RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2407
(245 letters)
>d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase
MvaS {Staphylococcus aureus [TaxId: 1280]}
Length = 166
Score = 83.7 bits (206), Expect = 1e-20
Identities = 62/180 (34%), Positives = 101/180 (56%), Gaps = 18/180 (10%)
Query: 4 VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAAAPL 62
+GI+ IN Y ++D+ +LA+ R++D +F + Q + +VS +D VS NAA
Sbjct: 2 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAK-- 59
Query: 63 IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQ 122
D +++ DK I ++I +ES +D K+ + IH+ LG+ R FE+K+ACY+ T +Q
Sbjct: 60 -DIITDEDKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEMKEACYAATPAIQ 118
Query: 123 MAINFILSKVSPGAKALVIATDI-SRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP 181
+A +++ ++ P K LVIATD + EP+ GAGAVAM+I+ P
Sbjct: 119 LAKDYLATR--PNEKVLVIATDTARYGLNSGG-----------EPTQGAGAVAMVIAHNP 165
>d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago
sativa) [TaxId: 3879]}
Length = 235
Score = 70.6 bits (172), Expect = 3e-15
Identities = 25/135 (18%), Positives = 51/135 (37%), Gaps = 6/135 (4%)
Query: 49 EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
+ AA I K+ I +I C+ SG+D + R
Sbjct: 100 VEVPRLGKEAAVKAIKE-WGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYM 158
Query: 109 ELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNELTMEWAFFEPS 167
+Q C++ L++A + + GA+ LV+ +++ + F + ++ +
Sbjct: 159 MYQQGCFAGGTVLRLAKDLAENN--KGARVLVVCSEVTAVTFRGPS--DTHLDSLVGQAL 214
Query: 168 GGAGAVAMLISDKPE 182
G GA A+++ P
Sbjct: 215 FGDGAAALIVGSDPV 229
>d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206
{Streptomyces coelicolor [TaxId: 1902]}
Length = 200
Score = 58.2 bits (140), Expect = 4e-11
Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 9/131 (6%)
Query: 52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK 111
S +D+ + + I++II S +G + I+ + ++ +
Sbjct: 76 KSRVPAVIQRALDD-AELLATDIDVIIYVSCTGFMMPSLTAWLINEMGFDSTTRQIPIAQ 134
Query: 112 QACYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNELTMEWAF-FEPSGG 169
C + A + A +F + P A AL++A + S + D ++ F G
Sbjct: 135 LGCAAGGAAINRAHDFCTAY--PEANALIVACEFCSLCYQPTDLGVGSLLCNGLF----G 188
Query: 170 AGAVAMLISDK 180
G A ++ +
Sbjct: 189 DGIAAAVVRGR 199
>d1hnja1 c.95.1.2 (A:1-174) Ketoacyl-ACP synthase III (FabH)
{Escherichia coli [TaxId: 562]}
Length = 174
Score = 54.1 bits (129), Expect = 1e-09
Identities = 39/183 (21%), Positives = 66/183 (36%), Gaps = 10/183 (5%)
Query: 2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAAP 61
+ I Y +L K ++ + VS AA
Sbjct: 1 MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAAT 60
Query: 62 LIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGL 121
++ I+K+ I LI+ + S S + I LG+ + C F++ AC T L
Sbjct: 61 RAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGI-KGCPAFDVAAACAGFTYAL 119
Query: 122 QMAINFILSKVSPGAKALVIATD-ISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
+A ++ K ALV+ +D ++R D+ GAGA + S++
Sbjct: 120 SVADQYV--KSGAVKYALVVGSDVLARTCDPTDRG------TIIIFGDGAGAAVLAASEE 171
Query: 181 PEI 183
P I
Sbjct: 172 PGI 174
>d1xpma2 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl CoA
synthase MvaS {Staphylococcus aureus [TaxId: 1280]}
Length = 221
Score = 46.8 bits (111), Expect = 5e-07
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 191 NGYYSFEVMDTCRPIPDSEA-GNADLSLLSYLDCCAQSFKEYKKRVQYKI 239
Y+ +V D RP + LS +Y+ QS+ EY KR +
Sbjct: 8 AVAYTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKRQGKSL 57
>d1u6ea1 c.95.1.2 (A:-10-174) Ketoacyl-ACP synthase III (FabH)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 184
Score = 45.3 bits (106), Expect = 1e-06
Identities = 25/180 (13%), Positives = 55/180 (30%), Gaps = 12/180 (6%)
Query: 4 VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAAPLI 63
VG+ ++ Y + E+ ++ + ++ + A
Sbjct: 13 VGLLSVGAYRPERVVTNDEICQHIDSSDEWIYTRTGIKTRRFAADDESAASMATEACRRA 72
Query: 64 DNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQM 123
+ + + I+ +I + + + + LG + F+L L
Sbjct: 73 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLG-AKGILGFDLSAGAAGFGYALGA 131
Query: 124 AINFILSKVSPGAKALVIATDI-SRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPE 182
A + I A LV+ T+ S D+ F GA A+++ + P
Sbjct: 132 AADMIRGG--GAATMLVVGTEKLSPTIDMYDRG----NCFIF----ADGAAAVVVGETPF 181
>d1mzja1 c.95.1.2 (A:3-183) Priming beta-ketosynthase from the r1128
polyketide biosynthetic pathway {Streptomyces sp. r1128
[TaxId: 140437]}
Length = 181
Score = 40.6 bits (94), Expect = 5e-05
Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 8/166 (4%)
Query: 18 IDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELI 77
+ E+ + E + ++ + AA+ + +D I+L+
Sbjct: 24 VSNKEVCTWIDSTEEWIETRTGIRSRRIAEPDETIQVMGVAASRRALEHAGVDPAEIDLV 83
Query: 78 ITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAK 137
+ + + +S I H LG N F+L AC L +A + + S
Sbjct: 84 VVSTMTNFVHTPPLSVAIAHELG-ADNAGGFDLSAACAGFCHALSIAADAVESG--GSRH 140
Query: 138 ALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPEI 183
LV+AT+ + D + ++ + F GAGA + SD P I
Sbjct: 141 VLVVATERMTDVI--DLADRSLSFLF---GDGAGAAVVGPSDVPGI 181
>d2r48a1 c.44.2.2 (A:2-104) Mannose-specific enzyme IIBCA component
ManP, N-terminal domain {Bacillus subtilis [TaxId:
1423]}
Length = 103
Score = 24.6 bits (54), Expect = 6.1
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 19 DVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSF---AINAAAPL 62
D I +A R ++ RF + V P A+N P+
Sbjct: 56 DAIIIAADRSVNKDRFIGKKLLSVGVQDGIRKPEELIQKALNGDIPV 102
>d1i7qa_ d.161.1.1 (A:) Anthranilate synthase
aminodeoxyisochorismate synthase/lyase subunit, TrpE
{Serratia marcescens [TaxId: 615]}
Length = 517
Score = 25.4 bits (54), Expect = 7.9
Identities = 25/204 (12%), Positives = 55/204 (26%), Gaps = 19/204 (9%)
Query: 43 SVSLPY-EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL 101
V Y DP + L L ++ L ES + + L +
Sbjct: 9 KVQASYRGDPTT--------LFHQLCGARPATLLL-----ES-AEINDKQNLQ--SLLVI 52
Query: 102 NRNCRLFELKQACY--SCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTM 159
+ R+ L + TA + + + P + F D +
Sbjct: 53 DSALRITALGHTVSVQALTANGPALLPLLDEALPPEVRNQARPNGRELTFPAIDAVQDED 112
Query: 160 EWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLS 219
A + + D P + + G ++++++ +P
Sbjct: 113 ARLRSLSVFDALRTILTLVDSPADEREAVMLGGLFAYDLVAGFENLPALRQDQRCPDFCF 172
Query: 220 YLDCCAQSFKEYKKRVQYKIIVYN 243
YL + + + V++
Sbjct: 173 YLAETLLVLDHQRGSARLQASVFS 196
>d2r4qa1 c.44.2.2 (A:171-273) Fructose-specific enzyme IIABC
component FruA, middle domain {Bacillus subtilis [TaxId:
1423]}
Length = 103
Score = 24.2 bits (53), Expect = 9.2
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 19 DVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSF---AINAAAPL 62
I +A ++++ RF+ + Q V+ P A+N AP+
Sbjct: 56 PAIIVAADKQVEMERFKGKRVLQVPVTAGIRRPQELIEKAMNQDAPI 102
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.399
Gapped
Lambda K H
0.267 0.0709 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 917,647
Number of extensions: 41393
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 15
Length of query: 245
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,268,006
Effective search space: 205416972
Effective search space used: 205416972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.8 bits)