RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2407
(245 letters)
>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS,
coenzyme A, thiolase fold, condensing enzyme; HET: HMG
CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2
c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A*
Length = 396
Score = 203 bits (518), Expect = 7e-64
Identities = 77/240 (32%), Positives = 125/240 (52%), Gaps = 18/240 (7%)
Query: 2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRF-ENLLMQQKSVSLPYEDPVSFAINAAA 60
+ +GI+ IN Y ++D+ +LA+ R++D +F + + +VS +D VS NAA
Sbjct: 1 MAIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAK 60
Query: 61 PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
+I + DK I ++I +ES +D K+ + IH+ LG+ R FE+K+ACY+ T
Sbjct: 61 DIITD---EDKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEMKEACYAATPA 117
Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
+Q+A +++ + P K LVIATD +R+ + EP+ GAGAVAM+I+
Sbjct: 118 IQLAKDYLAT--RPNEKVLVIATDTARY---------GLNSG-GEPTQGAGAVAMVIAHN 165
Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDSEA-GNADLSLLSYLDCCAQSFKEYKKRVQYKI 239
P I + + Y +V D RP + LS +Y+ QS+ EY KR +
Sbjct: 166 PSILALNEDAVAYTE-DVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKRQGKSL 224
>3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase,
nitrosylation, transfera inhibitor complex; HET: BTB;
1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A
1ysl_B* 1ysl_A* 2hdb_A*
Length = 388
Score = 184 bits (467), Expect = 2e-56
Identities = 76/241 (31%), Positives = 124/241 (51%), Gaps = 18/241 (7%)
Query: 1 MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAA 59
+ +GI+ I+ + +ID+ LA+ R +D +F + Q Q +V+ +D V+FA NAA
Sbjct: 5 SMTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAA 64
Query: 60 APLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTA 119
++ DK +I+++I +ES ID K+ + +H +G+ R FE+K+A Y TA
Sbjct: 65 EAILTK---EDKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKEAXYGATA 121
Query: 120 GLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISD 179
GLQ+A N + P K LV+A DI+++ + EP+ GAGAVAML+S
Sbjct: 122 GLQLAKNHVAL--HPDKKVLVVAADIAKYGLNS----------GGEPTQGAGAVAMLVSS 169
Query: 180 KPEIFQFDIGSNGYYSFEVMDTCRPIPDSEA-GNADLSLLSYLDCCAQSFKEYKKRVQYK 238
+P I + + ++ D RP + LS +Y+ AQ + E+KKR
Sbjct: 170 EPRILALKEDN-VMLTQDIYDFWRPTGHPYPMVDGPLSNETYIQSFAQVWDEHKKRTGLD 228
Query: 239 I 239
Sbjct: 229 F 229
>3sqz_A Putative hydroxymethylglutaryl-COA synthase; thiolase fold, HMG_COA
synthase, transferase; HET: COA; 1.20A {Streptococcus
mutans} PDB: 3leh_A
Length = 425
Score = 183 bits (466), Expect = 6e-56
Identities = 65/241 (26%), Positives = 113/241 (46%), Gaps = 18/241 (7%)
Query: 1 MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAA 59
+++GI+ I +++ +LA+ R D +F L+ S++ +D V+ A +A
Sbjct: 34 SMRIGIDKIGFTSSQYVLNMKDLAEARGEDPQKFSKGLLLNALSIAPITDDVVTLAAGSA 93
Query: 60 APLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTA 119
++ DK I+++I +ES +D K+ + Y+H LG+ R FE+K+A YS TA
Sbjct: 94 NEILTA---EDKEKIDMVILATESSVDQSKAGAVYVHSLLGIQPFARSFEMKEAAYSATA 150
Query: 120 GLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISD 179
L A + P + LV+A+DI+++ E + GAG++AML+
Sbjct: 151 ALNYAKLHVEK--HPDTRVLVLASDIAKY----------GIGTPGESTQGAGSIAMLVKK 198
Query: 180 KPEIFQFDIGSNGYYSFEVMDTCRPIPDSEA-GNADLSLLSYLDCCAQSFKEYKKRVQYK 238
P I + ++MD RP + N S YLD ++ EY+KR
Sbjct: 199 DPRILILH-DETLAQTRDIMDFWRPNYTTTPYVNGMYSTKQYLDMLKTTWAEYQKRFDVS 257
Query: 239 I 239
+
Sbjct: 258 L 258
>2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic;
hydromethylglutaryl COA, mevalonate pathway, structural
GENO structural genomics consortium, SGC; HET: COA;
2.00A {Homo sapiens}
Length = 478
Score = 181 bits (460), Expect = 1e-54
Identities = 67/241 (27%), Positives = 105/241 (43%), Gaps = 18/241 (7%)
Query: 1 MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQK-SVSLPYEDPVSFAINAA 59
+ VGI A+ +Y S ++D EL KY +D ++ L Q K ED S +
Sbjct: 22 SMDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVV 81
Query: 60 APLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL--NRNCRLFELKQACYSC 117
L++ +N+ + I + +E+ ID KS+ T + N + + ACY
Sbjct: 82 QNLMER-NNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGG 140
Query: 118 TAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLI 177
TA + A+N+I S G ALV+A DI+ + P+GG GAVA+LI
Sbjct: 141 TAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNA-----------RPTGGVGAVALLI 189
Query: 178 SDKPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKRV 235
+ F+ G G + D +P SE D LS+ YL + + Y K++
Sbjct: 190 GPNAPLI-FERGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKI 248
Query: 236 Q 236
Sbjct: 249 H 249
>2v4w_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid
biosynthesis, cholesterol biosynthesis, mitochondrion,
phosphoprotein; HET: HMG; 1.7A {Homo sapiens} PDB:
2wya_A*
Length = 460
Score = 165 bits (418), Expect = 1e-48
Identities = 63/241 (26%), Positives = 105/241 (43%), Gaps = 18/241 (7%)
Query: 1 MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQK-SVSLPYEDPVSFAINAA 59
VGI A+ +Y + ++D +L KY ++ ++ L Q + ED S +
Sbjct: 3 PKDVGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVV 62
Query: 60 APLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL--NRNCRLFELKQACYSC 117
L++ + +S+ + +E+ ID K++ T + N + + ACY
Sbjct: 63 QRLMER-IQLPWDSVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGG 121
Query: 118 TAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLI 177
TA L A N++ S G A+V+ DI+ + P+GGAGAVAMLI
Sbjct: 122 TASLFNAANWMESSSWDGRYAMVVCGDIAVY-----------PSGNARPTGGAGAVAMLI 170
Query: 178 SDKPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKRV 235
K + + G G + V D +P SE D LS+ YL + + Y+K++
Sbjct: 171 GPKAPL-ALERGLRGTHMENVYDFYKPNLASEYPIVDGKLSIQCYLRALDRCYTSYRKKI 229
Query: 236 Q 236
Q
Sbjct: 230 Q 230
>2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB:
2f9a_A* 2fa0_A* 2fa3_A*
Length = 450
Score = 161 bits (408), Expect = 3e-47
Identities = 61/238 (25%), Positives = 94/238 (39%), Gaps = 18/238 (7%)
Query: 4 VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAAAPL 62
VGI A+++Y + L + ++ L Q + ED +S + NA L
Sbjct: 4 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVTSL 63
Query: 63 IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL--NRNCRLFELKQACYSCTAG 120
++ ID I + SE+ ID KS+ T++ N + + ACY TA
Sbjct: 64 LEK-YKIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTAA 122
Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
L +N++ S G LVI TD + + P+GGA A+AMLI
Sbjct: 123 LLNCVNWVESNSWDGRYGLVICTDSAVYAEGPA-----------RPTGGAAAIAMLIGPD 171
Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDSE--AGNADLSLLSYLDCCAQSFKEYKKRVQ 236
I F+ G + V D +P SE + LS YL +K + +
Sbjct: 172 API-VFESKLRGSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFE 228
>1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS,
bacterial, thiolase fold, beta-alpha-beta-alpha fold,
catalytic triad; HET: 15P; 2.22A {Streptomyces
coelicolor} SCOP: c.95.1.2 c.95.1.2
Length = 382
Score = 62.8 bits (153), Expect = 1e-11
Identities = 26/159 (16%), Positives = 58/159 (36%), Gaps = 23/159 (14%)
Query: 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNC-RLFELKQA 113
+D+ + + I++II S +G S++ ++ + +G + ++ +
Sbjct: 88 VPAVIQRALDD-AELLATDIDVIIYVSCTGFMM-PSLTAWLINEMGFDSTTRQIPIAQLG 145
Query: 114 CYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNELTM-EWAFFEPSGGAG 171
C + A + A +F + P A AL++A + S + D ++ F G G
Sbjct: 146 CAAGGAAINRAHDFCTA--YPEANALIVACEFCSLCYQPTDLGVGSLLCNGLF----GDG 199
Query: 172 AVAMLISDKPEIFQFDIGSNGYYSFEVMDT-CRPIPDSE 209
A ++ + + IP +E
Sbjct: 200 IAAAVVRGRGGT-----------GVRLERNGSYLIPKTE 227
>1i88_A CHS2, chalcone synthase 2; polyketide synthase, transferase; 1.45A
{Medicago sativa} SCOP: c.95.1.2 c.95.1.2 PDB: 1i89_A
1i86_A 1i8b_A 1bi5_A 1cml_A* 1d6f_A* 1chw_A* 1cgz_A*
1cgk_A* 1bq6_A* 1jwx_A 1d6i_A 1d6h_A* 1u0v_A 1u0w_A*
1z1e_A* 1z1f_A*
Length = 389
Score = 61.5 bits (149), Expect = 3e-11
Identities = 33/158 (20%), Positives = 64/158 (40%), Gaps = 15/158 (9%)
Query: 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQ-A 113
AA I K+ I +I C+ SG+D + LGL + + + Q
Sbjct: 106 GKEAAVKAIKE-WGQPKSKITHLIVCTTSGVDM-PGADYQLTKLLGLRPYVKRYMMYQQG 163
Query: 114 CYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNELTMEWAFFEPSGGAGA 172
++ L++A + + + GA+ LV+ +++ + F ++ ++ + G GA
Sbjct: 164 AFAGGTVLRLAKDLA--ENNKGARVLVVCSEVTAVTFRGP--SDTHLDSLVGQALFGDGA 219
Query: 173 VAMLISDKPEIFQFDIGSNGYYSFEVMDT-CRPIPDSE 209
A+++ P FE++ T PDSE
Sbjct: 220 AALIVGSDPV------PEIEKPIFEMVWTAQTIAPDSE 251
>1ee0_A 2-pyrone synthase; polyketide synthase, thiolase fold, transferase;
HET: CAA; 2.05A {Gerbera hybrid cultivar} SCOP: c.95.1.2
c.95.1.2 PDB: 1qlv_A
Length = 402
Score = 60.7 bits (147), Expect = 6e-11
Identities = 35/193 (18%), Positives = 74/193 (38%), Gaps = 15/193 (7%)
Query: 20 VIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIIT 79
+ ++ T+ L AA ID + K+ I +I
Sbjct: 76 ALTEDYLQENPTMCEFMAPSLNARQDLVVTGVPMLGKEAAVKAIDE-WGLPKSKITHLIF 134
Query: 80 CSESGIDFGKSMSTYIHHYLGLNRNC-RLFELKQACYSCTAGLQMAINFILSKVSPGAKA 138
C+ +G+D + LGL+ + R +Q + L++A + + + G++
Sbjct: 135 CTTAGVDM-PGADYQLVKLLGLSPSVKRYMLYQQGAAAGGTVLRLAKDLA--ENNKGSRV 191
Query: 139 LVIATDI-SRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFE 197
L++ ++I + F + E ++ + G GA A+++ P + FE
Sbjct: 192 LIVCSEITAILFHGPN--ENHLDSLVAQALFGDGAAALIVGSGPH------LAVERPIFE 243
Query: 198 VMDT-CRPIPDSE 209
++ T +PD+E
Sbjct: 244 IVSTDQTILPDTE 256
>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A
{Curcuma longa} PDB: 3ov3_A
Length = 393
Score = 59.9 bits (145), Expect = 1e-10
Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 15/158 (9%)
Query: 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRN-CRLFELKQA 113
A AA I K+ I ++ CS SGID + LGL RL QA
Sbjct: 106 AKEAAEKAIKE-WGRPKSEITHLVFCSISGIDM-PGADYRLATLLGLPLTVNRLMIYSQA 163
Query: 114 CYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNELTMEWAFFEPSGGAGA 172
C+ A L++A + + + GA+ LV+A +I F + E E + G GA
Sbjct: 164 CHMGAAMLRIAKDLAEN--NRGARVLVVACEITVLSFRGPN--EGDFEALAGQAGFGDGA 219
Query: 173 VAMLISDKPEIFQFDIGSNGYYSFEVMDT-CRPIPDSE 209
A+++ P +E+ + +S+
Sbjct: 220 GAVVVGADPL------EGIEKPIYEIAAAMQETVAESQ 251
>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET:
MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2
PDB: 1tee_A
Length = 393
Score = 59.7 bits (145), Expect = 1e-10
Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 16/158 (10%)
Query: 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQA- 113
A++ + + I L++ + +G + I LGL+ + +
Sbjct: 117 AVDVSKRALAG-LPYRAAEIGLLVLATSTGFIA-PGVDVAIVKELGLSPSISRVVVNFMG 174
Query: 114 CYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNELTMEWAFFEPSGGAGA 172
C + L A N++ + P KALV+ ++ S V D + + F G G
Sbjct: 175 CAAAMNALGTATNYVRA--HPAMKALVVCIELCSVNAVFADDINDVVIHSLF----GDGC 228
Query: 173 VAMLISDKPEIFQFDIGSNGYYSFEVMDT-CRPIPDSE 209
A++I V + + + ++E
Sbjct: 229 AALVIGASQ-----VQEKLEPGKVVVRSSFSQLLDNTE 261
>3awk_A Chalcone synthase-like polyketide synthase; type III polyketide
synthase, transferase; 2.00A {Huperzia serrata} PDB:
3awj_A
Length = 402
Score = 58.0 bits (140), Expect = 4e-10
Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 15/158 (9%)
Query: 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQ-A 113
A AA I K+ I ++ + SG+D + LGL + L Q
Sbjct: 119 AKEAAISAIKQ-WGQPKSKITHLVFATTSGVDMP-GADFQLAKLLGLRPTVKRVMLYQQG 176
Query: 114 CYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNELTMEWAFFEPSGGAGA 172
Y+ L++A + + + GA+ LV +++ + F E ++ G GA
Sbjct: 177 AYAGATVLRVAKDLA--ENNKGARVLVACSEVTAVTFRAPS--ETHLDGLVGSALFGDGA 232
Query: 173 VAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPI-PDSE 209
A+++ P FE+ + PDS+
Sbjct: 233 AALIVGSDPV------PQEEKPLFEIHWAGEAVLPDSD 264
>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase;
2.00A {Oryza sativa} PDB: 3ale_A
Length = 387
Score = 56.8 bits (137), Expect = 1e-09
Identities = 34/187 (18%), Positives = 66/187 (35%), Gaps = 16/187 (8%)
Query: 26 YRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGI 85
+ + + + A AA I I ++ + SG
Sbjct: 71 LSAHPEFVDRDAPSLDARLDIAADAVPELAAEAAKKAIAE-WGRPAADITHLVVTTNSGA 129
Query: 86 DFGKSMSTYIHHYLGLNRNCRLFELKQ-ACYSCTAGLQMAINFILSKVSPGAKALVIATD 144
+ + LGL + R L C++ A L++A + + S GA+ LV+A +
Sbjct: 130 HV-PGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLA--ENSRGARVLVVAAE 186
Query: 145 I-SRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDT-C 202
+ +F D E + G GA A+++ + + + FE++
Sbjct: 187 LTLMYFTGPD--EGCFRTLLVQGLFGDGAAAVIVGADADDVERPL-------FEIVSAAQ 237
Query: 203 RPIPDSE 209
IP+S+
Sbjct: 238 TIIPESD 244
>3v7i_A Putative polyketide synthase; type III polyketide synthase,
acyltransferase, transferase,; 2.90A {Streptomyces
coelicolor}
Length = 413
Score = 56.5 bits (136), Expect = 1e-09
Identities = 26/165 (15%), Positives = 58/165 (35%), Gaps = 21/165 (12%)
Query: 49 EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
E ++ AA + + +D ++ +IT + + + + + L L + L
Sbjct: 135 EAVQAYGERAARGALQI-AGLDVADVDCLITSNSTTPAL-PGLDVALANRLPLRGDTMLL 192
Query: 109 ELKQ-ACYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNELTM-EWAFFE 165
Q AC + T L +A + + + P LV+ ++ S + D ++ F
Sbjct: 193 PATQWACVAGTRSLALAADLVAA--DPDRVVLVVISEALSTTYQPADDTLESLIVRLLF- 249
Query: 166 PSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDT-CRPIPDSE 209
AVA +++ +P + +P +
Sbjct: 250 ---ADTAVAAVVTGRPR---------PESVLRLDAAWHHTLPGTR 282
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.35A {Burkholderia xenovorans}
Length = 354
Score = 56.0 bits (136), Expect = 2e-09
Identities = 26/151 (17%), Positives = 50/151 (33%), Gaps = 30/151 (19%)
Query: 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQAC 114
A L+ +SI+ +I S++ + + + L L +C ++ C
Sbjct: 70 CRKAGEKLLAG-LGWQADSIDALIFVSQTPNYRLPATAFVLQAELDLPASCLALDINLGC 128
Query: 115 YSCTAGLQMAINFILSKVSPGA--KALVIATDI-SRFFVTEDKNELTMEWA-------FF 164
L + +N I + GA + L+ D S+ ++ F
Sbjct: 129 SGYPQALWLGMNLIQT----GAAKRVLLAVGDTISKM----------IDPTDRSTSLLF- 173
Query: 165 EPSG-GAGAVAMLISDKPEIFQFDIGSNGYY 194
G A+ S+ F IG++G
Sbjct: 174 ---GDAGTMTALETSNGDAAAHFIIGADGKG 201
>2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS,
chalcone-S synthase superfamily, type I PKS; HET: P6G;
2.90A {Dictyostelium discoideum}
Length = 374
Score = 56.0 bits (135), Expect = 2e-09
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 18/161 (11%)
Query: 52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK 111
A A + + DK I I++ + +GI ++ + LGLN++ L
Sbjct: 96 PDLAQQACLRALKD-WGGDKGDITHIVSVTSTGIII-PDVNFKLIDLLGLNKDVERVSLN 153
Query: 112 Q-ACYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNELTMEWAFFEPSGG 169
C + + L+ A + K SP + LV+ T++ S F D + + + F
Sbjct: 154 LMGCLAGLSSLRTAASLA--KASPRNRILVVCTEVCSLHFSNTDGGDQMVASSIF----A 207
Query: 170 AGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRP-IPDSE 209
G+ A +I P I + + +EVM + P++E
Sbjct: 208 DGSAAYIIGCNPRIEETPL-------YEVMCSINRSFPNTE 241
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics,
synthetase; 1.60A {Burkholderia pseudomallei} PDB:
3gwe_A
Length = 365
Score = 54.1 bits (131), Expect = 9e-09
Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 18/154 (11%)
Query: 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCR 106
P E A AA L + + ++ +I C+++ + + + H LG+ +
Sbjct: 76 PRETAADLAYEAARKLFAQ-GAVGADQVDFVILCTQAPDYVLPTSACMLQHRLGIPTHAG 134
Query: 107 LFELKQACYSCTAGLQMAINFILSKVSPGA--KALVIATDI-SRFFVTEDKNELTMEWAF 163
++ C GL +A + + GA L++ D S++ DK+ T+
Sbjct: 135 ALDVNLGCSGYVYGLSLAKGLVET----GAARCVLLLTADTYSKYLHPLDKSVRTL---- 186
Query: 164 FEPSG-GAGAVAML--ISDKPEIFQFDIGSNGYY 194
F G GA A A++ + I F G++G
Sbjct: 187 F---GDGASATAVIAEHGELERIGPFVFGTDGRG 217
>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl
transfer, transferase; 2.00A {Streptomyces tendae} PDB:
3t5y_A* 3t6s_A* 3t8e_A 3t5y_B*
Length = 357
Score = 53.4 bits (129), Expect = 1e-08
Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 16/152 (10%)
Query: 47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELII--TCSESGIDFGKSMSTYIHHYLGLNRN 104
+ P A AA + ++D + L++ + GID ++Y+ H R+
Sbjct: 50 EEDAPPRMAARAARAALGR-GDVDPADVSLVLHSSLWFQGIDL-WPAASYVAHEAVG-RH 106
Query: 105 CRLFELKQACYSCTAGLQMAINFILSKVSPGAKA-LVIATDI-SRFFVTEDKNELTMEWA 162
F L Q C +++A ++ S + G A L + ++TM
Sbjct: 107 VPAFGLAQRCNGGMGAIELAGAYLGSGIGAGHAALLTTGDRFAGPRIDRWNSVDVTM--- 163
Query: 163 FFEPSG-GAGAVAMLISDKPE-IFQFDIGSNG 192
+ G GA A+ + D + G +
Sbjct: 164 Y----GDGAAALVLSTRDGFARVLSTATGVDN 191
>3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid
synthase, type III PKS, acyltransferase, transferase;
2.58A {Neurospora crassa}
Length = 465
Score = 52.4 bits (125), Expect = 4e-08
Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 13/164 (7%)
Query: 52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK 111
V A+ A+ + + + I +++ + + Y+ LGL+ L
Sbjct: 111 VPLAVEASRKAMAE-ARLVPAQITHMVSTTCTDSAN-PGYDHYVAKELGLSDRLEKVLLH 168
Query: 112 Q-ACYSCTAGLQMAINFILSKVS--PGAKALVIATDIS--RFFVTEDKNELTMEWAFFEP 166
C A L+ A N L + A+ LV+A ++S + + E
Sbjct: 169 GIGCSGGLAALRTAANLCLGHTARGKPARILVLALEVSTTMVRSELESIDALQETRIGIA 228
Query: 167 SGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDT-CRPIPDSE 209
A A+++S+ ++++ R IPDSE
Sbjct: 229 LFSDCASAVILSNGI-----GEAPGKPAIYDLLGWENRVIPDSE 267
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle
structural genomics center for infectious DI
transferase; 2.35A {Burkholderia xenovorans}
Length = 333
Score = 51.0 bits (123), Expect = 9e-08
Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 26/155 (16%)
Query: 49 EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
A A+ I+ ++ID SI+LII + + S + + + LG+ + F
Sbjct: 63 VTTSDLAFIASQRAIEA-ADIDPQSIDLIIVATSTPDFVFPSTACLLQNKLGIRNHGAAF 121
Query: 109 ELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNELTMEWA----- 162
+++ C + A +FI S ALVI + SR +++
Sbjct: 122 DVQAVCSGFAYAVATADSFIRSGQH--RTALVIGAETFSRI----------LDFKDRTTC 169
Query: 163 --FFEPSG-GAGAVAMLISDKPEIFQFDIGSNGYY 194
F G GAGAV + SD+P + + ++G +
Sbjct: 170 VLF----GDGAGAVILQASDEPGVLASALHADGSH 200
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide,
biosynthetic engineering, catalytic triad, transferase;
HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2
c.95.1.2
Length = 339
Score = 50.6 bits (122), Expect = 1e-07
Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 19/152 (12%)
Query: 49 EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
E + A+ +++ + +D I+L++ + + +S I H LG N F
Sbjct: 58 ETIQVMGVAASRRALEH-AGVDPAEIDLVVVSTMTNFVHTPPLSVAIAHELGA-DNAGGF 115
Query: 109 ELKQACYSCTAGLQMAINFILSKVSPGA--KALVIATDI-SRFFVTEDKNELTMEWAF-F 164
+L AC L +A + + S G LV+AT+ + D++ +F F
Sbjct: 116 DLSAACAGFCHALSIAADAVES----GGSRHVLVVATERMTDVIDLADRS--L---SFLF 166
Query: 165 EPSG-GAGAVAMLISDKPEIFQFDIGSNGYYS 195
G GAGA + SD P I G +G
Sbjct: 167 ---GDGAGAAVVGPSDVPGIGPVVRGIDGTGL 195
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase;
HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2
c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A*
2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Length = 317
Score = 49.4 bits (119), Expect = 3e-07
Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 27/155 (17%)
Query: 49 EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
E + AA I+ + I+K+ I LI+ + S S + I LG+ + C F
Sbjct: 49 ETVSTMGFEAATRAIEM-AGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGI-KGCPAF 106
Query: 109 ELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNELTMEWA----- 162
++ AC T L +A ++ S ALV+ +D+ +R +
Sbjct: 107 DVAAACAGFTYALSVADQYVKSGAV--KYALVVGSDVLART----------CDPTDRGTI 154
Query: 163 --FFEPSG-GAGAVAMLISDKPEIFQFDIGSNGYY 194
F G GAGA + S++P I + ++G Y
Sbjct: 155 IIF----GDGAGAAVLAASEEPGIISTHLHADGSY 185
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; 2.70A {Haemophilus influenzae}
Length = 323
Score = 49.0 bits (118), Expect = 4e-07
Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 31/157 (19%)
Query: 49 EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
E + AA I+ + I+ IELII + S S + + L + + F
Sbjct: 56 ETVATMGFEAAKNAIEA-AQINPQDIELIIVATTSHSHAYPSAACQVQGLLNI-DDAISF 113
Query: 109 ELKQACYSCTAGLQMAINFILSKVSPGA--KALVIATDI-SRFFVTEDKNELTMEWA--- 162
+L AC L +A FI + G KALVI +D+ SR ++
Sbjct: 114 DLAAACTGFVYALSVADQFIRA----GKVKKALVIGSDLNSRK----------LDETDRS 159
Query: 163 ----FFEPSG-GAGAVAMLISDKPEIFQFDIGSNGYY 194
F G GAGAV + S++ I + ++
Sbjct: 160 TVVLF----GDGAGAVILEASEQEGIISTHLHASADK 192
>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A
{Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2
PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A*
2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A
Length = 335
Score = 48.7 bits (117), Expect = 5e-07
Identities = 30/150 (20%), Positives = 49/150 (32%), Gaps = 15/150 (10%)
Query: 49 EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
E S A A + N + + I+ +I + + + + LG F
Sbjct: 59 ESAASMATEACRRALSN-AGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAK-GILGF 116
Query: 109 ELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNELTMEWAF-FEP 166
+L L A + I + A LV+ T+ S D+ F F
Sbjct: 117 DLSAGAAGFGYALGAAADMIRGGGA--ATMLVVGTEKLSPTIDMYDRG--N---CFIF-- 167
Query: 167 SG-GAGAVAMLISDKPEIFQFDIGSNGYYS 195
GA AV + + I GS+G +
Sbjct: 168 -ADGAAAVVVGETPFQGIGPTVAGSDGEQA 196
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen
condensation reaction, transfera; HET: CER; 1.70A
{Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A
3s20_A* 3fk5_A
Length = 345
Score = 48.0 bits (115), Expect = 9e-07
Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 23/144 (15%)
Query: 49 EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
A AA + + +NI I L+I S S S ++ + LG++ +C F
Sbjct: 66 VQASDAATQAARKALID-ANIGIEKIGLLINTSVSRDYLEPSTASIVSGNLGVSDHCMTF 124
Query: 109 ELKQAC----YSCTAGLQMAINFILSKVSPGA--KALVIATDISRFFVTEDKNELTMEWA 162
++ AC G+ +A + G ALV+ + + + +T
Sbjct: 125 DVANACLAFIN----GMDIAARMLER----GEIDYALVVDGETANLVYEKTLERMTSPDV 176
Query: 163 FFEPSG--------GAGAVAMLIS 178
E G GA AM+++
Sbjct: 177 TEEEFRNELAALTLGCGAAAMVMA 200
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis}
PDB: 3il5_A* 3il4_A*
Length = 321
Score = 47.5 bits (114), Expect = 1e-06
Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 31/158 (19%)
Query: 49 EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
E+ A L++ S + I+ I+ + + S++ + +G F
Sbjct: 50 ENTSDLCHQVAKQLLEK-SGKQASEIDFILVATVTPDFNMPSVACQVQGAIGA-TEAFAF 107
Query: 109 ELKQACYSCTAGLQMAINFILSKVSPGA--KALVIATDI-SRFFVTEDKNELTMEWA--- 162
++ AC L MA +LS G LVI + S+ ++W
Sbjct: 108 DISAACSGFVYALSMAEKLVLS----GRYQTGLVIGGETFSKM----------LDWTDRS 153
Query: 163 ----FFEPSG-GAGAVAMLISDKPEIFQFDIGSNGYYS 195
F G GA V + ++ P + ++G
Sbjct: 154 TAVLF----GDGAAGVLIEAAETPHFLNEKLQADGQRW 187
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5,
lipid metabolism, structural genomics; 2.10A {Aquifex
aeolicus}
Length = 309
Score = 44.8 bits (107), Expect = 8e-06
Identities = 36/158 (22%), Positives = 57/158 (36%), Gaps = 32/158 (20%)
Query: 49 EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
E A AA + +N+ ++LII + + S + + L + F
Sbjct: 48 ETITYMATQAAKEALRE-ANLSPEELDLIILATLTPQKRFPSTACLVQAQLKA-KGVYAF 105
Query: 109 ELKQACYSCTAGLQMAINFILSKVSPGA--KALVIATDI-SRFFVTEDKNELTMEWA--- 162
++ AC L +A +FI S G LVI + S ++W
Sbjct: 106 DISAACSGFIYALDIADSFIKS----GKAKNVLVIGAEKLSEA----------VDWEDRS 151
Query: 163 ----FFEPSG-GAGAVAMLIS-DKPEIFQFDIGSNGYY 194
F G GAGAV + S DK +I + + G
Sbjct: 152 TCVLF----GDGAGAVVVTRSEDKSDILATRMYAEGSL 185
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA,
transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa
PAO1} PDB: 3h76_A 3h77_A*
Length = 359
Score = 44.5 bits (106), Expect = 1e-05
Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 17/152 (11%)
Query: 49 EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
+ + + AA I+ + + I+L++ + S S + I LGL R+ +
Sbjct: 72 QAVSALMVPAARQAIEA-AGLLPEDIDLLLVNTLSPDHHDPSQACLIQPLLGL-RHIPVL 129
Query: 109 ELKQACYSCTAGLQMAINFILSKVSPGA--KALVIATDI-SRFFVTEDKNELTMEWAFFE 165
+++ GLQMA IL+ G LV+ ++ S+ D+
Sbjct: 130 DIRAQASGLLYGLQMARGQILA----GLARHVLVVCGEVLSKRMDCSDRGRNLS--ILL- 182
Query: 166 PSG-GAGAVAMLISDKPE--IFQFDIGSNGYY 194
G GAGAV + + E + +G++G Y
Sbjct: 183 --GDGAGAVVVSAGESLEDGLLDLRLGADGNY 212
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase,
acyltransferase, lipid synthesis, multifun enzyme; 1.81A
{Pseudomonas aeruginosa}
Length = 331
Score = 41.7 bits (99), Expect = 1e-04
Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 36/160 (22%)
Query: 49 EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
A+ AA+ + + + ++ ++ ++ + +G + + + LGL F
Sbjct: 51 LGSGDLALRAASAALAS-AGLE--RVDAVVLATSTGDFCCPATAPRVAARLGL-VGALAF 106
Query: 109 ELKQACYSCTAGLQMAINFILSKVSPGA--KALVIATDI-SRFFVTEDKNELTMEWA--- 162
+L A GL + I + G AL++ D S ++ A
Sbjct: 107 DLSAAATGFVYGLASVGSLISA----GLADSALLVGVDTFSHT----------LDPADRS 152
Query: 163 ----FFEPSG-GAGAVAMLISDKPE---IFQFDIGSNGYY 194
F G GAGAV + D E + FD+GS+G+
Sbjct: 153 TRALF----GDGAGAVVLRAGDAEEEGALLAFDLGSDGHQ 188
>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics,
PSI-2, protein structure initiative; HET: MSE; 1.45A
{Rhodopseudomonas palustris}
Length = 392
Score = 41.5 bits (98), Expect = 1e-04
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQAC 114
A+ AA I+ + I ++ + +M+ + + LGL F++ AC
Sbjct: 121 AVTAAEQAIER-WGKPRERIGAVLCACSNMQRAYPAMAIEVQNALGLGGFA--FDMNVAC 177
Query: 115 YSCTAGLQMAINFILSKVSPGA--KALVIATDI-SRF 148
S T GL+ A +F+ G+ L++ +I S
Sbjct: 178 SSATFGLKTAADFVGG----GSVDAVLMVNPEICSGH 210
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 1e-04
Identities = 50/276 (18%), Positives = 88/276 (31%), Gaps = 91/276 (32%)
Query: 3 KVGIEAINLYGG----SVFIDVIELAKYRKL-DTVRFENLLMQQKSVSLPYEDPVSFAIN 57
+ AI +GG + + EL R L T Y V I
Sbjct: 153 NAQLVAI--FGGQGNTDDYFE--EL---RDLYQT----------------YHVLVGDLIK 189
Query: 58 AAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHH--------YLGLNR-NCRLF 108
+A + L ++ ++ G++ + ++ + YL +C L
Sbjct: 190 FSAETLSELIRTTLDAEKVF----TQGLNILE----WLENPSNTPDKDYLLSIPISCPLI 241
Query: 109 ELKQ-ACYSCTA---GLQMA-INFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWA- 162
+ Q A Y TA G + L + ++ LV A I+ T W
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA----------ETDSWES 291
Query: 163 FFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRP--IPDSEAGN-------- 212
FF A+ +L F IG Y ++ + P + DS N
Sbjct: 292 FFVSV--RKAITVL---------FFIGVRCYEAYPNT-SLPPSILEDSLENNEGVPSPML 339
Query: 213 --ADLS---LLSYLDCCAQSFKEYKKRVQYKIIVYN 243
++L+ + Y++ K+V+ I + N
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPA-GKQVE--ISLVN 372
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.47
Identities = 27/240 (11%), Positives = 68/240 (28%), Gaps = 79/240 (32%)
Query: 15 SVFIDVIELAKYRKLDTVRFENLLMQQKSVSLP------------YEDPVSFAINAAAPL 62
++V+E A+YRK+ F+ L + S +P D +
Sbjct: 360 ESSLNVLEPAEYRKM----FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV-----NK 410
Query: 63 IDNLSNIDKNS-----------IELIITCSESGI------------------DFGK-SMS 92
+ S ++K +EL + D +
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 93 TYIHHYLG--LN--RNCRLFELKQACYSCTAGLQMAINFILSKV-----SPGAKALVIAT 143
Y + ++G L + L + + + F+ K+ + A ++ T
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVF-------LDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 144 --DISRF--FVTEDKNELTM---EWAFFEPSGGAGAVAMLISDKPEIFQFDI--GSNGYY 194
+ + ++ ++ + F P ++ S ++ + + +
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE---NLICSKYTDLLRIALMAEDEAIF 580
>3ach_A Beta-1,4-endoglucanase; beta-jellyroll, cellulose-binding domain,
hydrolase; HET: BGC; 1.40A {Clostridium josui} PDB:
3acf_A* 3acg_A* 3aci_A*
Length = 203
Score = 29.4 bits (65), Expect = 0.86
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 154 KNELTMEWAFFEPSGG--AGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAG 211
K LT+ AF PS G A A + + + ++G Y F+V I D +
Sbjct: 112 KGSLTISLAFAPPSLGFWAQATGDVNIPLSSLSKMKKTTDGLYHFQVKYDLDKINDGKVL 171
Query: 212 NADLSLLSYLDCCAQSFKEYKKRV 235
A+ L A ++ +
Sbjct: 172 TANTVLRDITIVVADGNSDFAGTM 195
>2i7g_A Monooxygenase, AGR_C_4197P; alpha-beta, TIM barrel, helix-bundle,
structural genomics, P protein structure initiative;
HET: MSE; 1.73A {Agrobacterium tumefaciens str}
Length = 376
Score = 29.3 bits (66), Expect = 1.3
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 43 SVSLPYEDPVSFAINAAAPLIDNLSN 68
L +DPV + +D LSN
Sbjct: 101 VSVLSSDDPVRVFQQFS--TVDLLSN 124
>2wgk_A 3,6-diketocamphane 1,6 monooxygenase; camphor pathway,
oxidoreductase; 2.00A {Pseudomonas putida}
Length = 378
Score = 29.1 bits (65), Expect = 1.3
Identities = 4/25 (16%), Positives = 8/25 (32%), Gaps = 2/25 (8%)
Query: 44 VSLPYEDPVSFAINAAAPLIDNLSN 68
LP++ P A + +
Sbjct: 78 HLLPHQHPAKLATMIG--WLSQILE 100
>1luc_B Bacterial luciferase; monooxygenase, flavoprotein; 1.50A {Vibrio
harveyi} SCOP: c.1.16.1 PDB: 1brl_B 1bsl_A 1xkj_A
3fgc_B*
Length = 324
Score = 28.2 bits (63), Expect = 2.6
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 43 SVSLPYEDPVSFAINAAAPLIDNLSN 68
+ + PV A A L+D +S
Sbjct: 75 NHVITTHHPVRVAEEAC--LLDQMSE 98
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 27.5 bits (61), Expect = 2.9
Identities = 7/41 (17%), Positives = 10/41 (24%)
Query: 182 EIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLD 222
+ + F V D G A L + L
Sbjct: 85 QPLTVIVTPVSKLHFRVWSHQTLKSDVLLGTAALDIYETLK 125
>1gkm_A Histidase, HAL, histidine ammonia-lyase; histidine degradation;
HET: MDO; 1.0A {Pseudomonas putida} SCOP: a.127.1.2 PDB:
1b8f_A* 1gkj_A* 1eb4_A* 1gk3_A 1gk2_A
Length = 507
Score = 27.6 bits (62), Expect = 4.2
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 7/42 (16%)
Query: 49 EDPVSFAINAA---APLIDNLSNIDKNSIELIITCSESGIDF 87
ED VS A A + +N + +IE + C G+D
Sbjct: 412 EDHVSMAPAAGKRLWEMAENTRGV--LAIEWLGAC--QGLDL 449
>3mst_A Putative nitrate transport protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 1.35A {Thermoplasma
volcanium}
Length = 244
Score = 27.1 bits (59), Expect = 5.9
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 9/51 (17%)
Query: 35 ENLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGI 85
ENL Q V +P+ PVSF + ++ + CSE+G
Sbjct: 13 ENLYFQGMDVGMPFSGPVSFPLLVIE---------EELPFRIHNICSETGK 54
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate
aminotransferase, pyridoxal-5-phosphate, SAD, glycolate
pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae}
SCOP: c.67.1.3
Length = 385
Score = 26.5 bits (59), Expect = 9.8
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 116 SCTAGLQMAINFILSKVSPGAKALVIAT 143
S T G + + + +P LV++T
Sbjct: 67 SGTLGWDIFASNFILSKAPNKNVLVVST 94
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.399
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,788,133
Number of extensions: 221106
Number of successful extensions: 552
Number of sequences better than 10.0: 1
Number of HSP's gapped: 505
Number of HSP's successfully gapped: 40
Length of query: 245
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 154
Effective length of database: 4,160,982
Effective search space: 640791228
Effective search space used: 640791228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.2 bits)