHHHHHHHHHc-CCCHHHCCEEEEeCC-CCc--ccHHHHHHHHhCC----CEEEEeccCHHHHHHHHHHHHH
Confidence 4677899999999999997 999999999998873 433 3468899999997 4599999999999999999999
Q ss_pred HhcCCCCCCeEEEEEeccccc------cc-cCcccccccccccccccccceeEEEEecCC
Q psy2407 128 ILSKVSPGAKALVIATDISRF------FV-TEDKNELTMEWAFFEPSGGAGAVAMLISDK 180 (245)
Q Consensus 128 i~sg~~~~~~aLVv~~e~~s~------~~-~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~ 180 (245)
|++|.+ ++|||+++|..+. .. +|...++.+ ..+|||||+|+||++.
T Consensus 119 I~SG~a--d~VLVV~Ssh~S~AErqfr~p~eyg~q~~~t-----a~~tgdGAGA~vl~~~ 171 (327)
T TIGR02845 119 VDGGFA--DRVLAATSSHYATAERQFRYPTEYGVQKPPT-----AQWTVTGAGAVLLAST 171 (327)
T ss_pred HhCCCC--CEEEEEEecccchhhhhcccccccccCCCCe-----eeEEEcccEEEEEeec
Confidence 999977 9999999888873 22 341111222 3569999999999874
No 41
>PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated
Probab=99.75 E-value=3.3e-17 Score=146.58 Aligned_cols=176 Identities=15% Similarity=0.093 Sum_probs=129.3
Q ss_pred CceeEEeEEeEecCCce------------ecHHHHHHHcCCC-hHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhc
Q psy2407 1 MIKVGIEAINLYGGSVF------------IDVIELAKYRKLD-TVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNL 66 (245)
Q Consensus 1 m~~~~I~~i~~~lP~~~------------v~~~~~~~~~~~~-~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a 66 (245)
|.++.|.++|..-|--. ++|.+...+.+.. .+|+. ++|+.+|++ ...+...+|+.+|+++||+++
T Consensus 2 ~~~v~I~~~g~vs~lG~~~~~~~aa~ragi~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~r~~~La~~Al~~aL~~a 80 (348)
T PRK06147 2 MRALAIVGSGMVTAVGLDAPSSCAAIRARLDNFQETRFIDPPGGEWLIGAPVPLPPPW-RGPERLAEMAAPAIAEALEGL 80 (348)
T ss_pred CCceEEEecceeecCcCCHHHHHHHHHcccccccccccccCCCCCceEeecCcCCccc-CchHHHHHHHHHHHHHHHHhc
Confidence 45799999999888753 2232222333433 56776 788888887 446788999999999999997
Q ss_pred CC-CCcCCcCEEEEEec-----cCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEE
Q psy2407 67 SN-IDKNSIELIITCSE-----SGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALV 140 (245)
Q Consensus 67 ~g-~~~~dId~li~~t~-----~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLV 140 (245)
+ +++++|+++|+.+. .++...+..+..++++||+....++++++.+|+|++.||..|..+|++|.+ +.+||
T Consensus 81 -~~~~~~~i~lil~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~~~~i~~~casg~~Al~~A~~~i~~G~~--~~~lv 157 (348)
T PRK06147 81 -PALDASEAPLLLCVAEEERPGRPPDLEERLLRELEARLGLRLEPGSAVIARGRVSGAVALAQARRLIAAGGC--PRVLV 157 (348)
T ss_pred -ccccccCCcEEEEeCchhcCCCCcchHHHHHHHHHHHhCCCCCCCcccccccchHHHHHHHHHHHHHHcCCC--CEEEE
Confidence 8 79999999987644 233445567889999999954467899999999999999999999999977 99999
Q ss_pred EEecccccc--ccC-cccccc-cccccccccccceeEEEEecCC
Q psy2407 141 IATDISRFF--VTE-DKNELT-MEWAFFEPSGGAGAVAMLISDK 180 (245)
Q Consensus 141 v~~e~~s~~--~~~-~~~~~~-~~~~~~~~~~GDGAaA~ll~~~ 180 (245)
+++|.++.. +.. ....+. .+-.-..++|||||++++|++.
T Consensus 158 gg~d~~~~~~~~~~~~~~~~l~~~~~~~G~v~GEGA~a~vLe~~ 201 (348)
T PRK06147 158 AGVDSLLTGPTLAHYEARDRLLTSQNSNGFIPGEAAAAVLLGRP 201 (348)
T ss_pred EeeccccCHHHHHHHHHhhccCCCCCCCceeeeceEEEEEEccH
Confidence 999987652 111 000000 0000014679999999999873
No 42
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=99.74 E-value=2.4e-17 Score=145.82 Aligned_cols=125 Identities=17% Similarity=0.143 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHhcCCCC----cCCcCEEEEEeccCCCC---------------------CCcHHHHHHHHcCCCCCc
Q psy2407 51 PVSFAINAAAPLIDNLSNID----KNSIELIITCSESGIDF---------------------GKSMSTYIHHYLGLNRNC 105 (245)
Q Consensus 51 ~~~la~~Aa~~aL~~a~g~~----~~dId~li~~t~~~~~~---------------------~p~~a~~l~~~LGl~~~~ 105 (245)
..+|+++|+++||+++ |++ +++||.||++++++.+. .|+.+..|+..||+ +.
T Consensus 11 ~~~l~~~aa~~aL~~A-g~~~~~~~~~i~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl--~g 87 (332)
T cd00825 11 VSILGFEAAERAIADA-GLSREYQKNPIVGVVVGTGGGSPRFQVFGADAMRAVGPYVVTKAMFPGASGQIATPLGI--HG 87 (332)
T ss_pred HHHHHHHHHHHHHHHc-CCCccccCCCCEEEEEEeCCccHHHHhhhhccccccCcchhhcccchHHHHHHHHHhCC--CC
Confidence 7899999999999997 999 99999999998876554 67889999999999 46
Q ss_pred ceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcc--------c-cccccc--ccccccccceeEE
Q psy2407 106 RLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDK--------N-ELTMEW--AFFEPSGGAGAVA 174 (245)
Q Consensus 106 ~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~--------~-~~~~~~--~~~~~~~GDGAaA 174 (245)
++++++++|+|++.||+.|..+|++|.+ +++||+++|..+....... + .+..++ .....+|||||+|
T Consensus 88 ~~~~v~~~cas~~~al~~A~~~i~~g~~--~~~Lv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gdGaaA 165 (332)
T cd00825 88 PAYDVSAACAGSLHALSLAADAVQNGKQ--DIVLAGGSEELAAPMDCEFDAMGALSTPEKASRTFDAAADGFVFGDGAGA 165 (332)
T ss_pred CccccccHhHHHHHHHHHHHHHHHcCCC--CEEEEeccccccCHHHHHHHhhccccCCCCCCCCCCCCCCCEEEEeeEEE
Confidence 8899999999999999999999999976 9999999998865442200 0 000011 0124579999999
Q ss_pred EEecCC
Q psy2407 175 MLISDK 180 (245)
Q Consensus 175 ~ll~~~ 180 (245)
+||++.
T Consensus 166 ~vL~~~ 171 (332)
T cd00825 166 LVVEEL 171 (332)
T ss_pred EEECcH
Confidence 999863
No 43
>PRK08304 stage V sporulation protein AD; Validated
Probab=99.69 E-value=7.2e-16 Score=134.40 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=97.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHH
Q psy2407 48 YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINF 127 (245)
Q Consensus 48 ~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~ 127 (245)
+++..+|+.+|+++||+++ |++++|||++|+++.. . .+..+..+++.||+ +++++.++|+++..+|.+|..+
T Consensus 53 EkAeseLa~eAa~~ALekA-GI~~~DID~lI~Gdll-~--Q~~sAs~vA~~LGI----Pa~dV~gACST~~~AL~lAa~l 124 (337)
T PRK08304 53 EKAERKMMEDAIQQALQKA-NLKKSDIDYLLAGDLL-N--QIISANFAARELGI----PFLGLYGACSTMMESLALGSML 124 (337)
T ss_pred cccHHHHHHHHHHHHHHHc-CCCHHHCCEEEEECCC-C--CcchHHHHHHHhCC----cEEEEeccCHHHHHHHHHHHHH
Confidence 5678899999999999997 9999999999998752 2 23568899999997 6899999999999999999999
Q ss_pred HhcCCCCCCeEEEEEeccccccc---cCc---ccccccccccccccccceeEEEEecCC
Q psy2407 128 ILSKVSPGAKALVIATDISRFFV---TED---KNELTMEWAFFEPSGGAGAVAMLISDK 180 (245)
Q Consensus 128 i~sg~~~~~~aLVv~~e~~s~~~---~~~---~~~~~~~~~~~~~~~GDGAaA~ll~~~ 180 (245)
|++|.+ ++|||++++..+... ++. +..| +.. ...+++||.|+||++.
T Consensus 125 I~SG~a--d~VLVV~Ssh~s~aerqfr~P~eyg~qr--p~t--aqwtvtGAGA~i~~~~ 177 (337)
T PRK08304 125 IDGGFA--DRVLAATSSHFATAERQFRFPTEYGGQR--PPT--AQWTVTGAGAVLLSRE 177 (337)
T ss_pred HhcCCC--CEEEEEEcchhhhhhhhccCchhccccC--CCc--ceEEeeccEEEEEecC
Confidence 999977 999999999997762 110 0001 111 2458999999999875
No 44
>PF08545 ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; InterPro: IPR013751 Fatty acid synthesis (FAS) is a vital aspect of cellular physiology which can occur by two distinct pathways. The FAS I pathway, which generally only produces palmitate, is found in eukaryotes and is performed either by a single polypeptide which contains all the reaction centres needed to form a fatty acid, or by two polypeptides which interact to form a multifunctional complex. The FAS II pathway, which is capable of producing many different fatty acids, is found in mitochondria, bacteria, plants and parasites, and is performed by many distinct proteins, each of which catalyses a single step within the pathway. The large diversity of products generated by this pathway is possible because the acyl carrier protein (ACP) intermediates are diffusible entities that can be diverted into other biosynthetic pathways []. 3-Oxoacyl-[acyl carrier protein (ACP)] synthase III catalyses the first condensation step within the FAS II pathway, using acetyl-CoA as the primer and malonyl-ACP as the acceptor, as shown below. Acyl-[ACP] + malonyl-[ACP] = 3-oxoacyl-[ACP] + CO(2) + [ACP] The oxoacyl-ACP formed by this reaction subsequently enters the elongation cycle, where the acyl chain is progressively lengthened by the combined activities of several enzymes. The enzymes studied so far are homodimers, where each monomer consists of two domains (N-terminal and C-terminal) which are similar in structure, but not in sequence [, ]. This entry represents a conserved region within the N-terminal domain.; GO: 0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity, 0006633 fatty acid biosynthetic process; PDB: 1ZOW_C 1UB7_B 3IL7_A 3IL3_A 2X3E_B 4DFE_C 3LED_B 3ROW_B 3S23_A 3S1Z_A ....
Probab=99.64 E-value=4.1e-16 Score=110.47 Aligned_cols=76 Identities=26% Similarity=0.347 Sum_probs=62.3
Q ss_pred eeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCC--C--Ce
Q psy2407 108 FELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK--P--EI 183 (245)
Q Consensus 108 ~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~--~--~i 183 (245)
||++++|+|++.||++|..+|++|.+ ++||||++|+.+..+++.+ +.. ..+|||||+|+||+++ + ++
T Consensus 1 fDi~~~C~g~~~al~~A~~~i~~g~~--~~~Lvv~~d~~s~~~~~~~--~~~-----~~~~gDgAaA~vl~~~~~~~~~i 71 (80)
T PF08545_consen 1 FDINQACAGFLYALDVAAALIASGRA--KNALVVGGDRLSRIVDRTD--RQT-----AFIFGDGAAAVVLSRDEEGGFGI 71 (80)
T ss_dssp EEEE-GGGHHHHHHHHHHHHHHTTS---SEEEEEEEEEGGGGSHTTH--HHH-----HTTB-EEEEEEEEEEESSSSCEE
T ss_pred CcccccchHHHHHHHHHHHHHhhccC--CEEEEEeeccccccccccc--cCc-----ceeecchheEEEEEecCCCCCeE
Confidence 79999999999999999999999966 9999999999999887655 221 3579999999999984 2 58
Q ss_pred eEEeecccc
Q psy2407 184 FQFDIGSNG 192 (245)
Q Consensus 184 ~~~~~~~~g 192 (245)
+++.+++||
T Consensus 72 l~~~~~tdG 80 (80)
T PF08545_consen 72 LDSHLRTDG 80 (80)
T ss_dssp EEEEEEE-G
T ss_pred EEEEEEcCC
Confidence 999988886
No 45
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=99.62 E-value=2e-15 Score=136.88 Aligned_cols=100 Identities=11% Similarity=0.099 Sum_probs=90.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407 46 LPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI 125 (245)
Q Consensus 46 ~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~ 125 (245)
.++++..+|+.+|+++||+++ |++++|||.||+++.++++..|..+..++..||+++++++++++++|+|++.+|..|.
T Consensus 17 ~~~~~~~~La~~A~~~AL~dA-gl~~~dID~vi~~~~~~~~~~~~~a~~v~~~lGl~~~~~~~~v~~~c~s~~~al~~A~ 95 (386)
T cd00751 17 LKDVSADDLGAAVIKALLERA-GLDPEEVDDVIMGNVLQAGEGQNPARQAALLAGLPESVPATTVNRVCGSGLQAVALAA 95 (386)
T ss_pred CCCCCHHHHHHHHHHHHHHhc-CCCHHHCCEEEEEeccCCCCCChHHHHHHHHcCCCCCCchhhhccccHHHHHHHHHHH
Confidence 346899999999999999997 9999999999998887766678888889999999545899999999999999999999
Q ss_pred HHHhcCCCCCCeEEEEEeccccc
Q psy2407 126 NFILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 126 ~~i~sg~~~~~~aLVv~~e~~s~ 148 (245)
.+|++|.+ ++|||+++|++|.
T Consensus 96 ~~I~sG~~--~~vLv~g~e~~s~ 116 (386)
T cd00751 96 QSIAAGEA--DVVVAGGVESMSR 116 (386)
T ss_pred HHHHCCCC--CeEEEeeeecccc
Confidence 99999977 9999999998754
No 46
>PRK07108 acetyl-CoA acetyltransferase; Provisional
Probab=99.59 E-value=9.3e-15 Score=132.71 Aligned_cols=111 Identities=8% Similarity=0.066 Sum_probs=96.4
Q ss_pred hccceeeeec-CCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCC-cHHHHHHHHcCCCCCcceeeecCc
Q psy2407 36 NLLMQQKSVS-LPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGK-SMSTYIHHYLGLNRNCRLFELKQA 113 (245)
Q Consensus 36 ~~Gi~~r~~~-~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p-~~a~~l~~~LGl~~~~~~~dv~~~ 113 (245)
++++.+|+.. ..++++.+|+.+|+++||+++ |+++++||.||+++.+++...| ..+..++..+|++.++++++|+++
T Consensus 11 rTpfgk~~~~~l~~~~~~dL~~~A~~~aL~~a-gi~~~~ID~vi~G~~~~~~~~~~~~a~~i~~~lGl~~~~p~~~V~~a 89 (392)
T PRK07108 11 RTPLAKSWRGAFNMTHGATLGGHVVQHAVERA-KLDPAEVEDVIMGCANPEGATGANIARQIALRAGLPVTVPGMTVNRF 89 (392)
T ss_pred cCCccccCCCCCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCcEEEEEeecccccccHHHHHHHHHcCCCCCCceeeecch
Confidence 4566554322 357889999999999999996 9999999999999988776655 488999999999656999999999
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc
Q psy2407 114 CYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF 149 (245)
Q Consensus 114 C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~ 149 (245)
|+|++.||..|..+|++|.+ +.+|+++.|++|..
T Consensus 90 CaSg~~Al~~A~~~I~sG~~--d~vlagGvE~ms~~ 123 (392)
T PRK07108 90 CSSGLQTIALAAQRVIAGEG--DVFVAGGVESISCV 123 (392)
T ss_pred hhHHHHHHHHHHHHHHCCCC--CEEEEEEEeccCCC
Confidence 99999999999999999977 99999999999853
No 47
>PRK05656 acetyl-CoA acetyltransferase; Provisional
Probab=99.57 E-value=1.6e-14 Score=131.29 Aligned_cols=99 Identities=13% Similarity=0.135 Sum_probs=89.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN 126 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~ 126 (245)
.+++..+|+.+|+++||+++ |++++|||.||+++.++....+..+..++..||++..+++++|+++|+|++.++..|.+
T Consensus 22 ~~~~~~~La~~A~~~AL~~a-gl~~~dID~vi~g~~~~~~~~~~~a~~va~~lGl~~~~p~~~V~~~Casg~~ai~~A~~ 100 (393)
T PRK05656 22 ANIPAVELGAAVIRRLLEQT-GLDPAQVDEVILGQVLTAGAGQNPARQAAIKAGLPHSVPAMTLNKVCGSGLKALHLAAQ 100 (393)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEEecCCCCCCcHHHHHHHHcCCCCCcceEEecccchhHHHHHHHHHH
Confidence 57889999999999999997 99999999999998876544667788999999995448999999999999999999999
Q ss_pred HHhcCCCCCCeEEEEEeccccc
Q psy2407 127 FILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 127 ~i~sg~~~~~~aLVv~~e~~s~ 148 (245)
+|++|.+ +++||+++|++|.
T Consensus 101 ~I~sG~~--d~vLv~G~E~ms~ 120 (393)
T PRK05656 101 AIRCGDA--EVIIAGGQENMSL 120 (393)
T ss_pred HHHcCCC--CEEEEEEEhhhcc
Confidence 9999977 9999999998875
No 48
>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases. This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt
Probab=99.57 E-value=1.8e-14 Score=130.73 Aligned_cols=98 Identities=10% Similarity=0.097 Sum_probs=89.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHH
Q psy2407 48 YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINF 127 (245)
Q Consensus 48 ~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~ 127 (245)
+++..+|+.+|+++||+++ |++++|||.+++++.+++...|..+..++..+|++.++++++++++|++++.+|..|..+
T Consensus 18 ~~t~~~La~~A~~~Al~dA-gl~~~dID~vv~g~~~~~~~~~~~a~~va~~lGl~~~~~~~~v~~~Casg~~al~~A~~~ 96 (386)
T TIGR01930 18 DVSAEDLGAAVIKELLERN-PLDPELIDDVIFGNVLQAGEQQNIARQAALLAGLPESVPAYTVNRQCASGLQAVILAAQL 96 (386)
T ss_pred CCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeccCCCCCChHHHHHHHHcCCCCCceeeeecchhhHHHHHHHHHHHH
Confidence 6889999999999999997 999999999999888776656777889999999964589999999999999999999999
Q ss_pred HhcCCCCCCeEEEEEeccccc
Q psy2407 128 ILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 128 i~sg~~~~~~aLVv~~e~~s~ 148 (245)
|++|.+ +++||+++|+++.
T Consensus 97 I~sG~~--~~vLv~g~e~~s~ 115 (386)
T TIGR01930 97 IRAGEA--DVVVAGGVESMSR 115 (386)
T ss_pred HHCCCC--CEEEEEEehhhcc
Confidence 999987 9999999998754
No 49
>PRK06205 acetyl-CoA acetyltransferase; Provisional
Probab=99.56 E-value=2e-14 Score=131.07 Aligned_cols=100 Identities=12% Similarity=0.049 Sum_probs=92.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN 126 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~ 126 (245)
.+++..+|+.+|+++||+++ |++++|||.|+++++++....|+.+..++..+|++.++++++|+.+|+|++.++..|.+
T Consensus 22 ~~~~~~eLa~~A~~~AL~~a-gl~~~dID~vv~g~~~~~~~~~~~a~~va~~~Gl~~~~p~~~V~~~CaSg~~Al~~A~~ 100 (404)
T PRK06205 22 KDVPAEELAATVIRALVERT-GIDPARIDDVIFGQGYPNGEAPAIGRVAALDAGLPVTVPGMQLDRRCGSGLQAVITAAM 100 (404)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeccCCCCCChHHHHHHHHcCCCCCCceeehhhhhhHHHHHHHHHHH
Confidence 47889999999999999997 99999999999999888777788888999999996578999999999999999999999
Q ss_pred HHhcCCCCCCeEEEEEecccccc
Q psy2407 127 FILSKVSPGAKALVIATDISRFF 149 (245)
Q Consensus 127 ~i~sg~~~~~~aLVv~~e~~s~~ 149 (245)
+|++|.+ +.+||+++|++|..
T Consensus 101 ~I~sG~~--d~vLv~G~E~ms~~ 121 (404)
T PRK06205 101 QVQTGAA--DVVIAGGAESMSNV 121 (404)
T ss_pred HHHcCCC--CEEEEeeehhhccC
Confidence 9999977 99999999998754
No 50
>PRK08235 acetyl-CoA acetyltransferase; Provisional
Probab=99.56 E-value=2.5e-14 Score=130.01 Aligned_cols=100 Identities=11% Similarity=0.043 Sum_probs=89.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN 126 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~ 126 (245)
.+++..+|+.+|+++||+++ |++++|||.||+++.++....+.++..++..+|++.++++++|+++|+||+.++..|..
T Consensus 22 ~~~~~~eLa~~A~~~aL~~a-gl~~~dID~vi~g~~~~~~~~~~~~~~~~~~~Gl~~~~p~~~V~~~CaSg~~Al~~A~~ 100 (393)
T PRK08235 22 KDVKATELGGIAIKEALERA-NVSAEDVEEVIMGTVLQGGQGQIPSRQAARAAGIPWEVQTETVNKVCASGLRAVTLADQ 100 (393)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEecccCCCCCCHHHHHHHHcCCCCCcceeehhhhhhHHHHHHHHHHH
Confidence 57899999999999999997 99999999999998876323445677789999996579999999999999999999999
Q ss_pred HHhcCCCCCCeEEEEEecccccc
Q psy2407 127 FILSKVSPGAKALVIATDISRFF 149 (245)
Q Consensus 127 ~i~sg~~~~~~aLVv~~e~~s~~ 149 (245)
+|++|.+ +.+||+++|++|..
T Consensus 101 ~I~sG~~--d~vLvvG~E~ms~~ 121 (393)
T PRK08235 101 IIRAGDA--SVIVAGGMESMSNA 121 (393)
T ss_pred HHHCCCC--CEEEEEeeeccccC
Confidence 9999977 99999999998753
No 51
>PRK09051 beta-ketothiolase; Provisional
Probab=99.54 E-value=4e-14 Score=128.66 Aligned_cols=99 Identities=11% Similarity=0.079 Sum_probs=88.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCC-CcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFG-KSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI 125 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~-p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~ 125 (245)
.+++..+|+.+|+++||+++ |++++|||.||++++++.+.. +..+..++..+|+++++++++|+++|+||+.++..|.
T Consensus 23 ~~~~~~eL~~~A~~~AL~~a-gi~~~dID~vi~g~~~~~~~~~~~~a~~~~~~~Gl~~~~p~~~V~~aCaSg~~Al~~A~ 101 (394)
T PRK09051 23 KDVAPTDLGATVVREALARA-GVDPDQVGHVVFGHVIPTEPRDMYLSRVAAINAGVPQETPAFNVNRLCGSGLQAIVSAA 101 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHcCEEEEeeeccccCCCccHHHHHHHHcCCCCCCceEEecccchHHHHHHHHHH
Confidence 57889999999999999997 999999999999998875543 4567777788899656899999999999999999999
Q ss_pred HHHhcCCCCCCeEEEEEeccccc
Q psy2407 126 NFILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 126 ~~i~sg~~~~~~aLVv~~e~~s~ 148 (245)
.+|++|.+ +++||+++|++|.
T Consensus 102 ~~I~sG~~--d~vLvvG~E~mS~ 122 (394)
T PRK09051 102 QAILLGDA--DVAIGGGAESMSR 122 (394)
T ss_pred HHHHcCCC--CEEEEEeehhccc
Confidence 99999977 9999999999875
No 52
>PRK08242 acetyl-CoA acetyltransferase; Validated
Probab=99.52 E-value=8.7e-14 Score=126.50 Aligned_cols=101 Identities=14% Similarity=0.134 Sum_probs=90.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407 46 LPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA 124 (245)
Q Consensus 46 ~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A 124 (245)
..+.++.+|+.+|++++|+++ |+++++||.||+++.++... .+..+..++..+|++.++++++|+++|+||+.||.+|
T Consensus 23 l~~~~~~dLa~~A~~~al~~a-gi~p~~ID~vi~G~~~~~~~~~~~~~r~a~~~~Gl~~~~pa~~Vn~aCaSg~~Ai~~A 101 (402)
T PRK08242 23 LHEVKPVRLAAGLLEALRDRN-GLDTAAVDDVVLGCVTPVGDQGADIARTAVLAAGLPETVPGVQINRFCASGLEAVNLA 101 (402)
T ss_pred CCCCCHHHHHHHHHHHHHHHc-CCCHHHcCEEEEEecCCCccccccHHHHHHHHcCCCCCCCeEEEcchhhhHHHHHHHH
Confidence 457889999999999999996 99999999999999987544 3456777778899976799999999999999999999
Q ss_pred HHHHhcCCCCCCeEEEEEecccccc
Q psy2407 125 INFILSKVSPGAKALVIATDISRFF 149 (245)
Q Consensus 125 ~~~i~sg~~~~~~aLVv~~e~~s~~ 149 (245)
.++|++|.+ +.+|++++|++|..
T Consensus 102 ~~~I~sG~~--d~vLv~G~E~mS~~ 124 (402)
T PRK08242 102 AAKVRSGWD--DLVIAGGVESMSRV 124 (402)
T ss_pred HHHHHcCCC--CEEEEEEEEccCCC
Confidence 999999977 99999999999863
No 53
>PRK12578 acetyl-CoA acetyltransferase; Provisional
Probab=99.50 E-value=1.5e-13 Score=124.61 Aligned_cols=98 Identities=14% Similarity=0.154 Sum_probs=86.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN 126 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~ 126 (245)
++++..+|+.+|+++||+++ |++++|||.+|+++.++....+..+..++..||++ +.++++++++|+|++.+|..|..
T Consensus 17 ~~~~~~eLa~~A~~~AL~dA-gi~~~dID~vi~g~~~~~~~~~~~a~~v~~~lGl~-~~~~~~v~~~casg~~al~~A~~ 94 (385)
T PRK12578 17 DDVSVQELAWESIKEALNDA-GVSQTDIELVVVGSTAYRGIELYPAPIVAEYSGLT-GKVPLRVEAMCATGLAASLTAYT 94 (385)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEecccccccCChHHHHHHHhCCC-CCCeeEEeccCHHHHHHHHHHHH
Confidence 57889999999999999997 99999999999988776433344578899999995 56779999999999999999999
Q ss_pred HHhcCCCCCCeEEEEEeccccc
Q psy2407 127 FILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 127 ~i~sg~~~~~~aLVv~~e~~s~ 148 (245)
+|++|.+ +++||+++|+++.
T Consensus 95 ~I~sG~~--~~vLvvg~e~~s~ 114 (385)
T PRK12578 95 AVASGLV--DMAIAVGVDKMTE 114 (385)
T ss_pred HHHCCCC--CEEEEEEEeeccc
Confidence 9999977 9999999998764
No 54
>PF00108 Thiolase_N: Thiolase, N-terminal domain; InterPro: IPR020616 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 1PXT_B 1AFW_B 1WL4_A 1WL5_A 4E1L_B 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2WUA_B ....
Probab=99.50 E-value=1.2e-13 Score=119.20 Aligned_cols=101 Identities=18% Similarity=0.175 Sum_probs=89.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407 46 LPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI 125 (245)
Q Consensus 46 ~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~ 125 (245)
..+.++.+|+.+|++.+|+++ ++++++||.|++++..+....+.++..++-.+|++..++++.|++.|+|++.|+..|.
T Consensus 21 l~~~~~~~L~~~a~~~al~~~-~i~~~~Id~v~~G~~~~~~~g~~~ar~~~l~aGl~~~vp~~~V~~~CaSG~~Av~~a~ 99 (264)
T PF00108_consen 21 LADVSPEDLAAEAVKAALERA-GIDPEDIDAVIVGNVLQEGEGQNIARQAALAAGLPESVPATTVNRACASGLQAVHLAA 99 (264)
T ss_dssp TTTS-HHHHHHHHHHHHHHHH-TSHGGGEEEEEEE-SSSCTTTCHHHHHHHHHTTS-TTSEEEEEE-GGGHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhc-ccchhhhhhcCcccccccccchhhhhhhhhhcccccccceeeehhhhhHHHHHHHHhh
Confidence 457899999999999999997 9999999999999988866677889999999999778999999999999999999999
Q ss_pred HHHhcCCCCCCeEEEEEecccccc
Q psy2407 126 NFILSKVSPGAKALVIATDISRFF 149 (245)
Q Consensus 126 ~~i~sg~~~~~~aLVv~~e~~s~~ 149 (245)
..|++|.+ +.+|++++|++|..
T Consensus 100 ~~I~sG~~--dvvlagGvE~mS~~ 121 (264)
T PF00108_consen 100 MAIASGEA--DVVLAGGVESMSRV 121 (264)
T ss_dssp HHHHTTS---SEEEEEEEEETTTS
T ss_pred hhhcCCCc--cEEEEecccccccc
Confidence 99999977 99999999999976
No 55
>PRK09052 acetyl-CoA acetyltransferase; Provisional
Probab=99.48 E-value=2.3e-13 Score=123.84 Aligned_cols=99 Identities=12% Similarity=0.044 Sum_probs=85.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcC-CCCcCCcCEEEEEeccCCCCCCcH-HHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLS-NIDKNSIELIITCSESGIDFGKSM-STYIHHYLGLNRNCRLFELKQACYSCTAGLQMA 124 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~-g~~~~dId~li~~t~~~~~~~p~~-a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A 124 (245)
.+++..+|+.+|+++||++ + |++++|||.||+++++++...+.. +..+...+|++..+++++|+++|+||+.|+..|
T Consensus 27 ~~~s~~eLa~~A~~~AL~~-a~gl~~~dID~vi~g~~~~~~~~~~~~ar~~~~~~Gl~~~~p~~~V~~aCaSg~~Al~~A 105 (399)
T PRK09052 27 KNTRPDDLLAHVLRSAVAQ-VPGLDPKLIEDAIVGCAMPEAEQGLNVARIGALLAGLPNSVGGVTVNRFCASGLQAVAMA 105 (399)
T ss_pred CCCCHHHHHHHHHHHHHHh-ccCcCHHHCCEEEEEecCCCCCCCchHHHHHHHHcCCCCCCceeeecchhhHHHHHHHHH
Confidence 3688999999999999999 4 999999999999988876554444 444566679954589999999999999999999
Q ss_pred HHHHhcCCCCCCeEEEEEeccccc
Q psy2407 125 INFILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 125 ~~~i~sg~~~~~~aLVv~~e~~s~ 148 (245)
..+|++|.+ +++||+++|++|.
T Consensus 106 ~~~I~sG~~--d~vLv~G~E~mS~ 127 (399)
T PRK09052 106 ADRIRVGEA--DVMIAAGVESMSM 127 (399)
T ss_pred HHHHHCCCC--CEEEEEEEecccc
Confidence 999999977 9999999998875
No 56
>PRK08170 acetyl-CoA acetyltransferase; Provisional
Probab=99.47 E-value=2.7e-13 Score=124.45 Aligned_cols=98 Identities=12% Similarity=0.118 Sum_probs=88.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHH
Q psy2407 48 YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINF 127 (245)
Q Consensus 48 ~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~ 127 (245)
+.+..+|+.+|+++||+++ |++++|||.||+++.++....++.+..++..||++.++++++++++|+|++.++..|..+
T Consensus 24 ~~~~~~L~~~A~~~Al~dA-gl~~~dID~vi~g~~~~~~~~~~~a~~v~~~lGl~~~~p~~~v~~~CaSg~~al~~A~~~ 102 (426)
T PRK08170 24 PFSASDLAVAAGRALLNRQ-PFAPDDLDEVILGCAMPSPDEANIARVVALRLGCGEKVPAWTVQRNCASGMQALDSAAAN 102 (426)
T ss_pred CCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeccCCCCcChHHHHHHHHhCcCCCceeeeccchhhHHHHHHHHHHHH
Confidence 5789999999999999997 999999999999877654444677889999999954689999999999999999999999
Q ss_pred HhcCCCCCCeEEEEEeccccc
Q psy2407 128 ILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 128 i~sg~~~~~~aLVv~~e~~s~ 148 (245)
|++|.+ +++||+++|++|.
T Consensus 103 I~sG~~--d~vLv~G~E~ms~ 121 (426)
T PRK08170 103 IALGRA--DLVLAGGVEAMSH 121 (426)
T ss_pred HHCCCC--CEEEEEEEecccC
Confidence 999977 9999999998875
No 57
>PRK08313 acetyl-CoA acetyltransferase; Provisional
Probab=99.47 E-value=3.2e-13 Score=122.53 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=84.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCC--CcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFG--KSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA 124 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~--p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A 124 (245)
++++..+|+.+|+++||+++ |++++|||.+++++ ++++.. +..+..+++.||+ ...++++++++|+++..++..|
T Consensus 20 ~~~s~~eL~~eAa~~Al~dA-gl~~~dID~iv~~~-~~~~~~~~~~~~~~va~~LGl-~~~~~~~v~~~casg~~al~~A 96 (386)
T PRK08313 20 QDVSMAGLVREAIDRALADA-GLTWDDIDAVVVGK-APDFFEGVMMPELFLADALGA-TGKPLIRVHTAGSVGGSTAVVA 96 (386)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEec-cccccccccCchHHHHHhcCC-CCCceEEEeccCHHHHHHHHHH
Confidence 57889999999999999997 99999999999887 454321 2334789999999 4678999999999999999999
Q ss_pred HHHHhcCCCCCCeEEEEEeccccc
Q psy2407 125 INFILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 125 ~~~i~sg~~~~~~aLVv~~e~~s~ 148 (245)
..+|++|.+ ++||||++|+++.
T Consensus 97 ~~~I~sG~~--~~vLVvg~e~~s~ 118 (386)
T PRK08313 97 ASLVQSGVY--RRVLAVAWEKQSE 118 (386)
T ss_pred HHHHHCCCC--CEEEEEEEEEccC
Confidence 999999987 9999999998754
No 58
>cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.
Probab=99.46 E-value=3.7e-12 Score=115.87 Aligned_cols=126 Identities=15% Similarity=0.142 Sum_probs=91.9
Q ss_pred CHHHHHHHHHHHHHHhcCCCCcCCcCE----EEEEeccCC--------------------------CCCCcHHHHHHHHc
Q psy2407 50 DPVSFAINAAAPLIDNLSNIDKNSIEL----IITCSESGI--------------------------DFGKSMSTYIHHYL 99 (245)
Q Consensus 50 ~~~~la~~Aa~~aL~~a~g~~~~dId~----li~~t~~~~--------------------------~~~p~~a~~l~~~L 99 (245)
....|+.+|+++||+++ |+++++||. +++++..+. ...+..+..|+..|
T Consensus 70 ~~~~l~~~aa~~AL~dA-gl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 148 (406)
T cd00834 70 RFAQFALAAAEEALADA-GLDPEELDPERIGVVIGSGIGGLATIEEAYRALLEKGPRRVSPFFVPMALPNMAAGQVAIRL 148 (406)
T ss_pred HHHHHHHHHHHHHHHHc-CCCcccCCccceEEEEccCCcchHHHHHHHHHHHhcCCcccChhHHhhhcccHHHHHHHHHh
Confidence 45689999999999997 999877664 555554321 12245788999999
Q ss_pred CCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc-----------ccCcc--cc-cccccc--c
Q psy2407 100 GLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF-----------VTEDK--NE-LTMEWA--F 163 (245)
Q Consensus 100 Gl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~-----------~~~~~--~~-~~~~~~--~ 163 (245)
|++ .+.+.++.+|+|++.||..|..+|++|.+ +++||+++|..+.. +.... +. ...++. .
T Consensus 149 gl~--g~~~~v~~acas~~~Al~~A~~~i~~G~~--d~aLvgg~d~~~~p~~~~~~~~~~~l~~~~~~p~~~~~pf~~~~ 224 (406)
T cd00834 149 GLR--GPNYTVSTACASGAHAIGDAARLIRLGRA--DVVIAGGAEALITPLTLAGFAALRALSTRNDDPEKASRPFDKDR 224 (406)
T ss_pred CCC--CcccccchHHHHHHHHHHHHHHHHHcCCC--CEEEEcCcccccCHHHHHHHHhcCCcCCCCCCCccCCCCCCCCC
Confidence 994 47889999999999999999999999977 99999999987621 11110 00 011111 0
Q ss_pred ccccccceeEEEEecCC
Q psy2407 164 FEPSGGAGAVAMLISDK 180 (245)
Q Consensus 164 ~~~~~GDGAaA~ll~~~ 180 (245)
...++||||+|+||++.
T Consensus 225 ~g~~~geGA~a~vL~~~ 241 (406)
T cd00834 225 DGFVLGEGAGVLVLESL 241 (406)
T ss_pred CCEeeeccEEEEEEecH
Confidence 13579999999999863
No 59
>PRK05790 putative acyltransferase; Provisional
Probab=99.46 E-value=4.4e-13 Score=121.90 Aligned_cols=98 Identities=9% Similarity=0.077 Sum_probs=85.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN 126 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~ 126 (245)
.+++..+|+.+|+++||+++ |++++|||.+++++.++....+..+..++..+|++.++++++++++|+|++.+|..|..
T Consensus 22 ~~~~~~~La~~A~~~AL~dA-gl~~~dID~vi~g~~~~~~~~~~~~~~~~~~~gl~~~~~~~~v~~~Casg~~al~~A~~ 100 (393)
T PRK05790 22 KDVSAVELGAIVIKAALERA-GVPPEQVDEVIMGQVLQAGAGQNPARQAALKAGLPVEVPALTINKVCGSGLKAVALAAQ 100 (393)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHCCeEEEEEecCCCCCCcHHHHHHHHcCCCCCCceeeecccchHHHHHHHHHHH
Confidence 36889999999999999997 99999999999988765434455566677788995468899999999999999999999
Q ss_pred HHhcCCCCCCeEEEEEecccc
Q psy2407 127 FILSKVSPGAKALVIATDISR 147 (245)
Q Consensus 127 ~i~sg~~~~~~aLVv~~e~~s 147 (245)
+|++|.+ +++||+++|++|
T Consensus 101 ~I~sG~~--d~vLv~G~e~~s 119 (393)
T PRK05790 101 AIRAGDA--DIVVAGGQESMS 119 (393)
T ss_pred HHHcCCC--CEEEEEeeeccc
Confidence 9999977 999999999874
No 60
>PRK06954 acetyl-CoA acetyltransferase; Provisional
Probab=99.46 E-value=3.6e-13 Score=122.56 Aligned_cols=99 Identities=9% Similarity=0.052 Sum_probs=85.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN 126 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~ 126 (245)
.+.+..+|+.+|+++||+++ |++++|||.+|+++..++....+.+......+|++..+++++|+++|+||+.++..|..
T Consensus 27 ~~~~~~eL~~~a~~~aL~~A-gi~~~dID~vi~G~~~~~~~~~~~~~~~~l~ag~~~~~p~~~V~~aCaSG~~Av~~A~~ 105 (397)
T PRK06954 27 ASLTAPQLGAAAIAAAVERA-GLKPEQIDEVVMGCVLPAGQGQAPARQAALGAGLPLSVGCTTVNKMCGSGMRAAMFAHD 105 (397)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHcCEEEEEecCCCccchHHHHHHHHcCCCCCCccEeeccccchHHHHHHHHHHH
Confidence 46789999999999999996 99999999999998776544344454555567785568999999999999999999999
Q ss_pred HHhcCCCCCCeEEEEEeccccc
Q psy2407 127 FILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 127 ~i~sg~~~~~~aLVv~~e~~s~ 148 (245)
+|++|.+ +.+||+++|++|.
T Consensus 106 ~I~sG~~--d~vLv~G~E~ms~ 125 (397)
T PRK06954 106 MLVAGSV--DVIVAGGMESMTN 125 (397)
T ss_pred HHHCCCC--CEEEEEeeeccCC
Confidence 9999987 9999999999973
No 61
>smart00825 PKS_KS Beta-ketoacyl synthase. The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.
Probab=99.46 E-value=1.2e-12 Score=119.83 Aligned_cols=122 Identities=15% Similarity=0.126 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCcC----EEEEEeccCCCC-------------------CCcHHHHHHHHcCCCCCcce
Q psy2407 51 PVSFAINAAAPLIDNLSNIDKNSIE----LIITCSESGIDF-------------------GKSMSTYIHHYLGLNRNCRL 107 (245)
Q Consensus 51 ~~~la~~Aa~~aL~~a~g~~~~dId----~li~~t~~~~~~-------------------~p~~a~~l~~~LGl~~~~~~ 107 (245)
...|+.+|+++||+++ |+++++|| .|++++.++++. .+..+..++..||+. -++
T Consensus 87 ~~~l~~~aa~~Al~dA-Gl~~~~id~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~lgl~--g~~ 163 (424)
T smart00825 87 QQRLLLEVAWEALEDA-GIDPESLRGSRTGVFVGAMSSDYAELLARDPEDIEGYAATGTARSFIANRISYFFDLR--GPS 163 (424)
T ss_pred HHHHHHHHHHHHHHHc-CCChhHcCCCCCEEEEEEcHHHHHHHHhhCccccchhhhccchhHHHHHHHHHHhCCC--CCc
Confidence 3459999999999997 99999999 788887654332 345677899999994 378
Q ss_pred eeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc-----------ccCcccccccccc--cccccccceeEE
Q psy2407 108 FELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF-----------VTEDKNELTMEWA--FFEPSGGAGAVA 174 (245)
Q Consensus 108 ~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~-----------~~~~~~~~~~~~~--~~~~~~GDGAaA 174 (245)
+++..+|++++.||..|..+|++|.+ +.+||+++|..... +.+.. ...++. ....++||||+|
T Consensus 164 ~~v~~acasg~~Al~~A~~~I~~G~~--d~vlvgg~~~~~~~~~~~~~~~~~~l~~~~--~~~pf~~~~~g~~~geGAaa 239 (424)
T smart00825 164 VTVDTACSSSLVALHLACQSLRSGEC--DMALAGGVNLILSPDTFVGFSRAGMLSPDG--RCKTFDADADGYVRGEGVGV 239 (424)
T ss_pred cccccHhHHHHHHHHHHHHHHHcCCC--CeeEEeeeeecCCHHHHHHHhhcCCCCCCC--CCCCCCCCCCcccccceEEE
Confidence 99999999999999999999999977 99999999975321 11111 011111 023568999999
Q ss_pred EEecC
Q psy2407 175 MLISD 179 (245)
Q Consensus 175 ~ll~~ 179 (245)
+||++
T Consensus 240 lVLe~ 244 (424)
T smart00825 240 VVLKR 244 (424)
T ss_pred EEEcc
Confidence 99986
No 62
>PRK12404 stage V sporulation protein AD; Provisional
Probab=99.44 E-value=2e-12 Score=112.38 Aligned_cols=92 Identities=16% Similarity=0.203 Sum_probs=79.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHH
Q psy2407 48 YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINF 127 (245)
Q Consensus 48 ~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~ 127 (245)
++...+|+.+|+++||+++ |++++|||.++.++.+ .+..|+ ..+++.||+ |.+++.++|+++..+|.+|..+
T Consensus 51 EkAE~~L~~EA~~~AL~kA-GI~~~DID~i~vGdL~-nQ~ips--sfvar~LGI----P~~gV~gACSTg~eAL~lAa~~ 122 (334)
T PRK12404 51 EKAERKLLEEACSRAIEKA-KLRKEDIQFFLAGDLM-NQITPT--SFAARTLGI----PYLGLFGACSTSMEGLALAALI 122 (334)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEecC-CCcCcH--HHHHHHhCC----CccceeecCHHHHHHHHHHHHH
Confidence 4556789999999999997 9999999999999887 345554 499999996 3489999999999999999999
Q ss_pred HhcCCCCCCeEEEEEecccccc
Q psy2407 128 ILSKVSPGAKALVIATDISRFF 149 (245)
Q Consensus 128 i~sg~~~~~~aLVv~~e~~s~~ 149 (245)
|++|.+ ++||++++-.....
T Consensus 123 VaSG~A--d~VLavtsSH~~~a 142 (334)
T PRK12404 123 VNSGGA--KYVLTGASSHNAAV 142 (334)
T ss_pred HHcCCC--CEEEEEeCcccchh
Confidence 999977 99999998776443
No 63
>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=99.43 E-value=8.6e-13 Score=119.98 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=86.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHH-HHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMST-YIHHYLGLNRNCRLFELKQACYSCTAGLQMAI 125 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~-~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~ 125 (245)
..+.+.+|+.+|+++||+++ +++++|||.||+++.++++..+..+. .+++.+|+ .++++++|+++|+|++.++..|.
T Consensus 19 ~~~~~~el~~~a~~~Al~~a-gl~p~dID~vi~g~~~~~~~g~~~~~~~~~~~lg~-~~~p~~~V~~~Casg~~al~~A~ 96 (393)
T cd00826 19 ANDLAHEAGAKAIAAALEPA-GVAAGAVEEACLGQVLGAGEGQNCAQQAAMHAGGL-QEAPAIGMNNLCGSGLRALALAM 96 (393)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEEccCCcccCcHHHHHHHHcCCC-CCCcEEEecchhHHHHHHHHHHH
Confidence 35678999999999999996 99999999999998887655556665 36788888 57899999999999999999999
Q ss_pred HHHhcCCCCCCeEEEEEeccccc
Q psy2407 126 NFILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 126 ~~i~sg~~~~~~aLVv~~e~~s~ 148 (245)
.+|++|.+ +.+||+++|++|.
T Consensus 97 ~~I~sG~~--~~vlv~g~e~~s~ 117 (393)
T cd00826 97 QLIAGGDA--NCILAGGFEKMET 117 (393)
T ss_pred HHHHCCCC--CEEEEEeeecccc
Confidence 99999977 9999999999864
No 64
>PRK06059 lipid-transfer protein; Provisional
Probab=99.42 E-value=1.1e-12 Score=119.58 Aligned_cols=97 Identities=22% Similarity=0.240 Sum_probs=85.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCC-CCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407 48 YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGID-FGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN 126 (245)
Q Consensus 48 ~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~-~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~ 126 (245)
+++..+|+.+|+++||+++ |++++|||.||++++.+.. ..+..+..++..||+ ..+++++++++|++++.+|..|..
T Consensus 20 ~~~~~~La~~A~~~Al~dA-gl~~~dId~vi~~~~~~~~~~~~~~a~~va~~lG~-~~~~~~~v~~~Casg~~al~~A~~ 97 (399)
T PRK06059 20 GRDFVEYGVVAARAALADA-GLDWRDVQLVVGADTIRNGYPGFVAGATFAQALGW-NGAPVSSSYAACASGSQALQSARA 97 (399)
T ss_pred CCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeccCCccCCccHHHHHHHHhCC-CCCceecccchhHHHHHHHHHHHH
Confidence 5678999999999999997 9999999999988766543 334567899999999 468899999999999999999999
Q ss_pred HHhcCCCCCCeEEEEEeccccc
Q psy2407 127 FILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 127 ~i~sg~~~~~~aLVv~~e~~s~ 148 (245)
+|++|.+ +++||+++|+++.
T Consensus 98 ~I~sG~~--~~vLvvg~e~~s~ 117 (399)
T PRK06059 98 QILAGLC--DVALVVGADTTPK 117 (399)
T ss_pred HHHCCCC--CEEEEEEEcccCC
Confidence 9999977 9999999998764
No 65
>PLN02287 3-ketoacyl-CoA thiolase
Probab=99.42 E-value=1.3e-12 Score=120.55 Aligned_cols=99 Identities=7% Similarity=0.069 Sum_probs=86.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCC-cHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGK-SMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI 125 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p-~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~ 125 (245)
.+.+..+|+.+|+++||+++ |++++|||.||+++.++....+ ..+..++..+|+++.+++++|+.+|+|++.++..|.
T Consensus 67 ~~~s~~eLa~eA~~~AL~dA-gl~~~dID~vv~G~~~~~~~~~~~~~r~~a~~~Gl~~~~pa~~V~~~CaSG~~Ai~~Aa 145 (452)
T PLN02287 67 KDTYPDDLLAPVLKAVVEKT-GLNPSEVGDIVVGTVLAPGSQRANECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVA 145 (452)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeecCcccccchHHHHHHHHCCCCCCcceEEEeccCchHHHHHHHHH
Confidence 47899999999999999997 9999999999998876655443 345677788999656899999999999999999999
Q ss_pred HHHhcCCCCCCeEEEEEeccccc
Q psy2407 126 NFILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 126 ~~i~sg~~~~~~aLVv~~e~~s~ 148 (245)
..|++|.+ +.+||++.|++|.
T Consensus 146 ~~I~sG~~--dvvLv~GvE~mS~ 166 (452)
T PLN02287 146 AAIKAGFY--DIGIGAGVESMTT 166 (452)
T ss_pred HHHHcCCC--CeEEEEeEEecCC
Confidence 99999977 9999999998864
No 66
>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.
Probab=99.41 E-value=1.3e-12 Score=117.92 Aligned_cols=98 Identities=21% Similarity=0.273 Sum_probs=89.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHH
Q psy2407 48 YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINF 127 (245)
Q Consensus 48 ~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~ 127 (245)
+.+..+|+.+|+++||+++ |+++++||.++++++.+....+..+..++..||++ .+++++++++|++++.++..|..+
T Consensus 13 ~~~~~eL~~~A~~~Al~da-gl~~~~Id~vi~g~~~~~~~~~~~a~~va~~lGl~-~~~~~~v~~~c~sg~~al~~Aa~~ 90 (375)
T cd00829 13 DRSPLELAAEAARAALDDA-GLEPADIDAVVVGNAAGGRFQSFPGALIAEYLGLL-GKPATRVEAAGASGSAAVRAAAAA 90 (375)
T ss_pred CCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEecccccccccchHHHHHHHcCCC-CcceeeEeCccHHHHHHHHHHHHH
Confidence 7889999999999999997 99999999999988776554577889999999995 789999999999999999999999
Q ss_pred HhcCCCCCCeEEEEEecccccc
Q psy2407 128 ILSKVSPGAKALVIATDISRFF 149 (245)
Q Consensus 128 i~sg~~~~~~aLVv~~e~~s~~ 149 (245)
|++|.+ +.+||+++|+++..
T Consensus 91 I~sG~~--~~vlv~g~e~~s~~ 110 (375)
T cd00829 91 IASGLA--DVVLVVGAEKMSDV 110 (375)
T ss_pred HHhCCC--CEEEEEEEeecccC
Confidence 999977 99999999988653
No 67
>PRK07661 acetyl-CoA acetyltransferase; Provisional
Probab=99.41 E-value=1.5e-12 Score=118.29 Aligned_cols=98 Identities=12% Similarity=0.093 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407 48 YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN 126 (245)
Q Consensus 48 ~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~ 126 (245)
+.+..+|+.+|+++||+++ |+.++|||.+++++..++.. .+..+..++..+|++..+++++|+++|+||+.++..|..
T Consensus 24 ~~~~~eLa~~A~~~AL~~a-g~~~~dID~vi~g~~~~~~~~g~~~a~~~~~~lGl~~~~p~~~V~~aCaSG~~Al~~A~~ 102 (391)
T PRK07661 24 TVRPDDLGALVVKETLKRA-GNYEGPIDDLIIGCAMPEAEQGLNMARNIGALAGLPYTVPAITINRYCSSGLQSIAYGAE 102 (391)
T ss_pred CCCHHHHHHHHHHHHHHhc-CCChhHCCEEEEEeccccccccchHHHHHHHHcCCCCCcceeehhhhhhHHHHHHHHHHH
Confidence 5688999999999999996 98889999999998776544 367788899999995459999999999999999999999
Q ss_pred HHhcCCCCCCeEEEEEeccccc
Q psy2407 127 FILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 127 ~i~sg~~~~~~aLVv~~e~~s~ 148 (245)
+|++|.+ +.+||++.|++|.
T Consensus 103 ~I~sG~~--d~vLv~G~E~ms~ 122 (391)
T PRK07661 103 RIMLGHS--EAVIAGGAESMSL 122 (391)
T ss_pred HHHcCCC--CEEEEEEEeeccc
Confidence 9999977 9999999999874
No 68
>PRK06064 acetyl-CoA acetyltransferase; Provisional
Probab=99.37 E-value=3.5e-12 Score=115.85 Aligned_cols=98 Identities=19% Similarity=0.177 Sum_probs=87.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCC--CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDF--GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA 124 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~--~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A 124 (245)
++++..+|+.+|+++||+++ |+++++||.+++++++++.. .+..+..++..||++ ..++++++++|+++..+|..|
T Consensus 18 ~~~~~~eLa~~a~~~Al~da-gl~~~~Id~vi~g~~~~~~~~~~~~~a~~va~~lGl~-~~~~~~v~~aCasg~~ai~~A 95 (389)
T PRK06064 18 WDVSLRDLAVEAGLEALEDA-GIDGKDIDAMYVGNMSAGLFVSQEHIAALIADYAGLA-PIPATRVEAACASGGAALRQA 95 (389)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEecccccccccccHHHHHHHHcCCC-CCCeeEEeCCcHHHHHHHHHH
Confidence 46789999999999999997 99999999999988766543 367788999999995 688999999999999999999
Q ss_pred HHHHhcCCCCCCeEEEEEeccccc
Q psy2407 125 INFILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 125 ~~~i~sg~~~~~~aLVv~~e~~s~ 148 (245)
..+|++|.+ +++||+++|.++.
T Consensus 96 ~~~I~sG~~--~~vLv~G~e~~s~ 117 (389)
T PRK06064 96 YLAVASGEA--DVVLAAGVEKMTD 117 (389)
T ss_pred HHHHHCCCC--CEEEEEEEEeccc
Confidence 999999987 9999999998654
No 69
>PRK06065 acetyl-CoA acetyltransferase; Provisional
Probab=99.37 E-value=3.7e-12 Score=115.70 Aligned_cols=95 Identities=17% Similarity=0.152 Sum_probs=83.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCC--CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDF--GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA 124 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~--~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A 124 (245)
++++..+|+.+|+++||+++ |++++|||.+|+++. ++.. .+..+..+++.||+. +.++++|+++|+++..+|..|
T Consensus 25 ~~~~~~~L~~~A~~~Al~da-gl~~~dID~~i~~~~-~~~~~~~~~~a~~l~~~lG~~-~~~~~~V~~~gasG~~al~~A 101 (392)
T PRK06065 25 LLETPQELAWEAASKALDEA-GLELKDIDCVVIGSA-PDAFDGVHMKGEYLSHGSGGI-RKPVSRVYVGGATGVMTAIAG 101 (392)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEecc-CCcccccccHHHHHHHHcCCC-CCCeEEEecCchhHHHHHHHH
Confidence 47889999999999999997 999999999998763 3322 456788899999994 578999999999999999999
Q ss_pred HHHHhcCCCCCCeEEEEEeccc
Q psy2407 125 INFILSKVSPGAKALVIATDIS 146 (245)
Q Consensus 125 ~~~i~sg~~~~~~aLVv~~e~~ 146 (245)
..+|++|.+ ++||||++|++
T Consensus 102 ~~~I~sG~a--d~vLVvg~e~~ 121 (392)
T PRK06065 102 WYHVASGLC--QKVLAVAEEKM 121 (392)
T ss_pred HHHHhCCCC--CEEEEEEeecc
Confidence 999999988 99999999985
No 70
>PRK06289 acetyl-CoA acetyltransferase; Provisional
Probab=99.37 E-value=3.1e-12 Score=116.79 Aligned_cols=101 Identities=15% Similarity=0.119 Sum_probs=81.1
Q ss_pred eeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCC-----CcHHHHHHHHcCCCCCcceeeecCcchh
Q psy2407 42 KSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFG-----KSMSTYIHHYLGLNRNCRLFELKQACYS 116 (245)
Q Consensus 42 r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~-----p~~a~~l~~~LGl~~~~~~~dv~~~C~~ 116 (245)
|++..++++..+|+.+|+++||+++ |++++|||.+|++++++++.. +..... ..+++ .++++++++++|++
T Consensus 17 r~~~~~~~s~~eLa~eA~~~AL~dA-gl~~~dID~vi~g~~~~~~~~~~~~~~~~~~~--~~~~~-~g~~~~~v~~~Cas 92 (403)
T PRK06289 17 RNWTKEGRDFADLTREVVDGTLAAA-GVDADDIEVVHVGNFFGELFAGQGHLGAMPAT--VHPAL-WGVPASRHEAACAS 92 (403)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeccccccccccccchHHHH--HhhcC-CCCceeecccccHH
Confidence 3444468999999999999999997 999999999999887665332 222221 22344 24678999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCeEEEEEeccccc
Q psy2407 117 CTAGLQMAINFILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 117 ~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~ 148 (245)
++.+|..|..+|++|.+ ++|||+++|+++.
T Consensus 93 g~~al~~Aa~~I~sG~~--~~VLvvg~e~~s~ 122 (403)
T PRK06289 93 GSVATLAAMADLRAGRY--DVALVVGVELMKT 122 (403)
T ss_pred HHHHHHHHHHHHHcCCC--CEEEEEEEEecCC
Confidence 99999999999999977 9999999998753
No 71
>PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed
Probab=99.35 E-value=4.2e-12 Score=116.66 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=88.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN 126 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~ 126 (245)
.+.+..+|+.+|+++||+++ |+++++||.+++++..+....+.++..++..+|++..++++.|+++|+|++.|+..|..
T Consensus 25 ~~~~~~eL~~~a~~~al~~a-gl~~~~ID~vi~G~~~~~~~~~~~ar~~a~~aGl~~~~P~~tV~~aCaSG~~Ai~~Aa~ 103 (428)
T PRK08963 25 HGIPAVDLGKMVVGELLARS-EIDPELIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAE 103 (428)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEeccCCCCCccHHHHHHHHHCCCCCCCcceeehhhhHHHHHHHHHHHH
Confidence 57789999999999999996 99999999999998654333356777899999996569999999999999999999999
Q ss_pred HHhcCCCCCCeEEEEEecccccc
Q psy2407 127 FILSKVSPGAKALVIATDISRFF 149 (245)
Q Consensus 127 ~i~sg~~~~~~aLVv~~e~~s~~ 149 (245)
+|++|.+ +.+|+++.|++|..
T Consensus 104 ~I~sG~~--dvvLvgG~Esms~~ 124 (428)
T PRK08963 104 SIMAGTI--DIGIAGGADSSSVL 124 (428)
T ss_pred HHHCCCC--CEEEEecccccCCC
Confidence 9999977 99999999999753
No 72
>PRK08131 acetyl-CoA acetyltransferase; Provisional
Probab=99.35 E-value=6.5e-12 Score=114.41 Aligned_cols=100 Identities=14% Similarity=0.056 Sum_probs=88.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI 125 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~ 125 (245)
.+.++.+|+.+|+++||+++ |++++|||.+++++..+... .+.++..++..+|++..++++.|+++|+|++.|+..|.
T Consensus 22 ~~~~~~eL~~~a~~~al~~a-gi~~~~Id~v~~G~~~~~~~~~~~~ar~~~~~~Glp~~~p~~tV~~~CaSG~~Ai~~A~ 100 (401)
T PRK08131 22 ASVRPDDLAATVIRRLLEKS-GFPGDDIEDVILGCTNQAGEDSRNVARNALLLAGLPVTVPGQTVNRLCASGLAAVIDAA 100 (401)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeccccccccccHHHHHHHhcCCCCCCceeeeechhhhHHHHHHHHH
Confidence 36789999999999999996 99999999999998754332 35677788999999657999999999999999999999
Q ss_pred HHHhcCCCCCCeEEEEEecccccc
Q psy2407 126 NFILSKVSPGAKALVIATDISRFF 149 (245)
Q Consensus 126 ~~i~sg~~~~~~aLVv~~e~~s~~ 149 (245)
..|++|.+ +.+|+++.|++|..
T Consensus 101 ~~I~sG~~--dvvlagG~Esms~~ 122 (401)
T PRK08131 101 RAITCGEG--DLYLAGGVESMSRA 122 (401)
T ss_pred HHHHCCCC--CEEEEEEecCCCCC
Confidence 99999977 99999999999754
No 73
>PRK07850 acetyl-CoA acetyltransferase; Provisional
Probab=99.34 E-value=7.5e-12 Score=113.56 Aligned_cols=99 Identities=10% Similarity=0.089 Sum_probs=86.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI 125 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~ 125 (245)
.+.++.+|+.+|++++|+++ |+++++||.+++++..+... ....+..+...+|++.+++++.|+++|+|++.|+..|.
T Consensus 22 ~~~~~~eL~~~a~~~aL~~a-gi~~~~Id~v~~G~~~~~~~q~~~~ar~~~l~~Gl~~~~p~~tV~~~CaSG~~A~~~A~ 100 (387)
T PRK07850 22 SGLHAAELLGAVQRAVLDRA-GIDPGDVEQVIGGCVTQAGEQSNNITRTAWLHAGLPYHVGATTIDCQCGSAQQANHLVA 100 (387)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeccccccccchHHHHHHHhCCCCCCCceEEEecccccHHHHHHHHH
Confidence 36778999999999999996 99999999999987653222 24567788888999657999999999999999999999
Q ss_pred HHHhcCCCCCCeEEEEEeccccc
Q psy2407 126 NFILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 126 ~~i~sg~~~~~~aLVv~~e~~s~ 148 (245)
+.|++|.+ +.+|+++.|++|.
T Consensus 101 ~~I~sG~~--dvvla~G~E~mS~ 121 (387)
T PRK07850 101 GLIAAGAI--DVGIACGVEAMSR 121 (387)
T ss_pred HHHHCCCC--CEEEEEeEecCCC
Confidence 99999977 9999999999975
No 74
>PRK13359 beta-ketoadipyl CoA thiolase; Provisional
Probab=99.34 E-value=8.1e-12 Score=113.70 Aligned_cols=100 Identities=12% Similarity=0.065 Sum_probs=89.2
Q ss_pred CCCCHHHHHHHHHHHHHHh-cCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDN-LSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA 124 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~-a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A 124 (245)
.+.++.+|+.+|++++|++ + |+++++||.+|+++..+... .+.++..+...+||+.+++++.|++.|+|++.|+..|
T Consensus 22 ~~~~~~~L~~~a~~~al~r~a-~i~~~~Id~vi~G~~~~~~~~g~~~ar~~~l~~Gl~~~vp~~tV~~~CaSG~~Av~~A 100 (400)
T PRK13359 22 SSVRADDLGAVPLKALVERNP-DVDWAAIDDVIYGCANQAGEDNRNVARMSLLLAGLPHGVPGSTINRLCGSGMDAVGVA 100 (400)
T ss_pred CCCCHHHHHHHHHHHHHHhcc-CCCHHHCCEEEEEeccccccccccHHHHHHHHcCCCCCCceEEEeccchhHHHHHHHH
Confidence 4567899999999999996 5 99999999999998764332 3788999999999976699999999999999999999
Q ss_pred HHHHhcCCCCCCeEEEEEecccccc
Q psy2407 125 INFILSKVSPGAKALVIATDISRFF 149 (245)
Q Consensus 125 ~~~i~sg~~~~~~aLVv~~e~~s~~ 149 (245)
.+.|++|.+ +.+|+++.|++|..
T Consensus 101 ~~~I~sG~~--divlagGvEsmS~~ 123 (400)
T PRK13359 101 ARAIKSGEA--ALMIAGGVESMSRA 123 (400)
T ss_pred HHHHHcCCC--CEEEEeeeeccCCC
Confidence 999999977 99999999999864
No 75
>PRK06633 acetyl-CoA acetyltransferase; Provisional
Probab=99.33 E-value=5.4e-12 Score=114.52 Aligned_cols=100 Identities=13% Similarity=0.132 Sum_probs=88.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407 46 LPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI 125 (245)
Q Consensus 46 ~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~ 125 (245)
..+.++.+|+.+|++++|+++ |+++++||.+++++..+.......+..++..+|++..+|++.|+++|+|++.++..|.
T Consensus 22 l~~~~~~~L~~~a~~~al~~a-gi~~~~Id~vv~G~~~~~~~g~~~~r~~~~~~Gl~~~~p~~~V~~~CaSG~~Ai~~A~ 100 (392)
T PRK06633 22 LSTTPAPMLAAHLIKDILQNS-KIDPALVNEVILGQVITGGSGQNPARQTLIHAGIPKEVPGYTINKVCGSGLKSVALAA 100 (392)
T ss_pred cCCCCHHHHHHHHHHHHHHHc-CCCHHHcCEEEEEecCccccccHHHHHHHHHCCCCCCccchhhcchhHHHHHHHHHHH
Confidence 457889999999999999996 9999999999999776443345677888899999656999999999999999999999
Q ss_pred HHHhcCCCCCCeEEEEEeccccc
Q psy2407 126 NFILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 126 ~~i~sg~~~~~~aLVv~~e~~s~ 148 (245)
.+|++|.+ +.+|+++.|++|.
T Consensus 101 ~~I~sG~~--dvvla~G~E~ms~ 121 (392)
T PRK06633 101 NSIMTGDN--EIVIAGGQENMSL 121 (392)
T ss_pred HHHHcCCC--CEEEEcccccCCC
Confidence 99999977 9999999999874
No 76
>PRK09050 beta-ketoadipyl CoA thiolase; Validated
Probab=99.33 E-value=9.1e-12 Score=113.46 Aligned_cols=100 Identities=9% Similarity=0.028 Sum_probs=88.9
Q ss_pred CCCCHHHHHHHHHHHHHHh-cCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDN-LSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA 124 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~-a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A 124 (245)
.+.++.+|+.+|++++|++ + |+++++||.|++++..+... .++.+..++..+|++.++|++.|+++|+|++.|+..|
T Consensus 22 ~~~~~~~L~~~a~~~al~~~a-gi~~~~Id~v~~G~~~~~~~~~~~~ar~~~~~~Gl~~~vP~~tV~~aCaSG~~Ai~~A 100 (401)
T PRK09050 22 SSVRADDLGAVPLKALMARNP-GVDWEAVDDVIYGCANQAGEDNRNVARMSALLAGLPVSVPGTTINRLCGSGMDAVGTA 100 (401)
T ss_pred CCCCHHHHHHHHHHHHHHhcc-CCCHHHCCEEEEEeccccccccchHHHHHHHHcCCCCCCceEEEecccccHHHHHHHH
Confidence 4678899999999999994 6 99999999999998764332 3677888999999976799999999999999999999
Q ss_pred HHHHhcCCCCCCeEEEEEecccccc
Q psy2407 125 INFILSKVSPGAKALVIATDISRFF 149 (245)
Q Consensus 125 ~~~i~sg~~~~~~aLVv~~e~~s~~ 149 (245)
.+.|++|.+ +.+|+++.|++|..
T Consensus 101 ~~~I~sG~~--dvvlagGvEsmS~~ 123 (401)
T PRK09050 101 ARAIKAGEA--ELMIAGGVESMSRA 123 (401)
T ss_pred HHHHHCCCC--CEEEEecccccccC
Confidence 999999977 99999999999864
No 77
>TIGR02446 FadI fatty oxidation complex, beta subunit FadI. This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (TIGR02440). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in E. coli.
Probab=99.32 E-value=8.5e-12 Score=114.56 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=86.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN 126 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~ 126 (245)
.+.+..+|+.+|+++||+++ |+++++||.+|+++..+....+.++..+.-..|++..+|++.|+++|+|++.|+..|..
T Consensus 27 ~~~~~~~L~~~a~~~al~~a-gl~~~~Id~vi~G~~~~~~~~~~~ar~~~l~aGl~~~~p~~~V~~~CaSG~~A~~~a~~ 105 (430)
T TIGR02446 27 HGIPAVDLGKMVVSELLARS-EIDPKLIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVTRACATSFQSAVNVAE 105 (430)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeccCcCccchHHHHHHHhCCCCCCCchhhhhhhhhHHHHHHHHHHH
Confidence 46788999999999999996 99999999999998765333355666777778996579999999999999999999999
Q ss_pred HHhcCCCCCCeEEEEEeccccc
Q psy2407 127 FILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 127 ~i~sg~~~~~~aLVv~~e~~s~ 148 (245)
+|++|.+ +.+|+++.|++|.
T Consensus 106 ~I~sG~~--dvvla~G~E~mS~ 125 (430)
T TIGR02446 106 SIMAGAI--DIGIAGGADSSSV 125 (430)
T ss_pred HHHCCCC--CEEEEeeeEcccC
Confidence 9999987 9999999999985
No 78
>PRK06445 acetyl-CoA acetyltransferase; Provisional
Probab=99.32 E-value=8.5e-12 Score=113.55 Aligned_cols=99 Identities=14% Similarity=0.061 Sum_probs=81.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCC-cHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGK-SMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI 125 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p-~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~ 125 (245)
.+.+..+|+.+|+++||+++ |++++|||.+++++..++...| ..+....-..+++.++++++|+++|+|++.++..|.
T Consensus 28 ~~~~~~~L~~~a~~~AL~~a-gl~~~dID~vi~g~~~~~~~~~~~~~~~~~l~a~~~~~~p~~~V~~~CaSg~~ai~~A~ 106 (394)
T PRK06445 28 NNIRPEELAAMLINRLIEKT-GIKPEEIDDIITGCALQVGENWLYGGRHPIFLARLPYNIPAMAVDRQCASSLTTVSIGA 106 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHCCeeEEEeecCCCcccccHHHHHHHHcCCCCCCcchhhhhhhHHHHHHHHHHH
Confidence 36789999999999999997 9999999999999887754322 223332223334346899999999999999999999
Q ss_pred HHHhcCCCCCCeEEEEEeccccc
Q psy2407 126 NFILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 126 ~~i~sg~~~~~~aLVv~~e~~s~ 148 (245)
.+|++|.+ +++||++.|+++.
T Consensus 107 ~~I~sG~~--d~vLv~G~e~ms~ 127 (394)
T PRK06445 107 MEIATGMA--DIVIAGGVEHMTR 127 (394)
T ss_pred HHHHcCCC--CEEEEeeeccccc
Confidence 99999987 9999999998763
No 79
>PRK07516 acetyl-CoA acetyltransferase; Provisional
Probab=99.31 E-value=1.4e-11 Score=112.04 Aligned_cols=98 Identities=15% Similarity=0.080 Sum_probs=80.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCC--CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDF--GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA 124 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~--~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A 124 (245)
.+++..+|+.+|+++||+++ |++++|||.|++++..+... .+..+..+...+|+ ..+++++++++|+|++.+|..|
T Consensus 18 ~~~~~~eL~~eA~~~AL~dA-gl~~~dId~vi~g~~~~~~~~~~~~~~~~~~~~~gl-~~~p~~~v~~~CaSg~~Al~~A 95 (389)
T PRK07516 18 DAETLESLIVRVAREALAHA-GIAAGDVDGIFLGHFNAGFSPQDFPASLVLQADPAL-RFKPATRVENACATGSAAVYAA 95 (389)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEEecCCccccccchhHHHHHhcCC-CCCceeeeccccHHHHHHHHHH
Confidence 46888999999999999997 99999999999987643221 11122334456787 4788999999999999999999
Q ss_pred HHHHhcCCCCCCeEEEEEeccccc
Q psy2407 125 INFILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 125 ~~~i~sg~~~~~~aLVv~~e~~s~ 148 (245)
..+|++|.+ +++||+++|+++.
T Consensus 96 ~~~I~sG~~--d~vLvvg~e~~s~ 117 (389)
T PRK07516 96 LDAIEAGRA--RIVLVVGAEKMTA 117 (389)
T ss_pred HHHHHCCCC--CEEEEEEehhhcc
Confidence 999999987 9999999999753
No 80
>PRK07851 acetyl-CoA acetyltransferase; Provisional
Probab=99.30 E-value=1.7e-11 Score=112.02 Aligned_cols=99 Identities=15% Similarity=0.118 Sum_probs=85.9
Q ss_pred CCCCHHHHHHHHHHHHHHh-cCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDN-LSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA 124 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~-a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A 124 (245)
.+.+..+|+.+|+++||++ + |++++|||.+++++..+... .+..+..++..+|+ ..++++.++++|+++..++..|
T Consensus 23 ~~~~~~eL~~~A~~~AL~da~-gl~~~dID~vv~g~~~~~~~~g~~~~~~~a~~lGl-~~~p~~~v~~~caSG~~av~~A 100 (406)
T PRK07851 23 KDMRPDDLAAQMVRAALDKVP-ALDPTDIDDLMLGCGLPGGEQGFNMARVVAVLLGY-DFLPGTTVNRYCSSSLQTTRMA 100 (406)
T ss_pred CCCCHHHHHHHHHHHHHHhcc-CCCHHHCCEEEEEcccccccccCCHHHHHHHHcCC-CCCCeeeeeccchhHHHHHHHH
Confidence 4678899999999999999 4 99999999999876543222 35667889999999 4689999999999999999999
Q ss_pred HHHHhcCCCCCCeEEEEEecccccc
Q psy2407 125 INFILSKVSPGAKALVIATDISRFF 149 (245)
Q Consensus 125 ~~~i~sg~~~~~~aLVv~~e~~s~~ 149 (245)
..+|++|.+ +.+||++.|+++..
T Consensus 101 a~~I~sG~~--d~vLv~G~e~~s~~ 123 (406)
T PRK07851 101 FHAIKAGEG--DVFISAGVETVSRF 123 (406)
T ss_pred HHHHHCCCC--CEEEEeeEEecccC
Confidence 999999987 99999999998653
No 81
>PRK06366 acetyl-CoA acetyltransferase; Provisional
Probab=99.30 E-value=1.6e-11 Score=111.53 Aligned_cols=98 Identities=12% Similarity=0.077 Sum_probs=85.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHH
Q psy2407 48 YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINF 127 (245)
Q Consensus 48 ~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~ 127 (245)
+.+..+|+.+|+++||+++ |++++|||.+++++..+....+..+..++..+|++.+++++.++++|+|++.++..|...
T Consensus 23 ~~~~~~L~~~a~~~al~da-gi~~~dID~vi~g~~~~~~~~~~~a~~~~~~~Gl~~~~p~~~v~~~caSg~~av~~Aa~~ 101 (388)
T PRK06366 23 KIKAPQLGGAAIKAVIDDA-KLDPALVQEVIMGNVIQAGVGQNPAGQAAYHAGLPFGVTKYTVNVVCASGMLAVESAARE 101 (388)
T ss_pred CCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEecCCCCccCcHHHHHHHHCCCCCCCcceeeechhhHHHHHHHHHHHH
Confidence 5788999999999999997 999999999999876543223355778899999965689999999999999999999999
Q ss_pred HhcCCCCCCeEEEEEeccccc
Q psy2407 128 ILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 128 i~sg~~~~~~aLVv~~e~~s~ 148 (245)
|++|.+ +.+|+++.|+++.
T Consensus 102 I~sG~~--d~vla~G~e~ms~ 120 (388)
T PRK06366 102 IMLGER--DLVIAGGMENMSN 120 (388)
T ss_pred HhcCCC--CEEEEEeeEcccc
Confidence 999977 9999988898774
No 82
>TIGR02430 pcaF beta-ketoadipyl CoA thiolase. Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid.
Probab=99.30 E-value=1.6e-11 Score=111.82 Aligned_cols=100 Identities=13% Similarity=0.062 Sum_probs=88.4
Q ss_pred CCCCHHHHHHHHHHHHHH-hcCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLID-NLSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA 124 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~-~a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A 124 (245)
.+.++.+|+.+|++++|+ ++ |+++++||.+++++..+... .+..+..++..+|++.++|++.|+++|+|++.|+..|
T Consensus 21 ~~~~~~~L~~~a~~~al~~~a-~i~~~~Id~v~~G~~~~~~~~~~~~ar~~~~~~Gl~~~~p~~~V~~~CaSG~~Ai~~a 99 (400)
T TIGR02430 21 SSVRADDLAAVPIKALLARNP-QLDWAAIDDVIYGCANQAGEDNRNVARMAALLAGLPVSVPGTTVNRLCGSGLDAIGMA 99 (400)
T ss_pred CCCCHHHHHHHHHHHHHHhcc-CCCHHHCCEEEEEeccccccccccHHHHHHHHcCCCCCCceEEeechhhhHHHHHHHH
Confidence 467889999999999999 45 99999999999997754222 3678888999999965799999999999999999999
Q ss_pred HHHHhcCCCCCCeEEEEEecccccc
Q psy2407 125 INFILSKVSPGAKALVIATDISRFF 149 (245)
Q Consensus 125 ~~~i~sg~~~~~~aLVv~~e~~s~~ 149 (245)
...|++|.+ +.+|+++.|++|..
T Consensus 100 ~~~I~sG~~--d~~la~G~E~ms~~ 122 (400)
T TIGR02430 100 ARAIKAGEA--DLLIAGGVESMSRA 122 (400)
T ss_pred HHHHHCCCC--CEEEEeccccccCC
Confidence 999999977 99999999999864
No 83
>PRK06504 acetyl-CoA acetyltransferase; Provisional
Probab=99.29 E-value=2.4e-11 Score=110.34 Aligned_cols=100 Identities=15% Similarity=0.119 Sum_probs=85.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI 125 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~ 125 (245)
.+.++.+|+.+|+++||+++ |++++|||.+|+++..+... .+..+..+.-..||+.++|++.|+++|+|++.|+..|.
T Consensus 22 ~~~~~~~L~~~a~~~al~~a-~l~~~~Id~vi~G~~~~~~~~~~~~ar~~~l~~gl~~~vP~~tV~~~CaSG~~Ai~~A~ 100 (390)
T PRK06504 22 AGWHPADLAAQVLDALVDRS-GADPALIEDVIMGCVSQVGEQATNVARNAVLASKLPESVPGTSIDRQCGSSQQALHFAA 100 (390)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeccccccccccHHHHHHHHcCCCCCCceEEEechhhHHHHHHHHHH
Confidence 47789999999999999996 99999999999987763222 24566655555688667999999999999999999999
Q ss_pred HHHhcCCCCCCeEEEEEecccccc
Q psy2407 126 NFILSKVSPGAKALVIATDISRFF 149 (245)
Q Consensus 126 ~~i~sg~~~~~~aLVv~~e~~s~~ 149 (245)
+.|++|.+ +.+|+++.|++|..
T Consensus 101 ~~I~sG~~--dvvLagGvEsmS~~ 122 (390)
T PRK06504 101 QAVMSGTM--DIVIAAGVESMTRV 122 (390)
T ss_pred HHHHCCCC--CEEEEeeeeecCCC
Confidence 99999987 99999999999753
No 84
>PLN02644 acetyl-CoA C-acetyltransferase
Probab=99.29 E-value=2.6e-11 Score=110.30 Aligned_cols=98 Identities=9% Similarity=0.077 Sum_probs=84.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN 126 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~ 126 (245)
.+.+..+|+.+|+++||+++ |++++|||.+++++.......+..+..++..+|++.+.+++.++++|++++.++..|.+
T Consensus 21 ~~~~~~~L~~~a~~~al~dA-gl~~~~ID~vv~g~~~~~~~~~~~~~~~~~~~Gl~~~~p~~~v~~~caSg~~av~~Aa~ 99 (394)
T PLN02644 21 SSLSATELGSIAIQAALERA-GVDPALVQEVFFGNVLSANLGQAPARQAALGAGLPPSTICTTVNKVCASGMKAVMLAAQ 99 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEecCcCCcCCcHHHHHHHhcCCCCCCceEEEeccchHHHHHHHHHHH
Confidence 35788999999999999997 99999999999876543222334566788999996568899999999999999999999
Q ss_pred HHhcCCCCCCeEEEEEecccc
Q psy2407 127 FILSKVSPGAKALVIATDISR 147 (245)
Q Consensus 127 ~i~sg~~~~~~aLVv~~e~~s 147 (245)
+|++|.+ +.+||++.|++|
T Consensus 100 ~I~sG~~--d~vlv~G~E~~s 118 (394)
T PLN02644 100 SIQLGIN--DVVVAGGMESMS 118 (394)
T ss_pred HHHcCCC--CEEEEEeEEecC
Confidence 9999977 999999999886
No 85
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.
Probab=99.28 E-value=5e-11 Score=108.90 Aligned_cols=122 Identities=14% Similarity=0.115 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCcCE----EEEEeccCCC-------------------CCCcHHHHHHHHcCCCCCcce
Q psy2407 51 PVSFAINAAAPLIDNLSNIDKNSIEL----IITCSESGID-------------------FGKSMSTYIHHYLGLNRNCRL 107 (245)
Q Consensus 51 ~~~la~~Aa~~aL~~a~g~~~~dId~----li~~t~~~~~-------------------~~p~~a~~l~~~LGl~~~~~~ 107 (245)
...|+.+|+++||+++ |+++++++. +++++..+++ ..+..+..++..+|++ .++
T Consensus 87 ~~~l~~~aa~~AL~dA-gl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~gl~--g~~ 163 (421)
T cd00833 87 QQRLLLEVAWEALEDA-GYSPESLAGSRTGVFVGASSSDYLELLARDPDEIDAYAATGTSRAFLANRISYFFDLR--GPS 163 (421)
T ss_pred HHHHHHHHHHHHHHHc-CCCchhcCCCCceEEeCcCHHHHHHHHhhcccccCcccccCcchHHHHHHHHHHcCCC--CCc
Confidence 4789999999999997 999888774 6666654321 1134677899999994 488
Q ss_pred eeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc-----------ccCcccccccccc--cccccccceeEE
Q psy2407 108 FELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF-----------VTEDKNELTMEWA--FFEPSGGAGAVA 174 (245)
Q Consensus 108 ~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~-----------~~~~~~~~~~~~~--~~~~~~GDGAaA 174 (245)
+.+..+|++++.||..|..+|++|.+ +.+||+++|..... +.+.. ...++. ....++||||+|
T Consensus 164 ~~v~~acas~~~Al~~A~~~I~~G~~--d~~lvgg~~~~~~~~~~~~~~~~~~l~~~~--~~~pf~~~~~g~~~geGAaa 239 (421)
T cd00833 164 LTVDTACSSSLVALHLACQSLRSGEC--DLALVGGVNLILSPDMFVGFSKAGMLSPDG--RCRPFDADADGYVRGEGVGV 239 (421)
T ss_pred eeeccHhHHHHHHHHHHHHHHHcCCC--CeeEEeeeeccCCHHHHHHHhhCCCCCCCC--CCCCCCCCCCCeeeeceEEE
Confidence 99999999999999999999999977 99999999986321 00000 011111 013579999999
Q ss_pred EEecC
Q psy2407 175 MLISD 179 (245)
Q Consensus 175 ~ll~~ 179 (245)
+||++
T Consensus 240 lvL~~ 244 (421)
T cd00833 240 VVLKR 244 (421)
T ss_pred EEEee
Confidence 99986
No 86
>PTZ00455 3-ketoacyl-CoA thiolase; Provisional
Probab=99.26 E-value=4.1e-11 Score=110.26 Aligned_cols=99 Identities=16% Similarity=0.154 Sum_probs=84.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCC--cCEEEEEeccCCC--CCCcHHHHHHHHcCCC------CCcceeeecCcchh
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNS--IELIITCSESGID--FGKSMSTYIHHYLGLN------RNCRLFELKQACYS 116 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~d--Id~li~~t~~~~~--~~p~~a~~l~~~LGl~------~~~~~~dv~~~C~~ 116 (245)
.+.+..+|+.+|+++||+++ |++++| ||.+++++..+.. ..+.++..++..+|++ ..++++.|+++|+|
T Consensus 44 ~~~s~~eL~~~a~~~al~~a-gl~~~d~~ID~vi~G~~~~~~~~~~~~~a~~~~~~~gl~~~~~gl~~~p~~~V~~~caS 122 (438)
T PTZ00455 44 ENKTLEELLATAIQGTLENT-GLDGKAALVDKVVVGNFLGELFSSQGHLGPAAVGSLGQSGASNALLYKPAMRVEGACAS 122 (438)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHCCcCEEEEEeccccccccccchHHHHHHhccCcccccccCCCceeEEECcCHH
Confidence 46788999999999999997 999999 9999998764322 2356677777666554 46899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCeEEEEEeccccc
Q psy2407 117 CTAGLQMAINFILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 117 ~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~ 148 (245)
++.++..|..+|++|.+ +.+||++.|+++.
T Consensus 123 G~~Ai~~A~~~I~sG~~--dvvlv~G~E~ms~ 152 (438)
T PTZ00455 123 GGLAVQSAWEALLAGTS--DIALVVGVEVQTT 152 (438)
T ss_pred HHHHHHHHHHHHHCCCC--CEEEEEEEeeccc
Confidence 99999999999999987 9999999998754
No 87
>PRK06157 acetyl-CoA acetyltransferase; Validated
Probab=99.25 E-value=4.2e-11 Score=109.14 Aligned_cols=98 Identities=12% Similarity=0.064 Sum_probs=83.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN 126 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~ 126 (245)
.+.+..+|+.+|+++||+++ |++++|||.+++++...++........+++.||++ ..+++.++++|++++.++..|..
T Consensus 23 ~~~~~~~L~~ea~~~AL~da-gl~~~dID~v~vg~~~~~~~~~~~~~~~a~~lGl~-~~~~~~v~~~c~sg~~ai~~A~~ 100 (398)
T PRK06157 23 WDAGAEDLMVEAFLEALADA-GIEPKDIDAAWFGTHYDEIGSGKSGTPLSRALRLP-NIPVTRVENFCATGSEAFRGAVY 100 (398)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeccccccccchhHHHHHHcCCC-CCCEEEEecccHHHHHHHHHHHH
Confidence 46778999999999999997 99999999999887644222222346788899995 58889999999999999999999
Q ss_pred HHhcCCCCCCeEEEEEeccccc
Q psy2407 127 FILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 127 ~i~sg~~~~~~aLVv~~e~~s~ 148 (245)
.|++|.+ +.+||+++|+++.
T Consensus 101 ~I~sG~~--d~vlv~G~e~~s~ 120 (398)
T PRK06157 101 AVASGAY--DIALALGVEKLKD 120 (398)
T ss_pred HHHCCCC--CEEEEEEEeeccc
Confidence 9999977 9999999998754
No 88
>PRK06158 thiolase; Provisional
Probab=99.25 E-value=3.2e-11 Score=109.43 Aligned_cols=92 Identities=16% Similarity=0.103 Sum_probs=78.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN 126 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~ 126 (245)
++++..+|+.+|+++||+++ |++++|||.+++++.. +..| ...+++.||++ ..++++++.+|+++..+|..|..
T Consensus 24 ~~~t~~eL~~eA~~~Al~dA-gl~~~dID~iv~~~~~--~~~~--~~~la~~lGl~-~~~~~~~~~g~~s~~~al~~A~~ 97 (384)
T PRK06158 24 PGLSAMELLAQAAHRALADA-GLTMADVDGLFTASPD--DALW--GLSVAEYLGIR-PRFVDGTMIGGSSFLAHLLPAAL 97 (384)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEecCC--CCCc--HHHHHHHcCCC-CeeeccccCccHHHHHHHHHHHH
Confidence 57899999999999999997 9999999999987643 3334 35799999994 67888999999999999999999
Q ss_pred HHhcCCCCCCeEEEE-Eeccc
Q psy2407 127 FILSKVSPGAKALVI-ATDIS 146 (245)
Q Consensus 127 ~i~sg~~~~~~aLVv-~~e~~ 146 (245)
+|++|.+ ++|||+ +.++.
T Consensus 98 ~I~sG~~--d~vLV~~g~~~~ 116 (384)
T PRK06158 98 ALEAGLC--DVALICYGSNQR 116 (384)
T ss_pred HHHcCCC--CEEEEeeccccc
Confidence 9999987 999998 44443
No 89
>PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.25 E-value=2.6e-10 Score=104.84 Aligned_cols=169 Identities=15% Similarity=0.066 Sum_probs=105.7
Q ss_pred ceeEEeEEeEecCCceecHHHHHHHc--CCC---h-HH-----Hh-hc-cceeeeecC-----CCCCHHHHHHHHHHHHH
Q psy2407 2 IKVGIEAINLYGGSVFIDVIELAKYR--KLD---T-VR-----FE-NL-LMQQKSVSL-----PYEDPVSFAINAAAPLI 63 (245)
Q Consensus 2 ~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~---~-~~-----~~-~~-Gi~~r~~~~-----~~e~~~~la~~Aa~~aL 63 (245)
|+|.|.|+|...|--. +.+++.+.+ |.+ + .. +. +. |... +.. .......|+..|+++||
T Consensus 11 ~~VvITG~G~vs~~G~-~~~~~~~~L~~G~s~i~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~aa~~Al 87 (425)
T PRK06501 11 PIVAVTGMGVVTSLGQ-GKADNWAALTAGESGIHTITRFPTEGLRTRIAGTVD--FLPESPFGASALSEALARLAAEEAL 87 (425)
T ss_pred cCEEEEeeeEECCCCC-CHHHHHHHHHcCCCceEcCCcccccCCCCceEEEEe--ecccccccccCHHHHHHHHHHHHHH
Confidence 3599999999999864 556555432 211 0 00 10 11 1100 100 01124568899999999
Q ss_pred HhcCCCCcCCcC------------------EEEEEec---------------cCCC-------CCCcHHHHHHHHcCCCC
Q psy2407 64 DNLSNIDKNSIE------------------LIITCSE---------------SGID-------FGKSMSTYIHHYLGLNR 103 (245)
Q Consensus 64 ~~a~g~~~~dId------------------~li~~t~---------------~~~~-------~~p~~a~~l~~~LGl~~ 103 (245)
+++ |++..+++ .++.++. .+.. ..|+.+..|+..+|++
T Consensus 88 ~dA-gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~gl~- 165 (425)
T PRK06501 88 AQA-GIGKGDFPGPLFLAAPPVELEWPARFALAAAVGDNDAPSYDRLLRAARGGRFDALHERFQFGSIADRLADRFGTR- 165 (425)
T ss_pred HHc-CCCccccccceeeccccccCCCCceEEEEEecCCccHHHHHHHHhhcCcccCChhhhhhcccHHHHHHHHHhCCC-
Confidence 997 98644322 1112111 1111 3456788999999993
Q ss_pred CcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecc---------------ccccccCccccccccccc--ccc
Q psy2407 104 NCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDI---------------SRFFVTEDKNELTMEWAF--FEP 166 (245)
Q Consensus 104 ~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~---------------~s~~~~~~~~~~~~~~~~--~~~ 166 (245)
.++++++.+|+|++.||..|..+|++|.+ +.+||+++|. .+...++.+ .+..++.. ...
T Consensus 166 -G~~~~i~~aCaS~~~Al~~A~~~I~~G~~--d~vlvgG~d~~~~~~~~~~~~~~~~ls~~~~~~~-~~~rpfd~~r~G~ 241 (425)
T PRK06501 166 -GLPISLSTACASGATAIQLGVEAIRRGET--DRALCIATDGSVSAEALIRFSLLSALSTQNDPPE-KASKPFSKDRDGF 241 (425)
T ss_pred -CCceeecCccHHHHHHHHHHHHHHHcCCC--CEEEEeeecccCCHHHHHHHHHhhccccCCCCCC-cccCCCCCCCCCe
Confidence 57899999999999999999999999977 9999999994 222111100 01111111 136
Q ss_pred cccceeEEEEecC
Q psy2407 167 SGGAGAVAMLISD 179 (245)
Q Consensus 167 ~~GDGAaA~ll~~ 179 (245)
++||||+++||++
T Consensus 242 v~GEGaaalVLe~ 254 (425)
T PRK06501 242 VMAEGAGALVLES 254 (425)
T ss_pred eeeccEEEEEECc
Confidence 7999999999986
No 90
>PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.22 E-value=1.2e-09 Score=99.95 Aligned_cols=173 Identities=12% Similarity=0.052 Sum_probs=111.0
Q ss_pred CceeEEeEEeEecCCceecHHHHHHHc--CCC---h-HHHh------h-cc-cee---eeecCC-----CCCHHHHHHHH
Q psy2407 1 MIKVGIEAINLYGGSVFIDVIELAKYR--KLD---T-VRFE------N-LL-MQQ---KSVSLP-----YEDPVSFAINA 58 (245)
Q Consensus 1 m~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~---~-~~~~------~-~G-i~~---r~~~~~-----~e~~~~la~~A 58 (245)
|+.|.|.|+|...|--. +.+++.+.+ |.+ + .++. . .| +.. ..+..+ -.....|+.+|
T Consensus 1 m~~v~ItG~g~~~p~g~-~~~~~w~~l~~g~~~~~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~a 79 (411)
T PRK07314 1 KRRVVVTGLGAVSPLGN-DVESTWKNLLAGKSGIGPITHFDTSDLAVKIAGEVKDFNPDDYMSRKEARRMDRFIQYGIAA 79 (411)
T ss_pred CCcEEEEcceEECCCcC-CHHHHHHHHHhCCCcEEECCcccccCCCccEEEEeCCcChhhcCCHHHhhcCCHHHHHHHHH
Confidence 78899999999999864 566655432 111 0 0000 0 01 100 000000 02346799999
Q ss_pred HHHHHHhcCCCCcCCcC----EEEEEeccCC---------------------C----CC-CcHHHHHHHHcCCCCCccee
Q psy2407 59 AAPLIDNLSNIDKNSIE----LIITCSESGI---------------------D----FG-KSMSTYIHHYLGLNRNCRLF 108 (245)
Q Consensus 59 a~~aL~~a~g~~~~dId----~li~~t~~~~---------------------~----~~-p~~a~~l~~~LGl~~~~~~~ 108 (245)
+++||+++ |++++++| .+++++.... . .. ...+.++...+|+. -+.+
T Consensus 80 a~~Al~dA-Gl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~--Gp~~ 156 (411)
T PRK07314 80 AKQAVEDA-GLEITEENADRIGVIIGSGIGGLETIEEQHITLLEKGPRRVSPFFVPMAIINMAAGHVSIRYGAK--GPNH 156 (411)
T ss_pred HHHHHHHc-CCCcccCCcccEEEEEecCcCChHHHHHHHHHHHhcCccccChhhhhhhcchHHHHHHHHHhCCC--Cccc
Confidence 99999997 99998888 4666654221 0 11 12456788999994 4778
Q ss_pred eecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccc-------------Ccccc-ccccccc--cccccccee
Q psy2407 109 ELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVT-------------EDKNE-LTMEWAF--FEPSGGAGA 172 (245)
Q Consensus 109 dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~-------------~~~~~-~~~~~~~--~~~~~GDGA 172 (245)
.+..+|+|++.+|..|..+|++|.+ +.+||.++|....... ..++. ...++.. ...+.||||
T Consensus 157 tv~~acaSgl~Al~~A~~~I~~G~~--d~vlvgg~~~~~~~~~~~~~~~~~~ls~~~~~p~~~~~pfd~~~dG~~~geGA 234 (411)
T PRK07314 157 SIVTACATGAHAIGDAARLIAYGDA--DVMVAGGAEAAITPLGIAGFAAARALSTRNDDPERASRPFDKDRDGFVMGEGA 234 (411)
T ss_pred cchhhhHHHHHHHHHHHHHHhcCCC--CEEEEeeecccCCHHHHHHHHHhccccCCCCCCCcCcCCCcCCCCCEeEEceE
Confidence 8889999999999999999999977 9999999997532110 00000 0111111 135689999
Q ss_pred EEEEecC
Q psy2407 173 VAMLISD 179 (245)
Q Consensus 173 aA~ll~~ 179 (245)
+++||++
T Consensus 235 aavvL~~ 241 (411)
T PRK07314 235 GILVLEE 241 (411)
T ss_pred EEEEEee
Confidence 9999986
No 91
>PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed
Probab=99.21 E-value=7.9e-11 Score=106.93 Aligned_cols=99 Identities=13% Similarity=0.090 Sum_probs=86.4
Q ss_pred CCCCHHHHHHHHHHHHHHh-cCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDN-LSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA 124 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~-a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A 124 (245)
.+.+..+|+.+++++||++ + |+++++||.+++++..+... .+..+..+...+|++..++++.|+++|+|++.++..|
T Consensus 23 ~~~~~~~L~~~~~~~al~~~a-gl~~~~Id~vi~g~~~~~~~~g~~~ar~~~~~~Gl~~~~p~~~V~~~caSG~~Ai~~A 101 (387)
T PRK08947 23 RNVRAEDLSAHLMRSLLARNP-ALDPAEIDDIIWGCVQQTLEQGFNIARNAALLAGIPHSVPAVTVNRLCGSSMQALHDA 101 (387)
T ss_pred CCCCHHHHHHHHHHHHHHhcc-CcChHHhCeEEEEeccccccccccHHHHHHHHcCCCCCCcceeeechhHHHHHHHHHH
Confidence 4677899999999999995 6 99999999999997653222 2556778889999965699999999999999999999
Q ss_pred HHHHhcCCCCCCeEEEEEeccccc
Q psy2407 125 INFILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 125 ~~~i~sg~~~~~~aLVv~~e~~s~ 148 (245)
..+|++|.+ +.+|+++.|++|.
T Consensus 102 ~~~I~sG~~--d~vlv~G~E~ms~ 123 (387)
T PRK08947 102 ARAIMTGDG--DVFLIGGVEHMGH 123 (387)
T ss_pred HHHHHCCCC--CEEEEcccccccc
Confidence 999999977 9999999999875
No 92
>PRK09268 acetyl-CoA acetyltransferase; Provisional
Probab=99.19 E-value=1.4e-10 Score=106.44 Aligned_cols=100 Identities=11% Similarity=0.051 Sum_probs=85.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN 126 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~ 126 (245)
.+.+..+|+.+|++++|+++ |++++|||.+++++..+....+..+..+.-..|++...+++.|+++|++++.++..|..
T Consensus 27 ~~~~~~eL~~~a~~~al~~a-gl~~~~Id~vv~G~~~~~~~~~~~~r~~~l~~gl~~~~p~~~V~~~CaSG~~ai~~A~~ 105 (427)
T PRK09268 27 ADASNQDMLTAALDGLVDRF-GLQGERLGEVVAGAVLKHSRDFNLTRECVLGSALSPYTPAYDLQQACGTGLEAAILVAN 105 (427)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEecccCCccccHHHHHHHHcCCCCCCceeeeechhhHHHHHHHHHHH
Confidence 46789999999999999996 99999999999997654222245677766666775568999999999999999999999
Q ss_pred HHhcCCCCCCeEEEEEecccccc
Q psy2407 127 FILSKVSPGAKALVIATDISRFF 149 (245)
Q Consensus 127 ~i~sg~~~~~~aLVv~~e~~s~~ 149 (245)
+|++|.+ +.+|+++.|++|..
T Consensus 106 ~I~sG~~--d~vlvgG~E~ms~~ 126 (427)
T PRK09268 106 KIALGQI--DSGIAGGVDTTSDA 126 (427)
T ss_pred HHHCCCC--CEEEEeeEEccCCC
Confidence 9999977 99999999999854
No 93
>TIGR02445 fadA fatty oxidation complex, beta subunit FadA. This subunit of the FadBA complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit. This protein is almost always located adjacent to FadB (TIGR02437). The FadBA complex is the major complex active for beta-oxidation of fatty acids in E. coli.
Probab=99.17 E-value=1.2e-10 Score=105.68 Aligned_cols=100 Identities=12% Similarity=0.074 Sum_probs=85.3
Q ss_pred CCCCHHHHHHHHHHHHHHh-cCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDN-LSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA 124 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~-a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A 124 (245)
.+.++.+|+.+|++++|++ + |+++++||.+++++..+... .+.++..+....|++..++++.|+++|+|++.++..|
T Consensus 21 ~~~~~~~L~~~a~~~al~~~a-gl~~~~Id~v~~G~~~~~~~~g~~~ar~~~~~~g~~~~~p~~tV~~~CaSG~~Ai~~A 99 (385)
T TIGR02445 21 RNTRAEDLSAHLMSKLLARNP-KVDPAEVEDIYWGCVQQTLEQGFNIARNAALLAQIPHTSAAVTVNRLCGSSMQALHDA 99 (385)
T ss_pred CCCCHHHHHHHHHHHHHHhcc-CCCHHHcCEEEEecccccccccchHHHHHHHHCCCCCCcchhhhhhhhHHHHHHHHHH
Confidence 4678899999999999995 5 99999999999997653221 2456777777889976699999999999999999999
Q ss_pred HHHHhcCCCCCCeEEEEEecccccc
Q psy2407 125 INFILSKVSPGAKALVIATDISRFF 149 (245)
Q Consensus 125 ~~~i~sg~~~~~~aLVv~~e~~s~~ 149 (245)
...|++|.+ +.+|+++.|++|..
T Consensus 100 a~~I~sG~~--d~vlagG~E~ms~~ 122 (385)
T TIGR02445 100 ARAIMTGDA--DVCLVGGVEHMGHV 122 (385)
T ss_pred HHHHHCCCC--CEEEEeeehhcccC
Confidence 999999977 99999999998753
No 94
>PRK08256 lipid-transfer protein; Provisional
Probab=99.17 E-value=1.7e-10 Score=105.02 Aligned_cols=93 Identities=14% Similarity=0.142 Sum_probs=80.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHH
Q psy2407 48 YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINF 127 (245)
Q Consensus 48 ~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~ 127 (245)
+.+..+|+.+|+++||+++ |++++|||.+++++..++... ...++..+|+ .++++++++.+|+|++.++..|..+
T Consensus 19 ~~~~~~La~~A~~~Al~dA-Gl~~~dID~~~~g~~~~~~~~---~~~~~~~lGl-~~~~~~~v~~~caSg~~ai~~A~~~ 93 (391)
T PRK08256 19 SWDYPDMAAEAGRAALADA-GIDYDAVQQAYVGYVYGDSTS---GQRALYEVGM-TGIPIVNVNNNCSTGSTALFLARQA 93 (391)
T ss_pred CCCHHHHHHHHHHHHHHHc-CCChHHCCeeEEEEEeCCcch---hHHHHHHcCC-CCCCCcccccccHHHHHHHHHHHHH
Confidence 5778999999999999997 999999999998876653322 2346778999 4678899999999999999999999
Q ss_pred HhcCCCCCCeEEEEEecccc
Q psy2407 128 ILSKVSPGAKALVIATDISR 147 (245)
Q Consensus 128 i~sg~~~~~~aLVv~~e~~s 147 (245)
|++|.+ +++||++.|+++
T Consensus 94 I~sG~~--d~vLv~g~e~~s 111 (391)
T PRK08256 94 VRSGAA--DCALALGFEQMQ 111 (391)
T ss_pred HHCCCC--CEEEEEEEeecc
Confidence 999987 999999999875
No 95
>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.
Probab=99.15 E-value=1.1e-09 Score=99.91 Aligned_cols=127 Identities=13% Similarity=0.100 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCcCC-cC----EEEEEeccCC----------------------CCC--CcHHHHHHHHc
Q psy2407 49 EDPVSFAINAAAPLIDNLSNIDKNS-IE----LIITCSESGI----------------------DFG--KSMSTYIHHYL 99 (245)
Q Consensus 49 e~~~~la~~Aa~~aL~~a~g~~~~d-Id----~li~~t~~~~----------------------~~~--p~~a~~l~~~L 99 (245)
.....|+..|+++||+++ |+++++ ++ .+++++..+. ... ...+..|+..+
T Consensus 70 ~~~~~l~~~aa~~Al~dA-Gl~~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~ 148 (407)
T cd00828 70 DRTTLLALVATEEALADA-GITDPYEVHPSEVGVVVGSGMGGLRFLRRGGKLDARAVNPYVSPKWMLSPNTVAGWVNILL 148 (407)
T ss_pred CHHHHHHHHHHHHHHHhC-CCCccccCCccCeEEEEeeccCCHHHHHHHHHHHhhccCCcccchhccccchHHHHHHHHh
Confidence 345689999999999997 998765 33 3444543211 111 45678899999
Q ss_pred CCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc----------ccCcc--c-cccccccc--c
Q psy2407 100 GLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF----------VTEDK--N-ELTMEWAF--F 164 (245)
Q Consensus 100 Gl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~----------~~~~~--~-~~~~~~~~--~ 164 (245)
|+. +-+.+.+..+|+|++.||..|..+|++|.+ +.+||+++|..+.. +.... + ....++.. .
T Consensus 149 gl~-~Gp~~tv~~aCaS~~~Al~~A~~~I~~G~~--d~~lvgg~d~~~~~~~~~f~~~~~ls~~~~~~~~~~~pfd~~~~ 225 (407)
T cd00828 149 LSS-HGPIKTPVGACATALEALDLAVEAIRSGKA--DIVVVGGVEDPLEEGLSGFANMGALSTAEEEPEEMSRPFDETRD 225 (407)
T ss_pred CcC-CCCCcCcccHHHHHHHHHHHHHHHHHcCCC--CEEEEccccccChHHHHHHHHcCCCCCCCCCCCcccCCCcCCCC
Confidence 993 457899999999999999999999999977 99999999987510 00000 0 01111111 1
Q ss_pred cccccceeEEEEecC
Q psy2407 165 EPSGGAGAVAMLISD 179 (245)
Q Consensus 165 ~~~~GDGAaA~ll~~ 179 (245)
..++||||+++||++
T Consensus 226 G~~~gEGAaalvLe~ 240 (407)
T cd00828 226 GFVEAEGAGVLVLER 240 (407)
T ss_pred cEEeecceEEEEEee
Confidence 357999999999986
No 96
>PRK06365 acetyl-CoA acetyltransferase; Provisional
Probab=99.15 E-value=2.5e-10 Score=104.93 Aligned_cols=98 Identities=14% Similarity=0.051 Sum_probs=80.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHH-HHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMS-TYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI 125 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a-~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~ 125 (245)
++.+..+|+.+|+++||+++ |++++|||.+++++..........+ ..++..||++ ..+++.++++|+|+..++..|.
T Consensus 33 ~~~~~~eL~~eA~~~Al~da-gl~~~dID~vv~~~~~~~~~g~~~~~~~~~~~lGl~-~~~~~~v~~~~aSg~~ai~~A~ 110 (430)
T PRK06365 33 PYMDFRERVKKAFDYAMNDA-GLTLADIDGSVASYFSDHFQRQLLAGIMVQDYLGLV-PKPSKRIEGGGATGGLAFQAGY 110 (430)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHcCEEEEecccccccccchhhHHHHHhcCCC-CCceEEEeCCcHHHHHHHHHHH
Confidence 35677899999999999997 9999999998876543222222333 3467999995 5899999999999999999999
Q ss_pred HHHhcCCCCCCeEEEEEeccccc
Q psy2407 126 NFILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 126 ~~i~sg~~~~~~aLVv~~e~~s~ 148 (245)
..|++|.+ +.|||++.|+++.
T Consensus 111 ~~I~sG~~--~~vLv~G~e~~s~ 131 (430)
T PRK06365 111 EEIASGRM--DCVAVYGFETMSH 131 (430)
T ss_pred HHHHcCCC--CEEEEEEeeeccc
Confidence 99999977 9999999998754
No 97
>PRK06025 acetyl-CoA acetyltransferase; Provisional
Probab=99.15 E-value=3.5e-10 Score=103.01 Aligned_cols=102 Identities=15% Similarity=0.185 Sum_probs=92.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHH
Q psy2407 45 SLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQM 123 (245)
Q Consensus 45 ~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~ 123 (245)
...+.++.+|+..+++.+|++. ++++++||.||+++..+... .+++++.++-..||+..++++.|+..|+|++.++.+
T Consensus 23 ~l~~~~~~~L~~~~~~~~l~r~-~i~~~~id~vi~G~~~~~g~~g~n~aR~~al~aglp~~vp~~tvnr~C~Sgl~ai~~ 101 (417)
T PRK06025 23 ALAHLHPQHLAATVLKALAERN-GLNTADVDDIIWSTSSQRGKQGGDLGRMAALDAGYDIKASGVTLDRFCGGGITSVNL 101 (417)
T ss_pred cCCCCCHHHHHHHHHHHHHHhc-CCCHHHCCEEEEEcCCCcCcccCcHHHHHHHhCCCCCCCCeeeeccccchHHHHHHH
Confidence 3457899999999999999996 99999999999998866433 478999999999998889999999999999999999
Q ss_pred HHHHHhcCCCCCCeEEEEEecccccc
Q psy2407 124 AINFILSKVSPGAKALVIATDISRFF 149 (245)
Q Consensus 124 A~~~i~sg~~~~~~aLVv~~e~~s~~ 149 (245)
|...|++|.. +.+|+.+.|.+|..
T Consensus 102 aa~~I~~G~~--~~~laGG~EsmS~~ 125 (417)
T PRK06025 102 AAAQIMSGME--DLVIAGGTEMMSYT 125 (417)
T ss_pred HHHHHHcCCC--CEEEEeeeeccCCC
Confidence 9999999976 99999999999864
No 98
>TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II. FabB sequences should fall well below the noise cutoff of this model.
Probab=99.11 E-value=2e-09 Score=98.12 Aligned_cols=124 Identities=15% Similarity=0.138 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCcCE----EEEEeccCCC---------------------C----C-CcHHHHHHHHcC
Q psy2407 51 PVSFAINAAAPLIDNLSNIDKNSIEL----IITCSESGID---------------------F----G-KSMSTYIHHYLG 100 (245)
Q Consensus 51 ~~~la~~Aa~~aL~~a~g~~~~dId~----li~~t~~~~~---------------------~----~-p~~a~~l~~~LG 100 (245)
...|+.+|+++||+++ |+++++||. +++++..+.. . . ...+..+...+|
T Consensus 71 ~~~l~~~aa~~Al~dA-gl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~g 149 (407)
T TIGR03150 71 FIQYALAAAKEAVEDS-GLDIEEEDAERVGVIIGSGIGGLETIEEQHIVLLEKGPRRVSPFFIPMSIINMAAGQISIRYG 149 (407)
T ss_pred HHHHHHHHHHHHHHhc-CCCcccCCccceEEEEecCCCchHHHHHHHHHHHhcCccccChhhhhcccccHHHHHHHHHhC
Confidence 3679999999999997 999998886 6666532210 0 1 124567888899
Q ss_pred CCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc-----------c-Ccc-cc-ccccccc--c
Q psy2407 101 LNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFV-----------T-EDK-NE-LTMEWAF--F 164 (245)
Q Consensus 101 l~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~-----------~-~~~-~~-~~~~~~~--~ 164 (245)
+. .+.+.+..+|+|++.||..|..+|++|.+ +.+||+++|...... . ..+ +. ...++.. .
T Consensus 150 l~--g~~~~v~~acaSg~~Al~~A~~~I~~G~~--d~~lvgg~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~pfd~~~~ 225 (407)
T TIGR03150 150 AK--GPNHAVVTACATGTHAIGDAFRLIQRGDA--DVMIAGGAEAAITPLGIAGFAAMKALSTRNDDPEKASRPFDKDRD 225 (407)
T ss_pred CC--CcccccccHHHHHHHHHHHHHHHHhcCCC--CEEEEecccCcCCHHHHHHHHHhCcccCCCCCCCcCCCCCcCCCC
Confidence 83 57788999999999999999999999977 999999999743210 0 000 00 0111111 1
Q ss_pred cccccceeEEEEecC
Q psy2407 165 EPSGGAGAVAMLISD 179 (245)
Q Consensus 165 ~~~~GDGAaA~ll~~ 179 (245)
..+.||||+|+||++
T Consensus 226 g~~~gEGAaalvL~~ 240 (407)
T TIGR03150 226 GFVMGEGAGVLVLEE 240 (407)
T ss_pred cEEEeceEEEEEEee
Confidence 356899999999986
No 99
>PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.09 E-value=7.4e-09 Score=93.86 Aligned_cols=164 Identities=9% Similarity=0.055 Sum_probs=105.1
Q ss_pred CceeEEeEEeEecCCceecHHHHHHHcCCChHHHhhcccee------------eeecCCCCCHHHHHHHHHHHHHHhcCC
Q psy2407 1 MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQ------------KSVSLPYEDPVSFAINAAAPLIDNLSN 68 (245)
Q Consensus 1 m~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~~~Gi~~------------r~~~~~~e~~~~la~~Aa~~aL~~a~g 68 (245)
|++|.|.|+|..-|--. .+++.+.+-.. +.||+. +.+.........++..|+++||+++ |
T Consensus 1 ~~rVvITG~G~vsp~G~--~~~~~~~l~~G-----~sgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Al~da-g 72 (381)
T PRK05952 1 MMKVVVTGIGLVSALGD--LEQSWQRLLQG-----KSGIKLHQPFPELPPLPLGLIGNQPSSLEDLTKTVVTAALKDA-G 72 (381)
T ss_pred CCeEEEEeeEEECcccC--HHHHHHHHHcC-----CCCeEeCCcccccccccceeeccccccccHHHHHHHHHHHHhc-C
Confidence 89999999999999986 55554432000 112211 0000000112347778999999997 9
Q ss_pred CCc--CCcCEEEEEeccCC--------------------C--------CCC-cHHHHHHHHcCCCCCcceeeecCcchhH
Q psy2407 69 IDK--NSIELIITCSESGI--------------------D--------FGK-SMSTYIHHYLGLNRNCRLFELKQACYSC 117 (245)
Q Consensus 69 ~~~--~dId~li~~t~~~~--------------------~--------~~p-~~a~~l~~~LGl~~~~~~~dv~~~C~~~ 117 (245)
+++ +++. ++++|..+. . .+| ..+..++..+|++ -+.+.+..+|+|+
T Consensus 73 l~~~~~~~G-v~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~~~~~--Gp~~ti~~aCasg 149 (381)
T PRK05952 73 LTPPLTDCG-VVIGSSRGCQGQWEKLARQMYQGDDSPDEELDLENWLDTLPHQAAIAAARQIGTQ--GPVLAPMAACATG 149 (381)
T ss_pred CCCCCCCEE-EEEeeCcchHHHHHHHHHHHhhcCCccccccCHHHHHHhcccHHHHHHHHHhCCC--CccccccchhHHH
Confidence 864 4454 445553221 0 011 3467788899994 3788899999999
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEEEecc-ccccc----c-----Cccccccccccc--ccccccceeEEEEecC
Q psy2407 118 TAGLQMAINFILSKVSPGAKALVIATDI-SRFFV----T-----EDKNELTMEWAF--FEPSGGAGAVAMLISD 179 (245)
Q Consensus 118 ~~aL~~A~~~i~sg~~~~~~aLVv~~e~-~s~~~----~-----~~~~~~~~~~~~--~~~~~GDGAaA~ll~~ 179 (245)
+.||..|..+|++|.+ +.+||.++|. .+... . ..+ ...|+.. ...++||||++++|++
T Consensus 150 ~~Ai~~A~~~i~~G~~--d~~lvgg~d~~~~~~~~~~~~~~~~ls~~--~~rPfd~~r~G~v~gEGaa~lvLe~ 219 (381)
T PRK05952 150 LWAIAQGVELIQTGQC--QRVIAGAVEAPITPLTLAGFQQMGALAKT--GAYPFDRQREGLVLGEGGAILVLES 219 (381)
T ss_pred HHHHHHHHHHHHcCCC--CEEEEccccccCCHHHHHHHHhcCCcCCC--CCCCCCCCCCCccccccEEEEEEee
Confidence 9999999999999977 9999999996 32210 0 001 0112111 1357999999999986
No 100
>PRK07801 acetyl-CoA acetyltransferase; Provisional
Probab=99.08 E-value=6.7e-10 Score=100.75 Aligned_cols=98 Identities=13% Similarity=0.142 Sum_probs=79.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCC-CCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407 48 YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGI-DFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN 126 (245)
Q Consensus 48 ~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~-~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~ 126 (245)
+.+..+|+.+|+++||+++ |++++|||.+++++.... ...+..+..+.-.+|++..++++.++++|++++.++..|.+
T Consensus 23 ~~~~~~L~~~a~~~al~da-gl~~~~ID~vv~g~~~~~~~~~~~~~~~~~l~~gl~~~~p~~~v~~acaSg~~Av~~Aa~ 101 (382)
T PRK07801 23 GVHPADLGAHVLKGLVDRT-GIDPAAVDDVIFGCVDTIGPQAGNIARTSWLAAGLPEEVPGVTVDRQCGSSQQAIHFAAQ 101 (382)
T ss_pred CCCHHHHHHHHHHHHHHHc-CCCHHHcCEEEEEeeccCCcccccHHHHHHHHcCCCCCCceeeecchhhhHHHHHHHHHH
Confidence 4688999999999999997 999999999998754211 11233444444467775457888999999999999999999
Q ss_pred HHhcCCCCCCeEEEEEeccccc
Q psy2407 127 FILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 127 ~i~sg~~~~~~aLVv~~e~~s~ 148 (245)
.|++|.+ +.+||++.|+++.
T Consensus 102 ~I~sG~~--d~vLv~G~e~ms~ 121 (382)
T PRK07801 102 AVMSGTQ--DLVVAGGVQNMSQ 121 (382)
T ss_pred HHHCCCC--CEEEEcchhhhcC
Confidence 9999977 9999999996643
No 101
>PRK08439 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.07 E-value=5.4e-09 Score=95.58 Aligned_cols=173 Identities=16% Similarity=0.145 Sum_probs=108.6
Q ss_pred CceeEEeEEeEecCCceecHHHHHHHc--CCC----hHHHh------hc-c-cee---eeecCC-----CCCHHHHHHHH
Q psy2407 1 MIKVGIEAINLYGGSVFIDVIELAKYR--KLD----TVRFE------NL-L-MQQ---KSVSLP-----YEDPVSFAINA 58 (245)
Q Consensus 1 m~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~----~~~~~------~~-G-i~~---r~~~~~-----~e~~~~la~~A 58 (245)
|++|.|.|+|...|--. +.+++.+.+ |.+ ...+. .. | +.. ..+..+ -.....|+..|
T Consensus 1 m~~v~ItG~g~vsp~G~-~~~~~~~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~A 79 (406)
T PRK08439 1 MKRVVVTGIGMINSLGL-NKESSFKAICNGECGIKKITLFDASDFPVQIAGEITDFDPTEVMDPKEVKKADRFIQLGLKA 79 (406)
T ss_pred CCCEEEEeeEEECCCcC-CHHHHHHHHHcCCCceEeCCCccccCCCCceeEEcCCcChhhcCCHHHHhhcCHHHHHHHHH
Confidence 67899999999999874 455554432 211 00000 00 1 110 000000 11246799999
Q ss_pred HHHHHHhcCCCCcCCcCE----EEEEeccCC---------------------C----CC-CcHHHHHHHHcCCCCCccee
Q psy2407 59 AAPLIDNLSNIDKNSIEL----IITCSESGI---------------------D----FG-KSMSTYIHHYLGLNRNCRLF 108 (245)
Q Consensus 59 a~~aL~~a~g~~~~dId~----li~~t~~~~---------------------~----~~-p~~a~~l~~~LGl~~~~~~~ 108 (245)
+++||+++ |+++++++. +++++.... + .. ...+..|...+|+. -+.+
T Consensus 80 a~~AL~dA-Gl~~~~~~~~r~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~--Gp~~ 156 (406)
T PRK08439 80 AREAMKDA-GFLPEELDAERFGVSSASGIGGLPNIEKNSIICFEKGPRKISPFFIPSALVNMLGGFISIEHGLK--GPNL 156 (406)
T ss_pred HHHHHHHc-CCCcccCCCCCEEEEEecCCccHHHHHHHHHHHHhcCccccCchhcccccccHHHHHHHHHhCCC--CCcc
Confidence 99999997 998877653 444442210 0 11 14677889999994 4678
Q ss_pred eecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc-----------cc--Ccccc-ccccccc--cccccccee
Q psy2407 109 ELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF-----------VT--EDKNE-LTMEWAF--FEPSGGAGA 172 (245)
Q Consensus 109 dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~-----------~~--~~~~~-~~~~~~~--~~~~~GDGA 172 (245)
.+..+|++++.||..|..+|++|.+ +.+||+++|..... +. ..++. ...++.. ...++|+||
T Consensus 157 ~~~~acas~~~Al~~A~~~i~~G~~--d~~lv~g~d~~l~~~~~~~f~~~~~ls~~~~~p~~~~rpfd~~~~G~v~gEGa 234 (406)
T PRK08439 157 SSVTACAAGTHAIIEAVKTIMLGGA--DKMLVVGAESAICPVGIGGFAAMKALSTRNDDPKKASRPFDKDRDGFVMGEGA 234 (406)
T ss_pred ccccHhHHHHHHHHHHHHHHHcCCC--CEEEEecchhccCHHHHHHHHHhCccccCCCCCccCcCCccCCCCcEEeeCce
Confidence 8889999999999999999999977 99999999963111 00 00000 0111111 135789999
Q ss_pred EEEEecC
Q psy2407 173 VAMLISD 179 (245)
Q Consensus 173 aA~ll~~ 179 (245)
++++|++
T Consensus 235 ~~lvLe~ 241 (406)
T PRK08439 235 GALVLEE 241 (406)
T ss_pred EEEEEcc
Confidence 9999986
No 102
>PF00109 ketoacyl-synt: Beta-ketoacyl synthase, N-terminal domain; InterPro: IPR014030 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the N-terminal domain of beta-ketoacyl-ACP synthases. ; PDB: 1J3N_B 3KZU_C 1W0I_A 2IX4_A 1F91_B 2BYZ_D 2AQB_C 2BZ3_C 1H4F_C 2VB9_B ....
Probab=99.06 E-value=3.2e-09 Score=90.55 Aligned_cols=124 Identities=24% Similarity=0.208 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCc-----CEEEEEeccCCC-------------------C----CC-cHHHHHHHHcCC
Q psy2407 51 PVSFAINAAAPLIDNLSNIDKNSI-----ELIITCSESGID-------------------F----GK-SMSTYIHHYLGL 101 (245)
Q Consensus 51 ~~~la~~Aa~~aL~~a~g~~~~dI-----d~li~~t~~~~~-------------------~----~p-~~a~~l~~~LGl 101 (245)
...|+..|+.+||+++ |+++.++ -.|++++..+++ . .| ..+..|+..+|+
T Consensus 87 ~~~~~l~aa~~Al~dA-g~~~~~~~~~~r~gv~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~gl 165 (254)
T PF00109_consen 87 QSRLALAAAREALEDA-GLDPDDLDGERRVGVFVGSSSGDYEFYRALDEDGETPRDVSPWFVPNTLPNSAAGRIAILFGL 165 (254)
T ss_dssp HHHHHHHHHHHHHHHH-TSTGGGHTGGGTEEEEEEESSSHHHHHHHHHHHTTCGGGSHTTHHHHHSTTHHHHHHHHHHTB
T ss_pred hhhHHHHHhhhhcccc-cccccccccccceeeccccccccccccccccccccccccccccccCcccccccccchhhhcCC
Confidence 5679999999999997 9988532 224455554421 0 11 357788999999
Q ss_pred CCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEec-cccccc----------cCcccccccccccccccccc
Q psy2407 102 NRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATD-ISRFFV----------TEDKNELTMEWAFFEPSGGA 170 (245)
Q Consensus 102 ~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e-~~s~~~----------~~~~~~~~~~~~~~~~~~GD 170 (245)
+ -+++.+..+|+|++.||..|..+|++|.+ +.+||.++| ..+... ..+++.+.....-...++|+
T Consensus 166 ~--G~~~tv~~acaSgl~Al~~A~~~I~~G~~--d~~lvgg~d~~~~~~~~~~~~~~~~~s~~~~~~pf~~~~~G~v~gE 241 (254)
T PF00109_consen 166 R--GPSYTVSTACASGLAALEAAYRAIRSGEA--DVALVGGVDAPLSPFILAGFSALGALSADGPCRPFDPFADGFVLGE 241 (254)
T ss_dssp ---SSEEEEE-GGGHHHHHHHHHHHHHHTTSS--SEEEEEEEE--SSHHHHHHHHHTTBB-TTSGGGSTBTTB-SB-BB-
T ss_pred C--Cccccccccccccccccchhccccccccc--cccccccccccccccccccccccccccccccccccCCCCCCEEEEC
Confidence 4 47788999999999999999999999977 999999999 433321 11111111111112468999
Q ss_pred eeEEEEecC
Q psy2407 171 GAVAMLISD 179 (245)
Q Consensus 171 GAaA~ll~~ 179 (245)
||+++||++
T Consensus 242 Ga~~~vLe~ 250 (254)
T PF00109_consen 242 GAGALVLER 250 (254)
T ss_dssp EEEEEEEEE
T ss_pred ceEEEEEEE
Confidence 999999975
No 103
>PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated
Probab=99.06 E-value=4.8e-09 Score=96.03 Aligned_cols=124 Identities=13% Similarity=0.126 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHhcCCCC---cCCcCEEEEEecc---------------CCCCCC---------cHHHHHHHHcCCCC
Q psy2407 51 PVSFAINAAAPLIDNLSNID---KNSIELIITCSES---------------GIDFGK---------SMSTYIHHYLGLNR 103 (245)
Q Consensus 51 ~~~la~~Aa~~aL~~a~g~~---~~dId~li~~t~~---------------~~~~~p---------~~a~~l~~~LGl~~ 103 (245)
...|+..|+++||+++ |++ +++|+.++.++.. +.+..| ..+..|+..||+.
T Consensus 80 ~~~lal~Aa~eAl~dA-gl~~~~~~riGvivG~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~- 157 (410)
T PRK07103 80 SAQAALAAAREAWRDA-ALGPVDPDRIGLVVGGSNLQQREQALVHETYRDRPAFLRPSYGLSFMDTDLVGLCSEQFGIR- 157 (410)
T ss_pred HHHHHHHHHHHHHHhc-CcCCCCCCCEEEEEccCCcchHHHHHHHHHhccCccccChhhhhhhcchHHHHHHHHHhCCC-
Confidence 4579999999999997 986 4567666543321 111112 2566788999994
Q ss_pred CcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccc-ccc----------cc----Ccccc-cccccc--ccc
Q psy2407 104 NCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDIS-RFF----------VT----EDKNE-LTMEWA--FFE 165 (245)
Q Consensus 104 ~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~-s~~----------~~----~~~~~-~~~~~~--~~~ 165 (245)
.+++.+..+|+|++.||..|..+|++|.+ +.+||+++|.. +.. +. ..++. ...++. ...
T Consensus 158 -G~~~tv~~acas~~~Al~~A~~~I~~G~~--d~~lv~g~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~rPfd~~~dG 234 (410)
T PRK07103 158 -GEGFTVGGASASGQLAVIQAARLVQSGSV--DACIAVGALMDLSYWECQALRSLGAMGSDRFADEPEAACRPFDQDRDG 234 (410)
T ss_pred -CCcccccchhHHHHHHHHHHHHHHHcCCC--CEEEEecccccCCHHHHHHHHHccccccCccCCCcccCcCCCCCCCCC
Confidence 47888999999999999999999999977 99999998642 110 00 00000 011111 013
Q ss_pred ccccceeEEEEecC
Q psy2407 166 PSGGAGAVAMLISD 179 (245)
Q Consensus 166 ~~~GDGAaA~ll~~ 179 (245)
.+.||||++++|++
T Consensus 235 ~v~gEGaaalvLe~ 248 (410)
T PRK07103 235 FIYGEACGAVVLES 248 (410)
T ss_pred eeEeeeEEEEEEcc
Confidence 57899999999986
No 104
>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=98.99 E-value=4.1e-08 Score=89.41 Aligned_cols=88 Identities=17% Similarity=0.218 Sum_probs=64.6
Q ss_pred CcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc----c---Cccccccccc
Q psy2407 89 KSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFV----T---EDKNELTMEW 161 (245)
Q Consensus 89 p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~----~---~~~~~~~~~~ 161 (245)
+..+..|+..||++ -+++.+..+|++++.||..|..+|++|.+ +.+||+++|..+... . .-......|+
T Consensus 137 ~~~a~~ia~~lgl~--Gp~~~i~~acas~~~Al~~A~~~I~~G~~--d~vlvgg~d~~~~~~~~~~~~~~~l~~~~~~Pf 212 (392)
T PRK09185 137 GSLADFLRAYLGLS--GPAYTISTACSSSAKVFASARRLLEAGLC--DAAIVGGVDSLCRLTLNGFNSLESLSPQPCRPF 212 (392)
T ss_pred cHHHHHHHHHhCCC--CCcccccChhHHHHHHHHHHHHHHHcCCC--CEEEEeeccccChHHHHHHHhccccCCCccCCC
Confidence 35788899999994 37889999999999999999999999977 999999999654321 0 0000001121
Q ss_pred cc--ccccccceeEEEEecCC
Q psy2407 162 AF--FEPSGGAGAVAMLISDK 180 (245)
Q Consensus 162 ~~--~~~~~GDGAaA~ll~~~ 180 (245)
.. ...++||||+++||++.
T Consensus 213 d~~~~G~~~gEGaa~vVLe~~ 233 (392)
T PRK09185 213 SANRDGINIGEAAAFFLLERE 233 (392)
T ss_pred cCCCCccceeceEEEEEEEEc
Confidence 11 13579999999999875
No 105
>PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=98.96 E-value=1.7e-08 Score=92.76 Aligned_cols=124 Identities=19% Similarity=0.097 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCc-C----EEEEEeccCCC---------------------CCC-----cHHHHHHHHc
Q psy2407 51 PVSFAINAAAPLIDNLSNIDKNSI-E----LIITCSESGID---------------------FGK-----SMSTYIHHYL 99 (245)
Q Consensus 51 ~~~la~~Aa~~aL~~a~g~~~~dI-d----~li~~t~~~~~---------------------~~p-----~~a~~l~~~L 99 (245)
...|+..|+++||+++ |++++++ + .+++++..+.. ..+ ..+..|...+
T Consensus 82 ~~~l~~~aa~~Al~dA-gl~~~~~~~~~~~Gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~ 160 (424)
T PRK06333 82 FILFAMAAAKEALAQA-GWDPDTLEDRERTATIIGSGVGGFPAIAEAVRTLDSRGPRRLSPFTIPSFLTNMAAGHVSIRY 160 (424)
T ss_pred HHHHHHHHHHHHHHhc-CCCccccCCcccEEEEEecCcccHHHHHHHHHHHHhcCCcccChhHHhhhhhhHHHHHHHHHh
Confidence 4578999999999997 9987766 2 45555543211 111 2356788899
Q ss_pred CCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccc-----------C--c-ccc-ccccccc-
Q psy2407 100 GLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVT-----------E--D-KNE-LTMEWAF- 163 (245)
Q Consensus 100 Gl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~-----------~--~-~~~-~~~~~~~- 163 (245)
|+. -+++.+..+|+|++.||..|..+|++|.+ +.+||+++|....... . . +++ ...++..
T Consensus 161 gl~--Gp~~~v~~aCaSg~~Al~~A~~~I~~G~~--d~alvgG~e~~~~~~~~~~f~~~~~l~~~~~~~p~~~~~Pfd~~ 236 (424)
T PRK06333 161 GFK--GPLGAPVTACAAGVQAIGDAARLIRSGEA--DVAVCGGTEAAIDRVSLAGFAAARALSTRFNDAPEQASRPFDRD 236 (424)
T ss_pred CCC--CCCccccchhHHHHHHHHHHHHHHHcCCC--CEEEEeeecccCCHHHHHHHHHcccccccCCCCCCcCCCCCCCC
Confidence 994 57888999999999999999999999977 9999999998422110 0 0 000 0111111
Q ss_pred -ccccccceeEEEEecC
Q psy2407 164 -FEPSGGAGAVAMLISD 179 (245)
Q Consensus 164 -~~~~~GDGAaA~ll~~ 179 (245)
...+.||||+++||++
T Consensus 237 ~~G~~~gEGaa~lvLe~ 253 (424)
T PRK06333 237 RDGFVMGEGAGILVIET 253 (424)
T ss_pred CCCeEEecceEEEEEee
Confidence 1356899999999985
No 106
>PRK06690 acetyl-CoA acetyltransferase; Provisional
Probab=98.95 E-value=5.7e-09 Score=93.84 Aligned_cols=94 Identities=12% Similarity=0.090 Sum_probs=81.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN 126 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~ 126 (245)
.+.++.+|+..|++++++ |++ ++||.+|+++..+.. ...+..+...+|++..++++.|+++|++++.++..|..
T Consensus 21 ~~~~~~~L~~~a~~~~~~---gi~-~~Id~vi~G~~~~~~--~~~~r~~~~~~Gl~~~~p~~tV~~~CaSG~~Ai~~a~~ 94 (361)
T PRK06690 21 KDYEVQQLAAPLLTFLSK---GME-REIDDVILGNVVGPG--GNVARLSALEAGLGLHIPGVTIDRQCGAGLEAIRTACH 94 (361)
T ss_pred CCCCHHHHHHHHHHHHHc---cch-hhcCEEEEEecCCCc--chHHHHHHHHcCCCCCCCceehhhhhhHHHHHHHHHHH
Confidence 457789999999999843 786 899999999876542 45566788999996579999999999999999999999
Q ss_pred HHhcCCCCCCeEEEEEeccccc
Q psy2407 127 FILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 127 ~i~sg~~~~~~aLVv~~e~~s~ 148 (245)
+|++|.+ +.+|+++.|++|.
T Consensus 95 ~I~sG~~--d~~l~gG~E~ms~ 114 (361)
T PRK06690 95 FIQGGAG--KCYIAGGVESTST 114 (361)
T ss_pred HHHCCCC--CEEEEeccccccC
Confidence 9999977 9999999999975
No 107
>PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase
Probab=98.93 E-value=3.1e-08 Score=91.40 Aligned_cols=122 Identities=11% Similarity=0.018 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCc-----CCcCEEEEEeccCCC-----------------C--------CC-cHHHHHHHHc
Q psy2407 51 PVSFAINAAAPLIDNLSNIDK-----NSIELIITCSESGID-----------------F--------GK-SMSTYIHHYL 99 (245)
Q Consensus 51 ~~~la~~Aa~~aL~~a~g~~~-----~dId~li~~t~~~~~-----------------~--------~p-~~a~~l~~~L 99 (245)
...|+..|+.+||+++ |+++ .+...+++++..+.. . .+ ..+.+|...+
T Consensus 93 ~~~~~~~aa~~Al~dA-g~~~~~~~~~~~~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~~ 171 (437)
T PLN02836 93 FIGYALCAADEALSDA-RWLPSEDEAKERTGVSIGGGIGSITDILEAAQLICEKRLRRLSPFFVPRILINMAAGHVSIRY 171 (437)
T ss_pred HHHHHHHHHHHHHHHc-CCCcccccCCcCEEEEEeeccCcHHHHHHHHHHHHhcCCCCCChhhhhhhcccHHHHHHHHHh
Confidence 4578999999999997 9854 245667777643211 0 11 2466788899
Q ss_pred CCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc-----------------cCcccccccccc
Q psy2407 100 GLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFV-----------------TEDKNELTMEWA 162 (245)
Q Consensus 100 Gl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~-----------------~~~~~~~~~~~~ 162 (245)
|+. -+++.+..+|++++.||..|..+|++|.+ +.+||.++|...... ++.. ...++.
T Consensus 172 gl~--Gp~~tv~~acaSg~~Al~~A~~~I~~G~~--d~~lvgg~~~~~~~~~~~~~~~~~~l~~~~~~~p~~--~~~pfd 245 (437)
T PLN02836 172 GFQ--GPNHAAVTACATGAHSIGDAFRMIQFGDA--DVMVAGGTESSIDALSIAGFSRSRALSTKFNSCPTE--ASRPFD 245 (437)
T ss_pred CCC--CceeceeChhHHHHHHHHHHHHHHHcCCC--CEEEEccccccCCHHHHHHHHHhhhhhcccCCCccc--ccCCcc
Confidence 984 47889999999999999999999999977 999999988632110 0000 011111
Q ss_pred c--ccccccceeEEEEecC
Q psy2407 163 F--FEPSGGAGAVAMLISD 179 (245)
Q Consensus 163 ~--~~~~~GDGAaA~ll~~ 179 (245)
. ...+.||||+++||++
T Consensus 246 ~~~~G~~~gEGaaalVLe~ 264 (437)
T PLN02836 246 CDRDGFVIGEGAGVLVLEE 264 (437)
T ss_pred cCCCCeeeecCEEEEEEee
Confidence 1 1356899999999986
No 108
>PRK08142 acetyl-CoA acetyltransferase; Provisional
Probab=98.93 E-value=5.3e-09 Score=95.01 Aligned_cols=93 Identities=14% Similarity=0.123 Sum_probs=77.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN 126 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~ 126 (245)
++.+..+|+.+|+++||+++ |++++|||.++..+..+ +.....+++.||++ ..+...+.++|+++..++..|..
T Consensus 21 ~~~~~~~L~~eA~~~Al~DA-gl~~~dID~~~~~~~~~----~~~~~~~~~~lGl~-~~~~~~v~~gg~s~~~a~~~A~~ 94 (388)
T PRK08142 21 PDKSVAQLHAEVAKGALADA-GLSLADVDGYFCAGDAP----GLGPASMVDYLGLK-LRHVDSTETGGSSYLAHVGHAAQ 94 (388)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEcCCCC----CccHHHHHHhCCCC-CeeeccccCCcHHHHHHHHHHHH
Confidence 56788999999999999997 99999999987522211 11124588999994 56788889999999999999999
Q ss_pred HHhcCCCCCCeEEEEEecccc
Q psy2407 127 FILSKVSPGAKALVIATDISR 147 (245)
Q Consensus 127 ~i~sg~~~~~~aLVv~~e~~s 147 (245)
.|++|.+ +.|||++.|+++
T Consensus 95 ~I~sG~~--d~vLvvg~e~~~ 113 (388)
T PRK08142 95 AIAAGKC--SVALITLAGRPR 113 (388)
T ss_pred HHHcCCC--CEEEEEeeeecc
Confidence 9999988 999999999853
No 109
>PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional
Probab=98.91 E-value=3.1e-08 Score=90.98 Aligned_cols=125 Identities=16% Similarity=0.115 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHHHhcCCCC-cCCcCE----EEEEeccCCC--------------------------CCCcHHHHHHHH
Q psy2407 50 DPVSFAINAAAPLIDNLSNID-KNSIEL----IITCSESGID--------------------------FGKSMSTYIHHY 98 (245)
Q Consensus 50 ~~~~la~~Aa~~aL~~a~g~~-~~dId~----li~~t~~~~~--------------------------~~p~~a~~l~~~ 98 (245)
....|+..|+++||+++ |++ +++++. +++++..+.. ....++..|...
T Consensus 76 ~~~~l~~~aa~~Al~dA-Gl~~~~~~~~~~~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~ 154 (421)
T PTZ00050 76 RATHFAMAAAREALADA-KLDILSEKDQERIGVNIGSGIGSLADLTDEMKTLYEKGHSRVSPYFIPKILGNMAAGLVAIK 154 (421)
T ss_pred HHHHHHHHHHHHHHHHc-CCCcccccCcccEEEEEccCcccHHHHHHHHHHHHhcCcCcCCHHHHHhhhhhHHHHHHHHH
Confidence 45789999999999997 998 666543 3344332211 001345677888
Q ss_pred cCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc-----------c---Ccccc-ccccccc
Q psy2407 99 LGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFV-----------T---EDKNE-LTMEWAF 163 (245)
Q Consensus 99 LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~-----------~---~~~~~-~~~~~~~ 163 (245)
+|+. -+++.+..+|+|++.||..|..+|++|.+ +.+||+++|...... . ..++. ...++..
T Consensus 155 ~~l~--Gp~~ti~~aCaSg~~Al~~A~~~I~~G~~--d~~lvgG~e~~~~p~~~~~f~~~~~l~~~~~~~p~~~~~pfd~ 230 (421)
T PTZ00050 155 HKLK--GPSGSAVTACATGAHCIGEAFRWIKYGEA--DIMICGGTEASITPVSFAGFSRMRALCTKYNDDPQRASRPFDK 230 (421)
T ss_pred hCCC--CcccccccHhHHHHHHHHHHHHHHHcCCC--CEEEECcccccCCHHHHHHHHhhhccccCcCCCCCccCCCCcC
Confidence 8984 47788999999999999999999999977 999999999742210 0 00000 0111111
Q ss_pred --ccccccceeEEEEecC
Q psy2407 164 --FEPSGGAGAVAMLISD 179 (245)
Q Consensus 164 --~~~~~GDGAaA~ll~~ 179 (245)
...+.||||+++||++
T Consensus 231 ~~~G~~~gEGAaalvLe~ 248 (421)
T PTZ00050 231 DRAGFVMGEGAGILVLEE 248 (421)
T ss_pred CCCCEeeccceEEEEEee
Confidence 1356899999999986
No 110
>PRK07967 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=98.89 E-value=7.2e-08 Score=88.15 Aligned_cols=173 Identities=12% Similarity=0.105 Sum_probs=106.6
Q ss_pred CceeEEeEEeEecCCceecHHHHHHHc--CC---Ch-HHHhhccceee----------eecC-----CCCCHHHHHHHHH
Q psy2407 1 MIKVGIEAINLYGGSVFIDVIELAKYR--KL---DT-VRFENLLMQQK----------SVSL-----PYEDPVSFAINAA 59 (245)
Q Consensus 1 m~~~~I~~i~~~lP~~~v~~~~~~~~~--~~---~~-~~~~~~Gi~~r----------~~~~-----~~e~~~~la~~Aa 59 (245)
|.+|.|.|+|...|--. +.+++.+.+ |. .+ ..+...+...+ .+.. .-.....|+..|+
T Consensus 1 m~rVvITG~G~vsp~G~-~~~~~w~~l~~G~sgi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~a~~aa 79 (406)
T PRK07967 1 MRRVVITGLGIVSSIGN-NQQEVLASLREGRSGITFSPEFAEMGMRSQVWGNVKLDPTGLIDRKVMRFMGDASAYAYLAM 79 (406)
T ss_pred CCcEEEEcceEECCCCC-CHHHHHHHHHcCCCceeECCcccccCCCCceEEEcCCChhhcCCHHHhhcCCHHHHHHHHHH
Confidence 67899999999999874 556655432 11 10 00000011101 0000 0112456889999
Q ss_pred HHHHHhcCCCCcCCcC----EEEEEeccCCC--------------------------CC-CcHHHHHHHHcCCCCCccee
Q psy2407 60 APLIDNLSNIDKNSIE----LIITCSESGID--------------------------FG-KSMSTYIHHYLGLNRNCRLF 108 (245)
Q Consensus 60 ~~aL~~a~g~~~~dId----~li~~t~~~~~--------------------------~~-p~~a~~l~~~LGl~~~~~~~ 108 (245)
++||+++ |+++++.+ .|++++..+.. .. ...+..|...+|++ -+.+
T Consensus 80 ~~Al~dA-Gl~~~~~~~~rvGv~~gs~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~~l~--Gp~~ 156 (406)
T PRK07967 80 EQAIADA-GLSEEQVSNPRTGLIAGSGGGSTRNQVEAADAMRGPRGPKRVGPYAVTKAMASTVSACLATPFKIK--GVNY 156 (406)
T ss_pred HHHHHHc-CCCCccCCCCCEEEEEecCCccHHHHHHHHHHHHhccCcccCCchhhcccccchHHHHHHHHHCCC--CCcc
Confidence 9999997 98754322 24444422110 01 13577889999994 4778
Q ss_pred eecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccc----------C---cccc-ccccccc--cccccccee
Q psy2407 109 ELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVT----------E---DKNE-LTMEWAF--FEPSGGAGA 172 (245)
Q Consensus 109 dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~----------~---~~~~-~~~~~~~--~~~~~GDGA 172 (245)
.+..+|++++.||..|..+|++|.+ +.+||.++|..+.... . .+++ ...|+.. ..++.|+||
T Consensus 157 tvs~aCas~~~Ai~~A~~~ir~G~~--d~~lvgg~d~~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~r~G~v~gEGa 234 (406)
T PRK07967 157 SISSACATSAHCIGNAVEQIQLGKQ--DIVFAGGGEELDWEMSCLFDAMGALSTKYNDTPEKASRAYDANRDGFVIAGGG 234 (406)
T ss_pred ccccHhHHHHHHHHHHHHHHHcCCC--CEEEEeeecccChHHHHHHHHhhhhccCCCCCCCcCCcCCcCCCCceeeeceE
Confidence 8999999999999999999999977 9999999987533210 0 0000 0112211 135689999
Q ss_pred EEEEecC
Q psy2407 173 VAMLISD 179 (245)
Q Consensus 173 aA~ll~~ 179 (245)
++++|++
T Consensus 235 a~lvLe~ 241 (406)
T PRK07967 235 GVVVVEE 241 (406)
T ss_pred EEEEEee
Confidence 9999985
No 111
>PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=98.89 E-value=6.7e-08 Score=88.61 Aligned_cols=171 Identities=12% Similarity=0.084 Sum_probs=106.7
Q ss_pred eeEEeEEeEecCCceecHHHHHHHc--CCC---h-HHHh------hc-c-cee---eeecCC----C-CCHHHHHHHHHH
Q psy2407 3 KVGIEAINLYGGSVFIDVIELAKYR--KLD---T-VRFE------NL-L-MQQ---KSVSLP----Y-EDPVSFAINAAA 60 (245)
Q Consensus 3 ~~~I~~i~~~lP~~~v~~~~~~~~~--~~~---~-~~~~------~~-G-i~~---r~~~~~----~-e~~~~la~~Aa~ 60 (245)
.|.|.|+|...|--. +.+++.+.+ |.+ + +++. .. | +.. ..+..+ . .....++..|+.
T Consensus 5 ~VvItG~g~~~p~g~-~~~~~w~~L~~g~s~i~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~d~~~~~~l~a~~ 83 (414)
T PRK08722 5 RVVVTGMGMLSPVGN-TVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKDFNCEEYMSKKDARKMDLFIQYGIAAGI 83 (414)
T ss_pred CEEEEeeEEECCCCC-CHHHHHHHHHhCCCeeeecCccccccCCCceeEEcCCCChhHcCCHHHHhhcCHHHHHHHHHHH
Confidence 699999999999873 566665432 111 0 0110 00 1 110 000000 0 113458889999
Q ss_pred HHHHhcCCCCcCCcC----EEEEEeccCCC-------------------------CCC-cHHHHHHHHcCCCCCcceeee
Q psy2407 61 PLIDNLSNIDKNSIE----LIITCSESGID-------------------------FGK-SMSTYIHHYLGLNRNCRLFEL 110 (245)
Q Consensus 61 ~aL~~a~g~~~~dId----~li~~t~~~~~-------------------------~~p-~~a~~l~~~LGl~~~~~~~dv 110 (245)
+||+++ |+++.+.+ .|++++..+.. ..+ ..+.++...+|+. -+.+.+
T Consensus 84 ~Al~dA-Gl~~~~~~~~r~Gv~vGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~gl~--Gp~~ti 160 (414)
T PRK08722 84 QALDDS-GLEVTEENAHRIGVAIGSGIGGLGLIEAGHQALVEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLR--GPNIAI 160 (414)
T ss_pred HHHHHc-CCCccccCCCCEEEEEeeCCCcchhHHHHHHHHHhcCcccCCchhcccccccHHHHHHHHHhCCC--CCcccc
Confidence 999997 98754333 35555542210 011 3677888999994 478899
Q ss_pred cCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc-----------ccC--cccc-ccccccc--ccccccceeEE
Q psy2407 111 KQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF-----------VTE--DKNE-LTMEWAF--FEPSGGAGAVA 174 (245)
Q Consensus 111 ~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~-----------~~~--~~~~-~~~~~~~--~~~~~GDGAaA 174 (245)
..+|++++.||..|..+|++|.+ +.+||.++|..... +.. .+++ ...++.. ...+.||||++
T Consensus 161 ~~aCas~~~Al~~A~~~i~~G~~--d~~lvgg~d~~~~~~~~~~f~~~~~ls~~~~~p~~~~rpfd~~~~G~~~gEGaaa 238 (414)
T PRK08722 161 STACTTGLHNIGHAARMIAYGDA--DAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGAGM 238 (414)
T ss_pred ccccHHHHHHHHHHHHHHHcCCC--CEEEEecccccCCHHHHHHHHHcCCcccCCCCCccccCcCcCCCCceEeeceEEE
Confidence 99999999999999999999977 99999999985431 100 0000 1112211 13568999999
Q ss_pred EEecC
Q psy2407 175 MLISD 179 (245)
Q Consensus 175 ~ll~~ 179 (245)
+||++
T Consensus 239 lvLe~ 243 (414)
T PRK08722 239 MVLEE 243 (414)
T ss_pred EEEcc
Confidence 99986
No 112
>PRK08257 acetyl-CoA acetyltransferase; Validated
Probab=98.83 E-value=3.1e-08 Score=92.74 Aligned_cols=93 Identities=16% Similarity=0.103 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHHHhcCCCC--cCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHH
Q psy2407 50 DPVSFAINAAAPLIDNLSNID--KNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINF 127 (245)
Q Consensus 50 ~~~~la~~Aa~~aL~~a~g~~--~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~ 127 (245)
+..+|+.+|+++||+++ |++ ++|||.+++++.... ........+++.||+. ..+......||.++..++..|...
T Consensus 26 s~~~L~~eA~~~Al~DA-Gl~~~~~dID~v~v~~~~~~-~~~~~~~~la~~lGl~-p~~~~~~~~GG~s~~~~v~~Aa~~ 102 (498)
T PRK08257 26 EPVDLMAAAARAAAADA-GADAVLEAIDSVAVVNQLSW-RYRDPPGLLAERLGAD-PARTVYSPVGGNSPQRLVNEAALR 102 (498)
T ss_pred CHHHHHHHHHHHHHHhc-CCCcCHHHCCEEEEeccccc-cccCHHHHHHHHcCCC-CcceeEecCCCHHHHHHHHHHHHH
Confidence 78999999999999997 999 999999998755321 2233467899999995 345555667899999999999999
Q ss_pred HhcCCCCCCeEEEEEecccc
Q psy2407 128 ILSKVSPGAKALVIATDISR 147 (245)
Q Consensus 128 i~sg~~~~~~aLVv~~e~~s 147 (245)
|++|.+ +.|||+++|+++
T Consensus 103 IasG~a--dvVLv~G~E~~~ 120 (498)
T PRK08257 103 IAAGEA--DVALVAGAEAQS 120 (498)
T ss_pred HHCCCC--CEEEEeeeeecc
Confidence 999987 999999999865
No 113
>PRK07855 lipid-transfer protein; Provisional
Probab=98.81 E-value=2.7e-08 Score=90.43 Aligned_cols=89 Identities=11% Similarity=0.114 Sum_probs=74.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN 126 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~ 126 (245)
++.+..+|+.+|+++||+++ |++++|||.+++.+.. ..+ ...+++.||+++..+...+.++|+++..++..|..
T Consensus 20 ~~~~~~~L~~eA~~~Al~DA-gl~~~dID~~~~~~~~---~~~--~~~l~~~lGl~~~~~~~~v~~gg~sg~~~~~~A~~ 93 (386)
T PRK07855 20 SGRSELRLACEAVLAALDDA-GLAPSDVDGLVTFTMD---TNP--EIAVARALGIGELKFFSRIHYGGGAACATVQQAAM 93 (386)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEecCc---ccc--HHHHHHHCCCCCCcceeeecCCcHHHHHHHHHHHH
Confidence 46788999999999999997 9999999999864321 222 25688999995324556889999999999999999
Q ss_pred HHhcCCCCCCeEEEEEe
Q psy2407 127 FILSKVSPGAKALVIAT 143 (245)
Q Consensus 127 ~i~sg~~~~~~aLVv~~ 143 (245)
.|++|.+ +.|||++.
T Consensus 94 ~I~sG~~--d~vLv~g~ 108 (386)
T PRK07855 94 AVATGVA--DVVVCYRA 108 (386)
T ss_pred HHHCCCC--CEEEEEee
Confidence 9999988 99999988
No 114
>PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II
Probab=98.81 E-value=1.9e-07 Score=88.01 Aligned_cols=172 Identities=15% Similarity=0.140 Sum_probs=105.7
Q ss_pred ceeEEeEEeEecCCceecHHHHHHHc--CC---Ch------HHHh-hc-c-ceeee---ecCC----C-CCHHHHHHHHH
Q psy2407 2 IKVGIEAINLYGGSVFIDVIELAKYR--KL---DT------VRFE-NL-L-MQQKS---VSLP----Y-EDPVSFAINAA 59 (245)
Q Consensus 2 ~~~~I~~i~~~lP~~~v~~~~~~~~~--~~---~~------~~~~-~~-G-i~~r~---~~~~----~-e~~~~la~~Aa 59 (245)
+.|.|.|+|...|--. +.+++.+.+ |. .+ ..+. +. | ++... +..+ . .....++..|+
T Consensus 129 ~rVvITG~G~vtp~G~-~~~~~w~~L~~G~s~i~~~~~f~~~~~~~~~ag~i~~f~~~~~l~~k~~r~md~~~~~al~Aa 207 (540)
T PLN02787 129 RRVVVTGMGVVSPLGH-DPDVFYNNLLEGVSGISEIERFDCSQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 207 (540)
T ss_pred CCEEEEeeEEECCCCC-CHHHHHHHHHcCCCcccccCccchhhCCccccccccccChhhcCCHHHHHhCCHHHHHHHHHH
Confidence 3699999999999873 566665433 11 10 0010 11 1 11000 0000 1 12346888999
Q ss_pred HHHHHhcCCCCcCC---c----CEEEEEeccCCC--------------------CC-----CcHHHHHHHHcCCCCCcce
Q psy2407 60 APLIDNLSNIDKNS---I----ELIITCSESGID--------------------FG-----KSMSTYIHHYLGLNRNCRL 107 (245)
Q Consensus 60 ~~aL~~a~g~~~~d---I----d~li~~t~~~~~--------------------~~-----p~~a~~l~~~LGl~~~~~~ 107 (245)
++||+++ |++++. + -.|++++..+.. .. ...+..|+..+|+. -+.
T Consensus 208 ~eAL~dA-Gl~~~~~~~~~~~r~GV~vGt~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~~gl~--Gp~ 284 (540)
T PLN02787 208 KKALADG-GITEDVMKELDKTKCGVLIGSAMGGMKVFNDAIEALRISYRKMNPFCVPFATTNMGSAMLAMDLGWM--GPN 284 (540)
T ss_pred HHHHHHc-CCCcccccccCCCceEEEEEeccchHHHHHHHHHHHhhccccCCcchhhhhcccHHHHHHHHHhCCC--CCc
Confidence 9999997 987542 2 145666543210 01 12356788889994 478
Q ss_pred eeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc-----------cc--Ccccc-ccccccc--ccccccce
Q psy2407 108 FELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF-----------VT--EDKNE-LTMEWAF--FEPSGGAG 171 (245)
Q Consensus 108 ~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~-----------~~--~~~~~-~~~~~~~--~~~~~GDG 171 (245)
+.+..+|++++.||..|.++|++|.+ +.+||.++|..... +. ..++. ...+|.. ..+++|+|
T Consensus 285 ~tistACASs~~Ai~~A~~~Ir~G~a--D~aLvGG~d~~l~p~~~~~f~~~~aLS~~~~~p~~~~rPFD~~rdGfv~GEG 362 (540)
T PLN02787 285 YSISTACATSNFCILNAANHIIRGEA--DVMLCGGSDAAIIPIGLGGFVACRALSQRNDDPTKASRPWDMNRDGFVMGEG 362 (540)
T ss_pred cccccccccHHHHHHHHHHHHHcCCC--CEEEEeccccccCHHHHHHHHHHHHhhccCCCcccccCCcccCCCCcccccc
Confidence 88999999999999999999999977 99999999963111 10 01110 1112221 13678999
Q ss_pred eEEEEecC
Q psy2407 172 AVAMLISD 179 (245)
Q Consensus 172 AaA~ll~~ 179 (245)
|+++||++
T Consensus 363 Aa~lVLE~ 370 (540)
T PLN02787 363 AGVLLLEE 370 (540)
T ss_pred eEEEEEee
Confidence 99999985
No 115
>PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=98.81 E-value=2.1e-07 Score=85.11 Aligned_cols=172 Identities=15% Similarity=0.093 Sum_probs=106.5
Q ss_pred CceeEEeEEeEecCCceecHHHHHHHc--CCC-----hHH-----Hh-hc-c-cee---eeecCC----C-CCHHHHHHH
Q psy2407 1 MIKVGIEAINLYGGSVFIDVIELAKYR--KLD-----TVR-----FE-NL-L-MQQ---KSVSLP----Y-EDPVSFAIN 57 (245)
Q Consensus 1 m~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~-----~~~-----~~-~~-G-i~~---r~~~~~----~-e~~~~la~~ 57 (245)
|++|.|.|+|...|--. +.+++.+.+ |.+ +++ +. +. | +.. .....+ . .....|+..
T Consensus 1 m~~VvITG~g~vtp~G~-~~~~~~~~L~~g~s~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~r~~~~~~~~al~ 79 (405)
T PRK09116 1 MRRVVVTGMGGVTALGE-DWQTIAARLKAGRNAVRRMPEWDRYDGLNTRLAAPIDDFELPAHYTRKKIRSMGRVSLMATR 79 (405)
T ss_pred CCCEEEEeeEEECCCCC-CHHHHHHHHHcCCCCEEeCCchhhccCCCCceEEEecCcChhHhcCHHHHhhCCHHHHHHHH
Confidence 67899999999999874 556655432 111 011 00 00 1 100 000000 0 123568999
Q ss_pred HHHHHHHhcCCCCc------CCcCEEEEEeccCC-----------------C--------CCC-cHHHHHHHHcCCCCCc
Q psy2407 58 AAAPLIDNLSNIDK------NSIELIITCSESGI-----------------D--------FGK-SMSTYIHHYLGLNRNC 105 (245)
Q Consensus 58 Aa~~aL~~a~g~~~------~dId~li~~t~~~~-----------------~--------~~p-~~a~~l~~~LGl~~~~ 105 (245)
|+++||+++ |+.. +++ .+++++..+. . .+| ..+..|+..+|++ -
T Consensus 80 aa~~Al~dA-Gl~~~~~~~~~r~-Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~~~~--G 155 (405)
T PRK09116 80 ASELALEDA-GLLGDPILTDGRM-GIAYGSSTGSTDPIGAFGTMLLEGSMSGITATTYVRMMPHTTAVNVGLFFGLK--G 155 (405)
T ss_pred HHHHHHHHc-CCCCccccCCCcE-EEEEeecccchHHHHHHHHHHhhcCccccChhhhhhhcccHHHHHHHHHhCCC--C
Confidence 999999997 9842 233 4555553221 0 112 2577888999994 4
Q ss_pred ceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc----------cC--cccc-ccccccc--ccccccc
Q psy2407 106 RLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFV----------TE--DKNE-LTMEWAF--FEPSGGA 170 (245)
Q Consensus 106 ~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~----------~~--~~~~-~~~~~~~--~~~~~GD 170 (245)
+.+.+..+|++++.||..|..+|++|.+ +.+||.++|..+... .. ..+. ...++.. ..++.|+
T Consensus 156 p~~ti~~acas~~~Al~~A~~~I~~G~~--d~~lvgg~d~~~~~~~~~f~~l~~~~~~~~~~~~~~rPfd~~~~G~v~gE 233 (405)
T PRK09116 156 RVIPTSSACTSGSQGIGYAYEAIKYGYQ--TVMLAGGAEELCPTEAAVFDTLFATSTRNDAPELTPRPFDANRDGLVIGE 233 (405)
T ss_pred CcccccchhhhHHHHHHHHHHHHHcCCC--CEEEEecchhcChHHHHHHHHhhhhccCCCCCCCCCCCCcCCCCCEeeec
Confidence 7889999999999999999999999977 999999999754210 00 0000 1112211 1356899
Q ss_pred eeEEEEecC
Q psy2407 171 GAVAMLISD 179 (245)
Q Consensus 171 GAaA~ll~~ 179 (245)
||++++|++
T Consensus 234 Ga~~~vLe~ 242 (405)
T PRK09116 234 GAGTLVLEE 242 (405)
T ss_pred cEEEEEEcc
Confidence 999999985
No 116
>PRK06066 acetyl-CoA acetyltransferase; Provisional
Probab=98.79 E-value=4.9e-08 Score=88.55 Aligned_cols=95 Identities=16% Similarity=0.116 Sum_probs=73.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCC-CCc-CCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSN-IDK-NSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA 124 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g-~~~-~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A 124 (245)
++.+..+|+.+|+++||+++ | +++ +|||.+++++.............+++.||+. ..+.+.+ |+++..++..|
T Consensus 21 ~~~s~~eL~~eA~~~Al~DA-G~l~~~~dId~~~~~~~~~~~~~~~~~~~~~~~lg~~-~~~~~~v---~~sg~~a~~~A 95 (385)
T PRK06066 21 PEVSFREMMFEAASRAYKDA-GNINPRRDVDSFISCQEDFWEGIAIADEFAPDQIGGA-MRPTMTV---AGDGLQGLAHA 95 (385)
T ss_pred CCCCHHHHHHHHHHHHHHhc-CCCCChhcCCEEEEecCcccCcccccchhHHHHcccC-CCCeEEE---eCcHHHHHHHH
Confidence 47888999999999999997 9 997 7999998753211000112234567889984 3455555 88999999999
Q ss_pred HHHHhcCCCCCCeEEEEEeccccc
Q psy2407 125 INFILSKVSPGAKALVIATDISRF 148 (245)
Q Consensus 125 ~~~i~sg~~~~~~aLVv~~e~~s~ 148 (245)
...|++|.+ ++|||++.|+++.
T Consensus 96 ~~aV~sG~~--d~vLv~g~~~~~~ 117 (385)
T PRK06066 96 VMHINSGLA--NVVVVEAHSKPSD 117 (385)
T ss_pred HHHHHcCCC--CEEEEEEEeeccC
Confidence 999999988 9999999997643
No 117
>PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional
Probab=98.78 E-value=2.4e-07 Score=82.80 Aligned_cols=123 Identities=12% Similarity=0.044 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHhcCCC--CcCCcCEEEEEeccCCC-----------------CCC---------cHHHHHHHHcCCC
Q psy2407 51 PVSFAINAAAPLIDNLSNI--DKNSIELIITCSESGID-----------------FGK---------SMSTYIHHYLGLN 102 (245)
Q Consensus 51 ~~~la~~Aa~~aL~~a~g~--~~~dId~li~~t~~~~~-----------------~~p---------~~a~~l~~~LGl~ 102 (245)
...++..|+++|++++ |+ +++++..++ ++..+.. ..| ..+..|...+|++
T Consensus 4 ~~~~~~~a~~~a~~~a-~~~~~~~r~Gv~~-G~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~~~l~ 81 (342)
T PRK14691 4 WWRYKWITFHPSLTHA-DNTEKQERTATII-GAGIGGFPAIAHAVRTSDSRGPKRLSPFTVPSFLVNLAAGHVSIKHHFK 81 (342)
T ss_pred HHHHHHHHHHHHHHhC-CCCCCcccEEEEE-ecCcccHHHHHHHHHHHHhcCccccChhHHhhhhhhHHHHHHHHHhCCC
Confidence 3568899999999997 96 566665554 4432110 001 3567788889994
Q ss_pred CCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc-----------cc---Ccccc-ccccccc--cc
Q psy2407 103 RNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF-----------VT---EDKNE-LTMEWAF--FE 165 (245)
Q Consensus 103 ~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~-----------~~---~~~~~-~~~~~~~--~~ 165 (245)
-+.+.+..+|+|++.||..|..+|+.|.. +.+||.++|..... +. ..+++ ...|+.. ..
T Consensus 82 --Gp~~ti~~aCaSg~~Al~~A~~~I~~G~~--d~~ivgg~d~~~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~r~G 157 (342)
T PRK14691 82 --GPIGAPVTACAAGVQAIGDAVRMIRNNEA--DVALCGGAEAVIDTVSLAGFAAARALSTHFNSTPEKASRPFDTARDG 157 (342)
T ss_pred --CCccccccHhHHHHHHHHHHHHHHHcCCC--CEEEEecccccCCHHHHHHHHHhhhhhcCCCCCCCcCCCCCCCCCCC
Confidence 47888999999999999999999999977 99999999974221 10 00111 1112221 13
Q ss_pred ccccceeEEEEecC
Q psy2407 166 PSGGAGAVAMLISD 179 (245)
Q Consensus 166 ~~~GDGAaA~ll~~ 179 (245)
+++||||++++|++
T Consensus 158 ~v~gEGAa~lvLes 171 (342)
T PRK14691 158 FVMGEGAGLLIIEE 171 (342)
T ss_pred ccccceEEEEEEee
Confidence 57899999999985
No 118
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria. CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.
Probab=98.74 E-value=3.2e-07 Score=83.75 Aligned_cols=123 Identities=13% Similarity=0.077 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCcC----EEEEEeccCCC-----------------CC---------CcHHHHHHHHcC
Q psy2407 51 PVSFAINAAAPLIDNLSNIDKNSIE----LIITCSESGID-----------------FG---------KSMSTYIHHYLG 100 (245)
Q Consensus 51 ~~~la~~Aa~~aL~~a~g~~~~dId----~li~~t~~~~~-----------------~~---------p~~a~~l~~~LG 100 (245)
...|+..|+++||+++ |+++++++ .|++++..+.+ .. ...+..|...+|
T Consensus 71 ~~~~~l~aa~eAl~dA-Gl~~~~~~~~r~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~g 149 (399)
T cd00832 71 MTRLALAAADWALADA-GVDPAALPPYDMGVVTASAAGGFEFGQRELQKLWSKGPRHVSAYQSFAWFYAVNTGQISIRHG 149 (399)
T ss_pred HHHHHHHHHHHHHHHc-CCCccccCCCceEEEEccCCccHHHHHHHHHHHHhcCccccChhhhhhhhhhHHHHHHHHHhC
Confidence 4568999999999997 99765443 35555543211 00 124567888999
Q ss_pred CCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc-----------ccC-cccc-ccccccc--cc
Q psy2407 101 LNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF-----------VTE-DKNE-LTMEWAF--FE 165 (245)
Q Consensus 101 l~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~-----------~~~-~~~~-~~~~~~~--~~ 165 (245)
+. -+++.+..+|++++.||..|.++|++| + +.+||.++|..... +.. .++. ...++.. ..
T Consensus 150 l~--Gp~~ti~~acaS~~~Al~~A~~~i~~G--~-d~~i~gg~d~~~~p~~~~~~~~~~~ls~~~~p~~~~rPFd~~~~G 224 (399)
T cd00832 150 MR--GPSGVVVAEQAGGLDALAQARRLVRRG--T-PLVVSGGVDSALCPWGWVAQLSSGRLSTSDDPARAYLPFDAAAAG 224 (399)
T ss_pred CC--CCcccccchhHHHHHHHHHHHHHHHcC--C-CeEEEEeeccccCHHHHHHHHhccccCCCCCCCCCcCCCcCCCCC
Confidence 94 478889999999999999999999999 7 89999999874321 100 0100 1112211 13
Q ss_pred ccccceeEEEEecC
Q psy2407 166 PSGGAGAVAMLISD 179 (245)
Q Consensus 166 ~~~GDGAaA~ll~~ 179 (245)
++.|+||++++|++
T Consensus 225 ~~~gEGa~~lvLe~ 238 (399)
T cd00832 225 YVPGEGGAILVLED 238 (399)
T ss_pred EeeeceEEEEEEee
Confidence 57899999999986
No 119
>COG0183 PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism]
Probab=98.74 E-value=4.6e-08 Score=89.03 Aligned_cols=101 Identities=13% Similarity=0.096 Sum_probs=80.1
Q ss_pred CCCHHHHHHHHHHHHHHhc-CCCCcCCcCEEEEEeccCCC-CCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407 48 YEDPVSFAINAAAPLIDNL-SNIDKNSIELIITCSESGID-FGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI 125 (245)
Q Consensus 48 ~e~~~~la~~Aa~~aL~~a-~g~~~~dId~li~~t~~~~~-~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~ 125 (245)
+....++.....+..+++. .++++.+||.++.++..+.. ..+..+..++..+|++.++|.+.|+.+|+|++.++..|.
T Consensus 24 ~l~~e~l~~a~~~a~~~~~~~~vd~~~v~~~~~G~~~~~g~~~~~~ar~~a~~aGl~~~~p~~~V~~~c~SG~~Av~~A~ 103 (392)
T COG0183 24 ELAAEALGAALIDAGLERAPADVDAADVDDVILGCVLQAGEQGQNIARQAALAAGLPGSVPAVTVNRACASGLAAVRLAA 103 (392)
T ss_pred hcCHHHHHHHHHHHHhhhccccCCHHHhhhheeccccccccccccHHHHHHHHcCCCCCCCceEEeccchhHHHHHHHHH
Confidence 3444555555555554321 14666778888998776653 466889999999999656999999999999999999999
Q ss_pred HHHhcCCCCCCeEEEEEeccccccc
Q psy2407 126 NFILSKVSPGAKALVIATDISRFFV 150 (245)
Q Consensus 126 ~~i~sg~~~~~~aLVv~~e~~s~~~ 150 (245)
..|++|.+ +.+|+++.|++|...
T Consensus 104 ~~I~sG~~--dvvlagG~E~mS~~~ 126 (392)
T COG0183 104 QAIASGEA--DVVLAGGVEKMSDAP 126 (392)
T ss_pred HHHHCCCC--CEEEEEeeeeccCCC
Confidence 99999977 999999999999875
No 120
>KOG1390|consensus
Probab=98.71 E-value=3.9e-08 Score=84.90 Aligned_cols=112 Identities=10% Similarity=0.035 Sum_probs=99.1
Q ss_pred hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcch
Q psy2407 36 NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACY 115 (245)
Q Consensus 36 ~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~ 115 (245)
||-|..++-.....++.+|+.-|++.+|+++ +++++|++-+|++...+....-.++++.+--.||+..+++..++.-|+
T Consensus 15 RTPIGsF~gslssl~A~~Lgsvaikaalera-~v~~~~v~eVi~GnVl~AnlGQapaRQaalgAGlp~sv~~tTvNkvCa 93 (396)
T KOG1390|consen 15 RTPIGSFRGSLSSLTATELGSVAIKAALERA-VVPPSDVAEVIFGNVLSANLGQAPARQAALGAGLPYSVPATTVNKVCA 93 (396)
T ss_pred cccccccccccccCchhhHHHHHHHHHHHhc-CCCHHHhhhhhhccccccccCcchHHHHHhhcCCCcceeeEeehhhhh
Confidence 5666666666677899999999999999997 999999999999988776666677999998999987899999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc
Q psy2407 116 SCTAGLQMAINFILSKVSPGAKALVIATDISRFFV 150 (245)
Q Consensus 116 ~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~ 150 (245)
|++.++.+|.+-|+.|.. +.++..+.|.||..-
T Consensus 94 SgmKAv~laaQsI~~G~~--divVaGGmEsMS~vP 126 (396)
T KOG1390|consen 94 SGMKAVILAAQSIQTGHA--DIVVAGGMESMSNVP 126 (396)
T ss_pred hhHHHHHHHHHHHhcCCc--cEEEecccchhccCc
Confidence 999999999999999966 999999999998753
No 121
>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=98.69 E-value=5.3e-07 Score=82.79 Aligned_cols=172 Identities=12% Similarity=0.029 Sum_probs=104.5
Q ss_pred CceeEEeEEeEecCCceecHHHHHHHc--CC------ChHHHhhccceee---eec-------CC----C-CCHHHHHHH
Q psy2407 1 MIKVGIEAINLYGGSVFIDVIELAKYR--KL------DTVRFENLLMQQK---SVS-------LP----Y-EDPVSFAIN 57 (245)
Q Consensus 1 m~~~~I~~i~~~lP~~~v~~~~~~~~~--~~------~~~~~~~~Gi~~r---~~~-------~~----~-e~~~~la~~ 57 (245)
|+.|.|.|+|...|--. +.+++.+.+ |. +...+...++..+ .+. .+ . .....++..
T Consensus 11 ~~~VvItGig~~sp~g~-~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~g~i~~~~d~~~~~~~~~~~d~~~~~~l~ 89 (418)
T PRK07910 11 FPNVVVTGIAMTTALAT-DAETTWKLLLDGQSGIRTLDDPFVEEFDLPVRIGGHLLEEFDHQLTRVELRRMSYLQRMSTV 89 (418)
T ss_pred CCCEEEEeeEEECCCCC-CHHHHHHHHHcCCCeeEeCChhhhhccCCCcceEEEeccCccccCCHHHHhhccHHHHHHHH
Confidence 46799999999999864 566665543 11 1111111000000 000 00 0 123458889
Q ss_pred HHHHHHHhcCCC---CcCCcCEEEEEeccCCC-------------------------CCC-cHHHHHHHHcCCCCCccee
Q psy2407 58 AAAPLIDNLSNI---DKNSIELIITCSESGID-------------------------FGK-SMSTYIHHYLGLNRNCRLF 108 (245)
Q Consensus 58 Aa~~aL~~a~g~---~~~dId~li~~t~~~~~-------------------------~~p-~~a~~l~~~LGl~~~~~~~ 108 (245)
|+++||+++ |+ ++.++..+ +++..+.. ..+ ..+..+...+|+. -+.+
T Consensus 90 aa~~AledA-g~~~~~~~r~Gv~-~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~~~~--G~~~ 165 (418)
T PRK07910 90 LGRRVWENA-GSPEVDTNRLMVS-IGTGLGSAEELVFAYDDMRARGLRAVSPLAVQMYMPNGPAAAVGLERHAK--AGVI 165 (418)
T ss_pred HHHHHHHHc-CCCCCCcccEEEE-EEEccCccHhHHHHHHHHHhcCcccCChhHHHHhccccHHHHHHHHhCCC--CCcc
Confidence 999999997 86 44555444 44432110 011 2456677778874 3678
Q ss_pred eecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc------------ccC--cccc-ccccccc--ccccccce
Q psy2407 109 ELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF------------VTE--DKNE-LTMEWAF--FEPSGGAG 171 (245)
Q Consensus 109 dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~------------~~~--~~~~-~~~~~~~--~~~~~GDG 171 (245)
.+..+|+|++.||..|.++|++|.+ +.+||.++|..... +.. .+++ ...++.. ..+++|+|
T Consensus 166 ti~taCaS~~~Al~~A~~~I~~G~~--d~aivgg~~~~~~~~~~~~f~~~~~~ls~~~~~~~~~~rPFd~~~~G~v~gEG 243 (418)
T PRK07910 166 TPVSACASGSEAIAQAWRQIVLGEA--DIAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDKDRDGFVFGEG 243 (418)
T ss_pred cccchhHHHHHHHHHHHHHHHcCCC--CEEEEccccccCCHHHHHHHHhcCCccccCCCCCCCCcCCCcCCCCCEeeece
Confidence 8899999999999999999999977 99999999974221 110 0000 1112211 14679999
Q ss_pred eEEEEecC
Q psy2407 172 AVAMLISD 179 (245)
Q Consensus 172 AaA~ll~~ 179 (245)
+++++|++
T Consensus 244 aa~vvLe~ 251 (418)
T PRK07910 244 GALMVIET 251 (418)
T ss_pred EEEEEEee
Confidence 99999986
No 122
>KOG1406|consensus
Probab=98.58 E-value=7.6e-08 Score=81.35 Aligned_cols=96 Identities=15% Similarity=0.115 Sum_probs=81.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN 126 (245)
Q Consensus 47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~ 126 (245)
++-+-+||+.+|..+||+++ ++.-++|+.-+++-..++... ..+..-.+|+ ..+|.+.|+++|+++-.+|.+|.+
T Consensus 25 ~~~dypd~a~ea~tkal~da-~ikys~vqqa~vgyvfgdstc---gqraiyevgm-tgipi~nvnnncatgssalflakq 99 (408)
T KOG1406|consen 25 ADWDYPDFAKEAITKALQDA-GIKYSEVQQAVVGYVFGDSTC---GQRAIYEVGM-TGIPIYNVNNNCATGSSALFLAKQ 99 (408)
T ss_pred cCCCCchHHHHHHHHHHHhc-CCCHHHHHhhhheeeecCCcc---chHHHHhccc-cCcceeeccCccccCchHHHHHHH
Confidence 45677899999999999997 999999988877666554332 3444458999 589999999999999999999999
Q ss_pred HHhcCCCCCCeEEEEEecccccc
Q psy2407 127 FILSKVSPGAKALVIATDISRFF 149 (245)
Q Consensus 127 ~i~sg~~~~~~aLVv~~e~~s~~ 149 (245)
+|++|.. ++||..+-|++++.
T Consensus 100 iiesgn~--dcvlalgfekm~~g 120 (408)
T KOG1406|consen 100 IIESGNS--DCVLALGFEKMERG 120 (408)
T ss_pred HHhcCCc--ceEEeechhhhCCc
Confidence 9999966 99999999999654
No 123
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.56 E-value=7.7e-06 Score=82.93 Aligned_cols=121 Identities=14% Similarity=0.085 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCcC----EEEEEeccCCCCCC-------------------cHHHHHHHHcCCCCCccee
Q psy2407 52 VSFAINAAAPLIDNLSNIDKNSIE----LIITCSESGIDFGK-------------------SMSTYIHHYLGLNRNCRLF 108 (245)
Q Consensus 52 ~~la~~Aa~~aL~~a~g~~~~dId----~li~~t~~~~~~~p-------------------~~a~~l~~~LGl~~~~~~~ 108 (245)
.-|..+.+-+||+++ |+++..+. .|+.+....+|... ..+.+|...|++. -|.+
T Consensus 92 qRllLe~aw~AlEdA-G~~~~~l~g~~tgV~~g~~~~~y~~~~~~~~~~~~~~~~~g~~~~~~a~Risy~l~l~--GPs~ 168 (1061)
T COG3321 92 QRLLLEVAWEALEDA-GIYPDSLRGSATGVFAGASVADYLLLLLADDEAEPEYAITGNSSSVAAGRISYVLGLS--GPSV 168 (1061)
T ss_pred HhHHHHHHHHHHHHc-CCCccccCCcceEEEEeeccCccccccccccccccceecccchhhHHHHHHHHHhcCC--CCCc
Confidence 348999999999997 99999888 46666665555432 2577889999994 5889
Q ss_pred eecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc-----------cCcccccccccc--cccccccceeEEE
Q psy2407 109 ELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFV-----------TEDKNELTMEWA--FFEPSGGAGAVAM 175 (245)
Q Consensus 109 dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~-----------~~~~~~~~~~~~--~~~~~~GDGAaA~ 175 (245)
.|..+|+|.+.|+++|...|.+|.+ +.+|+-+....-... .+++ +...+. ...++.|.|+.++
T Consensus 169 ~vdtaCSSsLvAvhlA~~sL~~Ge~--d~alaGgv~l~~~p~~~~~~~~~g~ls~~g--~c~~fd~~adG~v~geG~g~v 244 (1061)
T COG3321 169 TVDTACSSSLVAVHLACQSLRLGEC--DLALAGGVNLVLSPESSYLFSAGGMLSPDG--RCKAFDADADGYVRGEGAGVV 244 (1061)
T ss_pred cccchhhHHHHHHHHHHHHHHcCCC--CEEEecceEeccCCcceeeeecccCcCCCC--cceecccCCCCEEEeeeEEEE
Confidence 9999999999999999999999977 999988886652221 1122 221111 1245789999999
Q ss_pred EecC
Q psy2407 176 LISD 179 (245)
Q Consensus 176 ll~~ 179 (245)
+|.+
T Consensus 245 vLKr 248 (1061)
T COG3321 245 VLKR 248 (1061)
T ss_pred EEEE
Confidence 9986
No 124
>PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=98.56 E-value=9.8e-07 Score=80.49 Aligned_cols=171 Identities=15% Similarity=0.025 Sum_probs=103.8
Q ss_pred ceeEEeEEeEecCCceecHHHHHHHc--CCCh-----HHHh--h---cc-------ceeeeecCCCCCHHHHHHHHHHHH
Q psy2407 2 IKVGIEAINLYGGSVFIDVIELAKYR--KLDT-----VRFE--N---LL-------MQQKSVSLPYEDPVSFAINAAAPL 62 (245)
Q Consensus 2 ~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~~-----~~~~--~---~G-------i~~r~~~~~~e~~~~la~~Aa~~a 62 (245)
++|.|.|+|...|--. +.+++.+.+ |.+. ..+. . .| +..+.....-.....|+..|+++|
T Consensus 6 ~rVvITGiG~vsp~G~-~~e~~w~aL~~G~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~a~~Aa~~A 84 (398)
T PRK06519 6 NDVVITGIGLVSSLGE-GLDAHWNALSAGRPQPNVDTETFAPYPVHPLPEIDWSQQIPKRGDQRQMETWQRLGTYAAGLA 84 (398)
T ss_pred CCEEEEcceEECCCCC-CHHHHHHHHHcCCCCCCCCcccccCcCcccccccChhhcCCchhhhhccCHHHHHHHHHHHHH
Confidence 3689999999999864 555555432 2221 1000 0 01 101100000122456899999999
Q ss_pred HHhcCCCCcC-----CcCEEEEEeccCCC-----------------------------C--------CC-cHHHHHHHHc
Q psy2407 63 IDNLSNIDKN-----SIELIITCSESGID-----------------------------F--------GK-SMSTYIHHYL 99 (245)
Q Consensus 63 L~~a~g~~~~-----dId~li~~t~~~~~-----------------------------~--------~p-~~a~~l~~~L 99 (245)
|+++ |++.. ++.. +++|..+.. . .| ..+..|...+
T Consensus 85 l~dA-Gl~~~~~~~~r~Gv-ivGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~~ 162 (398)
T PRK06519 85 LDDA-GIKGNEELLSTMDM-IVAAGGGERDIAVDTAILNEARKRNDRGVLLNERLMTELRPTLFLAQLSNLLAGNISIVH 162 (398)
T ss_pred HHHc-CCCCCCCCccceEE-EEEeCCCchhHHHhhhhhhcccchhHHHHHHHhcCCCccChhhhhhhhhhHHHHHHHHHh
Confidence 9997 98543 3433 444433210 0 11 3567788889
Q ss_pred CCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc--------cCcccccccc-cc-----ccc
Q psy2407 100 GLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFV--------TEDKNELTME-WA-----FFE 165 (245)
Q Consensus 100 Gl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~--------~~~~~~~~~~-~~-----~~~ 165 (245)
|+. -+.+.+..+|+|++.||..|.++|++|.+ +.+||.++|...... ..-......+ +. -..
T Consensus 163 gl~--Gp~~ti~~acaSg~~Ai~~A~~~I~~G~~--d~~lvGG~d~~~~~~~~~~~~~~~~ls~~~~~p~~d~~~~~r~G 238 (398)
T PRK06519 163 KVT--GSSRTFMGEESAGVSAIEIAFARIASGQS--DHALVGGAYNAERPDMLLLYELGGLLLKGGWAPVWSRGGEDGGG 238 (398)
T ss_pred CCC--CccccccCCccHHHHHHHHHHHHHHcCCC--CEEEEeeeccccCHHHHHHHHHcCccCCCCCCchhccCccCCCC
Confidence 994 37889999999999999999999999977 999999998732210 0000000001 00 013
Q ss_pred ccccceeEEEEecC
Q psy2407 166 PSGGAGAVAMLISD 179 (245)
Q Consensus 166 ~~~GDGAaA~ll~~ 179 (245)
++.|+||++++|++
T Consensus 239 ~v~GEGAa~lvLE~ 252 (398)
T PRK06519 239 FILGSGGAFLVLES 252 (398)
T ss_pred eeeeceEEEEEEee
Confidence 56899999999986
No 125
>PRK07937 lipid-transfer protein; Provisional
Probab=98.51 E-value=7.3e-07 Score=80.05 Aligned_cols=91 Identities=18% Similarity=0.050 Sum_probs=67.0
Q ss_pred CCH-HHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCC--cHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407 49 EDP-VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGK--SMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI 125 (245)
Q Consensus 49 e~~-~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p--~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~ 125 (245)
.+. .+|+.+|+++||+++ |++++|||.++.++. +.... .....+...+|+.+..+...+. +++..++..|.
T Consensus 21 ~~~~~el~~eA~~~Al~DA-gl~~~dID~~~~~~~--~~~~~~~~~~~~~~~~~G~~~~~~~~~v~---~~g~~a~~~A~ 94 (352)
T PRK07937 21 TTNGVEMLMPCFAELYAEL-GITKSDIGFWCSGSS--DYLAGRAFSFISAIDSIGAVPPINESHVE---MDAAWALYEAW 94 (352)
T ss_pred CCcHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEcc--ccccccccchhhHHhhccCCCCCceEEec---CcHHHHHHHHH
Confidence 444 899999999999997 999999998864322 22211 1123455668874344444444 35778999999
Q ss_pred HHHhcCCCCCCeEEEEEecccc
Q psy2407 126 NFILSKVSPGAKALVIATDISR 147 (245)
Q Consensus 126 ~~i~sg~~~~~~aLVv~~e~~s 147 (245)
..|++|.+ ++|||++.|+++
T Consensus 95 ~aI~sG~~--d~VLv~g~~k~~ 114 (352)
T PRK07937 95 VKLLTGEV--DTALVYGFGKSS 114 (352)
T ss_pred HHHhcCCC--CEEEEEEecccC
Confidence 99999988 999999999764
No 126
>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A.
Probab=98.41 E-value=2.3e-05 Score=67.83 Aligned_cols=88 Identities=14% Similarity=0.192 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhc
Q psy2407 51 PVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILS 130 (245)
Q Consensus 51 ~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~s 130 (245)
...|..+|++.||+++ ++.++|||.++-+--.. +. ..+++.++.|++ |.+.+=.+|+++..+|.+|..++.+
T Consensus 51 E~~m~~~A~~~al~Ka-~l~~~dId~~~aGDLln-Q~--i~s~f~ar~l~i----Pf~GlygACST~~e~l~laa~~vdg 122 (329)
T PF07451_consen 51 ESKMQKEAVELALKKA-GLKKEDIDYLFAGDLLN-QI--ISSSFAARDLGI----PFLGLYGACSTMMESLALAAMLVDG 122 (329)
T ss_dssp HHHHHHHHHHHHHHHT-T--GGG-SEEEEEETTC-CC--CHHHHHHHHHT------EEEB--CCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc-CCCHHHCeEEEehhhhh-hh--HHHHHHHHhcCC----CccchhhHHHHHHHHHHHHHHHHhC
Confidence 4678999999999997 99999999998664432 22 347788999998 4678889999999999999999999
Q ss_pred CCCCCCeEEEEEeccccc
Q psy2407 131 KVSPGAKALVIATDISRF 148 (245)
Q Consensus 131 g~~~~~~aLVv~~e~~s~ 148 (245)
|.. +++|+.++-....
T Consensus 123 g~a--~~vla~tSSH~~t 138 (329)
T PF07451_consen 123 GFA--DYVLAATSSHFAT 138 (329)
T ss_dssp TS---SEEEEEEEE-CCH
T ss_pred CCc--ceEEEEeccccch
Confidence 977 9999998876643
No 127
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=98.41 E-value=8.9e-06 Score=88.29 Aligned_cols=83 Identities=17% Similarity=0.111 Sum_probs=62.3
Q ss_pred HHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc-----------ccCccccccc
Q psy2407 91 MSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF-----------VTEDKNELTM 159 (245)
Q Consensus 91 ~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~-----------~~~~~~~~~~ 159 (245)
.+.+|...|||+ -+.+.|..+|+|++.||++|.+.|++|.+ +.+|+.+++..... +..++ +..
T Consensus 185 ~A~RIS~~f~L~--Gps~tVdtACsSSL~Al~~A~~~L~~G~~--D~alvGGv~~~~~p~~~~~fs~~~~lS~~g--~cr 258 (2582)
T TIGR02813 185 ISGRIANRFDLG--GMNCVVDAACAGSLAAIRMALSELLEGRS--EMMITGGVCTDNSPFMYMSFSKTPAFTTNE--DIQ 258 (2582)
T ss_pred HHHHHHHHhCCC--CCcccccchhHHHHHHHHHHHHHHHcCCC--CEEEEecceeeCCHHHHHHHHhccCcCCCC--Ccc
Confidence 477889999994 37889999999999999999999999977 99999998764221 11111 111
Q ss_pred cccc--ccccccceeEEEEecC
Q psy2407 160 EWAF--FEPSGGAGAVAMLISD 179 (245)
Q Consensus 160 ~~~~--~~~~~GDGAaA~ll~~ 179 (245)
++.. ..++.|+|+++++|.+
T Consensus 259 pFD~~adG~v~GEGag~vvLkr 280 (2582)
T TIGR02813 259 PFDIDSKGMMIGEGIGMMALKR 280 (2582)
T ss_pred CCCCCCCcccccceEEEEEeCc
Confidence 2211 2467999999999986
No 128
>COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.22 E-value=5.2e-05 Score=69.31 Aligned_cols=126 Identities=15% Similarity=0.129 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHHHhcCCCC-cCCcC---EEEEEeccCC----------------------CC----CC-cHHHHHHHH
Q psy2407 50 DPVSFAINAAAPLIDNLSNID-KNSIE---LIITCSESGI----------------------DF----GK-SMSTYIHHY 98 (245)
Q Consensus 50 ~~~~la~~Aa~~aL~~a~g~~-~~dId---~li~~t~~~~----------------------~~----~p-~~a~~l~~~ 98 (245)
....++..|+.+||+++ |++ ..+.+ .+++++..+. +. ++ ..+..++..
T Consensus 70 ~~~~~a~~Aa~eAl~dA-gl~~~~~~~~r~gv~iGsg~gg~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~vs~~ 148 (412)
T COG0304 70 RFSQLAVVAAVEALEDA-GLDNELNVDMRVGVAIGSGIGGLEDIEFDLDALLLEGLRKRISPFLVPKMLPNLAAGNVAIV 148 (412)
T ss_pred HHHHHHHHHHHHHHHHc-CCCcccccCccEEEEEeccCCCcchhhhHHHHHHhcCCccCcCchhhhhhccchHHHHHHHH
Confidence 46789999999999997 997 33332 1223332211 00 12 346677888
Q ss_pred cCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccc-ccc----------c-c-Ccccccc-ccccc-
Q psy2407 99 LGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDIS-RFF----------V-T-EDKNELT-MEWAF- 163 (245)
Q Consensus 99 LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~-s~~----------~-~-~~~~~~~-~~~~~- 163 (245)
+|+. -+.+.+..+|+++..++..|.++|+.|.. +.+|+.++|.. +.. + . .++|.+. .|+..
T Consensus 149 ~g~~--G~~~~~~tACatg~~AIg~A~~~I~~G~a--d~~iaGG~e~~i~~~~i~gF~am~Alst~nd~p~~asrPfd~~ 224 (412)
T COG0304 149 FGLK--GPNYTPVTACATGAHAIGDAVRLIRLGKA--DVVIAGGAEAAITPLGIAGFEAMRALSTRNDDPEKASRPFDKN 224 (412)
T ss_pred hCCC--CCcCChhhhHHhHHHHHHHHHHHHHcCCC--CEEEEcccccccCHHHHHHHHHHHHhccCCCCccccCCCCCCC
Confidence 9984 47788999999999999999999999976 99999999772 111 0 0 1111111 12211
Q ss_pred -ccccccceeEEEEecCC
Q psy2407 164 -FEPSGGAGAVAMLISDK 180 (245)
Q Consensus 164 -~~~~~GDGAaA~ll~~~ 180 (245)
..+++|.||+++||++.
T Consensus 225 RdGfv~gEGag~lVLE~~ 242 (412)
T COG0304 225 RDGFVIGEGAGALVLEEL 242 (412)
T ss_pred CCCEEEecceeEEEecCh
Confidence 13679999999999863
No 129
>KOG1391|consensus
Probab=98.03 E-value=1.2e-05 Score=68.00 Aligned_cols=98 Identities=13% Similarity=0.129 Sum_probs=80.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHc----CCCCCcceeeecCcchhHHHHH
Q psy2407 46 LPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYL----GLNRNCRLFELKQACYSCTAGL 121 (245)
Q Consensus 46 ~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~L----Gl~~~~~~~dv~~~C~~~~~aL 121 (245)
..+.+..||.+.|++.||+.+ ++.++.+|.||++..... .+-+.++.+.. |.|...+++.++.=|.|+++++
T Consensus 23 LKg~~aTdL~~~AakAAL~aa-~v~~e~VD~VI~GNV~aS---SsDgIYl~RHvGL~~GvP~e~pALtiNRLCGSGFQsi 98 (396)
T KOG1391|consen 23 LKGLSATDLGVVAAKAALKAA-NVGAEAVDHVIMGNVLAS---SSDGIYLARHVGLRVGVPKETPALTINRLCGSGFQSI 98 (396)
T ss_pred ccCcchhhHHHHHHHHHHhhc-CCChhhcceEEEeeeeec---cCCceEeeeccccccCCcCccCceeehhhhcccHHHH
Confidence 357889999999999999997 999999999999865421 11233444544 5556688999999999999999
Q ss_pred HHHHHHHhcCCCCCCeEEEEEecccccc
Q psy2407 122 QMAINFILSKVSPGAKALVIATDISRFF 149 (245)
Q Consensus 122 ~~A~~~i~sg~~~~~~aLVv~~e~~s~~ 149 (245)
..+.+-|.-|.. +.+|.-+.|++|..
T Consensus 99 VNgaQ~I~vgea--~ivL~GGtEnMSq~ 124 (396)
T KOG1391|consen 99 VNGAQEICVGEA--EIVLCGGTENMSQA 124 (396)
T ss_pred HhhHHHhhcCcc--eEEEecCccccccC
Confidence 999999999966 89999999999864
No 130
>KOG1392|consensus
Probab=97.87 E-value=1.1e-05 Score=69.18 Aligned_cols=99 Identities=12% Similarity=0.142 Sum_probs=89.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHH
Q psy2407 48 YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINF 127 (245)
Q Consensus 48 ~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~ 127 (245)
+.-+.||+.+|...+|++. .++.+.||.||++|...+....++++..+-..|++...|+..|..+|.|.-.|+-....+
T Consensus 63 dlmphdlar~al~~ll~kt-~lpke~~dyii~gtviqevktsniareaal~agfsdktpahtvtmacissn~amttgmgl 141 (465)
T KOG1392|consen 63 DLMPHDLAREALKALLEKT-KLPKEQLDYIICGTVIQEVKTSNIAREAALLAGFSDKTPAHTVTMACISSNVAMTTGMGL 141 (465)
T ss_pred hhchhHHHHHHHHHHHHhc-cCCHHHhceeeehhhHHHHhcchHHHHHHHhcCCCCCCccceeeeehhccchhhhcccee
Confidence 4567899999999999996 999999999999998776666788999888999987799999999999999999999999
Q ss_pred HhcCCCCCCeEEEEEecccccc
Q psy2407 128 ILSKVSPGAKALVIATDISRFF 149 (245)
Q Consensus 128 i~sg~~~~~~aLVv~~e~~s~~ 149 (245)
|+.|.+ +.++.-+.|.+|+.
T Consensus 142 iatg~~--dvivaggvelmsdv 161 (465)
T KOG1392|consen 142 IATGNA--DVIVAGGVELMSDV 161 (465)
T ss_pred EeeCCc--CEEEEcceeecccC
Confidence 999977 98999999999875
No 131
>KOG1389|consensus
Probab=97.79 E-value=6.4e-05 Score=65.22 Aligned_cols=101 Identities=14% Similarity=0.118 Sum_probs=85.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407 46 LPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI 125 (245)
Q Consensus 46 ~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~ 125 (245)
..+..+-+|...+.+..+++. +++|+.|+-|+++++.........++..+-..|+|..+|...++.-|+||+++.....
T Consensus 56 fkdt~pDeLl~~vl~a~ie~t-~~dp~~igdi~vG~vL~pg~ga~e~R~a~~~ag~P~tvpv~tvNRqCsSGLqaVadiA 134 (435)
T KOG1389|consen 56 FKDTRPDELLAAVLRAVIEKT-NLDPSLIGDIVVGTVLAPGSGASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADIA 134 (435)
T ss_pred cccCChHHHHHHHHHHHHhhc-CCCHHHhcceeeeeccCCCcchHHHHHHHHHcCCCcccchhhhhhhhhhHHHHHHHHH
Confidence 357778899999999999996 9999999999999987543333334444556799877888889999999999999999
Q ss_pred HHHhcCCCCCCeEEEEEecccccc
Q psy2407 126 NFILSKVSPGAKALVIATDISRFF 149 (245)
Q Consensus 126 ~~i~sg~~~~~~aLVv~~e~~s~~ 149 (245)
.-|++|.+ +-.|-.+.|.++..
T Consensus 135 ~~Ir~G~y--dIGla~GvESMt~~ 156 (435)
T KOG1389|consen 135 AKIRAGFY--DIGLAAGVESMTTN 156 (435)
T ss_pred HHHhcCce--eeecccchhhhccc
Confidence 99999988 99999999999765
No 132
>PF08540 HMG_CoA_synt_C: Hydroxymethylglutaryl-coenzyme A synthase C terminal; InterPro: IPR013746 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase. Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the C-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1TXT_D 1TVZ_A 1X9E_B 2HDB_B 3V4X_A 3V4N_C 2P8U_A 2FA0_A 2F9A_A 2F82_A ....
Probab=97.77 E-value=2.3e-05 Score=68.00 Aligned_cols=50 Identities=32% Similarity=0.463 Sum_probs=36.0
Q ss_pred eeccccccccccccccCCCCCC--CcccchhhHHHHHHHHHHHHHHHHHHhc
Q psy2407 187 DIGSNGYYSFEVMDTCRPIPDS--EAGNADLSLLSYLDCCAQSFKEYKKRVQ 236 (245)
Q Consensus 187 ~~~~~g~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 236 (245)
+-...|+|..+++|||+|.... |.|||++|+.||+++++.+|+.|+++..
T Consensus 4 d~~~~~~~m~~~yDFyKP~~~seyP~VDG~~S~~~Yl~ald~~y~~y~~k~~ 55 (282)
T PF08540_consen 4 DRGLRGSHMEHVYDFYKPDLSSEYPVVDGKLSIQCYLDALDKCYKRYKEKVE 55 (282)
T ss_dssp ETTEEEEEE----SEE-BTTT-SS-EE-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCceeehhhchhccCCCCCCCCcEEchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334578888999999998654 6899999999999999999999998863
No 133
>KOG1394|consensus
Probab=97.64 E-value=0.0011 Score=58.65 Aligned_cols=174 Identities=14% Similarity=0.081 Sum_probs=106.9
Q ss_pred CceeEEeEEeEecCCceecHHHHHHHc----CCCh---HHHh----hc-cceee-ee---cCC-C----CCHHHHHHHHH
Q psy2407 1 MIKVGIEAINLYGGSVFIDVIELAKYR----KLDT---VRFE----NL-LMQQK-SV---SLP-Y----EDPVSFAINAA 59 (245)
Q Consensus 1 m~~~~I~~i~~~lP~~~v~~~~~~~~~----~~~~---~~~~----~~-Gi~~r-~~---~~~-~----e~~~~la~~Aa 59 (245)
|..|.|.|+|..-|-.+-....|.+.+ |++. ..++ ++ |.-.| .. +.. + -+...|+..|+
T Consensus 23 ~rRVVITGmG~VTplG~~v~~~w~~Ll~GesGI~~l~~~d~k~~p~~v~g~Ip~f~~e~~~s~~~~r~ms~~~~~al~aa 102 (440)
T KOG1394|consen 23 MRRVVITGMGAVTPLGNGVHTSWRNLLSGESGISSLEGPDYKSIPFTVAGKIPRFSVEDYVSKGDERRMSKFTKLALTAA 102 (440)
T ss_pred ceeEEEeccceeecCCCChHHHHHHhhccccCcccccccccccCcchheeeccccccccccchhhhhhhhHHHHHHHHHH
Confidence 567999999999998764444444332 2211 1111 11 21111 11 000 1 13578999999
Q ss_pred HHHHHhcCCCCcC---CcC----EEEEEeccC---------------------CCCCC-----cHHHHHHHHcCCCCCcc
Q psy2407 60 APLIDNLSNIDKN---SIE----LIITCSESG---------------------IDFGK-----SMSTYIHHYLGLNRNCR 106 (245)
Q Consensus 60 ~~aL~~a~g~~~~---dId----~li~~t~~~---------------------~~~~p-----~~a~~l~~~LGl~~~~~ 106 (245)
++||+++ ++.+. +.| .|.+++.-+ +++.| -.+.+|.-++|+. -+
T Consensus 103 ~eAL~da-~~~~~~~~e~dk~~~GV~iGtgmg~l~~i~e~a~~~~~~g~rrvsPffVPkil~NM~ag~vsm~~gl~--Gp 179 (440)
T KOG1394|consen 103 EEALKDA-GLLDVNLSEEDKEKTGVLIGTGMGDLEDIYETAQNLSEKGYRRVSPFFVPKILTNMAAGYVSMKYGLR--GP 179 (440)
T ss_pred HHHHHhc-CCCCcccchhhhhhhceEeccccccHHHHHHHHHHHHHhcccccCccccchhhcccccchhhhhhcCc--CC
Confidence 9999997 87765 222 233333211 12333 2356888899994 47
Q ss_pred eeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccc-------------Ccccc-ccccccc--ccccccc
Q psy2407 107 LFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVT-------------EDKNE-LTMEWAF--FEPSGGA 170 (245)
Q Consensus 107 ~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~-------------~~~~~-~~~~~~~--~~~~~GD 170 (245)
...++.+|+.+..++--|.++|+.|.. +..|.-++|.+-..+. .++|. -..||.- ..+++|.
T Consensus 180 nhsvSTACATg~h~igda~n~Ir~Gda--DvmlAGgsE~~I~PlslaGF~r~RALSt~nd~P~~aSRPfD~~RdGFVmGE 257 (440)
T KOG1394|consen 180 NHSVSTACATGNHCIGDAFNFIRLGDA--DVMLAGGSEACINPLSLAGFSRARALSTRNDNPQKASRPFDKKRDGFVMGE 257 (440)
T ss_pred chhhHhhhhhccchHHHHHHHHHhCcc--ceeeccCcceeecchhhhhHHHHHHhhhcCCCccccCCCCccCCCceeecc
Confidence 788999999999999999999999966 8888888887633321 11110 0112221 1367999
Q ss_pred eeEEEEecC
Q psy2407 171 GAVAMLISD 179 (245)
Q Consensus 171 GAaA~ll~~ 179 (245)
||+.+++++
T Consensus 258 GagvlvlEe 266 (440)
T KOG1394|consen 258 GAGVLVLEE 266 (440)
T ss_pred ceeEEehHh
Confidence 999999985
No 134
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=96.26 E-value=0.0064 Score=43.35 Aligned_cols=73 Identities=19% Similarity=0.243 Sum_probs=43.6
Q ss_pred HHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee----cCcchhHHHHHHHHHHHHhcCCC-CCCe
Q psy2407 63 IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL----KQACYSCTAGLQMAINFILSKVS-PGAK 137 (245)
Q Consensus 63 L~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv----~~~C~~~~~aL~~A~~~i~sg~~-~~~~ 137 (245)
|+++ |++++|||.++....+ ......+.+.+|+++.....++ +.+|++-..+|..+ ++.|.. ++++
T Consensus 1 L~~~-g~~~~did~~i~hq~~-----~~~~~~~~~~lgi~~~~~~~~~~~~Gn~~sa~~~~~L~~~---~~~g~~~~Gd~ 71 (90)
T PF08541_consen 1 LERA-GLSPDDIDHFIPHQAS-----KKILDSIAKRLGIPPERFPDNLAEYGNTGSASIPINLADA---LEEGRIKPGDR 71 (90)
T ss_dssp HHHT-T--GGGESEEEE-SSS-----HHHHHHHHHHHTS-GGGBE-THHHH-B-GGGHHHHHHHHH---HHTTSSCTTEE
T ss_pred Cccc-cCCHHHCCEEEeCCCC-----HHHHHHHHHHcCCcHHHHHHHHhccCcchhhhHHHHHHHH---HHcCCCCCCCE
Confidence 6786 9999999999975433 3455668899999755433333 24666666666554 443322 5578
Q ss_pred EEEEEec
Q psy2407 138 ALVIATD 144 (245)
Q Consensus 138 aLVv~~e 144 (245)
+|+++.-
T Consensus 72 vl~~~~G 78 (90)
T PF08541_consen 72 VLLVGFG 78 (90)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8888653
No 135
>PF13723 Ketoacyl-synt_2: Beta-ketoacyl synthase, N-terminal domain
Probab=95.40 E-value=0.61 Score=39.14 Aligned_cols=115 Identities=15% Similarity=0.005 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCC---------------CCC---------cHHHHHHHHcCCCCCcc
Q psy2407 51 PVSFAINAAAPLIDNLSNIDKNSIELIITCSESGID---------------FGK---------SMSTYIHHYLGLNRNCR 106 (245)
Q Consensus 51 ~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~---------------~~p---------~~a~~l~~~LGl~~~~~ 106 (245)
...|++.++.+++.+. +++|.+|++|..++. ..| ..+.++.-..|. ..+
T Consensus 34 ~~rla~~~a~~~~~~~-----~~~d~~VfaS~~Gel~~t~~ll~~l~~~~~lSPT~Fs~SVHNA~aG~~sI~~~~--~~~ 106 (218)
T PF13723_consen 34 LSRLALEAALECLAED-----EQPDAIVFASRHGELERTFKLLEALAEEEELSPTAFSQSVHNAAAGYWSIATKN--TGP 106 (218)
T ss_pred HHHHHHHHHHHHHhcc-----CCCCcEEEEeCCCcHHHHHHHHHHHHhCCCcCccchhhhhhhHHHHHHHHHhCC--CCc
Confidence 6778888888888652 467789999876541 122 223333333443 356
Q ss_pred eeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCCCC
Q psy2407 107 LFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPE 182 (245)
Q Consensus 107 ~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~~ 182 (245)
...+..+=.++..||.-|..+++.| . +.||||+.|.......... . + ......--|.|++|+++..
T Consensus 107 ~tal~a~~~sf~~aLleA~~~l~~~-~--~~VLlv~~De~~p~~y~~~--~--~---~~~~~~~~A~al~L~~~~~ 172 (218)
T PF13723_consen 107 NTALAAGEDSFEAALLEAAAQLAEG-A--EPVLLVCYDEPLPEPYQEF--R--P---ERDPPFPYALALVLSPGDS 172 (218)
T ss_pred eEEEecCcchHHHHHHHHHHHHHcC-C--CCEEEEEeCCCCChhhhhc--c--c---ccCCCcCEEEEEEecCCCC
Confidence 6778888899999999999999998 6 8999999998754321110 0 0 0112345788889987653
No 136
>TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative. Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound.
Probab=95.26 E-value=0.055 Score=48.49 Aligned_cols=82 Identities=13% Similarity=0.237 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCccee-----eec-CcchhHHHHHHHH
Q psy2407 51 PVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF-----ELK-QACYSCTAGLQMA 124 (245)
Q Consensus 51 ~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~-----dv~-~~C~~~~~aL~~A 124 (245)
....+.++++++|+++ |++++|||.+++.... +.+-..+.+.||++++.... +++ .++++...+|..+
T Consensus 206 ~~~~~~~~~~~~L~~~-gl~~~did~~i~Hq~~-----~~~~~~~~~~lgl~~ek~~~~~~~~~~GNt~sAsipl~L~~~ 279 (345)
T TIGR00748 206 YFHHVVTAAKGLMEKL-GLTPEDFDYAVFHQPN-----GKFYLVAARMLGFPKEQVKPGLLTPRIGNTYSGATPVGLSAV 279 (345)
T ss_pred HHHHHHHHHHHHHHHc-CCCHHHcCEEEeCCCC-----hHHHHHHHHHcCCCHHHeeccccccccCchhhhHHHHHHHHH
Confidence 4566778899999996 9999999999864332 34556689999996432221 453 4788888888766
Q ss_pred HHHHhcCCCCCCeEEEEE
Q psy2407 125 INFILSKVSPGAKALVIA 142 (245)
Q Consensus 125 ~~~i~sg~~~~~~aLVv~ 142 (245)
...++ +++++|+++
T Consensus 280 ~~~~~----~Gd~vll~~ 293 (345)
T TIGR00748 280 LDIAE----PGDRILAVS 293 (345)
T ss_pred HHhcC----CCCEEEEEE
Confidence 55333 446777664
No 137
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=95.11 E-value=0.11 Score=47.18 Aligned_cols=85 Identities=18% Similarity=0.217 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHc-----CCCCCcceee---ec-CcchhHHHHHHH
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYL-----GLNRNCRLFE---LK-QACYSCTAGLQM 123 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~L-----Gl~~~~~~~d---v~-~~C~~~~~aL~~ 123 (245)
+...++++++|++. |++++|||.++.... .+..-..++++| |++++..... ++ .+|++...+|..
T Consensus 272 ~~~~~~i~~~L~~~-gl~~~DId~~v~Hq~-----n~~~~~~v~~~l~~~~~gl~~~k~~~~~~~~GNt~sAsipi~L~~ 345 (378)
T PRK06816 272 VYTIKPLLELVDKR-NLDPDDIDYFLPHYS-----SEYFREKIVELLAKAGFMIPEEKWFTNLATVGNTGSASIYIMLDE 345 (378)
T ss_pred HHHHHHHHHHHHHc-CCChhhCCEEeeCcc-----cHHHHHHHHHHHHhccCCCChhheEEeccccccccchHHHHHHHH
Confidence 45578888999996 999999999985433 334455667766 8864432222 33 477777778865
Q ss_pred HHHHHhcCCC-CCCeEEEEEeccc
Q psy2407 124 AINFILSKVS-PGAKALVIATDIS 146 (245)
Q Consensus 124 A~~~i~sg~~-~~~~aLVv~~e~~ 146 (245)
+ ++.|.. +++++++++.+..
T Consensus 346 a---~~~g~~~~Gd~vl~~~~~s~ 366 (378)
T PRK06816 346 L---LNSGRLKPGQKILCFVPESG 366 (378)
T ss_pred H---HHcCCCCCCCEEEEEEeccc
Confidence 5 344322 5688888877654
No 138
>PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated
Probab=95.01 E-value=0.074 Score=47.76 Aligned_cols=91 Identities=12% Similarity=-0.021 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEEEE-eccCCCCCCcHHHHHHHHcCCC-CCcce----eeec-CcchhHHHHHHHHH
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELIITC-SESGIDFGKSMSTYIHHYLGLN-RNCRL----FELK-QACYSCTAGLQMAI 125 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li~~-t~~~~~~~p~~a~~l~~~LGl~-~~~~~----~dv~-~~C~~~~~aL~~A~ 125 (245)
+=..++.++||+++ |++++|||.|+.. +.++ +.....+..+.+.+|-. ...+. -.++ .+.+++...+..+.
T Consensus 234 ~gl~~ai~~AL~~a-gl~~~dId~v~ah~~gt~-~~d~~e~~A~~~~f~~~~~~~~~~~~k~~~Gh~~aAaG~~~~~~a~ 311 (348)
T PRK06147 234 DGLTQAIRAALAEA-GCGLEDMDYRIADLNGEQ-YRFKEAALAEMRLFRVRKEFFDLWHPAECIGEIGAAIGPALLGVAL 311 (348)
T ss_pred HHHHHHHHHHHHHc-CCCHHHCCEEEcCCCCCc-cchHHHHHHHHHHhhhccCCCceecchHhhcchHHHHHHHHHHHHH
Confidence 34568899999997 9999999998843 3332 22222344445555531 11222 2233 35566666666677
Q ss_pred HHHhcCCCCCCeEEEEEecc
Q psy2407 126 NFILSKVSPGAKALVIATDI 145 (245)
Q Consensus 126 ~~i~sg~~~~~~aLVv~~e~ 145 (245)
..++.|..|+.++||.+++-
T Consensus 312 ~~~~~g~~~g~~~L~~s~~d 331 (348)
T PRK06147 312 AASRKGYGPGPNVLCHLSDD 331 (348)
T ss_pred HHHHcCcCCCCcEEEEecCC
Confidence 77778766778899987754
No 139
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=94.67 E-value=0.14 Score=45.21 Aligned_cols=81 Identities=20% Similarity=0.229 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee---cC-cchhHHHHHHHHHHHHh
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL---KQ-ACYSCTAGLQMAINFIL 129 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv---~~-~C~~~~~aL~~A~~~i~ 129 (245)
...++.+++|+++ |++++|||.++....+ ...-..+++.||++++.....+ ++ +|++...+|. .+++
T Consensus 231 ~~~~~i~~~L~~~-gl~~~did~~~~H~~~-----~~~~~~i~~~l~l~~e~~~~~~~~~Gn~~sas~~~~L~---~~~~ 301 (329)
T PRK07204 231 YLMKFIDKLLMDA-GYTLADIDLIVPHQAS-----GPAMRLIRKKLGVDEERFVTIFEDHGNMIAASIPVALF---EAIK 301 (329)
T ss_pred HHHHHHHHHHHHc-CCCHHHCCEEEeCCCC-----HHHHHHHHHHcCCCHHHhhhhHhhhCcHHHHHHHHHHH---HHHH
Confidence 4557889999997 9999999999864333 2345688999999654332222 22 4444444443 3455
Q ss_pred cCCC-CCCeEEEEEe
Q psy2407 130 SKVS-PGAKALVIAT 143 (245)
Q Consensus 130 sg~~-~~~~aLVv~~ 143 (245)
.|.. +++++|+++.
T Consensus 302 ~g~~~~Gd~vll~~~ 316 (329)
T PRK07204 302 QKKVQRGNKILLLGT 316 (329)
T ss_pred cCCCCCCCEEEEEEE
Confidence 5432 5577777753
No 140
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=94.59 E-value=0.14 Score=45.39 Aligned_cols=81 Identities=16% Similarity=0.164 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee---c-CcchhHHHHHHHHHHHHh
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL---K-QACYSCTAGLQMAINFIL 129 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv---~-~~C~~~~~aL~~A~~~i~ 129 (245)
...++++++|+++ |++++|||++++.... +..-..+++.||++++.....+ + .+|++...+|.. +++
T Consensus 227 ~~~~~i~~~L~~~-g~~~~did~~~~hq~~-----~~~~~~~~~~lgl~~~k~~~~l~~~Gn~~sasi~~~L~~---~~~ 297 (326)
T CHL00203 227 QVPAVIIKCLNAL-NISIDEVDWFILHQAN-----KRILEAIANRLSVPNSKMITNLEKYGNTSAASIPLALDE---AIQ 297 (326)
T ss_pred HHHHHHHHHHHHc-CCCHHHCCEEEECCCC-----HHHHHHHHHHhCCCHHHhhhHHHhhCcHHHHHHHHHHHH---HHH
Confidence 3555788999996 9999999999864332 3456678999999754333333 2 245555555543 345
Q ss_pred cCCC-CCCeEEEEEe
Q psy2407 130 SKVS-PGAKALVIAT 143 (245)
Q Consensus 130 sg~~-~~~~aLVv~~ 143 (245)
.|.. +++++|+++.
T Consensus 298 ~g~~~~Gd~vll~~~ 312 (326)
T CHL00203 298 NNKIQPGQIIVLSGF 312 (326)
T ss_pred hCCCCCCCEEEEEEE
Confidence 5432 5577877764
No 141
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=94.26 E-value=0.2 Score=44.17 Aligned_cols=81 Identities=14% Similarity=0.193 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee---c-CcchhHHHHHHHHHHHHh
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL---K-QACYSCTAGLQMAINFIL 129 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv---~-~~C~~~~~aL~~A~~~i~ 129 (245)
...++.+++|+++ |++++|||.+++... .+..-..+++.||+++......+ + .+|++...+|. .+++
T Consensus 226 ~~~~~i~~~L~~~-g~~~~did~~~~h~~-----~~~~~~~~~~~lg~~~~~~~~~~~~~Gn~~sas~~~~L~---~~~~ 296 (325)
T PRK12879 226 TMPKGARQVLEKA-GLTKDDIDWVIPHQA-----NLRIIESLCEKLGIPMEKTLVSVEYYGNTSAATIPLALD---LALE 296 (325)
T ss_pred HHHHHHHHHHHHc-CCCHHHCCEEEECCC-----CHHHHHHHHHHcCCCHHHhhhhHhhhCchHHHHHHHHHH---HHHH
Confidence 3456788999996 999999999986532 34556688999999644332223 2 24555555554 4455
Q ss_pred cCCC-CCCeEEEEEe
Q psy2407 130 SKVS-PGAKALVIAT 143 (245)
Q Consensus 130 sg~~-~~~~aLVv~~ 143 (245)
.|.. +++++|+++.
T Consensus 297 ~g~~~~Gd~vll~~~ 311 (325)
T PRK12879 297 QGKIKPGDTLLLYGF 311 (325)
T ss_pred cCCCCCCCEEEEEEE
Confidence 5432 4577777765
No 142
>KOG1202|consensus
Probab=94.11 E-value=0.15 Score=52.08 Aligned_cols=126 Identities=17% Similarity=0.149 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHHHHhcCCCCcCCcCE----EEEEeccCCCC-----CC---------c-HHHHHHHHc----CCCCCcc
Q psy2407 50 DPVSFAINAAAPLIDNLSNIDKNSIEL----IITCSESGIDF-----GK---------S-MSTYIHHYL----GLNRNCR 106 (245)
Q Consensus 50 ~~~~la~~Aa~~aL~~a~g~~~~dId~----li~~t~~~~~~-----~p---------~-~a~~l~~~L----Gl~~~~~ 106 (245)
....|..++.-+|+-++ |+.|.++.. ++++.+++... .| . .-++.++++ .+ .-|
T Consensus 86 Pq~RlLLE~t~EAivDa-GiNP~~LRGs~tGv~vg~s~seTs~~~~~dp~t~~Gy~mtgc~raMfaNRiSytFDf--qGP 162 (2376)
T KOG1202|consen 86 PQLRLLLEATWEAIVDA-GINPDDLRGSRTGVFVGVSGSETSGALSQDPDTVNGYSMTGCVRAMFANRISYTFDF--QGP 162 (2376)
T ss_pred HHHHHHHHHHHHHHHhC-CCChhhcCcccceeEEeecCccccccccCCCccccceeecccHHHHhhcceeEEEec--cCC
Confidence 45789999999999997 999977643 33333222110 11 1 112334443 34 246
Q ss_pred eeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc-----------cCcccccccccccccccccceeEEE
Q psy2407 107 LFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFV-----------TEDKNELTMEWAFFEPSGGAGAVAM 175 (245)
Q Consensus 107 ~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~-----------~~~~~~~~~~~~~~~~~~GDGAaA~ 175 (245)
.|.+..+|+|.+.+|..|.+-+++|++ +.+||-++...-+.. .+++.=+.-...-..+.-.||.+|+
T Consensus 163 S~s~DtacsSsl~al~~a~~~~r~gqc--d~AiVaG~~liLkPt~slQFlRLgmls~dGsCkaFDeagnGY~Rseg~~av 240 (2376)
T KOG1202|consen 163 SFSVDTACSSSLMALQNAFQDIRSGQC--DAAIVAGANLILKPTTSLQFLRLGMLSPDGSCKAFDEAGNGYCRSEGVVAV 240 (2376)
T ss_pred chhhhhhhHHHHHHHHHHHHhhhccCC--chhhhcccceEeccchhhHHHHhcCcCCCCcccchhccCCceeecCceEEE
Confidence 778889999999999999999999977 999998877543221 1111000000000123467999999
Q ss_pred EecCC
Q psy2407 176 LISDK 180 (245)
Q Consensus 176 ll~~~ 180 (245)
++.+.
T Consensus 241 llqrk 245 (2376)
T KOG1202|consen 241 LLQRK 245 (2376)
T ss_pred EEehh
Confidence 99875
No 143
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=94.04 E-value=0.24 Score=43.89 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee---c-CcchhHHHHHHHHHHHH
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL---K-QACYSCTAGLQMAINFI 128 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv---~-~~C~~~~~aL~~A~~~i 128 (245)
....++.+++|+++ |++++|||.+++... .+..-..+.+.||++++.....+ + .++++-..+|.. ++
T Consensus 239 ~~~~~~~~~~L~~~-g~~~~did~~i~H~~-----~~~~~~~~~~~lgl~~~k~~~~~~~~GN~~sas~~~~L~~---~~ 309 (338)
T PRK09258 239 ELAVDTWEAFLAQL-GWAVEQVDRVICHQV-----GAAHTRAILKALGIDPEKVFTTFPTLGNMGPASLPITLAM---AA 309 (338)
T ss_pred HHHHHHHHHHHHHc-CCCHHHCCEEecCCC-----CHHHHHHHHHHhCCCHHHceehHhhhCCcHHhHHHHHHHH---HH
Confidence 45566788999996 999999999886433 23455688999999654333232 2 355555555544 34
Q ss_pred hcCCC-CCCeEEEEEecc
Q psy2407 129 LSKVS-PGAKALVIATDI 145 (245)
Q Consensus 129 ~sg~~-~~~~aLVv~~e~ 145 (245)
+.|.. +++++|+++...
T Consensus 310 ~~g~~~~Gd~vll~~~G~ 327 (338)
T PRK09258 310 EEGFLKPGDRVALLGIGS 327 (338)
T ss_pred HhCCCCCCCEEEEEEech
Confidence 44422 567888877543
No 144
>PRK06840 hypothetical protein; Validated
Probab=93.83 E-value=0.27 Score=43.65 Aligned_cols=81 Identities=10% Similarity=0.072 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcc-ee-eec-CcchhHHHHHHHHHHHHhc
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCR-LF-ELK-QACYSCTAGLQMAINFILS 130 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~-~~-dv~-~~C~~~~~aL~~A~~~i~s 130 (245)
...++.+++|+++ |++++|||.++.... .+..-..+++.||+++... .+ +++ .++++-..+|. .++++
T Consensus 238 ~~~~~i~~~L~~~-gl~~~did~~~~h~~-----~~~~~~~~~~~Lgl~~~~~~~~~~~Gn~~sas~~~~L~---~~~~~ 308 (339)
T PRK06840 238 NFLKVIREALRKS-GYTPKDIDYLAILHM-----KRSAHIALLEGLGLTEEQAIYLDEYGHLGQLDQILSLH---LALEQ 308 (339)
T ss_pred HHHHHHHHHHHHc-CCCHHHCCEEEECCc-----CHHHHHHHHHHcCCCHHHeEeHHhccchhhhhHHHHHH---HHHHc
Confidence 3458889999997 999999999875332 2344467899999964322 11 232 24444444553 44555
Q ss_pred CCC-CCCeEEEEEe
Q psy2407 131 KVS-PGAKALVIAT 143 (245)
Q Consensus 131 g~~-~~~~aLVv~~ 143 (245)
|.. +++++|+++.
T Consensus 309 ~~~~~Gd~ill~~~ 322 (339)
T PRK06840 309 GKLKDGDLVVLVSA 322 (339)
T ss_pred CCCCCCCEEEEEEE
Confidence 422 5577777765
No 145
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=93.81 E-value=0.16 Score=44.66 Aligned_cols=82 Identities=12% Similarity=0.141 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee---c-CcchhHHHHHHHHHHHH
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL---K-QACYSCTAGLQMAINFI 128 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv---~-~~C~~~~~aL~~A~~~i 128 (245)
+...++.+++|+++ |++++|||.+++... .+..-..+++.||++++.....+ + .++++-+.+|.. ++
T Consensus 219 ~~~~~~~~~~l~~~-g~~~~di~~~~~h~~-----~~~~~~~~~~~lgi~~~k~~~~~~~~Gn~~sas~~~~L~~---~~ 289 (318)
T TIGR00747 219 RKMGDVVEETLEAN-GLDPEDIDWFVPHQA-----NLRIIEALAKRLELDMSQVVKTVHKYGNTSAASIPLALDE---LL 289 (318)
T ss_pred HHHHHHHHHHHHHc-CCCHHHCCEEEECCC-----CHHHHHHHHHHcCCCHHHeeehHhhhCCHHHHHHHHHHHH---HH
Confidence 34566788899997 999999999985432 33556788999999643222223 2 355555555544 44
Q ss_pred hcCCC-CCCeEEEEEe
Q psy2407 129 LSKVS-PGAKALVIAT 143 (245)
Q Consensus 129 ~sg~~-~~~~aLVv~~ 143 (245)
++|.. +++++|+++.
T Consensus 290 ~~~~~~~Gd~vll~~~ 305 (318)
T TIGR00747 290 RTGRIKPGDLLLLVAF 305 (318)
T ss_pred HcCCCCCCCEEEEEEE
Confidence 44421 4577877765
No 146
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=93.75 E-value=0.29 Score=43.22 Aligned_cols=83 Identities=13% Similarity=0.150 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee---c-CcchhHHHHHHHHHHH
Q psy2407 52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL---K-QACYSCTAGLQMAINF 127 (245)
Q Consensus 52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv---~-~~C~~~~~aL~~A~~~ 127 (245)
.+...++.+++|+++ |++++|||.++... ..+..-..+.+.||+++......+ + .++++...+|. .+
T Consensus 226 ~~~~~~~~~~~L~~~-gl~~~did~~~~h~-----~~~~~~~~~~~~l~l~~~k~~~~l~~~Gn~~sas~~~~L~---~~ 296 (326)
T PRK05963 226 VRMMSGASQNVLASA-AMTPQDIDRFFPHQ-----ANARIVDKVCETIGIPRAKAASTLETYGNSSAATIPLSLS---LA 296 (326)
T ss_pred HHHHHHHHHHHHHHc-CCCHHHCCEEEeCC-----CCHHHHHHHHHHcCCCHHHhhhhHHhhCcHHHHHHHHHHH---HH
Confidence 345567888999996 99999999988632 234556678999999654333222 2 24444444443 33
Q ss_pred HhcCCC-CCCeEEEEEe
Q psy2407 128 ILSKVS-PGAKALVIAT 143 (245)
Q Consensus 128 i~sg~~-~~~~aLVv~~ 143 (245)
++.+.. +++++|+++.
T Consensus 297 ~~~~~~~~Gd~vll~~~ 313 (326)
T PRK05963 297 NLEQPLREGERLLFAAA 313 (326)
T ss_pred HHhCCCCCCCEEEEEEE
Confidence 444322 4578888765
No 147
>PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III
Probab=93.29 E-value=0.38 Score=43.66 Aligned_cols=81 Identities=11% Similarity=0.113 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee---c-CcchhHHHHHHHHHHHHh
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL---K-QACYSCTAGLQMAINFIL 129 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv---~-~~C~~~~~aL~~A~~~i~ 129 (245)
...++++++|+++ |++++|||.++.... .+.+-..+++.||++++.....+ + .++++-..+|.. +++
T Consensus 281 ~~~~~i~~~L~~~-gl~~~dId~~v~Hq~-----n~~~~~~~~~~Lgl~~ek~~~~l~~~GNt~sAsi~~~L~~---~~~ 351 (379)
T PLN02326 281 CVPQVIESALQKA-GLTAESIDWLLLHQA-----NQRIIDAVAQRLGIPPEKVISNLANYGNTSAASIPLALDE---AVR 351 (379)
T ss_pred HHHHHHHHHHHHc-CCCHHHCCEEEECCC-----CHHHHHHHHHHcCCCHHHeeecHhhcCcHHHHHHHHHHHH---HHH
Confidence 3446778889996 999999999886433 23445568999999754333333 2 355555556644 345
Q ss_pred cCCC-CCCeEEEEEe
Q psy2407 130 SKVS-PGAKALVIAT 143 (245)
Q Consensus 130 sg~~-~~~~aLVv~~ 143 (245)
.|.. +++++|+++.
T Consensus 352 ~g~~~~Gd~vll~~~ 366 (379)
T PLN02326 352 SGKVKKGDVIATAGF 366 (379)
T ss_pred cCCCCCCCEEEEEEE
Confidence 4432 4577877754
No 148
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=93.27 E-value=0.19 Score=44.69 Aligned_cols=83 Identities=14% Similarity=0.184 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeec----CcchhHHHHHHHHHH
Q psy2407 51 PVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK----QACYSCTAGLQMAIN 126 (245)
Q Consensus 51 ~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~----~~C~~~~~aL~~A~~ 126 (245)
+..+..++++++|+++ +++++|||.++. .+....+-..++++||++++.....+. .+-+|-..+|. .
T Consensus 221 av~~~~~~~~~~L~~~-~l~~~dId~~vp-----HQan~ri~~~i~~~l~~~~~k~~~~~~~yGNtsaAsiplaL~---~ 291 (323)
T COG0332 221 AVRAMPKAIEEVLEKA-GLTPEDIDWFVP-----HQANLRIIEAIAKKLGIPEEKVVVTVDKYGNTSAASIPLALD---E 291 (323)
T ss_pred HHHHHHHHHHHHHHHc-CCCHHHCCEEcc-----ccccHHHHHHHHHHcCCCHHHHhhHHHHhcccccchHHHHHH---H
Confidence 5678888899999997 999999999984 344446667889999997665555553 23333333443 3
Q ss_pred HHhcCCC-CCCeEEEEE
Q psy2407 127 FILSKVS-PGAKALVIA 142 (245)
Q Consensus 127 ~i~sg~~-~~~~aLVv~ 142 (245)
+++.|+. +++.+|+++
T Consensus 292 ~~~~g~ik~Gd~ill~~ 308 (323)
T COG0332 292 ALREGRIKPGDLVLLEA 308 (323)
T ss_pred HhhhCCCCCCCEEEEEe
Confidence 4455544 334555443
No 149
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=93.16 E-value=0.35 Score=42.35 Aligned_cols=82 Identities=12% Similarity=0.174 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee---cC-cchhHHHHHHHHHHHH
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL---KQ-ACYSCTAGLQMAINFI 128 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv---~~-~C~~~~~aL~~A~~~i 128 (245)
+...++.+++|+++ |++++|||.++.... .+..-..+++.||+++......+ ++ ++++....|. .++
T Consensus 223 ~~~~~~i~~~l~~~-g~~~~di~~~~~h~~-----~~~~~~~~~~~lgl~~~~~~~~~~~~Gn~~sas~~~~L~---~~~ 293 (320)
T cd00830 223 RLMPESIEEALEKA-GLTPDDIDWFVPHQA-----NLRIIEAVAKRLGLPEEKVVVNLDRYGNTSAASIPLALD---EAI 293 (320)
T ss_pred HhhHHHHHHHHHHc-CCCHHHCCEEEECCC-----CHHHHHHHHHHhCCCHHHhhhhHHhhCcHHHHHHHHHHH---HHH
Confidence 45567888999997 999999999886533 33455678999999644332223 22 3444444443 344
Q ss_pred hcCCC-CCCeEEEEEe
Q psy2407 129 LSKVS-PGAKALVIAT 143 (245)
Q Consensus 129 ~sg~~-~~~~aLVv~~ 143 (245)
+.|.. +++++|+++.
T Consensus 294 ~~~~~~~G~~vll~~~ 309 (320)
T cd00830 294 EEGKLKKGDLVLLLGF 309 (320)
T ss_pred HcCCCCCCCEEEEEEE
Confidence 55432 4678888765
No 150
>PRK04262 hypothetical protein; Provisional
Probab=92.81 E-value=0.25 Score=44.18 Aligned_cols=80 Identities=19% Similarity=0.304 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcce--e---eec-CcchhHHHHHHHHH
Q psy2407 52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL--F---ELK-QACYSCTAGLQMAI 125 (245)
Q Consensus 52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~--~---dv~-~~C~~~~~aL~~A~ 125 (245)
.....++.+++|+++ |++++|||.+++.. ..+.+-..+++.||+++.... + +++ .++++-..+|..+.
T Consensus 208 ~~~~~~~i~~~L~~~-gl~~~dId~~v~Hq-----~n~~~~~~~~~~Lgl~~ek~~~~~~~~~~GNt~sAsi~~~L~~~~ 281 (347)
T PRK04262 208 FKHIISAAKGLMEKL-GLKPSDYDYAVFHQ-----PNGKFPLRVAKMLGFTKEQVKPGLLTPYIGNTYSGSALLGLAAVL 281 (347)
T ss_pred HHHHHHHHHHHHHHh-CcCHHHhceeecCC-----CchHHHHHHHHHcCCCHHHhhccchhhhhCChHHHHHHHHHHHHH
Confidence 356778899999997 99999999988642 223455678899999654322 1 333 36666666665554
Q ss_pred HHHhcCCCCCCeEEEE
Q psy2407 126 NFILSKVSPGAKALVI 141 (245)
Q Consensus 126 ~~i~sg~~~~~~aLVv 141 (245)
.-+ . +++++|++
T Consensus 282 ~~~--~--~Gd~vll~ 293 (347)
T PRK04262 282 DVA--K--PGDRILVV 293 (347)
T ss_pred HhC--C--CCCEEEEE
Confidence 322 2 44666655
No 151
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=92.61 E-value=0.76 Score=40.33 Aligned_cols=78 Identities=6% Similarity=-0.067 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcc----eeeec-CcchhHHHHHHHHHH
Q psy2407 52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCR----LFELK-QACYSCTAGLQMAIN 126 (245)
Q Consensus 52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~----~~dv~-~~C~~~~~aL~~A~~ 126 (245)
.+...++++++|+++ |++++|||.++...........-....+....+.. ..+ .-.++ .++++++..|..+..
T Consensus 204 ~~~~~~~i~~al~~a-gl~~~did~~~~h~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~G~~~aas~~~~l~~~~~ 281 (332)
T cd00825 204 AEGLARAAKEALAVA-GLTVWDIDYLVAHGTGTPIGDVKELKLLRSEFGDK-SPAVSATKAMTGNLSSAAVVLAVDEAVL 281 (332)
T ss_pred HHHHHHHHHHHHHHc-CCCHhHCCEEEccCCCCCCCCHHHHHHHHHHhCCC-CceeECCCcccccchhHhHHHHHHHHHH
Confidence 455668999999997 99999999999765543222222222333334321 111 12343 477788888888777
Q ss_pred HHhcC
Q psy2407 127 FILSK 131 (245)
Q Consensus 127 ~i~sg 131 (245)
.++.+
T Consensus 282 ~~~~~ 286 (332)
T cd00825 282 MLEHG 286 (332)
T ss_pred HHhcC
Confidence 76655
No 152
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=92.26 E-value=0.58 Score=41.01 Aligned_cols=81 Identities=11% Similarity=0.070 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceee---ec-CcchhHHHHHHHHHHHHh
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFE---LK-QACYSCTAGLQMAINFIL 129 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~d---v~-~~C~~~~~aL~~A~~~i~ 129 (245)
...++.+++|+++ |++++|||.++.... .+..-..+.+.||+++...... .+ .+|++-+..| ..+++
T Consensus 220 ~~~~~i~~~l~~~-g~~~~di~~~~~h~~-----~~~~~~~~~~~lg~~~~~~~~~~~~~Gn~~~a~~~~~L---~~~~~ 290 (319)
T PRK09352 220 ELAKVAREALEAA-GLTPEDIDWLVPHQA-----NLRIIDATAKKLGLPMEKVVVTVDKYGNTSAASIPLAL---DEAVR 290 (319)
T ss_pred HHHHHHHHHHHHc-CCCHHHCCEEEECCC-----CHHHHHHHHHHhCCCHHHhhhhHHhhCCHHHHHHHHHH---HHHHH
Confidence 3456888899996 999999999986432 3345567899999965432222 22 2444444444 34455
Q ss_pred cCCC-CCCeEEEEEe
Q psy2407 130 SKVS-PGAKALVIAT 143 (245)
Q Consensus 130 sg~~-~~~~aLVv~~ 143 (245)
.|.. +++++|+++.
T Consensus 291 ~g~~~~Gd~vll~s~ 305 (319)
T PRK09352 291 DGRIKRGDLVLLEGF 305 (319)
T ss_pred cCCCCCCCEEEEEEE
Confidence 5422 4577887765
No 153
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=91.61 E-value=0.45 Score=42.97 Aligned_cols=82 Identities=6% Similarity=0.100 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHH-cCCCC--Cc-c-eee-e-cCcchhHHHHHHHH
Q psy2407 52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHY-LGLNR--NC-R-LFE-L-KQACYSCTAGLQMA 124 (245)
Q Consensus 52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~-LGl~~--~~-~-~~d-v-~~~C~~~~~aL~~A 124 (245)
.+...++.+++|+++ |++++|||.++...... .+-..+.+. ||+.. .. + .++ . |.+|++...+|..+
T Consensus 270 ~~~~~~~i~~~L~~~-gl~~~dId~~~~Hq~~~-----~~~d~~~~~llg~~~~~~~~~~~~~~~GNt~sasi~~~L~~~ 343 (372)
T PRK07515 270 CPMVAEHIVEHLAEN-GLTPADVKRFWLHQANI-----NMNQLIGKKVLGRDATPEEAPVILDEYANTSSAGSIIAFHKH 343 (372)
T ss_pred HHHHHHHHHHHHHHc-CCCHHHCCEEEECCCCH-----HHHHHHHHHhccCCCChhhceEeHHhcCCchhhHHHHHHHHH
Confidence 344678899999996 99999999998643322 222334555 67532 11 1 222 3 34777777777766
Q ss_pred HHHHhcCCCCCCeEEEEEe
Q psy2407 125 INFILSKVSPGAKALVIAT 143 (245)
Q Consensus 125 ~~~i~sg~~~~~~aLVv~~ 143 (245)
...++ +++++|+++.
T Consensus 344 ~~~~~----~Gd~vll~~~ 358 (372)
T PRK07515 344 SDDLA----AGDLGVICSF 358 (372)
T ss_pred hccCC----CCCEEEEEEe
Confidence 44332 4577777764
No 154
>PRK08257 acetyl-CoA acetyltransferase; Validated
Probab=91.56 E-value=1 Score=42.49 Aligned_cols=82 Identities=17% Similarity=0.141 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCC-cceeeecC-----c---chhHHHHHHH
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRN-CRLFELKQ-----A---CYSCTAGLQM 123 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~-~~~~dv~~-----~---C~~~~~aL~~ 123 (245)
.....|+++|++++ |++++|||++-+..+++ .......+.||+.++ -..+.++. | .++++..+..
T Consensus 292 ~~~~~aa~~a~~~A-Gi~~~Did~~elydcF~-----~~~~~~~E~LGl~~~g~~pvN~sGGl~s~G~P~~a~g~~~i~E 365 (498)
T PRK08257 292 PAIRAAGRRALALA-GLGIDDIDAFDLYSCFP-----SAVQVAARELGLDLDDPRPLTVTGGLPFFGGPGNNYVTHAIAE 365 (498)
T ss_pred hHHHHHHHHHHHHh-CCCHHHCCEEEeccCCH-----HHHHHHHHHcCcCCCCCCCcCCCcChhhcCCchhhHHHHHHHH
Confidence 34457999999997 99999999997766643 334455688998533 11233322 2 2224444444
Q ss_pred HHHHHhcCCCCCCeEEEEE
Q psy2407 124 AINFILSKVSPGAKALVIA 142 (245)
Q Consensus 124 A~~~i~sg~~~~~~aLVv~ 142 (245)
+...|+.. +.+++|+.+
T Consensus 366 ~v~QLRg~--~~~~gLv~~ 382 (498)
T PRK08257 366 MVERLRAN--PGRRGLVTA 382 (498)
T ss_pred HHHHHhhc--CCCEEEEEC
Confidence 45555543 235666654
No 155
>PRK07937 lipid-transfer protein; Provisional
Probab=90.62 E-value=1.5 Score=39.53 Aligned_cols=37 Identities=16% Similarity=0.103 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 57 NAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 57 ~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
.|++++ + |++++|||++-+.-+ ++.......+.||+.
T Consensus 254 ~a~~~a---A-gi~~~diD~~Ei~D~-----F~~~~l~~~e~lGl~ 290 (352)
T PRK07937 254 LAAEAA---T-GGDAGGVDVAELHAP-----FTHQELILREALGLG 290 (352)
T ss_pred HHHHHh---c-CCCHHHCCEEEEeCC-----ChHHHHHHHHHcCCC
Confidence 344444 5 999999999865433 334445567889984
No 156
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=89.87 E-value=2 Score=36.01 Aligned_cols=80 Identities=9% Similarity=-0.078 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC---CCcceeeec-CcchhHHHHHHHHHH
Q psy2407 51 PVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN---RNCRLFELK-QACYSCTAGLQMAIN 126 (245)
Q Consensus 51 ~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~---~~~~~~dv~-~~C~~~~~aL~~A~~ 126 (245)
......++++++|+++ |++++|||.++.....................+.. .....-.++ .++++++..|..+..
T Consensus 143 ~~~~~~~~i~~~l~~a-g~~~~did~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~as~~~~l~~~~~ 221 (254)
T cd00327 143 SGEGLARAARKALEGA-GLTPSDIDYVEAHGTGTPIGDAVELALGLDPDGVRSPAVSATLIMTGHPLGAAGLAILDELLL 221 (254)
T ss_pred ChHHHHHHHHHHHHHc-CCCHHHCCEEEccCCcCccccHHHHHHHHHHhCCCCCceeccccccccchHHHHHHHHHHHHH
Confidence 4567788999999997 99999999988654433222111111111112221 011112343 466777777766666
Q ss_pred HHhcC
Q psy2407 127 FILSK 131 (245)
Q Consensus 127 ~i~sg 131 (245)
.++.+
T Consensus 222 ~~~~~ 226 (254)
T cd00327 222 MLEHE 226 (254)
T ss_pred HHhCC
Confidence 55543
No 157
>PRK09052 acetyl-CoA acetyltransferase; Provisional
Probab=89.47 E-value=1 Score=41.26 Aligned_cols=71 Identities=10% Similarity=0.049 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCc---c----eeeecCcchhHHHHHHHHHH
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNC---R----LFELKQACYSCTAGLQMAIN 126 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~---~----~~dv~~~C~~~~~aL~~A~~ 126 (245)
-...|+++||+++ |++++|||++-+. +.+........+.||+.+.. . ++..-.|++|....+..+.+
T Consensus 298 ~~~~A~~~al~~A-gi~~~did~~ei~-----D~f~~~~l~~~e~lg~~~~~vN~~GG~la~GHp~gasG~~~~~~~~~~ 371 (399)
T PRK09052 298 GPIEAIPAALKQA-GLKQDDLDWIELN-----EAFAAQSLAVIRDLGLDPSKVNPLGGAIALGHPLGATGAIRTATVVHG 371 (399)
T ss_pred hHHHHHHHHHHHc-CCCHHHcCEEEeC-----cHHHHHHHHHHHHhCCCCcccCCCCchhhcCchHHHHHHHHHHHHHHH
Confidence 4478999999997 9999999988632 12223344556778873210 0 12222355555556666555
Q ss_pred HHhc
Q psy2407 127 FILS 130 (245)
Q Consensus 127 ~i~s 130 (245)
+-..
T Consensus 372 L~~~ 375 (399)
T PRK09052 372 LRRT 375 (399)
T ss_pred HHhc
Confidence 5443
No 158
>PRK06025 acetyl-CoA acetyltransferase; Provisional
Probab=89.47 E-value=1.1 Score=41.24 Aligned_cols=70 Identities=11% Similarity=0.020 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcc-------eeeecCcchhHHHHHHHHHHHH
Q psy2407 56 INAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCR-------LFELKQACYSCTAGLQMAINFI 128 (245)
Q Consensus 56 ~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~-------~~dv~~~C~~~~~aL~~A~~~i 128 (245)
..|++++|+++ |++++|||.+.+.-. +........+.||++.... ++....|++|....+.+..++.
T Consensus 318 ~~Ai~~aL~~A-Gl~~~DID~~ei~ea-----Fa~~~l~~~~~lg~~~~~vN~~GG~ia~GHp~GaTGa~~v~~ll~qL~ 391 (417)
T PRK06025 318 VPAAKKVLAKA-GLTKDDIDLWEINEA-----FAVVAEKFIRDLDLDRDKVNVNGGAIALGHPIGATGSILIGTVLDELE 391 (417)
T ss_pred HHHHHHHHHHc-CCCHHHCcEEEEchH-----HHHHHHHHHHHcCCChhhccccCCHHhcCCchhHHHHHHHHHHHHHHH
Confidence 57999999997 999999999875422 2233456677888743211 1111236667666777777776
Q ss_pred hcC
Q psy2407 129 LSK 131 (245)
Q Consensus 129 ~sg 131 (245)
+.|
T Consensus 392 ~~g 394 (417)
T PRK06025 392 RRG 394 (417)
T ss_pred HhC
Confidence 655
No 159
>PRK09051 beta-ketothiolase; Provisional
Probab=89.23 E-value=1.5 Score=40.08 Aligned_cols=42 Identities=12% Similarity=0.224 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
...|+++||+++ |++++|||++-+. ..+........+.||+.
T Consensus 294 ~~~a~~~al~~a-gi~~~did~~ei~-----d~f~~~~~~~~e~lg~~ 335 (394)
T PRK09051 294 PVPATQKALERA-GLTVADLDVIEAN-----EAFAAQACAVTRELGLD 335 (394)
T ss_pred HHHHHHHHHHHc-CCCHHHcCEEEec-----CccHHHHHHHHHHhCCC
Confidence 468999999997 9999999998652 22334455566889974
No 160
>PRK06205 acetyl-CoA acetyltransferase; Provisional
Probab=89.09 E-value=1.4 Score=40.38 Aligned_cols=42 Identities=12% Similarity=0.126 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
...|+++||+++ |++++|||.+-+.-. ++...-...+.||+.
T Consensus 300 ~~~a~~~al~~A-gl~~~Did~~ei~d~-----f~~~~l~~~e~lg~~ 341 (404)
T PRK06205 300 PVPATEKALARA-GLTLDDIDLIELNEA-----FAAQVLAVLKEWGFG 341 (404)
T ss_pred HHHHHHHHHHHc-CCCHHHCCEeeeccH-----HHHHHHHHHHHhCcC
Confidence 468999999997 999999998874322 223333445678864
No 161
>PF02803 Thiolase_C: Thiolase, C-terminal domain; InterPro: IPR020617 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 2WUA_B 4E1L_B 3SVK_A 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2IB8_B 2IBU_A 2IB9_C ....
Probab=88.80 E-value=1.9 Score=32.79 Aligned_cols=71 Identities=11% Similarity=0.093 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCC-------cceeeecCcchhHHHHHHHHHHH
Q psy2407 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRN-------CRLFELKQACYSCTAGLQMAINF 127 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~-------~~~~dv~~~C~~~~~aL~~A~~~ 127 (245)
...|++++|+++ |++++|||.+=+.-. +....-..++.||+.+. ..++-.-.||+|...-+++++++
T Consensus 24 p~~A~~~al~~a-g~~~~did~~Ei~Ea-----FA~~~l~~~~~lg~~~~~vN~~GG~la~GHP~gasG~r~~~~l~~~L 97 (123)
T PF02803_consen 24 PVPAARKALERA-GLTPDDIDVIEINEA-----FAAQVLAFLEALGLDPEKVNPNGGALALGHPLGASGARLVVELAHQL 97 (123)
T ss_dssp HHHHHHHHHHHH-T--GGGESEEEE--S-----BHHHHHHHHHHHTTGGGGBSTT--HHHH-BHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCccccchhhccch-----hhhHHHHhhccccccccccCcccccccccccccccccchhhhhHHHH
Confidence 457999999997 999999998865422 22444556777887421 11222224777777777777777
Q ss_pred HhcC
Q psy2407 128 ILSK 131 (245)
Q Consensus 128 i~sg 131 (245)
-..+
T Consensus 98 ~~~~ 101 (123)
T PF02803_consen 98 RRRG 101 (123)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 6543
No 162
>COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.77 E-value=0.84 Score=42.02 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEE-EEeccCCCCCCcHHHHHHHHcC
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELII-TCSESGIDFGKSMSTYIHHYLG 100 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li-~~t~~~~~~~p~~a~~l~~~LG 100 (245)
=+.+|.+.||+++ |++++|||.|- ++|.|+ ..-+.-...|.+.+|
T Consensus 277 Ga~~am~~AL~~A-gl~~~~idYinaHgTsT~-~nD~~E~~ai~~vfg 322 (412)
T COG0304 277 GAIRAMRAALADA-GLTPEDIDYINAHGTSTP-ANDKAESLAIKRVFG 322 (412)
T ss_pred hHHHHHHHHHHHc-CCCHhHCCEEeCCCccCC-CccHHHHHHHHHHhc
Confidence 4568999999997 99999999998 566665 344555666667777
No 163
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=88.70 E-value=0.37 Score=36.16 Aligned_cols=77 Identities=12% Similarity=0.016 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEEEE-eccCCCCCCcHHHHHHHHcCCCC---Ccceee----ec-CcchhHHHHHHH
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELIITC-SESGIDFGKSMSTYIHHYLGLNR---NCRLFE----LK-QACYSCTAGLQM 123 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li~~-t~~~~~~~p~~a~~l~~~LGl~~---~~~~~d----v~-~~C~~~~~aL~~ 123 (245)
+-..++.++||+++ |++++|||+|... +.++ ..-+.-...+.+.++-.. .++.-. ++ ...++++..|..
T Consensus 25 ~~~~~~i~~al~~a-gi~~~~I~~i~~hg~Gt~-~~D~~E~~ai~~~~~~~~~~~~~~v~s~K~~~Gh~~~asG~~~l~~ 102 (119)
T PF02801_consen 25 AALARAIRRALADA-GISPEDIDYIEAHGTGTP-LGDAAEAEAIARVFGDSARQQPVPVGSVKSNIGHTEAASGLLSLAK 102 (119)
T ss_dssp HHHHHHHHHHHHHH-TS-GGGEEEEE----SSH-HHHHHHHHHHHHHHGGGGGTSTSEEE-THHHH-B-GGGHHHHHHHH
T ss_pred HHHHHHHHHHHhhh-ccccccceeeeeeccccc-cchhhhhhhhhhhhcccccccccceeccccccccccccchHHHHHH
Confidence 34478899999997 9999999999854 3332 222344555566555421 133222 22 366778888888
Q ss_pred HHHHHhcC
Q psy2407 124 AINFILSK 131 (245)
Q Consensus 124 A~~~i~sg 131 (245)
+...++.+
T Consensus 103 ~~l~l~~~ 110 (119)
T PF02801_consen 103 ALLALEHG 110 (119)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhcC
Confidence 77777765
No 164
>PRK06366 acetyl-CoA acetyltransferase; Provisional
Probab=88.59 E-value=1.3 Score=40.40 Aligned_cols=78 Identities=10% Similarity=0.038 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCC-------cceeeecCcchhHHHHHHHHHHH
Q psy2407 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRN-------CRLFELKQACYSCTAGLQMAINF 127 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~-------~~~~dv~~~C~~~~~aL~~A~~~ 127 (245)
...|+++|++++ |++++|||++-+.=. +....-.-.+.||+..+ ..++..-.||+|....+.++.++
T Consensus 287 ~~~A~~~al~~A-gl~~~DiDv~Ei~da-----Fa~~~l~~le~lgl~g~~vN~~GG~la~GHP~GatG~~~~~~l~~qL 360 (388)
T PRK06366 287 PIPATRKLLEKQ-NKSIDYYDLVEHNEA-----FSIASIIVRDQLKIDNERFNVNGGAVAIGHPIGNSGSRIIVTLINAL 360 (388)
T ss_pred HHHHHHHHHHHc-CCCHHHcceeeccch-----hHHHHHHHHHHhCCCCCccCCCCchhhhCCCcCCCHHHHHHHHHHHH
Confidence 468999999997 999999998864322 22334455677887432 11222234777777777777777
Q ss_pred HhcCCCCCCeEEEE
Q psy2407 128 ILSKVSPGAKALVI 141 (245)
Q Consensus 128 i~sg~~~~~~aLVv 141 (245)
-..| .++.|+.
T Consensus 361 ~~~~---~~~g~~~ 371 (388)
T PRK06366 361 KTRH---MKTGLAT 371 (388)
T ss_pred HhcC---CCeEEEE
Confidence 6543 2555543
No 165
>PRK06064 acetyl-CoA acetyltransferase; Provisional
Probab=88.09 E-value=2.2 Score=38.77 Aligned_cols=42 Identities=17% Similarity=0.080 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCC
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL 101 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl 101 (245)
-...|+++|++++ |++++|||.+-..-++. .......+.||+
T Consensus 259 ~~~~a~~~al~~a-Gi~~~did~~e~~d~ft-----~~~~~~~e~lgl 300 (389)
T PRK06064 259 AAVVAAEKAYKMA-GIEPKDIDVAEVHDCFT-----IAEILAYEDLGF 300 (389)
T ss_pred HHHHHHHHHHHHc-CCCHHHCCEEEecCCCc-----HHHHHHHHHcCC
Confidence 4457999999997 99999999986543322 234445677776
No 166
>PRK07850 acetyl-CoA acetyltransferase; Provisional
Probab=87.62 E-value=2.8 Score=38.23 Aligned_cols=80 Identities=9% Similarity=0.014 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCC-------cceeeecCcchhHHHHHHHHH
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRN-------CRLFELKQACYSCTAGLQMAI 125 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~-------~~~~dv~~~C~~~~~aL~~A~ 125 (245)
.-...|+++|++++ |++++|||++-+.-. ++...-...+.||+... ..++..-.+++|...-++++.
T Consensus 285 ~~~~~a~~~al~~a-gl~~~did~~ei~d~-----F~~~~l~~~e~lg~~~~pvN~~GG~la~Ghp~gatG~~~v~e~~~ 358 (387)
T PRK07850 285 DGPVQATAKVLEKA-GMKIGDIDLVEINEA-----FASVVLSWAQVHEPDMDKVNVNGGAIALGHPVGSTGARLITTALH 358 (387)
T ss_pred chHHHHHHHHHHHc-CCCHHHcCeeeeccc-----chHHHHHHHHHcCCCCCCcCCCCchhhcCCCcchhHHHHHHHHHH
Confidence 44578999999997 999999999876333 22333344577886322 111222234444444555555
Q ss_pred HHHhcCCCCCCeEEEE
Q psy2407 126 NFILSKVSPGAKALVI 141 (245)
Q Consensus 126 ~~i~sg~~~~~~aLVv 141 (245)
++-+.+ +++.|+.
T Consensus 359 qL~~~~---~~~g~~~ 371 (387)
T PRK07850 359 ELERTD---KSTALIT 371 (387)
T ss_pred HHHhcC---CCeEEEE
Confidence 554432 2555543
No 167
>PRK07851 acetyl-CoA acetyltransferase; Provisional
Probab=86.83 E-value=1.1 Score=41.03 Aligned_cols=78 Identities=9% Similarity=0.055 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCC-------cceeeecCcchhHHHHHHHHHHH
Q psy2407 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRN-------CRLFELKQACYSCTAGLQMAINF 127 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~-------~~~~dv~~~C~~~~~aL~~A~~~ 127 (245)
...|+++|++++ |++++|||++-. . +.++...-...+.||+.+. ..++..-.|++|....+.+..++
T Consensus 305 ~~~a~~~al~~A-gi~~~did~~ei----~-d~f~~~~l~~le~lg~~~~pvN~~GG~l~~Ghp~gasg~~~~~~~~~qL 378 (406)
T PRK07851 305 PVEASKQALARA-GMSIDDIDLVEI----N-EAFAAQVLPSARELGIDEDKLNVSGGAIALGHPFGMTGARITTTLLNNL 378 (406)
T ss_pred HHHHHHHHHHHh-CCCHHHCCeehh----h-hHHHHHHHHHHHHhCCCccccCCCCChHhhcCcHHHHHHHHHHHHHHHH
Confidence 468999999997 999999998842 1 1122223333477887321 11222223555555555555555
Q ss_pred HhcCCCCCCeEEEE
Q psy2407 128 ILSKVSPGAKALVI 141 (245)
Q Consensus 128 i~sg~~~~~~aLVv 141 (245)
-+. ++++.|+.
T Consensus 379 ~~~---~~~~g~~~ 389 (406)
T PRK07851 379 QTH---DKTFGLET 389 (406)
T ss_pred Hhc---CCCeEEEE
Confidence 442 22555543
No 168
>PRK07516 acetyl-CoA acetyltransferase; Provisional
Probab=85.15 E-value=2.6 Score=38.31 Aligned_cols=44 Identities=9% Similarity=-0.003 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
.-...|+++|++++ |++++|||++-+.-.+ +...-...+.||+.
T Consensus 260 ~~~~~a~~~a~~~a-gl~~~did~~e~~d~f-----~~~~~~~~e~lg~~ 303 (389)
T PRK07516 260 EGPRRAWQRALAQA-GVTLDDLSFVETHDCF-----TIAELIEYEAMGLA 303 (389)
T ss_pred HHHHHHHHHHHHHc-CCCHHHCCEEEEecCC-----CHHHHHHHHHcCCC
Confidence 44557999999997 9999999998654332 23344556777764
No 169
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=84.64 E-value=3 Score=37.38 Aligned_cols=82 Identities=13% Similarity=0.071 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcC--CCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcc-----ee-eec-CcchhHHHHHHH
Q psy2407 53 SFAINAAAPLIDNLS--NIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCR-----LF-ELK-QACYSCTAGLQM 123 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~--g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~-----~~-dv~-~~C~~~~~aL~~ 123 (245)
+...++++++|++ . |++++|||.+++.... +.+-..+++.||+++... .+ +.+ .++++-..+|..
T Consensus 259 ~~~~~~i~~~L~~-~~~g~~~~did~~~~H~~~-----~~i~~~v~~~lgl~~~~~~~s~~~l~~~GN~~sasi~~~L~~ 332 (361)
T cd00831 259 KNLERVLRKLLAR-LGIGLFKLAFDHWCVHPGG-----RAVLDAVEKALGLSPEDLEASRMVLRRYGNMSSSSVLYVLAY 332 (361)
T ss_pred HHHHHHHHHHhcc-ccCCCccccceEEEECCCC-----hHHHHHHHHHcCCCHHHHHHHHHHHHHhCCchhccHHHHHHH
Confidence 3455677788888 7 8999999999865433 244557899999964422 12 233 366666666655
Q ss_pred HHHHHhcCCC-CCCeEEEEEe
Q psy2407 124 AINFILSKVS-PGAKALVIAT 143 (245)
Q Consensus 124 A~~~i~sg~~-~~~~aLVv~~ 143 (245)
+ ++.|.. +++++|+++.
T Consensus 333 ~---~~~g~~~~Gd~vll~~~ 350 (361)
T cd00831 333 M---EAKGRVKRGDRGLLIAF 350 (361)
T ss_pred H---HHhCCCCCCCEEEEEEE
Confidence 4 444422 4577777764
No 170
>PTZ00455 3-ketoacyl-CoA thiolase; Provisional
Probab=84.49 E-value=3.4 Score=38.39 Aligned_cols=46 Identities=9% Similarity=0.055 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCC
Q psy2407 52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNR 103 (245)
Q Consensus 52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~ 103 (245)
...+..|+++|++++ |++++|||++-+.-++ +...-...+.||+.+
T Consensus 308 ~~~~~~A~~~a~~~A-Gl~~~DiD~~Ei~daF-----a~~~l~~~e~lGl~~ 353 (438)
T PTZ00455 308 MFTSRAAAQKALSMA-GVKPSDLQVAEVHDCF-----TIAELLMYEALGIAE 353 (438)
T ss_pred chHHHHHHHHHHHHc-CCCHHHCcEeeecccC-----hHHHHHHHHHcCCCC
Confidence 344578999999997 9999999988654332 233445567788743
No 171
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=84.40 E-value=2.4 Score=38.08 Aligned_cols=72 Identities=17% Similarity=0.114 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcce-e--e-ec-CcchhHHHHHHHHHHH
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL-F--E-LK-QACYSCTAGLQMAINF 127 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~-~--d-v~-~~C~~~~~aL~~A~~~ 127 (245)
.....+++++|+++ |++++|||.+++.. ..+.+-..+.++||+++.... . + .+ .+.++...+|. ..
T Consensus 242 ~~~~~~i~~~L~~~-gl~~~did~~v~HQ-----~~~~i~~~i~~~Lgl~~ek~~~~~l~~~GNtssasip~~L~---~~ 312 (353)
T PRK12880 242 ECEPKSFKEILEFS-KVDEKDIAFHLFHQ-----SNAYLVDCIKEELKLNDDKVPNFIMEKYANLSACSLPALLC---EL 312 (353)
T ss_pred HHHHHHHHHHHHHc-CCCHHHCCEEEECC-----CCHHHHHHHHHHhCCCHHHhhhhhHHhhCCHHHHHHHHHHH---HH
Confidence 34456788999996 99999999998642 234556788999999754322 1 2 22 34445555554 34
Q ss_pred HhcCCC
Q psy2407 128 ILSKVS 133 (245)
Q Consensus 128 i~sg~~ 133 (245)
+..|..
T Consensus 313 ~~~~~~ 318 (353)
T PRK12880 313 DTPKEF 318 (353)
T ss_pred HHcCCc
Confidence 566643
No 172
>PRK05790 putative acyltransferase; Provisional
Probab=84.36 E-value=4 Score=37.15 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCC
Q psy2407 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL 101 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl 101 (245)
...|+++|++++ |++++|||.+-+.- .+....-...+.||+
T Consensus 293 ~~~a~~~a~~~A-gi~~~did~~e~~d-----~f~~~~l~~~e~lg~ 333 (393)
T PRK05790 293 PVPAIRKALEKA-GWSLADLDLIEINE-----AFAAQALAVEKELGL 333 (393)
T ss_pred HHHHHHHHHHHc-CCCHHHCCEEEeCc-----HHHHHHHHHHHHhCC
Confidence 457999999997 99999999986421 222334445677886
No 173
>PRK06158 thiolase; Provisional
Probab=84.25 E-value=4.6 Score=36.72 Aligned_cols=43 Identities=9% Similarity=0.075 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
-...|+++|++++ |++++|||.+-+.-++ +...-...+.||+.
T Consensus 255 ~~~~aa~~A~~~A-Gi~p~DId~~ElyD~F-----s~~~l~~~E~lG~~ 297 (384)
T PRK06158 255 AAAESGPRAFAMA-GLTPADIDVVELYDAF-----TINTILFLEDLGFC 297 (384)
T ss_pred HHHHHHHHHHHHc-CCCHHHCcEEEecCCc-----hHHHHHHHHHcCCC
Confidence 3567999999997 9999999998765443 23334445777763
No 174
>PRK06690 acetyl-CoA acetyltransferase; Provisional
Probab=84.00 E-value=4.2 Score=36.76 Aligned_cols=73 Identities=10% Similarity=-0.054 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCccee-------eecCcchhHHHHHHHHH
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF-------ELKQACYSCTAGLQMAI 125 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~-------dv~~~C~~~~~aL~~A~ 125 (245)
.-...|++++|+++ |++++|||++...- ..........+.||+.+..... -...|++|......+..
T Consensus 258 ~~~~~a~~~al~~A-gl~~~Did~~ei~e-----afa~~~~~~~e~lgl~~~~vn~~GG~la~Ghp~GatG~~~~~~~~~ 331 (361)
T PRK06690 258 TGPIFAVNKLLNEM-NMKVEDIDYFEINE-----AFASKVVACAKELQIPYEKLNVNGGAIALGHPYGASGAMLVTRLFY 331 (361)
T ss_pred hHHHHHHHHHHHHc-CCCHHHcCEeeecc-----hhHHHHHHHHHhcCCCchhcccCCcHHhccCchhhhHHHHHHHHHH
Confidence 34577999999997 99999999986532 2334445567789984321111 12346776666666666
Q ss_pred HHHhcC
Q psy2407 126 NFILSK 131 (245)
Q Consensus 126 ~~i~sg 131 (245)
++-+.|
T Consensus 332 ql~~~~ 337 (361)
T PRK06690 332 QAKRED 337 (361)
T ss_pred HHHHhC
Confidence 665543
No 175
>PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional
Probab=83.87 E-value=3.2 Score=37.23 Aligned_cols=48 Identities=13% Similarity=0.039 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCcCEEEE-EeccCCCCCCcHHHHHHHHcCC
Q psy2407 52 VSFAINAAAPLIDNLSNIDKNSIELIIT-CSESGIDFGKSMSTYIHHYLGL 101 (245)
Q Consensus 52 ~~la~~Aa~~aL~~a~g~~~~dId~li~-~t~~~~~~~p~~a~~l~~~LGl 101 (245)
..-..+|+++||+++ |++++|||.|-. +|.|+ ..-+.-...|.+.+|-
T Consensus 205 ~~~~~~ai~~AL~~A-gl~p~dIdyIeaHgtgT~-~~D~~E~~Ai~~~fg~ 253 (342)
T PRK14691 205 GDGAYRAMKIALRQA-GITPEQVQHLNAHATSTP-VGDLGEINAIKHLFGE 253 (342)
T ss_pred HHHHHHHHHHHHHHc-CCCHHHCCEEEecCCCCc-CCCHHHHHHHHHHhCC
Confidence 456778999999997 999999999874 44444 3345556677777774
No 176
>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.
Probab=83.75 E-value=5.6 Score=35.73 Aligned_cols=45 Identities=16% Similarity=0.008 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCC
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNR 103 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~ 103 (245)
.-...|+++||+++ |++++|||++-+..++ +...-...+.||+.+
T Consensus 251 ~~~~~a~~~al~~A-gl~~~did~~ei~d~F-----~~~~l~~~e~lGl~~ 295 (375)
T cd00829 251 DAARLAARRAYKMA-GITPDDIDVAELYDCF-----TIAELLALEDLGFCE 295 (375)
T ss_pred HHHHHHHHHHHHHc-CCCHHHCCEEEecCcC-----hHHHHHHHHHcCCCC
Confidence 44568999999997 9999999998765443 234455567788743
No 177
>PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=83.35 E-value=4.5 Score=37.05 Aligned_cols=77 Identities=8% Similarity=-0.118 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEE-EEeccCCCCCCcHHHHHHHHcCCCCCcceeeec-CcchhHHHHHHHHHHHHhc
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELII-TCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK-QACYSCTAGLQMAINFILS 130 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li-~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~-~~C~~~~~aL~~A~~~i~s 130 (245)
.-..++.++||+++ |+ ++|||+|. ++|.|+ ..-..-...|.+.++.+-...---++ .-.++++..+..+...|+.
T Consensus 280 ~~~~~am~~AL~~A-gl-~~~IdyI~ahgtgT~-~~D~~E~~Ai~~~f~~pvsS~Ks~~GH~l~AAGa~e~i~~~lal~~ 356 (398)
T PRK06519 280 GDLEASLERLLKPA-GG-LAAPTAVISGATGAH-PATAEEKAALEAALAGPVRGIGTLFGHTMEAQFPLGLALAALSVSK 356 (398)
T ss_pred HHHHHHHHHHHHHC-CC-cccCCEEEeCCCCCC-CccHHHHHHHHHHcCCCccccchhhccchHHHHHHHHHHHHHHHhc
Confidence 34578999999997 99 89999987 445554 23334456667777753111111122 2344555555555566666
Q ss_pred CC
Q psy2407 131 KV 132 (245)
Q Consensus 131 g~ 132 (245)
|.
T Consensus 357 g~ 358 (398)
T PRK06519 357 GA 358 (398)
T ss_pred Cc
Confidence 63
No 178
>COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]
Probab=83.29 E-value=6.7 Score=35.58 Aligned_cols=83 Identities=14% Similarity=0.185 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC-----CCccee-eec-CcchhHHHHHH
Q psy2407 50 DPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN-----RNCRLF-ELK-QACYSCTAGLQ 122 (245)
Q Consensus 50 ~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~-----~~~~~~-dv~-~~C~~~~~aL~ 122 (245)
.-......|++..+++. |+.++|.|.+++.+-. |.....++..||.+ +..... .|+ ..|++...+|.
T Consensus 206 ~Y~~~~~~a~~~~~~k~-gls~~dfdy~vfH~P~-----~k~~~ka~k~l~~~~e~v~~~l~~~~~vGN~YtgS~~L~La 279 (377)
T COG3425 206 AYFKHVENAAKGYMEKT-GLSPDDFDYIVFHQPN-----GKFPKKAAKSLGFKEEQVKPGLVYPQRIGNTYTGSLLLGLA 279 (377)
T ss_pred HHHHHHHHHHHHHHHHh-CCChhhhCeEEecCCC-----CchHHHHHHHhCccHhhcCccchhhhhcCcccchhHHHHHH
Confidence 34567788999999996 9999999999986443 45567777888865 333333 464 48888887775
Q ss_pred HHHHHHhcCCCCCCeEEEE
Q psy2407 123 MAINFILSKVSPGAKALVI 141 (245)
Q Consensus 123 ~A~~~i~sg~~~~~~aLVv 141 (245)
....... . +++++|++
T Consensus 280 s~L~~a~--~-~G~rIl~~ 295 (377)
T COG3425 280 SLLDNAK--L-PGDRILLF 295 (377)
T ss_pred HHHhhcC--C-CCCEEEEE
Confidence 4433333 2 45777776
No 179
>PRK09050 beta-ketoadipyl CoA thiolase; Validated
Probab=82.95 E-value=4.7 Score=36.99 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
...|+++||+++ |++++|||++-+. +.++...-...+.||+.
T Consensus 299 ~~~a~~~al~~A-gl~~~DId~~ei~-----D~f~~~~l~~~e~lg~~ 340 (401)
T PRK09050 299 PAPATRKLLARL-GLTIDQFDVIELN-----EAFAAQGLAVLRQLGLA 340 (401)
T ss_pred HHHHHHHHHHHc-CCCHHHCCccccC-----cHhHHHHHHHHHHcCCC
Confidence 468999999997 9999999988632 12233344556788973
No 180
>TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II. FabB sequences should fall well below the noise cutoff of this model.
Probab=82.92 E-value=2.5 Score=38.42 Aligned_cols=77 Identities=12% Similarity=0.040 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEE-EeccCCCCCCcHHHHHHHHcCCCC-Ccceee----ecC-cchhHHHHHHHHHH
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIIT-CSESGIDFGKSMSTYIHHYLGLNR-NCRLFE----LKQ-ACYSCTAGLQMAIN 126 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~-~t~~~~~~~p~~a~~l~~~LGl~~-~~~~~d----v~~-~C~~~~~aL~~A~~ 126 (245)
-..+++++||+++ |++++|||++.. +|.++ ..-+.-...+.+.+|-.. .++.-. +++ ..++++..+..+..
T Consensus 276 ~~~~ai~~Al~~A-gi~~~dId~ve~h~tgt~-~~D~~E~~a~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~~~~~~~ 353 (407)
T TIGR03150 276 GAARAMRAALKDA-GINPEDVDYINAHGTSTP-LGDKAETKAIKRVFGDHAYKLAVSSTKSMTGHLLGAAGAIEAIFTVL 353 (407)
T ss_pred HHHHHHHHHHHHc-CCCHhHCCEEeCcCCCCC-CCCHHHHHHHHHHhccCCCCCceeCCcchhchhHHHHHHHHHHHHHH
Confidence 3568999999997 999999999874 44443 233444556666676421 222211 222 34445555555555
Q ss_pred HHhcCC
Q psy2407 127 FILSKV 132 (245)
Q Consensus 127 ~i~sg~ 132 (245)
.++.+.
T Consensus 354 ~l~~~~ 359 (407)
T TIGR03150 354 AIRDGV 359 (407)
T ss_pred HHhcCC
Confidence 666553
No 181
>PRK13359 beta-ketoadipyl CoA thiolase; Provisional
Probab=82.17 E-value=4.9 Score=36.86 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCC
Q psy2407 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL 101 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl 101 (245)
...|+++||+++ |++++|||++-+. +.+....-...+.||+
T Consensus 298 ~~~A~~~al~~A-Gl~~~DID~iei~-----dafa~~~l~~~e~lg~ 338 (400)
T PRK13359 298 PAPATQKLLARL-GMTLDQFDVIELN-----EAFASQGLAVLRELGL 338 (400)
T ss_pred HHHHHHHHHHHh-CCCHHHcCcCccC-----cHhHHHHHHHHHHcCC
Confidence 468999999997 9999999988632 1222334455677887
No 182
>PRK07661 acetyl-CoA acetyltransferase; Provisional
Probab=82.03 E-value=3.7 Score=37.53 Aligned_cols=72 Identities=15% Similarity=0.112 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCC---cc----eeeecCcchhHHHHHHHHHH
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRN---CR----LFELKQACYSCTAGLQMAIN 126 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~---~~----~~dv~~~C~~~~~aL~~A~~ 126 (245)
-...|+++||+++ |++++|||++-+.- .++...-...+.||+.+. .. ++..-.|++|....++++.+
T Consensus 290 ~~~~a~~~al~~a-gl~~~did~~ei~d-----~f~~~~l~~~e~lg~~~~~vN~~GG~~a~Ghp~gasG~~~~~el~~q 363 (391)
T PRK07661 290 GPIAAIPKALKLA-GLELSDIGLFELNE-----AFASQSIQVIRELGLDEEKVNVNGGAIALGHPLGCTGAKLTLSLIHE 363 (391)
T ss_pred HHHHHHHHHHHHc-CCCHHHCCEEEeCC-----HHHHHHHHHHHHcCCCCCCCCCCCChHHhCCcHHHHHHHHHHHHHHH
Confidence 4468999999997 99999999987322 222323333467887321 11 12222356666666666666
Q ss_pred HHhcC
Q psy2407 127 FILSK 131 (245)
Q Consensus 127 ~i~sg 131 (245)
+-+.|
T Consensus 364 L~~~~ 368 (391)
T PRK07661 364 MKRRN 368 (391)
T ss_pred HHhcC
Confidence 65543
No 183
>PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed
Probab=81.78 E-value=7 Score=35.64 Aligned_cols=41 Identities=15% Similarity=0.120 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCC
Q psy2407 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL 101 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl 101 (245)
...|+++|++++ |++++|||++-+.-. +....-...+.||+
T Consensus 284 ~~~a~~~al~~A-gl~~~DId~~El~d~-----F~~~~l~~~e~lg~ 324 (387)
T PRK08947 284 PVPATQKALKRA-GLSISDIDVFELNEA-----FAAQSLPCLKDLGL 324 (387)
T ss_pred HHHHHHHHHHHc-CCCHHHCCEEEeccc-----chHHHHHHHHHcCC
Confidence 467899999997 999999998865332 23334455677887
No 184
>cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.
Probab=81.64 E-value=4.1 Score=36.87 Aligned_cols=80 Identities=10% Similarity=-0.004 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCcCEEEEE-eccCCCCCCcHHHHHHHHcCCC-CCccee----eec-CcchhHHHHHHHH
Q psy2407 52 VSFAINAAAPLIDNLSNIDKNSIELIITC-SESGIDFGKSMSTYIHHYLGLN-RNCRLF----ELK-QACYSCTAGLQMA 124 (245)
Q Consensus 52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~-t~~~~~~~p~~a~~l~~~LGl~-~~~~~~----dv~-~~C~~~~~aL~~A 124 (245)
..-..++++++|+++ |++++|||.+... +.++ ..-+.-...+.+.++-. ..++.. .++ ..+++++..|..+
T Consensus 274 ~~~~~~~i~~al~~a-gi~~~dId~v~~h~tgt~-~~d~~E~~al~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~ 351 (406)
T cd00834 274 GEGAARAMRAALADA-GLSPEDIDYINAHGTSTP-LNDAAESKAIKRVFGEHAKKVPVSSTKSMTGHLLGAAGAVEAIAT 351 (406)
T ss_pred cHHHHHHHHHHHHHc-CCCHHHCCEEecccccCc-cccHHHHHHHHHHhcccCCCCceeCcchhhccchhhhhHHHHHHH
Confidence 345567899999997 9999999998854 4333 33334455555656541 122221 123 3677888888888
Q ss_pred HHHHhcCCC
Q psy2407 125 INFILSKVS 133 (245)
Q Consensus 125 ~~~i~sg~~ 133 (245)
...++.|..
T Consensus 352 ~~~l~~~~i 360 (406)
T cd00834 352 LLALRDGVL 360 (406)
T ss_pred HHHHhcCCc
Confidence 888887754
No 185
>PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=81.59 E-value=3.2 Score=37.87 Aligned_cols=77 Identities=13% Similarity=0.083 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCCCCcCCcCEEE-EEeccCCCCCCcHHHHHHHHcCCC-CCcceee----ecC-cchhHHHHHHHHHHH
Q psy2407 55 AINAAAPLIDNLSNIDKNSIELII-TCSESGIDFGKSMSTYIHHYLGLN-RNCRLFE----LKQ-ACYSCTAGLQMAINF 127 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~~dId~li-~~t~~~~~~~p~~a~~l~~~LGl~-~~~~~~d----v~~-~C~~~~~aL~~A~~~ 127 (245)
...|+++||+++ |++++|||++. ++|.|+ ...+.-...+.+.+|.. .+++... +++ .+++++..+..+...
T Consensus 278 ~~~a~~~Al~~a-gi~~~dId~v~~hgtgt~-~~d~~E~~al~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~~i~~~l~ 355 (411)
T PRK07314 278 AARAMKLALKDA-GINPEDIDYINAHGTSTP-AGDKAETQAIKRVFGEHAYKVAVSSTKSMTGHLLGAAGAVEAIFSVLA 355 (411)
T ss_pred HHHHHHHHHHHc-CCCHHHCCEEEccccCCc-cccHHHHHHHHHHhcccCCCCeeECccchhchhHHHHHHHHHHHHHHH
Confidence 467899999997 99999999987 444443 23334445566666632 1222211 233 455666666666667
Q ss_pred HhcCCC
Q psy2407 128 ILSKVS 133 (245)
Q Consensus 128 i~sg~~ 133 (245)
++.|..
T Consensus 356 l~~~~i 361 (411)
T PRK07314 356 IRDQVI 361 (411)
T ss_pred HhCCCc
Confidence 776644
No 186
>PRK06504 acetyl-CoA acetyltransferase; Provisional
Probab=81.34 E-value=3.4 Score=37.73 Aligned_cols=47 Identities=11% Similarity=0.060 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCC
Q psy2407 51 PVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNR 103 (245)
Q Consensus 51 ~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~ 103 (245)
.......|+++|++++ |++++|||++-+.-. +....-...+.||+.+
T Consensus 286 ~~~~~~~a~~~a~~~a-gl~~~Did~~Ei~d~-----Fa~~~l~~~e~lG~~~ 332 (390)
T PRK06504 286 MLEAPLPATERALKKA-GMKIDDIDLYEVNEA-----FASVPLAWLKATGADP 332 (390)
T ss_pred hhccHHHHHHHHHHHc-CCCHHHCCEEEeccc-----chHHHHHHHHHhCCCC
Confidence 3345567999999997 999999998865433 2233445578899853
No 187
>TIGR02430 pcaF beta-ketoadipyl CoA thiolase. Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid.
Probab=80.34 E-value=5.8 Score=36.38 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
...|+++||+++ |++++|||++-+. +.++.......+.||+.
T Consensus 298 ~~~a~~~al~~A-gl~~~DID~~ei~-----D~f~~~~l~~~e~lG~~ 339 (400)
T TIGR02430 298 PVPATQKLLARA-GLSIDQFDVIELN-----EAFAAQALAVLRELGLA 339 (400)
T ss_pred HHHHHHHHHHHh-CCCHHHCCCcccC-----cHHHHHHHHHHHHcCCC
Confidence 468999999997 9999999988632 22333444556788973
No 188
>PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II
Probab=80.24 E-value=4.7 Score=38.51 Aligned_cols=77 Identities=9% Similarity=0.034 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCCCCcCCcCEEE-EEeccCCCCCCcHHHHHHHHcCCCCCcceee----ec-CcchhHHHHHHHHHHHH
Q psy2407 55 AINAAAPLIDNLSNIDKNSIELII-TCSESGIDFGKSMSTYIHHYLGLNRNCRLFE----LK-QACYSCTAGLQMAINFI 128 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~~dId~li-~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~d----v~-~~C~~~~~aL~~A~~~i 128 (245)
..++.++||+++ |++++|||+|- ++|.|+. .-+.-...|.+.+|-.+..+... ++ .-+++++..+..+...|
T Consensus 407 ~~~am~~AL~~A-Gl~p~dIdyInaHGTGT~~-gD~~E~~Ai~~~Fg~~~~~pV~S~Ks~iGH~~gAAGa~eli~~~lal 484 (540)
T PLN02787 407 VILCIEKALAQS-GVSKEDVNYINAHATSTKA-GDLKEYQALMRCFGQNPELRVNSTKSMIGHLLGAAGAVEAIATVQAI 484 (540)
T ss_pred HHHHHHHHHHHc-CCCHHHCcEEEccCccCCC-CCHHHHHHHHHHhCCCCCceeeCCCCCcCCCcccchHHHHHHHHHHH
Confidence 468899999997 99999999986 5555552 23344556667777422233221 22 24445555555555666
Q ss_pred hcCCC
Q psy2407 129 LSKVS 133 (245)
Q Consensus 129 ~sg~~ 133 (245)
+.|..
T Consensus 485 ~~g~i 489 (540)
T PLN02787 485 RTGWV 489 (540)
T ss_pred hcCCc
Confidence 66643
No 189
>PRK06289 acetyl-CoA acetyltransferase; Provisional
Probab=80.14 E-value=4.2 Score=37.20 Aligned_cols=43 Identities=7% Similarity=-0.021 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
....|+++|++++ |++++|||.+-+.-. +....-...+.||+.
T Consensus 277 ~~~~aa~~a~~~A-gi~~~Didv~el~D~-----fa~~~l~~le~lGl~ 319 (403)
T PRK06289 277 HVRQAVLDAYRRA-GVGLDDLDGFEVHDC-----FTPSEYLAIDHIGLT 319 (403)
T ss_pred HHHHHHHHHHHHc-CCCHHHCeEEeeecc-----chHHHHHHHHHcCCC
Confidence 3568999999997 999999999875433 234445556788874
No 190
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria. CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.
Probab=80.00 E-value=6.1 Score=36.10 Aligned_cols=79 Identities=5% Similarity=0.052 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCcCEEEE-EeccCCCCCCcHHHHHHHHcCCCCCcceee----ec-CcchhHHHHHHHHH
Q psy2407 52 VSFAINAAAPLIDNLSNIDKNSIELIIT-CSESGIDFGKSMSTYIHHYLGLNRNCRLFE----LK-QACYSCTAGLQMAI 125 (245)
Q Consensus 52 ~~la~~Aa~~aL~~a~g~~~~dId~li~-~t~~~~~~~p~~a~~l~~~LGl~~~~~~~d----v~-~~C~~~~~aL~~A~ 125 (245)
..-..+|.++||+++ |+++++||.|.. +|.|+ ..-+.-...|.+.+|-. ..+... ++ ..+++++..+..+.
T Consensus 269 ~~~~~~a~~~al~~a-g~~~~~i~~v~~hgtgt~-~~D~~E~~al~~~fg~~-~~pv~s~K~~~Gh~~~aaG~~~l~~~~ 345 (399)
T cd00832 269 PPGLARAIRLALADA-GLTPEDVDVVFADAAGVP-ELDRAEAAALAAVFGPR-GVPVTAPKTMTGRLYAGGAPLDVATAL 345 (399)
T ss_pred HHHHHHHHHHHHHHc-CCCHHHccEEEeccCcCC-CCCHHHHHHHHHHhCCC-CCceeCCCchhcchHHHHHHHHHHHHH
Confidence 445678899999997 999999999874 44444 33445556677777742 233222 22 24556666666666
Q ss_pred HHHhcCCC
Q psy2407 126 NFILSKVS 133 (245)
Q Consensus 126 ~~i~sg~~ 133 (245)
..++.+..
T Consensus 346 l~l~~~~i 353 (399)
T cd00832 346 LALRDGVI 353 (399)
T ss_pred HHHhCCCc
Confidence 66776643
No 191
>PRK06066 acetyl-CoA acetyltransferase; Provisional
Probab=79.83 E-value=5 Score=36.65 Aligned_cols=41 Identities=12% Similarity=-0.051 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCCC--cCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 56 INAAAPLIDNLSNID--KNSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 56 ~~Aa~~aL~~a~g~~--~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
..|+++|++++ |++ ++|||.+-+.-. +....-...+.||+.
T Consensus 259 ~~Aa~~a~~~A-Gi~~p~~DiD~~ei~D~-----Ft~~~l~~~e~lG~~ 301 (385)
T PRK06066 259 RIAADMAYKMA-GIESPRKEVDAAEVDDR-----YSYKELQHIEALRLS 301 (385)
T ss_pred HHHHHHHHHHc-CCCCCHHHCcEEEEecC-----ChHHHHHHHHHcCCC
Confidence 47999999997 997 799998875422 223344556677764
No 192
>PRK12578 acetyl-CoA acetyltransferase; Provisional
Probab=79.80 E-value=4.7 Score=36.57 Aligned_cols=43 Identities=16% Similarity=0.059 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
-...|+++|++++ |++++|||.+-+.-++ +...-...+.||+.
T Consensus 258 ~~~~a~~~al~~A-gi~~~DiD~~ei~d~f-----t~~~l~~le~lGl~ 300 (385)
T PRK12578 258 ATQLAARQAYNMA-KVTPNDIEVATVHDAF-----TIAEIMGYEDLGFT 300 (385)
T ss_pred HHHHHHHHHHHHc-CCCHHHCCEEEecCcC-----hHHHHHHHHHcCCC
Confidence 3567999999997 9999999997654332 23344556778874
No 193
>PRK07855 lipid-transfer protein; Provisional
Probab=79.65 E-value=2.4 Score=38.65 Aligned_cols=43 Identities=14% Similarity=0.020 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
....|+++|++++ |++++|||++-+.-++ +...-...+.||+.
T Consensus 267 ~~~~aa~~a~~~A-Gi~~~DiDv~El~D~F-----t~~~l~~~E~lG~~ 309 (386)
T PRK07855 267 EMGLVARQLWAQS-GLGPADIDTAILYDHF-----TPFVLMQLEELGFC 309 (386)
T ss_pred hHHHHHHHHHHHc-CCCHHHCcEEEeccCC-----cHHHHHHHHHcCCC
Confidence 3457999999997 9999999998654332 23333445666653
No 194
>PRK08242 acetyl-CoA acetyltransferase; Validated
Probab=79.54 E-value=6.5 Score=36.08 Aligned_cols=77 Identities=9% Similarity=0.007 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCC-------cceeeecCcchhHHHHHHHHHHHH
Q psy2407 56 INAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRN-------CRLFELKQACYSCTAGLQMAINFI 128 (245)
Q Consensus 56 ~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~-------~~~~dv~~~C~~~~~aL~~A~~~i 128 (245)
..|+++||+++ |++++|||++-+. ..+....-...+.||+.+. ..++..-.|++|....+.++..+-
T Consensus 303 ~~a~~~al~~A-Gl~~~DID~~ei~-----daFa~~~l~~~e~lG~~~~~vN~~GG~la~GHP~GAsG~~~~~~l~~~L~ 376 (402)
T PRK08242 303 VPATRKALAKA-GLTVDDIDLFELN-----EAFASVVLRFMQALDIPHDKVNVNGGAIAMGHPLGATGAMILGTVLDELE 376 (402)
T ss_pred HHHHHHHHHHc-CCCHHHCCEEEec-----chhhHHHHHHHHHhCCCCcCCCcCCCHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 56999999997 9999999988742 2233334455788887422 111222235555555666666654
Q ss_pred hcCCCCCCeEEEE
Q psy2407 129 LSKVSPGAKALVI 141 (245)
Q Consensus 129 ~sg~~~~~~aLVv 141 (245)
+.| .++.|+.
T Consensus 377 ~~~---~~~g~~~ 386 (402)
T PRK08242 377 RRG---KRTALIT 386 (402)
T ss_pred hcC---CCeEEEE
Confidence 433 2455443
No 195
>PRK06445 acetyl-CoA acetyltransferase; Provisional
Probab=79.17 E-value=9.6 Score=34.78 Aligned_cols=78 Identities=10% Similarity=0.072 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCC-------cceeeecCcchhHHHHHHHHHHH
Q psy2407 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRN-------CRLFELKQACYSCTAGLQMAINF 127 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~-------~~~~dv~~~C~~~~~aL~~A~~~ 127 (245)
...|+++||+++ |++++|||.+-+.-. +....-...+.||+.+. ..++..-.||+|...-++++.++
T Consensus 294 ~~~a~~~al~~A-gl~~~dId~~e~~d~-----f~~~~l~~~e~lg~~~~~vN~~GG~la~Ghp~gatG~~~v~e~~~qL 367 (394)
T PRK06445 294 PVPASKKALEKA-GLSVKDIDLWEINEA-----FAVVVLYAIKELGLDPETVNIKGGAIAIGHPLGATGARIVGTLARQL 367 (394)
T ss_pred HHHHHHHHHHHc-CCCHHHcCEEEeccc-----chHHHHHHHHHhCCCccccCCCCCHHHcCCCccchHHHHHHHHHHHH
Confidence 467999999997 999999998865432 23444555678887422 11222234666666666666666
Q ss_pred HhcCCCCCCeEEEE
Q psy2407 128 ILSKVSPGAKALVI 141 (245)
Q Consensus 128 i~sg~~~~~~aLVv 141 (245)
-..+ .++.|+.
T Consensus 368 ~~~~---~~~gl~~ 378 (394)
T PRK06445 368 QIKG---KDYGVAT 378 (394)
T ss_pred HhcC---CCEEEEE
Confidence 4332 1455543
No 196
>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=79.12 E-value=5.5 Score=36.26 Aligned_cols=75 Identities=9% Similarity=-0.048 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCCCCcCCcCEEEE-EeccCCCCCCcHHHHHHHHcCCCCCcceee----ec-CcchhHHHHHHHHHHHH
Q psy2407 55 AINAAAPLIDNLSNIDKNSIELIIT-CSESGIDFGKSMSTYIHHYLGLNRNCRLFE----LK-QACYSCTAGLQMAINFI 128 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~~dId~li~-~t~~~~~~~p~~a~~l~~~LGl~~~~~~~d----v~-~~C~~~~~aL~~A~~~i 128 (245)
..+++++||+++ |++++|||.+.. +|.|+ ..-+.-...|.+.+|- +.+.-. ++ ..+++++..+..+...+
T Consensus 262 ~~~a~~~Al~~A-gl~~~dId~v~~hgtgt~-~~D~~E~~al~~~f~~--~~pv~s~K~~~Gh~~~AaG~~~l~~~~~~l 337 (392)
T PRK09185 262 AILAMQQALADA-GLAPADIGYINLHGTATP-LNDAMESRAVAAVFGD--GVPCSSTKGLTGHTLGAAGAVEAAICWLAL 337 (392)
T ss_pred HHHHHHHHHHHc-CCCHHHccEEEeCCCCCc-CCCHHHHHHHHHHhCC--CCceeCCCcccccChhhcchHHHHHHHHHH
Confidence 458999999997 999999999874 44444 2234445566666663 222211 22 35566666666666666
Q ss_pred hcCCC
Q psy2407 129 LSKVS 133 (245)
Q Consensus 129 ~sg~~ 133 (245)
+.|..
T Consensus 338 ~~~~i 342 (392)
T PRK09185 338 RHGLP 342 (392)
T ss_pred hcCCC
Confidence 76644
No 197
>PRK08142 acetyl-CoA acetyltransferase; Provisional
Probab=79.06 E-value=2.4 Score=38.71 Aligned_cols=43 Identities=12% Similarity=-0.003 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCC
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL 101 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl 101 (245)
.....|+++|++++ |++++|||.+-+..+++ .......+.||+
T Consensus 255 ~~~~~aa~~a~~~A-Gi~~~did~~elyD~Fs-----~~~~~~~E~lGl 297 (388)
T PRK08142 255 SGAAWSGPAAFAEA-GVTPADIKYASIYDSFT-----ITVLMQLEDLGF 297 (388)
T ss_pred HHHHHHHHHHHHHc-CCCHHHCCEEEEeccch-----HHHHHHHHHcCC
Confidence 44568999999997 99999999886654432 333344566776
No 198
>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=78.87 E-value=5.8 Score=36.21 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
-...|+++|++++ |++++|||++-+.-. ++...-...+.||+.
T Consensus 270 ~~~~A~~~al~~A-gi~~~DID~~Ei~d~-----Fa~~~l~~~e~lgl~ 312 (393)
T cd00826 270 GPIEAARKALEKA-GLGIGDLDLIEAHDA-----FAANACATNEALGLC 312 (393)
T ss_pred eHHHHHHHHHHHc-CCCHHHcCeeehhhh-----hHHHHHHHHHHhCCC
Confidence 3578999999997 999999998865332 223344556777764
No 199
>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.
Probab=78.81 E-value=4.6 Score=36.69 Aligned_cols=79 Identities=9% Similarity=-0.015 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCcCEEEE-EeccCCCCCCcHHHHHHHHcCCC-CCcceee----ec-CcchhHHHHHHHH
Q psy2407 52 VSFAINAAAPLIDNLSNIDKNSIELIIT-CSESGIDFGKSMSTYIHHYLGLN-RNCRLFE----LK-QACYSCTAGLQMA 124 (245)
Q Consensus 52 ~~la~~Aa~~aL~~a~g~~~~dId~li~-~t~~~~~~~p~~a~~l~~~LGl~-~~~~~~d----v~-~~C~~~~~aL~~A 124 (245)
..-..++.++||+++ |++++|||+|.. +|.++ ..-+.....+.+.+|-. ...+... ++ ...++++..+..+
T Consensus 273 ~~~~~~a~~~Al~~A-gi~~~dId~i~~hgtgt~-~~D~~E~~ai~~~~~~~~~~~~v~s~K~~~Gh~~~Asg~~~l~~~ 350 (407)
T cd00828 273 GKGIARAIRTALAKA-GLSLDDLDVISAHGTSTP-ANDVAESRAIAEVAGALGAPLPVTAQKALFGHSKGAAGALQLIGA 350 (407)
T ss_pred hHHHHHHHHHHHHHc-CCCHHHcCEEecccccCc-cccHHHHHHHHHHHhccCCCceeecccchhccchhhhhHHHHHHH
Confidence 356678999999997 999999999874 44443 23344455555555531 1223222 22 3455555566666
Q ss_pred HHHHhcCC
Q psy2407 125 INFILSKV 132 (245)
Q Consensus 125 ~~~i~sg~ 132 (245)
...++.+.
T Consensus 351 ~~~l~~~~ 358 (407)
T cd00828 351 LQSLEHGL 358 (407)
T ss_pred HHHHhcCc
Confidence 66666653
No 200
>PRK08313 acetyl-CoA acetyltransferase; Provisional
Probab=78.30 E-value=3.6 Score=37.45 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhcCCCC--cCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 52 VSFAINAAAPLIDNLSNID--KNSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 52 ~~la~~Aa~~aL~~a~g~~--~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
......|+++|++++ |++ ++|||++-+..++ +...-...+.|||.
T Consensus 254 ~~~~~~a~~~a~~~A-gi~~p~~Did~~el~d~F-----~~~~~~~~e~lGl~ 300 (386)
T PRK08313 254 PQAGRDAAAALWKAA-GITDPRDEIDVAEIYVPF-----SWFEPMWLENLGFA 300 (386)
T ss_pred cHHHHHHHHHHHHHc-CCCCChhhCCEEEeccCC-----hHHHHHHHHHcCCC
Confidence 345668999999997 997 6999988654443 23344455777764
No 201
>PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=77.82 E-value=5 Score=36.51 Aligned_cols=78 Identities=10% Similarity=0.032 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCcCEEE-EEeccCCCCCCcHHHHHHHHcCCCCCcceee----ec-CcchhHHHHHHHHH
Q psy2407 52 VSFAINAAAPLIDNLSNIDKNSIELII-TCSESGIDFGKSMSTYIHHYLGLNRNCRLFE----LK-QACYSCTAGLQMAI 125 (245)
Q Consensus 52 ~~la~~Aa~~aL~~a~g~~~~dId~li-~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~d----v~-~~C~~~~~aL~~A~ 125 (245)
.....+|.++||+++ |++++|||.+. ++|.|+ ..-+.-...|.+.+|- .++... ++ ...++++..+..+.
T Consensus 253 ~~~~~~ai~~Al~~a-gi~p~dId~i~~hgtgt~-~~D~~E~~al~~~fg~--~~~v~s~K~~~GH~~~AaG~~~~~~~~ 328 (381)
T PRK05952 253 GKSAIAAIQQCLARS-GLTPEDIDYIHAHGTATR-LNDQREANLIQALFPH--RVAVSSTKGATGHTLGASGALGVAFSL 328 (381)
T ss_pred HHHHHHHHHHHHHHh-CCCHHHeeEEEccCCCCC-CCcHHHHHHHHHHcCC--CCeeecchhhhccChHHHHHHHHHHHH
Confidence 346789999999997 99999999987 445444 2233344556666662 233222 22 24455555566666
Q ss_pred HHHhcCCC
Q psy2407 126 NFILSKVS 133 (245)
Q Consensus 126 ~~i~sg~~ 133 (245)
..++.+..
T Consensus 329 ~~l~~~~i 336 (381)
T PRK05952 329 LALRHQQL 336 (381)
T ss_pred HHHhcCcc
Confidence 66666543
No 202
>PRK05656 acetyl-CoA acetyltransferase; Provisional
Probab=77.75 E-value=8.4 Score=35.16 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 56 INAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 56 ~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
..|+++||+++ |++++|||++-+.- .++.......+.||+.
T Consensus 294 ~~a~~~al~~a-gl~~~dId~~e~~d-----~f~~~~~~~~e~lg~~ 334 (393)
T PRK05656 294 VSATRRCLDKA-GWSLAELDLIEANE-----AFAAQSLAVGKELGWD 334 (393)
T ss_pred HHHHHHHHHHc-CCCHHHCCEEEecC-----ccHHHHHHHHHHhCCC
Confidence 58999999997 99999999987521 2334444556778873
No 203
>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases. This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt
Probab=77.61 E-value=8.4 Score=35.04 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCC
Q psy2407 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL 101 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl 101 (245)
...|+++|++++ |++++|||.+-+.-+. +...-...+.||+
T Consensus 288 ~~~a~~~a~~~A-gi~~~did~~e~~d~f-----a~~~~~~~e~lG~ 328 (386)
T TIGR01930 288 PVPAIPKALKKA-GLSISDIDLFEINEAF-----AAQVLACIKELGL 328 (386)
T ss_pred HHHHHHHHHHHc-CCCHHHCCeeehcchh-----HHHHHHHHHHhCC
Confidence 358999999997 9999999988543222 2223334577887
No 204
>PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed
Probab=76.74 E-value=11 Score=34.87 Aligned_cols=29 Identities=10% Similarity=0.022 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEEEEec
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELIITCSE 82 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~ 82 (245)
.-...|+++|++++ |++++|||++-+.-+
T Consensus 309 ~~~~~a~~~al~~A-Gl~~~DiD~~Ei~d~ 337 (428)
T PRK08963 309 LGPAYATPLALERA-GLTLADLTLIDMHEA 337 (428)
T ss_pred hHHHHHHHHHHHHc-CCCHHHCCEEEEccc
Confidence 34567899999997 999999999876544
No 205
>PRK08256 lipid-transfer protein; Provisional
Probab=76.69 E-value=7.7 Score=35.29 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
....|+++|++++ |++++|||++-+.-+ ++...-...+.||+.
T Consensus 265 ~~~~a~~~a~~~a-g~~~~DiD~~ei~d~-----f~~~~l~~le~lg~~ 307 (391)
T PRK08256 265 MTRAAAQQVYEQA-GIGPEDIDVVELHDC-----FSANELLTYEALGLC 307 (391)
T ss_pred HHHHHHHHHHHHc-CCCHHHCCEEeeccC-----CcHHHHHHHHHcCCC
Confidence 3568999999997 999999999865433 234444556778874
No 206
>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=75.21 E-value=5.7 Score=36.58 Aligned_cols=76 Identities=12% Similarity=0.043 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEE-EEeccCCCCCCcHHHHHHHHcCCCCCcceee----ec-CcchhHHHHHHHHHHH
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELII-TCSESGIDFGKSMSTYIHHYLGLNRNCRLFE----LK-QACYSCTAGLQMAINF 127 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li-~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~d----v~-~~C~~~~~aL~~A~~~ 127 (245)
-..++.++||+++ |++++|||.+- ++|.|+ ..-+.-...|.+.+|-. ..+... ++ .-.++++..+..+...
T Consensus 287 ~~~~a~~~Al~~a-gi~~~did~ie~hgtgt~-~~D~~E~~Al~~~fg~~-~~~v~s~K~~~GH~~~AaG~~~li~~~l~ 363 (418)
T PRK07910 287 RAGHAMTRAIELA-GLTPGDIDHVNAHATGTS-VGDVAEGKAINNALGGH-RPAVYAPKSALGHSVGAVGAVESILTVLA 363 (418)
T ss_pred HHHHHHHHHHHHh-CCCHHHCCEEEcCCcCCC-CCCHHHHHHHHHHhCCC-CCceeCccccccccHHHHHHHHHHHHHHH
Confidence 4678999999997 99999999986 445444 33455567777778742 222212 22 2333444444444555
Q ss_pred HhcCC
Q psy2407 128 ILSKV 132 (245)
Q Consensus 128 i~sg~ 132 (245)
++.|.
T Consensus 364 l~~~~ 368 (418)
T PRK07910 364 LRDGV 368 (418)
T ss_pred HhcCc
Confidence 56553
No 207
>PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional
Probab=75.20 E-value=9.8 Score=34.99 Aligned_cols=79 Identities=11% Similarity=0.026 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHh-cCCCCcCCcCEEEE-EeccCCCCCCcHHHHHHHHcCCCC--Cccee----eec-CcchhHHHHHHH
Q psy2407 53 SFAINAAAPLIDN-LSNIDKNSIELIIT-CSESGIDFGKSMSTYIHHYLGLNR--NCRLF----ELK-QACYSCTAGLQM 123 (245)
Q Consensus 53 ~la~~Aa~~aL~~-a~g~~~~dId~li~-~t~~~~~~~p~~a~~l~~~LGl~~--~~~~~----dv~-~~C~~~~~aL~~ 123 (245)
.-..+|+++||++ + |++++|||+|-. +|.++ ..-+.-...+.+.+|-.. .++.- -++ ...++|+..+..
T Consensus 283 ~~~~~ai~~Al~~~A-gi~~~dId~ie~hgtgt~-~~D~~E~~al~~~~~~~~~~~~~v~s~K~~~GH~~~AaG~~~l~~ 360 (421)
T PTZ00050 283 RGARRCMENALKDGA-NININDVDYVNAHATSTP-IGDKIELKAIKKVFGDSGAPKLYVSSTKGGLGHLLGAAGAVESIV 360 (421)
T ss_pred HHHHHHHHHHHHhcc-CCChhhCCEEECCCccCC-CCCHHHHHHHHHHhccccCCCceEECccccccccHHHHHHHHHHH
Confidence 4467899999999 9 999999999874 44443 222233345566666421 22221 122 244555556666
Q ss_pred HHHHHhcCCC
Q psy2407 124 AINFILSKVS 133 (245)
Q Consensus 124 A~~~i~sg~~ 133 (245)
+...++.+..
T Consensus 361 ~~l~l~~~~i 370 (421)
T PTZ00050 361 TILSLYEQII 370 (421)
T ss_pred HHHHHHcCcc
Confidence 6666776643
No 208
>PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=75.02 E-value=5.2 Score=36.70 Aligned_cols=78 Identities=8% Similarity=-0.046 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEE-EEeccCCCCCCcHHHHHHHHcCCCCCcceee----ecC-cchhHHHHHHHHHH
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELII-TCSESGIDFGKSMSTYIHHYLGLNRNCRLFE----LKQ-ACYSCTAGLQMAIN 126 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li-~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~d----v~~-~C~~~~~aL~~A~~ 126 (245)
.-..+|+++||+++ |++++|||.|- ++|.|+ ..-+.-...+.+.+|-...++.-. +++ -.++++..+..+..
T Consensus 288 ~~~~~a~~~Al~~A-gi~p~dId~i~~hgtgt~-~~D~~E~~al~~~fg~~~~~~v~s~K~~~GH~~gAaG~~~~~~~~l 365 (424)
T PRK06333 288 EGARRAMLIALRQA-GIPPEEVQHLNAHATSTP-VGDLGEVAAIKKVFGHVSGLAVSSTKSATGHLLGAAGGVEAIFTIL 365 (424)
T ss_pred HHHHHHHHHHHHHc-CCCHHHCCEEeccCCCCc-cchHHHHHHHHHHhCCCCCceeECcccchhhhHHHHHHHHHHHHHH
Confidence 45678999999997 99999999986 444443 223344556667776311222211 222 23344444444555
Q ss_pred HHhcCC
Q psy2407 127 FILSKV 132 (245)
Q Consensus 127 ~i~sg~ 132 (245)
.++.|.
T Consensus 366 ~l~~g~ 371 (424)
T PRK06333 366 ALRDQI 371 (424)
T ss_pred HHhcCC
Confidence 666653
No 209
>PRK06157 acetyl-CoA acetyltransferase; Validated
Probab=75.01 E-value=12 Score=34.17 Aligned_cols=43 Identities=14% Similarity=0.042 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCCC--cCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCC
Q psy2407 55 AINAAAPLIDNLSNID--KNSIELIITCSESGIDFGKSMSTYIHHYLGLNR 103 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~--~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~ 103 (245)
...|+++|++++ |++ ++|||.+-+.-. +....-...+.||+.+
T Consensus 268 ~~~aa~~a~~~A-Gl~~~~~Did~~Ei~D~-----Fs~~~l~~~e~lGl~~ 312 (398)
T PRK06157 268 TRIAARKAYREA-GITDPREELSMAEVHDC-----FSITELVTMEDLGLSE 312 (398)
T ss_pred HHHHHHHHHHHc-CCCCchhcCCEEEEecC-----ChHHHHHHHHHcCCCC
Confidence 567999999997 998 799998864322 2233445567788743
No 210
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=74.98 E-value=6.8 Score=32.82 Aligned_cols=65 Identities=12% Similarity=0.108 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeec
Q psy2407 46 LPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK 111 (245)
Q Consensus 46 ~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~ 111 (245)
.....-.+.....++.+|.++ |++.+|||.|+++..-+.+..--++.-+++-|.+..++|.+.|+
T Consensus 32 ~~~r~hse~l~~~i~~ll~~~-~~~~~dld~iav~~GPGSFTGlRIG~~~AkgLA~~l~iplvgvs 96 (220)
T COG1214 32 KLKRNHAERLMPMIDELLKEA-GLSLQDLDAIAVAKGPGSFTGLRIGVAFAKGLALALNIPLVGVS 96 (220)
T ss_pred eccccHHHHHHHHHHHHHHHc-CCCHHHCCEEEEccCCCcccchhhHHHHHHHHHHHcCCCEEEeC
Confidence 445556788889999999996 99999999999875544333333444445555544456677664
No 211
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=73.84 E-value=11 Score=34.23 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
-...|+++|++++ |++++|||.+-..-. +........+.||+.
T Consensus 286 ~~~~a~~~a~~~A-gi~~~did~~e~~d~-----f~~~~~~~~e~lg~~ 328 (386)
T cd00751 286 GPVPAIPKALKRA-GLTLDDIDLIEINEA-----FAAQALACLKELGLD 328 (386)
T ss_pred hHHHHHHHHHHHc-CCCHHHcCEEEeech-----hHHHHHHHHHHhCCC
Confidence 3468999999997 999999998865321 223334446778873
No 212
>PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=73.51 E-value=12 Score=34.44 Aligned_cols=78 Identities=6% Similarity=-0.013 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEE-EEeccCCCCCCcHHHHHHHHcCCC--CCcceeee----c-CcchhHHHHHHHHH
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELII-TCSESGIDFGKSMSTYIHHYLGLN--RNCRLFEL----K-QACYSCTAGLQMAI 125 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li-~~t~~~~~~~p~~a~~l~~~LGl~--~~~~~~dv----~-~~C~~~~~aL~~A~ 125 (245)
....|.++||+++ |++++|||.|- ++|.|+ ..-+.-...|.+.+|-. ..++.-.+ + ...++++..+..+.
T Consensus 279 ~~~~a~~~Al~~a-gi~~~did~ie~hgtgt~-~~D~~E~~al~~~fg~~~~~~~~v~s~K~~~GH~~~AaG~~~~~~~~ 356 (414)
T PRK08722 279 GGALAMEAAMRDA-GVTGEQIGYVNAHGTSTP-AGDVAEIKGIKRALGEAGSKQVLVSSTKSMTGHLLGAAGSVEAIITV 356 (414)
T ss_pred HHHHHHHHHHHHc-CCCHHHcCEEEccCccCC-CCCHHHHHHHHHHhcccCCCCceeeCcccccccchHHHHHHHHHHHH
Confidence 4578899999997 99999999986 445554 33345566677777631 12333222 2 23445555555555
Q ss_pred HHHhcCCC
Q psy2407 126 NFILSKVS 133 (245)
Q Consensus 126 ~~i~sg~~ 133 (245)
..++.|..
T Consensus 357 l~l~~~~i 364 (414)
T PRK08722 357 MSLVDQIV 364 (414)
T ss_pred HHHhcCcc
Confidence 56666643
No 213
>TIGR02445 fadA fatty oxidation complex, beta subunit FadA. This subunit of the FadBA complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit. This protein is almost always located adjacent to FadB (TIGR02437). The FadBA complex is the major complex active for beta-oxidation of fatty acids in E. coli.
Probab=73.41 E-value=18 Score=32.92 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCC
Q psy2407 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL 101 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl 101 (245)
...|++++++++ |++++|||.+-+.- .+....-...+.||+
T Consensus 282 ~~~a~~~al~~A-Gi~p~DId~~Ei~d-----aFa~~~l~~~e~lg~ 322 (385)
T TIGR02445 282 PVPATQKALKRA-GLSISDIDVFELNE-----AFAAQALPCLKDLGL 322 (385)
T ss_pred HHHHHHHHHHHc-CCCHHHcCEEEEcc-----ccHHHHHHHHHHcCC
Confidence 468899999997 99999999886532 223334455677886
No 214
>TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade. This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event.
Probab=73.39 E-value=7.5 Score=35.28 Aligned_cols=49 Identities=8% Similarity=-0.225 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
.+...++.++.|++. |++++|||.+++....+...... -..+.+.++++
T Consensus 204 ~~~~~~~~~~~l~~~-g~~~~did~~i~H~p~~~~~~k~-~~~~l~~~~~~ 252 (379)
T TIGR01835 204 LNAFENAWNDYAKRT-GLSLADFAAFCFHVPFTKMGLKA-LRHILKKNYED 252 (379)
T ss_pred HHHHHHHHHHHHHHh-CCCHHHcCEEEECCCCCcHHHHH-HHHHHhhcccc
Confidence 345667888889996 99999999998765332111122 22355666663
No 215
>smart00825 PKS_KS Beta-ketoacyl synthase. The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.
Probab=72.91 E-value=9.9 Score=34.68 Aligned_cols=80 Identities=9% Similarity=0.003 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCcCEEEEE-eccCCCCCCcHHHHHHHHcCCCC----Ccceee----ec-CcchhHHHHH
Q psy2407 52 VSFAINAAAPLIDNLSNIDKNSIELIITC-SESGIDFGKSMSTYIHHYLGLNR----NCRLFE----LK-QACYSCTAGL 121 (245)
Q Consensus 52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~-t~~~~~~~p~~a~~l~~~LGl~~----~~~~~d----v~-~~C~~~~~aL 121 (245)
......++++||+++ |++++|||.+... +.++ .....-...+...+|... .++... ++ ...++++..+
T Consensus 278 ~~~~~~a~~~al~~A-gl~~~dId~i~~h~tgt~-~~d~~E~~al~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~l 355 (424)
T smart00825 278 GPAQARLIRQALARA-GVDPADVDYVEAHGTGTP-LGDPIEAEALAAVFGQGRPRDGPLLLGSVKSNIGHLEAAAGVAGL 355 (424)
T ss_pred HHHHHHHHHHHHHHh-CCCHHHccEEEeeCCCCC-CCCHHHHHHHHHHHhccCCCCCceEEeccccccCCcccchhHHHH
Confidence 455678999999997 9999999998754 4444 222333445566665321 122211 12 2334445555
Q ss_pred HHHHHHHhcCCC
Q psy2407 122 QMAINFILSKVS 133 (245)
Q Consensus 122 ~~A~~~i~sg~~ 133 (245)
..+...++.|..
T Consensus 356 ~~~~~~l~~~~i 367 (424)
T smart00825 356 IKVVLALRHGTI 367 (424)
T ss_pred HHHHHHHhCCCC
Confidence 555556666543
No 216
>PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=72.86 E-value=6.8 Score=36.11 Aligned_cols=78 Identities=10% Similarity=0.040 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEE-eccCCCCCCcHHHHHHHHcCCC-CCcceee----ec-CcchhHHHHHHHHHH
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITC-SESGIDFGKSMSTYIHHYLGLN-RNCRLFE----LK-QACYSCTAGLQMAIN 126 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~-t~~~~~~~p~~a~~l~~~LGl~-~~~~~~d----v~-~~C~~~~~aL~~A~~ 126 (245)
-..++.++||+++ |++++|||.+... |.++ ...+.-...|.+.+|-. .+.+... ++ ...++++..+..+..
T Consensus 290 ~~~~ai~~AL~~a-gi~p~dId~i~~Hgtgt~-~~d~~E~~al~~~~~~~~~~~pv~s~k~~~Gh~~~AsG~~~~~~~~l 367 (425)
T PRK06501 290 PAIGAIRAALADA-GLTPEQIDYINAHGTSTP-ENDKMEYLGLSAVFGERLASIPVSSNKSMIGHTLTAAGAVEAVFSLL 367 (425)
T ss_pred HHHHHHHHHHHHc-CCCHHHcCEEEecCccCc-chHHHHHHHHHHHhcccCCCcEEECCCcccCCCchhhhHHHHHHHHH
Confidence 3568899999997 9999999999854 4444 23344444555555531 1223221 22 234455555555555
Q ss_pred HHhcCCC
Q psy2407 127 FILSKVS 133 (245)
Q Consensus 127 ~i~sg~~ 133 (245)
.++.|..
T Consensus 368 ~l~~~~i 374 (425)
T PRK06501 368 TIQTGRL 374 (425)
T ss_pred HHhcCcC
Confidence 6666644
No 217
>PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=72.66 E-value=9.6 Score=34.92 Aligned_cols=76 Identities=9% Similarity=-0.011 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEE-EEeccCCCCCCcHHHHHHHHcCCCCCcceeee----cC-cchhHHHHHHHHHH
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELII-TCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL----KQ-ACYSCTAGLQMAIN 126 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li-~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv----~~-~C~~~~~aL~~A~~ 126 (245)
+-..++.+++|+++ +++++|||.+. ++|.|+ ..-+.-...|.+.+|- ..+.-.+ ++ -+++++..+..+..
T Consensus 275 ~~~~~ai~~AL~~A-gi~p~dId~I~~Hgtgt~-~~D~~E~~Ai~~~fg~--~~pv~s~K~~~GH~~~AaG~~~~~~~~~ 350 (405)
T PRK09116 275 ETMQIAMELALKDA-GLAPEDIGYVNAHGTATD-RGDIAESQATAAVFGA--RMPISSLKSYFGHTLGACGALEAWMSIE 350 (405)
T ss_pred HHHHHHHHHHHHHh-CCCHHHcCEEECcCccCC-CCCHHHHHHHHHHhCC--CCeeECcchhhcccHHHHHHHHHHHHHH
Confidence 44568999999997 99999999997 455554 3345556677777773 2332222 21 23444444444455
Q ss_pred HHhcCC
Q psy2407 127 FILSKV 132 (245)
Q Consensus 127 ~i~sg~ 132 (245)
.++.|.
T Consensus 351 ~l~~~~ 356 (405)
T PRK09116 351 MMNEGW 356 (405)
T ss_pred HHHcCc
Confidence 555553
No 218
>PLN02287 3-ketoacyl-CoA thiolase
Probab=72.38 E-value=10 Score=35.48 Aligned_cols=71 Identities=11% Similarity=0.051 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCC---cc----eeeecCcchhHHHHHHHHHHH
Q psy2407 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRN---CR----LFELKQACYSCTAGLQMAINF 127 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~---~~----~~dv~~~C~~~~~aL~~A~~~ 127 (245)
...|+++||+++ |++++|||++-+. + .+....-...+.||+.+. .. ++..-.|++|....+.++.++
T Consensus 333 ~~~A~~~al~~A-gl~~~DID~~Ei~----d-aFa~~~l~~~e~lG~~~~pvN~sGG~la~GHp~gAsG~~~v~~l~~qL 406 (452)
T PLN02287 333 PAVAIPAAVKAA-GLELDDIDLFEIN----E-AFASQFVYCCKKLGLDPEKVNVNGGAIALGHPLGATGARCVATLLHEM 406 (452)
T ss_pred HHHHHHHHHHHc-CCCHHHCCEEEec----c-hHHHHHHHHHHHcCCCccccCCCCcHHhccCcHHHHHHHHHHHHHHHH
Confidence 468999999997 9999999998432 1 122222233567887321 11 112223566665566666665
Q ss_pred HhcC
Q psy2407 128 ILSK 131 (245)
Q Consensus 128 i~sg 131 (245)
-+.|
T Consensus 407 ~~~~ 410 (452)
T PLN02287 407 KRRG 410 (452)
T ss_pred HhcC
Confidence 5433
No 219
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.
Probab=71.95 E-value=25 Score=30.60 Aligned_cols=86 Identities=14% Similarity=0.187 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCC-cce-----e-eec-CcchhHHHHHH
Q psy2407 51 PVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRN-CRL-----F-ELK-QACYSCTAGLQ 122 (245)
Q Consensus 51 ~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~-~~~-----~-dv~-~~C~~~~~aL~ 122 (245)
..+...++++++|++. +++ +|||.++...... +..-..+.+.|++++. +.. + +++ .+|++...+|.
T Consensus 221 ~~~~~~~~~~~~l~~~-~~~-~~i~~~~~h~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Gn~~sa~~~~~L~ 294 (324)
T cd00827 221 AHKLIAKVVRKALDRA-GLS-EDIDYFVPHQPNG----KKILEAVAKKLGGPPEKASQTRWILLRRVGNMYAASILLGLA 294 (324)
T ss_pred HhHHHHHHHHHHHHHc-ccc-cccceeeccCchH----HHHHHHHHHHccchHhhhccchhhHHHHhCchHHHHHHHHHH
Confidence 4566778888999996 999 9999887543221 1556788899998421 111 2 233 36666666665
Q ss_pred HHHHHHhcCCC-CCCeEEEEEecc
Q psy2407 123 MAINFILSKVS-PGAKALVIATDI 145 (245)
Q Consensus 123 ~A~~~i~sg~~-~~~~aLVv~~e~ 145 (245)
.+ ++.+.. +++++|+++.-.
T Consensus 295 ~~---~~~~~~~~Gd~vl~~~~G~ 315 (324)
T cd00827 295 SL---LESGKLKAGDRVLLFSYGS 315 (324)
T ss_pred HH---HhcCCCCCCCEEEEEEecc
Confidence 44 444421 457888876543
No 220
>PRK08235 acetyl-CoA acetyltransferase; Provisional
Probab=69.83 E-value=12 Score=34.30 Aligned_cols=70 Identities=7% Similarity=0.007 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCC---c----ceeeecCcchhHHHHHHHHHH
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRN---C----RLFELKQACYSCTAGLQMAIN 126 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~---~----~~~dv~~~C~~~~~aL~~A~~ 126 (245)
....|+++|++++ |++++|||++-+ . +.++...-...+.||+.+. . .++..-.|++|....+.++.+
T Consensus 292 ~~~~a~~~al~~a-gl~~~did~~e~----~-d~f~~~~l~~~e~lg~~~~pvN~~GG~la~Ghp~gasG~~~~~~l~~q 365 (393)
T PRK08235 292 TPGYAINALLEKT-GKTVEDIDLFEI----N-EAFAAVALASTEIAGIDPEKVNVNGGAVALGHPIGASGARIIVTLIHE 365 (393)
T ss_pred hHHHHHHHHHHHh-CCCHHHCCeehh----c-chhHHHHHHHHHHhCCCcccCCcCCchHHhCCcHHHHHHHHHHHHHHH
Confidence 3468999999997 999999998853 2 2233334455678887321 1 112222356666666666666
Q ss_pred HHh
Q psy2407 127 FIL 129 (245)
Q Consensus 127 ~i~ 129 (245)
+-.
T Consensus 366 L~~ 368 (393)
T PRK08235 366 LKR 368 (393)
T ss_pred HHh
Confidence 543
No 221
>PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase
Probab=69.49 E-value=12 Score=34.63 Aligned_cols=46 Identities=9% Similarity=0.055 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEEE-EeccCCCCCCcHHHHHHHHcC
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELIIT-CSESGIDFGKSMSTYIHHYLG 100 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li~-~t~~~~~~~p~~a~~l~~~LG 100 (245)
+-..+|+++||+++ |++++|||.|-. +|.|+ ..-+.-...+.+.+|
T Consensus 299 ~~~~~a~~~Al~~A-gi~~~dId~ve~hgtgt~-~~D~~E~~ai~~~~~ 345 (437)
T PLN02836 299 RGAVLAMTRALQQS-GLHPNQVDYVNAHATSTP-LGDAVEARAIKTVFS 345 (437)
T ss_pred HHHHHHHHHHHHHc-CCCHhHcCEEEccCCcCc-CcCHHHHHHHHHHhc
Confidence 34567899999997 999999999874 34443 223333444555554
No 222
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.
Probab=68.89 E-value=15 Score=33.33 Aligned_cols=80 Identities=9% Similarity=-0.031 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCcCEEEEE-eccCCCCCCcHHHHHHHHcCCC----CCccee----eec-CcchhHHHHH
Q psy2407 52 VSFAINAAAPLIDNLSNIDKNSIELIITC-SESGIDFGKSMSTYIHHYLGLN----RNCRLF----ELK-QACYSCTAGL 121 (245)
Q Consensus 52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~-t~~~~~~~p~~a~~l~~~LGl~----~~~~~~----dv~-~~C~~~~~aL 121 (245)
..-..+++++||+++ |++++|||.+... |.++ ..-+.-...|...++-. ...+.. .++ ...++++..+
T Consensus 278 ~~~~~~a~~~al~~A-gi~~~did~i~~hgtgt~-~~D~~E~~al~~~f~~~~~~~~~~~v~s~k~~~Gh~~~aag~~~l 355 (421)
T cd00833 278 GEAQAALIRRAYARA-GVDPSDIDYVEAHGTGTP-LGDPIEVEALAKVFGGSRSADQPLLIGSVKSNIGHLEAAAGLAGL 355 (421)
T ss_pred HHHHHHHHHHHHHHh-CCCHHHCcEEEeeCCCCC-CCCHHHHHHHHHHHhccCCCCCceeeecCcCccccchhhhHHHHH
Confidence 456678999999997 9999999998754 4443 22223334444444421 111211 122 2455666666
Q ss_pred HHHHHHHhcCCC
Q psy2407 122 QMAINFILSKVS 133 (245)
Q Consensus 122 ~~A~~~i~sg~~ 133 (245)
..+...++.|..
T Consensus 356 ~~~~~~l~~~~i 367 (421)
T cd00833 356 IKVVLALEHGVI 367 (421)
T ss_pred HHHHHHHhcCCc
Confidence 666667776644
No 223
>PRK07108 acetyl-CoA acetyltransferase; Provisional
Probab=68.62 E-value=11 Score=34.35 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEE
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELII 78 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li 78 (245)
-...|+++||+++ |++++|||++-
T Consensus 291 ~~~~a~~~al~~a-gl~~~Did~~e 314 (392)
T PRK07108 291 GPVFAVPKLLKQA-GLKVDDIDLWE 314 (392)
T ss_pred hHHHHHHHHHHHc-CCCHHHcCchH
Confidence 4478999999997 99999999875
No 224
>PLN03169 chalcone synthase family protein; Provisional
Probab=68.47 E-value=24 Score=32.18 Aligned_cols=81 Identities=9% Similarity=-0.008 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcce-----e-eec-CcchhHHHHHHHHHHHH
Q psy2407 56 INAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL-----F-ELK-QACYSCTAGLQMAINFI 128 (245)
Q Consensus 56 ~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~-----~-dv~-~~C~~~~~aL~~A~~~i 128 (245)
...++++|+++ |++++|||.+.+.- .+..+.+-..+++.||++++... + +.+ .++++-..+|..+.
T Consensus 284 ~~~i~~~L~~~-gl~~~did~~~~v~---Hq~n~~il~~v~~~Lgl~~ek~~~s~~~l~~~GNtsSasip~~L~~~~--- 356 (391)
T PLN03169 284 EGFCKKLMKKA-GLVEKDYNDLFWAV---HPGGPAILNRLEKKLKLAPEKLECSRRALMDYGNVSSNTIVYVLEYMR--- 356 (391)
T ss_pred HHHHHHHHHHc-CCCCCCCCcceEEe---cCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCchHhHHHHHHHHHH---
Confidence 34567888896 99999998443211 12234566788999999754332 2 343 46667677776543
Q ss_pred hcCCC----CCCeEEEEEe
Q psy2407 129 LSKVS----PGAKALVIAT 143 (245)
Q Consensus 129 ~sg~~----~~~~aLVv~~ 143 (245)
+.+.. +++.+|+++.
T Consensus 357 ~~~~~~~~~~gd~~ll~af 375 (391)
T PLN03169 357 EELKKKGEEDEEWGLILAF 375 (391)
T ss_pred HhhcccCCCCCcEEEEEEE
Confidence 33321 2356666553
No 225
>KOG1394|consensus
Probab=68.41 E-value=4.3 Score=36.57 Aligned_cols=57 Identities=12% Similarity=0.167 Sum_probs=38.2
Q ss_pred eeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEE-EEeccCCCCCCcHHHHHHHHcCC
Q psy2407 42 KSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELII-TCSESGIDFGKSMSTYIHHYLGL 101 (245)
Q Consensus 42 r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li-~~t~~~~~~~p~~a~~l~~~LGl 101 (245)
-|+..|+.+. .=++.|.++||+++ |+.|+|||.|= ++|+||. .-..-+..|.+.++-
T Consensus 291 ~HiT~P~~dG-~Ga~~am~raL~~A-gl~pe~i~YvNAHATST~~-GD~aE~~Ai~~vf~~ 348 (440)
T KOG1394|consen 291 YHITSPDPDG-AGAVLAMERALKDA-GLSPEDIDYVNAHATSTPL-GDAAEAEAIKRVFGE 348 (440)
T ss_pred cccCCCCCCc-chHHHHHHHHHHHc-CCChhhcCeeecccccCcC-chHHHHHHHHHHhcc
Confidence 4554454443 35677889999997 99999999986 6777763 222334556666664
No 226
>PRK06065 acetyl-CoA acetyltransferase; Provisional
Probab=68.15 E-value=8.6 Score=35.14 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCCCCc--CCcCEEEEEec
Q psy2407 55 AINAAAPLIDNLSNIDK--NSIELIITCSE 82 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~--~dId~li~~t~ 82 (245)
...|+++|++++ |+++ +|||.+-+.-+
T Consensus 264 ~~~a~~~a~~~a-Gi~~p~~diD~~ei~D~ 292 (392)
T PRK06065 264 VEFAARMAYKMA-GIERPRKEIDVAEPYDP 292 (392)
T ss_pred HHHHHHHHHHHc-CCCCchhhCcEEEecCC
Confidence 357999999997 9985 99999875433
No 227
>PRK09604 UGMP family protein; Validated
Probab=66.80 E-value=14 Score=32.97 Aligned_cols=30 Identities=10% Similarity=0.134 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCcCEEEEEe
Q psy2407 51 PVSFAINAAAPLIDNLSNIDKNSIELIITCS 81 (245)
Q Consensus 51 ~~~la~~Aa~~aL~~a~g~~~~dId~li~~t 81 (245)
-.+......+++|+++ |++++|||.|.++.
T Consensus 51 H~~~l~~~i~~~L~~~-~~~~~did~iavt~ 80 (332)
T PRK09604 51 HVENIVPLIEEALKEA-GLTLEDIDAIAVTA 80 (332)
T ss_pred HHHHHHHHHHHHHHHc-CCCHHHCCEEEEec
Confidence 3567777899999997 99999999988754
No 228
>PRK06633 acetyl-CoA acetyltransferase; Provisional
Probab=66.61 E-value=17 Score=33.25 Aligned_cols=70 Identities=9% Similarity=0.012 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHH--HHHcCCCC-------CcceeeecCcchhHHHHHHHH
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYI--HHYLGLNR-------NCRLFELKQACYSCTAGLQMA 124 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l--~~~LGl~~-------~~~~~dv~~~C~~~~~aL~~A 124 (245)
....|+++||+++ |++++|||++-+. + +.....+ .+.||+.. ...++..-.|++|....+.++
T Consensus 291 ~~~~a~~~Al~~A-Gl~p~DID~~ei~----d---afa~~~l~~~~~l~~~~~~vN~sGg~~a~GHplgAtG~~~~~~~~ 362 (392)
T PRK06633 291 APVPASQKALSKA-GWSVNDLEVIEVN----E---AFAAQSIYVNREMKWDMEKVNINGGAIAIGHPIGASGGRVLITLI 362 (392)
T ss_pred HHHHHHHHHHHHc-CCCHHHcCeeehh----h---HHHHHHHHHHhhhCCCccccCCCCchHhhCCcHHHHHHHHHHHHH
Confidence 3468999999997 9999999988632 1 1111122 34455421 111222234677777777777
Q ss_pred HHHHhcC
Q psy2407 125 INFILSK 131 (245)
Q Consensus 125 ~~~i~sg 131 (245)
.++-+.|
T Consensus 363 ~qL~~~~ 369 (392)
T PRK06633 363 HGLRRAK 369 (392)
T ss_pred HHHHhcC
Confidence 7765543
No 229
>PRK06365 acetyl-CoA acetyltransferase; Provisional
Probab=66.57 E-value=22 Score=32.95 Aligned_cols=43 Identities=23% Similarity=0.116 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCCCC--cCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 54 FAINAAAPLIDNLSNID--KNSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~--~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
....|+++|++++ |++ ++|||.+-+.-++ +...-...+.||+.
T Consensus 294 ~~~~a~~~a~~~A-Gl~~~~~DiD~~Ei~D~F-----a~~~l~~lE~lGl~ 338 (430)
T PRK06365 294 AGRMAAKEAYEMA-GITDPLNDLDLIELHDAY-----TSSEIQTYEDLGLC 338 (430)
T ss_pred HHHHHHHHHHHHc-CCCCCHHHCCEEEeecCC-----cHHHHHHHHHcCCC
Confidence 4458999999997 997 7999998764333 23334556778764
No 230
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=66.43 E-value=55 Score=27.41 Aligned_cols=97 Identities=10% Similarity=0.121 Sum_probs=52.0
Q ss_pred eEEeEecCCceecHH-HHHHHcCCChHHHhhccceeeeecCCCCC---HHHHHHHHHHHHHHhcCCCCcCCcCEEEEEec
Q psy2407 7 EAINLYGGSVFIDVI-ELAKYRKLDTVRFENLLMQQKSVSLPYED---PVSFAINAAAPLIDNLSNIDKNSIELIITCSE 82 (245)
Q Consensus 7 ~~i~~~lP~~~v~~~-~~~~~~~~~~~~~~~~Gi~~r~~~~~~e~---~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~ 82 (245)
.-||..+|...-+.+ |+-... +.+ +.+++.-|+...+.+ ...|-..+.+.|++ +.-..+|.|.++++
T Consensus 6 ~RIGlIVpSSntTmE~ef~~m~--~~e---rvs~H~sRmpl~~VT~EeL~~M~~~t~~aAl~----Lada~vdvI~Y~Ct 76 (238)
T COG3473 6 KRIGLIVPSSNTTMEPEFWRML--PSE---RVSVHTSRMPLKNVTPEELLKMESYTERAALE----LADAGVDVIVYGCT 76 (238)
T ss_pred hceeEEEecCCCccchHHHHhh--hhc---cceeeecccccccCCHHHHHHHHHHHHHHHHh----cCccccCEEEEecc
Confidence 357778887654443 221111 112 344444334333333 44455555555554 33456899999888
Q ss_pred cCCCC-CCcHHHHHHHHcCCCCCcceeeecC
Q psy2407 83 SGIDF-GKSMSTYIHHYLGLNRNCRLFELKQ 112 (245)
Q Consensus 83 ~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~ 112 (245)
++... .|.-...|+.++.-..+++++.-..
T Consensus 77 sgS~i~G~~~d~ei~~~ie~~~~v~vvTts~ 107 (238)
T COG3473 77 SGSLIGGPGYDKEIAQRIEEAKGVPVVTTST 107 (238)
T ss_pred ceeeecCCchhHHHHHHHHhccCCceeechH
Confidence 76433 4666777777766434556654443
No 231
>PLN02644 acetyl-CoA C-acetyltransferase
Probab=65.03 E-value=21 Score=32.61 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCC
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL 101 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl 101 (245)
....++++|++++ |++++|||.+-+.-. +....-...+.||+
T Consensus 292 ~~~~a~~~al~~A-gi~~~Did~~Ei~d~-----f~~~~l~~~e~lg~ 333 (394)
T PLN02644 292 APALAIPKALKHA-GLEASQVDYYEINEA-----FSVVALANQKLLGL 333 (394)
T ss_pred hHHHHHHHHHHHc-CCCHHHCCEEEeCcH-----HHHHHHHHHHHhCC
Confidence 3346999999997 999999998875222 22334455677887
No 232
>PRK06059 lipid-transfer protein; Provisional
Probab=64.88 E-value=21 Score=32.49 Aligned_cols=42 Identities=14% Similarity=0.060 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
...|+++|++++ |++++|||++-+.-++ ........+.||+.
T Consensus 275 ~~~a~~~a~~~a-gl~~~Did~~El~d~f-----~~~~l~~~e~lGl~ 316 (399)
T PRK06059 275 KDQILDAAYAEA-GIGPEDLSLAEVYDLS-----TALELDWYEHLGLC 316 (399)
T ss_pred HHHHHHHHHHHc-CCCHHHCcEEeecccC-----hHHHHHHHHHcCCC
Confidence 357899999997 9999999988654332 12233334778874
No 233
>PRK06954 acetyl-CoA acetyltransferase; Provisional
Probab=62.60 E-value=15 Score=33.52 Aligned_cols=70 Identities=7% Similarity=-0.017 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCC-------cceeeecCcchhHHHHHHHHHH
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRN-------CRLFELKQACYSCTAGLQMAIN 126 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~-------~~~~dv~~~C~~~~~aL~~A~~ 126 (245)
-...|+++||+++ |++++|||++-+.-. +....-.-.+.||+.+. ..++..-.|++|....++++.+
T Consensus 296 ~~~~a~~~al~~a-gl~~~Did~~ei~d~-----fa~~~l~~~e~lg~~~~~vN~~GG~~a~Ghp~gasG~~~~~~~~~q 369 (397)
T PRK06954 296 APVGAIRKLFEKN-GWRAAEVDLFEINEA-----FAVVTMAAMKEHGLPHEKVNVNGGACALGHPIGASGARILVTLIGA 369 (397)
T ss_pred hHHHHHHHHHHHc-CCCHHHCCEEehhhH-----HHHHHHHHHHHhCCCcccCCcCCChHHhcccHHHHHHHHHHHHHHH
Confidence 3468999999997 999999998842211 11112222466886321 1112222355555555555555
Q ss_pred HHh
Q psy2407 127 FIL 129 (245)
Q Consensus 127 ~i~ 129 (245)
+-.
T Consensus 370 L~~ 372 (397)
T PRK06954 370 LRA 372 (397)
T ss_pred HHh
Confidence 543
No 234
>PLN03171 chalcone synthase-like protein; Provisional
Probab=61.93 E-value=43 Score=30.64 Aligned_cols=88 Identities=8% Similarity=0.032 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHHh---------cCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcce-----e-eec-C
Q psy2407 49 EDPVSFAINAAAPLIDN---------LSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL-----F-ELK-Q 112 (245)
Q Consensus 49 e~~~~la~~Aa~~aL~~---------a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~-----~-dv~-~ 112 (245)
.....+..++.+++|++ . |++++||+.++ ++. .+.+-..+.+.||++++... + +.+ .
T Consensus 275 ~~vp~~i~~~l~~~l~~~l~~~~~~~~-g~~~~di~~~~--Hq~----~~~il~~v~~~Lgl~~ek~~~s~~~l~~yGNt 347 (399)
T PLN03171 275 RQVPGLIGDNIERCLLDAFAPLLGGDG-GAEWNDLFWAV--HPG----SSAILDQVDAALGLEPEKLAASRRVLSDYGNM 347 (399)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhccccc-CCCcccceEEE--cCC----cHHHHHHHHHHcCCCHHHhHHHHHHHHHhCcc
Confidence 34456666666776664 4 78889998764 222 33566788999999754332 2 233 3
Q ss_pred cchhHHHHHHHHHHHHhcCCCCC---CeEEEEEe
Q psy2407 113 ACYSCTAGLQMAINFILSKVSPG---AKALVIAT 143 (245)
Q Consensus 113 ~C~~~~~aL~~A~~~i~sg~~~~---~~aLVv~~ 143 (245)
.+++-..+|..+..-.+.+..++ +++|+++.
T Consensus 348 ssaSip~~L~~~~~~~~~~~~~G~~~d~vll~~f 381 (399)
T PLN03171 348 FGATVIFALDELRRQMEEAAAAGAWPELGVMMAF 381 (399)
T ss_pred hhhhHHHHHHHHHhhHhhcCCCCCCcceEEEEEE
Confidence 55555566665432221110133 56766654
No 235
>PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated
Probab=61.85 E-value=22 Score=32.59 Aligned_cols=29 Identities=7% Similarity=0.148 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCCCcCCcCEEEE-EeccC
Q psy2407 55 AINAAAPLIDNLSNIDKNSIELIIT-CSESG 84 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~~dId~li~-~t~~~ 84 (245)
..+++++||+++ |++++|||.|.. +|.|+
T Consensus 283 ~~~a~~~Al~~A-gi~~~dId~v~~hgtgt~ 312 (410)
T PRK07103 283 EMRVIRAALRRA-GLGPEDIDYVNPHGTGSP 312 (410)
T ss_pred HHHHHHHHHHHc-CCCHHHCCEEEccCCCCC
Confidence 358999999997 999999999874 44443
No 236
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=61.65 E-value=22 Score=26.72 Aligned_cols=59 Identities=10% Similarity=0.050 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHH----HHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHc-CCCCCcceeeec
Q psy2407 49 EDPVSFAINAAAPL----IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYL-GLNRNCRLFELK 111 (245)
Q Consensus 49 e~~~~la~~Aa~~a----L~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~L-Gl~~~~~~~dv~ 111 (245)
++..+-..+|.+++ +++. +++++||-.+++ |.|+|-..-. .+..++.+ |+ .++|.++.+
T Consensus 12 ~nt~e~I~~at~eLl~~ii~~N-~l~~edivSv~F-T~T~DL~a~F-PA~aaR~~~Gw-~~Vplmc~q 75 (117)
T TIGR01796 12 RNEAEEIGEAVAELLTELMERN-ELTPEDLISVIF-TVTEDLHADF-PAAAARGLPGW-TDVPVMCAQ 75 (117)
T ss_pred CCCHHHHHHHHHHHHHHHHHHc-CCCHHHEEEEEE-EecCcccccC-hHHHHHhccCC-CCcceeccC
Confidence 33344444555544 4565 999999988887 4555433212 23455666 99 578877765
No 237
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=59.12 E-value=9.4 Score=31.35 Aligned_cols=34 Identities=6% Similarity=0.092 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEec
Q psy2407 48 YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSE 82 (245)
Q Consensus 48 ~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~ 82 (245)
.....+......+++|+++ +++.+|||.+.++..
T Consensus 30 ~~~h~~~l~~~i~~~l~~~-~~~~~~i~~iav~~G 63 (202)
T TIGR03725 30 GRNHSEILLPMIEELLAEA-GLSLQDLDAIAVGVG 63 (202)
T ss_pred hHHHHHHHHHHHHHHHHHc-CCCHHHCCEEEEecC
Confidence 3445677778899999996 999999999987644
No 238
>PRK08131 acetyl-CoA acetyltransferase; Provisional
Probab=59.10 E-value=25 Score=32.24 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCC
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL 101 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl 101 (245)
-...|+++|++++ |++++|||++-+.-.+ ....-...+.||+
T Consensus 297 ~~~~a~~~a~~~a-gl~~~did~~ei~d~F-----a~~~l~~~e~lg~ 338 (401)
T PRK08131 297 GPVEAIKKALARA-GLTLDDMDIIEINEAF-----ASQVLGCLKGLGV 338 (401)
T ss_pred hHHHHHHHHHHHc-CCCHHHCCeehhccHH-----HHHHHHHHHHcCC
Confidence 4568999999997 9999999988643221 1112234567887
No 239
>PRK14878 UGMP family protein; Provisional
Probab=58.45 E-value=33 Score=30.45 Aligned_cols=46 Identities=7% Similarity=-0.062 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCC-----CcHHHHHHHHcCC
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFG-----KSMSTYIHHYLGL 101 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~-----p~~a~~l~~~LGl 101 (245)
....+.+++|+++ |++++|||.|.+... |-... -+.|..++..++.
T Consensus 47 ~l~~~i~~~l~~a-~~~~~did~Iavt~g-PG~~~~lrvg~~~Ak~la~~~~~ 97 (323)
T PRK14878 47 VAPELLRKALEKA-GISIEDIDAVAVSQG-PGLGPALRVGATAARALALKYNK 97 (323)
T ss_pred HHHHHHHHHHHHc-CCCHHHCCEEEEecC-CCcccchHHHHHHHHHHHHHhCC
Confidence 3447889999997 999999999887543 32221 1235555666665
No 240
>PLN03170 chalcone synthase; Provisional
Probab=57.06 E-value=30 Score=31.76 Aligned_cols=47 Identities=11% Similarity=0.111 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCc
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNC 105 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~ 105 (245)
+.....++++|+++ |++..|||..++.. ..+.+-..+.+.||++++.
T Consensus 281 ~~i~~~v~~~L~~~-gl~~~di~~~v~Hq-----gg~~il~~v~~~Lgl~~~~ 327 (401)
T PLN03170 281 KNIERSLEEAFKPL-GITDYNSIFWVAHP-----GGPAILDQVEAKVGLEKER 327 (401)
T ss_pred HHHHHHHHHHHHhc-CCCccccCeEEecC-----CcHHHHHHHHHHcCCChHH
Confidence 33444667788886 99999999876432 2345566789999997554
No 241
>PRK07801 acetyl-CoA acetyltransferase; Provisional
Probab=55.56 E-value=45 Score=30.22 Aligned_cols=42 Identities=10% Similarity=0.063 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
...|+++|++++ |+.++|||.+-+.- .+....-...+.||+.
T Consensus 282 ~~~a~~~a~~~a-gi~~~did~~e~~d-----~Fa~~~~~~~e~lG~~ 323 (382)
T PRK07801 282 PIPATRYALEKT-GLSIDDIDVVEINE-----AFAPVVLAWLKETGAD 323 (382)
T ss_pred hHHHHHHHHHHc-CCCHHHcCEeeecc-----cchHHHHHHHHHhCCC
Confidence 357999999997 99999999884321 2223344556778874
No 242
>PRK08170 acetyl-CoA acetyltransferase; Provisional
Probab=55.15 E-value=40 Score=31.09 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407 55 AINAAAPLIDNLSNIDKNSIELIITC 80 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~~dId~li~~ 80 (245)
...|+++|++++ |++++|||++-+.
T Consensus 309 ~~~a~~~al~~a-Gl~~~did~~ei~ 333 (426)
T PRK08170 309 PVHAATPLLQRH-GLTLEDLDLWEIN 333 (426)
T ss_pred HHHHHHHHHHHc-CCCHHHcCEEEec
Confidence 568999999997 9999999988653
No 243
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=54.93 E-value=18 Score=32.42 Aligned_cols=84 Identities=11% Similarity=0.086 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcH--HHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhc
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSM--STYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILS 130 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~--a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~s 130 (245)
+-.....++||+++ |++.+|||+|-+ |..| -..+++ ....++.|-+.-+.|.+-|++ |-|=+.+- .+..
T Consensus 52 e~i~~li~~al~eA-~~~~~dID~IA~-T~gP-GL~gaL~VG~~~Ak~LA~a~~kPli~VnH-~~gHi~a~-----~l~~ 122 (342)
T COG0533 52 ENIPPLIEEALAEA-GVSLEDIDAIAV-TAGP-GLGGALLVGATAAKALALALNKPLIPVNH-LEGHIEAA-----RLET 122 (342)
T ss_pred HHHHHHHHHHHHHc-CCCcccCCEEEE-ecCC-CchhHHHHHHHHHHHHHHHhCCCEeecch-HHHHHHHH-----Hhcc
Confidence 34456688999997 999999998876 4444 233322 223334443323445666654 44433332 3333
Q ss_pred C-CCCCCeEEEEEeccc
Q psy2407 131 K-VSPGAKALVIATDIS 146 (245)
Q Consensus 131 g-~~~~~~aLVv~~e~~ 146 (245)
+ .+ --.+|+|++-..
T Consensus 123 ~~~~-p~v~LlVSGGHT 138 (342)
T COG0533 123 GLAF-PPVALLVSGGHT 138 (342)
T ss_pred CCCC-CcEEEEEecCce
Confidence 3 32 134566666544
No 244
>PRK09268 acetyl-CoA acetyltransferase; Provisional
Probab=54.64 E-value=66 Score=29.77 Aligned_cols=28 Identities=7% Similarity=0.055 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEEec
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITCSE 82 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~t~ 82 (245)
....|+++|++++ |++++|||++-+.-.
T Consensus 310 ~~~~a~~~a~~~A-Gl~~~Did~~Ei~d~ 337 (427)
T PRK09268 310 APAYAVPRLLARN-GLTLQDFDFYEIHEA 337 (427)
T ss_pred cHHHHHHHHHHHc-CCCHHHCCEEEeccc
Confidence 4557999999997 999999999876544
No 245
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=54.41 E-value=31 Score=30.56 Aligned_cols=27 Identities=7% Similarity=0.138 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEEe
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITCS 81 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~t 81 (245)
......+++|+++ |++++|||.|.+..
T Consensus 48 ~l~~~i~~~l~~~-~~~~~did~Iavt~ 74 (322)
T TIGR03722 48 VAPKLIKEALEEA-GVSLEDIDAVAFSQ 74 (322)
T ss_pred HHHHHHHHHHHHc-CCCHHHCCEEEEec
Confidence 3445589999997 99999999998754
No 246
>PLN02854 3-ketoacyl-CoA synthase
Probab=54.19 E-value=79 Score=30.18 Aligned_cols=42 Identities=10% Similarity=0.096 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCCCc------CCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 55 AINAAAPLIDNLSNIDK------NSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~------~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
+...+++.|.+. |+.+ .+||+++... ....+-..+++.||++
T Consensus 387 ~~~~i~~~L~~~-gl~~~~pd~~~didhf~iHq-----ggr~IId~v~k~LgL~ 434 (521)
T PLN02854 387 FVTLVRRKLLKA-KVKPYIPDFKLAFEHFCIHA-----GGRAVLDELQKNLQLS 434 (521)
T ss_pred HHHHHHHHHHHc-CCCccCCcccccCcEEEECC-----CCHHHHHHHHHHcCCC
Confidence 566778888886 9887 6899877532 2335566889999996
No 247
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=53.89 E-value=20 Score=27.05 Aligned_cols=56 Identities=14% Similarity=0.059 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHH----HHhcCCCCcCCcCEEEEEeccCCCC--CCcHHHHHHHHc-CCCCCcceeeec
Q psy2407 50 DPVSFAINAAAPL----IDNLSNIDKNSIELIITCSESGIDF--GKSMSTYIHHYL-GLNRNCRLFELK 111 (245)
Q Consensus 50 ~~~~la~~Aa~~a----L~~a~g~~~~dId~li~~t~~~~~~--~p~~a~~l~~~L-Gl~~~~~~~dv~ 111 (245)
+..+-..+|.+++ +++. +++++||-.+++ |.|+|-. +|. ..++.+ |+ ..+|.+..+
T Consensus 13 n~~e~I~~at~eLl~~i~~~N-~l~~~dIvSi~F-T~T~DL~a~fPA---~a~R~~~g~-~~Vpl~c~~ 75 (118)
T PF07736_consen 13 NTPEEILEATRELLEEILERN-ELSPEDIVSIIF-TVTPDLDAAFPA---AAARELPGW-DDVPLMCAQ 75 (118)
T ss_dssp SSHHHHHHHHHHHHHHHHHHT-T--GGGEEEEEE-EE-TT--SS-TC---HHHHHTTTG-TTSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHc-CCCHHHEEEEEE-EeCCCcCccChH---HHHHccCCC-CccceeccC
Confidence 3344444555544 4565 999999988887 5566543 454 334555 88 478877664
No 248
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=53.66 E-value=14 Score=32.48 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCcCEEEEEec
Q psy2407 51 PVSFAINAAAPLIDNLSNIDKNSIELIITCSE 82 (245)
Q Consensus 51 ~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~ 82 (245)
-.+......+++|+++ |++++|||.|.++..
T Consensus 48 H~~~l~~~i~~~l~~~-~~~~~did~iav~~G 78 (305)
T TIGR00329 48 HAENIPPLLERALIES-NVDKSEIDLIAYTQG 78 (305)
T ss_pred HHHHHHHHHHHHHHHc-CCCHHHCCEEEEecC
Confidence 3556677789999996 999999999887543
No 249
>PLN03173 chalcone synthase; Provisional
Probab=52.46 E-value=72 Score=29.14 Aligned_cols=46 Identities=13% Similarity=0.054 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCc
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNC 105 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~ 105 (245)
.....++++|++. |++..|||.+++. ...+.+-..+++.||++++.
T Consensus 278 ~~~~~i~~~L~~~-gl~~~di~~~v~H-----qgg~~Il~~v~~~LgL~~ek 323 (391)
T PLN03173 278 NVEKSLTEAFKPL-GISDWNSLFWIAH-----PGGPAILDQVEAKLALKPEK 323 (391)
T ss_pred HHHHHHHHHHHhc-CCCccccCeEEEC-----CCcHHHHHHHHHHcCCChHH
Confidence 3444566778886 9999999997643 22346667889999997654
No 250
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=52.05 E-value=41 Score=25.34 Aligned_cols=60 Identities=18% Similarity=0.112 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHH----HHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeec
Q psy2407 49 EDPVSFAINAAAPL----IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK 111 (245)
Q Consensus 49 e~~~~la~~Aa~~a----L~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~ 111 (245)
++..+-..+|.+++ +++. +++++||-.+++ |.|+|-.. ...+.+++.+|.-.++|.++.+
T Consensus 12 ~nt~e~I~~at~eLl~~i~~~N-~l~~edivSv~F-T~T~DL~a-~FPA~aaR~~~~~~~Vplmc~q 75 (117)
T cd02185 12 ENTAEEILEATRELLEEIIERN-NIKPEDIISVIF-TVTPDLDA-AFPAKAARELGGWKYVPLMCAQ 75 (117)
T ss_pred CCCHHHHHHHHHHHHHHHHHHc-CCCHHHEEEEEE-EeCCcccc-cChHHHHHhcCCCCCcceeecC
Confidence 33344444555544 4565 999999988887 45564332 1223556666432577877764
No 251
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=50.52 E-value=8.1 Score=33.35 Aligned_cols=30 Identities=13% Similarity=0.083 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCcCEEEEEec
Q psy2407 52 VSFAINAAAPLIDNLSNIDKNSIELIITCSE 82 (245)
Q Consensus 52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~t~ 82 (245)
.+......+++|+++ +++++|||.|.++..
T Consensus 30 ~~~L~~~i~~~l~~~-~~~~~did~iavt~G 59 (268)
T PF00814_consen 30 SENLPPLIEELLKEA-GISLSDIDAIAVTRG 59 (268)
T ss_dssp HHHHHHHHHHHHHHH-TS-GGGESEEEEEEE
T ss_pred HHHHHHHHHHHHHHc-CCCHHHCCEEEEecC
Confidence 456677899999997 999999999987543
No 252
>KOG2708|consensus
Probab=46.98 E-value=22 Score=30.24 Aligned_cols=85 Identities=12% Similarity=0.154 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCC-cHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCC
Q psy2407 54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGK-SMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKV 132 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p-~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~ 132 (245)
-...-.+++|+++ +++.+|||.+.+ |-.|....| +....+++.|-+=-+.|.+.|+ -|-+-+ .+.+..-.+
T Consensus 52 ~il~Lv~~al~ea-~v~~~diD~icy-TKGPGmgaPL~~vaivaRtlsllw~kPlv~VN-HCigHI---EMGR~iTgA-- 123 (336)
T KOG2708|consen 52 WILGLVKQALEEA-GVTSDDIDCICY-TKGPGMGAPLSVVAIVARTLSLLWNKPLVGVN-HCIGHI---EMGREITGA-- 123 (336)
T ss_pred HHHHHHHHHHHHc-CCChhhCCEEEE-cCCCCCCCchhhHHHHHHHHHHHhCCCcccch-hhhhhh---hhcceeccC--
Confidence 3344478899996 999999998876 344444444 3334455555532344544443 465532 332222222
Q ss_pred CCCCeEEEEEecccc
Q psy2407 133 SPGAKALVIATDISR 147 (245)
Q Consensus 133 ~~~~~aLVv~~e~~s 147 (245)
+.-.+|-|++-+..
T Consensus 124 -~nPvvLYvSGGNTQ 137 (336)
T KOG2708|consen 124 -QNPVVLYVSGGNTQ 137 (336)
T ss_pred -CCCEEEEEeCCceE
Confidence 22456666665543
No 253
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=46.17 E-value=22 Score=31.47 Aligned_cols=31 Identities=6% Similarity=0.043 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCcCEEEEEec
Q psy2407 51 PVSFAINAAAPLIDNLSNIDKNSIELIITCSE 82 (245)
Q Consensus 51 ~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~ 82 (245)
-.+.....++++|+++ +++.+|||.|.++..
T Consensus 49 H~~~l~~~i~~~l~~~-~~~~~~id~iav~~G 79 (314)
T TIGR03723 49 HLEAIPPLIEEALAEA-GLTLSDIDAIAVTAG 79 (314)
T ss_pred HHHHHHHHHHHHHHHc-CCCHHHCCEEEEecC
Confidence 4566777889999996 999999999987543
No 254
>TIGR02446 FadI fatty oxidation complex, beta subunit FadI. This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (TIGR02440). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in E. coli.
Probab=46.13 E-value=43 Score=31.00 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCCCcCCcCEEEEEe
Q psy2407 56 INAAAPLIDNLSNIDKNSIELIITCS 81 (245)
Q Consensus 56 ~~Aa~~aL~~a~g~~~~dId~li~~t 81 (245)
..|+++|++++ |++++|||++-+.-
T Consensus 314 ~~a~~~al~~A-gl~~~Did~~Ei~d 338 (430)
T TIGR02446 314 SYATPLALQRA-GLALSDLTLIDMHE 338 (430)
T ss_pred HHHHHHHHHHc-CCCHHHCCEEEecc
Confidence 46899999997 99999999886543
No 255
>PRK08304 stage V sporulation protein AD; Validated
Probab=46.07 E-value=1e+02 Score=27.62 Aligned_cols=89 Identities=16% Similarity=0.186 Sum_probs=47.8
Q ss_pred HHHHHHHHH---HHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC-------CCcceee-----ec-----
Q psy2407 52 VSFAINAAA---PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN-------RNCRLFE-----LK----- 111 (245)
Q Consensus 52 ~~la~~Aa~---~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~-------~~~~~~d-----v~----- 111 (245)
.-||-.|+. +=|++. |.+|+|-|+|+.+--. .....+...+..+-|+. .....|| +.
T Consensus 204 aaMapAa~dti~~h~~d~-~~~~~~yDli~tGDlg--~vG~~i~~~ll~~~g~~~~~~~~DcG~~iy~~~~q~~~aGgSG 280 (337)
T PRK08304 204 AAMAPAAADTIQQHFKDT-GRSPEDYDLIVTGDLG--RVGREILKELLKEEGYDIGDNYNDCGLMIYDSEQQDVFAGGSG 280 (337)
T ss_pred hhhhHHHHHHHHHHHHHc-CCChhhccEEEEcchH--HHHHHHHHHHHHHhCCChhhcccccCeEEeccCCCcccCCCcc
Confidence 345555554 445675 9999999999843211 11123344444443431 1234454 32
Q ss_pred CcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccc
Q psy2407 112 QACYSCTAGLQMAINFILSKVSPGAKALVIATDIS 146 (245)
Q Consensus 112 ~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~ 146 (245)
-||+.-+..=.+ ...++.|.+ +++|+|+.--.
T Consensus 281 c~csa~v~~~~~-~~~~~~g~~--~rvl~v~tGaL 312 (337)
T PRK08304 281 CACSAVVTYGYL-LKELQKGKL--KRVLVVATGAL 312 (337)
T ss_pred cchhHHHHHHHH-HHHHhcCCc--eEEEEEEchhh
Confidence 244443333222 344578978 99999987665
No 256
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=44.92 E-value=25 Score=31.63 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407 52 VSFAINAAAPLIDNLSNIDKNSIELIITC 80 (245)
Q Consensus 52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~ 80 (245)
.+-....++++|+++ |++++|||.|.+.
T Consensus 50 ~~~l~~~i~~~l~~a-~~~~~did~Iavt 77 (345)
T PTZ00340 50 REHILSLVKEALEEA-KITPSDISLICYT 77 (345)
T ss_pred HHHHHHHHHHHHHHc-CCCHHHCCEEEEe
Confidence 345556688999997 9999999988764
No 257
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=42.52 E-value=1.3e+02 Score=29.18 Aligned_cols=48 Identities=8% Similarity=0.113 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
.+=..+.++++|+++ ++++++||.|++...+ ..+|.+...|.+.+|..
T Consensus 292 l~~i~~~i~~~L~~a-~~~~~~id~ViLvGGs--sriP~V~~~l~~~f~~~ 339 (599)
T TIGR01991 292 VQKTLSICRRALRDA-GLSVEEIKGVVLVGGS--TRMPLVRRAVAELFGQE 339 (599)
T ss_pred HHHHHHHHHHHHHHc-CCChhhCCEEEEECCc--CCChHHHHHHHHHhCCC
Confidence 344556678899996 9999999999875433 35789999999999863
No 258
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=42.31 E-value=83 Score=26.53 Aligned_cols=63 Identities=14% Similarity=0.257 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHH
Q psy2407 49 EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFI 128 (245)
Q Consensus 49 e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i 128 (245)
+....+....+++++++ +.-|.|+.++.. +-.++.+|+..+|+| .+| |-..+..++..++
T Consensus 156 ~~~~~~l~~~~~~a~~e------dgAeaIiLGCAG----ms~la~~Lq~~~gvP----VID------gv~Aav~~a~~L~ 215 (230)
T COG4126 156 EEAEALLVIEAAEALKE------DGAEAIILGCAG----MSDLADQLQKAFGVP----VID------GVAAAVKLAEGLL 215 (230)
T ss_pred HHHHHHHHHHHHHHhhh------cCCCEEEEcCcc----HHHHHHHHHHHhCCC----ccc------chHHHHHHHHHHH
Confidence 33445555555555554 346778877553 346789999999963 333 3344556666666
Q ss_pred hcC
Q psy2407 129 LSK 131 (245)
Q Consensus 129 ~sg 131 (245)
..|
T Consensus 216 ~~~ 218 (230)
T COG4126 216 GMG 218 (230)
T ss_pred hhc
Confidence 554
No 259
>KOG2707|consensus
Probab=42.26 E-value=49 Score=29.94 Aligned_cols=44 Identities=9% Similarity=-0.034 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCC-----cHHHHHHHHcCC
Q psy2407 56 INAAAPLIDNLSNIDKNSIELIITCSESGIDFGK-----SMSTYIHHYLGL 101 (245)
Q Consensus 56 ~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p-----~~a~~l~~~LGl 101 (245)
....++||+++ |+.++|+|+|-+ |..|....+ +.|..++..+..
T Consensus 87 ~~~iqral~aa-~~~p~dldaIAV-T~gPGl~lsL~vGl~fA~glA~~l~k 135 (405)
T KOG2707|consen 87 PRLIQRALDAA-GLSPKDLDAIAV-TRGPGLPLSLKVGLSFAKGLAVKLQK 135 (405)
T ss_pred HHHHHHHHHHc-CCCcccceeEEE-ecCCCceeehhhhHHHHHHHHHhccC
Confidence 45688999996 999999998876 444533321 345555555555
No 260
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=41.48 E-value=1.3e+02 Score=29.38 Aligned_cols=47 Identities=6% Similarity=0.159 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
+=..+.++++|+++ ++.+++||.|++...+ ..+|.+...|.+.+|..
T Consensus 309 ~~~~~~i~~~L~~a-~~~~~~i~~ViLvGGs--sriP~v~~~l~~~fg~~ 355 (616)
T PRK05183 309 KRTLLACRRALRDA-GVEADEVKEVVMVGGS--TRVPLVREAVGEFFGRT 355 (616)
T ss_pred HHHHHHHHHHHHHc-CCCcccCCEEEEECCc--ccChHHHHHHHHHhccC
Confidence 34455678899996 9999999999976433 35788899999999863
No 261
>KOG1406|consensus
Probab=39.92 E-value=39 Score=29.39 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCcCEEEEEecc
Q psy2407 51 PVSFAINAAAPLIDNLSNIDKNSIELIITCSES 83 (245)
Q Consensus 51 ~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~ 83 (245)
-.||...|++++.++. |+.|+||+.|-+.-+.
T Consensus 270 gfdm~~~aa~~l~aks-gltpndvqvielhdcf 301 (408)
T KOG1406|consen 270 GFDMTRLAAKRLFAKS-GLTPNDVQVIELHDCF 301 (408)
T ss_pred cchHHHHHHHHHHHHc-CCCcccceEEEeeccc
Confidence 3689999999999995 9999999998766554
No 262
>PRK12342 hypothetical protein; Provisional
Probab=37.73 E-value=90 Score=26.81 Aligned_cols=29 Identities=17% Similarity=0.293 Sum_probs=25.9
Q ss_pred cCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 74 IELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 74 Id~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
.|+|+++..+.+...-.+...++..||++
T Consensus 110 ~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P 138 (254)
T PRK12342 110 FDLLLFGEGSGDLYAQQVGLLLGELLQLP 138 (254)
T ss_pred CCEEEEcCCcccCCCCCHHHHHHHHhCCC
Confidence 89999998888877778899999999995
No 263
>TIGR03285 methan_mark_14 putative methanogenesis marker protein 14. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=36.75 E-value=35 Score=30.96 Aligned_cols=33 Identities=6% Similarity=0.263 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEe
Q psy2407 48 YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCS 81 (245)
Q Consensus 48 ~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t 81 (245)
.|+..+|......++++++ +++.+|+|.|+=.|
T Consensus 62 resV~elV~dtl~e~~k~A-~l~i~DL~FVVRST 94 (445)
T TIGR03285 62 RESVAELVKDTLKESLKKA-GLDIDDLDFVVRST 94 (445)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCChhhccEEEecc
Confidence 4678999999999999997 99999999998654
No 264
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=36.44 E-value=73 Score=28.94 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccC-CCCC-C-----cHHHHHHHHcCCC
Q psy2407 51 PVSFAINAAAPLIDNLSNIDKNSIELIITCSESG-IDFG-K-----SMSTYIHHYLGLN 102 (245)
Q Consensus 51 ~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~-~~~~-p-----~~a~~l~~~LGl~ 102 (245)
.-.+-.+|+++++.++ ++++++||+|=...+|- ..+. | ..+..|++.+|++
T Consensus 69 lg~~~a~av~~~~~~~-~l~~~~id~IgsHGQTv~H~P~~~~TlQiG~~~~iA~~tgi~ 126 (365)
T PRK09585 69 LGRLFAEAVNALLAEA-GLSPEDIDAIGSHGQTVRHRPGEGFTLQIGDGALIAELTGIT 126 (365)
T ss_pred HHHHHHHHHHHHHHHc-CCCccCccEEEeCCcccccCCCCCCeEEcCCHHHHHHHHCcC
Confidence 4567889999999997 99999999987665542 1111 1 3478999999984
No 265
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=36.34 E-value=59 Score=27.95 Aligned_cols=38 Identities=11% Similarity=0.172 Sum_probs=28.8
Q ss_pred CcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee
Q psy2407 73 SIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL 110 (245)
Q Consensus 73 dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv 110 (245)
+.|+|+++..+.+...-.....+++.||++.-..+..+
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~l 149 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSKI 149 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEEE
Confidence 48999999888877777888999999999532334333
No 266
>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A.
Probab=36.28 E-value=93 Score=27.64 Aligned_cols=87 Identities=15% Similarity=0.177 Sum_probs=40.4
Q ss_pred HHHHHHHHH---HHHHhcCCCCcCCcCEEEEEeccCCCC--CCcHHHHHHHHcCCCCC-------ccee-----eec---
Q psy2407 52 VSFAINAAA---PLIDNLSNIDKNSIELIITCSESGIDF--GKSMSTYIHHYLGLNRN-------CRLF-----ELK--- 111 (245)
Q Consensus 52 ~~la~~Aa~---~aL~~a~g~~~~dId~li~~t~~~~~~--~p~~a~~l~~~LGl~~~-------~~~~-----dv~--- 111 (245)
.-||-.|+. +=|++. |.+|+|-|+||. +|.. ...+...+.++-|+.-. ...| |+.
T Consensus 199 aAMAPAA~dTI~~h~~D~-g~~p~dYDlIvT----GDLg~vG~~il~~Ll~~~G~~i~~~~~DCG~~iyd~~~Qdv~aGG 273 (329)
T PF07451_consen 199 AAMAPAAADTIEQHFKDT-GRSPDDYDLIVT----GDLGKVGRKILRDLLKEKGYDISENYNDCGLMIYDPEKQDVHAGG 273 (329)
T ss_dssp HHHHHHHHHHHHHHHHHC-T--GGG-SEEEE----SS-HHHHHHHHHHHHHHTT---GGGEEEHHHCSS-TT-S--TT-E
T ss_pred hhHhHHHHHHHHHHHHHh-CCChhhcCeEEe----cchHHHHHHHHHHHHHHcCCCCccccccCCeEeecCCccccccCC
Confidence 345555544 344575 999999999984 3211 12334444444453210 1122 232
Q ss_pred --CcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccc
Q psy2407 112 --QACYSCTAGLQMAINFILSKVSPGAKALVIATDIS 146 (245)
Q Consensus 112 --~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~ 146 (245)
-||+.-+..=.+ ...++.|.+ +++|+|+.-..
T Consensus 274 SGcgCSA~V~~g~l-l~~l~~g~~--krvL~vaTGAL 307 (329)
T PF07451_consen 274 SGCGCSAVVLCGYL-LPKLRKGEL--KRVLFVATGAL 307 (329)
T ss_dssp ESHHHHHHHHHHCH-HHHHHTTS---SEEEEEEEEE-
T ss_pred CCcchHHHHHHHHH-HHHHHcCCc--eEEEEEEchhh
Confidence 234333332222 344578988 99999987655
No 267
>PLN03172 chalcone synthase family protein; Provisional
Probab=36.04 E-value=1.6e+02 Score=26.87 Aligned_cols=45 Identities=11% Similarity=0.052 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcc
Q psy2407 56 INAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCR 106 (245)
Q Consensus 56 ~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~ 106 (245)
...+++.|++. |++..|||..++. ...+.+-..+++.||++++..
T Consensus 280 ~~~~~~~L~~~-gl~~~di~~~~~H-----qgg~~Il~~v~~~Lgl~~~~~ 324 (393)
T PLN03172 280 EKSLVEAFAPI-GINDWNSIFWIAH-----PGGPAILDQVEIKLDLKEEKL 324 (393)
T ss_pred HHHHHHHhhhc-CCCccccceEEec-----CCcHHHHHHHHHHcCCCHHHH
Confidence 34455677785 9999999986643 223466778899999975533
No 268
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=34.63 E-value=85 Score=36.01 Aligned_cols=77 Identities=14% Similarity=0.056 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCCCCcCCcCEEE-EEeccCCCCCCcHHHHHHHHcCCCC----Cccee----eec-CcchhHHHHHHHH
Q psy2407 55 AINAAAPLIDNLSNIDKNSIELII-TCSESGIDFGKSMSTYIHHYLGLNR----NCRLF----ELK-QACYSCTAGLQMA 124 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~~dId~li-~~t~~~~~~~p~~a~~l~~~LGl~~----~~~~~----dv~-~~C~~~~~aL~~A 124 (245)
-.++.++|++++ |+++++||+|- ++|.|+ ..-|.-...|.+.+|-.. .++.- .++ ..+++|+.+|..+
T Consensus 317 q~~~i~~Al~~A-gi~p~~I~yIeaHGTGT~-~gD~~E~~Al~~vf~~~~~~~~~~~vgSvKs~iGH~~~AAG~a~lik~ 394 (2582)
T TIGR02813 317 QAKALKRAYDDA-GFAPHTCGLIEAHGTGTA-AGDVAEFGGLVSVFSQDNDQKQHIALGSVKSQIGHTKSTAGTAGMIKA 394 (2582)
T ss_pred HHHHHHHHHHHc-CCCHHHCCEEEecCCCCC-CCCHHHHHHHHHHhcccccCCCCceeeccccccccchHhHHHHHHHHH
Confidence 468999999997 99999999986 455554 333444556666665311 12222 233 3677788888777
Q ss_pred HHHHhcCCC
Q psy2407 125 INFILSKVS 133 (245)
Q Consensus 125 ~~~i~sg~~ 133 (245)
...++.|..
T Consensus 395 ~lal~~~~i 403 (2582)
T TIGR02813 395 VLALHHKVL 403 (2582)
T ss_pred HHHHhcCCc
Confidence 777776644
No 269
>PRK13410 molecular chaperone DnaK; Provisional
Probab=33.83 E-value=1.5e+02 Score=29.15 Aligned_cols=47 Identities=4% Similarity=0.100 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCC
Q psy2407 52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL 101 (245)
Q Consensus 52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl 101 (245)
.+-..+.++++|+++ |+++++||.|++...+ ..+|.+...+.+.+|.
T Consensus 308 ~~r~~~~i~~~L~~a-g~~~~dId~VvLVGGs--sRiP~V~~~l~~~fg~ 354 (668)
T PRK13410 308 LDRLLRPVKRALKDA-GLSPEDIDEVVLVGGS--TRMPMVQQLVRTLIPR 354 (668)
T ss_pred HHHHHHHHHHHHHHc-CCChhhCcEEEEECCc--cccHHHHHHHHHHcCC
Confidence 445566678899997 9999999999865433 3578888899998885
No 270
>PRK08439 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=33.58 E-value=1.9e+02 Score=26.31 Aligned_cols=77 Identities=8% Similarity=0.010 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEE-EEeccCCCCCCcHHHHHHHHcCCCCC-cceee----ec-CcchhHHHHHHHHH
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELII-TCSESGIDFGKSMSTYIHHYLGLNRN-CRLFE----LK-QACYSCTAGLQMAI 125 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li-~~t~~~~~~~p~~a~~l~~~LGl~~~-~~~~d----v~-~~C~~~~~aL~~A~ 125 (245)
+-..+|.++||+++ |+ +|||.|- ++|.|+ ..-+.-...|.+.+|-... .+... ++ ...++++..+..+.
T Consensus 274 ~~~~~a~~~al~~a-g~--~~i~~v~~hgtgt~-~~D~~E~~al~~~f~~~~~~~~v~s~K~~~Gh~~~AsG~~~~~~~~ 349 (406)
T PRK08439 274 EGPLRAMKAALEMA-GN--PKIDYINAHGTSTP-YNDKNETAALKELFGSKEKVPPVSSTKGQIGHCLGAAGAIEAVISI 349 (406)
T ss_pred HHHHHHHHHHHHHc-CC--CccCEEEccCCcCC-CCCHHHHHHHHHHhcccCCCCeEECcccccccCchhhhHHHHHHHH
Confidence 45568999999997 98 7999886 445554 2334445556666664211 12211 22 24455555555555
Q ss_pred HHHhcCCC
Q psy2407 126 NFILSKVS 133 (245)
Q Consensus 126 ~~i~sg~~ 133 (245)
..++.|..
T Consensus 350 ~~l~~~~i 357 (406)
T PRK08439 350 MAMRDGIL 357 (406)
T ss_pred HHHhCCee
Confidence 56666643
No 271
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=33.40 E-value=1.6e+02 Score=29.03 Aligned_cols=46 Identities=4% Similarity=0.093 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCC
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL 101 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl 101 (245)
+-....++++|+++ |+++++||.|++...+ ..+|.+-..|.+.+|-
T Consensus 334 ~r~~~~v~~~L~~a-~~~~~dId~VvLVGGs--sriP~V~~~l~~~fg~ 379 (657)
T PTZ00186 334 ERSIAPCKQCMKDA-GVELKEINDVVLVGGM--TRMPKVVEEVKKFFQK 379 (657)
T ss_pred HHHHHHHHHHHHHc-CCChhhCCEEEEECCc--ccChHHHHHHHHHhCC
Confidence 34456678899997 9999999999975433 3588999999999986
No 272
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=33.34 E-value=71 Score=27.59 Aligned_cols=31 Identities=13% Similarity=0.108 Sum_probs=26.1
Q ss_pred CCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 72 NSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 72 ~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
..-|+|+++.++-|...-.+...++..||++
T Consensus 110 ~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P 140 (260)
T COG2086 110 IGPDLVLTGKQAIDGDTGQVGPLLAELLGWP 140 (260)
T ss_pred cCCCEEEEecccccCCccchHHHHHHHhCCc
Confidence 3456888998888877888999999999995
No 273
>KOG1794|consensus
Probab=33.18 E-value=2.2e+02 Score=25.26 Aligned_cols=127 Identities=11% Similarity=0.009 Sum_probs=72.2
Q ss_pred eeecCCCCCHHHHHHHHHHHHHHhcCCCCcCC-cCEEEEEeccCCCCCCcHHHHHHHHcC--CCCCcceeeecCcchhHH
Q psy2407 42 KSVSLPYEDPVSFAINAAAPLIDNLSNIDKNS-IELIITCSESGIDFGKSMSTYIHHYLG--LNRNCRLFELKQACYSCT 118 (245)
Q Consensus 42 r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~d-Id~li~~t~~~~~~~p~~a~~l~~~LG--l~~~~~~~dv~~~C~~~~ 118 (245)
-|+..+.+...+=..++.++|.+++ |++++. +..|.++=+..++ +..-..+-..+- .+..+.-|-|++--.+
T Consensus 36 nh~~ig~~~~~~rie~~i~~A~~k~-g~d~~~~lr~lgL~lSg~d~--e~~~~~lv~~~R~~fps~ae~~~v~sDa~~-- 110 (336)
T KOG1794|consen 36 NHWLIGSTTCASRIEDMIREAKEKA-GWDKKGPLRSLGLGLSGTDQ--EDKNRKLVTEFRDKFPSVAENFYVTSDADG-- 110 (336)
T ss_pred ccccCCchHHHHHHHHHHHHHHhhc-CCCccCccceeeeecccCCc--hhHHHHHHHHHHHhccchhheeeeehhHHH--
Confidence 3444445556667778899999996 999998 8877765332222 222333333332 1112333444332111
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCCC
Q psy2407 119 AGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP 181 (245)
Q Consensus 119 ~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~ 181 (245)
........+ .+..||+-+.+...+.+++++..... .-.....|||..|..+.+..
T Consensus 111 ----sl~a~t~g~--~~GiVLiaGTgs~crl~~~DGs~~~~--ggwg~~iGd~GSaywia~~A 165 (336)
T KOG1794|consen 111 ----SLAAATPGG--EGGIVLIAGTGSNCRLVNPDGSEKGA--GGWGHMIGDGGSAYWIARQA 165 (336)
T ss_pred ----HHhhcCCCC--CCcEEEEecCCceeEEECCCCCccCC--CCCCCccCCCcchhhhhhhh
Confidence 111111222 23789999999988888776632111 10135799999999998764
No 274
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=33.10 E-value=53 Score=30.34 Aligned_cols=66 Identities=14% Similarity=0.080 Sum_probs=35.8
Q ss_pred HHHHHHHHHH----HHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcce---eeecCcchhHHHHH
Q psy2407 51 PVSFAINAAA----PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL---FELKQACYSCTAGL 121 (245)
Q Consensus 51 ~~~la~~Aa~----~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~---~dv~~~C~~~~~aL 121 (245)
...+|..|++ -+|+++ |++++|||.|+++...+.+.-+. =+..+||=|..+. .-++|+...|...+
T Consensus 302 ~~qlAKaAi~aGi~~Ll~~a-gi~~~di~~v~lAG~FG~~l~~~----~a~~iGLlP~~~~~kv~~~GN~al~GA~~~ 374 (412)
T PF14574_consen 302 EFQLAKAAIRAGIEILLEEA-GISPEDIDRVYLAGGFGNYLDPE----SAIRIGLLPDVPAEKVRFVGNAALAGARMA 374 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-T--GGG--EEEEECSS-SEEEHH----HHHHTTSS--S-GGGEEEEC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCCHHHccEEEEeCcccccCCHH----HHhhcCCCCCccccCEEEECcHHHHHHHHH
Confidence 5667777665 455686 99999999999998887655443 3456886444432 33455544444433
No 275
>PLN03184 chloroplast Hsp70; Provisional
Probab=32.72 E-value=1.3e+02 Score=29.68 Aligned_cols=48 Identities=8% Similarity=0.124 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
.+-..+.++++|+++ ++++++||.|++...+ ..+|.+-..|.+.+|..
T Consensus 345 ~~r~~~~i~~~L~~a-~~~~~dId~ViLvGGs--sriP~V~~~i~~~fg~~ 392 (673)
T PLN03184 345 LDRCKTPVENALRDA-KLSFKDIDEVILVGGS--TRIPAVQELVKKLTGKD 392 (673)
T ss_pred HHHHHHHHHHHHHHc-CCChhHccEEEEECCc--cccHHHHHHHHHHhCCC
Confidence 344455678899997 9999999999976433 35889999999999863
No 276
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=32.44 E-value=32 Score=25.30 Aligned_cols=44 Identities=14% Similarity=0.128 Sum_probs=25.8
Q ss_pred CCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhH
Q psy2407 72 NSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSC 117 (245)
Q Consensus 72 ~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~ 117 (245)
..+|.||++|.......|..-..-.+..|+ .+.+++..++|..+
T Consensus 52 p~pe~liiGtG~~~~~~~~~~~~~l~~~GI--~ve~m~T~~Ac~ty 95 (110)
T PF04430_consen 52 PKPEVLIIGTGKRQLFLPPELREYLRKKGI--GVEVMDTPAACRTY 95 (110)
T ss_dssp CS-SEEEEEETTS-SECTHHHHHHHHTTT---EEEEE-HHHHHHHH
T ss_pred CCCcEEEEccCCccccCCHHHHHHHHHcCC--eEEEECHHHHHHHH
Confidence 358999999865533333333333456676 46778888899774
No 277
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=31.47 E-value=2.4e+02 Score=25.26 Aligned_cols=89 Identities=18% Similarity=0.205 Sum_probs=46.1
Q ss_pred HHHHHHHHH---HHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC-------CCcceeee-------c--C
Q psy2407 52 VSFAINAAA---PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN-------RNCRLFEL-------K--Q 112 (245)
Q Consensus 52 ~~la~~Aa~---~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~-------~~~~~~dv-------~--~ 112 (245)
.-||-.|+. +=|++. |.+|+|-|+|+.+--. .....+...+..+=|+. .....||- . -
T Consensus 198 aamapaa~dti~~h~~d~-~~~~~~yd~i~tgdlg--~vg~~i~~~ll~~~g~~~~~~~~dcg~~iy~~~~~~~aggsgc 274 (327)
T TIGR02845 198 AAMAPAAADTIEAHFKDT-GRSVDDYDLIVTGDLA--RVGSEILRKLLKERGYDVTERYDDCGVMIYRPDQQVFAGGSGC 274 (327)
T ss_pred hhhhHHHHHHHHHHHHHc-CCChhhccEEEecchH--HHHHHHHHHHHHHcCCChhhccccCCeEEEcCCCcccCCCccc
Confidence 345555554 445675 9999999999843211 11123333343333321 11223322 1 2
Q ss_pred cchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccc
Q psy2407 113 ACYSCTAGLQMAINFILSKVSPGAKALVIATDIS 146 (245)
Q Consensus 113 ~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~ 146 (245)
||+.-+..=++ ...++.|.+ +++|+|+.--.
T Consensus 275 ~csa~v~~~~~-~~~~~~g~~--~r~l~v~tgal 305 (327)
T TIGR02845 275 ACSAVVTYGHI-LKEMLRGKL--KKVLVVATGAL 305 (327)
T ss_pred chhHHHHHHHH-HHHHhcCcc--eEEEEEEchhh
Confidence 44443333222 344567877 99999987665
No 278
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=31.16 E-value=1.2e+02 Score=22.91 Aligned_cols=61 Identities=7% Similarity=0.095 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhH
Q psy2407 50 DPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSC 117 (245)
Q Consensus 50 ~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~ 117 (245)
+..+|..+...+.|+.+ .+|..|+++|.....+.|..-.......|+. +.+++.+.+|-.+
T Consensus 51 ~~~~Lt~e~f~~vl~~a-----~~~EilliGTG~~~rf~p~~l~aal~~~gIs--ve~Mst~AA~RTY 111 (127)
T COG3737 51 TLSDLTPEDFERVLAEA-----PDVEILLIGTGARLRFPPPKLRAALKAAGIS--VEPMSTGAAVRTY 111 (127)
T ss_pred ChhhCCHHHHHHHHhcC-----CCceEEEEecCccccCCCHHHHHHHHHcCCc--cccccchhhHHHH
Confidence 46778888888888875 4799999998776555555444445556663 4455566666554
No 279
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=30.89 E-value=3.5e+02 Score=23.27 Aligned_cols=91 Identities=10% Similarity=0.064 Sum_probs=57.4
Q ss_pred hccceeeeecC-CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcc
Q psy2407 36 NLLMQQKSVSL-PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQAC 114 (245)
Q Consensus 36 ~~Gi~~r~~~~-~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C 114 (245)
|-+|..|-+.. ....+ +-+.++..+.++++ +.|++|+.|-.+.-+.|.-|+.+...-|+ |++-|+.+-
T Consensus 29 RedI~vrv~gsGaKm~p-e~~~~~~~~~~~~~------~pDf~i~isPN~a~PGP~~ARE~l~~~~i----P~IvI~D~p 97 (277)
T PRK00994 29 REDIDVRVVGSGAKMGP-EEVEEVVKKMLEEW------KPDFVIVISPNPAAPGPKKAREILKAAGI----PCIVIGDAP 97 (277)
T ss_pred ccCceEEEeccCCCCCH-HHHHHHHHHHHHhh------CCCEEEEECCCCCCCCchHHHHHHHhcCC----CEEEEcCCC
Confidence 56777775532 23333 34446677777776 58899998887777788888888888777 456666544
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCeEEEEEeccc
Q psy2407 115 YSCTAGLQMAINFILSKVSPGAKALVIATDIS 146 (245)
Q Consensus 115 ~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~ 146 (245)
.- .. ...++...+ .+++ +-+|.+
T Consensus 98 ~~-----K~-~d~l~~~g~--GYIi-vk~DpM 120 (277)
T PRK00994 98 GK-----KV-KDAMEEQGL--GYII-VKADPM 120 (277)
T ss_pred cc-----ch-HHHHHhcCC--cEEE-EecCcc
Confidence 32 22 255554434 5654 456665
No 280
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=30.52 E-value=83 Score=23.47 Aligned_cols=62 Identities=8% Similarity=0.019 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhH
Q psy2407 49 EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSC 117 (245)
Q Consensus 49 e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~ 117 (245)
.+..++..+....++.-. .++|.|+++|.......|.-.....+..|+ ...+++..++|..+
T Consensus 35 ~~~~~l~~~~l~~l~~~~-----~~peiliiGtG~~~~~~~~~~~~~l~~~gi--~vevm~T~~Acrty 96 (114)
T cd05125 35 SSFEDITEESLSLFELLE-----PRPEILVIGTGRKSRPLSPELRKYFKKLGI--AVEVVDTRNACATF 96 (114)
T ss_pred CChhhCCHHHHHHHHhcc-----CCCCEEEEccCCCCCcCCHHHHHHHHHcCC--EEEEECHHHHHHHH
Confidence 344555555555444321 268999999876533344333344556777 46778888899774
No 281
>PRK03673 hypothetical protein; Provisional
Probab=30.27 E-value=4.3e+02 Score=24.27 Aligned_cols=85 Identities=7% Similarity=-0.072 Sum_probs=42.7
Q ss_pred CceeEEeEEeEecC-Ccee-cHHHHHHHcCCChHHHhhccceeeeec-CCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEE
Q psy2407 1 MIKVGIEAINLYGG-SVFI-DVIELAKYRKLDTVRFENLLMQQKSVS-LPYEDPVSFAINAAAPLIDNLSNIDKNSIELI 77 (245)
Q Consensus 1 m~~~~I~~i~~~lP-~~~v-~~~~~~~~~~~~~~~~~~~Gi~~r~~~-~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~l 77 (245)
||++.|.++|.-|= ...+ +|..+.. ..+...|+.-++.. .+| +. +-..++.++++++ .|+|
T Consensus 1 ~~~v~Iis~GdEll~G~i~dtN~~~la------~~L~~~G~~v~~~~~v~D-~~-~~i~~~l~~a~~~--------~DlV 64 (396)
T PRK03673 1 MLRVEMLSTGDEVLHGQIVDTNAAWLA------DFFFHQGLPLSRRNTVGD-NL-DALVAILRERSQH--------ADVL 64 (396)
T ss_pred CCEEEEEEecccCCCCeEEEhHHHHHH------HHHHHCCCEEEEEEEcCC-CH-HHHHHHHHHHhcc--------CCEE
Confidence 89999999998762 2222 2222221 12234676543332 222 22 2233444444333 4777
Q ss_pred EEEeccCCCCCCcHHHHHHHHcCC
Q psy2407 78 ITCSESGIDFGKSMSTYIHHYLGL 101 (245)
Q Consensus 78 i~~t~~~~~~~p~~a~~l~~~LGl 101 (245)
|+....++...--+...+++.+|.
T Consensus 65 I~tGGlGpt~dD~t~~avA~a~g~ 88 (396)
T PRK03673 65 IVNGGLGPTSDDLSALAAATAAGE 88 (396)
T ss_pred EEcCCCCCCCcccHHHHHHHHcCC
Confidence 765444333333445667777776
No 282
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=28.51 E-value=94 Score=24.94 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEecc
Q psy2407 49 EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSES 83 (245)
Q Consensus 49 e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~ 83 (245)
.+...=..+|.++++++. ++++++|+.+.++|+.
T Consensus 33 ~d~~~gi~~al~~l~~~~-~~~~~~i~~v~~gTT~ 66 (176)
T PF05378_consen 33 DDPAEGILEALDALLEES-GIDPSDIDRVRHGTTV 66 (176)
T ss_pred cCHHHHHHHHHHhhhccc-CCChhhCcEEEeccHH
Confidence 555666677788888885 9999999999998764
No 283
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=28.42 E-value=90 Score=27.49 Aligned_cols=57 Identities=7% Similarity=0.029 Sum_probs=39.3
Q ss_pred cHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc
Q psy2407 90 SMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF 149 (245)
Q Consensus 90 ~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~ 149 (245)
.+|.-+.+...|+..+.++-|+.||+||..||-.|........ ..-=|++-|-+..+
T Consensus 176 AIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~---s~ySVisPEG~AsI 232 (317)
T COG0825 176 AIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLEN---STYSVISPEGCASI 232 (317)
T ss_pred HHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHh---ceeeecChhhhhhh
Confidence 5677778888886455667779999999999999987665321 23345555555443
No 284
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=28.33 E-value=79 Score=23.25 Aligned_cols=58 Identities=12% Similarity=0.110 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhH
Q psy2407 51 PVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSC 117 (245)
Q Consensus 51 ~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~ 117 (245)
..++..+-...+++. +++.||++|-......|.-.....+..|+ .+.+++..++|..+
T Consensus 37 ~~~l~~e~l~~l~~~-------~peiliiGTG~~~~~~~~~~~~~l~~~gi--~vE~m~T~~AcrTy 94 (109)
T cd05560 37 FEDLTAAHFEALLAL-------QPEVILLGTGERQRFPPPALLAPLLARGI--GVEVMDTQAACRTY 94 (109)
T ss_pred cccCCHHHHHHHHhc-------CCCEEEEecCCCCCcCCHHHHHHHHHcCC--eEEEECHHHHHHHH
Confidence 345555555555543 25788888765433333222334455676 46778888899774
No 285
>COG4401 AroH Chorismate mutase [Amino acid transport and metabolism]
Probab=27.71 E-value=1e+02 Score=22.98 Aligned_cols=60 Identities=10% Similarity=0.032 Sum_probs=39.0
Q ss_pred HHHHHHHHHHH----hcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchh
Q psy2407 54 FAINAAAPLID----NLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYS 116 (245)
Q Consensus 54 la~~Aa~~aL~----~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~ 116 (245)
=-.+|.+++|+ +. -.+|+|+--+++ |.|++...-.+|..+-+.-|. .+++.++++.-|.-
T Consensus 19 eI~~at~eLl~~i~~~N-~~~pedv~sv~~-svT~Dl~A~FPAka~R~~~gw-~~Vpv~~~Qem~V~ 82 (125)
T COG4401 19 EILDATKELLEEIEEEN-ITDPEDVVSVIL-SVTEDLDAIFPAKAVRELPGW-EYVPVMCMQEMPVP 82 (125)
T ss_pred HHHHHHHHHHHHHHHhc-CCChhheeeEEE-EeccchhhhCcHHHhccCCCC-cccceeeeeeccCC
Confidence 33445555554 54 778999887776 456654433336666667788 68999999876643
No 286
>PRK12404 stage V sporulation protein AD; Provisional
Probab=27.52 E-value=3.1e+02 Score=24.64 Aligned_cols=89 Identities=18% Similarity=0.226 Sum_probs=46.6
Q ss_pred HHHHHHHHH---HHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCC--------Ccceeee-------c--
Q psy2407 52 VSFAINAAA---PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNR--------NCRLFEL-------K-- 111 (245)
Q Consensus 52 ~~la~~Aa~---~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~--------~~~~~dv-------~-- 111 (245)
.-||-.|+. +=|++. |.+|+|-|+|+.+--. .....+...+..+=|+.- ....||- .
T Consensus 202 aaMAPAA~dti~~h~~d~-~~~~~~yDlI~TGDLg--~vG~~i~~~ll~~~g~~~~~~~~~DCG~~iyd~~~~~~aGgSG 278 (334)
T PRK12404 202 GAMAPAAVDTIEAHLRDR-QIDASYYDLIVTGDLG--HVGREIAKDLLHKHGVKVPEEQFQDCGLLIYREGQPVIAGASG 278 (334)
T ss_pred hhhhHHHHHHHHHHHHHh-CCChhhccEEEEcchH--HHHHHHHHHHHHHcCCCCCcccccccCeEEecCCCcccCCCcc
Confidence 345555544 445675 9999999999843211 111233444444434321 1223432 1
Q ss_pred CcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccc
Q psy2407 112 QACYSCTAGLQMAINFILSKVSPGAKALVIATDIS 146 (245)
Q Consensus 112 ~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~ 146 (245)
-||+.-+..=. ....++.|.+ +++|+|+.--.
T Consensus 279 cgcsA~v~~g~-~~~~~~~g~~--~rvL~v~TGAL 310 (334)
T PRK12404 279 PGCSATVTYGH-LLNRMKRGEL--KRILVVATGAL 310 (334)
T ss_pred cchHHHHHHHH-HHHHHhcCCc--eEEEEEEchhh
Confidence 23443333222 2444577978 99999987665
No 287
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=27.48 E-value=56 Score=30.99 Aligned_cols=25 Identities=8% Similarity=0.205 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407 55 AINAAAPLIDNLSNIDKNSIELIITC 80 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~~dId~li~~ 80 (245)
....++++|+++ |++++|||.|.++
T Consensus 52 l~~~i~~~l~~~-~~~~~~id~iav~ 76 (535)
T PRK09605 52 IPKVIKEALEEA-GLKPEDIDLVAFS 76 (535)
T ss_pred HHHHHHHHHHHc-CCCHhhCCEEEEC
Confidence 347789999997 9999999988764
No 288
>PF09887 DUF2114: Uncharacterized protein conserved in archaea (DUF2114); InterPro: IPR008303 There are currently no experimental data for members of this group or their homologues. The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=27.44 E-value=70 Score=29.18 Aligned_cols=33 Identities=6% Similarity=0.196 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCcC-CcCEEEEEe
Q psy2407 48 YEDPVSFAINAAAPLIDNLSNIDKN-SIELIITCS 81 (245)
Q Consensus 48 ~e~~~~la~~Aa~~aL~~a~g~~~~-dId~li~~t 81 (245)
.|+..+|......++++++ +++.+ |+|.|+=.|
T Consensus 64 rEsV~elVrdtl~e~~k~A-~l~i~~DL~FVVRST 97 (448)
T PF09887_consen 64 RESVAELVRDTLLESHKKA-HLDIKKDLDFVVRST 97 (448)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCccccceEEEeec
Confidence 4788999999999999997 99988 999998654
No 289
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=26.49 E-value=69 Score=23.54 Aligned_cols=59 Identities=15% Similarity=0.243 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhH
Q psy2407 51 PVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSC 117 (245)
Q Consensus 51 ~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~ 117 (245)
..++..+.....+.. + .+|.|+++|.-.....|.-........|+ .+.+++..++|..+
T Consensus 36 ~~~l~~~~l~~~~~~----~--~peiliiGTG~~~~~~~~~~~~~l~~~gI--~vE~m~T~aAcrTy 94 (109)
T cd00248 36 LSDLDPEALLPLLAE----D--RPDILLIGTGAEIAFLPRALRAALRAAGI--GVEVMSTGAACRTY 94 (109)
T ss_pred cccCCHHHHHHHHhh----C--CCCEEEEcCCCCCCcCCHHHHHHHHHcCC--eEEEeCcHHHHHHH
Confidence 344554444444432 1 37889998765443333222334455777 46778888899774
No 290
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=25.44 E-value=2.9e+02 Score=24.04 Aligned_cols=20 Identities=15% Similarity=0.292 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhcCCCCcCCc
Q psy2407 54 FAINAAAPLIDNLSNIDKNSI 74 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dI 74 (245)
....+.+++|.+. +++++|.
T Consensus 27 ~il~~l~~al~~l-~~~p~d~ 46 (286)
T PRK11867 27 SILAALQRALAEL-GLDPENV 46 (286)
T ss_pred HHHHHHHHHHHHh-CCCCCcE
Confidence 3778899999996 9998875
No 291
>CHL00094 dnaK heat shock protein 70
Probab=25.08 E-value=1.4e+02 Score=29.07 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCC
Q psy2407 52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL 101 (245)
Q Consensus 52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl 101 (245)
.+-....++++|+++ ++++++||.|++...+ ..+|.+...+.+.+|.
T Consensus 308 ~~~~~~~i~~~L~~a-~~~~~~i~~ViLvGGs--sriP~v~~~l~~~fg~ 354 (621)
T CHL00094 308 INRCRIPVENALKDA-KLDKSDIDEVVLVGGS--TRIPAIQELVKKLLGK 354 (621)
T ss_pred HHHHHHHHHHHHHHc-CCChhhCcEEEEECCc--cCChHHHHHHHHHhCC
Confidence 334455678899996 9999999999975443 3588999999999986
No 292
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=24.45 E-value=1.9e+02 Score=28.41 Aligned_cols=44 Identities=11% Similarity=0.258 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCC
Q psy2407 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL 101 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl 101 (245)
..+.++++|+++ ++++++||.|++...+ ..+|.+-..|.+.+|-
T Consensus 315 ~~~~i~~~L~~a-~~~~~~i~~ViLvGGs--sriP~v~~~i~~~f~~ 358 (653)
T PTZ00009 315 TLQPVEKVLKDA-GMDKRSVHEVVLVGGS--TRIPKVQSLIKDFFNG 358 (653)
T ss_pred HHHHHHHHHHHc-CCCHHHCcEEEEECCC--CCChhHHHHHHHHhCC
Confidence 345678899996 9999999999875433 3578888999999874
No 293
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=24.40 E-value=3.7e+02 Score=23.50 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhcCCCCcCCc
Q psy2407 54 FAINAAAPLIDNLSNIDKNSI 74 (245)
Q Consensus 54 la~~Aa~~aL~~a~g~~~~dI 74 (245)
....|..+||++. +++++|.
T Consensus 11 ~i~~~~~~a~~~l-~~~p~d~ 30 (287)
T TIGR02177 11 GILSALQRALAEL-NLDPEQV 30 (287)
T ss_pred HHHHHHHHHHHHh-cCCCCCE
Confidence 4567888999996 9888864
No 294
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=24.20 E-value=2.1e+02 Score=27.89 Aligned_cols=47 Identities=11% Similarity=0.234 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
+-..+.++++|+++ ++.+.+||.|++...+ ..+|.+...|.+.+|..
T Consensus 307 ~~~~~~i~~~l~~a-~~~~~~id~ViLvGGs--sriP~v~~~l~~~fg~~ 353 (627)
T PRK00290 307 ERTIEPCKQALKDA-GLSVSDIDEVILVGGS--TRMPAVQELVKEFFGKE 353 (627)
T ss_pred HHHHHHHHHHHHHc-CCChhhCcEEEEECCc--CCChHHHHHHHHHhCCC
Confidence 34555678899996 9999999999975443 35889999999998863
No 295
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=24.10 E-value=2.2e+02 Score=27.59 Aligned_cols=69 Identities=12% Similarity=0.143 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407 52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN 126 (245)
Q Consensus 52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~ 126 (245)
.+=..+..+++|.++ ++++.+|+.|+....+ ..+|.....+.+.+|- -+--.++..++-..-|...|..
T Consensus 289 l~r~~~~~~~al~~a-~l~~~~I~~VilvGGs--triP~V~~~v~~~f~~---~~~~~inpdeava~GAa~qa~~ 357 (579)
T COG0443 289 LERTIEPVEQALKDA-GLEKSDIDLVILVGGS--TRIPAVQELVKEFFGK---EPEKSINPDEAVALGAAIQAAV 357 (579)
T ss_pred HHHHHHHHHHHHHHc-CCChhhCceEEEccce--eccHHHHHHHHHHhCc---cccccCCccHHHHHHHHHHHHh
Confidence 334455667899997 9999999999965433 3578899999999992 2334566655555555544443
No 296
>PRK13411 molecular chaperone DnaK; Provisional
Probab=23.30 E-value=2.2e+02 Score=27.93 Aligned_cols=46 Identities=13% Similarity=0.217 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCC
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL 101 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl 101 (245)
+-..+.++++|+++ ++.+++||.|++...+ ..+|.+-..|.+.+|-
T Consensus 308 ~~~~~~i~~~L~~a-~~~~~~id~ViLvGGs--sriP~v~~~l~~~f~~ 353 (653)
T PRK13411 308 EATIEPMQQALKDA-GLKPEDIDRVILVGGS--TRIPAVQEAIQKFFGG 353 (653)
T ss_pred HHHHHHHHHHHHHc-CCCHHHCcEEEEECCC--CCcchHHHHHHHHcCC
Confidence 34556778999997 9999999999875433 3578999999999874
No 297
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=23.06 E-value=1.2e+02 Score=29.93 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCC
Q psy2407 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL 101 (245)
Q Consensus 55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl 101 (245)
..+.++++|+++ |+++++||.|++...+ ..+|.+...|.+.+|.
T Consensus 350 ~~~~i~~~L~~a-~~~~~~i~~ViLvGGs--sriP~v~~~l~~~f~~ 393 (663)
T PTZ00400 350 TIEPCEKCIKDA-GVKKDELNDVILVGGM--TRMPKVSETVKKIFGK 393 (663)
T ss_pred HHHHHHHHHHHc-CCCHHHCcEEEEECCc--cCChHHHHHHHHHhCC
Confidence 455678899997 9999999999975433 3578899999999985
No 298
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=22.79 E-value=1.2e+02 Score=29.18 Aligned_cols=46 Identities=9% Similarity=0.187 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCC
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL 101 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl 101 (245)
+-..+.++++|+++ ++.+++||.|++...+ ..+|.+-..|.+.+|.
T Consensus 305 ~~~~~~i~~~l~~a-~~~~~~i~~V~LvGGs--sriP~v~~~i~~~f~~ 350 (595)
T TIGR02350 305 ERTKEPVRQALKDA-GLSASDIDEVILVGGS--TRIPAVQELVKDFFGK 350 (595)
T ss_pred HHHHHHHHHHHHHc-CCCHhHCcEEEEECCc--ccChHHHHHHHHHhCC
Confidence 44455678899996 9999999999976443 3588989999999984
No 299
>PRK00768 nadE NAD synthetase; Reviewed
Probab=21.63 E-value=5.3e+02 Score=22.30 Aligned_cols=74 Identities=16% Similarity=0.197 Sum_probs=43.2
Q ss_pred CcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHH-------------------HHHHHhcCCCCCCeEEEEEecccccc
Q psy2407 89 KSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQM-------------------AINFILSKVSPGAKALVIATDISRFF 149 (245)
Q Consensus 89 p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~-------------------A~~~i~sg~~~~~~aLVv~~e~~s~~ 149 (245)
...+..+++.||+. ....+++.....++...+.. ..-+.-+.. ...||++..+.|..
T Consensus 89 ~~da~~la~~lgi~-~~~~i~I~~~~~~~~~~l~~~~~~~~~~a~~NiqARlRm~~Ly~~An~---~~~lvlgT~N~sE~ 164 (268)
T PRK00768 89 EDDAQDALAFIQPD-RVLTVNIKPAVDASVAALEAAGIELSDFVKGNIKARERMIAQYAIAGA---TGGLVVGTDHAAEA 164 (268)
T ss_pred HHHHHHHHHhcCCC-eeEEEECHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHcc---CCCEEEcCCcccHH
Confidence 35678899999983 35667776655555544421 111222332 45688887777654
Q ss_pred ccCcccccccccccccccccceeEEEEe
Q psy2407 150 VTEDKNELTMEWAFFEPSGGAGAVAMLI 177 (245)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~GDGAaA~ll 177 (245)
. -+ + .+.+|||++.+..
T Consensus 165 ~--~G------y---~TkyGD~~~d~~p 181 (268)
T PRK00768 165 V--TG------F---FTKFGDGGADILP 181 (268)
T ss_pred H--hC------c---eeccCCccccchh
Confidence 2 11 1 2458999987543
No 300
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=20.96 E-value=1.7e+02 Score=26.62 Aligned_cols=51 Identities=14% Similarity=0.129 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCcCEEEEEecc----CCCCCC-----cHHHHHHHHcCCC
Q psy2407 51 PVSFAINAAAPLIDNLSNIDKNSIELIITCSES----GIDFGK-----SMSTYIHHYLGLN 102 (245)
Q Consensus 51 ~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~----~~~~~p-----~~a~~l~~~LGl~ 102 (245)
.-++-.+|+++.|++. ++++++||+|=...+| |....+ .....|+++.|++
T Consensus 66 lg~~~a~av~~~l~~~-~i~~~~I~~IgsHGQTv~H~P~~~~~~TlQiG~~~~iA~~tgi~ 125 (364)
T PF03702_consen 66 LGELFADAVNQFLKKN-GISPSDIDLIGSHGQTVFHRPEGQHPFTLQIGDPAVIAERTGIT 125 (364)
T ss_dssp HHHHHHHHHHHHHHHC-T--GGGEEEEEE--EEEEEECCCTTTEEEEES-HHHHHHHHSS-
T ss_pred HHHHHHHHHHHHHHHc-CCCcccccEEEeCCcceecCcCCCCCceEecCCHHHHHHHHCcC
Confidence 4467789999999996 9999999999765544 321111 4588999999984
No 301
>KOG1391|consensus
Probab=20.73 E-value=1.1e+02 Score=26.60 Aligned_cols=41 Identities=12% Similarity=0.196 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407 56 INAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN 102 (245)
Q Consensus 56 ~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~ 102 (245)
+.|++.+|... |+..+|||++-+.-.. .|. .-.+++.|+++
T Consensus 296 vPAI~~vLKks-Glkl~DiDl~EvNEAF----ApQ-~LAv~r~L~ld 336 (396)
T KOG1391|consen 296 VPAISGVLKKS-GLKLKDIDLVEVNEAF----APQ-YLAVERSLDLD 336 (396)
T ss_pred cHHHHHHHHHc-CCcccccceEEechhh----chH-HHHHHHhhCCC
Confidence 46889999995 9999999988764332 221 23456777773
No 302
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=20.12 E-value=82 Score=23.95 Aligned_cols=34 Identities=15% Similarity=0.338 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCC
Q psy2407 53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDF 87 (245)
Q Consensus 53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~ 87 (245)
.==++.++++|++. |++++.|+.+.++..-.+.+
T Consensus 77 ~rR~~~lke~l~el-gie~eRv~~~wiSa~E~ekf 110 (132)
T COG1908 77 KRRMELLKELLKEL-GIEPERVRVLWISAAEGEKF 110 (132)
T ss_pred HHHHHHHHHHHHHh-CCCcceEEEEEEehhhHHHH
Confidence 33456688999997 99999999998766544433
Done!