BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2408
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 131/258 (50%), Gaps = 18/258 (6%)
Query: 50 LFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA 109
++G ++H+GYW+++ + + +D+L+ I + G R +D+GCG G +RLA A
Sbjct: 23 IWGENLHFGYWEDAGADVSVDDATDRLTDEXIALLDVRSGDRVLDVGCGIGKPAVRLATA 82
Query: 110 KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM 169
+ RV GI+IS+ Q A A A GL ++V F + DA +LPF++ SFD W ES+ H
Sbjct: 83 RDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAXDLPFEDASFDAVWALESLHHX 142
Query: 170 -NHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFIL----VEHYP 224
+ AL E RVL+ G + + D LL+ + KE V +L ++ Y
Sbjct: 143 PDRGRALREXARVLRPGGTVAIADFVLLAPVEGAK--KEAVDAFRAGGGVLSLGGIDEYE 200
Query: 225 DLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPNP---EKSIDNWLYLF 281
+ ++ + DI++ P LV K EA + ++ P + +D + F
Sbjct: 201 SDVRQAELVVTSTVDISAQARPSLV-KTAEAFENARSQV-----EPFXGAEGLDRXIATF 254
Query: 282 KYMSK--NLGYIIVTAKK 297
+ +++ GY+++ A+K
Sbjct: 255 RGLAEVPEAGYVLIGARK 272
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 59 YWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGIT 118
+W++ NS++ + GS + + I + + K +D+GCG G +L++ G + G+
Sbjct: 26 FWNQ-NSQEXWDSGS-RSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRT-GYKAVGVD 82
Query: 119 ISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNE 177
IS E ++ K G ++F+ GD +LPF+N+ F+ S+ ALNE
Sbjct: 83 IS----EVXIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIXAINSLEWTEEPLRALNE 138
Query: 178 ARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELI 235
+RVLKS + L + +N + K++ N + L+ + GF+++
Sbjct: 139 IKRVLKSDGYACIAILG-PTAKPRENSYPRLYGKDVVCNTXXPWEFEQLVKEQGFKVV 195
>pdb|4F84|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Sam
pdb|4F85|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase
pdb|4F86|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|B Chain B, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|C Chain C, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|D Chain D, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|E Chain E, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|F Chain F, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|G Chain G, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|H Chain H, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|I Chain I, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|J Chain J, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|K Chain K, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|L Chain L, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
Length = 320
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 90/217 (41%), Gaps = 23/217 (10%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG 145
+ G +D GCG G S + + GC+V+G+T+S Q E + A+ G+ D V
Sbjct: 123 VGPGDTLVDAGCGRGGSMVMAHQRFGCKVEGVTLSAAQAEFGNRRARELGIDDHVRSRVC 182
Query: 146 DALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLK-SGSILTLTDL--PLL-SVSKN 201
+ L+ PF+ + W ES +++ E R L+ G +T+T P SK
Sbjct: 183 NMLDTPFEKGTVAASWNNESSMYVDLHDVFAEHSRFLRVGGRYVTVTGCWNPRYGQPSKW 242
Query: 202 DNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKK 261
++ + + NIHS Y + + + D+T +P + T + +T +
Sbjct: 243 VSQINAHFECNIHSR----REYLRAMADNRLVPQTVVDLTPETLPYWELRATSSLVTGIE 298
Query: 262 EIYKSIPNPEKSIDNWLYLFKYMSKNLGYIIVTAKKI 298
E ++ Y + Y+++ A ++
Sbjct: 299 EA---------------FIESYRDGSFQYVLIAADRV 320
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 19/185 (10%)
Query: 68 NFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAK-AKGCRVDGITISKFQQES 126
++ ++ L +++ + T G + ++ GCG G + LAK + I IS E
Sbjct: 17 RLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEK 76
Query: 127 AMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH-SAALNEARRVLKSG 185
A + + G+ + V FL + +LPF++ SFD + + H+ AL ++VLK G
Sbjct: 77 ARENTEKNGIKN-VKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPG 135
Query: 186 SILTLTDLPLLSVSKNDN------------KFKEYVKKNIHSNFILVEHYPDLLNKSGFE 233
+T+ + S + + + Y K N + + + YP LL +SGFE
Sbjct: 136 GTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYXKGN---SLVGRQIYP-LLQESGFE 191
Query: 234 LIKID 238
I+++
Sbjct: 192 KIRVE 196
>pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ7|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ8|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sinefungin And Po4
pdb|3UJ9|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphocholine
pdb|3UJA|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphoethanolamine
pdb|3UJB|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|3UJB|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|4FGZ|A Chain A, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
pdb|4FGZ|B Chain B, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
Length = 266
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 7/182 (3%)
Query: 70 AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMK 129
+ G + ++ +++ + + + +DIG G G + + + G GI I M
Sbjct: 37 SSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDIC--SNIVNMA 94
Query: 130 TAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM---NHSAALNEARRVLKSGS 186
+ G +K+ F D L F ++FD + ++I H+ N + + + LK
Sbjct: 95 NERVSGN-NKIIFEANDILTKEFPENNFDLIYSRDAILHLSLENKNKLFQKCYKWLKPTG 153
Query: 187 ILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMP 246
L +TD D++FKEYVK+ ++ I VE Y D+L F+ + D++ +
Sbjct: 154 TLLITDYCATEKENWDDEFKEYVKQRKYT-LITVEEYADILTACNFKNVVSKDLSDYWNQ 212
Query: 247 LL 248
LL
Sbjct: 213 LL 214
>pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 7/182 (3%)
Query: 70 AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMK 129
+ G + ++ +++ + + + +DIG G G + + + G GI I M
Sbjct: 37 SSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDIC--SNIVNMA 94
Query: 130 TAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM---NHSAALNEARRVLKSGS 186
+ G +K+ F D L F ++FD + ++I H+ N + + + LK
Sbjct: 95 NERVSGN-NKIIFEANDILTKEFPENNFDLIYSRDAILHLSLENKNKLFQKCYKWLKPTG 153
Query: 187 ILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMP 246
L +TD D++FKEYVK+ ++ I VE Y D+L F+ + D++ +
Sbjct: 154 TLLITDYCATEKENWDDEFKEYVKQRKYT-LITVEEYADILTACNFKNVVSKDLSDYWNQ 212
Query: 247 LL 248
LL
Sbjct: 213 LL 214
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 82/184 (44%), Gaps = 16/184 (8%)
Query: 65 SKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQ 124
SK FA ++ +IN+ IT G IDIG G G I LAK + + SK
Sbjct: 21 SKTLFAPIYPIIAENIINRFGITAGT-CIDIGSGPGALSIALAKQSDFSIRALDFSKHXN 79
Query: 125 ESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSA-ALNEARRVLK 183
E A+K L D++ + GD N+P +++ D S+F A A E R+LK
Sbjct: 80 EIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILK 139
Query: 184 SGSIL---------TLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSG--- 231
SG L D + + +KE+ +KNI VE + ++L++ G
Sbjct: 140 SGGKTYIGGGFGNKELRDSISAEXIRKNPDWKEFNRKNISQEN--VERFQNVLDEIGISS 197
Query: 232 FELI 235
+E+I
Sbjct: 198 YEII 201
>pdb|3UJ6|A Chain A, Semet Phosphoethanolamine Methyltransferase From
Plasmodium Falciparum In Complex With Sam And Po4
Length = 266
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 7/182 (3%)
Query: 70 AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMK 129
+ G + ++ +++ + + + +DIG G G + + G GI I A +
Sbjct: 37 SSGGLEATKKILSDIELNENSKVLDIGSGLGGGCXYINEKYGAHTHGIDICSNIVNXANE 96
Query: 130 TAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM---NHSAALNEARRVLKSGS 186
+K+ F D L F ++FD + ++I H+ N + + + LK
Sbjct: 97 RVSGN---NKIIFEANDILTKEFPENNFDLIYSRDAILHLSLENKNKLFQKCYKWLKPTG 153
Query: 187 ILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMP 246
L +TD D++FKEYVK+ ++ I VE Y D+L F+ + D++ +
Sbjct: 154 TLLITDYCATEKENWDDEFKEYVKQRKYT-LITVEEYADILTACNFKNVVSKDLSDYWNQ 212
Query: 247 LL 248
LL
Sbjct: 213 LL 214
>pdb|2O57|A Chain A, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|B Chain B, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|C Chain C, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|D Chain D, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
Length = 297
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 5/149 (3%)
Query: 49 VLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSIT----KGQRFIDIGCGFGLSGI 104
V G +H G + E +D + S + + ++ + T + + +D+G G+G +
Sbjct: 39 VWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAXTGVLQRQAKGLDLGAGYGGAAR 98
Query: 105 RLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFE 164
L + G +D + I+ Q + + GL D + +G L +P +++S+D W +
Sbjct: 99 FLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD 158
Query: 165 SIFHM-NHSAALNEARRVLKSGSILTLTD 192
+ H + E RVLK + +TD
Sbjct: 159 AFLHSPDKLKVFQECARVLKPRGVXAITD 187
>pdb|3VC1|A Chain A, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|B Chain B, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|C Chain C, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|D Chain D, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|E Chain E, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|F Chain F, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|G Chain G, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|H Chain H, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|I Chain I, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|J Chain J, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|K Chain K, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|L Chain L, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|A Chain A, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|B Chain B, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|C Chain C, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|D Chain D, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|E Chain E, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|F Chain F, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|G Chain G, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|H Chain H, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|I Chain I, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|J Chain J, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|K Chain K, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|L Chain L, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
Length = 312
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 8/171 (4%)
Query: 92 FIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP 151
+D GCG G S + + G RV+G+T+S Q + + A+ + D V + L+ P
Sbjct: 121 LVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP 180
Query: 152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLK-SGSILTLTDL--PLL-SVSKNDNKFKE 207
FD + W ES +++ +E R LK G +T+T P SK ++
Sbjct: 181 FDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINA 240
Query: 208 YVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLT 258
+ + NIHS Y + + I D+T +P + T + +T
Sbjct: 241 HFECNIHSR----REYLRAMADNRLVPHTIVDLTPDTLPYWELRATSSLVT 287
>pdb|3UJC|A Chain A, Phosphoethanolamine Methyltransferase Mutant (H132a) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 7/182 (3%)
Query: 70 AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMK 129
+ G + ++ +++ + + + +DIG G G + + + G GI I M
Sbjct: 37 SSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDIC--SNIVNMA 94
Query: 130 TAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM---NHSAALNEARRVLKSGS 186
+ G +K+ F D L F ++FD + ++I + N + + + LK
Sbjct: 95 NERVSGN-NKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTG 153
Query: 187 ILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMP 246
L +TD D++FKEYVK+ ++ I VE Y D+L F+ + D++ +
Sbjct: 154 TLLITDYCATEKENWDDEFKEYVKQRKYT-LITVEEYADILTACNFKNVVSKDLSDYWNQ 212
Query: 247 LL 248
LL
Sbjct: 213 LL 214
>pdb|3KKZ|A Chain A, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250.
pdb|3KKZ|B Chain B, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250
Length = 267
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%)
Query: 85 SITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLH 144
++T+ DIGCG G LA +V G+ + + A+ GL ++V +
Sbjct: 43 NLTEKSLIADIGCGTGGQTXVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIV 102
Query: 145 GDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193
G +LPF N+ D W +I+++ LNE R+ LK G L +++
Sbjct: 103 GSXDDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSEC 151
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 90 QRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN 149
+R +D+ CG G+ + LA+ +G V G+ + + A + AK L K+ FL GD L
Sbjct: 43 RRVLDLACGTGIPTLELAE-RGYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLE 99
Query: 150 LPFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLP 194
+ F N+ FF +I + + ++ LK G + +TD P
Sbjct: 100 IAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVF-ITDFP 146
>pdb|1VLM|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
pdb|1VLM|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
Length = 219
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 69/166 (41%), Gaps = 20/166 (12%)
Query: 76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEG 135
LS + K + +G R ++IG G G + L I I E + A+ G
Sbjct: 36 LSELQAVKCLLPEG-RGVEIGVGTGRFAVPLK---------IKIGVEPSERXAEIARKRG 85
Query: 136 LLDKVNFLHGDALNLPFDNDSFDGGWFFESI-FHMNHSAALNEARRVLKSGSILTLTDL- 193
+ L G A NLP ++SFD +I F + AL EA R+LK G L + +
Sbjct: 86 VF----VLKGTAENLPLKDESFDFALXVTTICFVDDPERALKEAYRILKKGGYLIVGIVD 141
Query: 194 --PLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKI 237
L NK K KN + F E DL K+GFE K+
Sbjct: 142 RESFLGREYEKNKEKSVFYKN--ARFFSTEELXDLXRKAGFEEFKV 185
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Query: 72 GSDKLSRIMIN-KTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKT 130
GS + +R ++ +T + DIGCG G + LA ++ GI + E +
Sbjct: 29 GSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNEN 88
Query: 131 AKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTL 190
A D+V + G NLPF N+ D W +I+++ +NE + LK G + +
Sbjct: 89 AVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAV 148
Query: 191 TDLPLLSVSK 200
++ + +
Sbjct: 149 SEASWFTSER 158
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Query: 72 GSDKLSRIMIN-KTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKT 130
GS + +R ++ +T + DIGCG G + LA ++ GI + E +
Sbjct: 35 GSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNEN 94
Query: 131 AKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTL 190
A D+V + G NLPF N+ D W +I+++ +NE + LK G + +
Sbjct: 95 AVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAV 154
Query: 191 TDLPLLSVSK 200
++ + +
Sbjct: 155 SEASWFTSER 164
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA 147
K + +D+ CG G L + G V G+ IS+ A + AK+ V F+ GDA
Sbjct: 38 KRGKVLDLACGVGGFSF-LLEDYGFEVVGVDISEDXIRKAREYAKSRE--SNVEFIVGDA 94
Query: 148 LNLPFDNDSFDGGWFFESIFH---MNHSAALNEARRVLK-SGS-ILTLTDL 193
L F++ +FD F +SI H + + E RRVLK SG I TDL
Sbjct: 95 RKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIXYFTDL 145
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG-- 145
+G+ +D+G G G+ I A+A RV + S Q+ A + + GL D+V+ L G
Sbjct: 83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQ-AREVVRFNGLEDRVHVLPGPV 141
Query: 146 DALNLPFDNDSFDGGWFFESIFHMNHSAALNEAR-RVLKSGSILTLTDLPLLSVSKNDNK 204
+ + LP D+ W + H + +++ AR + LK G +L L V +D
Sbjct: 142 ETVELPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFIVPISDQM 201
Query: 205 FK 206
+
Sbjct: 202 LE 203
>pdb|1KP9|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KP9|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KPH|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
Length = 287
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 83/200 (41%), Gaps = 30/200 (15%)
Query: 66 KDNFAQGSDKLSRI--MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQ 123
+D+ ++++I + K + G +D+GCG+G + +R + V G+T+SK Q
Sbjct: 40 RDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQ 99
Query: 124 QESAMK-TAKAEGLLDKVNFLHG-DALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRV 181
+ A +E L K L G + + P D G FE H + A + A R+
Sbjct: 100 ANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGA--FEHFGHERYDAFFSLAHRL 157
Query: 182 LKSGSILTLTDLPLLSVSKNDNK-------FKEYVKKNIHSNFILVEHYP---------- 224
L + ++ L + L + + F ++K FI+ E +P
Sbjct: 158 LPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLK------FIVTEIFPGGRLPSIPMV 211
Query: 225 -DLLNKSGFELIKIDDITSH 243
+ + +GF + ++ + H
Sbjct: 212 QECASANGFTVTRVQSLQPH 231
>pdb|2P8J|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
pdb|2P8J|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
Length = 209
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 93 IDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF 152
+D G G L + + G + GI IS Q + A ++ K+N GD LPF
Sbjct: 28 LDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF--KLNISKGDIRKLPF 85
Query: 153 DNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTL 190
++S + + +IFH + A++E +RVLK G + +
Sbjct: 86 KDESXSFVYSYGTIFHXRKNDVKEAIDEIKRVLKPGGLACI 126
>pdb|3E7P|A Chain A, Crystal Structure Of Of Putative Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 270
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%)
Query: 85 SITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLH 144
++T D+GCG G + LA+ ++ GI E K A+ L ++V +
Sbjct: 44 NLTNKSLIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQNRVKGIV 103
Query: 145 GDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192
G +L F+ DS D W +I+++ L E R LK G L +++
Sbjct: 104 GSMDDLSFEKDSLDLIWSEGAIYNIGFERGLKEWRNYLKPGGYLAVSE 151
>pdb|3T7R|A Chain A, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7R|B Chain B, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|A Chain A, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|B Chain B, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|C Chain C, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|D Chain D, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|A Chain A, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|B Chain B, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|C Chain C, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|D Chain D, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
Length = 268
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%)
Query: 94 DIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD 153
D+GCG G + LA+ ++ GI E K A+ L ++V + G +L F+
Sbjct: 58 DLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQNRVKGIVGSMDDLSFE 117
Query: 154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192
DS D W +I+++ L E R LK G L +++
Sbjct: 118 KDSLDLIWSEGAIYNIGFERGLKEWRNYLKPGGYLAVSE 156
>pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From
Antibiotic Biosynthesis Pathway (Yp_324569.1) From
Anabaena Variabilis Atcc 29413 At 2.40 A Resolution
Length = 261
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAE 134
++ +IN ++ KG DIG G G + LA +G V + S ++ A+ + E
Sbjct: 21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN-QGLFVYAVEPSIVXRQQAVVHPQVE 79
Query: 135 GLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH-SAALNEARRVLKSGSILTLT 191
+ G A NL + S DG +I H +H + E +R+++ G+I+ LT
Sbjct: 80 -------WFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEXQRIIRDGTIVLLT 130
>pdb|1KPG|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
Length = 287
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 28/185 (15%)
Query: 79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMK-TAKAEGLL 137
+ + K + G +D+GCG+G + R + V G+T+SK Q + A +E L
Sbjct: 55 LALGKLGLQPGXTLLDVGCGWGATXXRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLR 114
Query: 138 DKVNFLHG-DALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLL 196
K L G + + P D G FE H + A + A R+L + + L + L
Sbjct: 115 SKRVLLAGWEQFDEPVDRIVSIGA--FEHFGHERYDAFFSLAHRLLPADGVXLLHTITGL 172
Query: 197 SVSKNDNK-------FKEYVKKNIHSNFILVEHYP-----------DLLNKSGFELIKID 238
+ + F ++K FI+ E +P + + +GF + ++
Sbjct: 173 HPKEIHERGLPXSFTFARFLK------FIVTEIFPGGRLPSIPXVQECASANGFTVTRVQ 226
Query: 239 DITSH 243
+ H
Sbjct: 227 SLQPH 231
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 13/147 (8%)
Query: 55 MHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRV 114
M YW++ + K+ S L I+ N + + +DIGCG G + LA +KG V
Sbjct: 1 MPESYWEKVSGKN--IPSSLDLYPIIHN--YLQEDDEILDIGCGSGKISLELA-SKGYSV 55
Query: 115 DGITISKFQQESAMKTAKAEGLLD----KVNFLHGDALNLPFDNDSFDGG---WFFESIF 167
GI I+ A A++ GL K F +A +L F + SFD F S+
Sbjct: 56 TGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVP 115
Query: 168 H-MNHSAALNEARRVLKSGSILTLTDL 193
S + E RVLK G+ L L +
Sbjct: 116 DPKERSRIIKEVFRVLKPGAYLYLVEF 142
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 79 IMINKTSITKGQRFIDIGCGFGLSGIRLAK-AKGCRVDGITISKFQQESAMKTAKAEGLL 137
+ I R +DIG G G + + + + C G+ +K E A A+ +G+
Sbjct: 12 LXIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECI--GVDATKEXVEVASSFAQEKGV- 68
Query: 138 DKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH-SAALNEARRVLKSGSILTLTD 192
+ V F G A +LPF +DSFD + H + A+ E RVLK L D
Sbjct: 69 ENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD 124
>pdb|1TPY|A Chain A, Structure Of The Cyclopropane Synthase Mmaa2 From
Mycobacterium Tuberculosis
Length = 287
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKT-AKAEGLL 137
+ + K + G +DIGCG+G + R V G+T+SK Q K+ + +
Sbjct: 55 LALGKLGLQPGMTLLDIGCGWGATMRRAIAQYDVNVVGLTLSKNQAAHVQKSFDEMDTPR 114
Query: 138 DKVNFLHG-DALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTL 190
D+ L G + N P D G FE H H+ A ++L +L L
Sbjct: 115 DRRVLLAGWEQFNEPVDRIVSIGA--FEHFGHDRHADFFARAHKILPPDGVLLL 166
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDK 139
+I + K + +D+GCG G+ + AK V G+ +S E A + + G DK
Sbjct: 30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSI-IEMAKELVELNGFSDK 88
Query: 140 VNFLHG--DALNLPF 152
+ L G + ++LPF
Sbjct: 89 ITLLRGKLEDVHLPF 103
>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
Length = 194
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 69 FAQGS-DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLA 107
F+ G DK ++I++ + K +D+GCG+G+ GI LA
Sbjct: 32 FSYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALA 71
>pdb|1NKV|A Chain A, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|B Chain B, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|C Chain C, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
Length = 256
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEG 135
L R++ K G R +D+G G G A+ G GI S A + A+ G
Sbjct: 28 LGRVLRXK----PGTRILDLGSGSGEXLCTWARDHGITGTGIDXSSLFTAQAKRRAEELG 83
Query: 136 LLDKVNFLHGDA 147
+ ++V+F+H DA
Sbjct: 84 VSERVHFIHNDA 95
>pdb|3TLJ|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosyl-L-Homocysteine
pdb|3TLJ|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosyl-L-Homocysteine
pdb|3TM4|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosylmethionine
pdb|3TM4|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosylmethionine
pdb|3TM5|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With Sinefungin
pdb|3TM5|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With Sinefungin
Length = 373
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 89 GQRFIDIGCGFGLSGIRLAKAKGCRVDG--ITISKFQQE--SAMKTAKAEGLLDKVNFLH 144
G +D CG G I LA R G I I K+++ A A A G+LDK+ F+
Sbjct: 218 GGSVLDPMCGSGTILIELALR---RYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQ 274
Query: 145 GDALNLPFDNDSFD 158
GDA L DS D
Sbjct: 275 GDATQLSQYVDSVD 288
>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
Length = 260
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 125 ESAMKTAKA--EGL-LDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARR 180
E +K A+A EG +V ++ GDA PF ++ F + H N ++ ++EA R
Sbjct: 69 EDILKVARAFIEGNGHQQVEYVQGDAEQXPFTDERFHIVTCRIAAHHFPNPASFVSEAYR 128
Query: 181 VLKSGSILTLTDLPLLSVSKND--NKFKEYVKKN---IHSNFILVEHYPDLLNKSGFEL 234
VLK G L L D S +ND + F YV+K H + L ++GFEL
Sbjct: 129 VLKKGGQLLLVD---NSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKXLEEAGFEL 184
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 5/133 (3%)
Query: 80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDK 139
M + + K + +D+G G G+ + AKA +V GI S + A+K KA L
Sbjct: 62 MFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHV 120
Query: 140 VNFLHG--DALNLPFDN-DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLL 196
V + G + + LP + D W +F+ + + AR + L D L
Sbjct: 121 VTIIKGKVEEVELPVEKVDIIISEWMGYCLFYQSMLNTVLHARDKWLAPDGLIFPDRATL 180
Query: 197 SVSK-NDNKFKEY 208
V+ D ++K+Y
Sbjct: 181 YVTAIEDRQYKDY 193
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
Length = 211
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 83 KTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNF 142
K + G+ +++G G G RL + V+ E+ + + + +
Sbjct: 31 KGLLPPGESLLEVGAGTGYWLRRLPYPQKVGVE-------PSEAXLAVGRRRA--PEATW 81
Query: 143 LHGDALNLPFDNDSFDGGWFFESI-FHMNHSAALNEARRVLKSGSILTLTDLPLLS 197
+ LPF +SFD F ++ F + L EARRVL+ G L + L LS
Sbjct: 82 VRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALS 137
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 16/160 (10%)
Query: 49 VLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAK 108
V F + H+G +E KD ++ + I K + +D+GCG G+ + AK
Sbjct: 28 VYFSSYGHYGIHEEM-LKDKIR--TESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAK 84
Query: 109 AKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG--DALNLPFDN-DSFDGGW---- 161
A +V G+ S+ + AM + L D + + G + ++LP + D W
Sbjct: 85 AGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYF 143
Query: 162 -FFESIFHMNHSAALNEARRVLKSGSILT-LTDLPLLSVS 199
FES M S + + + K GS+ + + L++VS
Sbjct: 144 LLFES---MLDSVLYAKNKYLAKGGSVYPDICTISLVAVS 180
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 5/133 (3%)
Query: 80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDK 139
M + + K + +D+G G G+ + AKA +V GI S + A+K KA L
Sbjct: 58 MFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHV 116
Query: 140 VNFLHG--DALNLPFDN-DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLL 196
V + G + + LP + D W +F+ + + AR + L D L
Sbjct: 117 VTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATL 176
Query: 197 SVSK-NDNKFKEY 208
V+ D ++K+Y
Sbjct: 177 YVTAIEDRQYKDY 189
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 89 GQRFIDIGCGFGLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA 147
G R +D+GCGFG R A G V G+ +S E + A+A G + + D
Sbjct: 44 GLRIVDLGCGFGWF-CRWAHEHGASYVLGLDLS----EKXLARARAAGPDTGITYERADL 98
Query: 148 LNLPFDNDSFD 158
L DSFD
Sbjct: 99 DKLHLPQDSFD 109
>pdb|1L1E|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
pdb|1L1E|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
Length = 287
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 76/200 (38%), Gaps = 28/200 (14%)
Query: 65 SKDNFAQGSDKLSRI--MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKF 122
+D+ ++++I + K ++ G +DIGCG+G + R + V G+T+S+
Sbjct: 39 ERDDMTLQEAQIAKIDLALGKLNLEPGMTLLDIGCGWGATMRRAIEKYDVNVVGLTLSEN 98
Query: 123 QQESA------MKTAKAEGLLDKVNFLHG-DALNLPFDNDSFDGGWFFESIFHMNHSAAL 175
Q M T ++ +L L G + + P D G FE H +
Sbjct: 99 QAGHVQKMFDQMDTPRSRRVL-----LEGWEKFDEPVDRIVSIGA--FEHFGHQRYHHFF 151
Query: 176 NEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIH-SNFILVEHYP---------- 224
R L + + L + + + K + +H + FIL E +P
Sbjct: 152 EVTHRTLPADGKMLLHTIVRPTFKEGREKGLTLTHELVHFTKFILAEIFPGGWLPSIPTV 211
Query: 225 -DLLNKSGFELIKIDDITSH 243
+ K GF + + + H
Sbjct: 212 HEYAEKVGFRVTAVQSLQLH 231
>pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis, Apo- Form
pdb|2FK8|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylmethionine
pdb|3HA3|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylhomocysteine
pdb|3HA5|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With Sinefungin
pdb|3HA7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With
S-Adenosyl-N-Decyl-Aminoethyl (Sadae)
Length = 318
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 81 INKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKV 140
++K + G +DIGCG+G + R + V G+T+SK Q A+ E +L +
Sbjct: 83 LDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQH------ARCEQVLASI 136
Query: 141 N 141
+
Sbjct: 137 D 137
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 5/133 (3%)
Query: 80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDK 139
M + + K + +D+G G G+ + AKA +V GI S + A+K KA L
Sbjct: 49 MFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHV 107
Query: 140 VNFLHG--DALNLPFDN-DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLL 196
V + G + + LP + D W +F+ + + AR + L D L
Sbjct: 108 VTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATL 167
Query: 197 SVSK-NDNKFKEY 208
V+ D ++K+Y
Sbjct: 168 YVTAIEDRQYKDY 180
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 5/133 (3%)
Query: 80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDK 139
M + + K + +D+G G G+ + AKA +V GI S + A+K KA L
Sbjct: 52 MFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHV 110
Query: 140 VNFLHG--DALNLPFDN-DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLL 196
V + G + + LP + D W +F+ + + AR + L D L
Sbjct: 111 VTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATL 170
Query: 197 SVSK-NDNKFKEY 208
V+ D ++K+Y
Sbjct: 171 YVTAIEDRQYKDY 183
>pdb|1JSX|A Chain A, Crystal Structure Of The Escherichia Coli
Glucose-Inhibited Division Protein B (Gidb)
Length = 207
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 60 WDESNSKDNFAQGSDKLSRIMINKTSIT---KGQRFIDIGCGFGLSGIRLAKAK 110
W+++ + + ++ L R +++ + +G+RFID+G G GL GI L+ +
Sbjct: 34 WNKAYNLTSVRDPNEMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVR 87
>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
pdb|2EIH|B Chain B, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
Length = 343
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 78 RIMINKTSITKGQRFIDIGCGFGLS--GIRLAKAKGCRVDGITISKFQQESAMKTAKAEG 135
+++++K + G + + G G+S I++AK G RV I+ E ++ AKA G
Sbjct: 156 QMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARV----IATAGSEDKLRRAKALG 211
Query: 136 LLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAAL 175
+ VN+ H D P + GG + + ++H+ AL
Sbjct: 212 ADETVNYTHPD---WPKEVRRLTGGKGADKV--VDHTGAL 246
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 19/168 (11%)
Query: 49 VLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAK 108
V F + H+G +E KD S + + I K + +D+GCG G+ + AK
Sbjct: 9 VYFSSYGHYGIHEEM-LKDKVRTESYR--DFIYQNPHIFKDKVVLDVGCGTGILSMFAAK 65
Query: 109 AKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG--DALNLPFDN-DSFDGGW---- 161
A +V + S+ + AM + L D + + G + ++LP + D W
Sbjct: 66 AGAKKVIAVDQSEILYQ-AMDIIRLNKLEDTIVLIKGKIEEVSLPVEKVDVIISEWMGYF 124
Query: 162 -FFESIFHMNHSAALNEARRVLKSGS----ILTLTDLPLLSVSKNDNK 204
FES M S +++ + K GS I T++ + + VSK+ ++
Sbjct: 125 LLFES---MLDSVLYAKSKYLAKGGSVYPDICTISLVAVSDVSKHADR 169
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|1J3U|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|3R6Q|A Chain A, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|B Chain B, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|C Chain C, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|D Chain D, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|E Chain E, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|F Chain F, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|G Chain G, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|H Chain H, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6V|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|C Chain C, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|D Chain D, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|E Chain E, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|F Chain F, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|G Chain G, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|H Chain H, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
Length = 468
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 22/158 (13%)
Query: 61 DESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITIS 120
D + + D + + S L MIN + I R + G GLS I L R G +I
Sbjct: 266 DATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLP----ARQPGSSIM 321
Query: 121 KFQQESAMKTAKAEGLLDKVNF-LHGDALNLPFDNDSFDGGWF----FESIFHMNHSAAL 175
+ M ++++V F + G+ L + + + G F E + N ++
Sbjct: 322 PGKVNPVMPE-----VMNQVAFQVFGNDLTI---TSASEAGQFELNVMEPVLFFNLIQSI 373
Query: 176 NEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNI 213
+ V KS T+ L + N+ + KEYV+K+I
Sbjct: 374 SIMTNVFKS-----FTENCLKGIKANEERMKEYVEKSI 406
>pdb|4HTF|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 285
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 91 RFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL 150
R +D G G G + I+ A+ +G +V +S + A + A+A+G+ D F+H A ++
Sbjct: 71 RVLDAGGGEGQTAIKXAE-RGHQVILCDLSAQXIDRAKQAAEAKGVSDNXQFIHCAAQDV 129
Query: 151 PFDNDSFDGGWFFESIFH--MNHSAALNEARRVLKSGSILTL 190
++ F ++ + + L VL+ G +L+L
Sbjct: 130 ASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSL 171
>pdb|4HTF|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 285
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 91 RFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL 150
R +D G G G + I+ A+ +G +V +S + A + A+A+G+ D F+H A ++
Sbjct: 71 RVLDAGGGEGQTAIKXAE-RGHQVILCDLSAQXIDRAKQAAEAKGVSDNXQFIHCAAQDV 129
Query: 151 PFDNDSFDGGWFFESIFH--MNHSAALNEARRVLKSGSILTL 190
++ F ++ + + L VL+ G +L+L
Sbjct: 130 ASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSL 171
>pdb|3SR4|A Chain A, Crystal Structure Of Human Dot1l In Complex With A
Selective Inhibitor
Length = 351
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 62 ESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCR 113
E S + + + S L MI++ +T F+D+G G G +++A A C+
Sbjct: 129 EPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCK 180
>pdb|4ER3|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Epz004777
Length = 352
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 62 ESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCR 113
E S + + + S L MI++ +T F+D+G G G +++A A C+
Sbjct: 130 EPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCK 181
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 70/161 (43%), Gaps = 7/161 (4%)
Query: 57 WGYW-DESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVD 115
+GY + N ++ + I+ N T K + +D+GCG G+ A+A ++
Sbjct: 10 YGYLSQQQNMMQDYVRTGTYQRAILQNHTDF-KDKIVLDVGCGSGILSFFAAQAGARKIY 68
Query: 116 GITISKFQQESAMKTAKAEGLLDKVNFLHG--DALNLPFDNDSFDGGWFFESIFHMNHSA 173
+ S Q + + K+ L D++ + G + ++LP D +F+
Sbjct: 69 AVEASTMAQHAEV-LVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLE 127
Query: 174 ALNEARRVLK-SGSIL-TLTDLPLLSVSKNDNKFKEYVKKN 212
+ A++ LK SG++ T+ D+ L + +++ K N
Sbjct: 128 SYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKAN 168
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 70/161 (43%), Gaps = 7/161 (4%)
Query: 57 WGYW-DESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVD 115
+GY + N ++ + I+ N T K + +D+GCG G+ A+A ++
Sbjct: 14 YGYLSQQQNMMQDYVRTGTYQRAILQNHTDF-KDKIVLDVGCGSGILSFFAAQAGARKIY 72
Query: 116 GITISKFQQESAMKTAKAEGLLDKVNFLHG--DALNLPFDNDSFDGGWFFESIFHMNHSA 173
+ S Q + + K+ L D++ + G + ++LP D +F+
Sbjct: 73 AVEASTMAQHAEV-LVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLE 131
Query: 174 ALNEARRVLK-SGSIL-TLTDLPLLSVSKNDNKFKEYVKKN 212
+ A++ LK SG++ T+ D+ L + +++ K N
Sbjct: 132 SYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKAN 172
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 70/161 (43%), Gaps = 7/161 (4%)
Query: 57 WGYW-DESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVD 115
+GY + N ++ + I+ N T K + +D+GCG G+ A+A ++
Sbjct: 15 YGYLSQQQNMMQDYVRTGTYQRAILQNHTDF-KDKIVLDVGCGSGILSFFAAQAGARKIY 73
Query: 116 GITISKFQQESAMKTAKAEGLLDKVNFLHG--DALNLPFDNDSFDGGWFFESIFHMNHSA 173
+ S Q + + K+ L D++ + G + ++LP D +F+
Sbjct: 74 AVEASTMAQHAEV-LVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLE 132
Query: 174 ALNEARRVLK-SGSIL-TLTDLPLLSVSKNDNKFKEYVKKN 212
+ A++ LK SG++ T+ D+ L + +++ K N
Sbjct: 133 SYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKAN 173
>pdb|4ER5|A Chain A, Crystal Structure Of Human Dot1l In Complex With 2
Molecules Of Epz004777
pdb|4ER6|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Sgc0946
Length = 413
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 62 ESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCR 113
E S + + + S L MI++ +T F+D+G G G +++A A C+
Sbjct: 130 EPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCK 181
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 70/161 (43%), Gaps = 7/161 (4%)
Query: 57 WGYW-DESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVD 115
+GY + N ++ + I+ N T K + +D+GCG G+ A+A ++
Sbjct: 19 YGYLSQQQNMMQDYVRTGTYQRAILQNHTDF-KDKIVLDVGCGSGILSFFAAQAGARKIY 77
Query: 116 GITISKFQQESAMKTAKAEGLLDKVNFLHG--DALNLPFDNDSFDGGWFFESIFHMNHSA 173
+ S Q + + K+ L D++ + G + ++LP D +F+
Sbjct: 78 AVEASTMAQHAEV-LVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLE 136
Query: 174 ALNEARRVLK-SGSIL-TLTDLPLLSVSKNDNKFKEYVKKN 212
+ A++ LK SG++ T+ D+ L + +++ K N
Sbjct: 137 SYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKAN 177
>pdb|1NW3|A Chain A, Structure Of The Catalytic Domain Of Human Dot1l, A
Non-Set Domain Nucleosomal Histone Methyltransferase
Length = 416
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 62 ESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCR 113
E S + + + S L MI++ +T F+D+G G G +++A A C+
Sbjct: 129 EPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCK 180
>pdb|3SX0|A Chain A, Crystal Structure Of Dot1l In Complex With A Brominated
Sah Analog
pdb|4EQZ|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Fed2
pdb|4ER0|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Fed1
pdb|4ER7|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Sgc0947
Length = 421
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 62 ESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCR 113
E S + + + S L MI++ +T F+D+G G G +++A A C+
Sbjct: 130 EPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCK 181
>pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa2 Complexed With Sah And Dddmab
pdb|3HEM|A Chain A, Structure Of Mycobacterium Tuberculosis Mycolic Acid
Cyclopropane Synthase Cmaa2 In Complex With Dioctylamine
Length = 302
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 78 RIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQ 123
++ ++K ++ G +DIGCG+G S +R A A+ V G+T+S+ Q
Sbjct: 62 KLALDKLNLEPGMTLLDIGCGWG-STMRHAVAEYDVNVIGLTLSENQ 107
>pdb|3QOW|A Chain A, Dot1l Structure In Complex With Sam
pdb|3QOX|A Chain A, Dot1l Structure In Complex With Sah
Length = 426
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 62 ESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCR 113
E S + + + S L MI++ +T F+D+G G G +++A A C+
Sbjct: 139 EPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCK 190
>pdb|3UWP|A Chain A, Crystal Structure Of Dot1l In Complex With
5-Iodotubercidin
Length = 438
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 62 ESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCR 113
E S + + + S L MI++ +T F+D+G G G +++A A C+
Sbjct: 147 EPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCK 198
>pdb|4EK9|A Chain A, Crystal Structure Of Dot1l In Complex With Epz000004
pdb|4EKG|A Chain A, Crystal Structure Of Dot1l In Complex With Epz003696
pdb|4EKI|A Chain A, Crystal Structure Of Dot1l In Complex With Epz004777
Length = 425
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 62 ESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCR 113
E S + + + S L MI++ +T F+D+G G G +++A A C+
Sbjct: 138 EPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCK 189
>pdb|4DQ0|A Chain A, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|B Chain B, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|C Chain C, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|D Chain D, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
Length = 200
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL--L 137
++ + K + +D+GCG G + + LA A G VD ++AM A E + +
Sbjct: 25 VLEAVKVVKPGKTLDLGCGNGRNSLYLA-ANGYDVDA------WDKNAMSIANVERIKSI 77
Query: 138 DKVNFLHGDALNLPFDNDSFDGGWFF 163
+ ++ LH ++L +N +FDG + F
Sbjct: 78 ENLDNLHTRVVDL--NNLTFDGEYDF 101
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 70/161 (43%), Gaps = 7/161 (4%)
Query: 57 WGYW-DESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVD 115
+GY + N ++ + I+ N T K + +D+GCG G+ A+A ++
Sbjct: 127 YGYLSQQQNMMQDYVRTGTYQRAILQNHTDF-KDKIVLDVGCGSGILSFFAAQAGARKIY 185
Query: 116 GITISKFQQESAMKTAKAEGLLDKVNFLHG--DALNLPFDNDSFDGGWFFESIFHMNHSA 173
+ S Q + + K+ L D++ + G + ++LP D +F+
Sbjct: 186 AVEASTMAQHAEV-LVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLE 244
Query: 174 ALNEARRVLK-SGSIL-TLTDLPLLSVSKNDNKFKEYVKKN 212
+ A++ LK SG++ T+ D+ L + +++ K N
Sbjct: 245 SYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKAN 285
>pdb|2YXD|A Chain A, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
pdb|2YXD|B Chain B, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
Length = 183
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 16/83 (19%)
Query: 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCR-------VDGI------TIS 120
+++ + I K ++ K +D+GCG G G + AK C+ +DG ++
Sbjct: 21 EEIRAVSIGKLNLNKDDVVVDVGCGSG--GXTVEIAKRCKFVYAIDYLDGAIEVTKQNLA 78
Query: 121 KFQ-QESAMKTAKAEGLLDKVNF 142
KF + + +AE +LDK+ F
Sbjct: 79 KFNIKNCQIIKGRAEDVLDKLEF 101
>pdb|2VS1|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 80 MINKTS-ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAK 132
++ K S + +G++ +D+ G G GI LAK +G V G ++F E A + +
Sbjct: 281 LVRKVSELVEGEKILDMYSGVGTFGIYLAK-RGFNVKGFDSNEFAIEMARRNVE 333
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,920,631
Number of Sequences: 62578
Number of extensions: 320391
Number of successful extensions: 951
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 906
Number of HSP's gapped (non-prelim): 72
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)