RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2407
(245 letters)
>gnl|CDD|225959 COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid
metabolism].
Length = 377
Score = 194 bits (494), Expect = 3e-60
Identities = 69/238 (28%), Positives = 106/238 (44%), Gaps = 16/238 (6%)
Query: 3 KVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAAAP 61
+GI I Y I + ELA+ +D + + L +KSV ED V+ A+ AA
Sbjct: 2 MIGIVGIGAYIPRYRIKLEELARAWGVDPEKIKKGLGVEEKSVPPWDEDAVTMAVEAARN 61
Query: 62 LIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGL 121
+ ++ID + I +I SESG D K +T + LGLN + R +++ ACY+ TA L
Sbjct: 62 ALKR-ADIDPSKIGAVIVGSESGPDAVKPTATIVAEALGLNPSARAADVEFACYAGTAAL 120
Query: 122 QMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP 181
Q AI ++ S + LVI D +++ + E + GAGAVA LI P
Sbjct: 121 QAAIGWVES--GMISYGLVIGADTAQY-----APGDAL-----EYTAGAGAVAFLIGKNP 168
Query: 182 EIFQFDIGSNGYYSFEVMDTCRPIPDSE-AGNADLSLLSYLDCCAQSFKEYKKRVQYK 238
I + G Y+ + D RP + S +Y + K Y ++
Sbjct: 169 PI-VAEFEGTGSYTTDTPDFWRPDGQPYPYVDGRFSEPAYFKHVENAAKGYMEKTGLS 225
>gnl|CDD|238423 cd00827, init_cond_enzymes, "initiating" condensing enzymes are a
subclass of decarboxylating condensing enzymes,
including beta-ketoacyl [ACP] synthase, type III and
polyketide synthases, type III, which include chalcone
synthase and related enzymes. They are characterized by
the utlization of CoA substrate primers, as well as the
nature of their active site residues.
Length = 324
Score = 173 bits (440), Expect = 7e-53
Identities = 81/223 (36%), Positives = 112/223 (50%), Gaps = 21/223 (9%)
Query: 3 KVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAAPL 62
VGIEAI Y +D ELA+ +D ++ + Q+ ++ ED + A+ AA
Sbjct: 1 DVGIEAIGAYLPRYRVDNEELAEGLGVDPGKY-TTGIGQRHMAGDDEDVPTMAVEAARRA 59
Query: 63 IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQ 122
++ + ID + I L+I +ES ID GKS +TY+ LGL N F+LKQACY TA LQ
Sbjct: 60 LER-AGIDPDDIGLLIVATESPIDKGKSAATYLAELLGLT-NAEAFDLKQACYGGTAALQ 117
Query: 123 MAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPE 182
+A N + S P ALV+A+DI+ + L E + EP+ G GA AML+S P
Sbjct: 118 LAANLVES--GPWRYALVVASDIASY--------LLDEGSALEPTLGDGAAAMLVSRNPG 167
Query: 183 IFQFDI-----GSNGYYSF---EVMDTCRPIPDSEAGNADLSL 217
I I S+ Y F VMD P P A L+
Sbjct: 168 ILAAGIVSTHSTSDPGYDFSPYPVMDGGYPKPCKLAYAIRLTA 210
>gnl|CDD|213655 TIGR01835, HMG-CoA-S_prok, 3-hydroxy-3-methylglutaryl CoA synthase,
prokaryotic clade. This clade of
hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found
in a limited spectrum of mostly gram-positive bacteria
which make isopentenyl pyrophosphate (IPP) via the
mevalonate pathway. This pathway is found primarily in
eukaryotes and archaea, but the bacterial homologs are
distinct, having aparrently diverged after being
laterally transferred from an early eukaryote. HMG-CoA
synthase is the first step in the pathway and joins
acetyl-CoA with acetoacetyl-CoA with the release of one
molecule of CoA. The Borellia sequence may have resulted
from a separate lateral transfer event.
Length = 379
Score = 156 bits (395), Expect = 1e-45
Identities = 85/235 (36%), Positives = 130/235 (55%), Gaps = 18/235 (7%)
Query: 4 VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQK-SVSLPYEDPVSFAINAAAPL 62
+GI+ I+ + ++D+ LA+ R +D +F + Q+K +V ED V+ A +AA P+
Sbjct: 1 IGIDKISFFTPQNYLDMTALAEARGVDPEKFHIGIGQKKMAVPPIDEDIVTMAASAAKPI 60
Query: 63 IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQ 122
+D DK I+++I +ESGID K+ + Y+H LGL CR FELKQACY TA LQ
Sbjct: 61 LDR---NDKQKIDMVIFGTESGIDQSKAAAVYVHGLLGLQPFCRSFELKQACYGATAALQ 117
Query: 123 MAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPE 182
MA + +SP K LVIA+DI+++ E EP+ GAGAVAML+S P+
Sbjct: 118 MAKGHV--ALSPDRKVLVIASDIAKY-----GLESPG-----EPTQGAGAVAMLVSADPK 165
Query: 183 IFQFDIGSNGYYSFEVMDTCRPIPDSEAG-NADLSLLSYLDCCAQSFKEYKKRVQ 236
+ + + Y+ ++MD RP + A + S YL+ ++ +Y KR
Sbjct: 166 LLAINE-DSVLYTDDIMDFWRPNYSTTALVDGQYSNEQYLNAFENAWNDYAKRTG 219
>gnl|CDD|233591 TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutaryl-CoA-synthase,
eukaryotic clade. Hydroxymethylglutaryl(HMG)-CoA
synthase is the first step of isopentenyl pyrophosphate
(IPP) biosynthesis via the mevalonate pathway. This
pathway is found mainly in eukaryotes, but also in
archaea and some bacteria. This model is specific for
eukaryotes.
Length = 457
Score = 77.9 bits (192), Expect = 1e-16
Identities = 75/241 (31%), Positives = 111/241 (46%), Gaps = 20/241 (8%)
Query: 4 VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQK-SVSLPYEDPVSFAINAAAPL 62
VGI A+ +Y S ++D EL KY + ++ L Q K ED S + + L
Sbjct: 5 VGILALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTVVSKL 64
Query: 63 IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLG--LNRNCRLFELKQACYSCTAG 120
++ NID + I + +E+ ID KS+ T + N + + ACY TA
Sbjct: 65 MER-YNIDYDQIGRLEVGTETIIDKSKSVKTVLMQLFEESGNTDVEGIDTTNACYGGTAA 123
Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLI-SD 179
L AIN+I S G ALV+A DI+ + K P+GGAGAVAMLI +
Sbjct: 124 LFNAINWIESSSWDGRYALVVAGDIAVY----AKGNA-------RPTGGAGAVAMLIGPN 172
Query: 180 KPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKRVQY 237
P + F+ G G + D +P SE D LS+ YL + +K Y K+++
Sbjct: 173 APIV--FERGLRGSHMQHAYDFYKPDLASEYPVVDGKLSIQCYLSALDRCYKSYCKKIEK 230
Query: 238 K 238
+
Sbjct: 231 Q 231
>gnl|CDD|223409 COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein].
Length = 323
Score = 68.0 bits (167), Expect = 2e-13
Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 14/147 (9%)
Query: 49 EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
E A+ AA +++ + I + I+LII + + S + + LGL F
Sbjct: 50 ETTSDLAVEAARKALED-AGISPDDIDLIIVATSTPDHLFPSTACLVQARLGLGG-APAF 107
Query: 109 ELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSG 168
+L+ AC L +A I S LV+ + + D + F
Sbjct: 108 DLQAACSGFLYALSVADGLIRS--GGYKNVLVVGAETLSRIL--DWTDRDTCVLF----- 158
Query: 169 GAGAVAMLIS---DKPEIFQFDIGSNG 192
G GA A+++ D I D+GS+G
Sbjct: 159 GDGAGAVVLEATEDDNGILDTDLGSDG 185
>gnl|CDD|110176 pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-coenzyme A
synthase N terminal.
Length = 171
Score = 65.7 bits (160), Expect = 2e-13
Identities = 56/177 (31%), Positives = 84/177 (47%), Gaps = 15/177 (8%)
Query: 4 VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQK-SVSLPYEDPVSFAINAAAPL 62
VGI A+ +Y S ++D EL KY + ++ L Q K ED S + L
Sbjct: 2 VGIVALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTVVQKL 61
Query: 63 IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL--FELKQACYSCTAG 120
++ +N+D + I + +E+ ID KS+ T + + N + + ACY TA
Sbjct: 62 MER-NNLDYDCIGRLEVGTETIIDKSKSVKTVLMQLFEESGNTDIEGIDTTNACYGGTAA 120
Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLI 177
L A+N+I S G ALV+A DI+ + + P+GGAGAVAMLI
Sbjct: 121 LFNALNWIESSSWDGRYALVVAGDIA-IYAKGNA----------RPTGGAGAVAMLI 166
>gnl|CDD|178189 PLN02577, PLN02577, hydroxymethylglutaryl-CoA synthase.
Length = 459
Score = 63.2 bits (154), Expect = 1e-11
Identities = 56/206 (27%), Positives = 83/206 (40%), Gaps = 45/206 (21%)
Query: 49 EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
ED +S ++ L++ NID I + SE+ ID KS+ T++ LF
Sbjct: 51 EDVISMSLTVVKSLLEKY-NIDPKQIGRLEVGSETVIDKSKSIKTFLMQ---------LF 100
Query: 109 E-----------LKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNEL 157
E ACY TA L +N++ S G LV+A D +
Sbjct: 101 EESGNTDIEGVDSTNACYGGTAALLNCVNWVESSSWDGRYGLVVAADSA----------- 149
Query: 158 TMEWAFFE----PSGGAGAVAMLIS-DKPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGN 212
+ E P+GGAGAVAML+ + P F+ G + V D +P SE
Sbjct: 150 ----VYAEGPARPTGGAGAVAMLVGPNAP--IVFESKYRGSHMAHVYDFYKPDLASEYPV 203
Query: 213 AD--LSLLSYLDCCAQSFKEYKKRVQ 236
D LS YL +K + ++ +
Sbjct: 204 VDGKLSQTCYLMALDSCYKRFCEKYE 229
>gnl|CDD|238426 cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III
(KASIII) initiates the elongation in type II fatty acid
synthase systems. It is found in bacteria and plants.
Elongation of fatty acids in the type II systems occurs
by Claisen condensation of malonyl-acyl carrier protein
(ACP) with acyl-ACP. KASIII initiates this process by
specifically using acetyl-CoA over acyl-CoA.
Length = 320
Score = 61.0 bits (149), Expect = 5e-11
Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 22/156 (14%)
Query: 44 VSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNR 103
++ P E A+ AA +++ + ID + I+LII + + + + + LG +
Sbjct: 43 IADPGETTSDLAVEAAKKALED-AGIDADDIDLIIVATSTPDYLFPATACLVQARLGA-K 100
Query: 104 NCRLFELKQACYSCTAGLQMAINFILSKVSPGA--KALVIATDI-SRFFVTEDKNELTME 160
N F++ AC GL A I S G LV+ + SR + + T
Sbjct: 101 NAAAFDINAACSGFLYGLSTAAGLIRS----GGAKNVLVVGAETLSRI--LDWTDRST-- 152
Query: 161 WAF-FEPSGGAGAVAMLIS---DKPEIFQFDIGSNG 192
A F G GA A+++ + P I +GS+G
Sbjct: 153 -AVLF----GDGAGAVVLEATEEDPGILDSVLGSDG 183
>gnl|CDD|235266 PRK04262, PRK04262, hypothetical protein; Provisional.
Length = 347
Score = 56.5 bits (137), Expect = 2e-09
Identities = 46/173 (26%), Positives = 71/173 (41%), Gaps = 22/173 (12%)
Query: 35 ENLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTY 94
L +++KSV P ED + A+ AA + + ID I + SES K +T
Sbjct: 35 RGLGVEEKSVPGPDEDTATIAVEAARNALKR-AGIDPKEIGAVYVGSESHPYAVKPTATI 93
Query: 95 IHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDK 154
+ LG + +L+ AC + TA LQ A+ + S + AL I D ++
Sbjct: 94 VAEALGATPDLTAADLEFACKAGTAALQAAMGLVKSGM--IKYALAIGADTAQ---GAPG 148
Query: 155 NELTMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPD 207
+ L E + AG A +I + I + YS+ DT PD
Sbjct: 149 DAL-------EYTAAAGGAAFIIGKEEVIAEI----EATYSY-TTDT----PD 185
>gnl|CDD|171793 PRK12880, PRK12880, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 353
Score = 56.1 bits (135), Expect = 3e-09
Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 16/146 (10%)
Query: 52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK 111
+AA L+ L NIDKNS++ +I ++S F S + Y+H L L+ F+L
Sbjct: 61 SDLGKHAANTLLQGL-NIDKNSLDALIVVTQSPDFFMPSTACYLHQLLNLSSKTIAFDLG 119
Query: 112 QACYSCTAGLQMAINFILSKVSPGAKALVIATD-ISRFFVTEDKNELTMEWAFFEPSGGA 170
QAC GL +A + I S + K L+I D +S+F ++ N P G
Sbjct: 120 QACAGYLYGLFVAHSLIQSGL---GKILLICGDTLSKFIHPKNMN--------LAPIFGD 168
Query: 171 GAVAMLI--SDKPEIFQFDIGSNGYY 194
G A LI +D E F F++GS+G Y
Sbjct: 169 GVSATLIEKTDFNEAF-FELGSDGKY 193
>gnl|CDD|181732 PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 338
Score = 48.7 bits (117), Expect = 8e-07
Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 17/136 (12%)
Query: 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQAC 114
AI A + + ID + I L+I S + + +HH LGL ++C F++ AC
Sbjct: 65 AIAAGRKALAE-AGIDPSDIGLLINTSVCRDYLEPATACRVHHNLGLPKSCANFDVSNAC 123
Query: 115 YSCTAGLQMAINFILSKVSPGA--KALVI----ATDISRFFVTEDKNELTMEWAFFEPS- 167
G+ A N I G ALV+ A +I + T F S
Sbjct: 124 LGFLNGMLDAANMIEL----GQIDYALVVSGESAREIVEATIDRLLAPETTR-EDFAQSF 178
Query: 168 ----GGAGAVAMLISD 179
G+GA A +++
Sbjct: 179 ATLTLGSGAAAAVLTR 194
>gnl|CDD|129831 TIGR00748, HMG_CoA_syn_Arc, hydroxymethylglutaryl-CoA synthase,
putative. This family of archaeal proteins shows
considerable homology and identical active site residues
to the bacterial hydroxymethylglutaryl-CoA synthase
(HMG-CoA synthase, modeled by TIGR01835) which is the
second step in the mevalonate pathway of IPP
biosynthesis. An enzyme from Pseudomonas fluorescens
involved in the biosynthesis of the polyketide
diacetyl-phloroglucinol is more closely related, but
lacks the active site residues. In each of the genomes
containing a member of this family there is no other
recognized HMG-CoA synthase, although other elements of
the mevalonate pathway are in evidence. The only
archaeon currently sequenced which lacks a homolog in
this pathway is Halobacterium, which _does_ contain a
separate HMG-CoA synthase. Thus, although there is no
experimental evidence supporting this name, the
bioinformatics-based conclusion appears to be sound
[Fatty acid and phospholipid metabolism, Biosynthesis].
Length = 345
Score = 48.0 bits (114), Expect = 1e-06
Identities = 51/199 (25%), Positives = 79/199 (39%), Gaps = 19/199 (9%)
Query: 4 VGIEAINLYGGSVFIDVIELAKYRKLDTVRFEN-LLMQQKSVSLPYEDPVSFAINAAAPL 62
GI Y I V E+A+ D N L +++K+V ED + + AA
Sbjct: 2 AGIVGYGAYIPMYRIKVEEIARVWGKDPESISNGLPVEEKAVPGLDEDTATIGVEAARNA 61
Query: 63 IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQ 122
+ + ID I + SES K +T + +G + +L+ AC + TAG+Q
Sbjct: 62 LKR-AKIDPKDIGAVYVGSESHPYAVKPTATIVAEAIGATPDLTAADLEFACKAGTAGIQ 120
Query: 123 MAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPE 182
+ + S + L I D ++ D E T GAG A +I +K
Sbjct: 121 ACMGLVASGMI--KYGLAIGADTAQ-GAPGDALEYT---------AGAGGAAYIIGEKNT 168
Query: 183 IFQFDIGSNGYYSFEVMDT 201
+ F G YS+ DT
Sbjct: 169 VAYF----EGTYSY-TTDT 182
>gnl|CDD|236475 PRK09352, PRK09352, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 319
Score = 47.4 bits (114), Expect = 2e-06
Identities = 45/157 (28%), Positives = 62/157 (39%), Gaps = 29/157 (18%)
Query: 49 EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
E A AA ++ + ID I+LII + + S + + LG N F
Sbjct: 50 ETTSDLATEAAKKALEA-AGIDPEDIDLIIVATTTPDYAFPSTACLVQARLGAK-NAAAF 107
Query: 109 ELKQACYSCTAGLQMAINFILSKVSPGA--KALVIATDI-SRFFVTEDKNELTMEWA--- 162
+L AC L A FI S GA LVI + SR ++W
Sbjct: 108 DLSAACSGFVYALSTADQFIRS----GAYKNVLVIGAEKLSRI----------VDWTDRS 153
Query: 163 ---FFEPSG-GAGAVAMLISDKPEIFQFDIGSNGYYS 195
F G GAGAV + S++P I +GS+G Y
Sbjct: 154 TCVLF---GDGAGAVVLGASEEPGILSTHLGSDGSYG 187
>gnl|CDD|237245 PRK12879, PRK12879, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 325
Score = 43.3 bits (103), Expect = 4e-05
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 16/142 (11%)
Query: 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQAC 114
AI AA + + +D I+LII + + S ++ + LG+ N F++ AC
Sbjct: 57 AIKAAERALAR-AGLDAEDIDLIIVATTTPDYLFPSTASQVQARLGI-PNAAAFDINAAC 114
Query: 115 YSCTAGLQMAINFILSKVSPGAKALVIATD-ISRFFVTEDKNELTMEWAFFEPSGGAGAV 173
GL+ A I S + K LVI + +S+ D+ F G GA
Sbjct: 115 AGFLYGLETANGLITSGLY--KKVLVIGAERLSKVTDYTDRTTCI----LF----GDGAG 164
Query: 174 AMLIS---DKPEIFQFDIGSNG 192
A+++ ++P + +G++G
Sbjct: 165 AVVLEATENEPGFIDYVLGTDG 186
>gnl|CDD|203976 pfam08545, ACP_syn_III, 3-Oxoacyl-[acyl-carrier-protein (ACP)]
synthase III. This domain is found on
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
EC:2.3.1.180, the enzyme responsible for initiating the
chain of reactions of the fatty acid synthase in plants
and bacteria.
Length = 80
Score = 39.4 bits (93), Expect = 1e-04
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 19/92 (20%)
Query: 108 FELKQACYSCTAGLQMAINFILSKVSPGA--KALVIATDI-SRFFVTEDKNELTMEWAFF 164
F++ AC L A I S G LV+ + SR D++ T F
Sbjct: 1 FDINAACSGFVYALSTAAALIRS----GRAKNVLVVGAETLSRILDWTDRS--TA-VLF- 52
Query: 165 EPSGGAGAVAMLIS----DKPEIFQFDIGSNG 192
G GA A+++ I +GS+G
Sbjct: 53 ----GDGAGAVVLEATEEGGARILSSVLGSDG 80
>gnl|CDD|235872 PRK06840, PRK06840, hypothetical protein; Validated.
Length = 339
Score = 41.5 bits (98), Expect = 2e-04
Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 6/131 (4%)
Query: 3 KVGIEAINLYGGSVFIDVIELAKYRKL--DTVRFENLLMQQKSVSLPYEDPVSFAINAAA 60
VGI +Y + E+A+ + + V E + +K V P + AI AA
Sbjct: 4 NVGIVGTGVYLPKDVMTAEEIAEKTGIPEEVVI-EKFGIYEKPVPGPEDHTSDMAIAAAK 62
Query: 61 PLIDNLSNIDKNSIELIITCSESGIDFGK-SMSTYIHHYLGLNRNCRLFELKQACYSCTA 119
P + + +D +I+++I D+ S + I H +G +N F++ C S
Sbjct: 63 PALKQ-AGVDPAAIDVVIYIGSEHKDYPVWSSAPKIQHEIGA-KNAWAFDIMAVCASFPI 120
Query: 120 GLQMAINFILS 130
L++A + + S
Sbjct: 121 ALKVAKDLLYS 131
>gnl|CDD|238427 cd00831, CHS_like, Chalcone and stilbene synthases; plant-specific
polyketide synthases (PKS) and related enzymes, also
called type III PKSs. PKS generate an array of different
products, dependent on the nature of the starter
molecule. They share a common chemical strategy, after
the starter molecule is loaded onto the active site
cysteine, a carboxylative condensation reation extends
the polyketide chain. Plant-specific PKS are dimeric
iterative PKSs, using coenzyme A esters to deliver
substrate to the active site, but they differ in the
choice of starter molecule and the number of
condensation reactions.
Length = 361
Score = 39.5 bits (93), Expect = 0.001
Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 20/161 (12%)
Query: 54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQ- 112
A AA +D + + I+ ++ + +G S+ + + LGL + + + L
Sbjct: 88 LAEEAARGALDEAG-LRPSDIDHLVVNTSTGNPT-PSLDAMLINRLGLRPDVKRYNLGGM 145
Query: 113 ACYSCTAGLQMAINFILSKVSPGAKALVIATD-ISRFFVTEDK--NELTMEWAFFEPSGG 169
C + L +A + L + +PGA+ LV++T+ S ++ D + A F G
Sbjct: 146 GCSAGAIALDLAKD--LLEANPGARVLVVSTELCSLWYRGPDHRSMLVGN--ALF----G 197
Query: 170 AGAVAMLISDKPEIFQFDIGSNGYYSFEVMDT-CRPIPDSE 209
GA A+L+S+ P FE++ +PDSE
Sbjct: 198 DGAAAVLLSNDP-----RDRRRERPLFELVRAASTLLPDSE 233
>gnl|CDD|217374 pfam03116, NQR2_RnfD_RnfE, NQR2, RnfD, RnfE family. This family of
bacterial proteins includes a sodium-translocating
NADH-ubiquinone oxidoreductase (i.e. a respiration
linked sodium pump). In Vibrio cholerae, it negatively
regulates the expression of virulence factors through
inhibiting (by an unknown mechanism) the transcription
of the transcriptional activator ToxT. The family also
includes proteins involved in nitrogen fixation, RnfD
and RnfE. The similarity of these proteins to
NADH-ubiquinone oxidoreductases was previously noted.
Length = 319
Score = 28.6 bits (65), Expect = 2.8
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 3/20 (15%)
Query: 48 YEDPVSFAI---NAAAPLID 64
Y + V+FAI N APLID
Sbjct: 289 YPEGVAFAILLMNLFAPLID 308
>gnl|CDD|218114 pfam04501, Baculo_VP39, Baculovirus major capsid protein VP39.
This family constitutes the 39 kDa major capsid protein
of the Baculoviridae.
Length = 300
Score = 28.1 bits (63), Expect = 3.8
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 128 ILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISD--KPEIFQ 185
IL+ +P + + SR F D+N+ + F + LI+ PE
Sbjct: 158 ILAITNPDRYCSRVINNSSRSFGVTDENDDVGDRVFNAMP---PFIKNLINKLVAPETLT 214
Query: 186 FDIGSNGYYSFEVMDTCR 203
D N TC
Sbjct: 215 ID---NETLRLRNCATCI 229
>gnl|CDD|236037 PRK07515, PRK07515, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 372
Score = 28.3 bits (64), Expect = 4.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 108 FELKQACYSCTAGLQMAINFILS 130
F++ AC S T G+Q A N I S
Sbjct: 149 FDMNVACSSATFGIQTAANAIRS 171
>gnl|CDD|236265 PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 406
Score = 28.2 bits (63), Expect = 4.4
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 39 MQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESG 84
M+ D F +++A+ I L NI+KNS I C E G
Sbjct: 84 MKDAGFLPEELDAERFGVSSASG-IGGLPNIEKNS----IICFEKG 124
>gnl|CDD|235506 PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional.
Length = 247
Score = 26.7 bits (60), Expect = 9.3
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 132 VSPGAKALVIATDISRFFVTEDKNELTMEWA---FFEPSGGAGAVAMLISDK 180
V+PGA I T++ F EDK L E +P A V L SD
Sbjct: 183 VAPGA----IDTEMWSSFSEEDKEGLAEEIPLGRLGKPEEIAKVVLFLASDD 230
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.399
Gapped
Lambda K H
0.267 0.0822 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,417,879
Number of extensions: 1158651
Number of successful extensions: 946
Number of sequences better than 10.0: 1
Number of HSP's gapped: 916
Number of HSP's successfully gapped: 30
Length of query: 245
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 151
Effective length of database: 6,768,326
Effective search space: 1022017226
Effective search space used: 1022017226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (25.9 bits)