Query psy2408 Match_columns 298 No_of_seqs 235 out of 3444 Neff 10.2 Searched_HMMs 46136 Date Sat Aug 17 00:12:38 2013 Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2408.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2408hhsearch_cdd -cpu 12 -v 0 No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PF02353 CMAS: Mycolic acid cy 100.0 1.3E-36 2.9E-41 252.8 17.9 250 28-288 3-263 (273) 2 COG2230 Cfa Cyclopropane fatty 100.0 2.3E-34 5E-39 235.2 25.0 253 25-288 10-269 (283) 3 PLN02244 tocopherol O-methyltr 100.0 5.1E-34 1.1E-38 246.4 27.9 267 26-298 52-339 (340) 4 PRK11705 cyclopropane fatty ac 100.0 2.9E-30 6.2E-35 225.4 23.8 258 25-298 106-373 (383) 5 PTZ00098 phosphoethanolamine N 100.0 1.6E-29 3.5E-34 211.0 23.7 243 38-298 15-263 (263) 6 COG2226 UbiE Methylase involve 100.0 1.8E-28 3.9E-33 197.4 18.6 199 31-245 9-230 (238) 7 PF01209 Ubie_methyltran: ubiE 100.0 9.9E-29 2.1E-33 201.4 11.1 198 32-246 6-227 (233) 8 PLN02336 phosphoethanolamine N 100.0 1E-26 2.2E-31 211.0 24.9 216 77-297 255-474 (475) 9 PLN02233 ubiquinone biosynthes 99.9 4.6E-26 9.9E-31 190.0 19.6 198 31-244 31-253 (261) 10 smart00828 PKS_MT Methyltransf 99.9 4.2E-25 9.1E-30 181.2 17.6 196 90-298 1-203 (224) 11 TIGR02752 MenG_heptapren 2-hep 99.9 8E-24 1.7E-28 174.5 17.5 198 32-245 4-224 (231) 12 PRK11036 putative S-adenosyl-L 99.9 3E-24 6.6E-29 179.2 13.8 161 77-240 34-208 (255) 13 KOG1540|consensus 99.9 6.5E-24 1.4E-28 167.7 14.1 196 34-245 61-288 (296) 14 PLN02396 hexaprenyldihydroxybe 99.9 5.3E-23 1.2E-27 174.8 15.7 157 87-244 130-294 (322) 15 PRK14103 trans-aconitate 2-met 99.9 1.5E-21 3.2E-26 163.1 21.6 154 75-238 16-183 (255) 16 PRK08317 hypothetical protein; 99.9 1.6E-20 3.5E-25 155.7 25.7 167 74-242 5-179 (241) 17 PRK10258 biotin biosynthesis p 99.9 6.4E-22 1.4E-26 165.0 16.4 184 31-242 5-189 (251) 18 PRK15068 tRNA mo(5)U34 methylt 99.9 2.4E-21 5.3E-26 165.8 18.5 166 77-243 111-278 (322) 19 COG2227 UbiG 2-polyprenyl-3-me 99.9 9.9E-23 2.2E-27 161.2 7.5 153 87-245 58-221 (243) 20 TIGR00452 methyltransferase, p 99.9 7.9E-21 1.7E-25 160.9 18.7 169 74-243 107-277 (314) 21 PRK00216 ubiE ubiquinone/menaq 99.9 1.1E-20 2.3E-25 156.7 18.1 200 30-245 8-231 (239) 22 PLN02490 MPBQ/MSBQ methyltrans 99.9 1E-20 2.2E-25 161.4 17.9 160 75-244 99-261 (340) 23 PRK11873 arsM arsenite S-adeno 99.9 4.2E-20 9.1E-25 155.9 19.4 153 84-239 73-230 (272) 24 PF13489 Methyltransf_23: Meth 99.9 2.3E-21 5E-26 150.8 8.6 137 86-236 20-160 (161) 25 PRK05785 hypothetical protein; 99.9 2.8E-20 6.1E-25 151.8 15.3 189 31-245 7-217 (226) 26 PRK15451 tRNA cmo(5)U34 methyl 99.8 7.8E-20 1.7E-24 151.7 17.9 108 87-196 55-168 (247) 27 PRK11207 tellurite resistance 99.8 6.3E-20 1.4E-24 146.9 16.8 147 79-239 21-170 (197) 28 PRK01683 trans-aconitate 2-met 99.8 3.5E-19 7.6E-24 149.2 22.0 157 72-236 15-184 (258) 29 PF13847 Methyltransf_31: Meth 99.8 1.8E-20 3.8E-25 144.3 12.1 141 87-231 2-152 (152) 30 TIGR01934 MenG_MenH_UbiE ubiqu 99.8 7.8E-20 1.7E-24 149.9 16.6 167 75-244 26-215 (223) 31 KOG1270|consensus 99.8 4.7E-21 1E-25 152.6 8.3 151 89-243 90-253 (282) 32 TIGR00740 methyltransferase, p 99.8 9.7E-20 2.1E-24 150.7 16.3 147 87-235 52-223 (239) 33 PF08241 Methyltransf_11: Meth 99.8 2E-20 4.4E-25 132.1 10.5 94 93-190 1-95 (95) 34 TIGR02021 BchM-ChlM magnesium 99.8 8.1E-20 1.8E-24 149.2 14.2 167 71-246 36-213 (219) 35 TIGR00477 tehB tellurite resis 99.8 3.2E-19 7E-24 142.6 16.3 147 79-240 21-170 (195) 36 KOG4300|consensus 99.8 1.5E-19 3.3E-24 138.5 13.0 166 76-243 64-236 (252) 37 PF12847 Methyltransf_18: Meth 99.8 2.7E-19 5.9E-24 130.4 13.3 104 88-192 1-111 (112) 38 TIGR02072 BioC biotin biosynth 99.8 2.8E-18 6.2E-23 142.2 21.0 157 72-239 15-176 (240) 39 TIGR02716 C20_methyl_CrtF C-20 99.8 1.6E-18 3.4E-23 148.6 18.9 159 76-237 137-304 (306) 40 PLN02585 magnesium protoporphy 99.8 1.2E-18 2.6E-23 147.9 16.1 204 23-243 81-303 (315) 41 PRK07580 Mg-protoporphyrin IX 99.8 1.3E-18 2.7E-23 143.4 14.3 200 30-244 8-219 (230) 42 PF03848 TehB: Tellurite resis 99.8 5.7E-18 1.2E-22 132.5 15.2 144 81-239 23-169 (192) 43 PF08003 Methyltransf_9: Prote 99.8 3.8E-18 8.2E-23 140.1 14.4 167 77-245 104-273 (315) 44 PRK12335 tellurite resistance 99.8 6.4E-18 1.4E-22 143.3 16.3 137 88-239 120-259 (287) 45 PRK05134 bifunctional 3-demeth 99.8 1.2E-17 2.5E-22 137.9 17.0 162 77-241 37-207 (233) 46 PRK00107 gidB 16S rRNA methylt 99.8 9.4E-18 2E-22 132.2 15.4 126 86-240 43-170 (187) 47 PF07021 MetW: Methionine bios 99.8 1.3E-17 2.9E-22 128.5 12.7 153 79-244 6-172 (193) 48 COG4106 Tam Trans-aconitate me 99.8 1.5E-17 3.2E-22 128.7 12.9 157 76-240 18-187 (257) 49 TIGR01983 UbiG ubiquinone bios 99.7 6.1E-17 1.3E-21 132.8 16.2 148 88-241 45-205 (224) 50 PF13649 Methyltransf_25: Meth 99.7 6.9E-18 1.5E-22 120.5 7.5 93 92-186 1-101 (101) 51 KOG1271|consensus 99.7 5E-17 1.1E-21 122.3 12.0 145 71-238 46-204 (227) 52 PRK06202 hypothetical protein; 99.7 5.6E-17 1.2E-21 133.6 13.3 147 87-242 59-225 (232) 53 TIGR03840 TMPT_Se_Te thiopurin 99.7 3.9E-16 8.5E-21 125.8 17.7 149 80-241 26-189 (213) 54 PLN02336 phosphoethanolamine N 99.7 6E-17 1.3E-21 147.2 14.4 149 77-236 26-179 (475) 55 TIGR00138 gidB 16S rRNA methyl 99.7 3.1E-16 6.8E-21 123.4 16.2 127 88-243 42-173 (181) 56 PRK13944 protein-L-isoaspartat 99.7 2.1E-16 4.5E-21 127.4 14.6 114 74-192 58-173 (205) 57 TIGR02081 metW methionine bios 99.7 2.3E-16 5E-21 126.3 14.0 148 79-242 6-170 (194) 58 TIGR03587 Pse_Me-ase pseudamin 99.7 3.3E-16 7E-21 125.7 14.6 113 72-195 29-145 (204) 59 smart00138 MeTrc Methyltransfe 99.7 1.5E-16 3.2E-21 132.8 12.8 127 66-192 77-242 (264) 60 PRK08287 cobalt-precorrin-6Y C 99.7 9.6E-16 2.1E-20 122.0 16.6 141 73-241 16-158 (187) 61 PRK13255 thiopurine S-methyltr 99.7 1.7E-15 3.7E-20 122.6 17.5 145 81-241 30-192 (218) 62 PLN02232 ubiquinone biosynthes 99.7 2.7E-16 5.9E-21 121.6 12.3 130 115-245 1-153 (160) 63 COG4976 Predicted methyltransf 99.7 5.8E-18 1.3E-22 131.9 2.5 190 23-241 74-267 (287) 64 PRK04266 fibrillarin; Provisio 99.7 1.6E-15 3.4E-20 123.2 16.7 142 82-243 66-214 (226) 65 TIGR02469 CbiT precorrin-6Y C5 99.7 1.4E-15 3E-20 112.8 14.4 114 75-192 6-122 (124) 66 TIGR00537 hemK_rel_arch HemK-r 99.7 2.4E-15 5.2E-20 118.9 16.5 129 86-241 17-167 (179) 67 PRK00377 cbiT cobalt-precorrin 99.7 2.5E-15 5.5E-20 120.6 16.2 136 74-234 26-165 (198) 68 PRK06922 hypothetical protein; 99.7 7.4E-16 1.6E-20 139.5 14.0 108 87-196 417-541 (677) 69 PF08242 Methyltransf_12: Meth 99.7 9.3E-18 2E-22 119.5 1.4 95 93-188 1-99 (99) 70 TIGR01177 conserved hypothetic 99.7 1.7E-15 3.8E-20 130.8 15.7 139 74-240 168-316 (329) 71 PRK14967 putative methyltransf 99.7 1.6E-14 3.6E-19 118.1 20.4 140 77-241 25-186 (223) 72 PRK13942 protein-L-isoaspartat 99.7 1.9E-15 4.1E-20 122.3 14.3 114 73-192 61-176 (212) 73 PRK11088 rrmA 23S rRNA methylt 99.7 3.5E-15 7.6E-20 125.7 15.8 110 73-195 71-184 (272) 74 PF05401 NodS: Nodulation prot 99.7 8.3E-16 1.8E-20 118.8 10.7 135 83-236 38-176 (201) 75 TIGR00080 pimt protein-L-isoas 99.7 4.3E-15 9.3E-20 120.8 14.7 112 74-191 63-176 (215) 76 PRK00121 trmB tRNA (guanine-N( 99.6 1.8E-15 3.9E-20 121.6 12.1 125 88-235 40-177 (202) 77 PLN03075 nicotianamine synthas 99.6 2.9E-15 6.3E-20 124.7 13.6 105 87-192 122-233 (296) 78 PRK14968 putative methyltransf 99.6 9.8E-15 2.1E-19 116.4 16.2 136 80-239 15-173 (188) 79 PF05175 MTS: Methyltransferas 99.6 1.3E-14 2.9E-19 113.4 16.0 119 69-193 16-141 (170) 80 PRK00517 prmA ribosomal protei 99.6 5.4E-15 1.2E-19 122.9 14.2 120 87-240 118-239 (250) 81 PF05891 Methyltransf_PK: AdoM 99.6 1.7E-15 3.8E-20 119.1 9.9 187 32-239 6-201 (218) 82 TIGR03438 probable methyltrans 99.6 2.4E-15 5.2E-20 128.2 11.6 148 36-192 20-177 (301) 83 PTZ00146 fibrillarin; Provisio 99.6 2E-14 4.3E-19 119.2 16.2 150 74-242 115-274 (293) 84 TIGR00406 prmA ribosomal prote 99.6 1.2E-14 2.5E-19 123.3 14.4 136 75-239 147-283 (288) 85 KOG2361|consensus 99.6 6.9E-16 1.5E-20 121.6 5.9 146 91-238 74-236 (264) 86 PRK15001 SAM-dependent 23S rib 99.6 2E-14 4.4E-19 124.6 15.1 117 75-192 215-340 (378) 87 KOG1541|consensus 99.6 9.5E-15 2.1E-19 113.5 10.7 117 71-194 31-162 (270) 88 TIGR00091 tRNA (guanine-N(7)-) 99.6 1.3E-14 2.8E-19 116.0 11.3 106 88-194 16-134 (194) 89 COG2518 Pcm Protein-L-isoaspar 99.6 4.4E-14 9.5E-19 110.8 13.7 114 73-193 57-170 (209) 90 TIGR03534 RF_mod_PrmC protein- 99.6 9.4E-14 2E-18 115.9 16.4 140 73-238 73-240 (251) 91 COG2264 PrmA Ribosomal protein 99.6 5.1E-14 1.1E-18 116.9 14.2 137 75-240 150-289 (300) 92 TIGR03533 L3_gln_methyl protei 99.6 1.7E-13 3.6E-18 115.7 17.5 104 87-191 120-250 (284) 93 COG2242 CobL Precorrin-6B meth 99.6 2.1E-13 4.7E-18 104.6 16.1 140 72-238 18-160 (187) 94 COG4123 Predicted O-methyltran 99.6 2.8E-14 6.1E-19 115.3 11.9 142 80-244 36-199 (248) 95 PRK00312 pcm protein-L-isoaspa 99.6 1.1E-13 2.4E-18 112.4 14.8 113 74-193 64-176 (212) 96 PRK07402 precorrin-6B methylas 99.6 1.2E-13 2.7E-18 110.7 14.8 118 72-194 24-144 (196) 97 PF13659 Methyltransf_26: Meth 99.6 1.3E-14 2.8E-19 106.5 8.0 105 89-193 1-116 (117) 98 COG2519 GCD14 tRNA(1-methylade 99.6 1.1E-13 2.5E-18 110.8 13.4 112 77-194 83-197 (256) 99 PRK14121 tRNA (guanine-N(7)-)- 99.6 9.6E-14 2.1E-18 119.9 13.9 115 79-194 113-237 (390) 100 TIGR00536 hemK_fam HemK family 99.5 3.5E-13 7.7E-18 114.1 16.9 119 73-192 98-244 (284) 101 PF00891 Methyltransf_2: O-met 99.5 2.6E-13 5.7E-18 112.4 15.5 140 78-228 90-241 (241) 102 PF08704 GCD14: tRNA methyltra 99.5 1.2E-13 2.6E-18 112.8 12.8 139 75-240 27-172 (247) 103 PRK09489 rsmC 16S ribosomal RN 99.5 1.7E-13 3.6E-18 118.3 14.3 114 77-194 185-305 (342) 104 PHA03411 putative methyltransf 99.5 5.3E-13 1.2E-17 109.6 16.0 126 87-235 63-210 (279) 105 PRK09328 N5-glutamine S-adenos 99.5 6.1E-13 1.3E-17 112.6 16.9 139 74-237 94-260 (275) 106 PRK13256 thiopurine S-methyltr 99.5 8.4E-13 1.8E-17 106.4 16.5 143 82-238 37-196 (226) 107 PF06080 DUF938: Protein of un 99.5 4.5E-13 9.7E-18 105.1 14.5 167 76-243 14-196 (204) 108 PF01135 PCMT: Protein-L-isoas 99.5 1E-13 2.2E-18 111.1 11.0 116 72-193 56-173 (209) 109 PRK14966 unknown domain/N5-glu 99.5 6.1E-13 1.3E-17 115.6 16.2 139 72-237 237-403 (423) 110 PF06325 PrmA: Ribosomal prote 99.5 2.6E-13 5.6E-18 113.9 13.4 133 75-240 149-284 (295) 111 PRK13943 protein-L-isoaspartat 99.5 4.7E-13 1E-17 114.1 14.1 113 74-192 66-180 (322) 112 TIGR00563 rsmB ribosomal RNA s 99.5 5.4E-13 1.2E-17 119.3 15.2 125 74-198 224-374 (426) 113 PRK14901 16S rRNA methyltransf 99.5 5.1E-13 1.1E-17 119.6 15.0 122 74-196 238-388 (434) 114 PRK11805 N5-glutamine S-adenos 99.5 1.4E-12 3.1E-17 111.1 16.9 102 89-191 134-262 (307) 115 PRK11188 rrmJ 23S rRNA methylt 99.5 5.1E-13 1.1E-17 107.7 12.6 103 80-194 42-167 (209) 116 PF05724 TPMT: Thiopurine S-me 99.5 4E-13 8.6E-18 108.6 11.4 145 82-239 31-190 (218) 117 PRK01544 bifunctional N5-gluta 99.5 1.7E-12 3.7E-17 117.8 16.1 103 88-191 138-268 (506) 118 PRK10901 16S rRNA methyltransf 99.5 2.2E-12 4.7E-17 115.4 16.4 122 74-197 230-377 (427) 119 KOG1269|consensus 99.5 2.2E-13 4.7E-18 117.3 9.1 187 6-196 32-219 (364) 120 PRK14904 16S rRNA methyltransf 99.5 1.1E-12 2.4E-17 117.8 13.4 117 79-197 241-382 (445) 121 smart00650 rADc Ribosomal RNA 99.4 8.5E-13 1.8E-17 103.2 10.8 109 77-191 2-112 (169) 122 COG2813 RsmC 16S RNA G1207 met 99.4 2.3E-12 4.9E-17 106.5 13.7 117 74-193 144-267 (300) 123 PRK14902 16S rRNA methyltransf 99.4 1.9E-12 4E-17 116.5 14.0 120 74-195 236-382 (444) 124 TIGR00446 nop2p NOL1/NOP2/sun 99.4 1.1E-12 2.3E-17 109.9 11.6 114 82-196 65-203 (264) 125 PF05148 Methyltransf_8: Hypot 99.4 1.8E-12 3.8E-17 101.1 11.7 127 78-242 61-188 (219) 126 PRK14903 16S rRNA methyltransf 99.4 3.1E-12 6.8E-17 114.1 14.8 121 76-197 225-371 (431) 127 PF03291 Pox_MCEL: mRNA cappin 99.4 1.1E-12 2.3E-17 112.3 11.0 107 88-194 62-188 (331) 128 KOG3010|consensus 99.4 1.9E-12 4.2E-17 102.4 11.2 103 91-194 36-139 (261) 129 cd02440 AdoMet_MTases S-adenos 99.4 2.9E-12 6.3E-17 91.3 11.3 100 91-191 1-103 (107) 130 PRK04457 spermidine synthase; 99.4 3.3E-12 7.1E-17 106.6 11.8 108 87-194 65-179 (262) 131 TIGR03704 PrmC_rel_meth putati 99.4 2.1E-11 4.6E-16 101.1 16.5 139 73-238 70-239 (251) 132 COG2890 HemK Methylase of poly 99.4 1.7E-11 3.8E-16 102.9 15.8 136 74-236 97-260 (280) 133 PLN02781 Probable caffeoyl-CoA 99.4 6.7E-12 1.5E-16 103.0 12.6 118 73-197 56-183 (234) 134 PRK11783 rlmL 23S rRNA m(2)G24 99.4 1.3E-11 2.8E-16 116.7 15.0 130 88-241 538-682 (702) 135 TIGR00438 rrmJ cell division p 99.4 9.6E-12 2.1E-16 99.0 11.9 103 78-192 22-146 (188) 136 PF12147 Methyltransf_20: Puta 99.4 8.3E-11 1.8E-15 96.1 16.6 147 87-236 134-295 (311) 137 PRK13168 rumA 23S rRNA m(5)U19 99.3 3.1E-11 6.8E-16 108.5 15.5 145 72-244 281-429 (443) 138 KOG1975|consensus 99.3 4.3E-12 9.2E-17 104.3 8.6 118 77-194 106-239 (389) 139 PF05219 DREV: DREV methyltran 99.3 1.6E-11 3.4E-16 99.1 11.2 146 88-244 94-245 (265) 140 COG1041 Predicted DNA modifica 99.3 3.1E-11 6.6E-16 101.7 13.4 118 74-193 183-311 (347) 141 PRK00811 spermidine synthase; 99.3 1.1E-11 2.4E-16 104.6 10.9 106 87-192 75-191 (283) 142 COG4122 Predicted O-methyltran 99.3 2.7E-11 5.8E-16 96.7 12.2 117 74-197 48-171 (219) 143 KOG3045|consensus 99.3 1.6E-11 3.5E-16 97.9 10.1 119 80-239 171-291 (325) 144 KOG2899|consensus 99.3 3E-11 6.4E-16 95.6 10.9 150 87-239 57-255 (288) 145 PF01596 Methyltransf_3: O-met 99.3 2.8E-11 6E-16 96.7 10.6 121 70-197 30-160 (205) 146 PRK03612 spermidine synthase; 99.3 2.4E-11 5.3E-16 111.0 11.6 106 87-192 296-415 (521) 147 PRK03522 rumB 23S rRNA methylu 99.3 4.8E-11 1E-15 102.6 12.5 117 74-194 159-276 (315) 148 PRK10909 rsmD 16S rRNA m(2)G96 99.3 8.6E-11 1.9E-15 93.6 12.8 124 69-194 33-161 (199) 149 PRK15128 23S rRNA m(5)C1962 me 99.3 4.2E-11 9E-16 105.3 12.0 108 87-194 219-341 (396) 150 PLN02476 O-methyltransferase 99.3 8.8E-11 1.9E-15 97.5 13.0 121 71-198 104-234 (278) 151 PRK01581 speE spermidine synth 99.3 2.3E-10 5E-15 97.7 15.6 106 87-192 149-268 (374) 152 PF01739 CheR: CheR methyltran 99.3 1.1E-10 2.5E-15 92.5 12.2 121 72-192 15-175 (196) 153 PLN02366 spermidine synthase 99.3 7.3E-11 1.6E-15 100.2 11.8 107 87-193 90-207 (308) 154 KOG2940|consensus 99.3 2.3E-11 4.9E-16 95.4 7.9 170 72-246 58-236 (325) 155 TIGR00479 rumA 23S rRNA (uraci 99.2 2E-10 4.3E-15 103.2 14.5 144 72-243 276-424 (431) 156 PF02390 Methyltransf_4: Putat 99.2 9.7E-11 2.1E-15 93.2 10.4 101 91-192 20-133 (195) 157 PF10294 Methyltransf_16: Puta 99.2 1.4E-10 3E-15 90.8 11.0 122 72-194 23-158 (173) 158 COG2263 Predicted RNA methylas 99.2 1.2E-09 2.6E-14 83.8 15.1 130 85-246 42-175 (198) 159 PF01170 UPF0020: Putative RNA 99.2 5.1E-10 1.1E-14 88.0 13.5 117 74-190 14-149 (179) 160 TIGR00417 speE spermidine synt 99.2 2E-10 4.4E-15 96.5 11.8 104 88-191 72-185 (270) 161 PHA03412 putative methyltransf 99.2 6.8E-10 1.5E-14 89.3 13.8 93 88-187 49-158 (241) 162 PLN02672 methionine S-methyltr 99.2 5.9E-10 1.3E-14 107.8 15.8 128 89-239 119-303 (1082) 163 KOG1499|consensus 99.2 1.8E-10 3.9E-15 96.6 10.1 111 79-190 51-165 (346) 164 PTZ00338 dimethyladenosine tra 99.2 3.5E-10 7.7E-15 95.6 11.7 95 74-172 22-116 (294) 165 KOG2904|consensus 99.2 5.1E-10 1.1E-14 90.3 11.7 121 74-194 131-287 (328) 166 PRK14896 ksgA 16S ribosomal RN 99.2 3.3E-10 7.1E-15 94.6 11.0 88 74-167 15-102 (258) 167 PRK11727 23S rRNA mA1618 methy 99.2 5.9E-10 1.3E-14 94.8 12.4 149 88-243 114-296 (321) 168 PLN02589 caffeoyl-CoA O-methyl 99.1 2.9E-10 6.3E-15 93.3 9.9 120 71-197 65-195 (247) 169 COG3963 Phospholipid N-methylt 99.1 7.5E-10 1.6E-14 82.8 11.0 147 35-197 5-161 (194) 170 PRK00274 ksgA 16S ribosomal RN 99.1 3.3E-10 7.2E-15 95.3 9.8 87 74-165 28-114 (272) 171 COG0220 Predicted S-adenosylme 99.1 6.9E-10 1.5E-14 89.8 10.6 102 90-192 50-164 (227) 172 PF11968 DUF3321: Putative met 99.1 1.1E-09 2.4E-14 86.3 11.0 118 90-240 53-182 (219) 173 COG2521 Predicted archaeal met 99.1 2.6E-10 5.6E-15 89.9 7.3 142 82-239 128-277 (287) 174 PF05185 PRMT5: PRMT5 arginine 99.1 1.2E-09 2.6E-14 97.4 12.5 120 69-189 163-294 (448) 175 PRK10611 chemotaxis methyltran 99.1 3.2E-10 7E-15 95.0 8.3 104 89-192 116-262 (287) 176 TIGR02085 meth_trns_rumB 23S r 99.1 1.6E-09 3.5E-14 95.2 12.8 116 74-193 219-335 (374) 177 KOG2915|consensus 99.1 4E-09 8.6E-14 85.1 13.4 109 77-190 94-208 (314) 178 COG1092 Predicted SAM-dependen 99.1 1.1E-09 2.5E-14 95.1 10.7 106 88-194 217-338 (393) 179 COG1352 CheR Methylase of chem 99.1 3.1E-09 6.7E-14 87.9 12.3 124 67-191 76-240 (268) 180 PF03141 Methyltransf_29: Puta 99.0 2.3E-10 5E-15 100.3 5.5 118 72-196 97-223 (506) 181 KOG3178|consensus 99.0 1.8E-08 3.9E-13 84.9 16.2 147 89-244 178-335 (342) 182 TIGR00095 RNA methyltransferas 99.0 5.4E-09 1.2E-13 82.9 11.7 119 73-192 33-159 (189) 183 TIGR00755 ksgA dimethyladenosi 99.0 5.7E-09 1.2E-13 87.0 11.5 85 74-164 15-102 (253) 184 TIGR00478 tly hemolysin TlyA f 99.0 2.5E-09 5.3E-14 86.8 9.0 146 77-241 63-219 (228) 185 KOG1500|consensus 99.0 4.6E-09 1E-13 87.1 10.4 109 80-190 169-280 (517) 186 PF01234 NNMT_PNMT_TEMT: NNMT/ 99.0 4.8E-10 1E-14 92.0 4.4 144 88-238 56-238 (256) 187 PF07942 N2227: N2227-like pro 99.0 6.1E-08 1.3E-12 80.1 16.8 144 88-239 56-242 (270) 188 TIGR03439 methyl_EasF probable 99.0 5.6E-09 1.2E-13 88.9 10.6 147 36-191 33-196 (319) 189 KOG1661|consensus 98.9 8.8E-09 1.9E-13 80.1 9.6 102 86-192 80-193 (237) 190 PLN02823 spermine synthase 98.9 1.6E-08 3.5E-13 86.9 11.8 104 88-191 103-219 (336) 191 PRK04148 hypothetical protein; 98.9 1.7E-08 3.8E-13 74.1 10.2 106 76-195 4-112 (134) 192 PF03602 Cons_hypoth95: Conser 98.9 2.2E-09 4.7E-14 84.5 5.7 125 70-194 22-155 (183) 193 PF02475 Met_10: Met-10+ like- 98.9 6.5E-09 1.4E-13 82.6 8.3 103 79-189 94-199 (200) 194 PF04672 Methyltransf_19: S-ad 98.9 4E-09 8.7E-14 86.3 7.0 190 44-236 15-233 (267) 195 PRK04338 N(2),N(2)-dimethylgua 98.9 1.5E-08 3.2E-13 88.9 10.7 99 88-191 57-157 (382) 196 KOG0820|consensus 98.9 2.2E-08 4.7E-13 81.0 10.6 90 74-166 44-133 (315) 197 KOG1663|consensus 98.9 4.3E-08 9.3E-13 77.7 11.9 115 76-197 64-188 (237) 198 KOG1331|consensus 98.9 1.7E-09 3.6E-14 88.2 4.0 109 77-197 36-148 (293) 199 PRK11933 yebU rRNA (cytosine-C 98.9 2.9E-08 6.2E-13 89.0 11.8 112 85-197 110-247 (470) 200 COG0030 KsgA Dimethyladenosine 98.9 2.5E-08 5.3E-13 81.7 10.3 94 74-172 16-110 (259) 201 KOG3191|consensus 98.8 2.5E-07 5.4E-12 70.5 14.6 124 89-237 44-191 (209) 202 PF10672 Methyltrans_SAM: S-ad 98.8 9.6E-09 2.1E-13 85.9 7.4 107 87-194 122-240 (286) 203 PF09243 Rsm22: Mitochondrial 98.8 6.1E-08 1.3E-12 81.5 12.0 119 74-196 19-143 (274) 204 PF02527 GidB: rRNA small subu 98.8 7.9E-08 1.7E-12 75.5 11.7 125 91-241 51-177 (184) 205 PRK01544 bifunctional N5-gluta 98.8 5.7E-08 1.2E-12 88.6 12.0 123 69-192 321-462 (506) 206 COG0742 N6-adenine-specific me 98.8 1.2E-07 2.6E-12 73.6 11.7 128 66-193 19-155 (187) 207 KOG3420|consensus 98.8 2.5E-08 5.3E-13 72.9 7.1 91 75-167 35-125 (185) 208 PRK00050 16S rRNA m(4)C1402 me 98.8 2E-08 4.4E-13 84.4 7.8 88 76-166 7-100 (296) 209 TIGR02143 trmA_only tRNA (urac 98.8 7.4E-08 1.6E-12 84.0 11.6 114 73-194 183-313 (353) 210 PRK05031 tRNA (uracil-5-)-meth 98.8 1.1E-07 2.3E-12 83.3 11.6 114 73-194 192-322 (362) 211 COG0421 SpeE Spermidine syntha 98.7 1.4E-07 3E-12 79.0 11.4 117 74-192 63-190 (282) 212 COG2265 TrmA SAM-dependent met 98.7 2.3E-07 5E-12 82.4 13.4 144 71-241 276-422 (432) 213 COG2520 Predicted methyltransf 98.7 3.3E-07 7.1E-12 78.2 13.7 109 87-199 187-296 (341) 214 PF08123 DOT1: Histone methyla 98.7 9.7E-08 2.1E-12 76.3 9.9 117 72-190 26-156 (205) 215 COG0116 Predicted N6-adenine-s 98.7 3E-07 6.4E-12 79.0 12.4 138 52-192 158-344 (381) 216 PF01564 Spermine_synth: Sperm 98.7 1.2E-07 2.7E-12 78.3 9.6 105 88-192 76-191 (246) 217 PF04816 DUF633: Family of unk 98.7 4.4E-07 9.5E-12 72.6 12.0 120 92-239 1-124 (205) 218 PF09445 Methyltransf_15: RNA 98.7 4.2E-08 9E-13 74.9 5.7 71 91-162 2-75 (163) 219 PF03059 NAS: Nicotianamine sy 98.7 2.3E-07 4.9E-12 77.0 10.4 103 89-191 121-229 (276) 220 PF02384 N6_Mtase: N-6 DNA Met 98.6 2.8E-07 6.1E-12 79.4 10.6 121 74-194 32-185 (311) 221 KOG3201|consensus 98.6 4.9E-08 1.1E-12 72.7 4.7 151 74-245 15-172 (201) 222 COG0357 GidB Predicted S-adeno 98.6 9.3E-07 2E-11 70.7 12.2 130 89-244 68-200 (215) 223 PRK11783 rlmL 23S rRNA m(2)G24 98.6 7.4E-07 1.6E-11 84.7 13.6 121 73-193 174-348 (702) 224 COG3897 Predicted methyltransf 98.6 3.4E-07 7.5E-12 70.6 9.0 118 73-195 64-182 (218) 225 COG0144 Sun tRNA and rRNA cyto 98.6 9.1E-07 2E-11 77.1 12.9 125 73-198 141-294 (355) 226 PRK00536 speE spermidine synth 98.6 7.9E-07 1.7E-11 73.6 11.6 99 87-193 71-172 (262) 227 PF01269 Fibrillarin: Fibrilla 98.6 3.8E-06 8.3E-11 66.7 14.1 150 74-242 56-215 (229) 228 COG4798 Predicted methyltransf 98.5 4.1E-07 8.9E-12 70.0 8.0 156 79-244 39-210 (238) 229 KOG3987|consensus 98.5 1.8E-08 3.9E-13 78.1 0.5 144 89-243 113-264 (288) 230 COG0500 SmtA SAM-dependent met 98.5 2.2E-06 4.8E-11 66.3 12.4 104 92-198 52-161 (257) 231 PF05958 tRNA_U5-meth_tr: tRNA 98.5 6.5E-07 1.4E-11 78.1 9.5 77 71-150 180-256 (352) 232 PF13679 Methyltransf_32: Meth 98.5 2.3E-06 4.9E-11 64.7 11.3 100 87-191 24-130 (141) 233 TIGR00308 TRM1 tRNA(guanine-26 98.5 1.7E-06 3.6E-11 75.7 10.7 99 89-192 45-147 (374) 234 PF00398 RrnaAD: Ribosomal RNA 98.5 1E-06 2.2E-11 73.8 9.1 105 74-184 16-123 (262) 235 COG4262 Predicted spermidine s 98.4 6.2E-06 1.3E-10 69.7 12.1 108 87-194 288-409 (508) 236 COG0293 FtsJ 23S rRNA methylas 98.4 6.5E-06 1.4E-10 65.0 11.0 111 72-194 29-161 (205) 237 COG1889 NOP1 Fibrillarin-like 98.4 2.8E-05 6E-10 60.6 14.0 149 74-241 59-216 (231) 238 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.4 1.7E-06 3.7E-11 73.1 8.1 123 73-196 70-223 (283) 239 PF01728 FtsJ: FtsJ-like methy 98.3 4E-07 8.6E-12 72.0 3.3 105 78-194 10-141 (181) 240 KOG2730|consensus 98.3 5E-07 1.1E-11 70.9 3.3 73 89-162 95-171 (263) 241 KOG1709|consensus 98.2 1.6E-05 3.5E-10 62.4 9.9 104 87-192 100-206 (271) 242 TIGR02987 met_A_Alw26 type II 98.2 2.7E-05 5.8E-10 72.0 12.4 75 88-163 31-119 (524) 243 PF07091 FmrO: Ribosomal RNA m 98.2 2.2E-05 4.9E-10 63.7 10.3 94 74-172 93-187 (251) 244 PF13578 Methyltransf_24: Meth 98.2 4.2E-07 9.1E-12 65.1 0.3 98 93-192 1-105 (106) 245 KOG2187|consensus 98.2 2.2E-05 4.9E-10 69.5 10.7 121 72-194 367-492 (534) 246 COG4076 Predicted RNA methylas 98.1 6.7E-06 1.5E-10 63.1 6.1 98 90-191 34-134 (252) 247 KOG2352|consensus 98.1 4.4E-05 9.6E-10 67.4 11.4 114 77-194 38-163 (482) 248 KOG2798|consensus 98.1 7.7E-05 1.7E-09 62.0 11.6 151 89-246 151-344 (369) 249 PF06962 rRNA_methylase: Putat 98.1 2.7E-05 5.9E-10 57.7 8.2 117 113-243 1-129 (140) 250 COG2384 Predicted SAM-dependen 98.0 0.00025 5.3E-09 56.3 13.4 102 87-191 15-119 (226) 251 PRK11760 putative 23S rRNA C24 98.0 6.4E-05 1.4E-09 64.0 10.9 87 86-185 209-296 (357) 252 PRK10742 putative methyltransf 98.0 3.8E-05 8.3E-10 62.6 9.1 90 78-168 76-176 (250) 253 TIGR00006 S-adenosyl-methyltra 98.0 4.7E-05 1E-09 64.4 9.6 89 76-166 8-102 (305) 254 PF01861 DUF43: Protein of unk 98.0 0.0011 2.4E-08 53.7 16.3 141 76-239 33-178 (243) 255 TIGR01444 fkbM_fam methyltrans 98.0 3.6E-05 7.8E-10 58.2 7.5 58 91-149 1-59 (143) 256 COG4627 Uncharacterized protei 97.9 4.9E-06 1.1E-10 61.7 2.2 56 140-195 31-89 (185) 257 PF05971 Methyltransf_10: Prot 97.9 0.00022 4.8E-09 60.1 11.9 84 89-172 103-193 (299) 258 KOG1122|consensus 97.9 0.00012 2.6E-09 63.3 9.9 115 83-199 236-378 (460) 259 PLN02668 indole-3-acetate carb 97.8 0.0053 1.2E-07 53.8 19.6 152 89-240 64-310 (386) 260 COG1064 AdhP Zn-dependent alco 97.8 0.00044 9.6E-09 59.3 12.4 102 81-195 159-262 (339) 261 KOG4058|consensus 97.8 0.00024 5.2E-09 52.5 9.2 123 70-196 54-176 (199) 262 COG1189 Predicted rRNA methyla 97.8 7.2E-05 1.6E-09 60.1 6.7 156 71-240 62-225 (245) 263 PF03492 Methyltransf_7: SAM d 97.6 0.0079 1.7E-07 52.2 17.4 163 78-241 6-255 (334) 264 PF04445 SAM_MT: Putative SAM- 97.6 0.0003 6.6E-09 57.0 7.9 90 78-168 63-163 (234) 265 KOG4589|consensus 97.5 0.00078 1.7E-08 52.0 8.6 97 86-194 67-186 (232) 266 COG5459 Predicted rRNA methyla 97.5 0.00057 1.2E-08 57.9 8.1 109 88-197 113-230 (484) 267 TIGR00027 mthyl_TIGR00027 meth 97.4 0.012 2.6E-07 49.2 15.5 147 89-237 82-248 (260) 268 PF04989 CmcI: Cephalosporin h 97.4 0.00036 7.9E-09 55.3 5.8 105 88-194 32-149 (206) 269 KOG1501|consensus 97.4 0.00039 8.5E-09 60.5 6.0 96 90-185 68-168 (636) 270 PRK09424 pntA NAD(P) transhydr 97.4 0.0022 4.7E-08 58.5 10.9 100 86-193 162-286 (509) 271 KOG3115|consensus 97.4 0.00079 1.7E-08 52.6 6.8 104 89-192 61-183 (249) 272 COG0286 HsdM Type I restrictio 97.3 0.0039 8.5E-08 57.0 12.3 120 74-193 172-327 (489) 273 KOG0024|consensus 97.3 0.0009 2E-08 56.3 7.3 109 79-197 160-278 (354) 274 COG0275 Predicted S-adenosylme 97.3 0.0025 5.3E-08 53.3 9.8 90 75-166 10-106 (314) 275 COG4301 Uncharacterized conser 97.3 0.0052 1.1E-07 49.7 11.0 146 37-192 37-193 (321) 276 PF03141 Methyltransf_29: Puta 97.3 0.00041 8.8E-09 61.8 5.3 97 89-194 366-469 (506) 277 COG3129 Predicted SAM-dependen 97.3 0.0033 7.2E-08 50.3 9.6 101 70-170 58-167 (292) 278 PF02005 TRM: N2,N2-dimethylgu 97.3 0.00097 2.1E-08 58.6 7.4 102 88-193 49-155 (377) 279 KOG0822|consensus 97.2 0.0021 4.5E-08 57.5 8.8 125 65-191 341-477 (649) 280 KOG2198|consensus 97.2 0.0068 1.5E-07 52.0 11.6 114 83-197 150-301 (375) 281 PRK09880 L-idonate 5-dehydroge 97.2 0.0029 6.3E-08 55.3 9.3 104 81-193 162-267 (343) 282 KOG2793|consensus 97.1 0.006 1.3E-07 50.1 10.1 105 89-193 87-200 (248) 283 KOG2671|consensus 97.1 0.0011 2.4E-08 56.0 5.8 116 77-193 197-355 (421) 284 PF01795 Methyltransf_5: MraW 97.0 0.0013 2.9E-08 55.7 5.7 88 76-165 8-102 (310) 285 COG1063 Tdh Threonine dehydrog 97.0 0.016 3.5E-07 50.8 12.5 99 87-197 167-274 (350) 286 KOG2918|consensus 97.0 0.12 2.7E-06 43.5 16.3 175 54-240 62-278 (335) 287 PF06859 Bin3: Bicoid-interact 96.9 0.0004 8.7E-09 48.9 1.2 86 156-242 1-95 (110) 288 PRK01747 mnmC bifunctional tRN 96.9 0.012 2.7E-07 56.2 11.5 104 87-190 56-204 (662) 289 PRK11524 putative methyltransf 96.9 0.0055 1.2E-07 52.1 8.2 58 74-133 195-252 (284) 290 COG1867 TRM1 N2,N2-dimethylgua 96.8 0.022 4.8E-07 49.0 10.8 100 89-193 53-155 (380) 291 KOG1596|consensus 96.7 0.006 1.3E-07 49.1 6.8 117 72-194 137-263 (317) 292 PF01555 N6_N4_Mtase: DNA meth 96.7 0.0058 1.3E-07 49.9 7.0 55 73-129 177-231 (231) 293 cd08283 FDH_like_1 Glutathione 96.6 0.023 4.9E-07 50.6 10.8 108 82-193 178-307 (386) 294 PRK13699 putative methylase; P 96.6 0.014 3.1E-07 47.7 8.2 59 74-134 150-208 (227) 295 COG1565 Uncharacterized conser 96.6 0.019 4.2E-07 49.4 9.1 69 66-134 55-132 (370) 296 TIGR02822 adh_fam_2 zinc-bindi 96.5 0.051 1.1E-06 47.2 11.5 96 82-193 159-255 (329) 297 KOG1253|consensus 96.4 0.0032 7E-08 55.9 3.8 103 87-193 108-217 (525) 298 PF10354 DUF2431: Domain of un 96.4 0.09 1.9E-06 40.7 11.1 132 95-246 3-159 (166) 299 TIGR00561 pntA NAD(P) transhyd 96.4 0.014 3E-07 53.3 7.5 96 87-190 162-282 (511) 300 KOG2920|consensus 96.3 0.0041 8.8E-08 51.6 3.3 103 87-191 115-233 (282) 301 cd08239 THR_DH_like L-threonin 96.2 0.022 4.8E-07 49.6 8.1 101 81-193 156-263 (339) 302 cd08230 glucose_DH Glucose deh 96.2 0.04 8.7E-07 48.4 9.7 98 86-194 170-271 (355) 303 cd08254 hydroxyacyl_CoA_DH 6-h 96.2 0.1 2.2E-06 45.2 12.1 100 82-193 159-264 (338) 304 KOG1562|consensus 96.2 0.017 3.7E-07 48.1 6.5 108 87-194 120-238 (337) 305 KOG0022|consensus 96.2 0.12 2.7E-06 43.6 11.4 104 80-195 184-297 (375) 306 TIGR03451 mycoS_dep_FDH mycoth 96.1 0.03 6.5E-07 49.2 8.5 101 81-193 169-277 (358) 307 PF11312 DUF3115: Protein of u 96.1 0.012 2.7E-07 49.6 5.6 105 90-194 88-244 (315) 308 PF03269 DUF268: Caenorhabditi 96.1 0.003 6.4E-08 47.7 1.7 130 89-239 2-145 (177) 309 cd08281 liver_ADH_like1 Zinc-d 96.1 0.027 5.8E-07 49.8 8.0 101 81-193 184-291 (371) 310 PHA01634 hypothetical protein 96.1 0.052 1.1E-06 39.3 7.7 47 88-134 28-74 (156) 311 PF00107 ADH_zinc_N: Zinc-bind 96.0 0.016 3.4E-07 42.8 5.2 86 98-195 1-92 (130) 312 PF02636 Methyltransf_28: Puta 95.9 0.025 5.4E-07 47.2 6.3 77 89-170 19-109 (252) 313 KOG2539|consensus 95.8 0.029 6.3E-07 49.7 6.5 113 88-200 200-323 (491) 314 PTZ00357 methyltransferase; Pr 95.7 0.1 2.2E-06 48.7 9.9 97 90-187 702-830 (1072) 315 cd08237 ribitol-5-phosphate_DH 95.7 0.14 3E-06 44.7 10.7 96 84-193 159-257 (341) 316 KOG3924|consensus 95.7 0.082 1.8E-06 46.0 8.8 126 70-196 174-312 (419) 317 PF07757 AdoMet_MTase: Predict 95.7 0.031 6.7E-07 39.3 5.1 31 88-119 58-88 (112) 318 TIGR03366 HpnZ_proposed putati 95.7 0.035 7.6E-07 47.0 6.7 101 81-193 113-219 (280) 319 KOG2078|consensus 95.6 0.011 2.5E-07 51.5 3.4 62 87-149 248-310 (495) 320 PF11899 DUF3419: Protein of u 95.6 0.039 8.4E-07 48.6 6.7 54 78-132 25-78 (380) 321 KOG1099|consensus 95.6 0.025 5.5E-07 45.3 5.0 94 89-194 42-165 (294) 322 cd05188 MDR Medium chain reduc 95.6 0.099 2.1E-06 43.5 9.1 97 86-194 132-234 (271) 323 PF05711 TylF: Macrocin-O-meth 95.5 0.078 1.7E-06 43.8 7.8 103 90-195 76-215 (248) 324 COG0686 Ald Alanine dehydrogen 95.4 0.053 1.2E-06 45.7 6.4 98 89-191 168-267 (371) 325 KOG2651|consensus 95.4 0.08 1.7E-06 45.8 7.4 44 87-130 152-195 (476) 326 cd00401 AdoHcyase S-adenosyl-L 95.3 0.12 2.6E-06 46.1 9.0 101 76-194 188-291 (413) 327 PLN02740 Alcohol dehydrogenase 95.3 0.12 2.5E-06 46.0 9.0 100 82-193 192-301 (381) 328 PLN03154 putative allyl alcoho 95.3 0.14 3.1E-06 44.8 9.3 99 82-192 152-258 (348) 329 PF11599 AviRa: RRNA methyltra 95.2 0.069 1.5E-06 42.5 6.3 120 74-193 37-215 (246) 330 COG3510 CmcI Cephalosporin hyd 95.2 0.078 1.7E-06 41.4 6.4 104 88-197 69-185 (237) 331 COG1568 Predicted methyltransf 95.2 0.16 3.4E-06 42.1 8.4 100 88-191 152-259 (354) 332 PRK10309 galactitol-1-phosphat 95.2 0.099 2.2E-06 45.7 8.0 101 82-194 154-262 (347) 333 TIGR03201 dearomat_had 6-hydro 95.1 0.17 3.6E-06 44.4 9.2 104 82-194 160-274 (349) 334 TIGR01202 bchC 2-desacetyl-2-h 95.1 0.1 2.2E-06 44.9 7.7 88 87-193 143-232 (308) 335 cd00315 Cyt_C5_DNA_methylase C 95.1 0.064 1.4E-06 45.3 6.3 66 91-164 2-70 (275) 336 PF03514 GRAS: GRAS domain fam 95.1 0.93 2E-05 40.1 13.8 114 77-194 99-245 (374) 337 KOG1227|consensus 95.1 0.011 2.4E-07 49.3 1.5 103 88-195 194-300 (351) 338 cd08232 idonate-5-DH L-idonate 95.0 0.19 4.1E-06 43.7 9.2 97 84-192 161-262 (339) 339 COG1062 AdhC Zn-dependent alco 95.0 0.34 7.4E-06 41.6 10.1 107 79-197 176-290 (366) 340 TIGR02825 B4_12hDH leukotriene 94.9 0.24 5.2E-06 42.8 9.6 99 81-192 131-237 (325) 341 TIGR02818 adh_III_F_hyde S-(hy 94.8 0.16 3.5E-06 44.9 8.4 104 81-193 178-288 (368) 342 PRK13699 putative methylase; P 94.7 0.07 1.5E-06 43.7 5.4 51 141-191 3-71 (227) 343 cd08300 alcohol_DH_class_III c 94.7 0.19 4.2E-06 44.3 8.5 102 81-194 179-290 (368) 344 PLN02827 Alcohol dehydrogenase 94.5 0.18 4E-06 44.7 8.0 100 82-193 187-296 (378) 345 COG0604 Qor NADPH:quinone redu 94.4 0.43 9.2E-06 41.5 9.8 108 77-194 131-243 (326) 346 PF05430 Methyltransf_30: S-ad 94.4 0.044 9.6E-07 40.1 3.1 76 140-242 33-114 (124) 347 PF11899 DUF3419: Protein of u 94.4 0.12 2.6E-06 45.6 6.4 67 133-200 271-342 (380) 348 cd08294 leukotriene_B4_DH_like 94.2 0.28 6E-06 42.3 8.3 98 82-192 137-241 (329) 349 cd08277 liver_alcohol_DH_like 94.1 0.31 6.7E-06 43.0 8.5 105 81-194 177-288 (365) 350 cd08245 CAD Cinnamyl alcohol d 94.0 0.57 1.2E-05 40.5 9.9 99 83-193 157-257 (330) 351 COG3315 O-Methyltransferase in 94.0 1.3 2.7E-05 37.9 11.5 148 89-237 93-262 (297) 352 cd08255 2-desacetyl-2-hydroxye 93.9 0.82 1.8E-05 38.3 10.5 99 82-193 91-191 (277) 353 cd08242 MDR_like Medium chain 93.9 0.69 1.5E-05 39.7 10.2 97 80-191 147-244 (319) 354 PLN02586 probable cinnamyl alc 93.9 0.38 8.2E-06 42.4 8.6 97 86-193 181-279 (360) 355 cd08261 Zn_ADH7 Alcohol dehydr 93.7 0.21 4.6E-06 43.4 6.7 102 82-192 153-258 (337) 356 cd05285 sorbitol_DH Sorbitol d 93.7 1.3 2.9E-05 38.5 11.8 101 81-193 155-266 (343) 357 KOG0821|consensus 93.7 0.92 2E-05 36.4 9.4 75 74-150 36-110 (326) 358 cd08296 CAD_like Cinnamyl alco 93.6 0.4 8.6E-06 41.6 8.2 100 82-193 157-260 (333) 359 cd08293 PTGR2 Prostaglandin re 93.6 0.51 1.1E-05 41.1 8.9 99 82-192 146-254 (345) 360 cd08238 sorbose_phosphate_red 93.6 1 2.2E-05 40.4 11.0 102 83-191 170-287 (410) 361 PRK07066 3-hydroxybutyryl-CoA 93.6 2 4.3E-05 37.2 12.1 147 89-246 7-192 (321) 362 TIGR00497 hsdM type I restrict 93.6 1.4 3E-05 40.8 12.0 118 75-192 202-355 (501) 363 cd08285 NADP_ADH NADP(H)-depen 93.5 0.44 9.4E-06 41.7 8.3 100 82-193 160-267 (351) 364 cd08301 alcohol_DH_plants Plan 93.4 0.4 8.6E-06 42.3 8.0 102 81-194 180-291 (369) 365 cd08234 threonine_DH_like L-th 93.4 1.1 2.4E-05 38.7 10.6 100 82-193 153-258 (334) 366 cd08295 double_bond_reductase_ 93.4 0.7 1.5E-05 40.2 9.3 102 82-192 145-251 (338) 367 PF02254 TrkA_N: TrkA-N domain 93.3 2.1 4.6E-05 30.5 10.4 84 97-192 4-96 (116) 368 cd08236 sugar_DH NAD(P)-depend 93.1 0.36 7.7E-06 42.0 7.1 98 83-192 154-258 (343) 369 cd08233 butanediol_DH_like (2R 93.0 0.27 5.8E-06 43.0 6.3 103 82-193 166-273 (351) 370 PF02737 3HCDH_N: 3-hydroxyacy 93.0 0.41 8.9E-06 37.6 6.6 98 91-194 1-116 (180) 371 cd08231 MDR_TM0436_like Hypoth 93.0 1.9 4.1E-05 37.8 11.6 95 87-193 176-281 (361) 372 cd08298 CAD2 Cinnamyl alcohol 92.9 2.8 6.1E-05 36.1 12.5 96 82-193 161-257 (329) 373 PLN02514 cinnamyl-alcohol dehy 92.8 1.3 2.8E-05 38.9 10.3 96 87-193 179-276 (357) 374 cd08278 benzyl_alcohol_DH Benz 92.8 0.24 5.1E-06 43.7 5.6 100 82-193 180-286 (365) 375 TIGR00518 alaDH alanine dehydr 92.8 0.18 4E-06 44.5 4.9 101 88-193 166-268 (370) 376 TIGR02819 fdhA_non_GSH formald 92.7 1.9 4.1E-05 38.6 11.1 106 82-194 179-301 (393) 377 PF05206 TRM13: Methyltransfer 92.6 0.58 1.3E-05 39.0 7.2 76 74-150 4-85 (259) 378 cd05278 FDH_like Formaldehyde 92.5 0.28 6.2E-06 42.6 5.7 97 84-192 163-267 (347) 379 PLN02178 cinnamyl-alcohol dehy 92.1 1.1 2.5E-05 39.6 9.0 95 87-193 177-274 (375) 380 PF10237 N6-adenineMlase: Prob 92.0 3.9 8.4E-05 31.5 10.6 107 71-192 10-123 (162) 381 PRK10458 DNA cytosine methylas 92.0 3.9 8.5E-05 37.3 12.3 58 89-150 88-146 (467) 382 PF07279 DUF1442: Protein of u 91.9 3.6 7.9E-05 33.0 10.5 102 88-194 41-150 (218) 383 TIGR00936 ahcY adenosylhomocys 91.9 1.4 3E-05 39.4 9.1 101 76-194 181-284 (406) 384 PF04072 LCM: Leucine carboxyl 91.9 1.4 3E-05 34.7 8.4 88 90-178 80-182 (183) 385 PRK11524 putative methyltransf 91.8 0.15 3.2E-06 43.3 3.0 53 139-191 8-79 (284) 386 cd05279 Zn_ADH1 Liver alcohol 91.8 0.61 1.3E-05 41.1 6.9 105 81-194 176-287 (365) 387 KOG0023|consensus 91.5 0.82 1.8E-05 39.0 6.8 103 81-196 174-283 (360) 388 cd08279 Zn_ADH_class_III Class 91.5 0.66 1.4E-05 40.8 6.8 101 81-193 175-283 (363) 389 cd08286 FDH_like_ADH2 formalde 91.4 1.6 3.5E-05 37.9 9.2 101 82-192 160-266 (345) 390 KOG2352|consensus 91.3 0.46 1E-05 42.7 5.5 110 88-199 295-423 (482) 391 PLN02494 adenosylhomocysteinas 91.3 0.84 1.8E-05 41.4 7.1 100 76-193 240-342 (477) 392 PRK05476 S-adenosyl-L-homocyst 91.3 1.6 3.5E-05 39.2 8.9 89 88-194 211-301 (425) 393 PRK08306 dipicolinate synthase 91.2 2 4.3E-05 36.8 9.2 127 81-246 143-271 (296) 394 PRK05808 3-hydroxybutyryl-CoA 90.8 5.9 0.00013 33.5 11.7 144 91-246 5-190 (282) 395 PRK11154 fadJ multifunctional 90.7 4.4 9.6E-05 39.3 12.0 97 89-191 309-424 (708) 396 cd08263 Zn_ADH10 Alcohol dehyd 90.7 4.9 0.00011 35.3 11.6 97 84-192 183-287 (367) 397 COG0270 Dcm Site-specific DNA 90.7 2.9 6.3E-05 36.3 9.9 121 89-233 3-141 (328) 398 PRK05786 fabG 3-ketoacyl-(acyl 90.5 7.1 0.00015 31.7 11.7 102 88-193 4-136 (238) 399 TIGR02437 FadB fatty oxidation 90.2 3.6 7.8E-05 39.9 10.9 146 89-246 313-500 (714) 400 PRK11730 fadB multifunctional 90.0 3.4 7.4E-05 40.1 10.6 146 90-246 314-500 (715) 401 cd05283 CAD1 Cinnamyl alcohol 89.9 4.1 8.8E-05 35.3 10.3 100 82-193 163-264 (337) 402 PRK10083 putative oxidoreducta 89.9 2.1 4.6E-05 37.1 8.5 105 80-193 152-260 (339) 403 cd08265 Zn_ADH3 Alcohol dehydr 89.8 4.7 0.0001 35.8 10.7 99 84-192 199-307 (384) 404 cd08287 FDH_like_ADH3 formalde 89.5 1.2 2.7E-05 38.7 6.7 99 83-193 163-269 (345) 405 PF03686 UPF0146: Uncharacteri 89.4 1.8 3.9E-05 31.6 6.3 99 76-194 4-104 (127) 406 KOG2912|consensus 89.2 1.3 2.8E-05 37.7 6.1 92 75-166 87-188 (419) 407 cd05281 TDH Threonine dehydrog 89.2 1.3 2.9E-05 38.4 6.7 97 86-192 161-262 (341) 408 COG5379 BtaA S-adenosylmethion 89.1 1.4 3E-05 37.1 6.1 49 84-133 59-107 (414) 409 COG1748 LYS9 Saccharopine dehy 89.0 4.9 0.00011 35.6 9.9 69 90-163 2-75 (389) 410 PRK08324 short chain dehydroge 89.0 4.4 9.5E-05 39.1 10.5 101 88-192 421-557 (681) 411 cd08260 Zn_ADH6 Alcohol dehydr 88.8 2.5 5.4E-05 36.8 8.2 100 82-193 159-265 (345) 412 cd08274 MDR9 Medium chain dehy 88.5 6.9 0.00015 33.9 10.8 97 82-192 171-273 (350) 413 TIGR00692 tdh L-threonine 3-de 88.3 6 0.00013 34.3 10.2 96 86-193 159-262 (340) 414 cd05284 arabinose_DH_like D-ar 88.2 1.2 2.6E-05 38.6 5.8 95 86-193 165-267 (340) 415 PF00145 DNA_methylase: C-5 cy 88.1 0.8 1.7E-05 39.5 4.6 64 91-164 2-69 (335) 416 COG2933 Predicted SAM-dependen 88.1 2.1 4.6E-05 35.5 6.4 88 85-185 208-296 (358) 417 TIGR02441 fa_ox_alpha_mit fatt 88.0 5.3 0.00012 38.9 10.3 145 90-246 336-522 (737) 418 PLN02702 L-idonate 5-dehydroge 87.9 10 0.00023 33.2 11.6 103 82-193 175-286 (364) 419 cd08241 QOR1 Quinone oxidoredu 87.9 2.4 5.2E-05 36.0 7.5 98 83-193 134-239 (323) 420 COG0863 DNA modification methy 87.9 3.1 6.8E-05 35.4 8.1 59 74-134 209-267 (302) 421 cd08284 FDH_like_2 Glutathione 87.9 9.2 0.0002 33.1 11.1 98 84-194 163-268 (344) 422 KOG1201|consensus 87.8 4.9 0.00011 34.0 8.7 78 88-169 37-127 (300) 423 cd05286 QOR2 Quinone oxidoredu 87.8 1.5 3.2E-05 37.3 6.0 98 83-193 131-236 (320) 424 cd08235 iditol_2_DH_like L-idi 87.7 1.4 3E-05 38.3 5.9 99 82-192 159-265 (343) 425 PRK05708 2-dehydropantoate 2-r 87.7 4.7 0.0001 34.6 9.0 95 90-191 3-103 (305) 426 cd05289 MDR_like_2 alcohol deh 87.7 13 0.00028 31.3 11.8 94 85-192 141-238 (309) 427 cd08291 ETR_like_1 2-enoyl thi 87.5 8 0.00017 33.2 10.5 93 88-193 142-243 (324) 428 PRK08265 short chain dehydroge 87.3 8 0.00017 32.1 10.0 73 88-166 5-90 (261) 429 cd08240 6_hydroxyhexanoate_dh_ 87.2 11 0.00025 32.7 11.4 94 87-192 174-274 (350) 430 cd08299 alcohol_DH_class_I_II_ 87.0 4 8.7E-05 36.1 8.4 105 81-194 183-294 (373) 431 PRK06035 3-hydroxyacyl-CoA deh 86.9 3.5 7.6E-05 35.1 7.7 145 90-246 4-193 (291) 432 PF12692 Methyltransf_17: S-ad 86.8 3.5 7.5E-05 31.0 6.4 49 71-120 12-61 (160) 433 cd08269 Zn_ADH9 Alcohol dehydr 86.8 17 0.00036 30.8 12.0 99 83-193 124-230 (312) 434 PF05050 Methyltransf_21: Meth 86.8 2.2 4.8E-05 32.4 6.0 53 94-146 1-60 (167) 435 cd08282 PFDH_like Pseudomonas 86.7 11 0.00023 33.4 11.0 104 82-193 170-286 (375) 436 PRK12939 short chain dehydroge 86.6 6.4 0.00014 32.2 9.0 76 88-166 6-94 (250) 437 PRK07819 3-hydroxybutyryl-CoA 86.6 3.8 8.2E-05 34.9 7.7 94 90-190 6-119 (286) 438 PRK13771 putative alcohol dehy 86.4 5.1 0.00011 34.6 8.6 98 83-193 157-256 (334) 439 PRK07806 short chain dehydroge 86.3 9.8 0.00021 31.1 10.0 102 88-192 5-134 (248) 440 KOG1197|consensus 86.2 5 0.00011 33.3 7.6 103 81-193 139-246 (336) 441 cd08243 quinone_oxidoreductase 86.2 17 0.00037 30.8 11.8 96 83-192 137-238 (320) 442 PRK09260 3-hydroxybutyryl-CoA 85.9 4.1 8.9E-05 34.6 7.6 94 91-190 3-115 (288) 443 PRK07109 short chain dehydroge 85.9 14 0.00031 32.1 11.1 76 88-166 7-95 (334) 444 TIGR02440 FadJ fatty oxidation 85.8 8.5 0.00018 37.3 10.4 146 90-246 305-492 (699) 445 cd08289 MDR_yhfp_like Yhfp put 85.8 3.9 8.4E-05 35.1 7.6 94 88-194 146-245 (326) 446 PRK05396 tdh L-threonine 3-deh 85.6 2 4.3E-05 37.3 5.7 96 87-194 162-265 (341) 447 PTZ00354 alcohol dehydrogenase 85.4 11 0.00023 32.4 10.2 96 84-192 136-240 (334) 448 KOG2782|consensus 85.3 0.54 1.2E-05 37.6 1.7 92 76-168 31-130 (303) 449 cd08292 ETR_like_2 2-enoyl thi 85.3 2.1 4.5E-05 36.8 5.6 98 82-192 133-238 (324) 450 KOG1209|consensus 85.3 7.7 0.00017 31.3 8.1 70 88-165 6-90 (289) 451 cd05288 PGDH Prostaglandin deh 85.2 9.2 0.0002 32.8 9.6 98 83-192 140-244 (329) 452 PRK08293 3-hydroxybutyryl-CoA 85.0 5.2 0.00011 34.0 7.8 94 90-189 4-117 (287) 453 PRK09422 ethanol-active dehydr 84.7 3.3 7.2E-05 35.8 6.7 99 82-193 156-262 (338) 454 cd08266 Zn_ADH_like1 Alcohol d 84.5 3.5 7.6E-05 35.4 6.7 98 82-192 160-265 (342) 455 COG4017 Uncharacterized protei 84.3 10 0.00022 30.0 8.1 97 78-194 34-131 (254) 456 cd05213 NAD_bind_Glutamyl_tRNA 83.9 5.4 0.00012 34.4 7.5 39 87-125 176-216 (311) 457 PTZ00075 Adenosylhomocysteinas 83.8 2.3 5.1E-05 38.7 5.3 99 78-194 242-343 (476) 458 PRK07417 arogenate dehydrogena 83.7 7.3 0.00016 32.9 8.1 83 91-187 2-86 (279) 459 PRK07530 3-hydroxybutyryl-CoA 83.7 14 0.0003 31.4 9.9 93 90-189 5-116 (292) 460 KOG1098|consensus 83.6 2.3 5.1E-05 39.5 5.2 36 86-121 42-79 (780) 461 cd08246 crotonyl_coA_red croto 83.4 2.6 5.7E-05 37.5 5.6 46 84-129 189-236 (393) 462 PRK06701 short chain dehydroge 83.3 9.8 0.00021 32.3 8.8 102 88-192 45-181 (290) 463 cd08262 Zn_ADH8 Alcohol dehydr 83.3 19 0.00041 31.1 10.8 100 82-193 155-265 (341) 464 TIGR00675 dcm DNA-methyltransf 83.3 2.7 5.8E-05 36.3 5.3 64 92-163 1-66 (315) 465 cd08258 Zn_ADH4 Alcohol dehydr 83.1 8.3 0.00018 32.9 8.4 104 81-194 157-266 (306) 466 PRK03562 glutathione-regulated 83.0 10 0.00023 36.1 9.6 91 89-192 400-498 (621) 467 cd08297 CAD3 Cinnamyl alcohol 82.8 4.3 9.3E-05 35.2 6.6 98 84-193 161-266 (341) 468 TIGR02354 thiF_fam2 thiamine b 82.8 5.6 0.00012 31.8 6.7 94 88-184 20-137 (200) 469 PRK10669 putative cation:proto 82.7 11 0.00025 35.4 9.7 89 90-191 418-514 (558) 470 KOG1269|consensus 82.5 6.6 0.00014 34.6 7.5 108 89-199 181-320 (364) 471 PRK06940 short chain dehydroge 82.5 24 0.00052 29.6 10.8 96 91-190 4-123 (275) 472 PF02558 ApbA: Ketopantoate re 82.4 5.8 0.00013 29.8 6.4 90 92-193 1-102 (151) 473 PLN03209 translocon at the inn 82.2 7.4 0.00016 36.5 8.0 82 83-165 74-168 (576) 474 PRK03659 glutathione-regulated 82.0 12 0.00025 35.7 9.5 92 90-194 401-500 (601) 475 PRK06522 2-dehydropantoate 2-r 82.0 15 0.00032 31.2 9.5 92 91-191 2-99 (304) 476 COG0569 TrkA K+ transport syst 82.0 7.3 0.00016 31.8 7.2 66 91-162 2-72 (225) 477 cd08250 Mgc45594_like Mgc45594 81.9 32 0.00069 29.4 12.1 97 83-192 134-237 (329) 478 PF14740 DUF4471: Domain of un 81.8 4.2 9.1E-05 34.5 5.8 67 154-236 220-286 (289) 479 cd08270 MDR4 Medium chain dehy 81.7 24 0.00052 29.7 10.8 93 85-193 129-223 (305) 480 cd08267 MDR1 Medium chain dehy 81.6 25 0.00055 29.7 10.9 99 85-193 140-241 (319) 481 PRK06914 short chain dehydroge 81.5 12 0.00026 31.3 8.7 77 89-166 3-91 (280) 482 PRK15001 SAM-dependent 23S rib 81.3 14 0.00031 32.8 9.1 92 91-194 47-144 (378) 483 cd08276 MDR7 Medium chain dehy 80.8 20 0.00043 30.7 10.1 97 84-193 156-260 (336) 484 cd08256 Zn_ADH2 Alcohol dehydr 80.7 3.4 7.3E-05 36.0 5.2 99 82-192 168-274 (350) 485 PRK07454 short chain dehydroge 80.6 17 0.00036 29.6 9.1 76 88-166 5-93 (241) 486 PRK06128 oxidoreductase; Provi 80.6 25 0.00055 29.8 10.4 101 88-191 54-190 (300) 487 cd08244 MDR_enoyl_red Possible 80.6 4.3 9.2E-05 34.7 5.7 100 81-193 135-242 (324) 488 PRK08213 gluconate 5-dehydroge 80.5 14 0.0003 30.5 8.6 76 88-166 11-99 (259) 489 PRK09548 PTS system ascorbate- 80.5 6.8 0.00015 36.7 7.1 61 87-166 504-564 (602) 490 PF02719 Polysacc_synt_2: Poly 80.5 3.2 6.9E-05 35.3 4.6 74 97-170 5-91 (293) 491 COG1086 Predicted nucleoside-d 80.3 11 0.00024 35.0 8.2 82 88-170 249-339 (588) 492 PRK06124 gluconate 5-dehydroge 80.3 14 0.00031 30.3 8.7 76 88-166 10-98 (256) 493 KOG1198|consensus 80.2 3.9 8.5E-05 35.8 5.3 117 69-194 132-258 (347) 494 TIGR02823 oxido_YhdH putative 80.2 10 0.00022 32.5 8.0 96 85-193 141-242 (323) 495 PF02086 MethyltransfD12: D12 80.1 4.1 8.9E-05 33.8 5.3 58 75-133 7-64 (260) 496 TIGR02356 adenyl_thiF thiazole 80.1 4.3 9.4E-05 32.5 5.2 32 88-120 20-54 (202) 497 PRK07063 short chain dehydroge 80.0 15 0.00032 30.4 8.6 78 88-166 6-96 (260) 498 PLN02545 3-hydroxybutyryl-CoA 80.0 26 0.00057 29.8 10.3 93 90-189 5-116 (295) 499 cd05282 ETR_like 2-enoyl thioe 80.0 4.3 9.4E-05 34.7 5.6 94 85-191 135-236 (323) 500 PRK07984 enoyl-(acyl carrier p 79.9 33 0.00073 28.5 10.7 76 88-166 5-94 (262) No 1 >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction:S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D .... Probab=100.00 E-value=1.3e-36 Score=252.79 Aligned_cols=250 Identities=23% Similarity=0.396 Sum_probs=193.0 Q ss_pred CCCchhhHHhhhcCCcccccccccCCceeEe--eccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH Q psy2408 28 GNKGKKTVATLYDSPEGQIGSVLFGGHMHWG--YWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIR 105 (298) Q Consensus 28 ~~~~~~~~~~~yd~~~~~~y~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~ 105 (298) ...+.++++.|||.. ++||..++|..++++ +|.+ +...+.+++.+..+.+++++++++|.+|||||||.|.++.. T Consensus 3 ~~~~~~~i~~hYDl~-ndfy~l~Ld~~m~YS~~~~~~--~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~ 79 (273) T PF02353_consen 3 KKQSRENISAHYDLG-NDFYRLFLDPTMKYSCAYFDE--GDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIY 79 (273) T ss_dssp S---HHHHHHHHTS--HHHHTTTS-TT---S----SS--TT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHH T ss_pred cchHHHHHHHHcCCc-HHHHHHhcCCCCCCCCeecCC--chhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHH Confidence 456788999999999 999999999999866 9987 67789999999999999999999999999999999999999 Q ss_pred HHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH---HHHHHHhhcc Q psy2408 106 LAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AALNEARRVL 182 (298) Q Consensus 106 l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~L 182 (298) +++++|++|+|+++|+++.+.+++++...|+.+++.+...|..+++ .+||.|++.++++|+... .+++++.++| T Consensus 80 ~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~L 156 (273) T PF02353_consen 80 AAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLL 156 (273) T ss_dssp HHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHS T ss_pred HHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhc Confidence 9998899999999999999999999999999999999999998875 389999999999999643 9999999999 Q ss_pred cCCcEEEEEeCCCCCCCCCh------hHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcccchHHHHHHHH Q psy2408 183 KSGSILTLTDLPLLSVSKND------NKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEAT 256 (298) Q Consensus 183 kpgG~l~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~ 256 (298) +|||++++..+......... ....... ++...+++.+++...++++||++.+..+++.++.. +++.|.+++ T Consensus 157 kpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyi--FPgg~lps~~~~~~~~~~~~l~v~~~~~~~~hY~~-Tl~~W~~~f 233 (273) T PF02353_consen 157 KPGGRLVLQTITHRDPPYHAERRSSSDFIRKYI--FPGGYLPSLSEILRAAEDAGLEVEDVENLGRHYAR-TLRAWRENF 233 (273) T ss_dssp ETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHT--STTS---BHHHHHHHHHHTT-EEEEEEE-HHHHHH-HHHHHHHHH T ss_pred CCCcEEEEEecccccccchhhcCCCceEEEEee--CCCCCCCCHHHHHHHHhcCCEEEEEEEEcCcCHHH-HHHHHHHHH Confidence 99999999877654421100 1111111 23445667888888899999999999999999999 999999999 Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHhhccccc Q psy2408 257 LTYKKEIYKSIPNPEKSIDNWLYLFKYMSKNL 288 (298) Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (298) .+.++++.+.++ +.+.+.|..++..|+..| T Consensus 234 ~~~~~~i~~~~~--~~f~r~w~~yl~~~~~~F 263 (273) T PF02353_consen 234 DANREEIIALFD--EEFYRMWRYYLAYCAAGF 263 (273) T ss_dssp HHTHHHHHHHSH--HHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHhcC--HHHHHHHHHHHHHHHHHH Confidence 999999999986 799999999999886644 No 2 >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] Probab=100.00 E-value=2.3e-34 Score=235.18 Aligned_cols=253 Identities=18% Similarity=0.304 Sum_probs=219.5 Q ss_pred ccCCCCchhhHHhhhcCCcccccccccCCceeE--eeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHH Q psy2408 25 ENKGNKGKKTVATLYDSPEGQIGSVLFGGHMHW--GYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLS 102 (298) Q Consensus 25 ~~~~~~~~~~~~~~yd~~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~ 102 (298) ..+.....++++.|||.. ++||..+++.++.+ +||.+ +...+.+++....+.+++.+++.||++|||||||.|.+ T Consensus 10 ~~~~~~~~~~i~~HYDl~-n~fy~l~Ld~~~~Yscayf~~--~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l 86 (283) T COG2230 10 RHSKRRAAENIQAHYDLS-NDFYRLFLDPSMTYSCAYFED--PDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGL 86 (283) T ss_pred cccccchhhhhhhHhhcc-hHHHHHhcCCCCceeeEEeCC--CCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHH Confidence 345557788999999999 99999999998864 58876 44589999999999999999999999999999999999 Q ss_pred HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH---HHHHHHh Q psy2408 103 GIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AALNEAR 179 (298) Q Consensus 103 ~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~ 179 (298) ++++|+.++++|+|+++|+++.+.+++++...|+..++++...|..++. +.||.|++.++++|+... .+++.+. T Consensus 87 ~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~ 163 (283) T COG2230 87 AIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVY 163 (283) T ss_pred HHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHHH Confidence 9999998899999999999999999999999999989999999998874 459999999999999884 9999999 Q ss_pred hcccCCcEEEEEeCCCCCCCCChhHHHHHHHh--hcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcccchHHHHHHHHH Q psy2408 180 RVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK--NIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATL 257 (298) Q Consensus 180 r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (298) ++|+|||.+++..+........ ....+... ++...+.+.+++....+++||.+.+...+..++.. +++.|.++|+ T Consensus 164 ~~L~~~G~~llh~I~~~~~~~~--~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~-Tl~~W~~~f~ 240 (283) T COG2230 164 ALLKPGGRMLLHSITGPDQEFR--RFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYAR-TLRLWRERFE 240 (283) T ss_pred hhcCCCceEEEEEecCCCcccc--cchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhhcHHHHH-HHHHHHHHHH Confidence 9999999999998876653320 11111111 22345567788888899999999999999999999 9999999999 Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHhhccccc Q psy2408 258 TYKKEIYKSIPNPEKSIDNWLYLFKYMSKNL 288 (298) Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (298) ..++++.+.++ +.+.+.|..++..|+..+ T Consensus 241 ~~~~~a~~~~~--e~~~r~w~~yl~~~~~~F 269 (283) T COG2230 241 ANRDEAIALYD--ERFYRMWELYLAACAAAF 269 (283) T ss_pred HHHHHHHHHhh--HHHHHHHHHHHHHHHHHh Confidence 99999999976 799999999999986654 No 3 >PLN02244 tocopherol O-methyltransferase Probab=100.00 E-value=5.1e-34 Score=246.43 Aligned_cols=267 Identities=26% Similarity=0.407 Sum_probs=207.1 Q ss_pred cCCCCchhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCC-----CCCCeEEEeCCCCC Q psy2408 26 NKGNKGKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSI-----TKGQRFIDIGCGFG 100 (298) Q Consensus 26 ~~~~~~~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~vLDiGcG~G 100 (298) .......+.++.|||.. +.+|+.+++..+|.|||........+.+++.++.+.+++.+.+ .++.+|||||||+| T Consensus 52 ~~~~~~~~~i~~~Yd~~-~~~~e~~~g~~~h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G 130 (340) T PLN02244 52 AATADLKEGIAEFYDES-SGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIG 130 (340) T ss_pred cchhhHHHHHHHHHccc-hHHHHHHhCCcceeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCC Confidence 44455678899999998 9999999999999999987544677899999999999999987 67889999999999 Q ss_pred HHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHh Q psy2408 101 LSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEAR 179 (298) Q Consensus 101 ~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~ 179 (298) ..+..+++..+++|+|+|+|+.+++.++++....++.+++.++++|+.++|+++++||+|++..+++|++++ .+++++. T Consensus 131 ~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~ 210 (340) T PLN02244 131 GSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELA 210 (340) T ss_pred HHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHH Confidence 999999987788999999999999999999988888778999999999999989999999999999999999 9999999 Q ss_pred hcccCCcEEEEEeCCCCCCCCC----hhHHH----HHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcccchHHH Q psy2408 180 RVLKSGSILTLTDLPLLSVSKN----DNKFK----EYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPK 251 (298) Q Consensus 180 r~LkpgG~l~i~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~ 251 (298) |+|||||++++.++......+. ..... ........+.+.+.+++..+++++||..+...+++..+.+ +... T Consensus 211 rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~v~~-~~~~ 289 (340) T PLN02244 211 RVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEHVAP-FWPA 289 (340) T ss_pred HHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHHHHH-HHHH Confidence 9999999999988654321110 01111 1122223445668999999999999999999999988777 4444 Q ss_pred HHHHHHHHHHHHHhhCCChHHHHHHHHHHH-------hhccccccEEEEEEEeC Q psy2408 252 LTEATLTYKKEIYKSIPNPEKSIDNWLYLF-------KYMSKNLGYIIVTAKKI 298 (298) Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~a~k~ 298 (298) ..+...... .+... .....+.|+..+ ....+.+.|.+|+|+|| T Consensus 290 ~~~~~~~~~-~~~~~---~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~kp 339 (340) T PLN02244 290 VIKSALTLK-GLFGL---LTSGWATIRGALVMPLMIKGFKKGLIKFAVITCRKP 339 (340) T ss_pred HHHHhcCHH-HHHHH---HHHHHHHHhhhhHHHHHHHHHhcCCceeeEEEEeCC Confidence 332221111 11111 111122232221 12378899999999998 No 4 >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional Probab=99.97 E-value=2.9e-30 Score=225.38 Aligned_cols=258 Identities=19% Similarity=0.229 Sum_probs=211.1 Q ss_pred ccCCCCchhhHHhhhcCCcccccccccCCcee--EeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHH Q psy2408 25 ENKGNKGKKTVATLYDSPEGQIGSVLFGGHMH--WGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLS 102 (298) Q Consensus 25 ~~~~~~~~~~~~~~yd~~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~ 102 (298) ..+..+..++++.|||.. +++|..+++..+. .+||.. ...+..++.+....+++.+.+.++.+|||||||+|.+ T Consensus 106 ~n~~~~~~~~i~~hYd~~-n~~y~l~ld~~m~ys~g~~~~---~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~ 181 (383) T PRK11705 106 LQSKKRAWIVGKEHYDLG-NDLFEAMLDPRMQYSCGYWKD---ADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGL 181 (383) T ss_pred cCChhhHHHhhhhhcCCc-HHHHHHhcCCCCcccccccCC---CCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHH Confidence 446677889999999999 9999999998775 478964 5689999999999999999999999999999999999 Q ss_pred HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH---HHHHHHh Q psy2408 103 GIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AALNEAR 179 (298) Q Consensus 103 ~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~ 179 (298) +..+++..+++|+|+|+|+++++.++++.. ++ .+++...|+..+ +++||+|++..+++|++.. .+++++. T Consensus 182 a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~ 254 (383) T PRK11705 182 ARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVR 254 (383) T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHH Confidence 999998778899999999999999999874 32 378888888765 3789999999999999653 8999999 Q ss_pred hcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcccchHHHHHHHHHHH Q psy2408 180 RVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTY 259 (298) Q Consensus 180 r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (298) ++|+|||++++.++...........+...+ -++...+.+.+++...++ .||.+.++..++.++.. ++..|.+.++.. T Consensus 255 r~LkpGG~lvl~~i~~~~~~~~~~~~i~~y-ifp~g~lps~~~i~~~~~-~~~~v~d~~~~~~hy~~-TL~~W~~~f~~~ 331 (383) T PRK11705 255 RCLKPDGLFLLHTIGSNKTDTNVDPWINKY-IFPNGCLPSVRQIAQASE-GLFVMEDWHNFGADYDR-TLMAWHENFEAA 331 (383) T ss_pred HHcCCCcEEEEEEccCCCCCCCCCCCceee-ecCCCcCCCHHHHHHHHH-CCcEEEEEecChhhHHH-HHHHHHHHHHHH Confidence 999999999998776443221111111000 011234556777777655 69999999999999988 999999999999 Q ss_pred HHHHHhhCCChHHHHHHHHHHHhhccc-----cccEEEEEEEeC Q psy2408 260 KKEIYKSIPNPEKSIDNWLYLFKYMSK-----NLGYIIVTAKKI 298 (298) Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~a~k~ 298 (298) ++++.+.++ +.+.+.|..++..|+. .++.+.+++.|+ T Consensus 332 ~~~~~~~~~--~~~~r~w~~yl~~~~~~F~~~~~~~~q~~~~~~ 373 (383) T PRK11705 332 WPELADNYS--ERFYRMWRYYLLSCAGAFRARDIQLWQVVFSPR 373 (383) T ss_pred HHHHHHhCC--HHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeC Confidence 999999887 7999999999998844 567788888774 No 5 >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Probab=99.97 E-value=1.6e-29 Score=210.98 Aligned_cols=243 Identities=21% Similarity=0.323 Sum_probs=187.3 Q ss_pred hhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEE Q psy2408 38 LYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGI 117 (298) Q Consensus 38 ~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~v 117 (298) .|+...-..|+.++|... +. ..-......++..+.+.++.+|||||||+|..+..++...+++|+++ T Consensus 15 ~y~~~~~~~~e~~~g~~~----~~---------~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~gi 81 (263) T PTZ00098 15 QYSDEGIKAYEFIFGEDY----IS---------SGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGV 81 (263) T ss_pred ccccccchhHHHHhCCCC----CC---------CCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEE Confidence 344443566777766432 11 11233367788888889999999999999999999987667899999 Q ss_pred eCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccC--hH-HHHHHHhhcccCCcEEEEEeCC Q psy2408 118 TISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMN--HS-AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 118 D~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~--~~-~~l~~~~r~LkpgG~l~i~~~~ 194 (298) |+|+.+++.+++++.. ..++.+++.|+.+.++++++||+|++..+++|++ ++ .++++++++|||||++++.++. T Consensus 82 D~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263) T PTZ00098 82 DICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263) T ss_pred ECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec Confidence 9999999999988654 2469999999998888889999999999999987 55 9999999999999999999886 Q ss_pred CCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcccchHHHHHHHHHHHHHHHHhhCCC--hHH Q psy2408 195 LLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPN--PEK 272 (298) Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 272 (298) ................. ....+.+.+++.++|+++||+++...+++..+.. .+....+.+.+.++++...+++ .+. T Consensus 159 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGF~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (263) T PTZ00098 159 ADKIENWDEEFKAYIKK-RKYTLIPIQEYGDLIKSCNFQNVVAKDISDYWLE-LLQVELKKLEEKKEEFLKLYSEKEYNS 236 (263) T ss_pred cccccCcHHHHHHHHHh-cCCCCCCHHHHHHHHHHCCCCeeeEEeCcHHHHH-HHHHHHHHHHHhHHHHHHhcCHHHHHH Confidence 54422211222221111 1234678899999999999999999999888777 6666778888899999998886 444 Q ss_pred HHHHHHHHHhhc-cccccEEEEEEEeC Q psy2408 273 SIDNWLYLFKYM-SKNLGYIIVTAKKI 298 (298) Q Consensus 273 ~~~~~~~~~~~~-~~~~~~~~~~a~k~ 298 (298) ....|......+ .+.+.|+++.|+|| T Consensus 237 ~~~~~~~~~~~~~~~~~~wg~~~~~~~ 263 (263) T PTZ00098 237 LKDGWTRKIKDTKRKLQKWGYFKAQKM 263 (263) T ss_pred HHHHHHHHHHHhhccccccceEeecCC Confidence 555666555555 67799999999996 No 6 >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] Probab=99.96 E-value=1.8e-28 Score=197.45 Aligned_cols=199 Identities=27% Similarity=0.386 Sum_probs=158.8 Q ss_pred chhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc Q psy2408 31 GKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK 110 (298) Q Consensus 31 ~~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~ 110 (298) ....++..|++. ++.||.+. ..+.++ ....+.+.++..+...+|.+|||+|||||.++..+++.. T Consensus 9 k~~~v~~vF~~i-a~~YD~~n-~~~S~g-------------~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~ 73 (238) T COG2226 9 KQEKVQKVFDKV-AKKYDLMN-DLMSFG-------------LHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSV 73 (238) T ss_pred cHHHHHHHHHhh-HHHHHhhc-ccccCc-------------chHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhc Confidence 356788899999 99998763 111111 224455667777777789999999999999999999974 Q ss_pred -CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEE Q psy2408 111 -GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSIL 188 (298) Q Consensus 111 -~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l 188 (298) .++|+++|+|+.|++.++++..+.++.. ++++++|+.++||++++||+|.+.+.|.++++. .+|++++|+|||||++ T Consensus 74 g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~ 152 (238) T COG2226 74 GTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRL 152 (238) T ss_pred CCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEE Confidence 4799999999999999999999888765 999999999999999999999999999999999 9999999999999999 Q ss_pred EEEeCCCCCCCCChhHHHHHHHh---------------------hcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcc Q psy2408 189 TLTDLPLLSVSKNDNKFKEYVKK---------------------NIHSNFILVEHYPDLLNKSGFELIKIDDITSHVM 245 (298) Q Consensus 189 ~i~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~ 245 (298) ++.++..+........+..+... .....+.+.+++..+++++||..+..+.+..+.. T Consensus 153 ~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~ 230 (238) T COG2226 153 LVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIV 230 (238) T ss_pred EEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeE Confidence 99999876644322222222111 0112467788999999999999888777666543 No 7 >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. Probab=99.96 E-value=9.9e-29 Score=201.40 Aligned_cols=198 Identities=26% Similarity=0.359 Sum_probs=94.4 Q ss_pred hhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc- Q psy2408 32 KKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK- 110 (298) Q Consensus 32 ~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~- 110 (298) .+.+++.||.. ++.||.+. ..+.++.. ..+.+.+++.+...++.+|||+|||||.++..+++.. T Consensus 6 ~~~v~~~Fd~i-a~~YD~~n-~~ls~g~~-------------~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~ 70 (233) T PF01209_consen 6 EQYVRKMFDRI-APRYDRMN-DLLSFGQD-------------RRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVG 70 (233) T ss_dssp ----------------------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS T ss_pred HHHHHHHHHHH-HHHhCCCc-cccCCcHH-------------HHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCC Confidence 34688999999 99998763 22222211 1222345555567789999999999999999999864 Q ss_pred -CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEE Q psy2408 111 -GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSIL 188 (298) Q Consensus 111 -~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l 188 (298) .++|+|+|+|+.|++.|+++....+.. +++++++|+.++|+++++||+|++.+.+++++++ .++++++|+|||||++ T Consensus 71 ~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l 149 (233) T PF01209_consen 71 PNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRL 149 (233) T ss_dssp ---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEE T ss_pred CccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEE Confidence 469999999999999999999987765 7999999999999999999999999999999999 9999999999999999 Q ss_pred EEEeCCCCCCCCChhHHHHHHHh---------------------hcccCCCCcchHHHHHHhCCCcEEEEEeCCCCccc Q psy2408 189 TLTDLPLLSVSKNDNKFKEYVKK---------------------NIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMP 246 (298) Q Consensus 189 ~i~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~ 246 (298) ++.++..+.... ......++.. .....+.+.+++.++|+++||+.++.+.+..++.. T Consensus 150 ~ile~~~p~~~~-~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~ 227 (233) T PF01209_consen 150 VILEFSKPRNPL-LRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVT 227 (233) T ss_dssp EEEEEEB-SSHH-HHHHHHH----------------------------------------------------------- T ss_pred EEeeccCCCCch-hhceeeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc Confidence 999987655321 1111111100 01234677899999999999999988887776543 No 8 >PLN02336 phosphoethanolamine N-methyltransferase Probab=99.96 E-value=1e-26 Score=210.98 Aligned_cols=216 Identities=22% Similarity=0.345 Sum_probs=174.9 Q ss_pred HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC Q psy2408 77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS 156 (298) Q Consensus 77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 156 (298) .+.+++.+.+.++.+|||||||+|..+..++...+++|+|+|+|+.+++.|+++.. +...++.+.++|+...++++++ T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~ 332 (475) T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNS 332 (475) T ss_pred HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCC Confidence 45566777777889999999999999999998778899999999999999988765 3335799999999988888889 Q ss_pred eeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEE Q psy2408 157 FDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELI 235 (298) Q Consensus 157 fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 235 (298) ||+|++..+++|++++ .++++++++|+|||++++.++......+ ...+...... ......+..++.++++++||.++ T Consensus 333 fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~-~g~~~~~~~~~~~~l~~aGF~~i 410 (475) T PLN02336 333 FDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTP-SPEFAEYIKQ-RGYDLHDVQAYGQMLKDAGFDDV 410 (475) T ss_pred EEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCC-cHHHHHHHHh-cCCCCCCHHHHHHHHHHCCCeee Confidence 9999999999999999 9999999999999999999887654333 1222222222 12356788999999999999999 Q ss_pred EEEeCCCCcccchHHHHHHHHHHHHHHHHhhCCC--hHHHHHHHHHHHhhc-cccccEEEEEEEe Q psy2408 236 KIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPN--PEKSIDNWLYLFKYM-SKNLGYIIVTAKK 297 (298) Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~a~k 297 (298) ..++++..+.. ++..|...+.....++...++. .......|......+ ++.++|++++||| T Consensus 411 ~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wg~~~a~k 474 (475) T PLN02336 411 IAEDRTDQFLQ-VLQRELDAVEKEKDEFISDFSEEDYNDIVGGWKAKLVRSSSGEQKWGLFIAKK 474 (475) T ss_pred eeecchHHHHH-HHHHHHHHHHhCHHHHHHhcCHHHHHHHHHhHHHHHhhhcCCceeeEEEEEec Confidence 99999999888 7777888888888888887775 334455666655544 5678999999998 No 9 >PLN02233 ubiquinone biosynthesis methyltransferase Probab=99.95 E-value=4.6e-26 Score=190.00 Aligned_cols=198 Identities=21% Similarity=0.301 Sum_probs=148.2 Q ss_pred chhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc Q psy2408 31 GKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK 110 (298) Q Consensus 31 ~~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~ 110 (298) -.+.++++||.. ++.||.+... +..+ ....+.+.+++.+.+.++.+|||+|||+|.++..+++.. T Consensus 31 ~~~~v~~~f~~~-A~~YD~~~~~-~s~g-------------~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~ 95 (261) T PLN02233 31 CANERQALFNRI-APVYDNLNDL-LSLG-------------QHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKV 95 (261) T ss_pred hHHHHHHHHHHh-hhHHHHhhhh-hcCC-------------hhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHh Confidence 356788999999 9999975321 1000 011223344556667788999999999999999998864 Q ss_pred --CCeEEEEeCCHHHHHHHHHHHHh--cCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCC Q psy2408 111 --GCRVDGITISKFQQESAMKTAKA--EGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSG 185 (298) Q Consensus 111 --~~~v~~vD~s~~~l~~a~~~~~~--~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~Lkpg 185 (298) .++|+|+|+|++|++.|+++... .....+++++++|+.++|+++++||+|++..++++++++ .+++++.|+|||| T Consensus 96 ~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpG 175 (261) T PLN02233 96 GSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPG 175 (261) T ss_pred CCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcC Confidence 36999999999999999887542 122347999999999999999999999999999999999 9999999999999 Q ss_pred cEEEEEeCCCCCCCCChhHHHHHHHh--------------------hcccCCCCcchHHHHHHhCCCcEEEEEeCCCCc Q psy2408 186 SILTLTDLPLLSVSKNDNKFKEYVKK--------------------NIHSNFILVEHYPDLLNKSGFELIKIDDITSHV 244 (298) Q Consensus 186 G~l~i~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~ 244 (298) |++++.++....... ......+... .....+++.+++.++++++||+++....+..+. T Consensus 176 G~l~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~ 253 (261) T PLN02233 176 SRVSILDFNKSTQPF-TTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEISGGL 253 (261) T ss_pred cEEEEEECCCCCcHH-HHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcCCCe Confidence 999999887544211 0111110000 112357899999999999999999888776554 No 10 >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes. Probab=99.93 E-value=4.2e-25 Score=181.22 Aligned_cols=196 Identities=22% Similarity=0.355 Sum_probs=159.5 Q ss_pred CeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccc Q psy2408 90 QRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFH 168 (298) Q Consensus 90 ~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 168 (298) .+|||||||+|..+..+++.. +++++|+|+|+.+++.+++++...++.++++++..|+...+++ ++||+|++..+++| T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224) T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224) T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh Confidence 379999999999999999875 5799999999999999999999888888899999999766654 58999999999999 Q ss_pred cChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcccc Q psy2408 169 MNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPL 247 (298) Q Consensus 169 ~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~ 247 (298) +++. .+++++.++|+|||++++.++....... ...........+..+|.++++++||.+++..+++.++.. T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~~~- 151 (224) T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLLSA-------IEHEETTSYLVTREEWAELLARNNLRVVEGVDASLEIAN- 151 (224) T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEcccccCcc-------ccccccccccCCHHHHHHHHHHCCCeEEEeEECcHhHhh- Confidence 9999 9999999999999999998875322111 001111233667889999999999999999999998866 Q ss_pred hHHHHHHHHHHHHHHHHhh-CCChHHHHHHHHHHHhhc----cccccEEEEEEEeC Q psy2408 248 LVPKLTEATLTYKKEIYKS-IPNPEKSIDNWLYLFKYM----SKNLGYIIVTAKKI 298 (298) Q Consensus 248 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~k~ 298 (298) +. |...+...++++.+. ++ +.+.+.|..+...+ ++.++|.+++++|+ T Consensus 152 ~l--~~~~f~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 203 (224) T smart00828 152 FL--YDPGFEDNLERLYQDDLD--EVTKRHFRGIANLGKLLEKGLASYALLIVQKD 203 (224) T ss_pred hc--cChhHHHHHHHhccccch--HHHHHHHhhHHHHHHHHHhchHhhEEEEEecc Confidence 32 667788888777773 43 56888888776653 66789999999985 No 11 >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. Probab=99.92 E-value=8e-24 Score=174.45 Aligned_cols=198 Identities=20% Similarity=0.306 Sum_probs=151.8 Q ss_pred hhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc- Q psy2408 32 KKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK- 110 (298) Q Consensus 32 ~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~- 110 (298) .+.++.+|+.. +..||.+..- + ++. ......+.++..+.+.++.+|||+|||+|.++..+++.. T Consensus 4 ~~~~~~~f~~~-a~~yd~~~~~-~--~~~-----------~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~ 68 (231) T TIGR02752 4 EERVHKVFEKI-YKKYDRMNSV-I--SFQ-----------RHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVG 68 (231) T ss_pred HHHHHHHHHHh-hhHHhHHHHH-h--cCC-----------chHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhC Confidence 46788999999 9999875211 1 011 113344667778888889999999999999999999863 Q ss_pred -CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEE Q psy2408 111 -GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSIL 188 (298) Q Consensus 111 -~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l 188 (298) +.+|+|+|+|+.+++.+++++...++ +++.++++|+..+++++++||+|++..++++++++ .+++++.++|+|||++ T Consensus 69 ~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l 147 (231) T TIGR02752 69 PEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKV 147 (231) T ss_pred CCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEE Confidence 46999999999999999999887776 47999999999888888899999999999999999 9999999999999999 Q ss_pred EEEeCCCCCCCCChhHHHHH--------------------HHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcc Q psy2408 189 TLTDLPLLSVSKNDNKFKEY--------------------VKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVM 245 (298) Q Consensus 189 ~i~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~ 245 (298) ++.+................ ........+++.+++.++|+++||.++++..+..+.. T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~ 224 (231) T TIGR02752 148 VCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVA 224 (231) T ss_pred EEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceE Confidence 99876543321100000000 0001223567889999999999999999888776543 No 12 >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional Probab=99.92 E-value=3e-24 Score=179.16 Aligned_cols=161 Identities=20% Similarity=0.244 Sum_probs=126.5 Q ss_pred HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-CCCC Q psy2408 77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-FDND 155 (298) Q Consensus 77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~ 155 (298) ...+++.+. .++.+|||+|||+|..+..+++ .+.+|+++|+|+.|++.|+++....++..+++++++|+.+++ ++++ T Consensus 34 ~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~-~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255) T PRK11036 34 LDRLLAELP-PRPLRVLDAGGGEGQTAIKLAE-LGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET 111 (255) T ss_pred HHHHHHhcC-CCCCEEEEeCCCchHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC Confidence 455666665 4567999999999999999998 588999999999999999999998888778999999998763 5568 Q ss_pred CeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChh----HHHHHHH--------hhcccCCCCcch Q psy2408 156 SFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDN----KFKEYVK--------KNIHSNFILVEH 222 (298) Q Consensus 156 ~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~----~~~~~~~--------~~~~~~~~~~~~ 222 (298) +||+|++..+++|+.++ .+++++.++|||||++++..++...... .. .+..... .......+++++ T Consensus 112 ~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 190 (255) T PRK11036 112 PVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLM-HNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQ 190 (255) T ss_pred CCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHH-HHHHccChHHHHhcCccccccCCCCCCCCCHHH Confidence 99999999999999999 9999999999999999988666432100 00 0000000 011124567899 Q ss_pred HHHHHHhCCCcEEEEEeC Q psy2408 223 YPDLLNKSGFELIKIDDI 240 (298) Q Consensus 223 ~~~~l~~~Gf~~~~~~~~ 240 (298) +.++|+++||+++....+ T Consensus 191 l~~~l~~aGf~~~~~~gi 208 (255) T PRK11036 191 VYQWLEEAGWQIMGKTGV 208 (255) T ss_pred HHHHHHHCCCeEeeeeeE Confidence 999999999999876654 No 13 >KOG1540|consensus Probab=99.91 E-value=6.5e-24 Score=167.65 Aligned_cols=196 Identities=23% Similarity=0.369 Sum_probs=150.2 Q ss_pred hHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHH-HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-C Q psy2408 34 TVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDK-LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-G 111 (298) Q Consensus 34 ~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~ 111 (298) .+.+-|... +..||.+.+- + ....++ +.+..+..+.+.+++++||++||||.++..+.+.. . T Consensus 61 ~V~~vF~~v-A~~YD~mND~-m--------------SlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s 124 (296) T KOG1540|consen 61 LVHHVFESV-AKKYDIMNDA-M--------------SLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKS 124 (296) T ss_pred HHHHHHHHH-HHHHHHHHHH-h--------------hcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhcc Confidence 455666666 6666655322 1 112233 23456788888899999999999999999998863 2 Q ss_pred ------CeEEEEeCCHHHHHHHHHHHHhcCCCCc--eEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHhhcc Q psy2408 112 ------CRVDGITISKFQQESAMKTAKAEGLLDK--VNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVL 182 (298) Q Consensus 112 ------~~v~~vD~s~~~l~~a~~~~~~~~~~~~--i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~L 182 (298) .+|+++|+|++|+..++++..+.++... +.++++|++++||++++||+.++.+.+.+++++ +.|++++|+| T Consensus 125 ~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVL 204 (296) T KOG1540|consen 125 QFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVL 204 (296) T ss_pred ccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhc Confidence 6899999999999999999988777655 899999999999999999999999999999999 9999999999 Q ss_pred cCCcEEEEEeCCCCCCCCChhHHHHHHHh--------------------hcccCCCCcchHHHHHHhCCCcEEE-EEeCC Q psy2408 183 KSGSILTLTDLPLLSVSKNDNKFKEYVKK--------------------NIHSNFILVEHYPDLLNKSGFELIK-IDDIT 241 (298) Q Consensus 183 kpgG~l~i~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~l~~~Gf~~~~-~~~~~ 241 (298) ||||++.+.+++..+..+....+...... .....+.+.+++..+.+++||..+. .+.+. T Consensus 205 KpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~~ye~lt 284 (296) T KOG1540|consen 205 KPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVNGYENLT 284 (296) T ss_pred CCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCccccccccce Confidence 99999999999876632211222111111 0124577889999999999999886 66655 Q ss_pred CCcc Q psy2408 242 SHVM 245 (298) Q Consensus 242 ~~~~ 245 (298) .++. T Consensus 285 ~Gv~ 288 (296) T KOG1540|consen 285 FGVV 288 (296) T ss_pred eeee Confidence 5543 No 14 >PLN02396 hexaprenyldihydroxybenzoate methyltransferase Probab=99.90 E-value=5.3e-23 Score=174.82 Aligned_cols=157 Identities=20% Similarity=0.281 Sum_probs=125.0 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI 166 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 166 (298) .++.+|||||||+|.++..+++ .+++|+|+|+|+.+++.|+.++...+...++.++++|+.++++++++||+|++.+++ T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~-~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322) T PLN02396 130 FEGLKFIDIGCGGGLLSEPLAR-MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322) T ss_pred CCCCEEEEeeCCCCHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH Confidence 4677999999999999999987 688999999999999999988765554457999999999888777899999999999 Q ss_pred cccChH-HHHHHHhhcccCCcEEEEEeCCCCCC-----CCChhHHHHHHHhhc--ccCCCCcchHHHHHHhCCCcEEEEE Q psy2408 167 FHMNHS-AALNEARRVLKSGSILTLTDLPLLSV-----SKNDNKFKEYVKKNI--HSNFILVEHYPDLLNKSGFELIKID 238 (298) Q Consensus 167 ~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~Gf~~~~~~ 238 (298) +|+.++ .+++++.++|||||.+++.+++.... .........+..... ...+++++++..+|+++||++++.. T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322) T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322) T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe Confidence 999999 99999999999999999998764321 000000011111111 2347889999999999999999987 Q ss_pred eCCCCc Q psy2408 239 DITSHV 244 (298) Q Consensus 239 ~~~~~~ 244 (298) .+.... T Consensus 289 G~~~~p 294 (322) T PLN02396 289 GFVYNP 294 (322) T ss_pred eeEEcC Confidence 766543 No 15 >PRK14103 trans-aconitate 2-methyltransferase; Provisional Probab=99.90 E-value=1.5e-21 Score=163.10 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=118.0 Q ss_pred HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC Q psy2408 75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD 153 (298) Q Consensus 75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 153 (298) +....+++.+...++.+|||+|||+|.++..+++.. +++|+|+|+|+.|++.+++. +++++++|+.+++ + T Consensus 16 ~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~ 86 (255) T PRK14103 16 RPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-P 86 (255) T ss_pred CHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-C Confidence 445677888888888999999999999999999863 67999999999999999753 4789999998874 4 Q ss_pred CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHH------H---hh---cccCCCCc Q psy2408 154 NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYV------K---KN---IHSNFILV 220 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~------~---~~---~~~~~~~~ 220 (298) +++||+|+++.+++|++++ .+++++.++|+|||++++..+....... ........ . .. ....+.+. T Consensus 87 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 165 (255) T PRK14103 87 KPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPS-HAAVRALARREPWAKLLRDIPFRVGAVVQTP 165 (255) T ss_pred CCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChh-HHHHHHHhccCchhHHhcccccccCcCCCCH Confidence 6799999999999999999 9999999999999999987543211111 01111110 0 00 11235678 Q ss_pred chHHHHHHhCCCcEEEEE Q psy2408 221 EHYPDLLNKSGFELIKID 238 (298) Q Consensus 221 ~~~~~~l~~~Gf~~~~~~ 238 (298) +++.++|+++||++.... T Consensus 166 ~~~~~~l~~aGf~v~~~~ 183 (255) T PRK14103 166 AGYAELLTDAGCKVDAWE 183 (255) T ss_pred HHHHHHHHhCCCeEEEEe Confidence 999999999999865433 No 16 >PRK08317 hypothetical protein; Provisional Probab=99.89 E-value=1.6e-20 Score=155.70 Aligned_cols=167 Identities=26% Similarity=0.357 Sum_probs=128.2 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP 151 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~ 151 (298) ....+.+++.+.+.++.+|||+|||+|.++..++... .++++++|+|+.+++.++++... ...++++...|+..++ T Consensus 5 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~ 82 (241) T PRK08317 5 RRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLP 82 (241) T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCC Confidence 3455667788888899999999999999999999864 46999999999999999988332 2357999999998888 Q ss_pred CCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCC---CChhHHHHHHHhh--cccCCCCcchHHH Q psy2408 152 FDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVS---KNDNKFKEYVKKN--IHSNFILVEHYPD 225 (298) Q Consensus 152 ~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~ 225 (298) +++++||+|++..+++|++++ .+++++.++|+|||++++.++.+.... ............. ..........+.+ T Consensus 83 ~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (241) T PRK08317 83 FPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPG 162 (241) T ss_pred CCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHH Confidence 878899999999999999999 999999999999999999886543211 1111222222111 1223445568999 Q ss_pred HHHhCCCcEEEEEeCCC Q psy2408 226 LLNKSGFELIKIDDITS 242 (298) Q Consensus 226 ~l~~~Gf~~~~~~~~~~ 242 (298) +|+++||..+....... T Consensus 163 ~l~~aGf~~~~~~~~~~ 179 (241) T PRK08317 163 LFREAGLTDIEVEPYTL 179 (241) T ss_pred HHHHcCCCceeEEEEEE Confidence 99999999887665443 No 17 >PRK10258 biotin biosynthesis protein BioC; Provisional Probab=99.89 E-value=6.4e-22 Score=165.04 Aligned_cols=184 Identities=20% Similarity=0.284 Sum_probs=139.9 Q ss_pred chhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc Q psy2408 31 GKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK 110 (298) Q Consensus 31 ~~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~ 110 (298) .++.++..|+.. +..|+.. ...+....+.+++.+...++.+|||+|||+|.++..++. . T Consensus 5 ~k~~i~~~F~~a-a~~Y~~~-------------------~~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~-~ 63 (251) T PRK10258 5 NKQAIAAAFGRA-AAHYEQH-------------------AELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRE-R 63 (251) T ss_pred CHHHHHHHHHHH-HHhHhHH-------------------HHHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHH-c Confidence 356788888887 7777753 234567777788888766678999999999999998887 5 Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEE Q psy2408 111 GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILT 189 (298) Q Consensus 111 ~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~ 189 (298) +.+++++|+|+.|++.++++.. ...++++|+..+|+++++||+|+++.++++++++ .++.++.++|+|||.++ T Consensus 64 ~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~ 137 (251) T PRK10258 64 GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVA 137 (251) T ss_pred CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEE Confidence 7899999999999999987742 2568999999988888899999999999999999 99999999999999999 Q ss_pred EEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCC Q psy2408 190 LTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITS 242 (298) Q Consensus 190 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 242 (298) ++.+...........+...........+.+.+++.+++...|+.. +.+.+.. T Consensus 138 ~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~ 189 (251) T PRK10258 138 FTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQH-HIQPITL 189 (251) T ss_pred EEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCcee-eeeEEEE Confidence 988764321110011111111223345788999999999888864 3343333 No 18 >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional Probab=99.88 E-value=2.4e-21 Score=165.83 Aligned_cols=166 Identities=22% Similarity=0.236 Sum_probs=123.9 Q ss_pred HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC Q psy2408 77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS 156 (298) Q Consensus 77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 156 (298) ...++..+...++.+|||||||+|..+..++......|+|+|+|+.++..++......+...++.++.+|+.++|+ .++ T Consensus 111 ~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~ 189 (322) T PRK15068 111 WDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKA 189 (322) T ss_pred HHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCC Confidence 4455666655578899999999999999999854457999999999988765543333333579999999999987 689 Q ss_pred eeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChh-HHHHHHHhhcccCCCCcchHHHHHHhCCCcE Q psy2408 157 FDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDN-KFKEYVKKNIHSNFILVEHYPDLLNKSGFEL 234 (298) Q Consensus 157 fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 234 (298) ||+|++..+++|..++ .++++++++|+|||.+++.++.......... ....+..........+.+++..+|+++||++ T Consensus 190 FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~ 269 (322) T PRK15068 190 FDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKD 269 (322) T ss_pred cCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCce Confidence 9999999999999999 9999999999999999998665433221000 0011111111112357889999999999999 Q ss_pred EEEEeCCCC Q psy2408 235 IKIDDITSH 243 (298) Q Consensus 235 ~~~~~~~~~ 243 (298) ++..+.+.. T Consensus 270 i~~~~~~~t 278 (322) T PRK15068 270 VRIVDVSVT 278 (322) T ss_pred EEEEeCCCC Confidence 998877654 No 19 >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] Probab=99.88 E-value=9.9e-23 Score=161.18 Aligned_cols=153 Identities=24% Similarity=0.310 Sum_probs=123.4 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI 166 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 166 (298) -++.+|||+|||-|.++..+|+ .|+.|+|+|+++.+++.|+..+.+.++. +.+.+..+.++....++||+|+|++++ T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr-~Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cmEVl 134 (243) T COG2227 58 LPGLRVLDVGCGGGILSEPLAR-LGASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCMEVL 134 (243) T ss_pred CCCCeEEEecCCccHhhHHHHH-CCCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEhhHH Confidence 3789999999999999999999 7899999999999999999999988864 778888887775445899999999999 Q ss_pred cccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHH--------HHHhhc--ccCCCCcchHHHHHHhCCCcEE Q psy2408 167 FHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKE--------YVKKNI--HSNFILVEHYPDLLNKSGFELI 235 (298) Q Consensus 167 ~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~--------~~~~~~--~~~~~~~~~~~~~l~~~Gf~~~ 235 (298) +|++++ .+++.+.+++||||.+++++++...... ...- +..... ...+..++++..++..+|+.+. T Consensus 135 EHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~---~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~ 211 (243) T COG2227 135 EHVPDPESFLRACAKLVKPGGILFLSTINRTLKAY---LLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKII 211 (243) T ss_pred HccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHH---HHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEE Confidence 999999 9999999999999999999988433111 1110 111111 1346678899999999999988 Q ss_pred EEEeCCCCcc Q psy2408 236 KIDDITSHVM 245 (298) Q Consensus 236 ~~~~~~~~~~ 245 (298) +...+..... T Consensus 212 ~~~g~~y~p~ 221 (243) T COG2227 212 DRKGLTYNPL 221 (243) T ss_pred eecceEeccc Confidence 8877665543 No 20 >TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria. Probab=99.87 E-value=7.9e-21 Score=160.87 Aligned_cols=169 Identities=19% Similarity=0.138 Sum_probs=123.8 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD 153 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 153 (298) +-....++..+...++.+|||+|||+|..+..++......|+|+|+|+.|+.+++......+...++.+...++.+++.. T Consensus 107 ~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~ 186 (314) T TIGR00452 107 DIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL 186 (314) T ss_pred HHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC Confidence 34445677777767889999999999999988887433479999999999987644333222234688889999888753 Q ss_pred CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChh-HHHHHHHhhcccCCCCcchHHHHHHhCC Q psy2408 154 NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDN-KFKEYVKKNIHSNFILVEHYPDLLNKSG 231 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~G 231 (298) ++||+|+++.+++|.+++ .+|++++++|+|||.|++.+........... ...............+..++..+|+++| T Consensus 187 -~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aG 265 (314) T TIGR00452 187 -YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVG 265 (314) T ss_pred -CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCC Confidence 589999999999999999 9999999999999999998765433221000 0001111111123457889999999999 Q ss_pred CcEEEEEeCCCC Q psy2408 232 FELIKIDDITSH 243 (298) Q Consensus 232 f~~~~~~~~~~~ 243 (298) |+.+++.+.... T Consensus 266 F~~V~i~~~~~t 277 (314) T TIGR00452 266 FENFRILDVLKT 277 (314) T ss_pred CeEEEEEeccCC Confidence 999988776554 No 21 >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Probab=99.87 E-value=1.1e-20 Score=156.66 Aligned_cols=200 Identities=26% Similarity=0.356 Sum_probs=148.7 Q ss_pred CchhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh Q psy2408 30 KGKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA 109 (298) Q Consensus 30 ~~~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~ 109 (298) ...+.++++|+.. +..|+.+.. ...+ . ........++..+...++.+|||+|||+|..+..++.. T Consensus 8 ~~~~~~~~~~~~~-~~~y~~~~~-~~~~--~-----------~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~ 72 (239) T PRK00216 8 EKQEKVAEMFDSI-APKYDLMND-LLSF--G-----------LHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKA 72 (239) T ss_pred cchHHHHHHHHHh-hhhHHHHHH-HHhc--C-----------CcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHH Confidence 3466888999998 888875311 0000 0 11233445566666667889999999999999999887 Q ss_pred cC--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCc Q psy2408 110 KG--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGS 186 (298) Q Consensus 110 ~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG 186 (298) .+ .+++++|+++.+++.+++++...++..++.++..|+.+.+++.++||+|++..+++++.++ .+++++.++|+||| T Consensus 73 ~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG 152 (239) T PRK00216 73 VGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGG 152 (239) T ss_pred cCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCc Confidence 53 8999999999999999999877666667999999999887777899999999999999999 99999999999999 Q ss_pred EEEEEeCCCCCCCCChhHHHHHH--------Hh-------------hcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcc Q psy2408 187 ILTLTDLPLLSVSKNDNKFKEYV--------KK-------------NIHSNFILVEHYPDLLNKSGFELIKIDDITSHVM 245 (298) Q Consensus 187 ~l~i~~~~~~~~~~~~~~~~~~~--------~~-------------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~ 245 (298) .+++.+........ ........ .. .....+++.+++.++|+++||.++.......+.. T Consensus 153 ~li~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~ 231 (239) T PRK00216 153 RLVILEFSKPTNPP-LKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIV 231 (239) T ss_pred EEEEEEecCCCchH-HHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcE Confidence 99998775433211 00000000 00 0012356788999999999999999887766544 No 22 >PLN02490 MPBQ/MSBQ methyltransferase Probab=99.87 E-value=1e-20 Score=161.37 Aligned_cols=160 Identities=22% Similarity=0.288 Sum_probs=124.5 Q ss_pred HHHHHHHHhCCC-CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC Q psy2408 75 KLSRIMINKTSI-TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF 152 (298) Q Consensus 75 ~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 152 (298) .+...+++.+.+ .++.+|||+|||+|..+..+++.. +.+|+++|+|+.|++.++++... .+++++.+|+.++++ T Consensus 99 ~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~ 174 (340) T PLN02490 99 DMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPF 174 (340) T ss_pred HHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCC Confidence 344445565544 467899999999999999888764 57999999999999999987542 358899999999888 Q ss_pred CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCC Q psy2408 153 DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSG 231 (298) Q Consensus 153 ~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 231 (298) ++++||+|++..++++++++ .+++++.++|+|||++++.+...... ........ ....+.+.+++.++|+++| T Consensus 175 ~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~-----~~~r~~~~-~~~~~~t~eEl~~lL~~aG 248 (340) T PLN02490 175 PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTF-----WLSRFFAD-VWMLFPKEEEYIEWFTKAG 248 (340) T ss_pred CCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcch-----hHHHHhhh-hhccCCCHHHHHHHHHHCC Confidence 88899999999999999999 99999999999999998876543211 11111111 1122457899999999999 Q ss_pred CcEEEEEeCCCCc Q psy2408 232 FELIKIDDITSHV 244 (298) Q Consensus 232 f~~~~~~~~~~~~ 244 (298) |+.++..++.... T Consensus 249 F~~V~i~~i~~~~ 261 (340) T PLN02490 249 FKDVKLKRIGPKW 261 (340) T ss_pred CeEEEEEEcChhh Confidence 9999988765543 No 23 >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed Probab=99.86 E-value=4.2e-20 Score=155.90 Aligned_cols=153 Identities=24% Similarity=0.313 Sum_probs=123.7 Q ss_pred CCCCCCCeEEEeCCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEE Q psy2408 84 TSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGW 161 (298) Q Consensus 84 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~ 161 (298) ..+.++.+|||+|||+|..+..+++..+ .+|+++|+|+.+++.|+++....++. +++++.+|+.++++++++||+|+ T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi 151 (272) T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVII 151 (272) T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEE Confidence 3567899999999999998887777543 47999999999999999998887764 78999999999888888999999 Q ss_pred ecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh--hcccCCCCcchHHHHHHhCCCcEEEEE Q psy2408 162 FFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK--NIHSNFILVEHYPDLLNKSGFELIKID 238 (298) Q Consensus 162 ~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 238 (298) +..++++.++. .+++++.++|+|||++++.++......+ ......... .......+..++.++|+++||..+.+. T Consensus 152 ~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~ 229 (272) T PRK11873 152 SNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELP--EEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQ 229 (272) T ss_pred EcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCC--HHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEE Confidence 99999999998 9999999999999999999877655433 222111111 112345678899999999999988765 Q ss_pred e Q psy2408 239 D 239 (298) Q Consensus 239 ~ 239 (298) . T Consensus 230 ~ 230 (272) T PRK11873 230 P 230 (272) T ss_pred e Confidence 4 No 24 >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C .... Probab=99.85 E-value=2.3e-21 Score=150.75 Aligned_cols=137 Identities=32% Similarity=0.477 Sum_probs=106.9 Q ss_pred CCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccc Q psy2408 86 ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFES 165 (298) Q Consensus 86 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 165 (298) ..++.+|||+|||+|.++..+++ .+.+++|+|+|+.+++. .+......+....+.++++||+|+++.+ T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161) T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAK-RGFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161) T ss_dssp TTTTSEEEEESSTTSHHHHHHHH-TTSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEEEEESS T ss_pred cCCCCEEEEEcCCCCHHHHHHHH-hCCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhHhhHHH Confidence 46788999999999999999977 57799999999999988 1244444444444456789999999999 Q ss_pred ccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHH-Hh--hcccCCCCcchHHHHHHhCCCcEEE Q psy2408 166 IFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYV-KK--NIHSNFILVEHYPDLLNKSGFELIK 236 (298) Q Consensus 166 l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~~~Gf~~~~ 236 (298) ++|++++ .+|+++.++|||||++++.++....... ..+..+. .. ..+..+++.+++..+++++||++++ T Consensus 88 l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161) T PF13489_consen 88 LEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDPSP--RSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161) T ss_dssp GGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHH--HHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE T ss_pred HhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcchhh--hHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE Confidence 9999999 9999999999999999999887532111 1111111 11 1355788999999999999999886 No 25 >PRK05785 hypothetical protein; Provisional Probab=99.85 E-value=2.8e-20 Score=151.79 Aligned_cols=189 Identities=11% Similarity=0.117 Sum_probs=129.0 Q ss_pred chhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc Q psy2408 31 GKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK 110 (298) Q Consensus 31 ~~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~ 110 (298) ..+.+++.||.. ++.||.... .+.++ . ... -...+.+.+.... .++.+|||+|||+|..+..+++.. T Consensus 7 ~~~~v~~~f~~i-A~~YD~~n~-~~s~g--~----~~~---wr~~~~~~l~~~~--~~~~~VLDlGcGtG~~~~~l~~~~ 73 (226) T PRK05785 7 TWEELQEAYNKI-PKAYDRANR-FISFN--Q----DVR---WRAELVKTILKYC--GRPKKVLDVAAGKGELSYHFKKVF 73 (226) T ss_pred cHHHHHHHHHhh-hHHHHHhhh-hccCC--C----cHH---HHHHHHHHHHHhc--CCCCeEEEEcCCCCHHHHHHHHhc Confidence 456788999999 999987521 11110 0 000 1122333333332 246799999999999999998865 Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEE Q psy2408 111 GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILT 189 (298) Q Consensus 111 ~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~ 189 (298) +.+|+|+|+|++|++.|++. ..++++|+.++|+++++||+|++..+++|++++ .++++++|+|||. ++ T Consensus 74 ~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~--~~ 142 (226) T PRK05785 74 KYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ--VG 142 (226) T ss_pred CCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc--eE Confidence 67999999999999999764 235789999999999999999999999999999 9999999999994 22 Q ss_pred EEeCCCCCCCCChhHHHHHHHh---------------------hcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcc Q psy2408 190 LTDLPLLSVSKNDNKFKEYVKK---------------------NIHSNFILVEHYPDLLNKSGFELIKIDDITSHVM 245 (298) Q Consensus 190 i~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~ 245 (298) +.++..+.... ...+..++.. .....+.+.+++.++++++| ..+..+.++.++. T Consensus 143 ile~~~p~~~~-~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~~G~~ 217 (226) T PRK05785 143 FIAMGKPDNVI-KRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKVYEERGLGLV 217 (226) T ss_pred EEEeCCCCcHH-HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceEEEEccccEE Confidence 33443222111 0111111000 01234677899999999974 6677777776654 No 26 >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Probab=99.85 E-value=7.8e-20 Score=151.69 Aligned_cols=108 Identities=19% Similarity=0.301 Sum_probs=95.3 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEec Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFF 163 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~ 163 (298) .++.+|||+|||+|..+..+++. .+++++|+|+|+.|++.|++++...+...+++++++|+.+++++ .+|+|+++ T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~ 132 (247) T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLN 132 (247) T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehh Confidence 57789999999999999888873 46899999999999999999998877777899999999988754 59999999 Q ss_pred ccccccChH---HHHHHHhhcccCCcEEEEEeCCCC Q psy2408 164 ESIFHMNHS---AALNEARRVLKSGSILTLTDLPLL 196 (298) Q Consensus 164 ~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~ 196 (298) .+++|+++. .++++++++|+|||.+++.+.... T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~ 168 (247) T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 168 (247) T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCC Confidence 999999754 899999999999999999985543 No 27 >PRK11207 tellurite resistance protein TehB; Provisional Probab=99.85 E-value=6.3e-20 Score=146.93 Aligned_cols=147 Identities=17% Similarity=0.204 Sum_probs=113.8 Q ss_pred HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCee Q psy2408 79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFD 158 (298) Q Consensus 79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 158 (298) .+++.+...++.+|||+|||+|..+..+++ .+.+|+|+|+|+.+++.+++.....++. ++++.+.|+.+++++ ++|| T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~-~g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD 97 (197) T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAA-NGFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTFD-GEYD 97 (197) T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCcC-CCcC Confidence 344555556778999999999999999998 4789999999999999999998887774 588999999887664 6799 Q ss_pred EEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEE Q psy2408 159 GGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELI 235 (298) Q Consensus 159 ~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 235 (298) +|++..++++++.. .+++++.++|+|||++++.........+. ....+..++.+++.+.++ ||+++ T Consensus 98 ~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~---------~~~~~~~~~~~el~~~~~--~~~~~ 166 (197) T PRK11207 98 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC---------TVGFPFAFKEGELRRYYE--GWEMV 166 (197) T ss_pred EEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCC---------CCCCCCccCHHHHHHHhC--CCeEE Confidence 99999999888743 99999999999999976654332221110 001234467788888887 89887 Q ss_pred EEEe Q psy2408 236 KIDD 239 (298) Q Consensus 236 ~~~~ 239 (298) ...+ T Consensus 167 ~~~~ 170 (197) T PRK11207 167 KYNE 170 (197) T ss_pred EeeC Confidence 7643 No 28 >PRK01683 trans-aconitate 2-methyltransferase; Provisional Probab=99.85 E-value=3.5e-19 Score=149.19 Aligned_cols=157 Identities=16% Similarity=0.194 Sum_probs=119.0 Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC Q psy2408 72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL 150 (298) Q Consensus 72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~ 150 (298) .+....+.++..+.+.++.+|||||||+|.++..+++.. +++|+|+|+|+.|++.++++. .++.++.+|+..+ T Consensus 15 ~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~ 88 (258) T PRK01683 15 ERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASW 88 (258) T ss_pred HhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhcc Confidence 345567788888888889999999999999999999864 679999999999999998774 3588999999876 Q ss_pred CCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHH---------HHHhh--cccCCC Q psy2408 151 PFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKE---------YVKKN--IHSNFI 218 (298) Q Consensus 151 ~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~---------~~~~~--~~~~~~ 218 (298) . +.++||+|+++.+++|++++ .+++++.++|+|||.+++..+....... ...... ..... ....+. T Consensus 89 ~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 166 (258) T PRK01683 89 Q-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPS-HVLMREVAENGPWEQNLPDRGARRAPLP 166 (258) T ss_pred C-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHH-HHHHHHHHccCchHHHhccccccCcCCC Confidence 4 45699999999999999999 9999999999999999987433211111 011111 11100 112345 Q ss_pred CcchHHHHHHhCCCcEEE Q psy2408 219 LVEHYPDLLNKSGFELIK 236 (298) Q Consensus 219 ~~~~~~~~l~~~Gf~~~~ 236 (298) +..++.+++.++|+.+.. T Consensus 167 ~~~~~~~~l~~~g~~v~~ 184 (258) T PRK01683 167 PPHAYYDALAPAACRVDI 184 (258) T ss_pred CHHHHHHHHHhCCCceee Confidence 667888999999987543 No 29 >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A .... Probab=99.84 E-value=1.8e-20 Score=144.28 Aligned_cols=141 Identities=29% Similarity=0.455 Sum_probs=110.9 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--CCCCCeeEEEe Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--FDNDSFDGGWF 162 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~ 162 (298) ..+.+|||+|||+|..+..+++. .+.+++|+|+|+.|++.|+..++..+++ +++|+++|+.+++ ++ ++||+|++ T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~-~~~D~I~~ 79 (152) T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE-EKFDIIIS 79 (152) T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS-TTEEEEEE T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC-CCeeEEEE Confidence 46789999999999999999953 3689999999999999999999998886 8999999999976 55 79999999 Q ss_pred cccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHH--hhcccCCC---CcchHHHHHHhCC Q psy2408 163 FESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVK--KNIHSNFI---LVEHYPDLLNKSG 231 (298) Q Consensus 163 ~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~l~~~G 231 (298) ..+++++.++ .+++++.++|+++|.+++.++....... ........ ........ ..+++..+|+++| T Consensus 80 ~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag 152 (152) T PF13847_consen 80 NGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHNDELP--EQLEELMNLYSEVWSMIYIGNDKEEWKYILEEAG 152 (152) T ss_dssp ESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHHHH--HHHHHHHHHHHHHHHHCC---CCCGHHHHHHHTT T ss_pred cCchhhccCHHHHHHHHHHHcCCCcEEEEEECChHHHHH--HHHHHHHHHHHHHhhhhhcccCHHHHHHHHHhcC Confidence 9999999999 9999999999999999998877222111 11111110 00011111 7888999999887 No 30 >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. Probab=99.84 E-value=7.8e-20 Score=149.88 Aligned_cols=167 Identities=29% Similarity=0.407 Sum_probs=128.2 Q ss_pred HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC Q psy2408 75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF 152 (298) Q Consensus 75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 152 (298) .....++..+...++.+|||+|||+|..+..+++..+ .+++++|+++.+++.++++.. ...+++++.+|+.+.++ T Consensus 26 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~ 102 (223) T TIGR01934 26 LWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF 102 (223) T ss_pred HHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC Confidence 3445566666666889999999999999999998754 599999999999999998875 33568999999998887 Q ss_pred CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHH-------h------------- Q psy2408 153 DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVK-------K------------- 211 (298) Q Consensus 153 ~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-------~------------- 211 (298) +.++||+|++..++++++++ .+++++.++|+|||++++.+.................. . T Consensus 103 ~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (223) T TIGR01934 103 EDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLP 182 (223) T ss_pred CCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHH Confidence 77899999999999999999 99999999999999999987754332110000000000 0 Q ss_pred hcccCCCCcchHHHHHHhCCCcEEEEEeCCCCc Q psy2408 212 NIHSNFILVEHYPDLLNKSGFELIKIDDITSHV 244 (298) Q Consensus 212 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~ 244 (298) .....+.+.++|..+|+++||+++....+..+. T Consensus 183 ~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~ 215 (223) T TIGR01934 183 ESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGV 215 (223) T ss_pred HHHHhCCCHHHHHHHHHHcCCccceeeeeecce Confidence 001235678899999999999999888776653 No 31 >KOG1270|consensus Probab=99.84 E-value=4.7e-21 Score=152.57 Aligned_cols=151 Identities=26% Similarity=0.328 Sum_probs=116.4 Q ss_pred CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCC-----ceEEEECCCCCCCCCCCCeeEEEec Q psy2408 89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLD-----KVNFLHGDALNLPFDNDSFDGGWFF 163 (298) Q Consensus 89 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~-----~i~~~~~d~~~~~~~~~~fD~V~~~ 163 (298) |++|||+|||+|.++..|++ .|+.|+|+|+++.|++.|++......+.. ++++.+.|++... +.||+|+|+ T Consensus 90 g~~ilDvGCGgGLLSepLAr-lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282) T KOG1270|consen 90 GMKILDVGCGGGLLSEPLAR-LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282) T ss_pred CceEEEeccCccccchhhHh-hCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH Confidence 58899999999999999999 79999999999999999999944332222 3667777877763 559999999 Q ss_pred ccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCC-----ChhHHHHHHHhh--cccCCCCcchHHHHHHhCCCcEE Q psy2408 164 ESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSK-----NDNKFKEYVKKN--IHSNFILVEHYPDLLNKSGFELI 235 (298) Q Consensus 164 ~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~Gf~~~ 235 (298) .+++|+.++ .++..+.+.|+|||++++++.+..-... ..+....+.+.. ....+.++.++..+++.+|+++. T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~ 245 (282) T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVN 245 (282) T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchh Confidence 999999999 9999999999999999999887543111 001111111111 12357889999999999999988 Q ss_pred EEEeCCCC Q psy2408 236 KIDDITSH 243 (298) Q Consensus 236 ~~~~~~~~ 243 (298) .+...... T Consensus 246 ~v~G~~y~ 253 (282) T KOG1270|consen 246 DVVGEVYN 253 (282) T ss_pred hhhccccc Confidence 77655444 No 32 >TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. Probab=99.84 E-value=9.7e-20 Score=150.70 Aligned_cols=147 Identities=16% Similarity=0.141 Sum_probs=114.2 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEec Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFF 163 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~ 163 (298) .++.+|||+|||+|..+..+++. ++++++|+|+|+.|++.|++++...+...+++++++|+.+++++ .+|+|++. T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239) T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239) T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee Confidence 47789999999999999999875 36799999999999999999988766656799999999988764 58999999 Q ss_pred ccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh-------------------hcccCCCCcc Q psy2408 164 ESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK-------------------NIHSNFILVE 221 (298) Q Consensus 164 ~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~ 221 (298) .+++|+++. .++++++++|+|||.+++.+................... .....+.+.+ T Consensus 130 ~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~ 209 (239) T TIGR00740 130 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIE 209 (239) T ss_pred cchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHH Confidence 999999754 999999999999999999987543322111111111100 0123467888 Q ss_pred hHHHHHHhCCCcEE Q psy2408 222 HYPDLLNKSGFELI 235 (298) Q Consensus 222 ~~~~~l~~~Gf~~~ 235 (298) ++.++++++||..+ T Consensus 210 ~~~~~l~~aGF~~~ 223 (239) T TIGR00740 210 THKARLKNVGFSHV 223 (239) T ss_pred HHHHHHHHcCCchH Confidence 99999999999743 No 33 >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... Probab=99.84 E-value=2e-20 Score=132.10 Aligned_cols=94 Identities=45% Similarity=0.626 Sum_probs=83.3 Q ss_pred EEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH Q psy2408 93 IDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS 172 (298) Q Consensus 93 LDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~ 172 (298) ||+|||+|..+..+++..+.+|+++|+|+.+++.++++.... ++.++++|+.++|+++++||+|++..+++|++++ T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~ 76 (95) T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP 76 (95) T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHH T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeeccCH Confidence 899999999999999965789999999999999999987653 3669999999999999999999999999999888 Q ss_pred -HHHHHHhhcccCCcEEEE Q psy2408 173 -AALNEARRVLKSGSILTL 190 (298) Q Consensus 173 -~~l~~~~r~LkpgG~l~i 190 (298) .+++++.|+|||||+++| T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95) T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95) T ss_dssp HHHHHHHHHHEEEEEEEEE T ss_pred HHHHHHHHHHcCcCeEEeC Confidence 999999999999999986 No 34 >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. Probab=99.83 E-value=8.1e-20 Score=149.19 Aligned_cols=167 Identities=23% Similarity=0.318 Sum_probs=126.1 Q ss_pred HHHHHHHHHHHHhCC--CCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC Q psy2408 71 QGSDKLSRIMINKTS--ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL 148 (298) Q Consensus 71 ~~~~~~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~ 148 (298) .....+...+++.+. ..++.+|||+|||+|.++..++. .+.+++|+|+|+.++..|++++...+...++.+.+.|+. T Consensus 36 ~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~ 114 (219) T TIGR02021 36 EGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAK-RGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLL 114 (219) T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChh Confidence 445566777777776 56788999999999999999988 477999999999999999999987776567999999998 Q ss_pred CCCCCCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh------hcccCCCC Q psy2408 149 NLPFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK------NIHSNFIL 219 (298) Q Consensus 149 ~~~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 219 (298) .++ ++||+|++..+++|++.. .+++++.+++++++.+.+.... ... .....+... .....+++ T Consensus 115 ~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~ 186 (219) T TIGR02021 115 SLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKT--AWL---AFLKMIGELFPGSSRATSAYLHP 186 (219) T ss_pred hCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCc--hHH---HHHHHHHhhCcCcccccceEEec Confidence 865 789999999999998754 8899999999877655543211 100 111111111 11124568 Q ss_pred cchHHHHHHhCCCcEEEEEeCCCCccc Q psy2408 220 VEHYPDLLNKSGFELIKIDDITSHVMP 246 (298) Q Consensus 220 ~~~~~~~l~~~Gf~~~~~~~~~~~~~~ 246 (298) .+++.++++++||.++.......+... T Consensus 187 ~~~~~~~l~~~Gf~v~~~~~~~~~~~~ 213 (219) T TIGR02021 187 MTDLERALGELGWKIVREGLVSTGFYN 213 (219) T ss_pred HHHHHHHHHHcCceeeeeecccccchh Confidence 899999999999999998877666544 No 35 >TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB Probab=99.83 E-value=3.2e-19 Score=142.60 Aligned_cols=147 Identities=12% Similarity=0.120 Sum_probs=112.9 Q ss_pred HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCee Q psy2408 79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFD 158 (298) Q Consensus 79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 158 (298) .+++.+...++.+|||+|||+|..+..+++ .+.+|+|+|+|+.+++.+++++...++. +.+...|+...+++ ++|| T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~-~g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~-~~fD 96 (195) T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSL-AGYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALN-EDYD 96 (195) T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHH-CCCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcccc-CCCC Confidence 344445555667999999999999999998 5789999999999999999998877763 77888888766654 6899 Q ss_pred EEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEE Q psy2408 159 GGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELI 235 (298) Q Consensus 159 ~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 235 (298) +|+++.++++++.. .+++++.++|+|||++++.+.......+ . ....+..++.+++.+.+. +|+++ T Consensus 97 ~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~--~-------~~~~~~~~~~~el~~~f~--~~~~~ 165 (195) T TIGR00477 97 FIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYP--C-------HMPFSFTFKEDELRQYYA--DWELL 165 (195) T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCC--C-------CCCcCccCCHHHHHHHhC--CCeEE Confidence 99999999988643 9999999999999997766543322211 0 011234577888988886 58888 Q ss_pred EEEeC Q psy2408 236 KIDDI 240 (298) Q Consensus 236 ~~~~~ 240 (298) ...+. T Consensus 166 ~~~e~ 170 (195) T TIGR00477 166 KYNEA 170 (195) T ss_pred Eeecc Confidence 77643 No 36 >KOG4300|consensus Probab=99.83 E-value=1.5e-19 Score=138.50 Aligned_cols=166 Identities=17% Similarity=0.174 Sum_probs=124.6 Q ss_pred HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceE-EEECCCCCCC-CC Q psy2408 76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVN-FLHGDALNLP-FD 153 (298) Q Consensus 76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~-~~~~d~~~~~-~~ 153 (298) +...+...+.......|||+|||||..-.+.--.++++||++|+++.|-+.+..++.+.. +.++. |++++.+++| ++ T Consensus 64 lFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k-~~~~~~fvva~ge~l~~l~ 142 (252) T KOG4300|consen 64 LFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK-PLQVERFVVADGENLPQLA 142 (252) T ss_pred HHhhhHHHhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc-CcceEEEEeechhcCcccc Confidence 333333344444455789999999999888776578999999999999999999998874 45666 9999999997 78 Q ss_pred CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh----hcccCCCCcchHHHHHH Q psy2408 154 NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK----NIHSNFILVEHYPDLLN 228 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~ 228 (298) +++||.|++..+++...++ +.|+++.|+|+|||++++.+............+...... ......++++.+ +.|+ T Consensus 143 d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd~~-e~Le 221 (252) T KOG4300|consen 143 DGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRDTG-ELLE 221 (252) T ss_pred cCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehhHH-HHhh Confidence 9999999999999999999 999999999999999999998866544322222222222 111234555544 5678 Q ss_pred hCCCcEEEEEeCCCC Q psy2408 229 KSGFELIKIDDITSH 243 (298) Q Consensus 229 ~~Gf~~~~~~~~~~~ 243 (298) .+-|...+......+ T Consensus 222 da~f~~~~~kr~~~~ 236 (252) T KOG4300|consen 222 DAEFSIDSCKRFNFG 236 (252) T ss_pred hcccccchhhcccCC Confidence 888988776654433 No 37 >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A .... Probab=99.82 E-value=2.7e-19 Score=130.45 Aligned_cols=104 Identities=36% Similarity=0.559 Sum_probs=89.5 Q ss_pred CCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC-CCCCCCCCCeeEEEecc- Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA-LNLPFDNDSFDGGWFFE- 164 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~fD~V~~~~- 164 (298) |+.+|||+|||+|..+..+++. .+++++|+|+|+.+++.+++++...+..+++++++.|+ ..... .+.||+|++.. T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112) T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112) T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC Confidence 5789999999999999999995 68899999999999999999997778888999999999 34333 36799999998 Q ss_pred cccccC---hH-HHHHHHhhcccCCcEEEEEe Q psy2408 165 SIFHMN---HS-AALNEARRVLKSGSILTLTD 192 (298) Q Consensus 165 ~l~~~~---~~-~~l~~~~r~LkpgG~l~i~~ 192 (298) +++++. +. .+++++.+.|+|||++++.+ T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112) T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112) T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE Confidence 554333 33 99999999999999999975 No 38 >TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. Probab=99.82 E-value=2.8e-18 Score=142.16 Aligned_cols=157 Identities=23% Similarity=0.336 Sum_probs=120.6 Q ss_pred HHHHHHHHHHHhCCC---CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC Q psy2408 72 GSDKLSRIMINKTSI---TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA 147 (298) Q Consensus 72 ~~~~~~~~l~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~ 147 (298) .+..+...+++.+.. ..+.+|||+|||+|.++..+++.. ..+++++|+|+.+++.++.... .++.++.+|+ T Consensus 15 ~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~ 89 (240) T TIGR02072 15 IQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDA 89 (240) T ss_pred HHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecch Confidence 344444555544432 345799999999999999998864 4679999999999999987754 3688999999 Q ss_pred CCCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHH Q psy2408 148 LNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDL 226 (298) Q Consensus 148 ~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (298) .+.++++++||+|++..+++|+.++ .++.++.++|+|||.+++.++..... ......... ....+.+.+++.++ T Consensus 90 ~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~ 164 (240) T TIGR02072 90 EKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTL----HELRQSFGQ-HGLRYLSLDELKAL 164 (240) T ss_pred hhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCH----HHHHHHHHH-hccCCCCHHHHHHH Confidence 9988888899999999999999999 99999999999999999987654321 111221211 23467788899999 Q ss_pred HHhCCCcEEEEEe Q psy2408 227 LNKSGFELIKIDD 239 (298) Q Consensus 227 l~~~Gf~~~~~~~ 239 (298) +.++ |..+.... T Consensus 165 l~~~-f~~~~~~~ 176 (240) T TIGR02072 165 LKNS-FELLTLEE 176 (240) T ss_pred HHHh-cCCcEEEE Confidence 9988 87665543 No 39 >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. Probab=99.82 E-value=1.6e-18 Score=148.60 Aligned_cols=159 Identities=14% Similarity=0.253 Sum_probs=124.0 Q ss_pred HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC Q psy2408 76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN 154 (298) Q Consensus 76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 154 (298) ....+++.+.++++.+|||||||+|.++..+++.. +.+++++|. +.+++.+++++...++.++++++.+|+.+.+++ T Consensus 137 ~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~- 214 (306) T TIGR02716 137 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP- 214 (306) T ss_pred HHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC- Confidence 45567777778888999999999999999999874 679999997 789999999999999888999999999876554 Q ss_pred CCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCCh-hHHHHHHHhh----cccCCCCcchHHHH Q psy2408 155 DSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKND-NKFKEYVKKN----IHSNFILVEHYPDL 226 (298) Q Consensus 155 ~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~ 226 (298) .+|+|++..+++++.+. .+++++++.|+|||++++.++......... .......... ....+.+.+++.++ T Consensus 215 -~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l 293 (306) T TIGR02716 215 -EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEI 293 (306) T ss_pred -CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHH Confidence 37999999999988765 799999999999999999998665433211 1111111100 11134457899999 Q ss_pred HHhCCCcEEEE Q psy2408 227 LNKSGFELIKI 237 (298) Q Consensus 227 l~~~Gf~~~~~ 237 (298) |+++||+.+.. T Consensus 294 l~~aGf~~v~~ 304 (306) T TIGR02716 294 LESLGYKDVTM 304 (306) T ss_pred HHHcCCCeeEe Confidence 99999997754 No 40 >PLN02585 magnesium protoporphyrin IX methyltransferase Probab=99.81 E-value=1.2e-18 Score=147.87 Aligned_cols=204 Identities=17% Similarity=0.185 Sum_probs=127.5 Q ss_pred ccccCCCCchhhHHhhhcCCcc-cccccccCCceeE--eeccCCCCCCcHHHHHHHHHHHHHHhCCC---CCCCeEEEeC Q psy2408 23 IKENKGNKGKKTVATLYDSPEG-QIGSVLFGGHMHW--GYWDESNSKDNFAQGSDKLSRIMINKTSI---TKGQRFIDIG 96 (298) Q Consensus 23 ~~~~~~~~~~~~~~~~yd~~~~-~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~vLDiG 96 (298) ...+......+.++++||.. + +.|..+++..... ..+.. .. ......+.+++.+.. .++.+|||+| T Consensus 81 ~~~~~~~~~~~~V~~~Fd~~-a~~~w~~iy~~~d~v~~~~l~~---~~----~~~~~v~~~l~~l~~~~~~~~~~VLDlG 152 (315) T PLN02585 81 QAEEVGGDDKEVVREYFNTT-GFERWRKIYGETDEVNKVQLDI---RL----GHAQTVEKVLLWLAEDGSLAGVTVCDAG 152 (315) T ss_pred hhhhhHHHHHHHHHHHhccc-chhhHHHhcCCccccCceeeec---cc----ChHHHHHHHHHHHHhcCCCCCCEEEEec Confidence 33444566788999999986 3 2232333321110 01110 00 112233334444322 2578999999 Q ss_pred CCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC----CCceEEEECCCCCCCCCCCCeeEEEecccccccChH Q psy2408 97 CGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL----LDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS 172 (298) Q Consensus 97 cG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~ 172 (298) ||+|.++..+++ .+.+|+|+|+|+.|++.+++++...+. ..++.+...|+..+ +++||+|++..+++|+++. T Consensus 153 cGtG~~a~~la~-~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~ 228 (315) T PLN02585 153 CGTGSLAIPLAL-EGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQD 228 (315) T ss_pred CCCCHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHH Confidence 999999999998 578999999999999999999876421 13578888887654 4789999999999999876 Q ss_pred ---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhc------ccCCCCcchHHHHHHhCCCcEEEEEeCCCC Q psy2408 173 ---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNI------HSNFILVEHYPDLLNKSGFELIKIDDITSH 243 (298) Q Consensus 173 ---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 243 (298) .+++.+.+ +.++|. ++..... . .. ......+..... ...+++.+++.++|+++||++...+..... T Consensus 229 ~~~~ll~~l~~-l~~g~l-iIs~~p~-~-~~-~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~~~~~~ 303 (315) T PLN02585 229 KADGMIAHLAS-LAEKRL-IISFAPK-T-LY-YDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARREMTATQ 303 (315) T ss_pred HHHHHHHHHHh-hcCCEE-EEEeCCc-c-hH-HHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEEEeecc Confidence 56677765 455544 4443221 1 10 011111111111 123457899999999999998876654433 No 41 >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated Probab=99.80 E-value=1.3e-18 Score=143.43 Aligned_cols=200 Identities=19% Similarity=0.255 Sum_probs=130.6 Q ss_pred CchhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCC---CCCCCeEEEeCCCCCHHHHHH Q psy2408 30 KGKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTS---ITKGQRFIDIGCGFGLSGIRL 106 (298) Q Consensus 30 ~~~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~vLDiGcG~G~~~~~l 106 (298) .....+.++||......++..++... +.. -...+..........++..+. ..++.+|||+|||+|..+..+ T Consensus 8 ~~~~~v~~~~~~~~~~~w~~~y~~~~----~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l 81 (230) T PRK07580 8 EHKSEVRTYFNRTGFDRWARIYSDAP----VSK--VRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPL 81 (230) T ss_pred hchhhhhHHHhhhccchHHHhhCcCc----hhH--HHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHH Confidence 44567888998763355555443311 000 000111122333334444332 356789999999999999999 Q ss_pred HHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH---HHHHHHhhccc Q psy2408 107 AKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AALNEARRVLK 183 (298) Q Consensus 107 ~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~Lk 183 (298) ++ .+.+|+|+|+|+.+++.|++++...+...++++..+|+.. .+++||+|++..+++|++++ .+++++.+.++ T Consensus 82 ~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~ 157 (230) T PRK07580 82 AR-RGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTR 157 (230) T ss_pred HH-cCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcC Confidence 88 4678999999999999999999887765679999999433 35789999999999998766 78888888765 Q ss_pred CCcEEEEEeCCCCCCCCChhHHHHHHHh------hcccCCCCcchHHHHHHhCCCcEEEEEeCCCCc Q psy2408 184 SGSILTLTDLPLLSVSKNDNKFKEYVKK------NIHSNFILVEHYPDLLNKSGFELIKIDDITSHV 244 (298) Q Consensus 184 pgG~l~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~ 244 (298) +++.+.+ ...... ......+... .....+.+..++.++++++||++.....+..+. T Consensus 158 ~~~~i~~--~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~ 219 (230) T PRK07580 158 GSLIFTF--APYTPL---LALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERISSGF 219 (230) T ss_pred CeEEEEE--CCccHH---HHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeeccchh Confidence 4443322 111110 0111111110 111235677889999999999999988877663 No 42 >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. Probab=99.79 E-value=5.7e-18 Score=132.47 Aligned_cols=144 Identities=17% Similarity=0.257 Sum_probs=105.9 Q ss_pred HHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEE Q psy2408 81 INKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGG 160 (298) Q Consensus 81 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V 160 (298) ++.+..-++.++||+|||.|+.+.+|++ .|..|+++|.|+..++.+++.+...+++ ++..+.|+.+..++ +.||+| T Consensus 23 ~~a~~~~~~g~~LDlgcG~GRNalyLA~-~G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~-~~yD~I 98 (192) T PF03848_consen 23 LEAVPLLKPGKALDLGCGEGRNALYLAS-QGFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFP-EEYDFI 98 (192) T ss_dssp HHHCTTS-SSEEEEES-TTSHHHHHHHH-TT-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-T-TTEEEE T ss_pred HHHHhhcCCCcEEEcCCCCcHHHHHHHH-CCCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcccc-CCcCEE Confidence 3334444567999999999999999999 6999999999999999999999888875 99999999887765 689999 Q ss_pred EecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEE Q psy2408 161 WFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKI 237 (298) Q Consensus 161 ~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 237 (298) ++..++++++.+ .+++++...++|||++++..+......+ . .......+...++...+. ||+++.. T Consensus 99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p--~-------~~~~~f~~~~~EL~~~y~--dW~il~y 167 (192) T PF03848_consen 99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYP--C-------PSPFPFLLKPGELREYYA--DWEILKY 167 (192) T ss_dssp EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS-----------SS--S--B-TTHHHHHTT--TSEEEEE T ss_pred EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCC--C-------CCCCCcccCHHHHHHHhC--CCeEEEE Confidence 999999999876 8999999999999999987665333222 0 011233456677877775 7998875 Q ss_pred Ee Q psy2408 238 DD 239 (298) Q Consensus 238 ~~ 239 (298) .+ T Consensus 168 ~E 169 (192) T PF03848_consen 168 NE 169 (192) T ss_dssp EE T ss_pred Ec Confidence 44 No 43 >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification Probab=99.78 E-value=3.8e-18 Score=140.10 Aligned_cols=167 Identities=20% Similarity=0.227 Sum_probs=121.9 Q ss_pred HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC Q psy2408 77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS 156 (298) Q Consensus 77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 156 (298) .+.+...+..-.|.+|||||||.|..+..++......|+|+|++.....+.+..-.-.+....+.+....+.++|. .+. T Consensus 104 W~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~ 182 (315) T PF08003_consen 104 WDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGA 182 (315) T ss_pred HHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCC Confidence 4445555544478999999999999999999854457999999998877755444433433334455457777776 689 Q ss_pred eeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHH-H-HHHHhhcccCCCCcchHHHHHHhCCCc Q psy2408 157 FDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKF-K-EYVKKNIHSNFILVEHYPDLLNKSGFE 233 (298) Q Consensus 157 fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 233 (298) ||+|+|++||+|..+| ..|.+++..|+|||.+++.+....+... .... . .+......-...+...+..+|+++||. T Consensus 183 FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~-~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~ 261 (315) T PF08003_consen 183 FDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDEN-TVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFK 261 (315) T ss_pred cCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCc-eEEccCCcccCCCceEEeCCHHHHHHHHHHcCCc Confidence 9999999999999999 9999999999999999998877665333 0000 0 111111112245788899999999999 Q ss_pred EEEEEeCCCCcc Q psy2408 234 LIKIDDITSHVM 245 (298) Q Consensus 234 ~~~~~~~~~~~~ 245 (298) .+++.+...... T Consensus 262 ~v~~v~~~~Tt~ 273 (315) T PF08003_consen 262 DVRCVDVSPTTI 273 (315) T ss_pred eEEEecCccCCH Confidence 999888775543 No 44 >PRK12335 tellurite resistance protein TehB; Provisional Probab=99.78 E-value=6.4e-18 Score=143.26 Aligned_cols=137 Identities=18% Similarity=0.185 Sum_probs=109.0 Q ss_pred CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccccc Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIF 167 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 167 (298) ++.+|||+|||+|..+.++++ .+.+|+|+|+|+.+++.+++++...++ ++++...|+...++ +++||+|++..+++ T Consensus 120 ~~~~vLDlGcG~G~~~~~la~-~g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-~~~fD~I~~~~vl~ 195 (287) T PRK12335 120 KPGKALDLGCGQGRNSLYLAL-LGFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-QEEYDFILSTVVLM 195 (287) T ss_pred CCCCEEEeCCCCCHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-cCCccEEEEcchhh Confidence 445999999999999999998 578999999999999999999988776 58888999877655 57899999999999 Q ss_pred ccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEe Q psy2408 168 HMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDD 239 (298) Q Consensus 168 ~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 239 (298) +++.. .+++++.++|+|||++++.........+ ........++..++.+.+. +|+++...+ T Consensus 196 ~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~---------~~~p~~~~~~~~el~~~~~--~~~i~~~~e 259 (287) T PRK12335 196 FLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP---------CPMPFSFTFKEGELKDYYQ--DWEIVKYNE 259 (287) T ss_pred hCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCC---------CCCCCCcccCHHHHHHHhC--CCEEEEEec Confidence 98743 9999999999999997775443222211 0011234577888988886 498888754 No 45 >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional Probab=99.78 E-value=1.2e-17 Score=137.91 Aligned_cols=162 Identities=23% Similarity=0.312 Sum_probs=121.4 Q ss_pred HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-CCCC Q psy2408 77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-FDND 155 (298) Q Consensus 77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~ 155 (298) ...+...+...++.+|||+|||+|.++..+++ .+++++++|+++.+++.+++++...+. ++.+...|+.+++ ...+ T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 113 (233) T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMAR-LGADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPG 113 (233) T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHH-cCCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCC Confidence 34555555556788999999999999998888 578999999999999999998876554 4788888887764 2457 Q ss_pred CeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHH-HHHHHh------hcccCCCCcchHHHHH Q psy2408 156 SFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKF-KEYVKK------NIHSNFILVEHYPDLL 227 (298) Q Consensus 156 ~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~l 227 (298) +||+|++..+++|++++ .+++.+.++|+|||.+++..+............ ...... .....+++.+++.+++ T Consensus 114 ~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 193 (233) T PRK05134 114 QFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWL 193 (233) T ss_pred CccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHH Confidence 89999999999999999 999999999999999998866422110000000 000000 1123467888999999 Q ss_pred HhCCCcEEEEEeCC Q psy2408 228 NKSGFELIKIDDIT 241 (298) Q Consensus 228 ~~~Gf~~~~~~~~~ 241 (298) +++||.++....+. T Consensus 194 ~~~Gf~~v~~~~~~ 207 (233) T PRK05134 194 RQAGLEVQDITGLH 207 (233) T ss_pred HHCCCeEeeeeeEE Confidence 99999999876544 No 46 >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed Probab=99.78 E-value=9.4e-18 Score=132.21 Aligned_cols=126 Identities=21% Similarity=0.225 Sum_probs=103.5 Q ss_pred CCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecc Q psy2408 86 ITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFE 164 (298) Q Consensus 86 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~ 164 (298) ++++.+|||+|||+|..+..++.. .+++|+++|+|+.+++.+++++...++++ ++++++|+.+++. .++||+|++.. T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~-~~~fDlV~~~~ 120 (187) T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ-EEKFDVVTSRA 120 (187) T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC-CCCccEEEEcc Confidence 345889999999999999999875 46899999999999999999999988854 9999999998865 67999999864 Q ss_pred cccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeC Q psy2408 165 SIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDI 240 (298) Q Consensus 165 ~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 240 (298) +.+. .+++.+.++|+|||++++..... ...++.++.+..|+.+.....+ T Consensus 121 ----~~~~~~~l~~~~~~LkpGG~lv~~~~~~-----------------------~~~~l~~~~~~~~~~~~~~~~~ 170 (187) T PRK00107 121 ----VASLSDLVELCLPLLKPGGRFLALKGRD-----------------------PEEEIAELPKALGGKVEEVIEL 170 (187) T ss_pred ----ccCHHHHHHHHHHhcCCCeEEEEEeCCC-----------------------hHHHHHHHHHhcCceEeeeEEE Confidence 3456 99999999999999999875331 1234666777779887766554 No 47 >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. Probab=99.76 E-value=1.3e-17 Score=128.49 Aligned_cols=153 Identities=19% Similarity=0.224 Sum_probs=115.4 Q ss_pred HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-C-CCCCCC Q psy2408 79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-L-PFDNDS 156 (298) Q Consensus 79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~ 156 (298) .|.+.. +|+.+|||+|||.|.+...|.+..+++..|+|++++.+..|.++ | ++++++|+.+ + .+++++ T Consensus 6 ~I~~~I--~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~gL~~f~d~s 75 (193) T PF07021_consen 6 IIAEWI--EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEGLADFPDQS 75 (193) T ss_pred HHHHHc--CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHhHhhCCCCC Confidence 344444 68999999999999999999987789999999999998888765 3 6799999976 3 588999 Q ss_pred eeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCC-----------CCCChhHHHHHHHhhcccCCCCcchHH Q psy2408 157 FDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLS-----------VSKNDNKFKEYVKKNIHSNFILVEHYP 224 (298) Q Consensus 157 fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (298) ||.|+++.+++++..| .+|+++.|+ |...+++-++... .++....+..-+-..+..++.|..+++ T Consensus 76 FD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe 152 (193) T PF07021_consen 76 FDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFE 152 (193) T ss_pred ccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHH Confidence 9999999999999999 999999877 4455665554211 111001111001112234578899999 Q ss_pred HHHHhCCCcEEEEEeCCCCc Q psy2408 225 DLLNKSGFELIKIDDITSHV 244 (298) Q Consensus 225 ~~l~~~Gf~~~~~~~~~~~~ 244 (298) +++++.|+++++...+.... T Consensus 153 ~lc~~~~i~I~~~~~~~~~~ 172 (193) T PF07021_consen 153 DLCRELGIRIEERVFLDGGR 172 (193) T ss_pred HHHHHCCCEEEEEEEEcCCC Confidence 99999999999988777665 No 48 >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] Probab=99.76 E-value=1.5e-17 Score=128.68 Aligned_cols=157 Identities=17% Similarity=0.170 Sum_probs=123.8 Q ss_pred HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC Q psy2408 76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN 154 (298) Q Consensus 76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 154 (298) =...++..+.+.+..+|.|+|||+|..+..|+++ +++.++|+|-|++|++.|+++. .+++|..+|+..+. +. T Consensus 18 Pa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~-p~ 90 (257) T COG4106 18 PARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWK-PE 90 (257) T ss_pred cHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcC-CC Confidence 3567788888888999999999999999999998 5789999999999999998774 46899999999985 46 Q ss_pred CCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHH---------Hh--hcccCCCCcch Q psy2408 155 DSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYV---------KK--NIHSNFILVEH 222 (298) Q Consensus 155 ~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~---------~~--~~~~~~~~~~~ 222 (298) ...|+++++.+++++++- .+|..+...|.|||.|.+.-+......+ -....... .. .......++.. T Consensus 91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~deps-H~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~ 169 (257) T COG4106 91 QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPS-HRLMRETADEAPFAQELGGRGLTRAPLPSPAA 169 (257) T ss_pred CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchh-HHHHHHHHhcCchhhhhCccccccCCCCCHHH Confidence 789999999999999999 9999999999999999998666544332 11111111 11 11345667888 Q ss_pred HHHHHHhCCCcEEEEEeC Q psy2408 223 YPDLLNKSGFELIKIDDI 240 (298) Q Consensus 223 ~~~~l~~~Gf~~~~~~~~ 240 (298) +-++|...+=++...+.. T Consensus 170 Yy~lLa~~~~rvDiW~T~ 187 (257) T COG4106 170 YYELLAPLACRVDIWHTT 187 (257) T ss_pred HHHHhCcccceeeeeeee Confidence 888888877665554443 No 49 >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. Probab=99.75 E-value=6.1e-17 Score=132.83 Aligned_cols=148 Identities=26% Similarity=0.366 Sum_probs=115.5 Q ss_pred CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC-CCCeeEEEecccc Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD-NDSFDGGWFFESI 166 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~V~~~~~l 166 (298) .+.+|||+|||+|.++..+++ .+.+++++|+++.+++.++.++...+.. ++.+...|+.+++.. .++||+|++..++ T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224) T TIGR01983 45 FGLRVLDVGCGGGLLSEPLAR-LGANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224) T ss_pred CCCeEEEECCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehhHH Confidence 478999999999999998887 5678999999999999999988776542 588899998876543 3789999999999 Q ss_pred cccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHH-----HHh------hcccCCCCcchHHHHHHhCCCcE Q psy2408 167 FHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEY-----VKK------NIHSNFILVEHYPDLLNKSGFEL 234 (298) Q Consensus 167 ~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~-----~~~------~~~~~~~~~~~~~~~l~~~Gf~~ 234 (298) +++.++ .+++++.++|+|||.+++........ ...... ... .....+.+..++.++++++||++ T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i 198 (224) T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFSTINRTPK----SYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRV 198 (224) T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEecCCCch----HHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCee Confidence 999999 99999999999999999886643210 111110 000 11224567788999999999999 Q ss_pred EEEEeCC Q psy2408 235 IKIDDIT 241 (298) Q Consensus 235 ~~~~~~~ 241 (298) ++...+. T Consensus 199 ~~~~~~~ 205 (224) T TIGR01983 199 KDVKGLV 205 (224) T ss_pred eeeeeEE Confidence 9887544 No 50 >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A. Probab=99.74 E-value=6.9e-18 Score=120.53 Aligned_cols=93 Identities=37% Similarity=0.532 Sum_probs=80.2 Q ss_pred EEEeCCCCCHHHHHHHHhc--C--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEec-ccc Q psy2408 92 FIDIGCGFGLSGIRLAKAK--G--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFF-ESI 166 (298) Q Consensus 92 vLDiGcG~G~~~~~l~~~~--~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~-~~l 166 (298) |||+|||+|..+..+++.. + .+++|+|+|++|++.++++....+. ++++++.|+.+++..+++||+|++. .++ T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101) T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101) T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc Confidence 7999999999999999864 3 7999999999999999999987665 6899999999988778899999995 559 Q ss_pred cccChH---HHHHHHhhcccCCc Q psy2408 167 FHMNHS---AALNEARRVLKSGS 186 (298) Q Consensus 167 ~~~~~~---~~l~~~~r~LkpgG 186 (298) +|+.+. .+++++.++|+||| T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101) T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101) T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE T ss_pred CCCCHHHHHHHHHHHHHHhCCCC Confidence 998876 99999999999998 No 51 >KOG1271|consensus Probab=99.73 E-value=5e-17 Score=122.29 Aligned_cols=145 Identities=19% Similarity=0.281 Sum_probs=117.9 Q ss_pred HHHHHHHHHHHHhCC---CCCCC-eEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC Q psy2408 71 QGSDKLSRIMINKTS---ITKGQ-RFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG 145 (298) Q Consensus 71 ~~~~~~~~~l~~~~~---~~~~~-~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~ 145 (298) .+..++++++.+... +.... +|||+|||.|.+...|++. +...++|+|.|+.+++.|+..++..+.++.|+|.+. T Consensus 46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~ 125 (227) T KOG1271|consen 46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQL 125 (227) T ss_pred cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEe Confidence 467788888887765 34444 9999999999999999986 345699999999999999999999999888999999 Q ss_pred CCCCCCCCCCCeeEEEecccccccC---h-----H-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccC Q psy2408 146 DALNLPFDNDSFDGGWFFESIFHMN---H-----S-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSN 216 (298) Q Consensus 146 d~~~~~~~~~~fD~V~~~~~l~~~~---~-----~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (298) |+.+..+..++||+|+--.++..+. + + .++..+.++|+|||+++|...+ T Consensus 126 DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN---------------------- 183 (227) T KOG1271|consen 126 DITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN---------------------- 183 (227) T ss_pred eccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC---------------------- Confidence 9998767778999998765554432 2 1 6788899999999999997655 Q ss_pred CCCcchHHHHHHhCCCcEEEEE Q psy2408 217 FILVEHYPDLLNKSGFELIKID 238 (298) Q Consensus 217 ~~~~~~~~~~l~~~Gf~~~~~~ 238 (298) ++.+++.+.++..||...... T Consensus 184 -~T~dELv~~f~~~~f~~~~tv 204 (227) T KOG1271|consen 184 -FTKDELVEEFENFNFEYLSTV 204 (227) T ss_pred -ccHHHHHHHHhcCCeEEEEee Confidence 355688888888888766543 No 52 >PRK06202 hypothetical protein; Provisional Probab=99.73 E-value=5.6e-17 Score=133.58 Aligned_cols=147 Identities=16% Similarity=0.131 Sum_probs=107.8 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHh-----cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEE Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKA-----KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGW 161 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~ 161 (298) .++.+|||+|||+|.++..+++. .+.+++|+|+|+.|++.|+++.... ++.+...+...++.++++||+|+ T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~~~~~fD~V~ 134 (232) T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVAEGERFDVVT 134 (232) T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccccCCCccEEE Confidence 56789999999999999888763 1359999999999999998875432 35677777766666678999999 Q ss_pred ecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHH----H-H-------hhcccCCCCcchHHHH Q psy2408 162 FFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEY----V-K-------KNIHSNFILVEHYPDL 226 (298) Q Consensus 162 ~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~----~-~-------~~~~~~~~~~~~~~~~ 226 (298) ++.+++|++++ .+++++.++++ |.+++.++....... ...... . . ......+++.+++.++ T Consensus 135 ~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~l 210 (232) T PRK06202 135 SNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAY--ALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAAL 210 (232) T ss_pred ECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHH--HHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHH Confidence 99999999986 79999999998 667776666432100 000000 0 0 0112357889999999 Q ss_pred HHhCCCcEEEEEeCCC Q psy2408 227 LNKSGFELIKIDDITS 242 (298) Q Consensus 227 l~~~Gf~~~~~~~~~~ 242 (298) +++ ||++.....+.. T Consensus 211 l~~-Gf~~~~~~~~~~ 225 (232) T PRK06202 211 APQ-GWRVERQWPFRY 225 (232) T ss_pred hhC-CCeEEeccceee Confidence 999 999887655443 No 53 >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. Probab=99.73 E-value=3.9e-16 Score=125.84 Aligned_cols=149 Identities=15% Similarity=0.138 Sum_probs=108.7 Q ss_pred HHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc-----------CCCCceEEEECCCC Q psy2408 80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAE-----------GLLDKVNFLHGDAL 148 (298) Q Consensus 80 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~-----------~~~~~i~~~~~d~~ 148 (298) .+..+.+.++.+|||+|||.|..+..|++ .|..|+|+|+|+.+++.+....... .-..+++++++|+. T Consensus 26 ~~~~l~~~~~~rvLd~GCG~G~da~~LA~-~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~ 104 (213) T TIGR03840 26 HWPALGLPAGARVFVPLCGKSLDLAWLAE-QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFF 104 (213) T ss_pred HHHhhCCCCCCeEEEeCCCchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCC Confidence 33443335677999999999999999998 6999999999999999864321100 00235899999999 Q ss_pred CCCCC-CCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHH Q psy2408 149 NLPFD-NDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYP 224 (298) Q Consensus 149 ~~~~~-~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (298) +++.. .+.||.|+-..+++|++.. .+++.+.++|+|||++++..+....... ...+...+.+++. T Consensus 105 ~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~-----------~gpp~~~~~~eL~ 173 (213) T TIGR03840 105 ALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM-----------AGPPFSVSPAEVE 173 (213) T ss_pred CCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC-----------CCcCCCCCHHHHH Confidence 87532 4679999999999999876 8999999999999987777665422111 1123457788888 Q ss_pred HHHHhCCCcEEEEEeCC Q psy2408 225 DLLNKSGFELIKIDDIT 241 (298) Q Consensus 225 ~~l~~~Gf~~~~~~~~~ 241 (298) +++. .+|.+....... T Consensus 174 ~~f~-~~~~i~~~~~~~ 189 (213) T TIGR03840 174 ALYG-GHYEIELLESRD 189 (213) T ss_pred HHhc-CCceEEEEeecc Confidence 8886 356666655433 No 54 >PLN02336 phosphoethanolamine N-methyltransferase Probab=99.73 E-value=6e-17 Score=147.22 Aligned_cols=149 Identities=14% Similarity=0.159 Sum_probs=114.0 Q ss_pred HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC--CCCCC Q psy2408 77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN--LPFDN 154 (298) Q Consensus 77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~ 154 (298) ...+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++... +..+++.++++|+.. +++++ T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~~~ 101 (475) T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNISD 101 (475) T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCCCC Confidence 456667776667789999999999999999984 679999999999999876532 223578999999963 56778 Q ss_pred CCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCC Q psy2408 155 DSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSG 231 (298) Q Consensus 155 ~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 231 (298) ++||+|++..+++|+++. .+++++.++|+|||++++.+........ . ........+.....|..++.++| T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~----~---~~~~~~~~~~~~~~~~~~f~~~~ 174 (475) T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGD----S---KRKNNPTHYREPRFYTKVFKECH 174 (475) T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCc----c---cccCCCCeecChHHHHHHHHHhe Confidence 899999999999999874 8999999999999999998866433211 0 00111223345678888888888 Q ss_pred CcEEE Q psy2408 232 FELIK 236 (298) Q Consensus 232 f~~~~ 236 (298) |.... T Consensus 175 ~~~~~ 179 (475) T PLN02336 175 TRDED 179 (475) T ss_pred eccCC Confidence 87653 No 55 >TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. Probab=99.73 E-value=3.1e-16 Score=123.42 Aligned_cols=127 Identities=20% Similarity=0.273 Sum_probs=99.1 Q ss_pred CCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI 166 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 166 (298) ++.+|||+|||+|..+..++... +++|+++|+|+.+++.+++.+...+++ +++++++|+.+++ ..++||+|++.. T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~-~~~~fD~I~s~~-- 117 (181) T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ-HEEQFDVITSRA-- 117 (181) T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc-ccCCccEEEehh-- Confidence 47899999999999999988753 568999999999999999999888874 5999999998874 357999999865 Q ss_pred cccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHH---HHhCCCcEEEEEeCCC Q psy2408 167 FHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDL---LNKSGFELIKIDDITS 242 (298) Q Consensus 167 ~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~Gf~~~~~~~~~~ 242 (298) +.+. .+++.+.++|+|||.+++.... . ...++..+ +.-.||+.++...+.. T Consensus 118 --~~~~~~~~~~~~~~LkpgG~lvi~~~~----~-------------------~~~~~~~~~e~~~~~~~~~~~~~~~~~ 172 (181) T TIGR00138 118 --LASLNVLLELTLNLLKVGGYFLAYKGK----K-------------------YLDEIEEAKRKCQVLGVEPLEVPPLTG 172 (181) T ss_pred --hhCHHHHHHHHHHhcCCCCEEEEEcCC----C-------------------cHHHHHHHHHhhhhcCceEeeccccCC Confidence 3345 7888889999999999986321 1 11233333 4448999988876654 Q ss_pred C Q psy2408 243 H 243 (298) Q Consensus 243 ~ 243 (298) . T Consensus 173 ~ 173 (181) T TIGR00138 173 P 173 (181) T ss_pred C Confidence 4 No 56 >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional Probab=99.72 E-value=2.1e-16 Score=127.43 Aligned_cols=114 Identities=20% Similarity=0.222 Sum_probs=96.2 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP 151 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~ 151 (298) ..+...+++.+.+.++.+|||+|||+|..+..+++.. +++|+++|+++.+++.+++++...++..+++++.+|+.+.. T Consensus 58 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~ 137 (205) T PRK13944 58 PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL 137 (205) T ss_pred HHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC Confidence 3456677788888889999999999999999998864 46999999999999999999988887667999999998754 Q ss_pred CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) ....+||+|++..++.++++ ++.++|+|||++++.. T Consensus 138 ~~~~~fD~Ii~~~~~~~~~~-----~l~~~L~~gG~lvi~~ 173 (205) T PRK13944 138 EKHAPFDAIIVTAAASTIPS-----ALVRQLKDGGVLVIPV 173 (205) T ss_pred ccCCCccEEEEccCcchhhH-----HHHHhcCcCcEEEEEE Confidence 34578999999988876653 6789999999998853 No 57 >TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. Probab=99.71 E-value=2.3e-16 Score=126.29 Aligned_cols=148 Identities=20% Similarity=0.268 Sum_probs=106.2 Q ss_pred HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-C-CCCCCC Q psy2408 79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-L-PFDNDS 156 (298) Q Consensus 79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~ 156 (298) .+.+.+ +++.+|||+|||+|.++..+++..+..++|+|+|+++++.++.. +++++++|+.+ + ++++++ T Consensus 6 ~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~s 75 (194) T TIGR02081 6 SILNLI--PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKS 75 (194) T ss_pred HHHHhc--CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCC Confidence 344444 46789999999999999998876677899999999999988642 36788888865 4 366789 Q ss_pred eeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHH--------------HhhcccCCCCcc Q psy2408 157 FDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYV--------------KKNIHSNFILVE 221 (298) Q Consensus 157 fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~ 221 (298) ||+|+++.+++|++++ .+++++.|++++ +++..++... .. .....+. ....+..+++.+ T Consensus 76 fD~Vi~~~~l~~~~d~~~~l~e~~r~~~~---~ii~~p~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 149 (194) T TIGR02081 76 FDYVILSQTLQATRNPEEILDEMLRVGRH---AIVSFPNFGY-WR--VRWSILTKGRMPVTGELPYDWYNTPNIHFCTIA 149 (194) T ss_pred cCEEEEhhHhHcCcCHHHHHHHHHHhCCe---EEEEcCChhH-HH--HHHHHHhCCccccCCCCCccccCCCCcccCcHH Confidence 9999999999999999 999999887653 4443322110 00 0000000 001123577899 Q ss_pred hHHHHHHhCCCcEEEEEeCCC Q psy2408 222 HYPDLLNKSGFELIKIDDITS 242 (298) Q Consensus 222 ~~~~~l~~~Gf~~~~~~~~~~ 242 (298) ++.++++++||++++...+.. T Consensus 150 ~~~~ll~~~Gf~v~~~~~~~~ 170 (194) T TIGR02081 150 DFEDLCGELNLRILDRAAFDV 170 (194) T ss_pred HHHHHHHHCCCEEEEEEEecc Confidence 999999999999998776643 No 58 >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme Probab=99.71 E-value=3.3e-16 Score=125.73 Aligned_cols=113 Identities=18% Similarity=0.287 Sum_probs=91.1 Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC Q psy2408 72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL 150 (298) Q Consensus 72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~ 150 (298) +.......++..+ .++.+|||+|||+|..+..+++. .+.+++|+|+|+.+++.|+++. .++.+.++|+.+ T Consensus 29 ~~~~~~~~~l~~~--~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~- 99 (204) T TIGR03587 29 AKLAMFARALNRL--PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD- 99 (204) T ss_pred HHHHHHHHHHHhc--CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC- Confidence 3334444444444 46779999999999999999886 3689999999999999998764 246788999888 Q ss_pred CCCCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCC Q psy2408 151 PFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPL 195 (298) Q Consensus 151 ~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~ 195 (298) ++++++||+|++..+++|+++. .+++++.|++ ++.+++.++.. T Consensus 100 ~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204) T TIGR03587 100 PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204) T ss_pred CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC Confidence 7788999999999999999743 8999999987 56888887653 No 59 >smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. Probab=99.71 E-value=1.5e-16 Score=132.82 Aligned_cols=127 Identities=20% Similarity=0.233 Sum_probs=95.9 Q ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCH----HHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHH--- Q psy2408 66 KDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGL----SGIRLAKAK------GCRVDGITISKFQQESAMKTAK--- 132 (298) Q Consensus 66 ~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~----~~~~l~~~~------~~~v~~vD~s~~~l~~a~~~~~--- 132 (298) ...+..-...+...++......++.+|+|+|||+|. +++.+++.. +.+|+|+|+|+.|++.|++..- T Consensus 77 ~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~ 156 (264) T smart00138 77 SKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPER 156 (264) T ss_pred cHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHH Confidence 334444444445555554444566899999999996 455555532 3689999999999999998531 Q ss_pred -hcC----------------------CCCceEEEECCCCCCCCCCCCeeEEEecccccccChH---HHHHHHhhcccCCc Q psy2408 133 -AEG----------------------LLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGS 186 (298) Q Consensus 133 -~~~----------------------~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG 186 (298) ..+ +..++.|.+.|+.+.+++.++||+|+|..+++|++++ .++++++++|+||| T Consensus 157 ~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG 236 (264) T smart00138 157 ELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGG 236 (264) T ss_pred HHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCe Confidence 011 1246899999999987677899999999999999866 89999999999999 Q ss_pred EEEEEe Q psy2408 187 ILTLTD 192 (298) Q Consensus 187 ~l~i~~ 192 (298) +|++.. T Consensus 237 ~L~lg~ 242 (264) T smart00138 237 YLFLGH 242 (264) T ss_pred EEEEEC Confidence 999863 No 60 >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated Probab=99.71 E-value=9.6e-16 Score=122.01 Aligned_cols=141 Identities=18% Similarity=0.175 Sum_probs=109.9 Q ss_pred HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC Q psy2408 73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP 151 (298) Q Consensus 73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~ 151 (298) ...+...++..+.+.++.+|||+|||+|.++..+++.. +.+|+++|+|+.+++.+++++...++. +++++++|+.. + T Consensus 16 ~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~ 93 (187) T PRK08287 16 KEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-E 93 (187) T ss_pred hHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-h Confidence 34555666777777888999999999999999998864 579999999999999999998887764 68999998753 3 Q ss_pred CCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhC Q psy2408 152 FDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKS 230 (298) Q Consensus 152 ~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (298) + .++||+|++..... .. .+++.+.++|+|||++++..... .+..++...+++. T Consensus 94 ~-~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~~----------------------~~~~~~~~~l~~~ 147 (187) T PRK08287 94 L-PGKADAIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTFILL----------------------ENLHSALAHLEKC 147 (187) T ss_pred c-CcCCCEEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEEecH----------------------hhHHHHHHHHHHC Confidence 3 36899999876543 34 78899999999999998864331 1124667889999 Q ss_pred CCcEEEEEeCC Q psy2408 231 GFELIKIDDIT 241 (298) Q Consensus 231 Gf~~~~~~~~~ 241 (298) ||..++...+. T Consensus 148 g~~~~~~~~~~ 158 (187) T PRK08287 148 GVSELDCVQLQ 158 (187) T ss_pred CCCcceEEEEE Confidence 99877655443 No 61 >PRK13255 thiopurine S-methyltransferase; Reviewed Probab=99.70 E-value=1.7e-15 Score=122.58 Aligned_cols=145 Identities=18% Similarity=0.212 Sum_probs=107.9 Q ss_pred HHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC--------------CCceEEEECC Q psy2408 81 INKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL--------------LDKVNFLHGD 146 (298) Q Consensus 81 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--------------~~~i~~~~~d 146 (298) +..+.+.++.+|||+|||.|..+..|++ .|..|+|||+|+..++.+... .++ ..++++.++| T Consensus 30 ~~~~~~~~~~rvL~~gCG~G~da~~LA~-~G~~V~avD~s~~Ai~~~~~~---~~l~~~~~~~~~~~~~~~~~v~~~~~D 105 (218) T PRK13255 30 WPALALPAGSRVLVPLCGKSLDMLWLAE-QGHEVLGVELSELAVEQFFAE---NGLTPQTRQSGEFEHYQAGEITIYCGD 105 (218) T ss_pred HHhhCCCCCCeEEEeCCCChHhHHHHHh-CCCeEEEEccCHHHHHHHHHH---cCCCccccccccccccccCceEEEECc Confidence 3334445677999999999999999998 699999999999999987432 222 2468899999 Q ss_pred CCCCCCC-CCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcch Q psy2408 147 ALNLPFD-NDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEH 222 (298) Q Consensus 147 ~~~~~~~-~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (298) +.+++.. .+.||+|+-..+++|++.. .+++.+.++|+|||++++.......... ...+...+.++ T Consensus 106 ~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~-----------~gPp~~~~~~e 174 (218) T PRK13255 106 FFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL-----------AGPPFSVSDEE 174 (218) T ss_pred ccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC-----------CCCCCCCCHHH Confidence 9988532 2689999999999999866 9999999999999976654443321110 11234678889 Q ss_pred HHHHHHhCCCcEEEEEeCC Q psy2408 223 YPDLLNKSGFELIKIDDIT 241 (298) Q Consensus 223 ~~~~l~~~Gf~~~~~~~~~ 241 (298) +.+++. .+|.+....... T Consensus 175 l~~~~~-~~~~i~~~~~~~ 192 (218) T PRK13255 175 VEALYA-GCFEIELLERQD 192 (218) T ss_pred HHHHhc-CCceEEEeeecc Confidence 998885 337777766544 No 62 >PLN02232 ubiquinone biosynthesis methyltransferase Probab=99.70 E-value=2.7e-16 Score=121.61 Aligned_cols=130 Identities=23% Similarity=0.309 Sum_probs=99.9 Q ss_pred EEEeCCHHHHHHHHHHHHhcC--CCCceEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEE Q psy2408 115 DGITISKFQQESAMKTAKAEG--LLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLT 191 (298) Q Consensus 115 ~~vD~s~~~l~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~ 191 (298) +|+|+|++|++.|+++....+ ...+++++++|+.++|+++++||+|++..++++++++ .++++++|+|||||.+++. T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160) T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160) T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE Confidence 589999999999987765322 2346999999999999988999999999999999999 9999999999999999999 Q ss_pred eCCCCCCCCChhHHHHHH---------------Hh-----hcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcc Q psy2408 192 DLPLLSVSKNDNKFKEYV---------------KK-----NIHSNFILVEHYPDLLNKSGFELIKIDDITSHVM 245 (298) Q Consensus 192 ~~~~~~~~~~~~~~~~~~---------------~~-----~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~ 245 (298) ++....... ......+. .. .....+.+.+++.++|+++||+.+....+..+.. T Consensus 81 d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~ 153 (160) T PLN02232 81 DFNKSNQSV-TTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFM 153 (160) T ss_pred ECCCCChHH-HHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHh Confidence 887543211 00000000 00 0113567899999999999999888877766543 No 63 >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] Probab=99.69 E-value=5.8e-18 Score=131.95 Aligned_cols=190 Identities=23% Similarity=0.291 Sum_probs=137.3 Q ss_pred ccccCCCCc-hhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCH Q psy2408 23 IKENKGNKG-KKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGL 101 (298) Q Consensus 23 ~~~~~~~~~-~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~ 101 (298) ..-++..+. ...+...||+- ++.|+..+-+.+.+. ...+.+.++......+-.++||+|||||. T Consensus 74 g~~e~p~~pP~aYVe~LFD~~-Ae~Fd~~LVdkL~Y~--------------vP~~l~emI~~~~~g~F~~~lDLGCGTGL 138 (287) T COG4976 74 GRGETPEKPPSAYVETLFDQY-AERFDHILVDKLGYS--------------VPELLAEMIGKADLGPFRRMLDLGCGTGL 138 (287) T ss_pred cCCCCCCCCchHHHHHHHHHH-HHHHHHHHHHHhcCc--------------cHHHHHHHHHhccCCccceeeecccCcCc Confidence 333444444 48899999998 888887765443321 23456777788877777899999999999 Q ss_pred HHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC--CCCCCCeeEEEecccccccChH-HHHHHH Q psy2408 102 SGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL--PFDNDSFDGGWFFESIFHMNHS-AALNEA 178 (298) Q Consensus 102 ~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~~~~l~~~~~~-~~l~~~ 178 (298) .+..+-. .-.+++|||+|.+|++.|.++ ++.+ ...++++..+ ....+.||+|++..|+.++.+. .++.-+ T Consensus 139 ~G~~lR~-~a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~a 211 (287) T COG4976 139 TGEALRD-MADRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGA 211 (287) T ss_pred ccHhHHH-HHhhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHH Confidence 9988877 456899999999999999876 2221 2344444322 1346889999999999999999 999999 Q ss_pred hhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCC Q psy2408 179 RRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDIT 241 (298) Q Consensus 179 ~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 241 (298) ...|+|||.+.++.-....... +.-.+..+.-++...+++.++..||.++.+++.+ T Consensus 212 a~~L~~gGlfaFSvE~l~~~~~-------f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287) T COG4976 212 AGLLAPGGLFAFSVETLPDDGG-------FVLGPSQRYAHSESYVRALLAASGLEVIAIEDTT 267 (287) T ss_pred HHhcCCCceEEEEecccCCCCC-------eecchhhhhccchHHHHHHHHhcCceEEEeeccc Confidence 9999999999998655433221 0111112233456678899999999999987643 No 64 >PRK04266 fibrillarin; Provisional Probab=99.69 E-value=1.6e-15 Score=123.25 Aligned_cols=142 Identities=17% Similarity=0.184 Sum_probs=101.3 Q ss_pred HhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC----CCCCCC Q psy2408 82 NKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL----PFDNDS 156 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~ 156 (298) +.+.+.++.+|||+|||+|.++..+++.. ..+|+++|+++.|++.+.+.+... .++.++.+|+... ++ .++ T Consensus 66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l-~~~ 141 (226) T PRK04266 66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHV-VEK 141 (226) T ss_pred hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhc-ccc Confidence 35788899999999999999999999865 368999999999999887776543 4688999998752 22 256 Q ss_pred eeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcE Q psy2408 157 FDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFEL 234 (298) Q Consensus 157 fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 234 (298) ||+|++... .++. .+++++.++|||||++++......-... ... ... .++..+.++++||++ T Consensus 142 ~D~i~~d~~---~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~-~~~-~~~-----------~~~~~~~l~~aGF~~ 205 (226) T PRK04266 142 VDVIYQDVA---QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVT-KDP-KEI-----------FKEEIRKLEEGGFEI 205 (226) T ss_pred CCEEEECCC---ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCc-CCH-HHH-----------HHHHHHHHHHcCCeE Confidence 999985321 1222 5689999999999999995322111110 000 000 124458999999999 Q ss_pred EEEEeCCCC Q psy2408 235 IKIDDITSH 243 (298) Q Consensus 235 ~~~~~~~~~ 243 (298) ++..++... T Consensus 206 i~~~~l~p~ 214 (226) T PRK04266 206 LEVVDLEPY 214 (226) T ss_pred EEEEcCCCC Confidence 998876543 No 65 >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. Probab=99.69 E-value=1.4e-15 Score=112.79 Aligned_cols=114 Identities=21% Similarity=0.191 Sum_probs=93.0 Q ss_pred HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-CC Q psy2408 75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-PF 152 (298) Q Consensus 75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~~ 152 (298) .+...+++.+.+.++.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.+++.+...++. ++.++..|+... +. T Consensus 6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (124) T TIGR02469 6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALED 84 (124) T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChh Confidence 445556777777778899999999999999999874 579999999999999999998877764 588998987652 32 Q ss_pred CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEe Q psy2408 153 DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTD 192 (298) Q Consensus 153 ~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~ 192 (298) ..++||.|++..... .. .+++++.+.|+|||++++.. T Consensus 85 ~~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~~ 122 (124) T TIGR02469 85 SLPEPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLNA 122 (124) T ss_pred hcCCCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEEe Confidence 346899999866432 23 89999999999999999864 No 66 >TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. Probab=99.69 E-value=2.4e-15 Score=118.85 Aligned_cols=129 Identities=22% Similarity=0.269 Sum_probs=103.6 Q ss_pred CCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccc Q psy2408 86 ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFES 165 (298) Q Consensus 86 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 165 (298) ..++.+|||+|||+|.++..++.. +.+++++|+|+.+++.+++++...+. ++.++.+|+.+.+ .++||+|+++.. T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~fD~Vi~n~p 91 (179) T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--RGKFDVILFNPP 91 (179) T ss_pred hcCCCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--CCcccEEEECCC Confidence 345679999999999999999984 44999999999999999999887664 5888999987653 358999999877 Q ss_pred ccccCh---------------------H-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchH Q psy2408 166 IFHMNH---------------------S-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHY 223 (298) Q Consensus 166 l~~~~~---------------------~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (298) +++.++ . .+++++.++|+|||.+++...... ...++ T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~----------------------~~~~~ 149 (179) T TIGR00537 92 YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN----------------------GEPDT 149 (179) T ss_pred CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC----------------------ChHHH Confidence 765542 2 679999999999999998764421 13577 Q ss_pred HHHHHhCCCcEEEEEeCC Q psy2408 224 PDLLNKSGFELIKIDDIT 241 (298) Q Consensus 224 ~~~l~~~Gf~~~~~~~~~ 241 (298) ...+++.||......... T Consensus 150 ~~~l~~~gf~~~~~~~~~ 167 (179) T TIGR00537 150 FDKLDERGFRYEIVAERG 167 (179) T ss_pred HHHHHhCCCeEEEEEEee Confidence 889999999988776544 No 67 >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional Probab=99.68 E-value=2.5e-15 Score=120.59 Aligned_cols=136 Identities=19% Similarity=0.346 Sum_probs=106.4 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC- Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL- 150 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~- 150 (298) .++....+..+.+.++.+|||+|||+|.++..++... +.+|+++|+++.+++.+++++...++..++.++.+|+.+. T Consensus 26 ~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l 105 (198) T PRK00377 26 EEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEIL 105 (198) T ss_pred HHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhH Confidence 3445555678888899999999999999999988753 4689999999999999999999888667899999998764 Q ss_pred CCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHh Q psy2408 151 PFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNK 229 (298) Q Consensus 151 ~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 229 (298) +...++||+|++.. ...+. .+++.+.++|+|||++++..... . +..+....|++ T Consensus 106 ~~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~~~-------~---------------~~~~~~~~l~~ 160 (198) T PRK00377 106 FTINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAILL-------E---------------TVNNALSALEN 160 (198) T ss_pred hhcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEeecH-------H---------------HHHHHHHHHHH Confidence 32246899999854 23455 89999999999999998743320 0 13466778888 Q ss_pred CCCcE Q psy2408 230 SGFEL 234 (298) Q Consensus 230 ~Gf~~ 234 (298) .||.. T Consensus 161 ~g~~~ 165 (198) T PRK00377 161 IGFNL 165 (198) T ss_pred cCCCe Confidence 99853 No 68 >PRK06922 hypothetical protein; Provisional Probab=99.68 E-value=7.4e-16 Score=139.47 Aligned_cols=108 Identities=28% Similarity=0.399 Sum_probs=91.7 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--CCCCCeeEEEec Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--FDNDSFDGGWFF 163 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~ 163 (298) .++.+|||+|||+|..+..+++. ++.+++|+|+|+.|++.|+++....+ .++.++++|+.+++ +++++||+|+++ T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVVsn 494 (677) T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIVYS 494 (677) T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEEEc Confidence 46789999999999999888875 46899999999999999998876544 35788999998876 678899999999 Q ss_pred ccccccC-------------hH-HHHHHHhhcccCCcEEEEEeCCCC Q psy2408 164 ESIFHMN-------------HS-AALNEARRVLKSGSILTLTDLPLL 196 (298) Q Consensus 164 ~~l~~~~-------------~~-~~l~~~~r~LkpgG~l~i~~~~~~ 196 (298) .+++++. +. .+++++.++|||||++++.+.... T Consensus 495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677) T PRK06922 495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677) T ss_pred hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC Confidence 9888652 33 999999999999999999886543 No 69 >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. Probab=99.68 E-value=9.3e-18 Score=119.45 Aligned_cols=95 Identities=32% Similarity=0.339 Sum_probs=64.5 Q ss_pred EEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--CCCCCeeEEEeccccccc Q psy2408 93 IDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--FDNDSFDGGWFFESIFHM 169 (298) Q Consensus 93 LDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~~l~~~ 169 (298) ||+|||+|.++..+.+. ...+++++|+|+.|++.+++++...... +......+..+.. .+.++||+|++..+++|+ T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99) T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99) T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS-- T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcccccccceehhhhhHhhh Confidence 79999999999999987 3679999999999999999988876542 2344444433321 123699999999999999 Q ss_pred ChH-HHHHHHhhcccCCcEE Q psy2408 170 NHS-AALNEARRVLKSGSIL 188 (298) Q Consensus 170 ~~~-~~l~~~~r~LkpgG~l 188 (298) ++. .++++++++|+|||+| T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99) T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99) T ss_dssp S-HHHHHHHHTTT-TSS-EE T ss_pred hhHHHHHHHHHHHcCCCCCC Confidence 888 9999999999999986 No 70 >TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea. Probab=99.67 E-value=1.7e-15 Score=130.84 Aligned_cols=139 Identities=25% Similarity=0.241 Sum_probs=111.6 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD 153 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 153 (298) ..+...+++...+.++.+|||+|||+|.++..++. .+.+++|+|+++.|+..++.++...++.+ +.+.++|+.+++++ T Consensus 168 ~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~-~~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~ 245 (329) T TIGR01177 168 PKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGL-MGAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLS 245 (329) T ss_pred HHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHH-hCCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcc Confidence 34566677777788999999999999999888766 68899999999999999999999888865 88999999999887 Q ss_pred CCCeeEEEeccccc-------c-cCh-H-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchH Q psy2408 154 NDSFDGGWFFESIF-------H-MNH-S-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHY 223 (298) Q Consensus 154 ~~~fD~V~~~~~l~-------~-~~~-~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (298) +++||+|++.-... + ..+ . .+++++.++|+|||++++..+. ..++ T Consensus 246 ~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~-------------------------~~~~ 300 (329) T TIGR01177 246 SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT-------------------------RIDL 300 (329) T ss_pred cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC-------------------------CCCH Confidence 78999999853211 1 112 2 8999999999999999886443 1256 Q ss_pred HHHHHhCCCcEEEEEeC Q psy2408 224 PDLLNKSGFELIKIDDI 240 (298) Q Consensus 224 ~~~l~~~Gf~~~~~~~~ 240 (298) ..+++++|| ++..... T Consensus 301 ~~~~~~~g~-i~~~~~~ 316 (329) T TIGR01177 301 ESLAEDAFR-VVKRFEV 316 (329) T ss_pred HHHHhhcCc-chheeee Confidence 678899999 7765543 No 71 >PRK14967 putative methyltransferase; Provisional Probab=99.67 E-value=1.6e-14 Score=118.07 Aligned_cols=140 Identities=21% Similarity=0.174 Sum_probs=103.4 Q ss_pred HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC Q psy2408 77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS 156 (298) Q Consensus 77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 156 (298) ...++..+.+.++.+|||+|||+|.++..++.....+++++|+|+.+++.+++++...++ ++.++++|+.+. +++++ T Consensus 25 l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~~~~~ 101 (223) T PRK14967 25 LADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-VEFRP 101 (223) T ss_pred HHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-ccCCC Confidence 334455556678889999999999999999884224999999999999999999887765 488899998763 45678 Q ss_pred eeEEEecccccccC---------------------hH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcc Q psy2408 157 FDGGWFFESIFHMN---------------------HS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIH 214 (298) Q Consensus 157 fD~V~~~~~l~~~~---------------------~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 214 (298) ||+|+++-...... .. .+++++.++|+|||++++...... T Consensus 102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~------------------ 163 (223) T PRK14967 102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS------------------ 163 (223) T ss_pred eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc------------------ Confidence 99999874322110 02 578889999999999987543311 Q ss_pred cCCCCcchHHHHHHhCCCcEEEEEeCC Q psy2408 215 SNFILVEHYPDLLNKSGFELIKIDDIT 241 (298) Q Consensus 215 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 241 (298) ...++...+++.||.+....... T Consensus 164 ----~~~~~~~~l~~~g~~~~~~~~~~ 186 (223) T PRK14967 164 ----GVERTLTRLSEAGLDAEVVASQW 186 (223) T ss_pred ----CHHHHHHHHHHCCCCeEEEEeec Confidence 12356778889999866654433 No 72 >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional Probab=99.67 E-value=1.9e-15 Score=122.33 Aligned_cols=114 Identities=24% Similarity=0.267 Sum_probs=95.1 Q ss_pred HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC Q psy2408 73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL 150 (298) Q Consensus 73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~ 150 (298) ...+...+++.+.+.++.+|||||||+|..+..+++..+ .+|+++|+++.+++.+++++...++ .+++++++|+... T Consensus 61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~ 139 (212) T PRK13942 61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLG 139 (212) T ss_pred cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccC Confidence 456677788888889999999999999999999988643 6999999999999999999998876 4799999998875 Q ss_pred CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 151 PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 151 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) ..+.++||+|++.....+++ ..+.+.|+|||++++.. T Consensus 140 ~~~~~~fD~I~~~~~~~~~~-----~~l~~~LkpgG~lvi~~ 176 (212) T PRK13942 140 YEENAPYDRIYVTAAGPDIP-----KPLIEQLKDGGIMVIPV 176 (212) T ss_pred CCcCCCcCEEEECCCcccch-----HHHHHhhCCCcEEEEEE Confidence 54568899999877665433 35667899999988853 No 73 >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional Probab=99.66 E-value=3.5e-15 Score=125.72 Aligned_cols=110 Identities=27% Similarity=0.381 Sum_probs=86.3 Q ss_pred HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC Q psy2408 73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK----GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL 148 (298) Q Consensus 73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~----~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~ 148 (298) .+.+...+.+.+. .++.+|||+|||+|.++..+++.. +..++|+|+|+.+++.|+++. .++.+.++|+. T Consensus 71 ~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~ 143 (272) T PRK11088 71 RDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSH 143 (272) T ss_pred HHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecc Confidence 3444444444443 355789999999999999998753 247999999999999997653 35889999999 Q ss_pred CCCCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCC Q psy2408 149 NLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPL 195 (298) Q Consensus 149 ~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 195 (298) ++|+++++||+|++..+ +..++++.|+|+|||++++..+.. T Consensus 144 ~lp~~~~sfD~I~~~~~------~~~~~e~~rvLkpgG~li~~~p~~ 184 (272) T PRK11088 144 RLPFADQSLDAIIRIYA------PCKAEELARVVKPGGIVITVTPGP 184 (272) T ss_pred cCCCcCCceeEEEEecC------CCCHHHHHhhccCCCEEEEEeCCC Confidence 99998999999997653 335688999999999999987653 No 74 >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. Probab=99.66 E-value=8.3e-16 Score=118.80 Aligned_cols=135 Identities=19% Similarity=0.276 Sum_probs=97.2 Q ss_pred hCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEe Q psy2408 83 KTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWF 162 (298) Q Consensus 83 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~ 162 (298) .++-.+-.++||+|||.|.++..|+.+. .+++++|+|+..++.|+++.... +++++++.|+... .|.++||+|++ T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~-~P~~~FDLIV~ 112 (201) T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGL---PHVEWIQADVPEF-WPEGRFDLIVL 112 (201) T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----SS-EEEEEE T ss_pred hcCccccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCC-CCCCCeeEEEE Confidence 3544556799999999999999999964 58999999999999999998753 4799999999885 46799999999 Q ss_pred cccccccChH----HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEE Q psy2408 163 FESIFHMNHS----AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIK 236 (298) Q Consensus 163 ~~~l~~~~~~----~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 236 (298) +.+++++.+. .++..+...|+|||.|++.... ... ... ..+....+.+.++|++. |..++ T Consensus 113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r-------d~~----c~~--wgh~~ga~tv~~~~~~~-~~~~~ 176 (201) T PF05401_consen 113 SEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR-------DAN----CRR--WGHAAGAETVLEMLQEH-LTEVE 176 (201) T ss_dssp ES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE--------HHH----HHH--TT-S--HHHHHHHHHHH-SEEEE T ss_pred ehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec-------CCc----ccc--cCcccchHHHHHHHHHH-hhhee Confidence 9999999753 7899999999999999998654 111 111 23445677888888775 44343 No 75 >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. Probab=99.65 E-value=4.3e-15 Score=120.82 Aligned_cols=112 Identities=22% Similarity=0.237 Sum_probs=93.0 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP 151 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~ 151 (298) ......+++.+.+.++.+|||+|||+|..+..+++..+ .+|+++|+++.+++.|++++...++ ++++++++|+.... T Consensus 63 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~ 141 (215) T TIGR00080 63 PHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGW 141 (215) T ss_pred HHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCC Confidence 45567777888888999999999999999999998643 4699999999999999999999887 57999999997754 Q ss_pred CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEE Q psy2408 152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLT 191 (298) Q Consensus 152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~ 191 (298) ...++||+|++.....++ ...+.+.|+|||++++. T Consensus 142 ~~~~~fD~Ii~~~~~~~~-----~~~~~~~L~~gG~lv~~ 176 (215) T TIGR00080 142 EPLAPYDRIYVTAAGPKI-----PEALIDQLKEGGILVMP 176 (215) T ss_pred cccCCCCEEEEcCCcccc-----cHHHHHhcCcCcEEEEE Confidence 345689999987665443 34678899999999885 No 76 >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed Probab=99.65 E-value=1.8e-15 Score=121.60 Aligned_cols=125 Identities=25% Similarity=0.259 Sum_probs=98.8 Q ss_pred CCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC-CCCC--CCCCCeeEEEec Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA-LNLP--FDNDSFDGGWFF 163 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~fD~V~~~ 163 (298) ++.+|||+|||+|..+..+++.. +.+|+|+|+|+.+++.+++++...++ .++.++++|+ ..++ +++++||+|++. T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202) T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202) T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE Confidence 56799999999999999998864 56899999999999999999988776 5699999999 6655 667899999987 Q ss_pred ccccccC---------hHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcE Q psy2408 164 ESIFHMN---------HSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFEL 234 (298) Q Consensus 164 ~~l~~~~---------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 234 (298) ....+.. ...+++++.++|+|||.+++.... ... ..++.+.+++.|+.+ T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~-------~~~---------------~~~~~~~~~~~g~~~ 176 (202) T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW-------EGY---------------AEYMLEVLSAEGGFL 176 (202) T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC-------HHH---------------HHHHHHHHHhCcccc Confidence 6543222 127899999999999999997543 111 125667788888865 Q ss_pred E Q psy2408 235 I 235 (298) Q Consensus 235 ~ 235 (298) . T Consensus 177 ~ 177 (202) T PRK00121 177 V 177 (202) T ss_pred c Confidence 5 No 77 >PLN03075 nicotianamine synthase; Provisional Probab=99.65 E-value=2.9e-15 Score=124.70 Aligned_cols=105 Identities=14% Similarity=0.190 Sum_probs=87.4 Q ss_pred CCCCeEEEeCCCCCHHHHH-HHH-h-cCCeEEEEeCCHHHHHHHHHHHHh-cCCCCceEEEECCCCCCCCCCCCeeEEEe Q psy2408 87 TKGQRFIDIGCGFGLSGIR-LAK-A-KGCRVDGITISKFQQESAMKTAKA-EGLLDKVNFLHGDALNLPFDNDSFDGGWF 162 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~-l~~-~-~~~~v~~vD~s~~~l~~a~~~~~~-~~~~~~i~~~~~d~~~~~~~~~~fD~V~~ 162 (298) .++.+|+|||||.|.++.. ++. . .+.+++++|+++++++.|++.+.. .++.++++|..+|+.+.+...+.||+|++ T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296) T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296) T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE Confidence 4778999999998855443 333 2 367999999999999999999964 78888899999999886423478999999 Q ss_pred ccccccc--ChH-HHHHHHhhcccCCcEEEEEe Q psy2408 163 FESIFHM--NHS-AALNEARRVLKSGSILTLTD 192 (298) Q Consensus 163 ~~~l~~~--~~~-~~l~~~~r~LkpgG~l~i~~ 192 (298) . ++.++ +++ ++++++.+.|+|||.+++.. T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296) T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296) T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEec Confidence 9 88887 456 99999999999999999975 No 78 >PRK14968 putative methyltransferase; Provisional Probab=99.65 E-value=9.8e-15 Score=116.40 Aligned_cols=136 Identities=28% Similarity=0.419 Sum_probs=104.2 Q ss_pred HHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCc-eEEEECCCCCCCCCCCCee Q psy2408 80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDK-VNFLHGDALNLPFDNDSFD 158 (298) Q Consensus 80 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~fD 158 (298) +++.+...++.+|||+|||+|.++..++.. +.+++++|+|+.+++.+++++...++.++ +.+++.|+.+ +++.++|| T Consensus 15 l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d 92 (188) T PRK14968 15 LAENAVDKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFD 92 (188) T ss_pred HHHhhhccCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCce Confidence 333443467889999999999999999985 88999999999999999999887776433 8889999876 34456899 Q ss_pred EEEecccccccC---------------------hH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccC Q psy2408 159 GGWFFESIFHMN---------------------HS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSN 216 (298) Q Consensus 159 ~V~~~~~l~~~~---------------------~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (298) +|+++..+.... .. .+++++.++|+|||.+++..... T Consensus 93 ~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~--------------------- 151 (188) T PRK14968 93 VILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL--------------------- 151 (188) T ss_pred EEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc--------------------- Confidence 999875543211 12 68999999999999988864321 Q ss_pred CCCcchHHHHHHhCCCcEEEEEe Q psy2408 217 FILVEHYPDLLNKSGFELIKIDD 239 (298) Q Consensus 217 ~~~~~~~~~~l~~~Gf~~~~~~~ 239 (298) ...+.+..+++++||++..... T Consensus 152 -~~~~~l~~~~~~~g~~~~~~~~ 173 (188) T PRK14968 152 -TGEDEVLEYLEKLGFEAEVVAE 173 (188) T ss_pred -CCHHHHHHHHHHCCCeeeeeee Confidence 1234677899999998776544 No 79 >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... Probab=99.64 E-value=1.3e-14 Score=113.45 Aligned_cols=119 Identities=27% Similarity=0.363 Sum_probs=93.9 Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC Q psy2408 69 FAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA 147 (298) Q Consensus 69 ~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~ 147 (298) +..+..-+.+.+... ++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.+++++...++.. ++++..|. T Consensus 16 ~d~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~ 90 (170) T PF05175_consen 16 LDAGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDL 90 (170) T ss_dssp HHHHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESST T ss_pred CCHHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccc Confidence 334444444444433 67799999999999999999964 3479999999999999999999999876 99999999 Q ss_pred CCCCCCCCCeeEEEecccccccCh----H--HHHHHHhhcccCCcEEEEEeC Q psy2408 148 LNLPFDNDSFDGGWFFESIFHMNH----S--AALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 148 ~~~~~~~~~fD~V~~~~~l~~~~~----~--~~l~~~~r~LkpgG~l~i~~~ 193 (298) .+. .++++||+|+++-.++.-.+ . .+++.+.+.|+|||.+++... T Consensus 91 ~~~-~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170) T PF05175_consen 91 FEA-LPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170) T ss_dssp TTT-CCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE T ss_pred ccc-ccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee Confidence 774 34689999999987766655 2 899999999999999977543 No 80 >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed Probab=99.64 E-value=5.4e-15 Score=122.90 Aligned_cols=120 Identities=25% Similarity=0.298 Sum_probs=91.8 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccc Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFES 165 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 165 (298) .++.+|||+|||+|.++..+++ .++ +|+|+|+|+.+++.|++++...++..++.+..+| .+||+|+++.. T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~-~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~--------~~fD~Vvani~ 188 (250) T PRK00517 118 LPGKTVLDVGCGSGILAIAAAK-LGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD--------LKADVIVANIL 188 (250) T ss_pred CCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC--------CCcCEEEEcCc Confidence 5788999999999999887776 444 6999999999999999999887764444433322 27999998643 Q ss_pred ccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeC Q psy2408 166 IFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDI 240 (298) Q Consensus 166 l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 240 (298) . ... .+++++.++|+|||+++++..... ..+++...+++.||.++..... T Consensus 189 ~---~~~~~l~~~~~~~LkpgG~lilsgi~~~----------------------~~~~v~~~l~~~Gf~~~~~~~~ 239 (250) T PRK00517 189 A---NPLLELAPDLARLLKPGGRLILSGILEE----------------------QADEVLEAYEEAGFTLDEVLER 239 (250) T ss_pred H---HHHHHHHHHHHHhcCCCcEEEEEECcHh----------------------hHHHHHHHHHHCCCEEEEEEEe Confidence 2 112 889999999999999999865411 1346778899999998876553 No 81 >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. Probab=99.63 E-value=1.7e-15 Score=119.07 Aligned_cols=187 Identities=18% Similarity=0.177 Sum_probs=125.2 Q ss_pred hhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCC------CCCeEEEeCCCCCHHHHH Q psy2408 32 KKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSIT------KGQRFIDIGCGFGLSGIR 105 (298) Q Consensus 32 ~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~vLDiGcG~G~~~~~ 105 (298) .+...+||+.. .+.-+.++|+.-+ +...--.-.+.++..+... ...++||+|+|-|+.+.. T Consensus 6 y~~a~~YW~~v-~atvdGMLGG~~~------------is~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~ 72 (218) T PF05891_consen 6 YEKAKEYWENV-PATVDGMLGGFGH------------ISRIDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKG 72 (218) T ss_dssp HHHHHHHHHTS--SSHHHHTTT-GG------------GHHHHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHH T ss_pred HHHHHHHHcCC-CCCccccccCCCC------------CChHHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHH Confidence 34567899988 8888888887532 2233334455566665443 346999999999999988 Q ss_pred HHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH---HHHHHHhhcc Q psy2408 106 LAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AALNEARRVL 182 (298) Q Consensus 106 l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~L 182 (298) +....-.+|..||+.+.+++.|++.+.... ....++.+..++++..+.++||+|++.+++.|+.|. .+|+++...| T Consensus 73 lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L 151 (218) T PF05891_consen 73 LLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQAL 151 (218) T ss_dssp TCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHE T ss_pred HHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhC Confidence 866455699999999999999998765421 234678899999885456799999999999999998 9999999999 Q ss_pred cCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEe Q psy2408 183 KSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDD 239 (298) Q Consensus 183 kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 239 (298) +|+|.+++-+-....... . +...-..-..+.+.+++++++||++++.... T Consensus 152 ~~~G~IvvKEN~~~~~~~---~----~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~ 201 (218) T PF05891_consen 152 KPNGVIVVKENVSSSGFD---E----FDEEDSSVTRSDEHFRELFKQAGLRLVKEEK 201 (218) T ss_dssp EEEEEEEEEEEEESSSEE---E----EETTTTEEEEEHHHHHHHHHHCT-EEEEEEE T ss_pred cCCcEEEEEecCCCCCCc---c----cCCccCeeecCHHHHHHHHHHcCCEEEEecc Confidence 999999997655332110 0 0011112234567899999999999987553 No 82 >TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases Probab=99.63 E-value=2.4e-15 Score=128.21 Aligned_cols=148 Identities=17% Similarity=0.118 Sum_probs=103.7 Q ss_pred HhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCe Q psy2408 36 ATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCR 113 (298) Q Consensus 36 ~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~ 113 (298) +=+||..+...|+.+...+. |+....+. .........+...+ +++.+|||+|||+|..+..+++.. +.+ T Consensus 20 ~~~yd~~G~~lf~~i~~~pe---Yy~tr~E~----~il~~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~ 90 (301) T TIGR03438 20 KYFYDARGSELFEQICELPE---YYPTRTEA----AILERHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPAR 90 (301) T ss_pred hhcccchHHHHHHHHHCCCc---cccHHHHH----HHHHHHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCe Confidence 44788775677877754332 33321111 22334444455554 466799999999999999999874 579 Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-CCCCCC----CeeEEEecccccccChH---HHHHHHhhcccCC Q psy2408 114 VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-LPFDND----SFDGGWFFESIFHMNHS---AALNEARRVLKSG 185 (298) Q Consensus 114 v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~----~fD~V~~~~~l~~~~~~---~~l~~~~r~Lkpg 185 (298) |+++|+|++|++.+++++.......++.++++|+.+ ++++.. ...++++..++.+++.. .+|++++++|+|| T Consensus 91 ~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pg 170 (301) T TIGR03438 91 YVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPG 170 (301) T ss_pred EEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCC Confidence 999999999999999987754322357788999976 343322 23344555678887764 8999999999999 Q ss_pred cEEEEEe Q psy2408 186 SILTLTD 192 (298) Q Consensus 186 G~l~i~~ 192 (298) |.+++.. T Consensus 171 G~~lig~ 177 (301) T TIGR03438 171 GGLLIGV 177 (301) T ss_pred CEEEEec Confidence 9998854 No 83 >PTZ00146 fibrillarin; Provisional Probab=99.63 E-value=2e-14 Score=119.24 Aligned_cols=150 Identities=15% Similarity=0.082 Sum_probs=102.4 Q ss_pred HHHHHHHH---HhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC Q psy2408 74 DKLSRIMI---NKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL 148 (298) Q Consensus 74 ~~~~~~l~---~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~ 148 (298) ..+...++ +.+.+.++.+|||+|||+|.++..++... ...|++||+|+.+++.....+... .|+.++..|+. T Consensus 115 SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~ 191 (293) T PTZ00146 115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDAR 191 (293) T ss_pred cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCcc Confidence 45555553 44567899999999999999999999975 358999999998765555544332 46889999986 Q ss_pred CC---CCCCCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchH Q psy2408 149 NL---PFDNDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHY 223 (298) Q Consensus 149 ~~---~~~~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (298) .. ..+.++||+|++... .++. .++.++.++|||||.|+|.......... ...... +. +++ T Consensus 192 ~p~~y~~~~~~vDvV~~Dva---~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g--~~pe~~---------f~-~ev 256 (293) T PTZ00146 192 YPQKYRMLVPMVDVIFADVA---QPDQARIVALNAQYFLKNGGHFIISIKANCIDST--AKPEVV---------FA-SEV 256 (293) T ss_pred ChhhhhcccCCCCEEEEeCC---CcchHHHHHHHHHHhccCCCEEEEEEeccccccC--CCHHHH---------HH-HHH Confidence 42 223468999988663 2444 6667999999999999995322111111 000000 11 234 Q ss_pred HHHHHhCCCcEEEEEeCCC Q psy2408 224 PDLLNKSGFELIKIDDITS 242 (298) Q Consensus 224 ~~~l~~~Gf~~~~~~~~~~ 242 (298) +.|+++||++++..++.. T Consensus 257 -~~L~~~GF~~~e~v~L~P 274 (293) T PTZ00146 257 -QKLKKEGLKPKEQLTLEP 274 (293) T ss_pred -HHHHHcCCceEEEEecCC Confidence 789999999988877643 No 84 >TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. Probab=99.62 E-value=1.2e-14 Score=123.26 Aligned_cols=136 Identities=21% Similarity=0.202 Sum_probs=100.2 Q ss_pred HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC Q psy2408 75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN 154 (298) Q Consensus 75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 154 (298) ++...+++... .++.+|||+|||+|.++..+++....+|+++|+|+.+++.|++++...++..++.+...+... ... T Consensus 147 ~l~l~~l~~~~-~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~ 223 (288) T TIGR00406 147 SLCLEWLEDLD-LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIE 223 (288) T ss_pred HHHHHHHHhhc-CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccC Confidence 33333444443 467899999999999998888743358999999999999999999988887777777776433 235 Q ss_pred CCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCc Q psy2408 155 DSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFE 233 (298) Q Consensus 155 ~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 233 (298) ++||+|+++.... .. .++.++.++|+|||+++++.+... ..+++.+.+++. |. T Consensus 224 ~~fDlVvan~~~~---~l~~ll~~~~~~LkpgG~li~sgi~~~----------------------~~~~v~~~~~~~-f~ 277 (288) T TIGR00406 224 GKADVIVANILAE---VIKELYPQFSRLVKPGGWLILSGILET----------------------QAQSVCDAYEQG-FT 277 (288) T ss_pred CCceEEEEecCHH---HHHHHHHHHHHHcCCCcEEEEEeCcHh----------------------HHHHHHHHHHcc-Cc Confidence 7899999875432 23 889999999999999999765411 123566667665 87 Q ss_pred EEEEEe Q psy2408 234 LIKIDD 239 (298) Q Consensus 234 ~~~~~~ 239 (298) ++.... T Consensus 278 ~~~~~~ 283 (288) T TIGR00406 278 VVEIRQ 283 (288) T ss_pred eeeEec Confidence 776543 No 85 >KOG2361|consensus Probab=99.61 E-value=6.9e-16 Score=121.62 Aligned_cols=146 Identities=19% Similarity=0.274 Sum_probs=110.1 Q ss_pred eEEEeCCCCCHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC----CCCCCCeeEEEec Q psy2408 91 RFIDIGCGFGLSGIRLAKAK---GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL----PFDNDSFDGGWFF 163 (298) Q Consensus 91 ~vLDiGcG~G~~~~~l~~~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~V~~~ 163 (298) +|||+|||.|.....+.+.. +..++++|.|+..++..+++..... .++...+.|+... +++.+++|.|++. T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264) T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264) T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE Confidence 89999999999999998863 3699999999999999988755332 3455555565432 5567999999999 Q ss_pred ccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCC----Chh---HHHHHHHhhcccCCCCcchHHHHHHhCCCc Q psy2408 164 ESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSK----NDN---KFKEYVKKNIHSNFILVEHYPDLLNKSGFE 233 (298) Q Consensus 164 ~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 233 (298) ++|..++.. .++.++.++|||||.|++-++...+-.- ... .............+++.+++..++.++||. T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~ 231 (264) T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFE 231 (264) T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccc Confidence 999999766 9999999999999999999988543100 000 000111223345789999999999999998 Q ss_pred EEEEE Q psy2408 234 LIKID 238 (298) Q Consensus 234 ~~~~~ 238 (298) .++.. T Consensus 232 ~~~~~ 236 (264) T KOG2361|consen 232 EVQLE 236 (264) T ss_pred hhccc Confidence 77654 No 86 >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional Probab=99.61 E-value=2e-14 Score=124.62 Aligned_cols=117 Identities=19% Similarity=0.262 Sum_probs=93.8 Q ss_pred HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCC--CceEEEECCCCCCC Q psy2408 75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLL--DKVNFLHGDALNLP 151 (298) Q Consensus 75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~i~~~~~d~~~~~ 151 (298) .-.+.+++.++...+.+|||+|||+|.++..+++.. ..+|+++|.|+.+++.++++++..+.. .+++++..|+... T Consensus 215 ~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~- 293 (378) T PRK15001 215 IGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG- 293 (378) T ss_pred hHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc- Confidence 345557777765556799999999999999999864 679999999999999999998876643 3688999988653 Q ss_pred CCCCCeeEEEeccccccc---ChH---HHHHHHhhcccCCcEEEEEe Q psy2408 152 FDNDSFDGGWFFESIFHM---NHS---AALNEARRVLKSGSILTLTD 192 (298) Q Consensus 152 ~~~~~fD~V~~~~~l~~~---~~~---~~l~~~~r~LkpgG~l~i~~ 192 (298) ++.++||+|+++-.++.. .+. .+++.+.++|+|||.+++.. T Consensus 294 ~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378) T PRK15001 294 VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378) T ss_pred CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE Confidence 344689999998666543 333 89999999999999999974 No 87 >KOG1541|consensus Probab=99.60 E-value=9.5e-15 Score=113.49 Aligned_cols=117 Identities=24% Similarity=0.336 Sum_probs=93.4 Q ss_pred HHHHHHHHHHHHhCCCCC--CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC Q psy2408 71 QGSDKLSRIMINKTSITK--GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL 148 (298) Q Consensus 71 ~~~~~~~~~l~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~ 148 (298) ..+.++....++.+.++. +.-|||||||+|..+..+.. .|+.++|+|+|+.|++.|.++--+ -.++.+|+- T Consensus 31 ~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~-~Gh~wiGvDiSpsML~~a~~~e~e------gdlil~DMG 103 (270) T KOG1541|consen 31 LIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSD-SGHQWIGVDISPSMLEQAVERELE------GDLILCDMG 103 (270) T ss_pred eehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheecc-CCceEEeecCCHHHHHHHHHhhhh------cCeeeeecC Confidence 345667777777777665 67899999999999988887 689999999999999999974222 246777774 Q ss_pred -CCCCCCCCeeEEEecccccccCh-------H-----HHHHHHhhcccCCcEEEEEeCC Q psy2408 149 -NLPFDNDSFDGGWFFESIFHMNH-------S-----AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 149 -~~~~~~~~fD~V~~~~~l~~~~~-------~-----~~l~~~~r~LkpgG~l~i~~~~ 194 (298) -+||+.++||.|++..+++++-+ | .|+..++.+|++|++.++.-+. T Consensus 104 ~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270) T KOG1541|consen 104 EGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270) T ss_pred CCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc Confidence 56999999999999888766532 2 7788999999999999887554 No 88 >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA. Probab=99.59 E-value=1.3e-14 Score=115.97 Aligned_cols=106 Identities=27% Similarity=0.294 Sum_probs=87.2 Q ss_pred CCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC---CCCCCeeEEEec Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP---FDNDSFDGGWFF 163 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V~~~ 163 (298) ...+|||||||+|..+..+++.. +..++|+|+++.+++.|++++...++. +++++++|+.+++ ++++++|.|+++ T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194) T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194) T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE Confidence 45599999999999999999863 679999999999999999999888875 7999999997652 455689999987 Q ss_pred ccccccCh---------HHHHHHHhhcccCCcEEEEEeCC Q psy2408 164 ESIFHMNH---------SAALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 164 ~~l~~~~~---------~~~l~~~~r~LkpgG~l~i~~~~ 194 (298) ....+... +.+++++.++|||||.|++.... T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194) T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194) T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC Confidence 65433221 26899999999999999887533 No 89 >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] Probab=99.59 E-value=4.4e-14 Score=110.83 Aligned_cols=114 Identities=21% Similarity=0.205 Sum_probs=99.0 Q ss_pred HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC Q psy2408 73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF 152 (298) Q Consensus 73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 152 (298) ...+...+++.+.++++.+|||||||+|..+..+++ ...+|+.+|..++..+.|++++...|+. |+.++++|...--. T Consensus 57 ~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~-l~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~ 134 (209) T COG2518 57 APHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLAR-LVGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWP 134 (209) T ss_pred CcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHH-HhCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCC Confidence 345778889999999999999999999999999999 4559999999999999999999999985 49999999977422 Q ss_pred CCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 153 ~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) +...||.|+...+...+|. .+.+.|+|||++++-.- T Consensus 135 ~~aPyD~I~Vtaaa~~vP~-----~Ll~QL~~gGrlv~PvG 170 (209) T COG2518 135 EEAPYDRIIVTAAAPEVPE-----ALLDQLKPGGRLVIPVG 170 (209) T ss_pred CCCCcCEEEEeeccCCCCH-----HHHHhcccCCEEEEEEc Confidence 4589999999998887777 57788999999998654 No 90 >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. Probab=99.58 E-value=9.4e-14 Score=115.93 Aligned_cols=140 Identities=26% Similarity=0.314 Sum_probs=106.2 Q ss_pred HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC Q psy2408 73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP 151 (298) Q Consensus 73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~ 151 (298) ...+...+++.+. ..+.+|||+|||+|..+..++... +.+++|+|+|+.+++.++..+...++. ++.++++|+.+ + T Consensus 73 ~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~-~ 149 (251) T TIGR03534 73 TEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE-P 149 (251) T ss_pred hHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc-c Confidence 3455666666654 345699999999999999999864 579999999999999999999888774 69999999977 4 Q ss_pred CCCCCeeEEEecccccc------cC--------------------hH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhH Q psy2408 152 FDNDSFDGGWFFESIFH------MN--------------------HS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNK 204 (298) Q Consensus 152 ~~~~~fD~V~~~~~l~~------~~--------------------~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~ 204 (298) +++++||+|+++-.... +. .. .+++++.++|+|||.+++.... T Consensus 150 ~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~---------- 219 (251) T TIGR03534 150 LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY---------- 219 (251) T ss_pred CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc---------- Confidence 55689999998532211 11 11 5688999999999999885211 Q ss_pred HHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEE Q psy2408 205 FKEYVKKNIHSNFILVEHYPDLLNKSGFELIKID 238 (298) Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 238 (298) ...+++.++++++||..+... T Consensus 220 -------------~~~~~~~~~l~~~gf~~v~~~ 240 (251) T TIGR03534 220 -------------DQGEAVRALFEAAGFADVETR 240 (251) T ss_pred -------------cHHHHHHHHHHhCCCCceEEE Confidence 123467888999999876643 No 91 >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] Probab=99.58 E-value=5.1e-14 Score=116.88 Aligned_cols=137 Identities=26% Similarity=0.357 Sum_probs=103.1 Q ss_pred HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC Q psy2408 75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD 153 (298) Q Consensus 75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 153 (298) .++-..++... .++.+|||+|||+|.+++..++ .|+ +++|+|+++..++.+++++..++++..+.....+....+ . T Consensus 150 ~lcL~~Le~~~-~~g~~vlDvGcGSGILaIAa~k-LGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~ 226 (300) T COG2264 150 SLCLEALEKLL-KKGKTVLDVGCGSGILAIAAAK-LGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-E 226 (300) T ss_pred HHHHHHHHHhh-cCCCEEEEecCChhHHHHHHHH-cCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-c Confidence 34444444443 4889999999999999999988 676 699999999999999999999988653334444443333 2 Q ss_pred CCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCC Q psy2408 154 NDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSG 231 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 231 (298) .++||+|+++- +.++ .+...+.+.++|||+++++..... ..+.+.+.++++| T Consensus 227 ~~~~DvIVANI----LA~vl~~La~~~~~~lkpgg~lIlSGIl~~----------------------q~~~V~~a~~~~g 280 (300) T COG2264 227 NGPFDVIVANI----LAEVLVELAPDIKRLLKPGGRLILSGILED----------------------QAESVAEAYEQAG 280 (300) T ss_pred cCcccEEEehh----hHHHHHHHHHHHHHHcCCCceEEEEeehHh----------------------HHHHHHHHHHhCC Confidence 36999999865 2355 888999999999999999864311 0246778888999 Q ss_pred CcEEEEEeC Q psy2408 232 FELIKIDDI 240 (298) Q Consensus 232 f~~~~~~~~ 240 (298) |.++..... T Consensus 281 f~v~~~~~~ 289 (300) T COG2264 281 FEVVEVLER 289 (300) T ss_pred CeEeEEEec Confidence 999887654 No 92 >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. Probab=99.58 E-value=1.7e-13 Score=115.74 Aligned_cols=104 Identities=23% Similarity=0.247 Sum_probs=84.1 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccc Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFES 165 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 165 (298) .++.+|||+|||+|.++..++... +.+++++|+|+.+++.|++++...++.+++.++++|+.+ +++.++||+|+++-- T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPP 198 (284) T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPP 198 (284) T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCC Confidence 345799999999999999999864 679999999999999999999998887789999999865 234568999998511 Q ss_pred ------c-------cccC------------hH-HHHHHHhhcccCCcEEEEE Q psy2408 166 ------I-------FHMN------------HS-AALNEARRVLKSGSILTLT 191 (298) Q Consensus 166 ------l-------~~~~------------~~-~~l~~~~r~LkpgG~l~i~ 191 (298) + .|-+ .. .+++++.++|+|||++++. T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284) T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284) T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE Confidence 1 1111 11 6788999999999998874 No 93 >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] Probab=99.58 E-value=2.1e-13 Score=104.63 Aligned_cols=140 Identities=24% Similarity=0.278 Sum_probs=111.9 Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC Q psy2408 72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL 150 (298) Q Consensus 72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~ 150 (298) ..+++....+..+.+.++++++|||||+|..+..++.. +.++|+++|-++++++..++++.+.++ +|+.++.+++.+. T Consensus 18 TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~ 96 (187) T COG2242 18 TKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEA 96 (187) T ss_pred cHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHh Confidence 44677777889999999999999999999999999954 467999999999999999999999995 6899999999775 Q ss_pred CCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHh Q psy2408 151 PFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNK 229 (298) Q Consensus 151 ~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 229 (298) -....++|.||.... ... .+++.+...|+|||++++......+ .....+.+++ T Consensus 97 L~~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitlE~----------------------~~~a~~~~~~ 150 (187) T COG2242 97 LPDLPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITLET----------------------LAKALEALEQ 150 (187) T ss_pred hcCCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecHHH----------------------HHHHHHHHHH Confidence 111237999998776 233 8999999999999999997544211 1234567888 Q ss_pred CCC-cEEEEE Q psy2408 230 SGF-ELIKID 238 (298) Q Consensus 230 ~Gf-~~~~~~ 238 (298) .|+ +++.+. T Consensus 151 ~g~~ei~~v~ 160 (187) T COG2242 151 LGGREIVQVQ 160 (187) T ss_pred cCCceEEEEE Confidence 898 555543 No 94 >COG4123 Predicted O-methyltransferase [General function prediction only] Probab=99.57 E-value=2.8e-14 Score=115.34 Aligned_cols=142 Identities=20% Similarity=0.309 Sum_probs=110.2 Q ss_pred HHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC--CCCCCC Q psy2408 80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL--PFDNDS 156 (298) Q Consensus 80 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~ 156 (298) +.....+....+|||+|||+|.++..++++. .+++++||+++.+.+.|+++++.+++..++++++.|+.++ .....+ T Consensus 36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~ 115 (248) T COG4123 36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFAS 115 (248) T ss_pred HHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccc Confidence 3444555567899999999999999999984 5899999999999999999999999999999999999987 334467 Q ss_pred eeEEEeccccccc----------------C--hH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCC Q psy2408 157 FDGGWFFESIFHM----------------N--HS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNF 217 (298) Q Consensus 157 fD~V~~~~~l~~~----------------~--~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (298) ||+|+|+--.+-. . +. ++++.+.++|||||.+.+.-.. . T Consensus 116 fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~--------e-------------- 173 (248) T COG4123 116 FDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP--------E-------------- 173 (248) T ss_pred cCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH--------H-------------- Confidence 9999995433221 1 12 8889999999999999986433 1 Q ss_pred CCcchHHHHHHhCCCcEEEEEeCCCCc Q psy2408 218 ILVEHYPDLLNKSGFELIKIDDITSHV 244 (298) Q Consensus 218 ~~~~~~~~~l~~~Gf~~~~~~~~~~~~ 244 (298) ...++.+++.+.+|.+.....+-... T Consensus 174 -rl~ei~~~l~~~~~~~k~i~~V~p~~ 199 (248) T COG4123 174 -RLAEIIELLKSYNLEPKRIQFVYPKI 199 (248) T ss_pred -HHHHHHHHHHhcCCCceEEEEecCCC Confidence 12366777777777777666554443 No 95 >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed Probab=99.57 E-value=1.1e-13 Score=112.40 Aligned_cols=113 Identities=25% Similarity=0.193 Sum_probs=92.0 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD 153 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 153 (298) ......++..+.+.++.+|||+|||+|..+..+++. ..+++++|+++.+++.+++++...++. +++++.+|..+...+ T Consensus 64 p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~ 141 (212) T PRK00312 64 PYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPA 141 (212) T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCc Confidence 455667777888889999999999999999888774 458999999999999999999988774 599999998653223 Q ss_pred CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) .++||+|++...+.++ .+.+.+.|+|||++++... T Consensus 142 ~~~fD~I~~~~~~~~~-----~~~l~~~L~~gG~lv~~~~ 176 (212) T PRK00312 142 YAPFDRILVTAAAPEI-----PRALLEQLKEGGILVAPVG 176 (212) T ss_pred CCCcCEEEEccCchhh-----hHHHHHhcCCCcEEEEEEc Confidence 4789999987766544 3467789999999988654 No 96 >PRK07402 precorrin-6B methylase; Provisional Probab=99.56 E-value=1.2e-13 Score=110.69 Aligned_cols=118 Identities=18% Similarity=0.144 Sum_probs=92.7 Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC- Q psy2408 72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN- 149 (298) Q Consensus 72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~- 149 (298) ...+....++..+.+.++.+|||+|||+|.++..+++. .+.+|+++|+|+.+++.+++++...++. +++++.+|+.+ T Consensus 24 t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~ 102 (196) T PRK07402 24 TKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPEC 102 (196) T ss_pred CHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHH Confidence 34556666788888888899999999999999999865 3579999999999999999999887774 69999999865 Q ss_pred CCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCC Q psy2408 150 LPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 150 ~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~ 194 (298) ++.....+|.++... ..+. .+++++.++|+|||++++.... T Consensus 103 ~~~~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196) T PRK07402 103 LAQLAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196) T ss_pred HhhCCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec Confidence 222123467765422 2344 8999999999999999998654 No 97 >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A .... Probab=99.56 E-value=1.3e-14 Score=106.52 Aligned_cols=105 Identities=30% Similarity=0.387 Sum_probs=87.8 Q ss_pred CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--CCCCCeeEEEecccc Q psy2408 89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--FDNDSFDGGWFFESI 166 (298) Q Consensus 89 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~~l 166 (298) |.+|||+|||+|.++..+++....+++|+|+++..++.++.++...++..+++++++|+.+.. +++++||+|+++-.. T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117) T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117) T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC Confidence 568999999999999999985448999999999999999999999988788999999998764 678999999997666 Q ss_pred cccC--------hH-HHHHHHhhcccCCcEEEEEeC Q psy2408 167 FHMN--------HS-AALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 167 ~~~~--------~~-~~l~~~~r~LkpgG~l~i~~~ 193 (298) .... .. .+++++.++|+|||.+++..+ T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117) T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117) T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC Confidence 5321 12 889999999999999988643 No 98 >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] Probab=99.55 E-value=1.1e-13 Score=110.84 Aligned_cols=112 Identities=21% Similarity=0.291 Sum_probs=100.2 Q ss_pred HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC Q psy2408 77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN 154 (298) Q Consensus 77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 154 (298) ...|+..+++.||++|||.|.|+|.++.+|+... .++|+.+|+.+++++.|+++++..++.+++.+..+|+.+.-.+ T Consensus 83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~- 161 (256) T COG2519 83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE- 161 (256) T ss_pred HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc- Confidence 5678889999999999999999999999999863 3699999999999999999999999988899999999986554 Q ss_pred CCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCC Q psy2408 155 DSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 155 ~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~ 194 (298) +.||+|+. -+++| .++..+.++|+|||.+++..+. T Consensus 162 ~~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256) T COG2519 162 EDVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPT 197 (256) T ss_pred cccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCC Confidence 48999865 68899 9999999999999999987655 No 99 >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional Probab=99.55 E-value=9.6e-14 Score=119.85 Aligned_cols=115 Identities=25% Similarity=0.226 Sum_probs=93.8 Q ss_pred HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC--CCCCC Q psy2408 79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL--PFDND 155 (298) Q Consensus 79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~ 155 (298) .+++.+....+..+||||||+|..+..+|+.. +..++|+|+++.++..+.+++...++. |+.++++|+..+ .++++ T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~~~~ 191 (390) T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELLPSN 191 (390) T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhCCCC Confidence 44555555566799999999999999999874 679999999999999999999988884 699999998764 46789 Q ss_pred CeeEEEecccccccCh-------HHHHHHHhhcccCCcEEEEEeCC Q psy2408 156 SFDGGWFFESIFHMNH-------SAALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 156 ~fD~V~~~~~l~~~~~-------~~~l~~~~r~LkpgG~l~i~~~~ 194 (298) ++|.|++....-+... +.+++++.|+|+|||.+.+.+-. T Consensus 192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390) T PRK14121 192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390) T ss_pred ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC Confidence 9999998655433222 27999999999999999996543 No 100 >TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. Probab=99.55 E-value=3.5e-13 Score=114.11 Aligned_cols=119 Identities=18% Similarity=0.163 Sum_probs=91.4 Q ss_pred HHHHHHHHHHhCC-CCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC Q psy2408 73 SDKLSRIMINKTS-ITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL 150 (298) Q Consensus 73 ~~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~ 150 (298) .+.++..++..+. ..++.+|||+|||+|.++..++... +.+++++|+|+.+++.|++++...++..++.++++|+.+ T Consensus 98 te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~- 176 (284) T TIGR00536 98 TEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE- 176 (284) T ss_pred cHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc- Confidence 3455555555442 2233699999999999999999864 579999999999999999999988886679999999876 Q ss_pred CCCCCCeeEEEec-------------ccccccC------------hH-HHHHHHhhcccCCcEEEEEe Q psy2408 151 PFDNDSFDGGWFF-------------ESIFHMN------------HS-AALNEARRVLKSGSILTLTD 192 (298) Q Consensus 151 ~~~~~~fD~V~~~-------------~~l~~~~------------~~-~~l~~~~r~LkpgG~l~i~~ 192 (298) +++.++||+|+++ .++.|-+ .. .++.++.+.|+|||++++.. T Consensus 177 ~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284) T TIGR00536 177 PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284) T ss_pred cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE Confidence 3444589999985 2223322 22 78899999999999987753 No 101 >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... Probab=99.54 E-value=2.6e-13 Score=112.44 Aligned_cols=140 Identities=21% Similarity=0.231 Sum_probs=106.1 Q ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC Q psy2408 78 RIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS 156 (298) Q Consensus 78 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 156 (298) ..+......++..+|+|||+|+|.++..+++. ++.+++.+|+ |..++.+++ .++++++.+|+. -++|. T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f-~~~P~-- 158 (241) T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF-DPLPV-- 158 (241) T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT-TCCSS-- T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHH-hhhcc-- Confidence 56667777778889999999999999999987 4789999998 888888887 368999999998 46664 Q ss_pred eeEEEecccccccChH---HHHHHHhhcccCC--cEEEEEeCCCCCCCCChhHH--HHHHH----hhcccCCCCcchHHH Q psy2408 157 FDGGWFFESIFHMNHS---AALNEARRVLKSG--SILTLTDLPLLSVSKNDNKF--KEYVK----KNIHSNFILVEHYPD 225 (298) Q Consensus 157 fD~V~~~~~l~~~~~~---~~l~~~~r~Lkpg--G~l~i~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~ 225 (298) +|++++.+++|++++. .+|+++++.|+|| |+|+|.++........+... ..... ......-++.++|++ T Consensus 159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~~~ 238 (241) T PF00891_consen 159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEWEA 238 (241) T ss_dssp ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHHHH T ss_pred ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHHHH Confidence 9999999999999988 9999999999999 99999998876654422221 01111 122256677888888 Q ss_pred HHH Q psy2408 226 LLN 228 (298) Q Consensus 226 ~l~ 228 (298) +|+ T Consensus 239 ll~ 241 (241) T PF00891_consen 239 LLK 241 (241) T ss_dssp HHH T ss_pred HhC Confidence 764 No 102 >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. Probab=99.54 E-value=1.2e-13 Score=112.84 Aligned_cols=139 Identities=25% Similarity=0.344 Sum_probs=108.1 Q ss_pred HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC Q psy2408 75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF 152 (298) Q Consensus 75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 152 (298) .-...|+..+++.||.+|||.|.|+|.++..|++.. ..+|+.+|+.++..+.|++.++..++.+++.+.+.|+.+-.+ T Consensus 27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~ 106 (247) T PF08704_consen 27 KDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF 106 (247) T ss_dssp HHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-- T ss_pred chHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc Confidence 346678889999999999999999999999999874 469999999999999999999999999899999999975433 Q ss_pred C---CCCeeEEEecccccccChH-HHHHHHhhcc-cCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHH Q psy2408 153 D---NDSFDGGWFFESIFHMNHS-AALNEARRVL-KSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLL 227 (298) Q Consensus 153 ~---~~~fD~V~~~~~l~~~~~~-~~l~~~~r~L-kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 227 (298) + ++.+|.|++ -+++| .++..+.++| +|||++++..++. .. .......| T Consensus 107 ~~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~i-------eQ---------------v~~~~~~L 159 (247) T PF08704_consen 107 DEELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCI-------EQ---------------VQKTVEAL 159 (247) T ss_dssp STT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSH-------HH---------------HHHHHHHH T ss_pred cccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCH-------HH---------------HHHHHHHH Confidence 2 367999865 67899 9999999999 8999999876661 11 22445677 Q ss_pred HhCCCcEEEEEeC Q psy2408 228 NKSGFELIKIDDI 240 (298) Q Consensus 228 ~~~Gf~~~~~~~~ 240 (298) ++.||..++..++ T Consensus 160 ~~~gf~~i~~~Ev 172 (247) T PF08704_consen 160 REHGFTDIETVEV 172 (247) T ss_dssp HHTTEEEEEEEEE T ss_pred HHCCCeeeEEEEE Confidence 8899987765543 No 103 >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional Probab=99.54 E-value=1.7e-13 Score=118.25 Aligned_cols=114 Identities=21% Similarity=0.237 Sum_probs=91.2 Q ss_pred HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCC Q psy2408 77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDND 155 (298) Q Consensus 77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 155 (298) .+.+++.+......+|||+|||+|.++..+++.. +.+|+++|+|+.+++.+++++...++. ..++..|+... ..+ T Consensus 185 t~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~--~~~ 260 (342) T PRK09489 185 SQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD--IKG 260 (342) T ss_pred HHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc--cCC Confidence 4455555554445689999999999999999864 569999999999999999999988764 56778887653 257 Q ss_pred CeeEEEecccccccC-----hH-HHHHHHhhcccCCcEEEEEeCC Q psy2408 156 SFDGGWFFESIFHMN-----HS-AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 156 ~fD~V~~~~~l~~~~-----~~-~~l~~~~r~LkpgG~l~i~~~~ 194 (298) +||+|+++-.++... .. .+++++.+.|+|||.+++.... T Consensus 261 ~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342) T PRK09489 261 RFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342) T ss_pred CccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC Confidence 899999998877532 22 9999999999999999987544 No 104 >PHA03411 putative methyltransferase; Provisional Probab=99.53 E-value=5.3e-13 Score=109.55 Aligned_cols=126 Identities=8% Similarity=0.089 Sum_probs=94.2 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccc Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFES 165 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 165 (298) .++.+|||+|||+|.++..++... +.+|+++|+|+.+++.+++++ +++.++++|+.++. ..++||+|+++-. T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~-~~~kFDlIIsNPP 135 (279) T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFE-SNEKFDVVISNPP 135 (279) T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhc-ccCCCcEEEEcCC Confidence 345699999999999998887754 579999999999999998763 25889999998875 3468999999887 Q ss_pred ccccChH---------------------HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHH Q psy2408 166 IFHMNHS---------------------AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYP 224 (298) Q Consensus 166 l~~~~~~---------------------~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (298) +.+.+.. .++..+..+|+|+|.+.+.-... .....-.+.++++ T Consensus 136 F~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~----------------~~y~~sl~~~~y~ 199 (279) T PHA03411 136 FGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR----------------PYYDGTMKSNKYL 199 (279) T ss_pred ccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc----------------ccccccCCHHHHH Confidence 7765321 35566678889999776651110 0112235677888 Q ss_pred HHHHhCCCcEE Q psy2408 225 DLLNKSGFELI 235 (298) Q Consensus 225 ~~l~~~Gf~~~ 235 (298) .+|+++||... T Consensus 200 ~~l~~~g~~~~ 210 (279) T PHA03411 200 KWSKQTGLVTY 210 (279) T ss_pred HHHHhcCcEec Confidence 99999998643 No 105 >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional Probab=99.53 E-value=6.1e-13 Score=112.56 Aligned_cols=139 Identities=27% Similarity=0.328 Sum_probs=102.9 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF 152 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 152 (298) +.+.+.++......++.+|||+|||+|..+..++... ..+++++|+|+.+++.+++++. .....++.++++|+... + T Consensus 94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~-~ 171 (275) T PRK09328 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEP-L 171 (275) T ss_pred HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCc-C Confidence 4556666655555678899999999999999999864 5799999999999999999987 33345799999998653 3 Q ss_pred CCCCeeEEEeccccc--------------cc------------ChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHH Q psy2408 153 DNDSFDGGWFFESIF--------------HM------------NHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKF 205 (298) Q Consensus 153 ~~~~fD~V~~~~~l~--------------~~------------~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~ 205 (298) +.++||+|+++-... +- ... .+++++.++|+|||++++.. .. T Consensus 172 ~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g~---------- 240 (275) T PRK09328 172 PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-GY---------- 240 (275) T ss_pred CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-Cc---------- Confidence 357899999852211 10 112 67888889999999998842 10 Q ss_pred HHHHHhhcccCCCCcchHHHHHHhCCCcEEEE Q psy2408 206 KEYVKKNIHSNFILVEHYPDLLNKSGFELIKI 237 (298) Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 237 (298) ...+.+..++++.||..+.. T Consensus 241 ------------~~~~~~~~~l~~~gf~~v~~ 260 (275) T PRK09328 241 ------------DQGEAVRALLAAAGFADVET 260 (275) T ss_pred ------------hHHHHHHHHHHhCCCceeEE Confidence 01235778888999975554 No 106 >PRK13256 thiopurine S-methyltransferase; Reviewed Probab=99.53 E-value=8.4e-13 Score=106.41 Aligned_cols=143 Identities=16% Similarity=0.100 Sum_probs=106.0 Q ss_pred HhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-----------cCCCCceEEEECCCCCC Q psy2408 82 NKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKA-----------EGLLDKVNFLHGDALNL 150 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~-----------~~~~~~i~~~~~d~~~~ 150 (298) ..+.+.++.+||+.|||.|..+..|+. .|.+|+|+|+|+..++.+.+.... ..-..+++++++|+.++ T Consensus 37 ~~l~~~~~~rvLvPgCGkg~D~~~LA~-~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l 115 (226) T PRK13256 37 SKLNINDSSVCLIPMCGCSIDMLFFLS-KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNL 115 (226) T ss_pred HhcCCCCCCeEEEeCCCChHHHHHHHh-CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCC Confidence 334445678999999999999999999 689999999999999988653110 00123689999999998 Q ss_pred CCC---CCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHH Q psy2408 151 PFD---NDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYP 224 (298) Q Consensus 151 ~~~---~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (298) +.+ .+.||+|+-..++++++.. +..+.+.++|+|||.+++..+....... ..+...+.+++. T Consensus 116 ~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~------------GPPf~v~~~e~~ 183 (226) T PRK13256 116 PKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQ------------TPPYSVTQAELI 183 (226) T ss_pred CccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCC------------CCCCcCCHHHHH Confidence 532 2689999999999999877 9999999999999998887664322111 122335667888 Q ss_pred HHHHhCCCcEEEEE Q psy2408 225 DLLNKSGFELIKID 238 (298) Q Consensus 225 ~~l~~~Gf~~~~~~ 238 (298) +++.. +|.+..+. T Consensus 184 ~lf~~-~~~i~~l~ 196 (226) T PRK13256 184 KNFSA-KIKFELID 196 (226) T ss_pred HhccC-CceEEEee Confidence 77753 45555444 No 107 >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown. Probab=99.53 E-value=4.5e-13 Score=105.08 Aligned_cols=167 Identities=19% Similarity=0.174 Sum_probs=122.0 Q ss_pred HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC- Q psy2408 76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD- 153 (298) Q Consensus 76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~- 153 (298) +.+.+.+.+. ..+.+|||||||||.-+.++++.+ ..+..-.|+++..+...+......+++.-..-+..|+...+.+ T Consensus 14 Il~vL~~~l~-~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~ 92 (204) T PF06080_consen 14 ILEVLKQYLP-DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPW 92 (204) T ss_pred HHHHHHHHhC-ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcc Confidence 3333434432 233359999999999999999985 5789999999999888888877777654445566777664222 Q ss_pred -------CCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCC-CC--ChhHHHHH-HHhhcccCCCC Q psy2408 154 -------NDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSV-SK--NDNKFKEY-VKKNIHSNFIL 219 (298) Q Consensus 154 -------~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~-~~--~~~~~~~~-~~~~~~~~~~~ 219 (298) .++||+|++..++|-++-. .+++.+.++|++||.|++-.+...+. .+ ....+... ..........+ T Consensus 93 ~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD 172 (204) T PF06080_consen 93 ELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRD 172 (204) T ss_pred ccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccC Confidence 4589999999999988877 99999999999999999976654331 11 12233322 22233456778 Q ss_pred cchHHHHHHhCCCcEEEEEeCCCC Q psy2408 220 VEHYPDLLNKSGFELIKIDDITSH 243 (298) Q Consensus 220 ~~~~~~~l~~~Gf~~~~~~~~~~~ 243 (298) .+++..+..++|+..++..+++-+ T Consensus 173 ~e~v~~lA~~~GL~l~~~~~MPAN 196 (204) T PF06080_consen 173 IEDVEALAAAHGLELEEDIDMPAN 196 (204) T ss_pred HHHHHHHHHHCCCccCcccccCCC Confidence 889999999999999888877654 No 108 >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... Probab=99.53 E-value=1e-13 Score=111.08 Aligned_cols=116 Identities=21% Similarity=0.218 Sum_probs=91.0 Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC Q psy2408 72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN 149 (298) Q Consensus 72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~ 149 (298) .+..+...+++.+.+.++.+|||||||+|..+..++...+ .+|+++|..+...+.|++++...+.. ++.++++|... T Consensus 56 s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~ 134 (209) T PF01135_consen 56 SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSE 134 (209) T ss_dssp --HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGG T ss_pred hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhh Confidence 4467788899999999999999999999999999998644 37999999999999999999988874 79999999876 Q ss_pred CCCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 150 LPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 150 ~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) --....+||.|++......++. .+.+.|++||++++-.- T Consensus 135 g~~~~apfD~I~v~~a~~~ip~-----~l~~qL~~gGrLV~pi~ 173 (209) T PF01135_consen 135 GWPEEAPFDRIIVTAAVPEIPE-----ALLEQLKPGGRLVAPIG 173 (209) T ss_dssp TTGGG-SEEEEEESSBBSS--H-----HHHHTEEEEEEEEEEES T ss_pred ccccCCCcCEEEEeeccchHHH-----HHHHhcCCCcEEEEEEc Confidence 4224578999999988875554 46778999999998544 No 109 >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional Probab=99.52 E-value=6.1e-13 Score=115.64 Aligned_cols=139 Identities=20% Similarity=0.242 Sum_probs=101.6 Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC Q psy2408 72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL 150 (298) Q Consensus 72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~ 150 (298) ..+.+++.++..+ .++.+|||+|||+|.++..++.. .+++++++|+|+.+++.|++++...+. ++.++++|+.+. T Consensus 237 eTE~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~ 312 (423) T PRK14966 237 ETEHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDT 312 (423) T ss_pred cHHHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhcc Confidence 3456666666655 35569999999999999999875 467999999999999999999987764 699999998664 Q ss_pred CCC-CCCeeEEEeccccc---------------------ccChH-----HHHHHHhhcccCCcEEEEEeCCCCCCCCChh Q psy2408 151 PFD-NDSFDGGWFFESIF---------------------HMNHS-----AALNEARRVLKSGSILTLTDLPLLSVSKNDN 203 (298) Q Consensus 151 ~~~-~~~fD~V~~~~~l~---------------------~~~~~-----~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~ 203 (298) .++ .++||+|+++-... --.+. .+++.+.+.|+|||.+++. ... T Consensus 313 ~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE-iG~-------- 383 (423) T PRK14966 313 DMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE-HGF-------- 383 (423) T ss_pred ccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE-ECc-------- Confidence 332 46899999954211 00111 5666777899999998763 221 Q ss_pred HHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEE Q psy2408 204 KFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKI 237 (298) Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 237 (298) ...+.+.+++++.||..++. T Consensus 384 --------------~Q~e~V~~ll~~~Gf~~v~v 403 (423) T PRK14966 384 --------------DQGAAVRGVLAENGFSGVET 403 (423) T ss_pred --------------cHHHHHHHHHHHCCCcEEEE Confidence 11346778888899976553 No 110 >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... Probab=99.52 E-value=2.6e-13 Score=113.88 Aligned_cols=133 Identities=24% Similarity=0.356 Sum_probs=96.8 Q ss_pred HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC Q psy2408 75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD 153 (298) Q Consensus 75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 153 (298) +++-.+++.+ ..++.+|||+|||+|.+++..++ .|+ +|+++|+++..++.|++++..+++..++.+. ...+ .. T Consensus 149 ~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~--~~ 222 (295) T PF06325_consen 149 RLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAK-LGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSED--LV 222 (295) T ss_dssp HHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHH-TTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSC--TC T ss_pred HHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecc--cc Confidence 3333444444 35788999999999999998888 665 7999999999999999999999998766553 2222 23 Q ss_pred CCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCC Q psy2408 154 NDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSG 231 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 231 (298) .++||+|+++-.. +. .++..+.++|+|||+++++..... ..+.+.+.+++ | T Consensus 223 ~~~~dlvvANI~~----~vL~~l~~~~~~~l~~~G~lIlSGIl~~----------------------~~~~v~~a~~~-g 275 (295) T PF06325_consen 223 EGKFDLVVANILA----DVLLELAPDIASLLKPGGYLILSGILEE----------------------QEDEVIEAYKQ-G 275 (295) T ss_dssp CS-EEEEEEES-H----HHHHHHHHHCHHHEEEEEEEEEEEEEGG----------------------GHHHHHHHHHT-T T ss_pred cccCCEEEECCCH----HHHHHHHHHHHHhhCCCCEEEEccccHH----------------------HHHHHHHHHHC-C Confidence 4899999975433 33 788889999999999999865511 12466777776 9 Q ss_pred CcEEEEEeC Q psy2408 232 FELIKIDDI 240 (298) Q Consensus 232 f~~~~~~~~ 240 (298) |.+++.... T Consensus 276 ~~~~~~~~~ 284 (295) T PF06325_consen 276 FELVEEREE 284 (295) T ss_dssp EEEEEEEEE T ss_pred CEEEEEEEE Confidence 998876643 No 111 >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional Probab=99.50 E-value=4.7e-13 Score=114.09 Aligned_cols=113 Identities=19% Similarity=0.255 Sum_probs=91.7 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP 151 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~ 151 (298) ..+...+++.+.++++.+|||+|||+|.++..+++..+ ..|+++|+++.+++.|++++...+. .++.++++|+...+ T Consensus 66 p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~ 144 (322) T PRK13943 66 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGV 144 (322) T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcc Confidence 44566777888888899999999999999999998654 4799999999999999999988887 46899999987764 Q ss_pred CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) ...++||+|++...+.+++ ..+.+.|+|||++++.. T Consensus 145 ~~~~~fD~Ii~~~g~~~ip-----~~~~~~LkpgG~Lvv~~ 180 (322) T PRK13943 145 PEFAPYDVIFVTVGVDEVP-----ETWFTQLKEGGRVIVPI 180 (322) T ss_pred cccCCccEEEECCchHHhH-----HHHHHhcCCCCEEEEEe Confidence 4456899999876554432 34667899999988854 No 112 >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. Probab=99.50 E-value=5.4e-13 Score=119.27 Aligned_cols=125 Identities=17% Similarity=0.179 Sum_probs=98.3 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF 152 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 152 (298) +.-...+...+.+.++.+|||+|||+|..+..+++.. +++++++|+++.+++.++++++..++..++.+..+|....+. T Consensus 224 d~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~ 303 (426) T TIGR00563 224 DASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ 303 (426) T ss_pred CHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc Confidence 4445566667778889999999999999999999865 479999999999999999999998876334456777665443 Q ss_pred --CCCCeeEEEe------cccccccCh----------------H-HHHHHHhhcccCCcEEEEEeCCCCCC Q psy2408 153 --DNDSFDGGWF------FESIFHMNH----------------S-AALNEARRVLKSGSILTLTDLPLLSV 198 (298) Q Consensus 153 --~~~~fD~V~~------~~~l~~~~~----------------~-~~l~~~~r~LkpgG~l~i~~~~~~~~ 198 (298) +.++||.|++ .+++.+.++ . .+|.++.++|||||+++.++...... T Consensus 304 ~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~ 374 (426) T TIGR00563 304 WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPE 374 (426) T ss_pred cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh Confidence 4578999985 244544443 3 79999999999999999998776543 No 113 >PRK14901 16S rRNA methyltransferase B; Provisional Probab=99.50 E-value=5.1e-13 Score=119.63 Aligned_cols=122 Identities=17% Similarity=0.166 Sum_probs=98.5 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP 151 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~ 151 (298) +.....+...+.+.++.+|||+|||+|..+..+++.. .++|+++|+++.+++.+++++...|+. ++.++++|+..++ T Consensus 238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~ 316 (434) T PRK14901 238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLL 316 (434) T ss_pred CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcc Confidence 4445555666777889999999999999999999864 358999999999999999999999885 5999999998765 Q ss_pred ----CCCCCeeEEEec------ccccccCh----------------H-HHHHHHhhcccCCcEEEEEeCCCC Q psy2408 152 ----FDNDSFDGGWFF------ESIFHMNH----------------S-AALNEARRVLKSGSILTLTDLPLL 196 (298) Q Consensus 152 ----~~~~~fD~V~~~------~~l~~~~~----------------~-~~l~~~~r~LkpgG~l~i~~~~~~ 196 (298) ...++||.|++. .++.+-++ . .+|.++.++|||||+++.++.... T Consensus 317 ~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434) T PRK14901 317 ELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434) T ss_pred cccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC Confidence 345789999963 34443332 3 789999999999999998876643 No 114 >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional Probab=99.50 E-value=1.4e-12 Score=111.08 Aligned_cols=102 Identities=24% Similarity=0.229 Sum_probs=83.1 Q ss_pred CCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccc-- Q psy2408 89 GQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFES-- 165 (298) Q Consensus 89 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~-- 165 (298) +.+|||+|||+|.++..++... +.+|+++|+|+.+++.|++++...++.+++.++++|+.+. ++.++||+|+++-. T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi 212 (307) T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYV 212 (307) T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCC Confidence 3689999999999999999864 6799999999999999999999888877899999998652 34568999998611 Q ss_pred -----------ccccC-----------h-H-HHHHHHhhcccCCcEEEEE Q psy2408 166 -----------IFHMN-----------H-S-AALNEARRVLKSGSILTLT 191 (298) Q Consensus 166 -----------l~~~~-----------~-~-~~l~~~~r~LkpgG~l~i~ 191 (298) +.|-+ + . .+++++.+.|+|||++++. T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307) T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307) T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE Confidence 11111 1 1 7789999999999999874 No 115 >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional Probab=99.49 E-value=5.1e-13 Score=107.73 Aligned_cols=103 Identities=17% Similarity=0.140 Sum_probs=80.0 Q ss_pred HHHhCC-CCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----- Q psy2408 80 MINKTS-ITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----- 151 (298) Q Consensus 80 l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 151 (298) +.+... ++++.+|||+|||+|.++..+++.. +.+|+++|+++ | ... .++.++++|+.+.+ T Consensus 42 ~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~-~~v~~i~~D~~~~~~~~~i 109 (209) T PRK11188 42 IQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI-VGVDFLQGDFRDELVLKAL 109 (209) T ss_pred HHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC-CCcEEEecCCCChHHHHHH Confidence 334444 4788899999999999999999874 36899999988 1 112 35899999998853 Q ss_pred ---CCCCCeeEEEecccccccChH------------HHHHHHhhcccCCcEEEEEeCC Q psy2408 152 ---FDNDSFDGGWFFESIFHMNHS------------AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 152 ---~~~~~fD~V~~~~~l~~~~~~------------~~l~~~~r~LkpgG~l~i~~~~ 194 (298) +.+++||+|++..+.++..++ .+|+++.++|+|||.+++..+. T Consensus 110 ~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209) T PRK11188 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209) T ss_pred HHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec Confidence 557899999997766554332 4789999999999999997654 No 116 >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. Probab=99.48 E-value=4e-13 Score=108.55 Aligned_cols=145 Identities=21% Similarity=0.298 Sum_probs=103.7 Q ss_pred HhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-cC----------CCCceEEEECCCCCC Q psy2408 82 NKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKA-EG----------LLDKVNFLHGDALNL 150 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~-~~----------~~~~i~~~~~d~~~~ 150 (298) +.+...++.+||..|||.|.....|++ .|.+|+|+|+|+..++.+.+.... .. -.++|++.++|+.++ T Consensus 31 ~~l~~~~~~rvLvPgCG~g~D~~~La~-~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218) T PF05724_consen 31 DSLALKPGGRVLVPGCGKGYDMLWLAE-QGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218) T ss_dssp HHHTTSTSEEEEETTTTTSCHHHHHHH-TTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG T ss_pred HhcCCCCCCeEEEeCCCChHHHHHHHH-CCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC Confidence 335567788999999999999999999 588999999999999998443221 00 123688999999998 Q ss_pred CCCC-CCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHH Q psy2408 151 PFDN-DSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDL 226 (298) Q Consensus 151 ~~~~-~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (298) +... ++||+|+=..+++.++.. +..+.+.++|+|||.+++.......... ...+...+.+++.++ T Consensus 110 ~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~-----------~GPPf~v~~~ev~~l 178 (218) T PF05724_consen 110 PPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM-----------EGPPFSVTEEEVREL 178 (218) T ss_dssp GGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS-----------SSSS----HHHHHHH T ss_pred ChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC-----------CCcCCCCCHHHHHHH Confidence 5332 579999999999999876 9999999999999995444433221111 013334567888888 Q ss_pred HHhCCCcEEEEEe Q psy2408 227 LNKSGFELIKIDD 239 (298) Q Consensus 227 l~~~Gf~~~~~~~ 239 (298) +. .+|++...+. T Consensus 179 ~~-~~f~i~~l~~ 190 (218) T PF05724_consen 179 FG-PGFEIEELEE 190 (218) T ss_dssp HT-TTEEEEEEEE T ss_pred hc-CCcEEEEEec Confidence 88 8899887765 No 117 >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed Probab=99.47 E-value=1.7e-12 Score=117.85 Aligned_cols=103 Identities=20% Similarity=0.180 Sum_probs=82.1 Q ss_pred CCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecc-- Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFE-- 164 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~-- 164 (298) ++.+|||+|||+|.++..++... +++++++|+|+.+++.|++++...++.+++.++++|+.+ +++.++||+|+++- T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506) T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506) T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC Confidence 34689999999999999998764 679999999999999999999988887789999999865 23456899999842 Q ss_pred ------------cccccC--------h----H-HHHHHHhhcccCCcEEEEE Q psy2408 165 ------------SIFHMN--------H----S-AALNEARRVLKSGSILTLT 191 (298) Q Consensus 165 ------------~l~~~~--------~----~-~~l~~~~r~LkpgG~l~i~ 191 (298) +..|-+ + . .+++++.++|+|||.+++. T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506) T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506) T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE Confidence 111111 1 1 5678889999999998874 No 118 >PRK10901 16S rRNA methyltransferase B; Provisional Probab=99.47 E-value=2.2e-12 Score=115.38 Aligned_cols=122 Identities=19% Similarity=0.240 Sum_probs=95.0 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC- Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP- 151 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~- 151 (298) +.....+...+.+.++.+|||+|||+|..+..+++..+ .+|+++|+|+.+++.+++++...++. +.++++|+.+++ T Consensus 230 d~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~ 307 (427) T PRK10901 230 DAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQ 307 (427) T ss_pred CHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchh Confidence 44455556667778899999999999999999998653 69999999999999999999988764 689999998753 Q ss_pred -CCCCCeeEEEeccc------ccccC---------------h-H-HHHHHHhhcccCCcEEEEEeCCCCC Q psy2408 152 -FDNDSFDGGWFFES------IFHMN---------------H-S-AALNEARRVLKSGSILTLTDLPLLS 197 (298) Q Consensus 152 -~~~~~fD~V~~~~~------l~~~~---------------~-~-~~l~~~~r~LkpgG~l~i~~~~~~~ 197 (298) ++.++||.|++... +.+-+ . . .++..+.++|+|||++++++..... T Consensus 308 ~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 377 (427) T PRK10901 308 WWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP 377 (427) T ss_pred hcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh Confidence 23578999995321 11111 1 2 6899999999999999998765443 No 119 >KOG1269|consensus Probab=99.46 E-value=2.2e-13 Score=117.26 Aligned_cols=187 Identities=24% Similarity=0.343 Sum_probs=147.7 Q ss_pred cccccCcchhhhhhhccccccCCCCchhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCC Q psy2408 6 TQKNKNKDIKDIKENKDIKENKGNKGKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTS 85 (298) Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 85 (298) ......++.+..+.+...+........+.+.++|+.. ..+|...++..+|++.+......... .........+.. . T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~e~~~~~e~~~~~y~~~-~dl~~~~w~~~~h~~~~~e~~~~~~~-~~~~~~~~~l~~--~ 107 (364) T KOG1269|consen 32 NVISVDNYLTFIKKNAEINAEETEDLPEQIAKYYNNS-TDLYERNWGQSFHFGRIPEGNSNEMF-WIRHEGIVALRE--S 107 (364) T ss_pred hhhhhhhHhhhhhhhcccccccccccchHHHHHhccc-chhhhhhhccchhccCccchhHHHHH-HHhhcchHHHhh--c Confidence 3334444445555555666666777788899999998 99999999999998876442111111 222233333333 3 Q ss_pred CCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccc Q psy2408 86 ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFES 165 (298) Q Consensus 86 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 165 (298) ..++..++|+|||.|....+++...++.++|+|.++..+..+.......++..+..++.+|+.+.|++++.||.|.+..+ T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364) T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364) T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee Confidence 46777999999999999999999667899999999999999999988888887788899999998999999999999999 Q ss_pred ccccChH-HHHHHHhhcccCCcEEEEEeCCCC Q psy2408 166 IFHMNHS-AALNEARRVLKSGSILTLTDLPLL 196 (298) Q Consensus 166 l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~ 196 (298) .+|.++. ..++++.|+++|||.++..++... T Consensus 188 ~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~ 219 (364) T KOG1269|consen 188 VCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKT 219 (364) T ss_pred cccCCcHHHHHHHHhcccCCCceEEeHHHHHh Confidence 9999999 999999999999999998766543 No 120 >PRK14904 16S rRNA methyltransferase B; Provisional Probab=99.45 E-value=1.1e-12 Score=117.83 Aligned_cols=117 Identities=15% Similarity=0.163 Sum_probs=93.2 Q ss_pred HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC Q psy2408 79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS 156 (298) Q Consensus 79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 156 (298) .....+.+.++.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.+++++...|+. ++.++++|+..++ ++++ T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~-~~~~ 318 (445) T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS-PEEQ 318 (445) T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc-cCCC Confidence 44455566788999999999999999888754 469999999999999999999998884 6999999998875 4578 Q ss_pred eeEEEec------cccc---------------ccCh-H-HHHHHHhhcccCCcEEEEEeCCCCC Q psy2408 157 FDGGWFF------ESIF---------------HMNH-S-AALNEARRVLKSGSILTLTDLPLLS 197 (298) Q Consensus 157 fD~V~~~------~~l~---------------~~~~-~-~~l~~~~r~LkpgG~l~i~~~~~~~ 197 (298) ||+|++. .++. ++.. . .+|.++.++|+|||+++.++..... T Consensus 319 fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~ 382 (445) T PRK14904 319 PDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP 382 (445) T ss_pred CCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh Confidence 9999952 1211 1111 2 6899999999999999998777543 No 121 >smart00650 rADc Ribosomal RNA adenine dimethylases. Probab=99.45 E-value=8.5e-13 Score=103.24 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=84.6 Q ss_pred HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC Q psy2408 77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS 156 (298) Q Consensus 77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 156 (298) .+.+++.+.+.++.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++.. .++++++++|+.++++++.+ T Consensus 2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~~~ 77 (169) T smart00650 2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPKLQ 77 (169) T ss_pred HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccccC Confidence 356777888888899999999999999999985 78999999999999999988754 24799999999998877667 Q ss_pred eeEEEecccccccChHHHHHHHhh--cccCCcEEEEE Q psy2408 157 FDGGWFFESIFHMNHSAALNEARR--VLKSGSILTLT 191 (298) Q Consensus 157 fD~V~~~~~l~~~~~~~~l~~~~r--~LkpgG~l~i~ 191 (298) ||.|+++-.. ++.. ..+..+.. .+.++|.+++. T Consensus 78 ~d~vi~n~Py-~~~~-~~i~~~l~~~~~~~~~~l~~q 112 (169) T smart00650 78 PYKVVGNLPY-NIST-PILFKLLEEPPAFRDAVLMVQ 112 (169) T ss_pred CCEEEECCCc-ccHH-HHHHHHHhcCCCcceEEEEEE Confidence 9999886544 3333 23333332 24477887775 No 122 >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] Probab=99.45 E-value=2.3e-12 Score=106.51 Aligned_cols=117 Identities=25% Similarity=0.367 Sum_probs=97.1 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF 152 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 152 (298) +.-.+.+++.+....+.+|||+|||.|.++..+++.. ..+++.+|+|...++.+++++..+++.. ..+...|..+ +. T Consensus 144 D~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~-~~v~~s~~~~-~v 221 (300) T COG2813 144 DKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN-TEVWASNLYE-PV 221 (300) T ss_pred ChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc-cEEEEecccc-cc Confidence 4456777888887777799999999999999999975 5799999999999999999999888754 3667777765 33 Q ss_pred CCCCeeEEEecccccccChH------HHHHHHhhcccCCcEEEEEeC Q psy2408 153 DNDSFDGGWFFESIFHMNHS------AALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 153 ~~~~fD~V~~~~~l~~~~~~------~~l~~~~r~LkpgG~l~i~~~ 193 (298) ++ +||+|+++--+|.-..- +++....+.|++||.|.|... T Consensus 222 ~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300) T COG2813 222 EG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300) T ss_pred cc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc Confidence 33 99999999888754332 899999999999999998765 No 123 >PRK14902 16S rRNA methyltransferase B; Provisional Probab=99.44 E-value=1.9e-12 Score=116.53 Aligned_cols=120 Identities=20% Similarity=0.211 Sum_probs=93.7 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP 151 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~ 151 (298) +.....+...+.+.++.+|||+|||+|..+..+++.. +++++++|+++.+++.+++++...++. ++.++++|+.+++ T Consensus 236 d~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~ 314 (444) T PRK14902 236 DESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVH 314 (444) T ss_pred ChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCccccc Confidence 3334445556667788999999999999999999864 569999999999999999999998885 4999999998763 Q ss_pred --CCCCCeeEEEeccc------ccccC---------------h-H-HHHHHHhhcccCCcEEEEEeCCC Q psy2408 152 --FDNDSFDGGWFFES------IFHMN---------------H-S-AALNEARRVLKSGSILTLTDLPL 195 (298) Q Consensus 152 --~~~~~fD~V~~~~~------l~~~~---------------~-~-~~l~~~~r~LkpgG~l~i~~~~~ 195 (298) ++ ++||+|++... +.+-+ . . .++.++.++|+|||+++.++... T Consensus 315 ~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444) T PRK14902 315 EKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444) T ss_pred chhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC Confidence 33 68999997421 11111 1 1 57999999999999999876553 No 124 >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase. Probab=99.44 E-value=1.1e-12 Score=109.86 Aligned_cols=114 Identities=16% Similarity=0.115 Sum_probs=90.8 Q ss_pred HhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeE Q psy2408 82 NKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDG 159 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 159 (298) ..+.+.++.+|||+|||+|..+..+++.. ...|+++|+++.+++.++++++..++. ++.+++.|...++...++||+ T Consensus 65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD~ 143 (264) T TIGR00446 65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKFDA 143 (264) T ss_pred HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCCCE Confidence 44566789999999999999999998864 358999999999999999999998874 689999998876544567999 Q ss_pred EEecc------ccccc---------------ChH--HHHHHHhhcccCCcEEEEEeCCCC Q psy2408 160 GWFFE------SIFHM---------------NHS--AALNEARRVLKSGSILTLTDLPLL 196 (298) Q Consensus 160 V~~~~------~l~~~---------------~~~--~~l~~~~r~LkpgG~l~i~~~~~~ 196 (298) |++.- ++..- ... .+|+++.++|||||+|+.++.... T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264) T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264) T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC Confidence 98621 12111 112 699999999999999998876543 No 125 >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. Probab=99.44 E-value=1.8e-12 Score=101.11 Aligned_cols=127 Identities=26% Similarity=0.394 Sum_probs=81.6 Q ss_pred HHHHHhCCC-CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC Q psy2408 78 RIMINKTSI-TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS 156 (298) Q Consensus 78 ~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 156 (298) +.+++.+.- ++...|.|+|||.+.++..+.. +.+|..+|+-. .+-.+..+|+..+|+++++ T Consensus 61 d~iI~~l~~~~~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva----------------~n~~Vtacdia~vPL~~~s 122 (219) T PF05148_consen 61 DVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVA----------------PNPRVTACDIANVPLEDES 122 (219) T ss_dssp HHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-----------------SSTTEEES-TTS-S--TT- T ss_pred HHHHHHHHhcCCCEEEEECCCchHHHHHhccc--CceEEEeeccC----------------CCCCEEEecCccCcCCCCc Confidence 344444433 3457999999999998855432 46899999954 2345788999999999999 Q ss_pred eeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEE Q psy2408 157 FDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIK 236 (298) Q Consensus 157 fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 236 (298) +|+++++.+|.-..-+.+++|+.|+|||||.|.|.+.. .++.+.+.+.+.++..||.+.. T Consensus 123 vDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~--------------------SRf~~~~~F~~~~~~~GF~~~~ 182 (219) T PF05148_consen 123 VDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVK--------------------SRFENVKQFIKALKKLGFKLKS 182 (219) T ss_dssp EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEG--------------------GG-S-HHHHHHHHHCTTEEEEE T ss_pred eeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEec--------------------ccCcCHHHHHHHHHHCCCeEEe Confidence 99999877775444449999999999999999999865 1223456888999999999888 Q ss_pred EEeCCC Q psy2408 237 IDDITS 242 (298) Q Consensus 237 ~~~~~~ 242 (298) ...... T Consensus 183 ~d~~n~ 188 (219) T PF05148_consen 183 KDESNK 188 (219) T ss_dssp EE--ST T ss_pred cccCCC Confidence 654433 No 126 >PRK14903 16S rRNA methyltransferase B; Provisional Probab=99.43 E-value=3.1e-12 Score=114.07 Aligned_cols=121 Identities=20% Similarity=0.193 Sum_probs=95.7 Q ss_pred HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-C Q psy2408 76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-F 152 (298) Q Consensus 76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~ 152 (298) ....+...+.+.++.+|||+|||+|..+..++... +.+|+++|+|+.+++.+++++...|+. ++.+++.|+..++ + T Consensus 225 ~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~ 303 (431) T PRK14903 225 SSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEY 303 (431) T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhh Confidence 33444455677889999999999999999999864 579999999999999999999998885 5899999998765 3 Q ss_pred CCCCeeEEEec------ccccccC----------------hH-HHHHHHhhcccCCcEEEEEeCCCCC Q psy2408 153 DNDSFDGGWFF------ESIFHMN----------------HS-AALNEARRVLKSGSILTLTDLPLLS 197 (298) Q Consensus 153 ~~~~fD~V~~~------~~l~~~~----------------~~-~~l~~~~r~LkpgG~l~i~~~~~~~ 197 (298) ..++||.|++. +++..-+ .. ++|.++.+.|+|||.++.++..... T Consensus 304 ~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431) T PRK14903 304 VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431) T ss_pred hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh Confidence 45789999862 2222111 12 6799999999999999998777443 No 127 >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. Probab=99.43 E-value=1.1e-12 Score=112.29 Aligned_cols=107 Identities=22% Similarity=0.174 Sum_probs=78.9 Q ss_pred CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc---------CCCCceEEEECCCCCC----CCC- Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAE---------GLLDKVNFLHGDALNL----PFD- 153 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~---------~~~~~i~~~~~d~~~~----~~~- 153 (298) ++.+|||+|||-|..+.-+....-..++|+|+|...++.|+++.... ...-...++.+|.... .++ T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331) T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331) T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc Confidence 78899999999998887777744469999999999999999999321 1112456788887643 123 Q ss_pred -CCCeeEEEecccccccCh-H----HHHHHHhhcccCCcEEEEEeCC Q psy2408 154 -NDSFDGGWFFESIFHMNH-S----AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 154 -~~~fD~V~~~~~l~~~~~-~----~~l~~~~r~LkpgG~l~i~~~~ 194 (298) ..+||+|-|.+++|+.-. . .+|+++...|+|||+++.+.+. T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331) T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331) T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE- T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC Confidence 359999999999998633 2 7999999999999999998665 No 128 >KOG3010|consensus Probab=99.43 E-value=1.9e-12 Score=102.39 Aligned_cols=103 Identities=17% Similarity=0.118 Sum_probs=76.6 Q ss_pred eEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccC Q psy2408 91 RFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMN 170 (298) Q Consensus 91 ~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~ 170 (298) .++|+|||+|..+..++.. --+|+|+|+|+.|++.|+......-..........+..++--.++++|+|++..++|++. T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd 114 (261) T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFD 114 (261) T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhc Confidence 8999999999888888884 459999999999999888664322111112233333333322379999999999999998 Q ss_pred hHHHHHHHhhcccCCc-EEEEEeCC Q psy2408 171 HSAALNEARRVLKSGS-ILTLTDLP 194 (298) Q Consensus 171 ~~~~l~~~~r~LkpgG-~l~i~~~~ 194 (298) ...+++++.|+||+.| .+.+=.++ T Consensus 115 le~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261) T KOG3010|consen 115 LERFYKEAYRVLRKDGGLIAVWNYN 139 (261) T ss_pred hHHHHHHHHHHcCCCCCEEEEEEcc Confidence 8899999999999877 55554444 No 129 >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Probab=99.42 E-value=2.9e-12 Score=91.27 Aligned_cols=100 Identities=43% Similarity=0.606 Sum_probs=83.2 Q ss_pred eEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC-CCCCeeEEEecccccc- Q psy2408 91 RFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF-DNDSFDGGWFFESIFH- 168 (298) Q Consensus 91 ~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~V~~~~~l~~- 168 (298) +|+|+|||.|..+..++...+.+++++|+++.++..+++..... ...++.++..|+.+... ..++||+|++..++++ T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107) T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107) T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccccCCceEEEEEccceeeh Confidence 58999999999999998844679999999999999998643332 33568999999988653 4578999999999988 Q ss_pred cChH-HHHHHHhhcccCCcEEEEE Q psy2408 169 MNHS-AALNEARRVLKSGSILTLT 191 (298) Q Consensus 169 ~~~~-~~l~~~~r~LkpgG~l~i~ 191 (298) .... .+++.+.+.|+|||.+++. T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107) T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107) T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE Confidence 5555 9999999999999999875 No 130 >PRK04457 spermidine synthase; Provisional Probab=99.40 E-value=3.3e-12 Score=106.58 Aligned_cols=108 Identities=14% Similarity=0.079 Sum_probs=84.3 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-CCCCCCeeEEEecc Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-PFDNDSFDGGWFFE 164 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~V~~~~ 164 (298) +++.+|||||||+|.++..+++.. +.+++++|+++++++.|++.+...+..++++++.+|+.+. .-..++||+|++.. T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262) T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262) T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC Confidence 456799999999999999998864 6799999999999999999986554446899999998654 22236899998742 Q ss_pred cc-cccCh----HHHHHHHhhcccCCcEEEEEeCC Q psy2408 165 SI-FHMNH----SAALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 165 ~l-~~~~~----~~~l~~~~r~LkpgG~l~i~~~~ 194 (298) .- ...+. ..+++++.+.|+|||++++..+. T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262) T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262) T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC Confidence 11 11221 29999999999999999986443 No 131 >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. Probab=99.40 E-value=2.1e-11 Score=101.11 Aligned_cols=139 Identities=17% Similarity=0.123 Sum_probs=97.2 Q ss_pred HHHHHHHHHHhCCC-CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC Q psy2408 73 SDKLSRIMINKTSI-TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL 150 (298) Q Consensus 73 ~~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~ 150 (298) .+.+.+.++..+.. .++.+|||+|||+|.++..+++.. +.+++++|+|+.+++.+++++...+ ++++++|+.+. T Consensus 70 Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~ 145 (251) T TIGR03704 70 TEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDA 145 (251) T ss_pred HHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhh Confidence 34555555554432 234589999999999999998764 5699999999999999999987654 47889998653 Q ss_pred -CC-CCCCeeEEEeccccc--------------cc--------Ch----H-HHHHHHhhcccCCcEEEEEeCCCCCCCCC Q psy2408 151 -PF-DNDSFDGGWFFESIF--------------HM--------NH----S-AALNEARRVLKSGSILTLTDLPLLSVSKN 201 (298) Q Consensus 151 -~~-~~~~fD~V~~~~~l~--------------~~--------~~----~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~ 201 (298) +. ..++||+|+++--.. |- .+ . .++..+.++|+|||++++.... T Consensus 146 l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~------- 218 (251) T TIGR03704 146 LPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE------- 218 (251) T ss_pred cchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc------- Confidence 21 135799999863221 10 01 1 6777788999999999875322 Q ss_pred hhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEE Q psy2408 202 DNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKID 238 (298) Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 238 (298) . ..+++..++++.||...... T Consensus 219 -~---------------~~~~v~~~l~~~g~~~~~~~ 239 (251) T TIGR03704 219 -R---------------QAPLAVEAFARAGLIARVAS 239 (251) T ss_pred -c---------------hHHHHHHHHHHCCCCceeeE Confidence 0 12356778888888755433 No 132 >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] Probab=99.39 E-value=1.7e-11 Score=102.92 Aligned_cols=136 Identities=26% Similarity=0.281 Sum_probs=97.1 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF 152 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 152 (298) ..+++.++......+. +|||+|||+|..+..++... .++|+++|+|+..++.|++++...++ .++.++..|..+ +. T Consensus 97 e~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~-~~ 173 (280) T COG2890 97 ELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFE-PL 173 (280) T ss_pred HHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccc-cc Confidence 4555555433332233 89999999999999999975 46999999999999999999999998 567777777655 33 Q ss_pred CCCCeeEEEecccc-------------cc--------cCh---H--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHH Q psy2408 153 DNDSFDGGWFFESI-------------FH--------MNH---S--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFK 206 (298) Q Consensus 153 ~~~~fD~V~~~~~l-------------~~--------~~~---~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~ 206 (298) + ++||+|+++--. .| -.+ . .++.++.+.|+|||.+++..-. T Consensus 174 ~-~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~------------ 240 (280) T COG2890 174 R-GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL------------ 240 (280) T ss_pred C-CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC------------ Confidence 3 489999984211 01 011 1 7888899999999888774321 Q ss_pred HHHHhhcccCCCCcchHHHHHHhCC-CcEEE Q psy2408 207 EYVKKNIHSNFILVEHYPDLLNKSG-FELIK 236 (298) Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~ 236 (298) ...+.+.+++.+.| |..+. T Consensus 241 -----------~q~~~v~~~~~~~~~~~~v~ 260 (280) T COG2890 241 -----------TQGEAVKALFEDTGFFEIVE 260 (280) T ss_pred -----------CcHHHHHHHHHhcCCceEEE Confidence 12356788889999 55443 No 133 >PLN02781 Probable caffeoyl-CoA O-methyltransferase Probab=99.39 E-value=6.7e-12 Score=102.99 Aligned_cols=118 Identities=20% Similarity=0.278 Sum_probs=93.2 Q ss_pred HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC Q psy2408 73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL 150 (298) Q Consensus 73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~ 150 (298) ..++...++.. .++.+|||+|||+|..+..++... +.+++++|+++++++.|++++...++.++++++.+|+.+. T Consensus 56 ~g~~L~~l~~~---~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~ 132 (234) T PLN02781 56 EGLFLSMLVKI---MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA 132 (234) T ss_pred HHHHHHHHHHH---hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH Confidence 34444444444 456799999999999988888763 4699999999999999999999999988999999999764 Q ss_pred -C-----CCCCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCCC Q psy2408 151 -P-----FDNDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLLS 197 (298) Q Consensus 151 -~-----~~~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~ 197 (298) + .+.++||+|++... ++. .++..+.+.|+|||.+++.+..+.+ T Consensus 133 L~~l~~~~~~~~fD~VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G 183 (234) T PLN02781 133 LDQLLNNDPKPEFDFAFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDNTLWFG 183 (234) T ss_pred HHHHHhCCCCCCCCEEEECCC----HHHHHHHHHHHHHhcCCCeEEEEEcCCcCC Confidence 1 12468999987432 233 8899999999999999887765544 No 134 >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional Probab=99.37 E-value=1.3e-11 Score=116.66 Aligned_cols=130 Identities=20% Similarity=0.238 Sum_probs=98.5 Q ss_pred CCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEECCCCCC-CCCCCCeeEEEecc Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLL-DKVNFLHGDALNL-PFDNDSFDGGWFFE 164 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~-~~i~~~~~d~~~~-~~~~~~fD~V~~~~ 164 (298) ++.+|||+|||+|.++..++.. |+ +|+++|+|+.+++.+++++..+++. .+++++++|+.++ .-..++||+|++.- T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702) T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702) T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC Confidence 5789999999999999999984 55 6999999999999999999998886 5799999998764 11146899999842 Q ss_pred c-----------ccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCC Q psy2408 165 S-----------IFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGF 232 (298) Q Consensus 165 ~-----------l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 232 (298) - .....+. .++..+.++|+|||.+++..... .. ......+.++|+ T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~--~~---------------------~~~~~~~~~~g~ 673 (702) T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR--GF---------------------KMDEEGLAKLGL 673 (702) T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc--cC---------------------ChhHHHHHhCCC Confidence 1 1112233 78889999999999988864321 00 112567788999 Q ss_pred cEEEEEeCC Q psy2408 233 ELIKIDDIT 241 (298) Q Consensus 233 ~~~~~~~~~ 241 (298) .+..+...+ T Consensus 674 ~~~~i~~~~ 682 (702) T PRK11783 674 KAEEITAKT 682 (702) T ss_pred eEEEEecCC Confidence 888776543 No 135 >TIGR00438 rrmJ cell division protein FtsJ. Probab=99.36 E-value=9.6e-12 Score=99.04 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=75.9 Q ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC---- Q psy2408 78 RIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP---- 151 (298) Q Consensus 78 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~---- 151 (298) +..-....+.++.+|||+|||+|.++..++... ..+++++|+|+.+ .. .++.+++.|+.+.+ T Consensus 22 ~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~ 89 (188) T TIGR00438 22 QLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNK 89 (188) T ss_pred HHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHH Confidence 333334455789999999999999999988764 3589999999854 11 35788888987642 Q ss_pred ----CCCCCeeEEEecccc--------cccC---hH-HHHHHHhhcccCCcEEEEEe Q psy2408 152 ----FDNDSFDGGWFFESI--------FHMN---HS-AALNEARRVLKSGSILTLTD 192 (298) Q Consensus 152 ----~~~~~fD~V~~~~~l--------~~~~---~~-~~l~~~~r~LkpgG~l~i~~ 192 (298) ++.++||+|++..+. .|.. .. .++.++.++|+|||++++.. T Consensus 90 l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188) T TIGR00438 90 IRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188) T ss_pred HHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE Confidence 346789999985432 1211 12 78999999999999999864 No 136 >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. Probab=99.35 E-value=8.3e-11 Score=96.14 Aligned_cols=147 Identities=18% Similarity=0.148 Sum_probs=116.3 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHhc-C--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-C--CCCCeeEE Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKAK-G--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-F--DNDSFDGG 160 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~~-~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~--~~~~fD~V 160 (298) ..+-+||||.||.|.......... . .++...|.|+..++..++.++..|+.+.++|.++|+.+.. + -+...+++ T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311) T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311) T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE Confidence 356799999999999988877753 2 5899999999999999999999999877799999987741 1 13457999 Q ss_pred EecccccccChH----HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh-----hcccCCCCcchHHHHHHhCC Q psy2408 161 WFFESIFHMNHS----AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK-----NIHSNFILVEHYPDLLNKSG 231 (298) Q Consensus 161 ~~~~~l~~~~~~----~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~G 231 (298) +.+..++.++|. ..+..+.+++.|||+++.+..++.+... ........ ...-...+..++.++++++| T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle---~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aG 290 (311) T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLE---MIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAG 290 (311) T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchH---HHHHHHhcccCCCceEEEecCHHHHHHHHHHcC Confidence 999999999986 6789999999999999999877766543 11111111 22234567899999999999 Q ss_pred CcEEE Q psy2408 232 FELIK 236 (298) Q Consensus 232 f~~~~ 236 (298) |+-+. T Consensus 291 F~K~~ 295 (311) T PF12147_consen 291 FEKID 295 (311) T ss_pred Cchhh Confidence 98554 No 137 >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed Probab=99.35 E-value=3.1e-11 Score=108.53 Aligned_cols=145 Identities=19% Similarity=0.264 Sum_probs=106.6 Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC- Q psy2408 72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL- 150 (298) Q Consensus 72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~- 150 (298) ..+.+.+.+++.+.+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++. +++++++|+.+. T Consensus 281 ~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l 358 (443) T PRK13168 281 VNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDF 358 (443) T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhh Confidence 35677888888888778899999999999999999984 579999999999999999999888874 699999998653 Q ss_pred ---CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHH Q psy2408 151 ---PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLL 227 (298) Q Consensus 151 ---~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 227 (298) ++++++||+|++.-.-.- ....+..+.+ ++|++.+++++-+.+ + ..++. .| T Consensus 359 ~~~~~~~~~fD~Vi~dPPr~g--~~~~~~~l~~-~~~~~ivyvSCnp~t--------l--------------aRDl~-~L 412 (443) T PRK13168 359 TDQPWALGGFDKVLLDPPRAG--AAEVMQALAK-LGPKRIVYVSCNPAT--------L--------------ARDAG-VL 412 (443) T ss_pred hhhhhhcCCCCEEEECcCCcC--hHHHHHHHHh-cCCCeEEEEEeChHH--------h--------------hccHH-HH Confidence 244568999987432211 1145555555 589998888764311 0 01333 44 Q ss_pred HhCCCcEEEEEeCCCCc Q psy2408 228 NKSGFELIKIDDITSHV 244 (298) Q Consensus 228 ~~~Gf~~~~~~~~~~~~ 244 (298) .+.||++..+..+..-. T Consensus 413 ~~~gY~l~~i~~~DmFP 429 (443) T PRK13168 413 VEAGYRLKRAGMLDMFP 429 (443) T ss_pred hhCCcEEEEEEEeccCC Confidence 57899999887665443 No 138 >KOG1975|consensus Probab=99.34 E-value=4.3e-12 Score=104.34 Aligned_cols=118 Identities=20% Similarity=0.239 Sum_probs=89.2 Q ss_pred HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC-CC----ceEEEECCCCCC- Q psy2408 77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL-LD----KVNFLHGDALNL- 150 (298) Q Consensus 77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~----~i~~~~~d~~~~- 150 (298) +...+-..-.+++..++|+|||-|..++-+-+..-..++|+|+++..+++|+.+...-.- .. .+.|+.+|.... T Consensus 106 IKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~ 185 (389) T KOG1975|consen 106 IKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKER 185 (389) T ss_pred HHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhH Confidence 333333333478899999999999988887774335899999999999999999774221 11 367899987652 Q ss_pred -----CCCCCCeeEEEecccccccChH-----HHHHHHhhcccCCcEEEEEeCC Q psy2408 151 -----PFDNDSFDGGWFFESIFHMNHS-----AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 151 -----~~~~~~fD~V~~~~~l~~~~~~-----~~l~~~~r~LkpgG~l~i~~~~ 194 (298) ++++.+||+|-|.+++|+.-.. .+|+++.+.|+|||+++-+.+. T Consensus 186 l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389) T KOG1975|consen 186 LMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389) T ss_pred HHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc Confidence 4455569999999999875322 8999999999999998876554 No 139 >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. Probab=99.33 E-value=1.6e-11 Score=99.12 Aligned_cols=146 Identities=20% Similarity=0.160 Sum_probs=97.7 Q ss_pred CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccccc Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIF 167 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 167 (298) ...++||||+|.|..+..++.. -.+|++.+.|+.|....+++ | .+++ |..++.-.+.+||+|.|..++. T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k----g----~~vl--~~~~w~~~~~~fDvIscLNvLD 162 (265) T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK----G----FTVL--DIDDWQQTDFKFDVISCLNVLD 162 (265) T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC----C----CeEE--ehhhhhccCCceEEEeehhhhh Confidence 4568999999999999999884 45899999999997766544 3 3333 3333433356899999999999 Q ss_pred ccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCC-----ChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCC Q psy2408 168 HMNHS-AALNEARRVLKSGSILTLTDLPLLSVSK-----NDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDIT 241 (298) Q Consensus 168 ~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 241 (298) ...+| .+|+.+++.|+|+|+++++...+..+.- ......+...-.....--....+.+.|+.+||+++.....+ T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P 242 (265) T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLP 242 (265) T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccC Confidence 99999 9999999999999999987543222110 00000000000000000012334478899999999988766 Q ss_pred CCc Q psy2408 242 SHV 244 (298) Q Consensus 242 ~~~ 244 (298) .-+ T Consensus 243 YLc 245 (265) T PF05219_consen 243 YLC 245 (265) T ss_pred ccc Confidence 543 No 140 >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] Probab=99.33 E-value=3.1e-11 Score=101.70 Aligned_cols=118 Identities=29% Similarity=0.334 Sum_probs=98.9 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC-CCCCCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG-DALNLPF 152 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~-d~~~~~~ 152 (298) .++++.+++...+.+|..|||--||||.+++...- .|++++|+|++..|+.-|+.+++..++.+ ..+... |+..+|+ T Consensus 183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl-~G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl 260 (347) T COG1041 183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGL-MGARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPL 260 (347) T ss_pred HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhh-cCceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCCC Confidence 57788889999999999999999999999988877 79999999999999999999999988765 444554 9999999 Q ss_pred CCCCeeEEEeccc------ccc--cChH--HHHHHHhhcccCCcEEEEEeC Q psy2408 153 DNDSFDGGWFFES------IFH--MNHS--AALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 153 ~~~~fD~V~~~~~------l~~--~~~~--~~l~~~~r~LkpgG~l~i~~~ 193 (298) +++++|.|++--- ..- +... .+|..+.++|++||++++..+ T Consensus 261 ~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347) T COG1041 261 RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347) T ss_pred CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC Confidence 8888999997321 111 1233 999999999999999998644 No 141 >PRK00811 spermidine synthase; Provisional Probab=99.33 E-value=1.1e-11 Score=104.63 Aligned_cols=106 Identities=18% Similarity=0.135 Sum_probs=83.2 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC--C--CCceEEEECCCCCC-CCCCCCeeEE Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEG--L--LDKVNFLHGDALNL-PFDNDSFDGG 160 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~--~--~~~i~~~~~d~~~~-~~~~~~fD~V 160 (298) +.+.+||+||||+|..+..+++..+ .+|++||+++.+++.|++.+...+ . +++++++.+|+..+ ....++||+| T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283) T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283) T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE Confidence 3567999999999999999988644 589999999999999999886432 1 45799999998764 3245789999 Q ss_pred EecccccccCh-----HHHHHHHhhcccCCcEEEEEe Q psy2408 161 WFFESIFHMNH-----SAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 161 ~~~~~l~~~~~-----~~~l~~~~r~LkpgG~l~i~~ 192 (298) ++...-.+.+. ..+++.+.+.|+|||.+++.. T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283) T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283) T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC Confidence 98543332222 178999999999999988753 No 142 >COG4122 Predicted O-methyltransferase [General function prediction only] Probab=99.33 E-value=2.7e-11 Score=96.71 Aligned_cols=117 Identities=23% Similarity=0.359 Sum_probs=95.1 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE-CCCCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLH-GDALNL 150 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~-~d~~~~ 150 (298) -.+...++. ..++.+|||||++.|..++.++... ..+++.+|+++++.+.|++++.+.|+.+++.++. +|..+. T Consensus 48 g~~L~~L~~---~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219) T COG4122 48 GALLRLLAR---LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219) T ss_pred HHHHHHHHH---hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH Confidence 344444443 3567899999999999999999874 4799999999999999999999999998898888 476553 Q ss_pred -C-CCCCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCCC Q psy2408 151 -P-FDNDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLLS 197 (298) Q Consensus 151 -~-~~~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~ 197 (298) . ...++||+|+. .+-+.. .++..+.++|+|||.+++.+..+.+ T Consensus 125 l~~~~~~~fDliFI----DadK~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219) T COG4122 125 LSRLLDGSFDLVFI----DADKADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219) T ss_pred HHhccCCCccEEEE----eCChhhCHHHHHHHHHHhCCCcEEEEeecccCC Confidence 2 34689999985 344444 9999999999999999998877665 No 143 >KOG3045|consensus Probab=99.31 E-value=1.6e-11 Score=97.91 Aligned_cols=119 Identities=25% Similarity=0.397 Sum_probs=89.9 Q ss_pred HHHhCCCC-CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCee Q psy2408 80 MINKTSIT-KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFD 158 (298) Q Consensus 80 l~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 158 (298) +++.+... ....|.|+|||-+.++. .....|+.+|+-. .+-+++.+|+.++|+++++.| T Consensus 171 ii~~ik~r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a----------------~~~~V~~cDm~~vPl~d~svD 230 (325) T KOG3045|consen 171 IIRKIKRRPKNIVIADFGCGEAKIAS----SERHKVHSFDLVA----------------VNERVIACDMRNVPLEDESVD 230 (325) T ss_pred HHHHHHhCcCceEEEecccchhhhhh----ccccceeeeeeec----------------CCCceeeccccCCcCccCccc Confidence 34444333 34688999999987765 2346899999843 345789999999999999999 Q ss_pred EEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEE Q psy2408 159 GGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKI 237 (298) Q Consensus 159 ~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 237 (298) ++|++.+|.- .+. .++.++.|+|+|||.++|.+.. .++.+...+...|...||.+... T Consensus 231 vaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~--------------------SRf~dv~~f~r~l~~lGF~~~~~ 289 (325) T KOG3045|consen 231 VAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVK--------------------SRFSDVKGFVRALTKLGFDVKHK 289 (325) T ss_pred EEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehh--------------------hhcccHHHHHHHHHHcCCeeeeh Confidence 9998766642 233 9999999999999999998765 12334456888999999987765 Q ss_pred Ee Q psy2408 238 DD 239 (298) Q Consensus 238 ~~ 239 (298) .. T Consensus 290 d~ 291 (325) T KOG3045|consen 290 DV 291 (325) T ss_pred hh Confidence 44 No 144 >KOG2899|consensus Probab=99.30 E-value=3e-11 Score=95.60 Aligned_cols=150 Identities=24% Similarity=0.309 Sum_probs=97.3 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC------------------------------ Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEG------------------------------ 135 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~------------------------------ 135 (298) ..+..+|||||.+|.++..+++.+++ .+.|+|+++..++.|+..++... T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288) T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288) T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc Confidence 46779999999999999999998764 79999999999999998765211 Q ss_pred ----CCCceEEE-------ECCCCCCCCCCCCeeEEEeccccccc----ChH---HHHHHHhhcccCCcEEEEEeCCCCC Q psy2408 136 ----LLDKVNFL-------HGDALNLPFDNDSFDGGWFFESIFHM----NHS---AALNEARRVLKSGSILTLTDLPLLS 197 (298) Q Consensus 136 ----~~~~i~~~-------~~d~~~~~~~~~~fD~V~~~~~l~~~----~~~---~~l~~~~r~LkpgG~l~i~~~~~~~ 197 (298) +++++.|. ..|+. .+....||+|+|..+--++ .|. .+++++.++|.|||+|++.--.|.. T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWks 214 (288) T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKS 214 (288) T ss_pred ccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHH Confidence 00111111 11222 1234679999986555433 344 9999999999999999885444333 Q ss_pred CCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEe Q psy2408 198 VSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDD 239 (298) Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 239 (298) ... .....+..........+.++.+..++.+.+.-....++ T Consensus 215 Y~k-aar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~ 255 (288) T KOG2899|consen 215 YKK-AARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVED 255 (288) T ss_pred HHH-HHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeecc Confidence 211 11111122223344566788888998887443333333 No 145 >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... Probab=99.29 E-value=2.8e-11 Score=96.74 Aligned_cols=121 Identities=22% Similarity=0.369 Sum_probs=95.8 Q ss_pred HHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC Q psy2408 70 AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA 147 (298) Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~ 147 (298) .....++...++... ...+||||||++|..+..+++.. +++++.+|++++..+.|++.+...|+.++|+++.+|+ T Consensus 30 ~~~~g~lL~~l~~~~---~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda 106 (205) T PF01596_consen 30 SPETGQLLQMLVRLT---RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDA 106 (205) T ss_dssp HHHHHHHHHHHHHHH---T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-H T ss_pred CHHHHHHHHHHHHhc---CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEecc Confidence 444556666666654 45699999999999999999863 5799999999999999999999999988999999998 Q ss_pred CCC-C-----CCCCCeeEEEecccccccCh-H-HHHHHHhhcccCCcEEEEEeCCCCC Q psy2408 148 LNL-P-----FDNDSFDGGWFFESIFHMNH-S-AALNEARRVLKSGSILTLTDLPLLS 197 (298) Q Consensus 148 ~~~-~-----~~~~~fD~V~~~~~l~~~~~-~-~~l~~~~r~LkpgG~l~i~~~~~~~ 197 (298) .+. + .+.++||+|+.-.. +. . .++..+.++|+|||.+++.+..+.+ T Consensus 107 ~~~l~~l~~~~~~~~fD~VFiDa~----K~~y~~y~~~~~~ll~~ggvii~DN~l~~G 160 (205) T PF01596_consen 107 LEVLPELANDGEEGQFDFVFIDAD----KRNYLEYFEKALPLLRPGGVIIADNVLWRG 160 (205) T ss_dssp HHHHHHHHHTTTTTSEEEEEEEST----GGGHHHHHHHHHHHEEEEEEEEEETTTGGG T ss_pred HhhHHHHHhccCCCceeEEEEccc----ccchhhHHHHHhhhccCCeEEEEccccccc Confidence 763 1 11358999986542 33 3 8888999999999999998766544 No 146 >PRK03612 spermidine synthase; Provisional Probab=99.29 E-value=2.4e-11 Score=110.97 Aligned_cols=106 Identities=19% Similarity=0.129 Sum_probs=81.6 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHH--HHhc---CC-CCceEEEECCCCCC-CCCCCCee Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKT--AKAE---GL-LDKVNFLHGDALNL-PFDNDSFD 158 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~--~~~~---~~-~~~i~~~~~d~~~~-~~~~~~fD 158 (298) +++.+|||+|||+|..+..+++..+ .+++++|+++++++.+++. +... .. +++++++.+|..+. ....++|| T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521) T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521) T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC Confidence 4567999999999999999988544 6999999999999999983 3221 12 25799999998774 22347899 Q ss_pred EEEecccccccCh------HHHHHHHhhcccCCcEEEEEe Q psy2408 159 GGWFFESIFHMNH------SAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 159 ~V~~~~~l~~~~~------~~~l~~~~r~LkpgG~l~i~~ 192 (298) +|++.......+. .++++.+.+.|+|||.+++.. T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521) T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521) T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec Confidence 9998754333222 168999999999999998864 No 147 >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed Probab=99.29 E-value=4.8e-11 Score=102.58 Aligned_cols=117 Identities=20% Similarity=0.149 Sum_probs=84.1 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC- Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF- 152 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~- 152 (298) ..+.+.+.+.+...++.+|||+|||+|.++..++. .+.+|+|+|+|+.+++.|++++...++ .+++++++|+.++.. T Consensus 159 ~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~-~~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~ 236 (315) T PRK03522 159 AQLYATARDWVRELPPRSMWDLFCGVGGFGLHCAT-PGMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATA 236 (315) T ss_pred HHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHh Confidence 34444444554433568999999999999999998 568999999999999999999998888 579999999977532 Q ss_pred CCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC Q psy2408 153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 153 ~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 194 (298) ..++||+|++.-.-.-+ ...+.+...-++|++.+++++-. T Consensus 237 ~~~~~D~Vv~dPPr~G~--~~~~~~~l~~~~~~~ivyvsc~p 276 (315) T PRK03522 237 QGEVPDLVLVNPPRRGI--GKELCDYLSQMAPRFILYSSCNA 276 (315) T ss_pred cCCCCeEEEECCCCCCc--cHHHHHHHHHcCCCeEEEEECCc Confidence 23579999876321101 12222333336788777776544 No 148 >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional Probab=99.28 E-value=8.6e-11 Score=93.56 Aligned_cols=124 Identities=10% Similarity=0.087 Sum_probs=89.6 Q ss_pred HHHHHHHHHHHHHHhCCC-CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC Q psy2408 69 FAQGSDKLSRIMINKTSI-TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA 147 (298) Q Consensus 69 ~~~~~~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~ 147 (298) .+...+.+.+.++..+.. .++.+|||+|||+|.++..++.....+|+++|.++.+++.++++++..++. ++.++++|+ T Consensus 33 ~Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~ 111 (199) T PRK10909 33 LRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNA 111 (199) T ss_pred cCcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchH Confidence 344556666666665532 457899999999999998755544569999999999999999999988874 699999998 Q ss_pred CCC-CCCCCCeeEEEecccccccChH-HHHHHHhh--cccCCcEEEEEeCC Q psy2408 148 LNL-PFDNDSFDGGWFFESIFHMNHS-AALNEARR--VLKSGSILTLTDLP 194 (298) Q Consensus 148 ~~~-~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r--~LkpgG~l~i~~~~ 194 (298) .+. +...++||+|++.--... .-. .++..+.. +|+|++.+++.... T Consensus 112 ~~~l~~~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199) T PRK10909 112 LSFLAQPGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVESEV 161 (199) T ss_pred HHHHhhcCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEecC Confidence 763 222457999998766322 212 55555544 47899988886544 No 149 >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional Probab=99.28 E-value=4.2e-11 Score=105.31 Aligned_cols=108 Identities=18% Similarity=0.137 Sum_probs=83.2 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEECCCCCCC--C--CCCCeeEEE Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLL-DKVNFLHGDALNLP--F--DNDSFDGGW 161 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~i~~~~~d~~~~~--~--~~~~fD~V~ 161 (298) .++.+|||+|||+|.++..++.....+|+++|+|+.+++.+++++..+++. .+++++++|+.++- + ..++||+|+ T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396) T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396) T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE Confidence 367899999999999988766532348999999999999999999998886 47999999997741 1 246899999 Q ss_pred ecccccccC---------hH-HHHHHHhhcccCCcEEEEEeCC Q psy2408 162 FFESIFHMN---------HS-AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 162 ~~~~l~~~~---------~~-~~l~~~~r~LkpgG~l~i~~~~ 194 (298) +.-....-. +. .++..+.++|+|||.++....+ T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396) T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396) T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC Confidence 864332111 12 5566788999999999876533 No 150 >PLN02476 O-methyltransferase Probab=99.27 E-value=8.8e-11 Score=97.54 Aligned_cols=121 Identities=16% Similarity=0.208 Sum_probs=96.1 Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC Q psy2408 71 QGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL 148 (298) Q Consensus 71 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~ 148 (298) ..+.++...++.. .++.+||||||++|..+..++... +.+++++|.+++..+.|++.++..|+.++++++.+|+. T Consensus 104 ~~~g~lL~~L~~~---~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~ 180 (278) T PLN02476 104 PDQAQLLAMLVQI---LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAA 180 (278) T ss_pred HHHHHHHHHHHHh---cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH Confidence 3444555555544 356799999999999999999863 56899999999999999999999999989999999986 Q ss_pred CC-C-C----CCCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCCCC Q psy2408 149 NL-P-F----DNDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLLSV 198 (298) Q Consensus 149 ~~-~-~----~~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~ 198 (298) +. + + ..++||+|+.-.. +.. .++..+.+.|+|||.+++.+..+.+. T Consensus 181 e~L~~l~~~~~~~~FD~VFIDa~----K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~ 234 (278) T PLN02476 181 ESLKSMIQNGEGSSYDFAFVDAD----KRMYQDYFELLLQLVRVGGVIVMDNVLWHGR 234 (278) T ss_pred HHHHHHHhcccCCCCCEEEECCC----HHHHHHHHHHHHHhcCCCcEEEEecCccCCc Confidence 63 2 1 1368999986442 333 89999999999999999987766553 No 151 >PRK01581 speE spermidine synthase; Validated Probab=99.27 E-value=2.3e-10 Score=97.75 Aligned_cols=106 Identities=14% Similarity=0.059 Sum_probs=79.5 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHH--H---hcCC-CCceEEEECCCCCC-CCCCCCee Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTA--K---AEGL-LDKVNFLHGDALNL-PFDNDSFD 158 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~--~---~~~~-~~~i~~~~~d~~~~-~~~~~~fD 158 (298) ..+.+||++|||+|..+..+.+.. ..+|++||+++++++.|++.. . ...+ +++++++.+|+.++ .-..++|| T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374) T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374) T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc Confidence 345699999999999998888854 369999999999999999621 1 1122 36899999999874 33357899 Q ss_pred EEEeccccc---ccChH---HHHHHHhhcccCCcEEEEEe Q psy2408 159 GGWFFESIF---HMNHS---AALNEARRVLKSGSILTLTD 192 (298) Q Consensus 159 ~V~~~~~l~---~~~~~---~~l~~~~r~LkpgG~l~i~~ 192 (298) +|++...-. ..... .+++.+++.|+|||.+++.. T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374) T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374) T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec Confidence 999863211 11111 79999999999999988863 No 152 >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. Probab=99.26 E-value=1.1e-10 Score=92.46 Aligned_cols=121 Identities=21% Similarity=0.226 Sum_probs=73.6 Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHH----HHHHHHh----c--CCeEEEEeCCHHHHHHHHHHH---------- Q psy2408 72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLS----GIRLAKA----K--GCRVDGITISKFQQESAMKTA---------- 131 (298) Q Consensus 72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~----~~~l~~~----~--~~~v~~vD~s~~~l~~a~~~~---------- 131 (298) -...+...+++.....+..+|+.+||++|.= ++.+.+. . ..+++|.|+|+.+++.|++-. T Consensus 15 l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~ 94 (196) T PF01739_consen 15 LRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLP 94 (196) T ss_dssp HHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS- T ss_pred HHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhH Confidence 3333433344444334668999999999954 3333331 1 258999999999999998730 Q ss_pred ---------HhcC--------CCCceEEEECCCCCCCCCCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEE Q psy2408 132 ---------KAEG--------LLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLT 191 (298) Q Consensus 132 ---------~~~~--------~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~ 191 (298) ...+ +..++.|...|+.+.+.+.+.||+|+|..|+-++... .+++.+++.|+|||+|++. T Consensus 95 ~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196) T PF01739_consen 95 PAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196) T ss_dssp HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE- T ss_pred HHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe Confidence 0000 1247899999998843346899999999999999887 9999999999999999996 Q ss_pred e Q psy2408 192 D 192 (298) Q Consensus 192 ~ 192 (298) . T Consensus 175 ~ 175 (196) T PF01739_consen 175 H 175 (196) T ss_dssp T T ss_pred c Confidence 3 No 153 >PLN02366 spermidine synthase Probab=99.25 E-value=7.3e-11 Score=100.20 Aligned_cols=107 Identities=16% Similarity=0.146 Sum_probs=83.1 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC--C-CCceEEEECCCCCC--CCCCCCeeEE Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEG--L-LDKVNFLHGDALNL--PFDNDSFDGG 160 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~--~-~~~i~~~~~d~~~~--~~~~~~fD~V 160 (298) +.+.+||+||||.|..+..+++..+ .+|+.||+++.+++.|++.+...+ + +++++++.+|+... ..+.++||+| T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308) T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308) T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE Confidence 4567999999999999999998654 589999999999999999886532 2 35899999997553 2235689999 Q ss_pred EecccccccCh-----HHHHHHHhhcccCCcEEEEEeC Q psy2408 161 WFFESIFHMNH-----SAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 161 ~~~~~l~~~~~-----~~~l~~~~r~LkpgG~l~i~~~ 193 (298) ++...-.+.+. ..+++.+.+.|+|||.++.... T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308) T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308) T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC Confidence 98543322222 1789999999999999877543 No 154 >KOG2940|consensus Probab=99.25 E-value=2.3e-11 Score=95.43 Aligned_cols=170 Identities=18% Similarity=0.202 Sum_probs=118.9 Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC Q psy2408 72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP 151 (298) Q Consensus 72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~ 151 (298) ...++.+.+.+..+ ....++|||||.|.+...+..+.-.+++-+|.|..|++.++..- +.++ .+...+.|-+.++ T Consensus 58 ig~rlaDrvfD~kk--~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~i--~~~~~v~DEE~Ld 132 (325) T KOG2940|consen 58 IGDRLADRVFDCKK--SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPSI--ETSYFVGDEEFLD 132 (325) T ss_pred HHHHHHHHHHHHhh--hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCce--EEEEEecchhccc Confidence 34566666665543 33489999999999999988754458999999999999987552 2222 3567788888899 Q ss_pred CCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCC--hhHHHHHHHh----hcccCCCCcchHH Q psy2408 152 FDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKN--DNKFKEYVKK----NIHSNFILVEHYP 224 (298) Q Consensus 152 ~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~ 224 (298) +.++++|+|+++..+|++.+. ..+.+++..|||.|.++.+-+.-..-... .-.+..+... +....+....++- T Consensus 133 f~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG 212 (325) T KOG2940|consen 133 FKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIG 212 (325) T ss_pred ccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhh Confidence 999999999999999999998 99999999999999987764442221000 0001111111 1122344467788 Q ss_pred HHHHhCCCcEEEE--EeCCCCccc Q psy2408 225 DLLNKSGFELIKI--DDITSHVMP 246 (298) Q Consensus 225 ~~l~~~Gf~~~~~--~~~~~~~~~ 246 (298) .+|.++||....+ .++..++.. T Consensus 213 ~LL~rAGF~m~tvDtDEi~v~Yp~ 236 (325) T KOG2940|consen 213 NLLTRAGFSMLTVDTDEIVVGYPR 236 (325) T ss_pred hHHhhcCcccceecccceeecCch Confidence 8999999986653 445555544 No 155 >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. Probab=99.24 E-value=2e-10 Score=103.23 Aligned_cols=144 Identities=21% Similarity=0.284 Sum_probs=103.5 Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC- Q psy2408 72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL- 150 (298) Q Consensus 72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~- 150 (298) ....+...+.+.+.+.++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++...++ .+++++.+|+.+. T Consensus 276 ~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l 353 (431) T TIGR00479 276 QNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVL 353 (431) T ss_pred HHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHH Confidence 45566777777777778889999999999999999984 56899999999999999999998887 4799999998653 Q ss_pred ---CCCCCCeeEEEecccccccC-hHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHH Q psy2408 151 ---PFDNDSFDGGWFFESIFHMN-HSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDL 226 (298) Q Consensus 151 ---~~~~~~fD~V~~~~~l~~~~-~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (298) +..+++||+|++.-.= .. ...+++.+.+ ++|++.+++++-. ..+. .=... T Consensus 354 ~~~~~~~~~~D~vi~dPPr--~G~~~~~l~~l~~-l~~~~ivyvsc~p--------~tla---------------rd~~~ 407 (431) T TIGR00479 354 PKQPWAGQIPDVLLLDPPR--KGCAAEVLRTIIE-LKPERIVYVSCNP--------ATLA---------------RDLEF 407 (431) T ss_pred HHHHhcCCCCCEEEECcCC--CCCCHHHHHHHHh-cCCCEEEEEcCCH--------HHHH---------------HHHHH Confidence 2334679999864331 11 1256665554 7898877775322 1111 11234 Q ss_pred HHhCCCcEEEEEeCCCC Q psy2408 227 LNKSGFELIKIDDITSH 243 (298) Q Consensus 227 l~~~Gf~~~~~~~~~~~ 243 (298) |.+.||.+..+..+..- T Consensus 408 l~~~gy~~~~~~~~DmF 424 (431) T TIGR00479 408 LCKEGYGITWVQPVDMF 424 (431) T ss_pred HHHCCeeEEEEEEeccC Confidence 66789988877765443 No 156 >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... Probab=99.23 E-value=9.7e-11 Score=93.24 Aligned_cols=101 Identities=34% Similarity=0.401 Sum_probs=81.1 Q ss_pred eEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC---CCCCCCeeEEEecccc Q psy2408 91 RFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL---PFDNDSFDGGWFFESI 166 (298) Q Consensus 91 ~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~fD~V~~~~~l 166 (298) .+||||||.|.++..+|.. ++..++|+|++...+..+..++...++ .|+.++++|+..+ -++++++|.|+..+.= T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195) T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195) T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-- T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCCC Confidence 8999999999999999987 578999999999999999999999888 5899999999883 2456899999876554 Q ss_pred cccCh---------HHHHHHHhhcccCCcEEEEEe Q psy2408 167 FHMNH---------SAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 167 ~~~~~---------~~~l~~~~r~LkpgG~l~i~~ 192 (298) -+... +.++..+.++|+|||.|.+.+ T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195) T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195) T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe Confidence 43331 289999999999999998864 No 157 >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. Probab=99.22 E-value=1.4e-10 Score=90.82 Aligned_cols=122 Identities=21% Similarity=0.265 Sum_probs=82.1 Q ss_pred HHHHHHHHHHHh------CCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcC--CCCceEE Q psy2408 72 GSDKLSRIMINK------TSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEG--LLDKVNF 142 (298) Q Consensus 72 ~~~~~~~~l~~~------~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~--~~~~i~~ 142 (298) +..-+.+.+... ....++.+|||+|||+|..++.++.. ...+|+..|.++ .++.++.++..++ ...++.+ T Consensus 23 aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v 101 (173) T PF10294_consen 23 AALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSV 101 (173) T ss_dssp HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EE T ss_pred hHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccC Confidence 445566666663 23457889999999999999999995 367999999999 9999999988765 4567888 Q ss_pred EECCCCCCC----CCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCC Q psy2408 143 LHGDALNLP----FDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 143 ~~~d~~~~~----~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~ 194 (298) ...|-.+.. ....+||+|+++++++.-... .+++.+.++|+|+|.+++.... T Consensus 102 ~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173) T PF10294_consen 102 RPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173) T ss_dssp EE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE- T ss_pred cEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCE Confidence 887765421 234689999999999876555 9999999999999987776544 No 158 >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] Probab=99.21 E-value=1.2e-09 Score=83.83 Aligned_cols=130 Identities=19% Similarity=0.176 Sum_probs=92.7 Q ss_pred CCCCCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEec Q psy2408 85 SITKGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFF 163 (298) Q Consensus 85 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~ 163 (298) +.-.|.+|+|+|||||.+++..+. +| .+|+|+|+++++++.++++..+ +..++.|+++|+.++. ..+|.|+++ T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~-lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~---~~~dtvimN 115 (198) T COG2263 42 GDLEGKTVLDLGAGTGILAIGAAL-LGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR---GKFDTVIMN 115 (198) T ss_pred CCcCCCEEEEcCCCcCHHHHHHHh-cCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC---CccceEEEC Confidence 334678999999999999988887 55 6999999999999999999988 3467999999999974 678888876 Q ss_pred cccccc---ChHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeC Q psy2408 164 ESIFHM---NHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDI 240 (298) Q Consensus 164 ~~l~~~---~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 240 (298) --+-.. .|..++..+.++. ..+-+-. ..-+.+.+++....+|+.+...... T Consensus 116 PPFG~~~rhaDr~Fl~~Ale~s----~vVYsiH----------------------~a~~~~f~~~~~~~~G~~v~~~~~~ 169 (198) T COG2263 116 PPFGSQRRHADRPFLLKALEIS----DVVYSIH----------------------KAGSRDFVEKFAADLGGTVTHIERA 169 (198) T ss_pred CCCccccccCCHHHHHHHHHhh----heEEEee----------------------ccccHHHHHHHHHhcCCeEEEEEEE Confidence 444322 2226666666653 1111111 1114567788889999988876655 Q ss_pred CCCccc Q psy2408 241 TSHVMP 246 (298) Q Consensus 241 ~~~~~~ 246 (298) ...+.. T Consensus 170 ~~~iP~ 175 (198) T COG2263 170 RFPIPR 175 (198) T ss_pred EEecCc Confidence 554443 No 159 >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. Probab=99.21 E-value=5.1e-10 Score=88.03 Aligned_cols=117 Identities=25% Similarity=0.281 Sum_probs=87.6 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCe---------EEEEeCCHHHHHHHHHHHHhcCCCCceEEE Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCR---------VDGITISKFQQESAMKTAKAEGLLDKVNFL 143 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~---------v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~ 143 (298) ..++..|+....+.++..|||--||+|.+.+..+.. .... +.|+|+++.+++.+++++...++...+.+. T Consensus 14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~ 93 (179) T PF01170_consen 14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFI 93 (179) T ss_dssp HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEE T ss_pred HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEE Confidence 456777888888889999999999999999888775 2344 889999999999999999999998889999 Q ss_pred ECCCCCCCCCCCCeeEEEecccccc-cC------hH--HHHHHHhhcccCCcEEEE Q psy2408 144 HGDALNLPFDNDSFDGGWFFESIFH-MN------HS--AALNEARRVLKSGSILTL 190 (298) Q Consensus 144 ~~d~~~~~~~~~~fD~V~~~~~l~~-~~------~~--~~l~~~~r~LkpgG~l~i 190 (298) +.|+.++++.++++|.|+++--.-. +. .. .+++++.+++++...+++ T Consensus 94 ~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179) T PF01170_consen 94 QWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179) T ss_dssp E--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE T ss_pred ecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE Confidence 9999999877789999998644322 11 11 788999999999434333 No 160 >TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. Probab=99.20 E-value=2e-10 Score=96.53 Aligned_cols=104 Identities=14% Similarity=0.053 Sum_probs=79.6 Q ss_pred CCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC--C-CCceEEEECCCCCC-CCCCCCeeEEEe Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEG--L-LDKVNFLHGDALNL-PFDNDSFDGGWF 162 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~--~-~~~i~~~~~d~~~~-~~~~~~fD~V~~ 162 (298) .+.+||+||||+|..+..+++.. ..+++++|+++.+++.+++.+...+ + .++++++..|.... ....++||+|++ T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270) T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270) T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE Confidence 44599999999999998888754 4589999999999999999876432 1 24688888887553 222478999998 Q ss_pred cccccccC--h--H-HHHHHHhhcccCCcEEEEE Q psy2408 163 FESIFHMN--H--S-AALNEARRVLKSGSILTLT 191 (298) Q Consensus 163 ~~~l~~~~--~--~-~~l~~~~r~LkpgG~l~i~ 191 (298) .......+ . . .+++.+.+.|+|||.+++. T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270) T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270) T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc Confidence 65422222 1 2 8899999999999999886 No 161 >PHA03412 putative methyltransferase; Provisional Probab=99.19 E-value=6.8e-10 Score=89.34 Aligned_cols=93 Identities=12% Similarity=0.230 Sum_probs=71.8 Q ss_pred CCCeEEEeCCCCCHHHHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEec Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKAK----GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFF 163 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~~----~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~ 163 (298) .+.+|||+|||+|.++..+++.. ..+|+++|+++.+++.|+++.. ++.+++.|+...++ +++||+|+++ T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~-~~~FDlIIsN 121 (241) T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEF-DTLFDMAISN 121 (241) T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccc-cCCccEEEEC Confidence 35699999999999999988752 4589999999999999997742 47899999987654 4689999986 Q ss_pred cccccc----------C-h-H-HHHHHHhhcccCCcE Q psy2408 164 ESIFHM----------N-H-S-AALNEARRVLKSGSI 187 (298) Q Consensus 164 ~~l~~~----------~-~-~-~~l~~~~r~LkpgG~ 187 (298) --+.-. . . . .++..+.+++++|+. T Consensus 122 PPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241) T PHA03412 122 PPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241) T ss_pred CCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE Confidence 444311 1 1 2 688888896666664 No 162 >PLN02672 methionine S-methyltransferase Probab=99.19 E-value=5.9e-10 Score=107.78 Aligned_cols=128 Identities=23% Similarity=0.278 Sum_probs=91.9 Q ss_pred CCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCC---------------CCceEEEECCCCCCCC Q psy2408 89 GQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGL---------------LDKVNFLHGDALNLPF 152 (298) Q Consensus 89 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~---------------~~~i~~~~~d~~~~~~ 152 (298) +.+|||+|||+|.++..++... ..+|+++|+|+.+++.|+.++..+++ .++++++++|+.+... T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082) T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082) T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc Confidence 4689999999999999999874 47999999999999999999987543 2479999999876421 Q ss_pred C-CCCeeEEEeccc--------------ccc--------------c------ChH-----HHHHHHhhcccCCcEEEEEe Q psy2408 153 D-NDSFDGGWFFES--------------IFH--------------M------NHS-----AALNEARRVLKSGSILTLTD 192 (298) Q Consensus 153 ~-~~~fD~V~~~~~--------------l~~--------------~------~~~-----~~l~~~~r~LkpgG~l~i~~ 192 (298) . ..+||+|+++-. .+| + .+- .++.++.++|+|||++++ + T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l-E 277 (1082) T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF-N 277 (1082) T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE-E Confidence 1 136999998311 111 0 111 677788889999998876 3 Q ss_pred CCCCCCCCChhHHHHHHHhhcccCCCCcchHH-HHHHhCCCcEEEEEe Q psy2408 193 LPLLSVSKNDNKFKEYVKKNIHSNFILVEHYP-DLLNKSGFELIKIDD 239 (298) Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Gf~~~~~~~ 239 (298) +... ..+.+. +++++.||..+.... T Consensus 278 iG~~----------------------q~~~v~~~l~~~~gf~~~~~~~ 303 (1082) T PLN02672 278 MGGR----------------------PGQAVCERLFERRGFRITKLWQ 303 (1082) T ss_pred ECcc----------------------HHHHHHHHHHHHCCCCeeEEee Confidence 3311 112455 477777887766544 No 163 >KOG1499|consensus Probab=99.18 E-value=1.8e-10 Score=96.61 Aligned_cols=111 Identities=21% Similarity=0.283 Sum_probs=88.6 Q ss_pred HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCee Q psy2408 79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFD 158 (298) Q Consensus 79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 158 (298) .++..-.+-.+..|||+|||+|.++...|+....+|++||.|. +.+.|++.+..+++.+.++++.+.+.++.+|.+++| T Consensus 51 ~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVD 129 (346) T KOG1499|consen 51 AILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVD 129 (346) T ss_pred HHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCcccee Confidence 3444444568899999999999999999995445899999876 459999999999999889999999998866678999 Q ss_pred EEEecccccccCh--H--HHHHHHhhcccCCcEEEE Q psy2408 159 GGWFFESIFHMNH--S--AALNEARRVLKSGSILTL 190 (298) Q Consensus 159 ~V~~~~~l~~~~~--~--~~l~~~~r~LkpgG~l~i 190 (298) +|++-++-+.+-- . ..|-.=-+.|+|||.++= T Consensus 130 iIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346) T KOG1499|consen 130 IIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346) T ss_pred EEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc Confidence 9998766554432 2 555555689999998763 No 164 >PTZ00338 dimethyladenosine transferase-like protein; Provisional Probab=99.17 E-value=3.5e-10 Score=95.57 Aligned_cols=95 Identities=21% Similarity=0.231 Sum_probs=78.9 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD 153 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 153 (298) ..+.+.+++.+.+.++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++...+..++++++++|+.+.++ T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~- 99 (294) T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF- 99 (294) T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc- Confidence 467778888888889999999999999999999984 678999999999999999998876655689999999988764 Q ss_pred CCCeeEEEecccccccChH Q psy2408 154 NDSFDGGWFFESIFHMNHS 172 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~~~~ 172 (298) ..||.|+++-.. ++..+ T Consensus 100 -~~~d~VvaNlPY-~Istp 116 (294) T PTZ00338 100 -PYFDVCVANVPY-QISSP 116 (294) T ss_pred -cccCEEEecCCc-ccCcH Confidence 468988875443 34444 No 165 >KOG2904|consensus Probab=99.16 E-value=5.1e-10 Score=90.30 Aligned_cols=121 Identities=19% Similarity=0.227 Sum_probs=90.1 Q ss_pred HHHHHHHHHhCC---CCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC Q psy2408 74 DKLSRIMINKTS---ITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN 149 (298) Q Consensus 74 ~~~~~~l~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~ 149 (298) +++++.+++.+. ...+..+||+|||+|.++..++... .++++++|.|+.++..|.+++...++.+++.+++.+++. T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~ 210 (328) T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES 210 (328) T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc Confidence 555555555443 2345689999999999999998874 679999999999999999999999999999998765543 Q ss_pred -----CCCCCCCeeEEEecccccc--------------------------cChH-HHHHHHhhcccCCcEEEEEeCC Q psy2408 150 -----LPFDNDSFDGGWFFESIFH--------------------------MNHS-AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 150 -----~~~~~~~fD~V~~~~~l~~--------------------------~~~~-~~l~~~~r~LkpgG~l~i~~~~ 194 (298) .+.+.+++|+++++--.-. .... .++.-+.|.|+|||.+.+.... T Consensus 211 d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328) T KOG2904|consen 211 DASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE 287 (328) T ss_pred ccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc Confidence 1345689999998422100 0011 5667788999999998886543 No 166 >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional Probab=99.16 E-value=3.3e-10 Score=94.63 Aligned_cols=88 Identities=23% Similarity=0.238 Sum_probs=75.3 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD 153 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 153 (298) .++.+.+++.+++.++.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++.. .+++.++++|+.+++++ T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~~~~ 90 (258) T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKVDLP 90 (258) T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccCCch Confidence 567788888888888999999999999999999995 67999999999999999988754 24799999999988764 Q ss_pred CCCeeEEEeccccc Q psy2408 154 NDSFDGGWFFESIF 167 (298) Q Consensus 154 ~~~fD~V~~~~~l~ 167 (298) .||.|+++-... T Consensus 91 --~~d~Vv~NlPy~ 102 (258) T PRK14896 91 --EFNKVVSNLPYQ 102 (258) T ss_pred --hceEEEEcCCcc Confidence 489998876643 No 167 >PRK11727 23S rRNA mA1618 methyltransferase; Provisional Probab=99.15 E-value=5.9e-10 Score=94.78 Aligned_cols=149 Identities=18% Similarity=0.160 Sum_probs=97.7 Q ss_pred CCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhc-CCCCceEEEE-CCCCCCC----CCCCCeeEE Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAE-GLLDKVNFLH-GDALNLP----FDNDSFDGG 160 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~-~~~~~i~~~~-~d~~~~~----~~~~~fD~V 160 (298) ++.+|||||||+|.+...++.. .+.+++|+|+++.+++.|++++... ++.+++.+.. .|...+. .+.+.||+| T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321) T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321) T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE Confidence 4679999999999888877765 5789999999999999999999998 7888888864 3333321 245789999 Q ss_pred EecccccccChH------HHHHHH----------------hhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh-----hc Q psy2408 161 WFFESIFHMNHS------AALNEA----------------RRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK-----NI 213 (298) Q Consensus 161 ~~~~~l~~~~~~------~~l~~~----------------~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-----~~ 213 (298) +|+=-++..... .-.+++ ..++.+||.+.+....... -..+... .. T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~e-------S~~~~~~~gwftsm 266 (321) T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEE-------SKAFAKQVLWFTSL 266 (321) T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHH-------HHHHHhhCcEEEEE Confidence 998766543332 112222 2334466665444332111 1111111 11 Q ss_pred ccCCCCcchHHHHHHhCCCcEEEEEeCCCC Q psy2408 214 HSNFILVEHYPDLLNKSGFELIKIDDITSH 243 (298) Q Consensus 214 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 243 (298) ...--++..+...|++.|...+.+.++..+ T Consensus 267 v~kk~~l~~l~~~L~~~~~~~~~~~e~~qG 296 (321) T PRK11727 267 VSKKENLPPLYRALKKVGAVEVKTIEMAQG 296 (321) T ss_pred eeccCCHHHHHHHHHHcCCceEEEEEEeCC Confidence 223346788999999999977776666444 No 168 >PLN02589 caffeoyl-CoA O-methyltransferase Probab=99.15 E-value=2.9e-10 Score=93.30 Aligned_cols=120 Identities=15% Similarity=0.223 Sum_probs=95.7 Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC Q psy2408 71 QGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL 148 (298) Q Consensus 71 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~ 148 (298) ....++...++... ...+|||||+++|..+..++... +++++.+|.+++..+.|++.+...|+.++|+++.+|+. T Consensus 65 ~~~g~lL~~l~~~~---~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~ 141 (247) T PLN02589 65 ADEGQFLNMLLKLI---NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL 141 (247) T ss_pred HHHHHHHHHHHHHh---CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH Confidence 34455555555554 45699999999999999999863 57999999999999999999999999999999999987 Q ss_pred CC-C-C-----CCCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCCC Q psy2408 149 NL-P-F-----DNDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLLS 197 (298) Q Consensus 149 ~~-~-~-----~~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~ 197 (298) +. + + ..++||+|+.-.- +.. .++..+.+.|+|||.+++.+..+.+ T Consensus 142 e~L~~l~~~~~~~~~fD~iFiDad----K~~Y~~y~~~~l~ll~~GGviv~DNvl~~G 195 (247) T PLN02589 142 PVLDQMIEDGKYHGTFDFIFVDAD----KDNYINYHKRLIDLVKVGGVIGYDNTLWNG 195 (247) T ss_pred HHHHHHHhccccCCcccEEEecCC----HHHhHHHHHHHHHhcCCCeEEEEcCCCCCC Confidence 63 2 1 1268999986432 444 8888999999999999887666554 No 169 >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] Probab=99.14 E-value=7.5e-10 Score=82.78 Aligned_cols=147 Identities=19% Similarity=0.122 Sum_probs=114.6 Q ss_pred HHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CC Q psy2408 35 VATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GC 112 (298) Q Consensus 35 ~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~ 112 (298) ++.-|++. -.|+..+..+....|--.. ...-+++.|.....+..|.-|||+|.|||-++..+.++. .. T Consensus 5 ~~~~f~~e-~~F~k~wi~~PrtVGaI~P---------sSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~ 74 (194) T COG3963 5 LARKFDEE-ISFFKGWIDNPRTVGAILP---------SSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPE 74 (194) T ss_pred hhhhHHHH-HHHHHHHhcCCceeeeecC---------CcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCcc Confidence 34445544 4555555555554443322 235567888888899999999999999999999999862 46 Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CCCCCeeEEEecccccccChH---HHHHHHhhcccC Q psy2408 113 RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FDNDSFDGGWFFESIFHMNHS---AALNEARRVLKS 184 (298) Q Consensus 113 ~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~Lkp 184 (298) .+++++.|+++.....+.+. .++++++|+.++. +++..||.|+|.--+..++.. ++++.+...|.+ T Consensus 75 ~L~~iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~ 148 (194) T COG3963 75 SLTAIEYSPDFVCHLNQLYP------GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA 148 (194) T ss_pred ceEEEEeCHHHHHHHHHhCC------CccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC Confidence 89999999999999988864 3568999987763 567889999999999998876 999999999999 Q ss_pred CcEEEEEeCCCCC Q psy2408 185 GSILTLTDLPLLS 197 (298) Q Consensus 185 gG~l~i~~~~~~~ 197 (298) ||.++...+...+ T Consensus 149 gg~lvqftYgp~s 161 (194) T COG3963 149 GGPLVQFTYGPLS 161 (194) T ss_pred CCeEEEEEecCCC Confidence 9999988777443 No 170 >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed Probab=99.13 E-value=3.3e-10 Score=95.32 Aligned_cols=87 Identities=16% Similarity=0.214 Sum_probs=71.1 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD 153 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 153 (298) ..+.+.+++.+.+.++.+|||+|||+|.++..+++. +.+|+++|+++.|++.+++++.. ++++++++|+.+++++ T Consensus 28 ~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~ 102 (272) T PRK00274 28 ENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLS 102 (272) T ss_pred HHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHH Confidence 346677888888888999999999999999999996 45999999999999999887642 4799999999998764 Q ss_pred CCCeeEEEeccc Q psy2408 154 NDSFDGGWFFES 165 (298) Q Consensus 154 ~~~fD~V~~~~~ 165 (298) +-.+|.|+++-. T Consensus 103 ~~~~~~vv~NlP 114 (272) T PRK00274 103 ELQPLKVVANLP 114 (272) T ss_pred HcCcceEEEeCC Confidence 322577777643 No 171 >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] Probab=99.12 E-value=6.9e-10 Score=89.78 Aligned_cols=102 Identities=25% Similarity=0.286 Sum_probs=86.8 Q ss_pred CeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC---CCCCCCeeEEEeccc Q psy2408 90 QRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL---PFDNDSFDGGWFFES 165 (298) Q Consensus 90 ~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~fD~V~~~~~ 165 (298) -.+||||||.|.....+|+. +...++|||+....+..|...+.+.++. |+.+++.|+..+ -+++++.|.|+.++. T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227) T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227) T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC Confidence 48999999999999999987 5678999999999999999999999985 899999999775 234569999988665 Q ss_pred ccccCh---------HHHHHHHhhcccCCcEEEEEe Q psy2408 166 IFHMNH---------SAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 166 l~~~~~---------~~~l~~~~r~LkpgG~l~i~~ 192 (298) =-+-.. +.+++.+.++|+|||.|.+.+ T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227) T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227) T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe Confidence 544332 289999999999999999874 No 172 >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein. Probab=99.11 E-value=1.1e-09 Score=86.25 Aligned_cols=118 Identities=17% Similarity=0.212 Sum_probs=92.1 Q ss_pred CeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC---CCCeeEEEecccc Q psy2408 90 QRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD---NDSFDGGWFFESI 166 (298) Q Consensus 90 ~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD~V~~~~~l 166 (298) .++|||||=+......... -..|+.+|+++ ..-.+.+.|+.+.|+| .+.||+|+++.|| T Consensus 53 lrlLEVGals~~N~~s~~~--~fdvt~IDLns----------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVL 114 (219) T PF11968_consen 53 LRLLEVGALSTDNACSTSG--WFDVTRIDLNS----------------QHPGILQQDFMERPLPKNESEKFDVISLSLVL 114 (219) T ss_pred ceEEeecccCCCCcccccC--ceeeEEeecCC----------------CCCCceeeccccCCCCCCcccceeEEEEEEEE Confidence 6999999986554332211 23699999976 1245788899887764 6799999999999 Q ss_pred cccChH----HHHHHHhhcccCCcE-----EEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEE Q psy2408 167 FHMNHS----AALNEARRVLKSGSI-----LTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKI 237 (298) Q Consensus 167 ~~~~~~----~~l~~~~r~LkpgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 237 (298) .++|++ ..++.+++.|+|+|. |++..+.. .....++.+.+.|..+++..||..+.. T Consensus 115 NfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~---------------Cv~NSRy~~~~~l~~im~~LGf~~~~~ 179 (219) T PF11968_consen 115 NFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP---------------CVTNSRYMTEERLREIMESLGFTRVKY 179 (219) T ss_pred eeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch---------------HhhcccccCHHHHHHHHHhCCcEEEEE Confidence 999988 999999999999999 77764431 123567888999999999999999887 Q ss_pred EeC Q psy2408 238 DDI 240 (298) Q Consensus 238 ~~~ 240 (298) +.. T Consensus 180 ~~~ 182 (219) T PF11968_consen 180 KKS 182 (219) T ss_pred Eec Confidence 653 No 173 >COG2521 Predicted archaeal methyltransferase [General function prediction only] Probab=99.10 E-value=2.6e-10 Score=89.88 Aligned_cols=142 Identities=23% Similarity=0.268 Sum_probs=100.2 Q ss_pred HhCCCCCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEECCCCCC--CCCCCCe Q psy2408 82 NKTSITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGL-LDKVNFLHGDALNL--PFDNDSF 157 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~-~~~i~~~~~d~~~~--~~~~~~f 157 (298) +..+++.|.+|||.+.|-|..++..++ .|+ +|+.++.++..++.|.-+-=..++ ...+.++.+|+.+. .+++++| T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~-rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287) T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALE-RGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF 206 (287) T ss_pred heeccccCCEeeeeccCccHHHHHHHH-cCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcccc Confidence 455567899999999999999999988 476 999999999998887654111111 13578999998775 5789999 Q ss_pred eEEEecc---ccc-ccChHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCc Q psy2408 158 DGGWFFE---SIF-HMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFE 233 (298) Q Consensus 158 D~V~~~~---~l~-~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 233 (298) |+|+--- ++. .+-...+.++++|+|+|||+++--.-++..... ..--...+.+.|++.||. T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryr---------------G~d~~~gVa~RLr~vGF~ 271 (287) T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYR---------------GLDLPKGVAERLRRVGFE 271 (287) T ss_pred ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccc---------------cCChhHHHHHHHHhcCce Confidence 9997321 111 111228999999999999998775444322111 111234677889999999 Q ss_pred EEEEEe Q psy2408 234 LIKIDD 239 (298) Q Consensus 234 ~~~~~~ 239 (298) ++.... T Consensus 272 ~v~~~~ 277 (287) T COG2521 272 VVKKVR 277 (287) T ss_pred eeeeeh Confidence 877543 No 174 >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... Probab=99.10 E-value=1.2e-09 Score=97.38 Aligned_cols=120 Identities=20% Similarity=0.225 Sum_probs=86.3 Q ss_pred HHHHHHHHHHHHHHhCCCC----CCCeEEEeCCCCCHHHHHHHHhc-----CCeEEEEeCCHHHHHHHHHHHHhcCCCCc Q psy2408 69 FAQGSDKLSRIMINKTSIT----KGQRFIDIGCGFGLSGIRLAKAK-----GCRVDGITISKFQQESAMKTAKAEGLLDK 139 (298) Q Consensus 69 ~~~~~~~~~~~l~~~~~~~----~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~~vD~s~~~l~~a~~~~~~~~~~~~ 139 (298) +..+.+.+...+.+..... .+..|||+|||+|.++...++.. ..+|++|+-|+.+....+.++...++.++ T Consensus 163 Y~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~ 242 (448) T PF05185_consen 163 YDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDK 242 (448) T ss_dssp HHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTT T ss_pred HHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCe Confidence 3444555555566655433 25789999999999988776642 25999999999999888888788889889 Q ss_pred eEEEECCCCCCCCCCCCeeEEEecccccccCh---HHHHHHHhhcccCCcEEE Q psy2408 140 VNFLHGDALNLPFDNDSFDGGWFFESIFHMNH---SAALNEARRVLKSGSILT 189 (298) Q Consensus 140 i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~---~~~l~~~~r~LkpgG~l~ 189 (298) |+++++|+.++..| .++|+||+-..-....+ ++.|....|.|||+|.++ T Consensus 243 V~vi~~d~r~v~lp-ekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448) T PF05185_consen 243 VTVIHGDMREVELP-EKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448) T ss_dssp EEEEES-TTTSCHS-S-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE T ss_pred EEEEeCcccCCCCC-CceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe Confidence 99999999999765 59999997433322222 288889999999998765 No 175 >PRK10611 chemotaxis methyltransferase CheR; Provisional Probab=99.10 E-value=3.2e-10 Score=94.96 Aligned_cols=104 Identities=17% Similarity=0.146 Sum_probs=80.6 Q ss_pred CCeEEEeCCCCCHHHH----HHHHhc-----CCeEEEEeCCHHHHHHHHHHH------------------Hh-------- Q psy2408 89 GQRFIDIGCGFGLSGI----RLAKAK-----GCRVDGITISKFQQESAMKTA------------------KA-------- 133 (298) Q Consensus 89 ~~~vLDiGcG~G~~~~----~l~~~~-----~~~v~~vD~s~~~l~~a~~~~------------------~~-------- 133 (298) ..+|+..||++|.=.. .+.+.. ..+|+|+|+|+.+++.|++.. .. T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287) T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287) T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce Confidence 4799999999995433 333321 257999999999999998751 10 Q ss_pred ----cCCCCceEEEECCCCCCCCC-CCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEe Q psy2408 134 ----EGLLDKVNFLHGDALNLPFD-NDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTD 192 (298) Q Consensus 134 ----~~~~~~i~~~~~d~~~~~~~-~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~ 192 (298) ..+...|.|...|+.+.+++ .+.||+|+|..++.|+... .+++++++.|+|||+|++.. T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287) T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287) T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC Confidence 01235678999999875433 5789999999999999776 99999999999999988863 No 176 >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. Probab=99.09 E-value=1.6e-09 Score=95.18 Aligned_cols=116 Identities=16% Similarity=0.077 Sum_probs=84.3 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-C Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-F 152 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~ 152 (298) ..+...+.+.+...++.+|||+|||+|.++..++. .+.+|+|+|+++.+++.|+++++..++. +++++++|+.++. . T Consensus 219 ~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~-~~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~ 296 (374) T TIGR02085 219 AQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAG-PDTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATA 296 (374) T ss_pred HHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhh-cCCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHh Confidence 34444444444434567999999999999999997 5679999999999999999999988874 7999999997642 1 Q ss_pred CCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 153 ~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) ..++||+|++.-.-..+ +..++..+. .++|++.+++++- T Consensus 297 ~~~~~D~vi~DPPr~G~-~~~~l~~l~-~~~p~~ivyvsc~ 335 (374) T TIGR02085 297 QMSAPELVLVNPPRRGI-GKELCDYLS-QMAPKFILYSSCN 335 (374) T ss_pred cCCCCCEEEECCCCCCC-cHHHHHHHH-hcCCCeEEEEEeC Confidence 12469999875332111 114555554 4789988888753 No 177 >KOG2915|consensus Probab=99.08 E-value=4e-09 Score=85.13 Aligned_cols=109 Identities=19% Similarity=0.265 Sum_probs=94.0 Q ss_pred HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC- Q psy2408 77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD- 153 (298) Q Consensus 77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~- 153 (298) ...|+..+.+.||.+|||-|+|+|.++..+++.. -.+++.+|+.....+.|.+.+++.++++++++.+.|+....|. T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314) T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314) T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc Confidence 4567888899999999999999999999999974 3699999999999999999999999999999999999886443 Q ss_pred -CCCeeEEEecccccccChH-HHHHHHhhcccCCc-EEEE Q psy2408 154 -NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGS-ILTL 190 (298) Q Consensus 154 -~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG-~l~i 190 (298) +..+|.|+. -++.| .++..+..+||.+| +++- T Consensus 174 ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~r~cs 208 (314) T KOG2915|consen 174 KSLKADAVFL-----DLPAPWEAIPHAAKILKDEGGRLCS 208 (314) T ss_pred cccccceEEE-----cCCChhhhhhhhHHHhhhcCceEEe Confidence 567888754 67888 99999999999887 4443 No 178 >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] Probab=99.07 E-value=1.1e-09 Score=95.07 Aligned_cols=106 Identities=23% Similarity=0.247 Sum_probs=86.7 Q ss_pred CCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEECCCCCC----CCCCCCeeEEE Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLL-DKVNFLHGDALNL----PFDNDSFDGGW 161 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~-~~i~~~~~d~~~~----~~~~~~fD~V~ 161 (298) .|.+||++-|=||.++.+.+. .|+ +||+||+|...++.|+++++.++++ .++.++++|+.++ .-...+||+|+ T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~-gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393) T COG1092 217 AGKRVLNLFSYTGGFSVHAAL-GGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393) T ss_pred cCCeEEEecccCcHHHHHHHh-cCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE Confidence 389999999999999999998 677 9999999999999999999999985 4589999999875 12245999999 Q ss_pred ec---------ccccccChH-HHHHHHhhcccCCcEEEEEeCC Q psy2408 162 FF---------ESIFHMNHS-AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 162 ~~---------~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~ 194 (298) +- ....-..+. .++..+.++|+|||.++++... T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393) T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393) T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC Confidence 72 111122333 8999999999999999987544 No 179 >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] Probab=99.06 E-value=3.1e-09 Score=87.94 Aligned_cols=124 Identities=19% Similarity=0.190 Sum_probs=89.0 Q ss_pred CcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCH----HHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHh--- Q psy2408 67 DNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGL----SGIRLAKAK------GCRVDGITISKFQQESAMKTAKA--- 133 (298) Q Consensus 67 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~----~~~~l~~~~------~~~v~~vD~s~~~l~~a~~~~~~--- 133 (298) ..+..-...+...++..... ...+|+.+||+||. +++.+.+.. ..+++|.|+|...++.|+.-.=. T Consensus 76 ~~f~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~ 154 (268) T COG1352 76 EHFEELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRE 154 (268) T ss_pred HHHHHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhH Confidence 33433444444444443322 46799999999994 344444433 36899999999999999863111 Q ss_pred --cCC-----------------------CCceEEEECCCCCCCCCCCCeeEEEecccccccChH---HHHHHHhhcccCC Q psy2408 134 --EGL-----------------------LDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSG 185 (298) Q Consensus 134 --~~~-----------------------~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~Lkpg 185 (298) .++ ..+|.|...|+..-++..+.||+|+|..|+-++..+ .+++.++..|+|| T Consensus 155 ~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~g 234 (268) T COG1352 155 LLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPG 234 (268) T ss_pred hhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCC Confidence 121 235778888887655345789999999999999887 9999999999999 Q ss_pred cEEEEE Q psy2408 186 SILTLT 191 (298) Q Consensus 186 G~l~i~ 191 (298) |.|++. T Consensus 235 G~LflG 240 (268) T COG1352 235 GLLFLG 240 (268) T ss_pred CEEEEc Confidence 999996 No 180 >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity Probab=99.05 E-value=2.3e-10 Score=100.28 Aligned_cols=118 Identities=20% Similarity=0.302 Sum_probs=81.6 Q ss_pred HHHHHHHHHHHhCCC--C--CCCeEEEeCCCCCHHHHHHHHhcCCeEEEE---eCCHHHHHHHHHHHHhcCCCCceEEEE Q psy2408 72 GSDKLSRIMINKTSI--T--KGQRFIDIGCGFGLSGIRLAKAKGCRVDGI---TISKFQQESAMKTAKAEGLLDKVNFLH 144 (298) Q Consensus 72 ~~~~~~~~l~~~~~~--~--~~~~vLDiGcG~G~~~~~l~~~~~~~v~~v---D~s~~~l~~a~~~~~~~~~~~~i~~~~ 144 (298) ......+.|.+.+.. . .-..+||+|||+|.++.+|..+ +..+..+ |..+.+++.|.++ |++..+. . T Consensus 97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleR----Gvpa~~~--~ 169 (506) T PF03141_consen 97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALER----GVPAMIG--V 169 (506) T ss_pred CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhc----Ccchhhh--h Confidence 344445555555443 2 2247899999999999999883 4333333 3344555555544 5543222 2 Q ss_pred CCCCCCCCCCCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCC Q psy2408 145 GDALNLPFDNDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLL 196 (298) Q Consensus 145 ~d~~~~~~~~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~ 196 (298) ..-..+|++++.||+|.|+.++-..... -+|-++.|+|+|||+++++.+... T Consensus 170 ~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506) T PF03141_consen 170 LGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506) T ss_pred hccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc Confidence 2346789999999999999888766555 899999999999999999877654 No 181 >KOG3178|consensus Probab=99.04 E-value=1.8e-08 Score=84.91 Aligned_cols=147 Identities=16% Similarity=0.170 Sum_probs=108.0 Q ss_pred CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccc Q psy2408 89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFH 168 (298) Q Consensus 89 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 168 (298) -...+|+|.|.|..+..+...+ .++-++++....+..+..... .| |..+-+|+..- .|. -|+|++.++++| T Consensus 178 v~~avDvGgGiG~v~k~ll~~f-p~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~P~--~daI~mkWiLhd 248 (342) T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY-PHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-TPK--GDAIWMKWILHD 248 (342) T ss_pred CceEEEcCCcHhHHHHHHHHhC-CCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-CCC--cCeEEEEeeccc Confidence 3789999999999999999854 468899999888887777664 33 67788888664 343 469999999999 Q ss_pred cChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChh-------HHHHHHHh-hcccCCCCcchHHHHHHhCCCcEEEE Q psy2408 169 MNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDN-------KFKEYVKK-NIHSNFILVEHYPDLLNKSGFELIKI 237 (298) Q Consensus 169 ~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~l~~~Gf~~~~~ 237 (298) +.|. ++|++++..|+|||.+++.+...+....... ....+... .....-.+..++..++.++||.+..+ T Consensus 249 wtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~ 328 (342) T KOG3178|consen 249 WTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMV 328 (342) T ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEE Confidence 9998 9999999999999999999886553111010 00111000 11133457889999999999998887 Q ss_pred EeCCCCc Q psy2408 238 DDITSHV 244 (298) Q Consensus 238 ~~~~~~~ 244 (298) ...+..+ T Consensus 329 ~~~~~~~ 335 (342) T KOG3178|consen 329 ALTAYSY 335 (342) T ss_pred EeccCcc Confidence 7655543 No 182 >TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. Probab=99.02 E-value=5.4e-09 Score=82.93 Aligned_cols=119 Identities=11% Similarity=0.095 Sum_probs=82.5 Q ss_pred HHHHHHHHHHhCC-CCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC- Q psy2408 73 SDKLSRIMINKTS-ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL- 150 (298) Q Consensus 73 ~~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~- 150 (298) ..++...+...+. .-.+.+|||++||+|.++..++.+...+|+++|.++.+++.++++++..++.++++++++|+.+. T Consensus 33 ~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l 112 (189) T TIGR00095 33 TRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRAL 112 (189) T ss_pred hHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHH Confidence 3444444444442 13578999999999999999999533489999999999999999999888876799999999553 Q ss_pred C-C-CCC-CeeEEEecccccccChH-HHHHHH--hhcccCCcEEEEEe Q psy2408 151 P-F-DND-SFDGGWFFESIFHMNHS-AALNEA--RRVLKSGSILTLTD 192 (298) Q Consensus 151 ~-~-~~~-~fD~V~~~~~l~~~~~~-~~l~~~--~r~LkpgG~l~i~~ 192 (298) . + ... .||+|+..-.... ... .++..+ ..+|+++|.+++.. T Consensus 113 ~~~~~~~~~~dvv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189) T TIGR00095 113 KFLAKKPTFDNVIYLDPPFFN-GALQALLELCENNWILEDTVLIVVEE 159 (189) T ss_pred HHhhccCCCceEEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEe Confidence 1 1 122 4787776443322 222 444444 34788888776643 No 183 >TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase Probab=98.99 E-value=5.7e-09 Score=87.04 Aligned_cols=85 Identities=20% Similarity=0.288 Sum_probs=70.2 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD 153 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 153 (298) ..+.+.+++.+...++.+|||+|||+|.++..+++. +..++++|+++.+++.+++.+.. ..++.++++|+.+++++ T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~ 90 (253) T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP 90 (253) T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh Confidence 456778888888888999999999999999999985 46799999999999999987643 35799999999988764 Q ss_pred CCCee---EEEecc Q psy2408 154 NDSFD---GGWFFE 164 (298) Q Consensus 154 ~~~fD---~V~~~~ 164 (298) ++| +|+++- T Consensus 91 --~~d~~~~vvsNl 102 (253) T TIGR00755 91 --DFPKQLKVVSNL 102 (253) T ss_pred --HcCCcceEEEcC Confidence 466 666543 No 184 >TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). Probab=98.99 E-value=2.5e-09 Score=86.80 Aligned_cols=146 Identities=17% Similarity=0.121 Sum_probs=85.4 Q ss_pred HHHHHHhCCC-CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCce-EEEECCCCCC---- Q psy2408 77 SRIMINKTSI-TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKV-NFLHGDALNL---- 150 (298) Q Consensus 77 ~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i-~~~~~d~~~~---- 150 (298) ...+++..++ .++.+|||+|||+|.++..+++....+|+++|+++.|+....+. . .++ .+...|+..+ T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~--~----~~v~~~~~~ni~~~~~~~ 136 (228) T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQ--D----ERVKVLERTNIRYVTPAD 136 (228) T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhc--C----CCeeEeecCCcccCCHhH Confidence 3345555554 36789999999999999999995335899999999888762211 1 122 2333344322 Q ss_pred -CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcc----cCCCCcchHHH Q psy2408 151 -PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIH----SNFILVEHYPD 225 (298) Q Consensus 151 -~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 225 (298) +..-..+|+++++..+ .+..+.++|+| |.+++..-+...... . ........ .+......+.. T Consensus 137 ~~~d~~~~DvsfiS~~~-------~l~~i~~~l~~-~~~~~L~KPqFE~~~--~---~~~~~giv~~~~~~~~~~~~~~~ 203 (228) T TIGR00478 137 IFPDFATFDVSFISLIS-------ILPELDLLLNP-NDLTLLFKPQFEAGR--E---KKNKKGVVRDKEAIALALHKVID 203 (228) T ss_pred cCCCceeeeEEEeehHh-------HHHHHHHHhCc-CeEEEEcChHhhhcH--h---hcCcCCeecCHHHHHHHHHHHHH Confidence 1112367877766554 67889999999 776654322111000 0 00000000 01122456677 Q ss_pred HHHhCCCcEEEEEeCC Q psy2408 226 LLNKSGFELIKIDDIT 241 (298) Q Consensus 226 ~l~~~Gf~~~~~~~~~ 241 (298) .+.+.||.+......+ T Consensus 204 ~~~~~~~~~~~~~~s~ 219 (228) T TIGR00478 204 KGESPDFQEKKIIFSL 219 (228) T ss_pred HHHcCCCeEeeEEECC Confidence 7888999988766543 No 185 >KOG1500|consensus Probab=98.98 E-value=4.6e-09 Score=87.15 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=85.0 Q ss_pred HHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeE Q psy2408 80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDG 159 (298) Q Consensus 80 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 159 (298) +++...--.+..|||+|||+|.++...++....+|++|+.| +|.+.|+..++.+.+.++|.++.+.++++.+| ++.|+ T Consensus 169 il~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~Dv 246 (517) T KOG1500|consen 169 ILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDV 246 (517) T ss_pred HHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccE Confidence 34433334678999999999999999988544689999975 59999999999999999999999999998876 78999 Q ss_pred EEecccccccChH---HHHHHHhhcccCCcEEEE Q psy2408 160 GWFFESIFHMNHS---AALNEARRVLKSGSILTL 190 (298) Q Consensus 160 V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i 190 (298) +++--+-.-+-+. +..-.+++.|+|.|..+- T Consensus 247 iISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517) T KOG1500|consen 247 IISEPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517) T ss_pred EEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC Confidence 9874333333232 444456799999998653 No 186 >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... Probab=98.98 E-value=4.8e-10 Score=91.97 Aligned_cols=144 Identities=20% Similarity=0.161 Sum_probs=91.6 Q ss_pred CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC----------------C-----------Cce Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL----------------L-----------DKV 140 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~----------------~-----------~~i 140 (298) .|.++||||||+-.....-+...-.+++..|.++...+..+.-+.+.+- . ..| T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256) T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256) T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh Confidence 5779999999995443222222234799999999988866665443221 0 012 Q ss_pred -EEEECCCCCC-CCCC-----CCeeEEEecccccccC-hH----HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHH Q psy2408 141 -NFLHGDALNL-PFDN-----DSFDGGWFFESIFHMN-HS----AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEY 208 (298) Q Consensus 141 -~~~~~d~~~~-~~~~-----~~fD~V~~~~~l~~~~-~~----~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 208 (298) .++..|+.+. |+.. .+||+|++..+++... +. .+++++.++|||||.|++.......... . T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~-------v 208 (256) T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYM-------V 208 (256) T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEE-------E T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEE-------E Confidence 3777898875 3322 3599999999998764 33 9999999999999999998664322111 1 Q ss_pred HHhhcccCCCCcchHHHHHHhCCCcEEEEE Q psy2408 209 VKKNIHSNFILVEHYPDLLNKSGFELIKID 238 (298) Q Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 238 (298) ..........+.+.+++.|+++||.+++.+ T Consensus 209 G~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256) T PF01234_consen 209 GGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256) T ss_dssp TTEEEE---B-HHHHHHHHHHTTEEEEEEE T ss_pred CCEecccccCCHHHHHHHHHHcCCEEEecc Confidence 111233446778899999999999998877 No 187 >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. Probab=98.98 E-value=6.1e-08 Score=80.13 Aligned_cols=144 Identities=22% Similarity=0.170 Sum_probs=101.5 Q ss_pred CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh---cC----------------------------- Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKA---EG----------------------------- 135 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~---~~----------------------------- 135 (298) ...+||--|||.|+++..+|. .|..+.|.|.|--|+-..+-.+.. .+ T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~-~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270) T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAK-LGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270) T ss_pred CccEEEEcCCCcchHHHHHhh-ccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc Confidence 457999999999999999999 588999999999987655443221 00 Q ss_pred -------CCCceEEEECCCCCCCCCC---CCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhH Q psy2408 136 -------LLDKVNFLHGDALNLPFDN---DSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNK 204 (298) Q Consensus 136 -------~~~~i~~~~~d~~~~~~~~---~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~ 204 (298) .+.+++...+|+.++..++ ++||+|+.++.+...++. ..+..+.++|||||..+=..+-.-+..+ . T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~--~- 211 (270) T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEP--M- 211 (270) T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCC--C- Confidence 1135667778887763333 799999999888887888 9999999999999955433222111111 0 Q ss_pred HHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEe Q psy2408 205 FKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDD 239 (298) Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 239 (298) .......--++.+++..++++.||+++..+. T Consensus 212 ----~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270) T PF07942_consen 212 ----SIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270) T ss_pred ----CCCCCcccCCCHHHHHHHHHHCCCEEEEEEE Confidence 0000011235789999999999999987655 No 188 >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). Probab=98.97 E-value=5.6e-09 Score=88.89 Aligned_cols=147 Identities=13% Similarity=0.059 Sum_probs=101.4 Q ss_pred HhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc----- Q psy2408 36 ATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK----- 110 (298) Q Consensus 36 ~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~----- 110 (298) +=+||..+...|+.+...+. |+....+ ....++....|...+ .++..++|+|||+|.-+..|.+.. T Consensus 33 k~~YD~~Gs~LFe~It~lpE---YYptr~E----~~iL~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~ 103 (319) T TIGR03439 33 LLLYDDEGLKLFEEITYSPE---YYLTNDE----IEILKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKK 103 (319) T ss_pred HhhhcchHHHHHHHHHcCCc---cCChHHH----HHHHHHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCC Confidence 45788776777887754432 3333111 122344555566655 467799999999999877776643 Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEECCCCCC----CC--CCCCeeEEEec-ccccccChH---HHHHHHh Q psy2408 111 GCRVDGITISKFQQESAMKTAKAEGLL-DKVNFLHGDALNL----PF--DNDSFDGGWFF-ESIFHMNHS---AALNEAR 179 (298) Q Consensus 111 ~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~i~~~~~d~~~~----~~--~~~~fD~V~~~-~~l~~~~~~---~~l~~~~ 179 (298) ..+++++|+|.++++.+.+.+.....+ -.+.-+++|+.+. +- ..+...+++.. .++.+++.. .+|++++ T Consensus 104 ~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~ 183 (319) T TIGR03439 104 SVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFL 183 (319) T ss_pred CceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHH Confidence 367999999999999999998833332 2344488888652 21 12345677655 488888876 9999999 Q ss_pred h-cccCCcEEEEE Q psy2408 180 R-VLKSGSILTLT 191 (298) Q Consensus 180 r-~LkpgG~l~i~ 191 (298) + .|+|||.++|. T Consensus 184 ~~~l~~~d~lLiG 196 (319) T TIGR03439 184 ATALSPSDSFLIG 196 (319) T ss_pred HhhCCCCCEEEEe Confidence 9 99999999885 No 189 >KOG1661|consensus Probab=98.93 E-value=8.8e-09 Score=80.07 Aligned_cols=102 Identities=21% Similarity=0.213 Sum_probs=81.4 Q ss_pred CCCCCeEEEeCCCCCHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHhcCC---------CCceEEEECCCCCCCCC Q psy2408 86 ITKGQRFIDIGCGFGLSGIRLAKAK---GCRVDGITISKFQQESAMKTAKAEGL---------LDKVNFLHGDALNLPFD 153 (298) Q Consensus 86 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~~vD~s~~~l~~a~~~~~~~~~---------~~~i~~~~~d~~~~~~~ 153 (298) +.||.+.||+|+|+|.++..++... |...+|+|.-++.++.+++++...-- ..++.++.+|......+ T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237) T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237) T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc Confidence 4799999999999999999888753 33458999999999999998765431 24678999999987556 Q ss_pred CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) ..+||.|++-.... ...+++...|+|||++++-. T Consensus 160 ~a~YDaIhvGAaa~-----~~pq~l~dqL~~gGrllip~ 193 (237) T KOG1661|consen 160 QAPYDAIHVGAAAS-----ELPQELLDQLKPGGRLLIPV 193 (237) T ss_pred cCCcceEEEccCcc-----ccHHHHHHhhccCCeEEEee Confidence 78999998763322 66778889999999999853 No 190 >PLN02823 spermine synthase Probab=98.92 E-value=1.6e-08 Score=86.89 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=80.2 Q ss_pred CCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC---CCCceEEEECCCCCC-CCCCCCeeEEEe Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEG---LLDKVNFLHGDALNL-PFDNDSFDGGWF 162 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~---~~~~i~~~~~d~~~~-~~~~~~fD~V~~ 162 (298) .+.+||.||+|.|..+..+.+.. ..++++||+++.+++.|++.+...+ -+++++++.+|+... ....++||+|++ T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336) T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336) T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe Confidence 45799999999999999888854 4589999999999999999876421 146899999998774 333578999997 Q ss_pred cccc-------cccChHHHHH-HHhhcccCCcEEEEE Q psy2408 163 FESI-------FHMNHSAALN-EARRVLKSGSILTLT 191 (298) Q Consensus 163 ~~~l-------~~~~~~~~l~-~~~r~LkpgG~l~i~ 191 (298) -..- .++-...+++ .+.+.|+|||.+++. T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336) T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336) T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe Confidence 5321 1111227888 899999999998775 No 191 >PRK04148 hypothetical protein; Provisional Probab=98.91 E-value=1.7e-08 Score=74.14 Aligned_cols=106 Identities=17% Similarity=0.170 Sum_probs=73.9 Q ss_pred HHHHHHHhCCCCCCCeEEEeCCCCCH-HHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC- Q psy2408 76 LSRIMINKTSITKGQRFIDIGCGFGL-SGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD- 153 (298) Q Consensus 76 ~~~~l~~~~~~~~~~~vLDiGcG~G~-~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~- 153 (298) +.+.+.+.+....+.+|||||||+|. .+..|++ .|..|+++|+++..++.+++. .++++..|+.+.++. T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~-~G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~ 74 (134) T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKE-SGFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEI 74 (134) T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHH-CCCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHH Confidence 45566666655567899999999996 7878886 689999999999988888765 268999999886432 Q ss_pred CCCeeEEEecccccccChHHHHHHHhhccc-CCcEEEEEeCCC Q psy2408 154 NDSFDGGWFFESIFHMNHSAALNEARRVLK-SGSILTLTDLPL 195 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~Lk-pgG~l~i~~~~~ 195 (298) -+.+|+|++...- +++..-+.++-+ -|.-++|..... T Consensus 75 y~~a~liysirpp-----~el~~~~~~la~~~~~~~~i~~l~~ 112 (134) T PRK04148 75 YKNAKLIYSIRPP-----RDLQPFILELAKKINVPLIIKPLSG 112 (134) T ss_pred HhcCCEEEEeCCC-----HHHHHHHHHHHHHcCCCEEEEcCCC Confidence 3678998875432 133333333332 345667765543 No 192 >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. Probab=98.91 E-value=2.2e-09 Score=84.52 Aligned_cols=125 Identities=17% Similarity=0.200 Sum_probs=87.2 Q ss_pred HHHHHHHHHHHHHhCCCC--CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC Q psy2408 70 AQGSDKLSRIMINKTSIT--KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA 147 (298) Q Consensus 70 ~~~~~~~~~~l~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~ 147 (298) ++..+++.+.+.+.+... ++.+|||+-||+|.++.....+...+|+.||.++..+..++++++..+..+++.++..|+ T Consensus 22 RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~ 101 (183) T PF03602_consen 22 RPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDA 101 (183) T ss_dssp -SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSH T ss_pred CCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCH Confidence 344456666666666542 788999999999999999888544599999999999999999999988877799999996 Q ss_pred CCC-C---CCCCCeeEEEecccccccCh-HHHHHHHh--hcccCCcEEEEEeCC Q psy2408 148 LNL-P---FDNDSFDGGWFFESIFHMNH-SAALNEAR--RVLKSGSILTLTDLP 194 (298) Q Consensus 148 ~~~-~---~~~~~fD~V~~~~~l~~~~~-~~~l~~~~--r~LkpgG~l~i~~~~ 194 (298) ... . ....+||+|++.--...-.. ..++..+. .+|+++|.+++-... T Consensus 102 ~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183) T PF03602_consen 102 FKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183) T ss_dssp HHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEET T ss_pred HHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecC Confidence 542 1 13689999988544332222 25666665 789999988885443 No 193 >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. Probab=98.90 E-value=6.5e-09 Score=82.56 Aligned_cols=103 Identities=22% Similarity=0.303 Sum_probs=77.2 Q ss_pred HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCe Q psy2408 79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSF 157 (298) Q Consensus 79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f 157 (298) .+.+. ..++.+|||+.||.|.++..+++. .+..|+++|++|..++.+++++..+++.+++..+++|..++.. .+.+ T Consensus 94 Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~ 170 (200) T PF02475_consen 94 RIANL--VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKF 170 (200) T ss_dssp HHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-E T ss_pred HHHhc--CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-cccc Confidence 44444 468999999999999999999984 3568999999999999999999999999899999999998753 6899 Q ss_pred eEEEecccccccChH--HHHHHHhhcccCCcEEE Q psy2408 158 DGGWFFESIFHMNHS--AALNEARRVLKSGSILT 189 (298) Q Consensus 158 D~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~ 189 (298) |.|++.. |.. .+|..+.+++++||.+. T Consensus 171 drvim~l-----p~~~~~fl~~~~~~~~~~g~ih 199 (200) T PF02475_consen 171 DRVIMNL-----PESSLEFLDAALSLLKEGGIIH 199 (200) T ss_dssp EEEEE-------TSSGGGGHHHHHHHEEEEEEEE T ss_pred CEEEECC-----hHHHHHHHHHHHHHhcCCcEEE Confidence 9887643 322 78888999999998764 No 194 >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A. Probab=98.89 E-value=4e-09 Score=86.35 Aligned_cols=190 Identities=14% Similarity=0.165 Sum_probs=103.8 Q ss_pred ccccccccCCceeEeeccC--------CCCCCcHHHHHHHHHHHHHHhCCCC-CCCeEEEeCCCC--CHHHHHHHHh--c Q psy2408 44 GQIGSVLFGGHMHWGYWDE--------SNSKDNFAQGSDKLSRIMINKTSIT-KGQRFIDIGCGF--GLSGIRLAKA--K 110 (298) Q Consensus 44 ~~~y~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~vLDiGcG~--G~~~~~l~~~--~ 110 (298) +.+|+.++|+..|+..=.. ......+....+......++.+--. .-...||||||- ......+++. + T Consensus 15 ARvYDy~LGGkdnf~vDR~~a~~~~~~~P~~~~~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P 94 (267) T PF04672_consen 15 ARVYDYLLGGKDNFAVDREAAERLLAAAPEIREAARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAP 94 (267) T ss_dssp HHHHHHHCT-SS--HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-T T ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCC Confidence 5667777777666531100 0011223333444444445554333 336899999994 4556677765 5 Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----------CCCCCeeEEEecccccccChH----HHH Q psy2408 111 GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----------FDNDSFDGGWFFESIFHMNHS----AAL 175 (298) Q Consensus 111 ~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~~~~fD~V~~~~~l~~~~~~----~~l 175 (298) .++|+.||.++-.+..++..+....- ....++.+|+.+.. +.-+..=.|++..+++|+++. .++ T Consensus 95 ~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv 173 (267) T PF04672_consen 95 DARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIV 173 (267) T ss_dssp T-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHH T ss_pred CceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHH Confidence 78999999999999999998875421 23889999998731 111233367888999999773 999 Q ss_pred HHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHH-hhcccCCCCcchHHHHHHhCCCcEEE Q psy2408 176 NEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVK-KNIHSNFILVEHYPDLLNKSGFELIK 236 (298) Q Consensus 176 ~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gf~~~~ 236 (298) +.++..|.||.+|+|+.................+. ......+.+.+++..+|. ||++++ T Consensus 174 ~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~--g~elve 233 (267) T PF04672_consen 174 ARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFD--GLELVE 233 (267) T ss_dssp HHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCT--TSEE-T T ss_pred HHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcC--CCccCC Confidence 99999999999999987764322110111222222 233345678888888887 887764 No 195 >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional Probab=98.89 E-value=1.5e-08 Score=88.87 Aligned_cols=99 Identities=25% Similarity=0.254 Sum_probs=81.1 Q ss_pred CCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI 166 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 166 (298) ++.+|||++||+|..++.++...+ .+|+++|+++.+++.++++++.+++. ++.+.+.|+..+....+.||+|++.- . T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP-~ 134 (382) T PRK04338 57 PRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDP-F 134 (382) T ss_pred CCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECC-C Confidence 346899999999999999988654 48999999999999999999988875 47789999876421146799998743 2 Q ss_pred cccChH-HHHHHHhhcccCCcEEEEE Q psy2408 167 FHMNHS-AALNEARRVLKSGSILTLT 191 (298) Q Consensus 167 ~~~~~~-~~l~~~~r~LkpgG~l~i~ 191 (298) ..+ .++..+.+.+++||.++++ T Consensus 135 ---Gs~~~~l~~al~~~~~~gilyvS 157 (382) T PRK04338 135 ---GSPAPFLDSAIRSVKRGGLLCVT 157 (382) T ss_pred ---CCcHHHHHHHHHHhcCCCEEEEE Confidence 445 8888878889999999998 No 196 >KOG0820|consensus Probab=98.88 E-value=2.2e-08 Score=81.01 Aligned_cols=90 Identities=20% Similarity=0.264 Sum_probs=78.4 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD 153 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 153 (298) ....+.|++...+++++.|||+|.|||.++..+.+ .+.+|+++++++.|+....+++..-......+++.+|+.+.++| T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe-~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P 122 (315) T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLE-AGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP 122 (315) T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHH-hcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc Confidence 45678889999999999999999999999999999 68999999999999999999988665557899999999988654 Q ss_pred CCCeeEEEecccc Q psy2408 154 NDSFDGGWFFESI 166 (298) Q Consensus 154 ~~~fD~V~~~~~l 166 (298) .||.++++--. T Consensus 123 --~fd~cVsNlPy 133 (315) T KOG0820|consen 123 --RFDGCVSNLPY 133 (315) T ss_pred --ccceeeccCCc Confidence 69999875433 No 197 >KOG1663|consensus Probab=98.88 E-value=4.3e-08 Score=77.66 Aligned_cols=115 Identities=21% Similarity=0.314 Sum_probs=94.7 Q ss_pred HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC--- Q psy2408 76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL--- 150 (298) Q Consensus 76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~--- 150 (298) +...+++.. .++++||||.=||..+..+|... +++|+++|+++...+.+.+..+.+|+..+|+++++++.+. T Consensus 64 fl~~li~~~---~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~ 140 (237) T KOG1663|consen 64 FLQMLIRLL---NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDE 140 (237) T ss_pred HHHHHHHHh---CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHH Confidence 344444443 56799999999999999998873 6899999999999999999999999999999999988663 Q ss_pred ---CCCCCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCCC Q psy2408 151 ---PFDNDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLLS 197 (298) Q Consensus 151 ---~~~~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~ 197 (298) ..+.++||++| +.+.++. ....++.+++|+||.|++....+.+ T Consensus 141 l~~~~~~~tfDfaF----vDadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237) T KOG1663|consen 141 LLADGESGTFDFAF----VDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237) T ss_pred HHhcCCCCceeEEE----EccchHHHHHHHHHHHhhcccccEEEEeccccCC Confidence 23468999997 4556665 8999999999999999998766555 No 198 >KOG1331|consensus Probab=98.87 E-value=1.7e-09 Score=88.20 Aligned_cols=109 Identities=28% Similarity=0.369 Sum_probs=88.1 Q ss_pred HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC Q psy2408 77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS 156 (298) Q Consensus 77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 156 (298) ++.+++.. +.+..++|+|||.|.... ..+.+.++|+|++...+.-+++. +......+|+.++|+++.+ T Consensus 36 v~qfl~~~--~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s 103 (293) T KOG1331|consen 36 VRQFLDSQ--PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREES 103 (293) T ss_pred HHHHHhcc--CCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCc Confidence 55666665 458899999999986532 22567899999999888777644 1126788999999999999 Q ss_pred eeEEEecccccccChH----HHHHHHhhcccCCcEEEEEeCCCCC Q psy2408 157 FDGGWFFESIFHMNHS----AALNEARRVLKSGSILTLTDLPLLS 197 (298) Q Consensus 157 fD~V~~~~~l~~~~~~----~~l~~~~r~LkpgG~l~i~~~~~~~ 197 (298) ||.+++..+++|+... .+++++.|+|+|||..++..+.... T Consensus 104 ~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q 148 (293) T KOG1331|consen 104 FDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALEQ 148 (293) T ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhc Confidence 9999999999999876 9999999999999998887665443 No 199 >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed Probab=98.86 E-value=2.9e-08 Score=89.05 Aligned_cols=112 Identities=16% Similarity=0.113 Sum_probs=88.6 Q ss_pred CCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-CCCCCeeEEE Q psy2408 85 SITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-FDNDSFDGGW 161 (298) Q Consensus 85 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~V~ 161 (298) .+.++.+|||++||.|.-+..++... ...++++|+++..+..++++++..|+. ++.+.+.|...++ ...+.||.|+ T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~~~~fD~IL 188 (470) T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAALPETFDAIL 188 (470) T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhchhhcCeEE Confidence 66799999999999999999999875 358999999999999999999999984 6888999987652 2236799999 Q ss_pred e----c--ccccccC---------------h-H-HHHHHHhhcccCCcEEEEEeCCCCC Q psy2408 162 F----F--ESIFHMN---------------H-S-AALNEARRVLKSGSILTLTDLPLLS 197 (298) Q Consensus 162 ~----~--~~l~~~~---------------~-~-~~l~~~~r~LkpgG~l~i~~~~~~~ 197 (298) + + +++..-+ . . .+|.++.++|||||+|+-++..... T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470) T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470) T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH Confidence 4 2 2222111 1 1 7899999999999999887666433 No 200 >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] Probab=98.85 E-value=2.5e-08 Score=81.73 Aligned_cols=94 Identities=19% Similarity=0.270 Sum_probs=77.9 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD 153 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 153 (298) ....+.+++...+.++.+|||||+|.|.++..|++ .+.+|+++++++.+++..++.+. ..++++++++|+.+.+++ T Consensus 16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~-~~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~ 91 (259) T COG0030 16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLE-RAARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFP 91 (259) T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHh-hcCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcch Confidence 45688899999999999999999999999999999 57789999999999999998875 235799999999998876 Q ss_pred CC-CeeEEEecccccccChH Q psy2408 154 ND-SFDGGWFFESIFHMNHS 172 (298) Q Consensus 154 ~~-~fD~V~~~~~l~~~~~~ 172 (298) .- .++.|+++--. ++..+ T Consensus 92 ~l~~~~~vVaNlPY-~Issp 110 (259) T COG0030 92 SLAQPYKVVANLPY-NISSP 110 (259) T ss_pred hhcCCCEEEEcCCC-cccHH Confidence 42 67888775443 44444 No 201 >KOG3191|consensus Probab=98.85 E-value=2.5e-07 Score=70.46 Aligned_cols=124 Identities=19% Similarity=0.258 Sum_probs=92.1 Q ss_pred CCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc Q psy2408 89 GQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI 166 (298) Q Consensus 89 ~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 166 (298) ..-+||||||+|..+..+++.. +..+.++|+++.+++..++.+..++. ++..++.|+..- +..++.|+++.+-.. T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~-l~~~~VDvLvfNPPY 120 (209) T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSG-LRNESVDVLVFNPPY 120 (209) T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhh-hccCCccEEEECCCc Confidence 5689999999999999999874 46899999999999999999887775 478899998763 334889988864221 Q ss_pred c---------------cc--Ch----H-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHH Q psy2408 167 F---------------HM--NH----S-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYP 224 (298) Q Consensus 167 ~---------------~~--~~----~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (298) - +. .+ . .++..+-.+|.|.|.+++...... .++++. T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N----------------------~p~ei~ 178 (209) T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN----------------------KPKEIL 178 (209) T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc----------------------CHHHHH Confidence 1 01 01 1 677788889999999998654311 134677 Q ss_pred HHHHhCCCcEEEE Q psy2408 225 DLLNKSGFELIKI 237 (298) Q Consensus 225 ~~l~~~Gf~~~~~ 237 (298) ..++..||.+... T Consensus 179 k~l~~~g~~~~~~ 191 (209) T KOG3191|consen 179 KILEKKGYGVRIA 191 (209) T ss_pred HHHhhcccceeEE Confidence 7788888876543 No 202 >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. Probab=98.84 E-value=9.6e-09 Score=85.93 Aligned_cols=107 Identities=24% Similarity=0.258 Sum_probs=78.6 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEECCCCCC-C--CCCCCeeEEE Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLL-DKVNFLHGDALNL-P--FDNDSFDGGW 161 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~-~~i~~~~~d~~~~-~--~~~~~fD~V~ 161 (298) ..+.+|||+-|=||.++...+. .|+ +|+.||.|..+++.+++++..++++ .++++++.|+.+. . -..++||+|+ T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286) T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286) T ss_dssp CTTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE T ss_pred cCCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE Confidence 3588999999999999998877 565 7999999999999999999999886 5789999998763 1 1246899999 Q ss_pred eccc------ccccChH-HHHHHHhhcccCCcEEEEEeCC Q psy2408 162 FFES------IFHMNHS-AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 162 ~~~~------l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~ 194 (298) +--. ..-..+. .++..+.++|+|||.|+++..+ T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286) T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286) T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-- T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC Confidence 7211 1111233 8899999999999998776543 No 203 >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation Probab=98.82 E-value=6.1e-08 Score=81.50 Aligned_cols=119 Identities=12% Similarity=-0.006 Sum_probs=79.6 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-C Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-L 150 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~ 150 (298) .++...+-..+..-.+.+|||+|||+|..+..+....+ .+++++|.|+.|++.++..+.................+ . T Consensus 19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 98 (274) T PF09243_consen 19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL 98 (274) T ss_pred HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc Confidence 44445555554444567999999999987766655432 48999999999999999987654321111111111111 1 Q ss_pred CCCCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCC Q psy2408 151 PFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLL 196 (298) Q Consensus 151 ~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~ 196 (298) ++ ...|+|++.++|..+++. .+++++.+.+.+ .|+|.|+... T Consensus 99 ~~--~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274) T PF09243_consen 99 PF--PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP 143 (274) T ss_pred cC--CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh Confidence 22 234999999999998876 888888777766 8888887743 No 204 >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. Probab=98.82 E-value=7.9e-08 Score=75.47 Aligned_cols=125 Identities=26% Similarity=0.303 Sum_probs=95.0 Q ss_pred eEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccccccc Q psy2408 91 RFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM 169 (298) Q Consensus 91 ~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~ 169 (298) +++|||+|.|.-++.++-. +..+++.+|.+..-+...+......+++ |+++++..+++ +....+||+|++..+. T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~-~~~~~~fd~v~aRAv~--- 125 (184) T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE-PEYRESFDVVTARAVA--- 125 (184) T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH-TTTTT-EEEEEEESSS--- T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc-cccCCCccEEEeehhc--- Confidence 8999999999999999876 4679999999999999999999999985 79999999988 4446899999987654 Q ss_pred ChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCC Q psy2408 170 NHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDIT 241 (298) Q Consensus 170 ~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 241 (298) +. .++.-+.+.+++||.+++.--. ....+ .++....++..|..+..+..+. T Consensus 126 -~l~~l~~~~~~~l~~~G~~l~~KG~--------~~~~E------------l~~~~~~~~~~~~~~~~v~~~~ 177 (184) T PF02527_consen 126 -PLDKLLELARPLLKPGGRLLAYKGP--------DAEEE------------LEEAKKAWKKLGLKVLSVPEFE 177 (184) T ss_dssp -SHHHHHHHHGGGEEEEEEEEEEESS----------HHH------------HHTHHHHHHCCCEEEEEEEEEE T ss_pred -CHHHHHHHHHHhcCCCCEEEEEcCC--------ChHHH------------HHHHHhHHHHhCCEEeeecccc Confidence 45 8888899999999998886322 11111 2345566777777777766553 No 205 >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed Probab=98.81 E-value=5.7e-08 Score=88.60 Aligned_cols=123 Identities=18% Similarity=0.205 Sum_probs=94.7 Q ss_pred HHHHHHHHHHHHHHhCCC-------CCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCce Q psy2408 69 FAQGSDKLSRIMINKTSI-------TKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKV 140 (298) Q Consensus 69 ~~~~~~~~~~~l~~~~~~-------~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i 140 (298) +...+.+..+.....+.+ ..+-.+||||||.|.++..+|.. +...++|+|++...+..+.......++ .|+ T Consensus 321 ~~~~q~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~ 399 (506) T PRK01544 321 LSGVQQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNF 399 (506) T ss_pred CCHHHHHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeE Confidence 445555555544444332 23568999999999999999987 468999999999999999999888887 478 Q ss_pred EEEECCCCCC--CCCCCCeeEEEecccccccCh---------HHHHHHHhhcccCCcEEEEEe Q psy2408 141 NFLHGDALNL--PFDNDSFDGGWFFESIFHMNH---------SAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 141 ~~~~~d~~~~--~~~~~~fD~V~~~~~l~~~~~---------~~~l~~~~r~LkpgG~l~i~~ 192 (298) .+++.|+..+ -++++++|.|+.++.--|.+. +.++..+.++|+|||.+.+.+ T Consensus 400 ~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506) T PRK01544 400 LLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506) T ss_pred EEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc Confidence 8888887543 366789999988766544332 289999999999999998864 No 206 >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] Probab=98.79 E-value=1.2e-07 Score=73.60 Aligned_cols=128 Identities=20% Similarity=0.225 Sum_probs=98.6 Q ss_pred CCcHHHHHHHHHHHHHHhCCC--CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEE Q psy2408 66 KDNFAQGSDKLSRIMINKTSI--TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFL 143 (298) Q Consensus 66 ~~~~~~~~~~~~~~l~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~ 143 (298) ....++..+++.+.+.+.+.. -.|.++||+-+|+|.++...+.+...+++.||.+...+..++++++..+...+..++ T Consensus 19 ~~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~ 98 (187) T COG0742 19 GPGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVL 98 (187) T ss_pred CCCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEE Confidence 345667778889999998875 478999999999999999999965569999999999999999999998877889999 Q ss_pred ECCCCCC--CCC-CCCeeEEEecccccc-cChH-HHHHH--HhhcccCCcEEEEEeC Q psy2408 144 HGDALNL--PFD-NDSFDGGWFFESIFH-MNHS-AALNE--ARRVLKSGSILTLTDL 193 (298) Q Consensus 144 ~~d~~~~--~~~-~~~fD~V~~~~~l~~-~~~~-~~l~~--~~r~LkpgG~l~i~~~ 193 (298) ..|+... ... .++||+|+.---+.. +.+. ..+.. -..+|+|+|.+++-.. T Consensus 99 ~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187) T COG0742 99 RNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187) T ss_pred eecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC Confidence 9998743 122 235999998555441 2222 22223 4578999999888543 No 207 >KOG3420|consensus Probab=98.78 E-value=2.5e-08 Score=72.87 Aligned_cols=91 Identities=22% Similarity=0.333 Sum_probs=71.0 Q ss_pred HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC Q psy2408 75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN 154 (298) Q Consensus 75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 154 (298) .+...+-+-.+--.|++++|+|||.|-++...+......|.|+|++++.++.+.+++++..+ ++.++++|+.++.+.. T Consensus 35 sM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~ 112 (185) T KOG3420|consen 35 SMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKG 112 (185) T ss_pred HHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccC Confidence 34444444445457899999999999998555542245899999999999999999987765 5799999999987777 Q ss_pred CCeeEEEeccccc Q psy2408 155 DSFDGGWFFESIF 167 (298) Q Consensus 155 ~~fD~V~~~~~l~ 167 (298) +.||.++.+--+. T Consensus 113 g~fDtaviNppFG 125 (185) T KOG3420|consen 113 GIFDTAVINPPFG 125 (185) T ss_pred CeEeeEEecCCCC Confidence 8999998865553 No 208 >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional Probab=98.78 E-value=2e-08 Score=84.40 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=72.5 Q ss_pred HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-- Q psy2408 76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-- 151 (298) Q Consensus 76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-- 151 (298) +.+.+++.+.+.++..+||++||.|..+..+++.. .++|+|+|.++.+++.+++++.. .+++.++++|+.++. T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~ 83 (296) T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEV 83 (296) T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHH Confidence 46677888888888999999999999999999975 37999999999999999988765 357999999998762 Q ss_pred CCC--CCeeEEEecccc Q psy2408 152 FDN--DSFDGGWFFESI 166 (298) Q Consensus 152 ~~~--~~fD~V~~~~~l 166 (298) .+. .++|.|++...+ T Consensus 84 l~~~~~~vDgIl~DLGv 100 (296) T PRK00050 84 LAEGLGKVDGILLDLGV 100 (296) T ss_pred HHcCCCccCEEEECCCc Confidence 222 279999875544 No 209 >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. Probab=98.78 E-value=7.4e-08 Score=84.00 Aligned_cols=114 Identities=18% Similarity=0.143 Sum_probs=80.5 Q ss_pred HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-C Q psy2408 73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-P 151 (298) Q Consensus 73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~ 151 (298) ...+...+++.+...+ .+|||++||+|.++..+++.. .+|+|+|+++.+++.+++++...++. +++++.+|+.++ + T Consensus 183 ~~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~ 259 (353) T TIGR02143 183 NIKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQ 259 (353) T ss_pred HHHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHH Confidence 4566666666665333 479999999999999998853 59999999999999999999988874 699999998764 1 Q ss_pred -------C---C-----CCCeeEEEecccccccC-hHHHHHHHhhcccCCcEEEEEeCC Q psy2408 152 -------F---D-----NDSFDGGWFFESIFHMN-HSAALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 152 -------~---~-----~~~fD~V~~~~~l~~~~-~~~~l~~~~r~LkpgG~l~i~~~~ 194 (298) + . ...||+|++.=. . .. .+.+++.+. +|++.+++++-. T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~d~v~lDPP-R-~G~~~~~l~~l~---~~~~ivYvsC~p 313 (353) T TIGR02143 260 AMNGVREFRRLKGIDLKSYNCSTIFVDPP-R-AGLDPDTCKLVQ---AYERILYISCNP 313 (353) T ss_pred HHhhccccccccccccccCCCCEEEECCC-C-CCCcHHHHHHHH---cCCcEEEEEcCH Confidence 0 0 013788876322 1 11 114444443 478888887543 No 210 >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated Probab=98.75 E-value=1.1e-07 Score=83.33 Aligned_cols=114 Identities=19% Similarity=0.211 Sum_probs=80.9 Q ss_pred HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-C Q psy2408 73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-P 151 (298) Q Consensus 73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~ 151 (298) .+.+...+.+.+... +.+|||++||+|.++..+++. ..+|+++|.|+.+++.+++++...++. +++++++|+.++ + T Consensus 192 ~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~ 268 (362) T PRK05031 192 NEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQ 268 (362) T ss_pred HHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHH Confidence 456666666665432 357999999999999988884 458999999999999999999988874 799999998763 1 Q ss_pred -CC--------------CCCeeEEEecccccccC-hHHHHHHHhhcccCCcEEEEEeCC Q psy2408 152 -FD--------------NDSFDGGWFFESIFHMN-HSAALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 152 -~~--------------~~~fD~V~~~~~l~~~~-~~~~l~~~~r~LkpgG~l~i~~~~ 194 (298) +. ..+||+|++.--- .. ...+++.+.+ |++.+++++-. T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR--~G~~~~~l~~l~~---~~~ivyvSC~p 322 (362) T PRK05031 269 AMNGVREFNRLKGIDLKSYNFSTIFVDPPR--AGLDDETLKLVQA---YERILYISCNP 322 (362) T ss_pred HHhhcccccccccccccCCCCCEEEECCCC--CCCcHHHHHHHHc---cCCEEEEEeCH Confidence 10 1258998863321 11 1144444443 67888776543 No 211 >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] Probab=98.74 E-value=1.4e-07 Score=78.97 Aligned_cols=117 Identities=17% Similarity=0.083 Sum_probs=88.2 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC--C-CCceEEEECCCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEG--L-LDKVNFLHGDALN 149 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~--~-~~~i~~~~~d~~~ 149 (298) .++...+.-.....+ .+||-||.|.|.++..+.+.. -.+++.||+++..++.|++.+.... . ++++.++..|..+ T Consensus 63 hEml~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~ 141 (282) T COG0421 63 HEMLAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVE 141 (282) T ss_pred HHHHHhchhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHH Confidence 333344333344444 699999999999999999964 3699999999999999999987433 2 3789999999887 Q ss_pred C--CCCCCCeeEEEecccccccC-----hHHHHHHHhhcccCCcEEEEEe Q psy2408 150 L--PFDNDSFDGGWFFESIFHMN-----HSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 150 ~--~~~~~~fD~V~~~~~l~~~~-----~~~~l~~~~r~LkpgG~l~i~~ 192 (298) + ..+ ++||+|++-.+=.--+ ...+++.+++.|+++|.++... T Consensus 142 ~v~~~~-~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282) T COG0421 142 FLRDCE-EKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282) T ss_pred HHHhCC-CcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec Confidence 6 233 4899998744333112 2299999999999999998873 No 212 >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] Probab=98.74 E-value=2.3e-07 Score=82.43 Aligned_cols=144 Identities=24% Similarity=0.332 Sum_probs=104.3 Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC Q psy2408 71 QGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL 150 (298) Q Consensus 71 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~ 150 (298) .....+....++.+...++.+|||+=||.|.++..++. ...+|+|+|+++++++.|+++++.+++.+ ++|..+++.++ T Consensus 276 ~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~-~~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~ 353 (432) T COG2265 276 AVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAK-RVKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEF 353 (432) T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcc-cCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHH Confidence 45678888888999888889999999999999999997 56799999999999999999999999864 99999999887 Q ss_pred CCC---CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHH Q psy2408 151 PFD---NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLL 227 (298) Q Consensus 151 ~~~---~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 227 (298) ... ...+|.|+..--=. --++.+++.+ .-++|...+++++-+ .. ...=...| T Consensus 354 ~~~~~~~~~~d~VvvDPPR~-G~~~~~lk~l-~~~~p~~IvYVSCNP--------~T---------------laRDl~~L 408 (432) T COG2265 354 TPAWWEGYKPDVVVVDPPRA-GADREVLKQL-AKLKPKRIVYVSCNP--------AT---------------LARDLAIL 408 (432) T ss_pred hhhccccCCCCEEEECCCCC-CCCHHHHHHH-HhcCCCcEEEEeCCH--------HH---------------HHHHHHHH Confidence 422 24789987511000 0001344444 345777788887644 11 11222467 Q ss_pred HhCCCcEEEEEeCC Q psy2408 228 NKSGFELIKIDDIT 241 (298) Q Consensus 228 ~~~Gf~~~~~~~~~ 241 (298) .+.|+.+..+..+. T Consensus 409 ~~~gy~i~~v~~~D 422 (432) T COG2265 409 ASTGYEIERVQPFD 422 (432) T ss_pred HhCCeEEEEEEEec Confidence 77888777666544 No 213 >COG2520 Predicted methyltransferase [General function prediction only] Probab=98.74 E-value=3.3e-07 Score=78.22 Aligned_cols=109 Identities=20% Similarity=0.156 Sum_probs=91.9 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI 166 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 166 (298) .+|.+|||+-+|.|.+++.+|.....+|+++|++|..++..++++..+++.+.+..+++|+.......+.+|.|++...- T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341) T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341) T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC Confidence 46999999999999999999994333599999999999999999999999888999999999886444789999875432 Q ss_pred cccChH-HHHHHHhhcccCCcEEEEEeCCCCCCC Q psy2408 167 FHMNHS-AALNEARRVLKSGSILTLTDLPLLSVS 199 (298) Q Consensus 167 ~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~ 199 (298) +. .++..+.+.+++||.+...+....... T Consensus 267 ----~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~ 296 (341) T COG2520 267 ----SAHEFLPLALELLKDGGIIHYYEFVPEDDI 296 (341) T ss_pred ----cchhhHHHHHHHhhcCcEEEEEeccchhhc Confidence 33 788889999999999999887755543 No 214 >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... Probab=98.73 E-value=9.7e-08 Score=76.31 Aligned_cols=117 Identities=26% Similarity=0.324 Sum_probs=74.1 Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHH-------hcCC-CCceEE Q psy2408 72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCR-VDGITISKFQQESAMKTAK-------AEGL-LDKVNF 142 (298) Q Consensus 72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~-------~~~~-~~~i~~ 142 (298) ........+++.+++.++...+|||||.|......+...+++ .+|+++.+...+.|+.... ..+. ...+.+ T Consensus 26 i~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l 105 (205) T PF08123_consen 26 ISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL 105 (205) T ss_dssp CHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE T ss_pred cCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee Confidence 345567778888999999999999999999988888766765 9999999988877765332 2232 246788 Q ss_pred EECCCCCCCCC---CCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEE Q psy2408 143 LHGDALNLPFD---NDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTL 190 (298) Q Consensus 143 ~~~d~~~~~~~---~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i 190 (298) ..+|+.+.++. -...|+|+++.... .+. ..|.+...-||+|.+++- T Consensus 106 ~~gdfl~~~~~~~~~s~AdvVf~Nn~~F--~~~l~~~L~~~~~~lk~G~~IIs 156 (205) T PF08123_consen 106 IHGDFLDPDFVKDIWSDADVVFVNNTCF--DPDLNLALAELLLELKPGARIIS 156 (205) T ss_dssp ECS-TTTHHHHHHHGHC-SEEEE--TTT---HHHHHHHHHHHTTS-TT-EEEE T ss_pred eccCccccHhHhhhhcCCCEEEEecccc--CHHHHHHHHHHHhcCCCCCEEEE Confidence 89998764321 13579999887653 333 777788888999877654 No 215 >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] Probab=98.70 E-value=3e-07 Score=79.04 Aligned_cols=138 Identities=18% Similarity=0.167 Sum_probs=101.6 Q ss_pred CCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC-------------------- Q psy2408 52 GGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG-------------------- 111 (298) Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-------------------- 111 (298) |..+|--.|......+++ .+.++..|+...+..++..++|-=||+|.+.+..|.... T Consensus 158 G~sLhkRGyR~~~g~ApL---ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~ 234 (381) T COG0116 158 GDSLHKRGYRVYDGPAPL---KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDK 234 (381) T ss_pred CcchhhccccccCCCCCc---hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccH Confidence 444443344442333333 466777888888888889999999999999998887421 Q ss_pred -------------C-------eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccccc-ccC Q psy2408 112 -------------C-------RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIF-HMN 170 (298) Q Consensus 112 -------------~-------~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~-~~~ 170 (298) + .++|+|+++.+++.|+.++..+|+.+.|+|.++|+..++-+-+.+|+|+++--.- -+. T Consensus 235 ~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg 314 (381) T COG0116 235 DLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLG 314 (381) T ss_pred HHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcC Confidence 1 3779999999999999999999999999999999999854337899999863321 111 Q ss_pred h------H--HHHHHHhhcccCCcEEEEEe Q psy2408 171 H------S--AALNEARRVLKSGSILTLTD 192 (298) Q Consensus 171 ~------~--~~l~~~~r~LkpgG~l~i~~ 192 (298) + . .+.+.+++.++-.++.+++. T Consensus 315 ~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381) T COG0116 315 SEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381) T ss_pred ChhhHHHHHHHHHHHHHHHhcCCceEEEEc Confidence 1 2 55566777777777877764 No 216 >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... Probab=98.69 E-value=1.2e-07 Score=78.30 Aligned_cols=105 Identities=19% Similarity=0.088 Sum_probs=79.0 Q ss_pred CCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCC---CCceEEEECCCCCC-CCCCC-CeeEEE Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGL---LDKVNFLHGDALNL-PFDND-SFDGGW 161 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~---~~~i~~~~~d~~~~-~~~~~-~fD~V~ 161 (298) .+.+||-||.|.|..+..+.+.. ..++++||+++..++.|++.+..... +++++++..|...+ .-..+ +||+|+ T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246) T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246) T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE Confidence 56799999999999999998864 36999999999999999998774321 36899999998764 11224 899998 Q ss_pred ecccccccC-----hHHHHHHHhhcccCCcEEEEEe Q psy2408 162 FFESIFHMN-----HSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 162 ~~~~l~~~~-----~~~~l~~~~r~LkpgG~l~i~~ 192 (298) .-..-...+ ...+++.+.+.|+|+|.+++.. T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246) T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246) T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc Confidence 743321111 2299999999999999999875 No 217 >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. Probab=98.68 E-value=4.4e-07 Score=72.58 Aligned_cols=120 Identities=23% Similarity=0.199 Sum_probs=86.7 Q ss_pred EEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCC-CeeEEEeccccccc Q psy2408 92 FIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDND-SFDGGWFFESIFHM 169 (298) Q Consensus 92 vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~fD~V~~~~~l~~~ 169 (298) |.||||-.|.+..+|.+..- .+++++|+++.-++.|++.+...++.+++++..+|..+. ++.+ ..|.|+..++-- T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~~~e~~d~ivIAGMGG-- 77 (205) T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LKPGEDVDTIVIAGMGG-- 77 (205) T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-H-- T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cCCCCCCCEEEEecCCH-- Confidence 68999999999999999632 379999999999999999999999999999999997652 2333 489998766542 Q ss_pred ChH--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEe Q psy2408 170 NHS--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDD 239 (298) Q Consensus 170 ~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 239 (298) .. .+|.+....++....|++.... ....++.+|.+.||.+++..- T Consensus 78 -~lI~~ILe~~~~~~~~~~~lILqP~~------------------------~~~~LR~~L~~~gf~I~~E~l 124 (205) T PF04816_consen 78 -ELIIEILEAGPEKLSSAKRLILQPNT------------------------HAYELRRWLYENGFEIIDEDL 124 (205) T ss_dssp -HHHHHHHHHTGGGGTT--EEEEEESS-------------------------HHHHHHHHHHTTEEEEEEEE T ss_pred -HHHHHHHHhhHHHhccCCeEEEeCCC------------------------ChHHHHHHHHHCCCEEEEeEE Confidence 22 7777777777776777775333 234788999999999887554 No 218 >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. Probab=98.67 E-value=4.2e-08 Score=74.92 Aligned_cols=71 Identities=30% Similarity=0.463 Sum_probs=55.5 Q ss_pred eEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--CCCCC-eeEEEe Q psy2408 91 RFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--FDNDS-FDGGWF 162 (298) Q Consensus 91 ~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~-fD~V~~ 162 (298) .|+|+.||.|..++.+|+. ..+|+++|+++..++.++.++.-.|+.++|.++++|+.++. +.... +|+|++ T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163) T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163) T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE Confidence 7999999999999999994 66999999999999999999999999899999999987752 22122 799986 No 219 >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. Probab=98.67 E-value=2.3e-07 Score=77.02 Aligned_cols=103 Identities=25% Similarity=0.348 Sum_probs=66.5 Q ss_pred CCeEEEeCCCC-CHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHH-hcCCCCceEEEECCCCCCCCCCCCeeEEEecc Q psy2408 89 GQRFIDIGCGF-GLSGIRLAKAK--GCRVDGITISKFQQESAMKTAK-AEGLLDKVNFLHGDALNLPFDNDSFDGGWFFE 164 (298) Q Consensus 89 ~~~vLDiGcG~-G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~-~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~ 164 (298) +.+|+=||||. ...++.+++.. +..++++|+++..++.+++... ..++..++.|+++|....+..-..||+|+... T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276) T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276) T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh Confidence 45999999997 55566666553 5789999999999999999887 56777889999999987654446899998766 Q ss_pred cccccC-hH-HHHHHHhhcccCCcEEEEE Q psy2408 165 SIFHMN-HS-AALNEARRVLKSGSILTLT 191 (298) Q Consensus 165 ~l~~~~-~~-~~l~~~~r~LkpgG~l~i~ 191 (298) ...--. +. +++.++.+.++||+.+++- T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276) T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276) T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEE T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEe Confidence 554333 44 9999999999999988885 No 220 >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. Probab=98.64 E-value=2.8e-07 Score=79.41 Aligned_cols=121 Identities=21% Similarity=0.200 Sum_probs=84.0 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh--------cCCeEEEEeCCHHHHHHHHHHHHhcCCCCc-eEEEE Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA--------KGCRVDGITISKFQQESAMKTAKAEGLLDK-VNFLH 144 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--------~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~-i~~~~ 144 (298) ..+++.+.+.+...++.+|||.+||+|.+...+.+. ....++|+|+++.++..|+.++.-.+.... ..+.. T Consensus 32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~ 111 (311) T PF02384_consen 32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQ 111 (311) T ss_dssp HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEE T ss_pred HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccc Confidence 556667777777778889999999999998888763 356899999999999999888766554332 45888 Q ss_pred CCCCCCCCC--CCCeeEEEeccccccc--------------------ChH--HHHHHHhhcccCCcEEEEEeCC Q psy2408 145 GDALNLPFD--NDSFDGGWFFESIFHM--------------------NHS--AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 145 ~d~~~~~~~--~~~fD~V~~~~~l~~~--------------------~~~--~~l~~~~r~LkpgG~l~i~~~~ 194 (298) .|....+.. .+.||+|+++-.+-.. ... .++..+.+.|++||++.+..+. T Consensus 112 ~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311) T PF02384_consen 112 GDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311) T ss_dssp S-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH T ss_pred cccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc Confidence 887654322 4789999985332211 112 7889999999999997776543 No 221 >KOG3201|consensus Probab=98.62 E-value=4.9e-08 Score=72.68 Aligned_cols=151 Identities=15% Similarity=0.198 Sum_probs=100.2 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCC-CHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCC--ceEEEECCCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGF-GLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLD--KVNFLHGDALN 149 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~--~i~~~~~d~~~ 149 (298) +.+.-.+++....-.|.+|||+|.|. |..+..+|.. ....|...|-++..++..+.....+.... ++.....+... T Consensus 15 eala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~ 94 (201) T KOG3201|consen 15 EALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG 94 (201) T ss_pred HHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh Confidence 44555566555555688999999995 6666666664 35689999999999888777654331111 11111111111 Q ss_pred --CCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHH Q psy2408 150 --LPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDL 226 (298) Q Consensus 150 --~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (298) .......||.|++.+++..-... .+++.+++.|+|.|+-++..+-.. .+.+.+.+. T Consensus 95 aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg---------------------~sL~kF~de 153 (201) T KOG3201|consen 95 AQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG---------------------QSLQKFLDE 153 (201) T ss_pred hHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCccc---------------------chHHHHHHH Confidence 11234689999999999766666 999999999999999777543321 234567788 Q ss_pred HHhCCCcEEEEEeCCCCcc Q psy2408 227 LNKSGFELIKIDDITSHVM 245 (298) Q Consensus 227 l~~~Gf~~~~~~~~~~~~~ 245 (298) ....||.+.-.+++...++ T Consensus 154 ~~~~gf~v~l~enyde~iw 172 (201) T KOG3201|consen 154 VGTVGFTVCLEENYDEAIW 172 (201) T ss_pred HHhceeEEEecccHhHHHH Confidence 8999998877665544443 No 222 >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] Probab=98.62 E-value=9.3e-07 Score=70.68 Aligned_cols=130 Identities=21% Similarity=0.144 Sum_probs=96.7 Q ss_pred CCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC-eeEEEecccc Q psy2408 89 GQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS-FDGGWFFESI 166 (298) Q Consensus 89 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-fD~V~~~~~l 166 (298) +.+++|||+|.|.-+..++-. ++.+++.+|....-+...+....+.+++ |++++++.++++... .. ||+|++..+. T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~-~~~~D~vtsRAva 145 (215) T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE-KKQYDVVTSRAVA 145 (215) T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc-cccCcEEEeehcc Confidence 579999999999999998843 5678999999999999999998888884 699999999987532 23 9999987653 Q ss_pred cccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCCCc Q psy2408 167 FHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHV 244 (298) Q Consensus 167 ~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~ 244 (298) +. .++.-+..++++||.+++.-... ... -..+........|+.+..+..+.... T Consensus 146 ----~L~~l~e~~~pllk~~g~~~~~k~~~------------~~~--------e~~e~~~a~~~~~~~~~~~~~~~~p~ 200 (215) T COG0357 146 ----SLNVLLELCLPLLKVGGGFLAYKGLA------------GKD--------ELPEAEKAILPLGGQVEKVFSLTVPE 200 (215) T ss_pred ----chHHHHHHHHHhcccCCcchhhhHHh------------hhh--------hHHHHHHHHHhhcCcEEEEEEeecCC Confidence 34 66677788999999875421110 000 12356667777888888777665543 No 223 >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional Probab=98.61 E-value=7.4e-07 Score=84.68 Aligned_cols=121 Identities=18% Similarity=0.150 Sum_probs=89.4 Q ss_pred HHHHHHHHHHhCCC-CCCCeEEEeCCCCCHHHHHHHHh------------------------------------------ Q psy2408 73 SDKLSRIMINKTSI-TKGQRFIDIGCGFGLSGIRLAKA------------------------------------------ 109 (298) Q Consensus 73 ~~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~------------------------------------------ 109 (298) .+.++..|+...+. .++..++|.+||+|.+.+..+.. T Consensus 174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702) T PRK11783 174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702) T ss_pred cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc Confidence 35666777777776 56789999999999999887652 Q ss_pred -cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC--CCCeeEEEeccccc-ccCh---H-HHHHHHhhc Q psy2408 110 -KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD--NDSFDGGWFFESIF-HMNH---S-AALNEARRV 181 (298) Q Consensus 110 -~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fD~V~~~~~l~-~~~~---~-~~l~~~~r~ 181 (298) ...+++|+|+++.+++.|+.++...|+.+.+.+.++|+.+++.+ .++||+|+++--.. .+.+ . .+.+.+.+. T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~ 333 (702) T PRK11783 254 ELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRR 333 (702) T ss_pred ccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHH Confidence 01269999999999999999999999988899999999887543 35799999974432 1221 1 343444444 Q ss_pred c---cCCcEEEEEeC Q psy2408 182 L---KSGSILTLTDL 193 (298) Q Consensus 182 L---kpgG~l~i~~~ 193 (298) + .+|+.+++... T Consensus 334 lk~~~~g~~~~llt~ 348 (702) T PRK11783 334 LKQQFGGWNAALFSS 348 (702) T ss_pred HHHhCCCCeEEEEeC Confidence 4 48888877544 No 224 >COG3897 Predicted methyltransferase [General function prediction only] Probab=98.60 E-value=3.4e-07 Score=70.62 Aligned_cols=118 Identities=21% Similarity=0.337 Sum_probs=91.0 Q ss_pred HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC Q psy2408 73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF 152 (298) Q Consensus 73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 152 (298) ...+.+++..+-..-.|++|||+|+|+|..++..+......|+..|+.+.....++-+++.+++ .+.+...|... T Consensus 64 G~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g--- 138 (218) T COG3897 64 GQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG--- 138 (218) T ss_pred hHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC--- Confidence 3556777877777778999999999999999988885445899999999999888888888885 48888888766 Q ss_pred CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCC Q psy2408 153 DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPL 195 (298) Q Consensus 153 ~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~ 195 (298) ++..||+++...+++.=+.. .++.-..++...|-.+++.++.. T Consensus 139 ~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R 182 (218) T COG3897 139 SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGR 182 (218) T ss_pred CCcceeEEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCC Confidence 35789999999988765555 77774445555555666655553 No 225 >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] Probab=98.60 E-value=9.1e-07 Score=77.12 Aligned_cols=125 Identities=22% Similarity=0.239 Sum_probs=95.6 Q ss_pred HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC Q psy2408 73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK---GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN 149 (298) Q Consensus 73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~ 149 (298) |+.-.......+.+.+|.+|||++++.|.=+..+++.. +..|+++|.++.-+...++++...|+. ++.+++.|... T Consensus 141 Qd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~ 219 (355) T COG0144 141 QDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARR 219 (355) T ss_pred cCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEeccccc Confidence 34444455567788999999999999999999999864 356799999999999999999999986 47888888765 Q ss_pred CC--CC-CCCeeEEEe------cccccccCh----------------H-HHHHHHhhcccCCcEEEEEeCCCCCC Q psy2408 150 LP--FD-NDSFDGGWF------FESIFHMNH----------------S-AALNEARRVLKSGSILTLTDLPLLSV 198 (298) Q Consensus 150 ~~--~~-~~~fD~V~~------~~~l~~~~~----------------~-~~l~~~~r~LkpgG~l~i~~~~~~~~ 198 (298) ++ .+ .++||.|++ .+++.--++ . ++|..+.++|||||.|+.++.+.... T Consensus 220 ~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e 294 (355) T COG0144 220 LAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE 294 (355) T ss_pred ccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh Confidence 42 12 235999986 233321111 2 88999999999999999987775543 No 226 >PRK00536 speE spermidine synthase; Provisional Probab=98.59 E-value=7.9e-07 Score=73.56 Aligned_cols=99 Identities=11% Similarity=-0.002 Sum_probs=75.4 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc--CC-CCceEEEECCCCCCCCCCCCeeEEEec Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAE--GL-LDKVNFLHGDALNLPFDNDSFDGGWFF 163 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~--~~-~~~i~~~~~d~~~~~~~~~~fD~V~~~ 163 (298) +.+.+||=||.|.|..+..+.+.. .+|+.||++++.++.+++.++.. ++ +++++++.. +.+ ...++||+|++- T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD 146 (262) T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICL 146 (262) T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEc Confidence 355799999999999999999954 49999999999999999965531 11 346766652 221 123689999975 Q ss_pred ccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 164 ESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 164 ~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) .. .++.+.+.+++.|+|||.++...- T Consensus 147 s~----~~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262) T PRK00536 147 QE----PDIHKIDGLKRMLKEDGVFISVAK 172 (262) T ss_pred CC----CChHHHHHHHHhcCCCcEEEECCC Confidence 32 334899999999999999988643 No 227 >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... Probab=98.56 E-value=3.8e-06 Score=66.73 Aligned_cols=150 Identities=17% Similarity=0.128 Sum_probs=95.3 Q ss_pred HHHHHHHHHh---CCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC Q psy2408 74 DKLSRIMINK---TSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL 148 (298) Q Consensus 74 ~~~~~~l~~~---~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~ 148 (298) ..+...++.- +.+.+|.+||-+|.++|....+++... ...|++|+.|+......-..++.. .|+-.+..|+. T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr 132 (229) T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDAR 132 (229) T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TT T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCC Confidence 4455555443 567899999999999999999999863 469999999997766555555544 57888999998 Q ss_pred CC---CCCCCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchH Q psy2408 149 NL---PFDNDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHY 223 (298) Q Consensus 149 ~~---~~~~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (298) .. ..--+.+|+|++-- . -++. -++.++...||+||.+++.--...-... ..-...+ .+- T Consensus 133 ~P~~Y~~lv~~VDvI~~DV-a--Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t--~~p~~vf-----------~~e 196 (229) T PF01269_consen 133 HPEKYRMLVEMVDVIFQDV-A--QPDQARIAALNARHFLKPGGHLIISIKARSIDST--ADPEEVF-----------AEE 196 (229) T ss_dssp SGGGGTTTS--EEEEEEE--S--STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SS--SSHHHHH-----------HHH T ss_pred ChHHhhcccccccEEEecC-C--ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCc--CCHHHHH-----------HHH Confidence 74 11235899998633 2 3444 7888888999999999987433111111 0011111 123 Q ss_pred HHHHHhCCCcEEEEEeCCC Q psy2408 224 PDLLNKSGFELIKIDDITS 242 (298) Q Consensus 224 ~~~l~~~Gf~~~~~~~~~~ 242 (298) .+.|++.||++.+...+.+ T Consensus 197 ~~~L~~~~~~~~e~i~LeP 215 (229) T PF01269_consen 197 VKKLKEEGFKPLEQITLEP 215 (229) T ss_dssp HHHHHCTTCEEEEEEE-TT T ss_pred HHHHHHcCCChheEeccCC Confidence 3567888999988776643 No 228 >COG4798 Predicted methyltransferase [General function prediction only] Probab=98.55 E-value=4.1e-07 Score=69.99 Aligned_cols=156 Identities=16% Similarity=0.107 Sum_probs=98.9 Q ss_pred HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC--CeEEEEeCCHHHH------HHHHHHHHhcCCCCceEEEECCCCCC Q psy2408 79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQ------ESAMKTAKAEGLLDKVNFLHGDALNL 150 (298) Q Consensus 79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l------~~a~~~~~~~~~~~~i~~~~~d~~~~ 150 (298) .++...+++++++|+|+-.|.|.++..++...+ ..|+++-+.+... ........ .....|.+.+..+...+ T Consensus 39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~-e~~~aN~e~~~~~~~A~ 117 (238) T COG4798 39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAR-EPVYANVEVIGKPLVAL 117 (238) T ss_pred ceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhh-hhhhhhhhhhCCccccc Confidence 456677889999999999999999999988643 4677766544311 11111111 11223455555555555 Q ss_pred CCCCCCeeEEEeccccccc------ChH--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcch Q psy2408 151 PFDNDSFDGGWFFESIFHM------NHS--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEH 222 (298) Q Consensus 151 ~~~~~~fD~V~~~~~l~~~------~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (298) + +.+..|+++....-+-+ +.. .+.+.+++.|||||.+++.+.......+ .... ...+..+... T Consensus 118 ~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~-~~dt-------~~~~ri~~a~ 188 (238) T COG4798 118 G-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSG-LSDT-------ITLHRIDPAV 188 (238) T ss_pred C-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCC-hhhh-------hhhcccChHH Confidence 4 33556666542222111 222 8999999999999999999887655444 1111 1224556778 Q ss_pred HHHHHHhCCCcEEEEEeCCCCc Q psy2408 223 YPDLLNKSGFELIKIDDITSHV 244 (298) Q Consensus 223 ~~~~l~~~Gf~~~~~~~~~~~~ 244 (298) +....+.+||.......+.-+. T Consensus 189 V~a~veaaGFkl~aeS~ilaNp 210 (238) T COG4798 189 VIAEVEAAGFKLEAESEILANP 210 (238) T ss_pred HHHHHHhhcceeeeeehhhcCC Confidence 8889999999988877665443 No 229 >KOG3987|consensus Probab=98.54 E-value=1.8e-08 Score=78.07 Aligned_cols=144 Identities=15% Similarity=0.114 Sum_probs=90.2 Q ss_pred CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccc Q psy2408 89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFH 168 (298) Q Consensus 89 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 168 (298) +.++||+|+|.|..+..++-.. -+|++.++|..|..+.+.. + .+++ ...++.-.+-+||+|.|...+.. T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~kk----~----ynVl--~~~ew~~t~~k~dli~clNlLDR 181 (288) T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKK----N----YNVL--TEIEWLQTDVKLDLILCLNLLDR 181 (288) T ss_pred CeeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhhc----C----Ccee--eehhhhhcCceeehHHHHHHHHh Confidence 4699999999999999887743 3688999999988877644 1 2221 12222222457999999999988 Q ss_pred cChH-HHHHHHhhcccC-CcEEEEEeCCCC------CCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeC Q psy2408 169 MNHS-AALNEARRVLKS-GSILTLTDLPLL------SVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDI 240 (298) Q Consensus 169 ~~~~-~~l~~~~r~Lkp-gG~l~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 240 (298) .-++ ++|+.++.+|+| +|+++++-..+- +....+..-..+........--....+.++|+.+||.+.....+ T Consensus 182 c~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrl 261 (288) T KOG3987|consen 182 CFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRL 261 (288) T ss_pred hcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcC Confidence 8888 999999999999 798877532211 11100000111111111100011234567789999988776665 Q ss_pred CCC Q psy2408 241 TSH 243 (298) Q Consensus 241 ~~~ 243 (298) +.- T Consensus 262 PYL 264 (288) T KOG3987|consen 262 PYL 264 (288) T ss_pred Cee Confidence 543 No 230 >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] Probab=98.53 E-value=2.2e-06 Score=66.33 Aligned_cols=104 Identities=38% Similarity=0.519 Sum_probs=75.3 Q ss_pred EEEeCCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC--CCCCC-CCeeEEEecccc Q psy2408 92 FIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN--LPFDN-DSFDGGWFFESI 166 (298) Q Consensus 92 vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~-~~fD~V~~~~~l 166 (298) ++|+|||+|... .+..... ..++++|+++.++..++......+. ..+.+...|... +++.. ..||++ +.... T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 128 (257) T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLV-ISLLV 128 (257) T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEE-eeeee Confidence 999999999977 4444222 4899999999999985554432111 115788888776 67665 489999 55444 Q ss_pred cccChH-HHHHHHhhcccCCcEEEEEeCCCCCC Q psy2408 167 FHMNHS-AALNEARRVLKSGSILTLTDLPLLSV 198 (298) Q Consensus 167 ~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~ 198 (298) .+..+. ..+.++.+.++|+|.+++........ T Consensus 129 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (257) T COG0500 129 LHLLPPAKALRELLRVLKPGGRLVLSDLLRDGL 161 (257) T ss_pred hhcCCHHHHHHHHHHhcCCCcEEEEEeccCCCC Confidence 444437 99999999999999999987775543 No 231 >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. Probab=98.51 E-value=6.5e-07 Score=78.11 Aligned_cols=77 Identities=32% Similarity=0.515 Sum_probs=61.2 Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC Q psy2408 71 QGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL 150 (298) Q Consensus 71 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~ 150 (298) .....+...+++.++..++ +|||+-||.|.++..++. ...+|+|+|.++.+++.|+.++..+++. |++|+.+++.++ T Consensus 180 ~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~-~~~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~~~~~ 256 (352) T PF05958_consen 180 EQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAK-KAKKVIGVEIVEEAVEDARENAKLNGID-NVEFIRGDAEDF 256 (352) T ss_dssp HHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHC-CSSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHC T ss_pred HHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHh-hCCeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEeeccch Confidence 3567888888888887666 899999999999999999 4679999999999999999999999984 799998876543 No 232 >PF13679 Methyltransf_32: Methyltransferase domain Probab=98.51 E-value=2.3e-06 Score=64.70 Aligned_cols=100 Identities=25% Similarity=0.253 Sum_probs=72.1 Q ss_pred CCCCeEEEeCCCCCHHHHHHHH-----hcCCeEEEEeCCHHHHHHHHHHHHhcC--CCCceEEEECCCCCCCCCCCCeeE Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAK-----AKGCRVDGITISKFQQESAMKTAKAEG--LLDKVNFLHGDALNLPFDNDSFDG 159 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~~v~~vD~s~~~l~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~fD~ 159 (298) .+..+|+|+|||.|.++..++. .++.+|+++|.++..++.+..+....+ +..++.+...+....+. ....++ T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 102 (141) T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDI 102 (141) T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeE Confidence 5778999999999999999998 567899999999999999999988776 44566777776655432 456777 Q ss_pred EEecccccccChHHHHHHHhhcccCCcEEEEE Q psy2408 160 GWFFESIFHMNHSAALNEARRVLKSGSILTLT 191 (298) Q Consensus 160 V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~ 191 (298) ++..++--.+.+ .+|+.+.+ |+-..++. T Consensus 103 ~vgLHaCG~Ls~-~~l~~~~~---~~~~~l~~ 130 (141) T PF13679_consen 103 LVGLHACGDLSD-RALRLFIR---PNARFLVL 130 (141) T ss_pred EEEeecccchHH-HHHHHHHH---cCCCEEEE Confidence 776444432222 55555555 55444443 No 233 >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. Probab=98.46 E-value=1.7e-06 Score=75.69 Aligned_cols=99 Identities=18% Similarity=0.134 Sum_probs=81.7 Q ss_pred CCeEEEeCCCCCHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-CCCCCeeEEEeccc Q psy2408 89 GQRFIDIGCGFGLSGIRLAKAK-G-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-FDNDSFDGGWFFES 165 (298) Q Consensus 89 ~~~vLDiGcG~G~~~~~l~~~~-~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~V~~~~~ 165 (298) +.+|||+.||+|..++.++.+. | .+|+++|+++..++.++++++.+++. ++.+++.|+..+- ...+.||+|...- T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP- 122 (374) T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP- 122 (374) T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC- Confidence 4699999999999999999863 4 58999999999999999999888764 5889999987652 1236799998733 Q ss_pred ccccChH-HHHHHHhhcccCCcEEEEEe Q psy2408 166 IFHMNHS-AALNEARRVLKSGSILTLTD 192 (298) Q Consensus 166 l~~~~~~-~~l~~~~r~LkpgG~l~i~~ 192 (298) + ..+ .++..+.+.++++|.|+++. T Consensus 123 f---Gs~~~fld~al~~~~~~glL~vTa 147 (374) T TIGR00308 123 F---GTPAPFVDSAIQASAERGLLLVTA 147 (374) T ss_pred C---CCcHHHHHHHHHhcccCCEEEEEe Confidence 2 455 89999999999999999983 No 234 >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... Probab=98.46 E-value=1e-06 Score=73.85 Aligned_cols=105 Identities=15% Similarity=0.150 Sum_probs=79.5 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD 153 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 153 (298) ..+++.+++.+.+.++..|||+|+|+|.++..|++. +.+++++|+++.+.+..++.+. ..++++++.+|+.++..+ T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~ 91 (262) T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLY 91 (262) T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGG T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccH Confidence 567888889988889999999999999999999985 5899999999999999998765 236799999999998654 Q ss_pred C---CCeeEEEecccccccChHHHHHHHhhcccC Q psy2408 154 N---DSFDGGWFFESIFHMNHSAALNEARRVLKS 184 (298) Q Consensus 154 ~---~~fD~V~~~~~l~~~~~~~~l~~~~r~Lkp 184 (298) . +....|+++-.. ++.. .++.++...-+. T Consensus 92 ~~~~~~~~~vv~NlPy-~is~-~il~~ll~~~~~ 123 (262) T PF00398_consen 92 DLLKNQPLLVVGNLPY-NISS-PILRKLLELYRF 123 (262) T ss_dssp GHCSSSEEEEEEEETG-TGHH-HHHHHHHHHGGG T ss_pred HhhcCCceEEEEEecc-cchH-HHHHHHhhcccc Confidence 3 355666665433 2222 555555553333 No 235 >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] Probab=98.40 E-value=6.2e-06 Score=69.73 Aligned_cols=108 Identities=17% Similarity=0.094 Sum_probs=79.3 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHH--HhcC----CCCceEEEECCCCCC-CCCCCCee Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTA--KAEG----LLDKVNFLHGDALNL-PFDNDSFD 158 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~--~~~~----~~~~i~~~~~d~~~~-~~~~~~fD 158 (298) +...+||-+|.|.|.....+.+.+ -.+++-||++|.|++.++... ...+ -+++++++..|+.++ .-..+.|| T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508) T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508) T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc Confidence 445699999999999999999976 359999999999999998432 2211 135789999998876 22346899 Q ss_pred EEEeccc------ccccChHHHHHHHhhcccCCcEEEEEeCC Q psy2408 159 GGWFFES------IFHMNHSAALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 159 ~V~~~~~------l~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 194 (298) .|+...- +.-+-..++..-+.+.|+++|.+++..-. T Consensus 368 ~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags 409 (508) T COG4262 368 VVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS 409 (508) T ss_pred EEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC Confidence 9986321 11111127888899999999999987443 No 236 >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] Probab=98.37 E-value=6.5e-06 Score=65.00 Aligned_cols=111 Identities=22% Similarity=0.170 Sum_probs=76.1 Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC Q psy2408 72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC--RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN 149 (298) Q Consensus 72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~ 149 (298) +..++.+..-+.--+.++..|+|+|+.+|.++..+++..+. .|+++|+.+- ....++.++++|++. T Consensus 29 Aa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~------------~~~~~V~~iq~d~~~ 96 (205) T COG0293 29 AAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM------------KPIPGVIFLQGDITD 96 (205) T ss_pred HHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc------------ccCCCceEEeeeccC Confidence 33444333333322467899999999999999999997543 5999999762 112358999999987 Q ss_pred CC--------CCCCCeeEEEecccc--------cccChH----HHHHHHhhcccCCcEEEEEeCC Q psy2408 150 LP--------FDNDSFDGGWFFESI--------FHMNHS----AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 150 ~~--------~~~~~fD~V~~~~~l--------~~~~~~----~~l~~~~r~LkpgG~l~i~~~~ 194 (298) -+ +....+|+|++-.+= .|.... .++.-+..+|+|||.+++-.+- T Consensus 97 ~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205) T COG0293 97 EDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205) T ss_pred ccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe Confidence 43 334557999863222 222222 5666777899999999997765 No 237 >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] Probab=98.36 E-value=2.8e-05 Score=60.58 Aligned_cols=149 Identities=16% Similarity=0.187 Sum_probs=101.4 Q ss_pred HHHHHHHHHh---CCCCCCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC Q psy2408 74 DKLSRIMINK---TSITKGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN 149 (298) Q Consensus 74 ~~~~~~l~~~---~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~ 149 (298) ..+...++.- +++++|.+||=+|..+|....+++...+ ..+++|++|+......-..+.+. +|+-.+..|+.. T Consensus 59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~ 135 (231) T COG1889 59 SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARK 135 (231) T ss_pred hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCC Confidence 4455555544 4578999999999999999999998654 68999999998777666666554 478888999877 Q ss_pred CC---CCCCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHH Q psy2408 150 LP---FDNDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYP 224 (298) Q Consensus 150 ~~---~~~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (298) .. +--+..|+|+.- +. -++. -+..++...|++||.++++--...-..+ ..-...+. +-. T Consensus 136 P~~Y~~~Ve~VDviy~D-VA--Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT--~dp~~vf~-----------~ev 199 (231) T COG1889 136 PEKYRHLVEKVDVIYQD-VA--QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVT--ADPEEVFK-----------DEV 199 (231) T ss_pred cHHhhhhcccccEEEEe-cC--CchHHHHHHHHHHHhcccCCeEEEEEEeeccccc--CCHHHHHH-----------HHH Confidence 31 112568888652 22 2344 6778899999999987776544322222 11122221 223 Q ss_pred HHHHhCCCcEEEEEeCC Q psy2408 225 DLLNKSGFELIKIDDIT 241 (298) Q Consensus 225 ~~l~~~Gf~~~~~~~~~ 241 (298) ..|++.||++.+..++. T Consensus 200 ~kL~~~~f~i~e~~~Le 216 (231) T COG1889 200 EKLEEGGFEILEVVDLE 216 (231) T ss_pred HHHHhcCceeeEEeccC Confidence 45788899998876654 No 238 >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... Probab=98.36 E-value=1.7e-06 Score=73.15 Aligned_cols=123 Identities=22% Similarity=0.260 Sum_probs=92.6 Q ss_pred HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC Q psy2408 73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL 150 (298) Q Consensus 73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~ 150 (298) ++.-.......+.+.++..|||++++.|.=+..+++.. ...++++|+++..+...+.++...|+. ++.+...|.... T Consensus 70 Qd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~ 148 (283) T PF01189_consen 70 QDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKL 148 (283) T ss_dssp HHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHH T ss_pred cccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccc Confidence 34444444555667899999999999999999999875 369999999999999999999999985 577777787665 Q ss_pred -C-CCCCCeeEEEe------cccccccCh----------------H-HHHHHHhhcc----cCCcEEEEEeCCCC Q psy2408 151 -P-FDNDSFDGGWF------FESIFHMNH----------------S-AALNEARRVL----KSGSILTLTDLPLL 196 (298) Q Consensus 151 -~-~~~~~fD~V~~------~~~l~~~~~----------------~-~~l~~~~r~L----kpgG~l~i~~~~~~ 196 (298) + .....||.|+. .+++..-++ . ++|+++.+.+ +|||+++-++-... T Consensus 149 ~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283) T PF01189_consen 149 DPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283) T ss_dssp HHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH T ss_pred cccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH Confidence 1 22346999986 222322221 1 8899999999 99999998876543 No 239 >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... Probab=98.32 E-value=4e-07 Score=72.02 Aligned_cols=105 Identities=20% Similarity=0.208 Sum_probs=66.3 Q ss_pred HHHHHhCC-CCC--CCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC- Q psy2408 78 RIMINKTS-ITK--GQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP- 151 (298) Q Consensus 78 ~~l~~~~~-~~~--~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~- 151 (298) ..+.+..+ +.+ +.+|||+||++|.++..+.+.. ..+|+|+|+.+. ... .++.++++|+.+.. T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~ 77 (181) T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPEN 77 (181) T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEH T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhH Confidence 34455555 444 4899999999999999999965 479999999764 011 24566666654320 Q ss_pred -------CC--CCCeeEEEecccccccCh-----------H-HHHHHHhhcccCCcEEEEEeCC Q psy2408 152 -------FD--NDSFDGGWFFESIFHMNH-----------S-AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 152 -------~~--~~~fD~V~~~~~l~~~~~-----------~-~~l~~~~r~LkpgG~l~i~~~~ 194 (298) ++ .+.+|+|++-.+.....+ - ..+.-+...|+|||.+++-.+. T Consensus 78 ~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181) T PF01728_consen 78 IKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181) T ss_dssp SHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS T ss_pred HHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc Confidence 11 268999998663332221 1 5555666789999998887655 No 240 >KOG2730|consensus Probab=98.30 E-value=5e-07 Score=70.91 Aligned_cols=73 Identities=29% Similarity=0.451 Sum_probs=61.4 Q ss_pred CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC----CCCCCCeeEEEe Q psy2408 89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL----PFDNDSFDGGWF 162 (298) Q Consensus 89 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~V~~ 162 (298) ...|+|.-||.|+.+...+. .++.|+++|+++.-+..|+.+++-.|++++|.|+++|+.++ .+....+|+|+. T Consensus 95 ~~~iidaf~g~gGntiqfa~-~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263) T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFAL-QGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263) T ss_pred cchhhhhhhcCCchHHHHHH-hCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec Confidence 45899999999998888887 57899999999999999999999999999999999999875 233334556654 No 241 >KOG1709|consensus Probab=98.22 E-value=1.6e-05 Score=62.41 Aligned_cols=104 Identities=18% Similarity=0.193 Sum_probs=79.0 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC--CCCCCCeeEEEecc Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL--PFDNDSFDGGWFFE 164 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~~~ 164 (298) ..|.+||++|-|-|.....+.+....+=+.++..+..++..+...-.. ..|+.+..+--++. .++++.||.|+.-- T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl~~L~d~~FDGI~yDT 177 (271) T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVLNTLPDKHFDGIYYDT 177 (271) T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhhccccccCcceeEeec Confidence 567899999999999998888875556667899999888887663322 24566666544432 45688999998755 Q ss_pred cccccChH-HHHHHHhhcccCCcEEEEEe Q psy2408 165 SIFHMNHS-AALNEARRVLKSGSILTLTD 192 (298) Q Consensus 165 ~l~~~~~~-~~l~~~~r~LkpgG~l~i~~ 192 (298) .-++..+. .+.+.+.|+|||+|++-... T Consensus 178 y~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271) T KOG1709|consen 178 YSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271) T ss_pred hhhHHHHHHHHHHHHhhhcCCCceEEEec Confidence 44777777 99999999999999887654 No 242 >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. Probab=98.18 E-value=2.7e-05 Score=72.02 Aligned_cols=75 Identities=23% Similarity=0.098 Sum_probs=53.8 Q ss_pred CCCeEEEeCCCCCHHHHHHHHhc---------CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----CCC Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKAK---------GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----PFD 153 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~~---------~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~ 153 (298) ...+|||.|||+|.+...++... ...++|+|+++..+..++..+...+. ..+.+.+.|.... .-. T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524) T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524) T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc Confidence 34699999999999998887653 14789999999999999988776541 1245555554321 111 Q ss_pred CCCeeEEEec Q psy2408 154 NDSFDGGWFF 163 (298) Q Consensus 154 ~~~fD~V~~~ 163 (298) .+.||+|+++ T Consensus 110 ~~~fD~IIgN 119 (524) T TIGR02987 110 LDLFDIVITN 119 (524) T ss_pred cCcccEEEeC Confidence 2579999985 No 243 >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A. Probab=98.17 E-value=2.2e-05 Score=63.68 Aligned_cols=94 Identities=15% Similarity=0.192 Sum_probs=67.5 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF 152 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 152 (298) +.+.+.+...+ ++..+|+|||||.-.++..+... .+..|+|+|++..+++.........+++ ..+...|...-+ T Consensus 93 d~fY~~if~~~--~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~- 167 (251) T PF07091_consen 93 DEFYDEIFGRI--PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP- 167 (251) T ss_dssp HHHHHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH- T ss_pred HHHHHHHHhcC--CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC- Confidence 34444454443 45789999999999998887765 3689999999999999999998888764 667777877643 Q ss_pred CCCCeeEEEecccccccChH Q psy2408 153 DNDSFDGGWFFESIFHMNHS 172 (298) Q Consensus 153 ~~~~fD~V~~~~~l~~~~~~ 172 (298) +....|+.+..-++..+... T Consensus 168 ~~~~~DlaLllK~lp~le~q 187 (251) T PF07091_consen 168 PKEPADLALLLKTLPCLERQ 187 (251) T ss_dssp TTSEESEEEEET-HHHHHHH T ss_pred CCCCcchhhHHHHHHHHHHH Confidence 45789999998888777666 No 244 >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D. Probab=98.17 E-value=4.2e-07 Score=65.15 Aligned_cols=98 Identities=23% Similarity=0.315 Sum_probs=44.2 Q ss_pred EEeCCCCCHHHHHHHHhc--C--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC--CCCCCCeeEEEecccc Q psy2408 93 IDIGCGFGLSGIRLAKAK--G--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL--PFDNDSFDGGWFFESI 166 (298) Q Consensus 93 LDiGcG~G~~~~~l~~~~--~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~~~~l 166 (298) ||+|+..|..+..+++.. . .+++++|..+. .+..++.+++.++..+++++.++..+. .++.+++|+++.-. - T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~ 78 (106) T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-D 78 (106) T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-- T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-C Confidence 689999999998888752 2 37999999985 344445555566667899999998654 23357899998644 2 Q ss_pred cccChH-HHHHHHhhcccCCcEEEEEe Q psy2408 167 FHMNHS-AALNEARRVLKSGSILTLTD 192 (298) Q Consensus 167 ~~~~~~-~~l~~~~r~LkpgG~l~i~~ 192 (298) |..+.. ..+..+.+.|+|||.+++.+ T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106) T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106) T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE- T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeC Confidence 222233 88999999999999999875 No 245 >KOG2187|consensus Probab=98.15 E-value=2.2e-05 Score=69.47 Aligned_cols=121 Identities=23% Similarity=0.295 Sum_probs=85.1 Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC- Q psy2408 72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL- 150 (298) Q Consensus 72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~- 150 (298) +.+.+...+-++++++++..+||+.||||.++..+++ .-.+|+|+++++..++.|+.++..+|+. |.+|+++-++++ T Consensus 367 ~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~~ 444 (534) T KOG2187|consen 367 AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAEDLF 444 (534) T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcchhhhcchhcCcc-ceeeeecchhhcc Confidence 4567788888999999999999999999999999998 4569999999999999999999999985 799999955553 Q ss_pred C-CCC---CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC Q psy2408 151 P-FDN---DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 151 ~-~~~---~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 194 (298) + +.. ++-++|....--.---+..+++.+.+.-.+--.+++++-. T Consensus 445 ~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~ 492 (534) T KOG2187|consen 445 PSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNP 492 (534) T ss_pred chhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEEcCH Confidence 1 111 1223332211111000115666666655566566665433 No 246 >COG4076 Predicted RNA methylase [General function prediction only] Probab=98.13 E-value=6.7e-06 Score=63.07 Aligned_cols=98 Identities=18% Similarity=0.211 Sum_probs=77.5 Q ss_pred CeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEec--cccc Q psy2408 90 QRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFF--ESIF 167 (298) Q Consensus 90 ~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~--~~l~ 167 (298) ..+.|+|+|+|.++...++ ..-+|++++.++.....|.+++.-.|. .+++++.+|+.+..| +..|+|+|- .+.. T Consensus 34 d~~~DLGaGsGiLs~~Aa~-~A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f--e~ADvvicEmlDTaL 109 (252) T COG4076 34 DTFADLGAGSGILSVVAAH-AAERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF--ENADVVICEMLDTAL 109 (252) T ss_pred hceeeccCCcchHHHHHHh-hhceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc--cccceeHHHHhhHHh Confidence 6899999999999988877 456999999999999999988765554 579999999999887 568998763 2222 Q ss_pred ccChH-HHHHHHhhcccCCcEEEEE Q psy2408 168 HMNHS-AALNEARRVLKSGSILTLT 191 (298) Q Consensus 168 ~~~~~-~~l~~~~r~LkpgG~l~i~ 191 (298) -.... ..++.+...|+-.+.++=. T Consensus 110 i~E~qVpV~n~vleFLr~d~tiiPq 134 (252) T COG4076 110 IEEKQVPVINAVLEFLRYDPTIIPQ 134 (252) T ss_pred hcccccHHHHHHHHHhhcCCccccH Confidence 22333 8888888899988887643 No 247 >KOG2352|consensus Probab=98.10 E-value=4.4e-05 Score=67.41 Aligned_cols=114 Identities=19% Similarity=0.203 Sum_probs=88.9 Q ss_pred HHHHHHhCCCCCCC-eEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCC Q psy2408 77 SRIMINKTSITKGQ-RFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDND 155 (298) Q Consensus 77 ~~~l~~~~~~~~~~-~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 155 (298) ...+...+ .+-. ++|-+|||.-.+...+.+..-..++.+|.|+..++......... ..-+.+...|+..+.|+++ T Consensus 38 ~~~i~~~~--~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l~fedE 113 (482) T KOG2352|consen 38 SGSIMKYL--SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQLVFEDE 113 (482) T ss_pred HHHHHHhh--chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--CcceEEEEecchhccCCCc Confidence 33344444 3444 99999999998888887744468999999999999888775422 2348899999999999999 Q ss_pred CeeEEEecccccccChH-----------HHHHHHhhcccCCcEEEEEeCC Q psy2408 156 SFDGGWFFESIFHMNHS-----------AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 156 ~fD~V~~~~~l~~~~~~-----------~~l~~~~r~LkpgG~l~i~~~~ 194 (298) +||+|+.-..+.++-.. ..+.+++|+++|||+++..... T Consensus 114 SFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482) T KOG2352|consen 114 SFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482) T ss_pred ceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee Confidence 99999998888776432 5578999999999997776663 No 248 >KOG2798|consensus Probab=98.07 E-value=7.7e-05 Score=62.02 Aligned_cols=151 Identities=20% Similarity=0.177 Sum_probs=95.1 Q ss_pred CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHH---HhcC-------------------------CC--- Q psy2408 89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTA---KAEG-------------------------LL--- 137 (298) Q Consensus 89 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~---~~~~-------------------------~~--- 137 (298) .-+||--|||.|+++..|+. .|..+-|=++|--|+--..-.+ +..+ .+ T Consensus 151 ki~iLvPGaGlGRLa~dla~-~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369) T KOG2798|consen 151 KIRILVPGAGLGRLAYDLAC-LGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369) T ss_pred CceEEecCCCchhHHHHHHH-hcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc Confidence 46899999999999999998 5666667788777654333222 1000 00 Q ss_pred --------CceEEEECCCCCC-C--CCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHH Q psy2408 138 --------DKVNFLHGDALNL-P--FDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKF 205 (298) Q Consensus 138 --------~~i~~~~~d~~~~-~--~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~ 205 (298) ...+.-.+|+.+. + -..++||+|+.++.+....+- +++..+..+|+|||..+=..+..-........ T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~- 308 (369) T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGV- 308 (369) T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCC- Confidence 0111223454443 1 112479999998888777777 99999999999999876543322111100000 Q ss_pred HHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCCCccc Q psy2408 206 KEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMP 246 (298) Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~ 246 (298) ..-..--++.+++..+....||+++..+.+...+.. T Consensus 309 -----~~~~siEls~edl~~v~~~~GF~~~ke~~Idt~Y~~ 344 (369) T KOG2798|consen 309 -----ENEMSIELSLEDLKRVASHRGFEVEKERGIDTTYGT 344 (369) T ss_pred -----cccccccccHHHHHHHHHhcCcEEEEeeeeecccCC Confidence 000111246788999999999999988877666655 No 249 >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A. Probab=98.07 E-value=2.7e-05 Score=57.71 Aligned_cols=117 Identities=23% Similarity=0.307 Sum_probs=74.6 Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--CCCCCeeEEEecccccccC------hH----HHHHHHhh Q psy2408 113 RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--FDNDSFDGGWFFESIFHMN------HS----AALNEARR 180 (298) Q Consensus 113 ~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~~l~~~~------~~----~~l~~~~r 180 (298) +|+++|+.++.++..++++.+.++..++++++.+=..+. .+.+++|+|+.+....--. .+ .+++.+.+ T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140) T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140) T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH Confidence 589999999999999999999998889999998766652 2335899998754331111 12 88999999 Q ss_pred cccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCCC Q psy2408 181 VLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSH 243 (298) Q Consensus 181 ~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 243 (298) +|+|||.+.+..+.-.+... .+... ..+|.+-|....|.+.....+... T Consensus 81 lL~~gG~i~iv~Y~GH~gG~--eE~~a------------v~~~~~~L~~~~~~V~~~~~~N~~ 129 (140) T PF06962_consen 81 LLKPGGIITIVVYPGHPGGK--EESEA------------VEEFLASLDQKEFNVLKYQFINQK 129 (140) T ss_dssp HEEEEEEEEEEE--STCHHH--HHHHH------------HHHHHHTS-TTTEEEEEEEESS-S T ss_pred hhccCCEEEEEEeCCCCCCH--HHHHH------------HHHHHHhCCcceEEEEEEEccCCC Confidence 99999999998776433211 11111 224445555667888777766544 No 250 >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] Probab=98.04 E-value=0.00025 Score=56.35 Aligned_cols=102 Identities=24% Similarity=0.203 Sum_probs=78.5 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccc Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFES 165 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 165 (298) +.+.++.||||-.|.+..++.+.. ...+++.|+++.-++.|.+.++..++.+++++..+|....--+++.+|+|+..++ T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226) T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226) T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC Confidence 456679999999999999999864 4589999999999999999999999999999999998553223458999986554 Q ss_pred ccccChH--HHHHHHhhcccCCcEEEEE Q psy2408 166 IFHMNHS--AALNEARRVLKSGSILTLT 191 (298) Q Consensus 166 l~~~~~~--~~l~~~~r~LkpgG~l~i~ 191 (298) -- .. .+|.+-..-|+.--++++. T Consensus 95 GG---~lI~~ILee~~~~l~~~~rlILQ 119 (226) T COG2384 95 GG---TLIREILEEGKEKLKGVERLILQ 119 (226) T ss_pred cH---HHHHHHHHHhhhhhcCcceEEEC Confidence 32 22 6666666666644455553 No 251 >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional Probab=98.04 E-value=6.4e-05 Score=64.00 Aligned_cols=87 Identities=17% Similarity=0.181 Sum_probs=64.1 Q ss_pred CCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccc Q psy2408 86 ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFES 165 (298) Q Consensus 86 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 165 (298) +.+|.++||+||++|.++..+.+ .|++|++||..+ +-... .. .+++.....|...+..+.+.+|.++|-.+ T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~-rG~~V~AVD~g~-l~~~L----~~---~~~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357) T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVR-RGMFVTAVDNGP-MAQSL----MD---TGQVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357) T ss_pred cCCCCEEEEeCCCCcHHHHHHHH-cCCEEEEEechh-cCHhh----hC---CCCEEEEeccCcccCCCCCCCCEEEEecc Confidence 36899999999999999999999 578999999654 22221 11 25688888887665323678999988554 Q ss_pred ccccChH-HHHHHHhhcccCC Q psy2408 166 IFHMNHS-AALNEARRVLKSG 185 (298) Q Consensus 166 l~~~~~~-~~l~~~~r~Lkpg 185 (298) ..| ...+-+...|..| T Consensus 280 ----e~P~rva~lm~~Wl~~g 296 (357) T PRK11760 280 ----EKPARVAELMAQWLVNG 296 (357) T ss_pred ----cCHHHHHHHHHHHHhcC Confidence 345 7778888888766 No 252 >PRK10742 putative methyltransferase; Provisional Probab=98.04 E-value=3.8e-05 Score=62.57 Aligned_cols=90 Identities=17% Similarity=0.209 Sum_probs=70.9 Q ss_pred HHHHHhCCCCCCC--eEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc------C--CCCceEEEECCC Q psy2408 78 RIMINKTSITKGQ--RFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAE------G--LLDKVNFLHGDA 147 (298) Q Consensus 78 ~~l~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~------~--~~~~i~~~~~d~ 147 (298) +.+++.++++++. +|||+-+|+|..+..++. .|++|+++|-++......++.+... + +..+++++++|. T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las-~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250) T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLAS-VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250) T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH Confidence 5677888888888 999999999999999999 5889999999999998888887764 2 224688899988 Q ss_pred CCC-CCCCCCeeEEEecccccc Q psy2408 148 LNL-PFDNDSFDGGWFFESIFH 168 (298) Q Consensus 148 ~~~-~~~~~~fD~V~~~~~l~~ 168 (298) ..+ .-..++||+|++--.+.| T Consensus 155 ~~~L~~~~~~fDVVYlDPMfp~ 176 (250) T PRK10742 155 LTALTDITPRPQVVYLDPMFPH 176 (250) T ss_pred HHHHhhCCCCCcEEEECCCCCC Confidence 664 212247999987555444 No 253 >TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. Probab=98.01 E-value=4.7e-05 Score=64.40 Aligned_cols=89 Identities=18% Similarity=0.137 Sum_probs=73.5 Q ss_pred HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--- Q psy2408 76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--- 151 (298) Q Consensus 76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--- 151 (298) +.+.+++.+.+.++..++|.-||.|..+..+++.. +++|+|+|.++.+++.+++++... .+++.++++++.++. T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l 85 (305) T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHL 85 (305) T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHH Confidence 46677888888888999999999999999999874 589999999999999999988754 357999999988752 Q ss_pred --CCCCCeeEEEecccc Q psy2408 152 --FDNDSFDGGWFFESI 166 (298) Q Consensus 152 --~~~~~fD~V~~~~~l 166 (298) ...+++|.|++...+ T Consensus 86 ~~~~~~~vDgIl~DLGv 102 (305) T TIGR00006 86 DELLVTKIDGILVDLGV 102 (305) T ss_pred HhcCCCcccEEEEeccC Confidence 233679999875554 No 254 >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A. Probab=97.98 E-value=0.0011 Score=53.70 Aligned_cols=141 Identities=18% Similarity=0.197 Sum_probs=77.7 Q ss_pred HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC- Q psy2408 76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD- 153 (298) Q Consensus 76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~- 153 (298) -+..+.+...+ .|.+||-+|=.. ..++.++.. .+.+|+.+|+++..++..++.+++.|++ ++.+..|+.+ |+| T Consensus 33 Ra~~~~~~gdL-~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~-~LP~ 107 (243) T PF01861_consen 33 RAALMAERGDL-EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRD-PLPE 107 (243) T ss_dssp HHHHHHHTT-S-TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS----T T ss_pred HHHHHHhcCcc-cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccc-cCCH Confidence 34445555444 578999999554 334444432 5679999999999999999999999985 9999999987 333 Q ss_pred --CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhC Q psy2408 154 --NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKS 230 (298) Q Consensus 154 --~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (298) .++||++++. --+...-. -++.+....||..|......+...+.. ...+ -++.+.+.+. T Consensus 108 ~~~~~fD~f~TD-PPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s-----~~~~------------~~~Q~~l~~~ 169 (243) T PF01861_consen 108 ELRGKFDVFFTD-PPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEAS-----PDKW------------LEVQRFLLEM 169 (243) T ss_dssp TTSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT-------HHHH------------HHHHHHHHTS T ss_pred HHhcCCCEEEeC-CCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCc-----HHHH------------HHHHHHHHHC Confidence 3899999863 22222223 788899999987773333333322211 1111 1566778899 Q ss_pred CCcEEEEEe Q psy2408 231 GFELIKIDD 239 (298) Q Consensus 231 Gf~~~~~~~ 239 (298) ||.+.++.. T Consensus 170 gl~i~dii~ 178 (243) T PF01861_consen 170 GLVITDIIP 178 (243) T ss_dssp --EEEEEEE T ss_pred CcCHHHHHh Confidence 998877553 No 255 >TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. Probab=97.97 E-value=3.6e-05 Score=58.21 Aligned_cols=58 Identities=21% Similarity=0.194 Sum_probs=49.5 Q ss_pred eEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC Q psy2408 91 RFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN 149 (298) Q Consensus 91 ~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~ 149 (298) ++||+|||.|..+..+++.. +.+++++|+++.+.+.+++.+...+++ ++.+++..+.+ T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143) T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143) T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC Confidence 48999999999999998863 458999999999999999999887764 58888877655 No 256 >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] Probab=97.94 E-value=4.9e-06 Score=61.73 Aligned_cols=56 Identities=23% Similarity=0.342 Sum_probs=46.1 Q ss_pred eEEEECCCCCCCCCCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCC Q psy2408 140 VNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPL 195 (298) Q Consensus 140 i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~ 195 (298) +.+++......+|.+++.|+|++.++++|+.-. .++++++|+|||||+|-++.+.. T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185) T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185) T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc Confidence 344444444557889999999999999999876 99999999999999999986653 No 257 >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. Probab=97.92 E-value=0.00022 Score=60.05 Aligned_cols=84 Identities=20% Similarity=0.165 Sum_probs=50.9 Q ss_pred CCeEEEeCCCCCHHH-HHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc-CCCCceEEEECCCC-C----CCCCCCCeeEEE Q psy2408 89 GQRFIDIGCGFGLSG-IRLAKAKGCRVDGITISKFQQESAMKTAKAE-GLLDKVNFLHGDAL-N----LPFDNDSFDGGW 161 (298) Q Consensus 89 ~~~vLDiGcG~G~~~-~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~-~~~~~i~~~~~d~~-~----~~~~~~~fD~V~ 161 (298) .-++||||||...+= +..++.++.+++|.|+++..++.|++.+..+ ++.++|.++...-. . +..+++.||+++ T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299) T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299) T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe Confidence 458999999987663 4344447999999999999999999999998 89899998765322 1 122346899999 Q ss_pred ecccccccChH Q psy2408 162 FFESIFHMNHS 172 (298) Q Consensus 162 ~~~~l~~~~~~ 172 (298) |+--++...+. T Consensus 183 CNPPFy~s~~e 193 (299) T PF05971_consen 183 CNPPFYSSQEE 193 (299) T ss_dssp E-----SS--- T ss_pred cCCccccChhh Confidence 98888766554 No 258 >KOG1122|consensus Probab=97.88 E-value=0.00012 Score=63.31 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=88.5 Q ss_pred hCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC---CCCCCe Q psy2408 83 KTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP---FDNDSF 157 (298) Q Consensus 83 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~f 157 (298) .+.+.+|.+|||+++..|.=+.++|..+ ...+++.|.+...+...+..+...|+. +..+.+.|..++| ++. +| T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~~~-~f 313 (460) T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEFPG-SF 313 (460) T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccccccCc-cc Confidence 3456899999999999999998888864 358999999999999999999999985 5667788887664 443 89 Q ss_pred eEEEe----cc--cccc------c---------Ch-H-HHHHHHhhcccCCcEEEEEeCCCCCCC Q psy2408 158 DGGWF----FE--SIFH------M---------NH-S-AALNEARRVLKSGSILTLTDLPLLSVS 199 (298) Q Consensus 158 D~V~~----~~--~l~~------~---------~~-~-~~l~~~~r~LkpgG~l~i~~~~~~~~~ 199 (298) |.|+. +. ++.- . .. . ++|-.+..++++||+|+-++......- T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~E 378 (460) T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEE 378 (460) T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhh Confidence 99985 22 2211 1 11 1 778888899999999999877665433 No 259 >PLN02668 indole-3-acetate carboxyl methyltransferase Probab=97.85 E-value=0.0053 Score=53.81 Aligned_cols=152 Identities=17% Similarity=0.174 Sum_probs=84.5 Q ss_pred CCeEEEeCCCCCHHHHHHHHh----------------cCCeEEEEeCCHHH-HHHHHHH--HHh------cC---CCCc- Q psy2408 89 GQRFIDIGCGFGLSGIRLAKA----------------KGCRVDGITISKFQ-QESAMKT--AKA------EG---LLDK- 139 (298) Q Consensus 89 ~~~vLDiGcG~G~~~~~l~~~----------------~~~~v~~vD~s~~~-l~~a~~~--~~~------~~---~~~~- 139 (298) ..+|+|+|||+|.++..+... +..+|..-|+-.+- -...+.. +.. .. ...+ T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386) T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386) T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc Confidence 569999999999887665331 12456666653211 1111111 000 00 0001 Q ss_pred --eEEEECCCCCCCCCCCCeeEEEecccccccChH---------------------------------------HHHHHH Q psy2408 140 --VNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---------------------------------------AALNEA 178 (298) Q Consensus 140 --i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---------------------------------------~~l~~~ 178 (298) +.-+.+.+..--||.++.++++++.++|++... .+|+.= T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386) T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386) T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH Confidence 122223444334788999999999999987631 334444 Q ss_pred hhcccCCcEEEEEeCCCCCCCCChh-----HH----H----HHHHh-----------hcccCCCCcchHHHHHHhCC-Cc Q psy2408 179 RRVLKSGSILTLTDLPLLSVSKNDN-----KF----K----EYVKK-----------NIHSNFILVEHYPDLLNKSG-FE 233 (298) Q Consensus 179 ~r~LkpgG~l~i~~~~~~~~~~~~~-----~~----~----~~~~~-----------~~~~~~~~~~~~~~~l~~~G-f~ 233 (298) .+-|.|||++++.........+... .+ . .+... ....+..+.+|+++.+++.| |. T Consensus 224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~ 303 (386) T PLN02668 224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFA 303 (386) T ss_pred HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEE Confidence 5678899999998777643111000 11 0 11111 11234578999999999887 66 Q ss_pred EEEEEeC Q psy2408 234 LIKIDDI 240 (298) Q Consensus 234 ~~~~~~~ 240 (298) +..++.+ T Consensus 304 I~~le~~ 310 (386) T PLN02668 304 IDKLEVF 310 (386) T ss_pred eeeeEEe Confidence 6655543 No 260 >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] Probab=97.83 E-value=0.00044 Score=59.25 Aligned_cols=102 Identities=25% Similarity=0.294 Sum_probs=73.5 Q ss_pred HHhCCCCCCCeEEEeCCC-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC-CCCCCCCCCCee Q psy2408 81 INKTSITKGQRFIDIGCG-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD-ALNLPFDNDSFD 158 (298) Q Consensus 81 ~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~fD 158 (298) +....+.||.+|+-+|+| .|.++..+++..+++|+++|.|++-++.|++.-. -.++... ......-.+.|| T Consensus 159 lk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA-------d~~i~~~~~~~~~~~~~~~d 231 (339) T COG1064 159 LKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA-------DHVINSSDSDALEAVKEIAD 231 (339) T ss_pred hhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC-------cEEEEcCCchhhHHhHhhCc Confidence 344677899999999998 3667777888778999999999999999987732 2344432 111111123489 Q ss_pred EEEecccccccChHHHHHHHhhcccCCcEEEEEeCCC Q psy2408 159 GGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPL 195 (298) Q Consensus 159 ~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 195 (298) +|+..-. +..+....+.|+++|++++.-... T Consensus 232 ~ii~tv~------~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339) T COG1064 232 AIIDTVG------PATLEPSLKALRRGGTLVLVGLPG 262 (339) T ss_pred EEEECCC------hhhHHHHHHHHhcCCEEEEECCCC Confidence 8875443 467778889999999999987664 No 261 >KOG4058|consensus Probab=97.83 E-value=0.00024 Score=52.48 Aligned_cols=123 Identities=13% Similarity=0.153 Sum_probs=89.0 Q ss_pred HHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC Q psy2408 70 AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN 149 (298) Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~ 149 (298) ..+..+-++.++..+.-.+..+.+|+|+|.|.+....++..-...+|+++++..+..++-+.-.+++.....|..-|+-+ T Consensus 54 VpAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK 133 (199) T KOG4058|consen 54 VPATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWK 133 (199) T ss_pred cCccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhh Confidence 34556667777888877776799999999999988888842257899999999999999998888888888999999888 Q ss_pred CCCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCC Q psy2408 150 LPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLL 196 (298) Q Consensus 150 ~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 196 (298) ..+.+ |..|+.+.+=.-+++ +-.++..-|..+..++..-+..+ T Consensus 134 ~dl~d--y~~vviFgaes~m~d--Le~KL~~E~p~nt~vvacRFPLP 176 (199) T KOG4058|consen 134 VDLRD--YRNVVIFGAESVMPD--LEDKLRTELPANTRVVACRFPLP 176 (199) T ss_pred ccccc--cceEEEeehHHHHhh--hHHHHHhhCcCCCeEEEEecCCC Confidence 76644 544444333333333 33344555667777776655543 No 262 >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] Probab=97.79 E-value=7.2e-05 Score=60.05 Aligned_cols=156 Identities=17% Similarity=0.161 Sum_probs=95.8 Q ss_pred HHHHHHHHHHHHhCCC-CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCc-eEEEECCCC Q psy2408 71 QGSDKLSRIMINKTSI-TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDK-VNFLHGDAL 148 (298) Q Consensus 71 ~~~~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~-i~~~~~d~~ 148 (298) ++...+... ++...+ .++..+||+|+.||.++..+.++...+|+++|....++..--+. +++ +.+...|+. T Consensus 62 RG~~KL~~a-le~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r 134 (245) T COG1189 62 RGGLKLEKA-LEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVR 134 (245) T ss_pred cHHHHHHHH-HHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc------CCcEEEEecCChh Confidence 344444444 455554 46889999999999999999995445899999988776654322 123 344455666 Q ss_pred CCCCC--CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhccc----CCCCcch Q psy2408 149 NLPFD--NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHS----NFILVEH 222 (298) Q Consensus 149 ~~~~~--~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 222 (298) .+... .+..|++++--++. +-..+|..+..+++|++-++...-+...... .......... +...... T Consensus 135 ~l~~~~~~~~~d~~v~DvSFI--SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr-----~~v~kkGvv~d~~~~~~v~~~ 207 (245) T COG1189 135 YLTPEDFTEKPDLIVIDVSFI--SLKLILPALLLLLKDGGDLVLLVKPQFEAGR-----EQVGKKGVVRDPKLHAEVLSK 207 (245) T ss_pred hCCHHHcccCCCeEEEEeehh--hHHHHHHHHHHhcCCCceEEEEecchhhhhh-----hhcCcCceecCcchHHHHHHH Confidence 55211 24678888755442 2228899999999999987775433221111 0000001111 1122456 Q ss_pred HHHHHHhCCCcEEEEEeC Q psy2408 223 YPDLLNKSGFELIKIDDI 240 (298) Q Consensus 223 ~~~~l~~~Gf~~~~~~~~ 240 (298) +.+++.+.||.+...... T Consensus 208 i~~~~~~~g~~~~gl~~S 225 (245) T COG1189 208 IENFAKELGFQVKGLIKS 225 (245) T ss_pred HHHHHhhcCcEEeeeEcc Confidence 778888899998876643 No 263 >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. Probab=97.63 E-value=0.0079 Score=52.22 Aligned_cols=163 Identities=18% Similarity=0.127 Sum_probs=83.0 Q ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh--------c---C------CeEEEEeCCH-HHHHHHH------HHHHh Q psy2408 78 RIMINKTSITKGQRFIDIGCGFGLSGIRLAKA--------K---G------CRVDGITISK-FQQESAM------KTAKA 133 (298) Q Consensus 78 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--------~---~------~~v~~vD~s~-~~l~~a~------~~~~~ 133 (298) ..+......+...+|+|+||.+|..+..+... . + .+|..-|+-. .+-...+ +.... T Consensus 6 ~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~ 85 (334) T PF03492_consen 6 KELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK 85 (334) T ss_dssp HHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH T ss_pred HHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC Confidence 33443333455679999999999998877542 1 1 3788888632 2211111 11111 Q ss_pred cCCCCceEEEECCCCCCCCCCCCeeEEEecccccccCh---------------------------------------H-H Q psy2408 134 EGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH---------------------------------------S-A 173 (298) Q Consensus 134 ~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~---------------------------------------~-~ 173 (298) .+ +--+.-+.+.+..--+|+++.|+++++.++||+.. . . T Consensus 86 ~~-~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~ 164 (334) T PF03492_consen 86 FR-NYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSS 164 (334) T ss_dssp TT-SEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHH T ss_pred Cc-eEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHH Confidence 11 11133445666654578899999999999888642 0 3 Q ss_pred HHHHHhhcccCCcEEEEEeCCCCCCCCC----hhHHHHH-------HHh-----------hcccCCCCcchHHHHHHhCC Q psy2408 174 ALNEARRVLKSGSILTLTDLPLLSVSKN----DNKFKEY-------VKK-----------NIHSNFILVEHYPDLLNKSG 231 (298) Q Consensus 174 ~l~~~~r~LkpgG~l~i~~~~~~~~~~~----~~~~~~~-------~~~-----------~~~~~~~~~~~~~~~l~~~G 231 (298) +|+.=.+-|+|||++++..+...+.... ...+..+ ... ....+..+.+|+...+++.| T Consensus 165 FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~g 244 (334) T PF03492_consen 165 FLKARAEELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEG 244 (334) T ss_dssp HHHHHHHHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHT T ss_pred HHHHhhheeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCC Confidence 4444456688999999987766552110 0111111 111 11234678899999987765 Q ss_pred -CcEEEEEeCC Q psy2408 232 -FELIKIDDIT 241 (298) Q Consensus 232 -f~~~~~~~~~ 241 (298) |.+..++.+. T Consensus 245 sF~I~~le~~~ 255 (334) T PF03492_consen 245 SFEIEKLELFE 255 (334) T ss_dssp SEEEEEEEEEE T ss_pred CEEEEEEEEEe Confidence 7776555443 No 264 >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. Probab=97.61 E-value=0.0003 Score=57.00 Aligned_cols=90 Identities=23% Similarity=0.390 Sum_probs=56.0 Q ss_pred HHHHHhCCCCCCC--eEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH---hcCC-----CCceEEEECCC Q psy2408 78 RIMINKTSITKGQ--RFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAK---AEGL-----LDKVNFLHGDA 147 (298) Q Consensus 78 ~~l~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~---~~~~-----~~~i~~~~~d~ 147 (298) +.+++.++++++. +|||.-+|.|..+..++. .|++|++++-|+.+....+.-+. ...- ..+++++++|. T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~-~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234) T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLAS-LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234) T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHH-HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHc-cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH Confidence 4567777777764 999999999999999987 79999999999977655554332 2111 13799999998 Q ss_pred CCC-CCCCCCeeEEEecccccc Q psy2408 148 LNL-PFDNDSFDGGWFFESIFH 168 (298) Q Consensus 148 ~~~-~~~~~~fD~V~~~~~l~~ 168 (298) .++ ..++++||+|++--++.+ T Consensus 142 ~~~L~~~~~s~DVVY~DPMFp~ 163 (234) T PF04445_consen 142 LEYLRQPDNSFDVVYFDPMFPE 163 (234) T ss_dssp CCHCCCHSS--SEEEE--S--- T ss_pred HHHHhhcCCCCCEEEECCCCCC Confidence 874 555789999998655543 No 265 >KOG4589|consensus Probab=97.53 E-value=0.00078 Score=51.96 Aligned_cols=97 Identities=13% Similarity=0.078 Sum_probs=62.7 Q ss_pred CCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC-CCCCC--------CCCC Q psy2408 86 ITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG-DALNL--------PFDN 154 (298) Q Consensus 86 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~-d~~~~--------~~~~ 154 (298) ++|+++|||+||.+|.++.-..+.. ...|.|||+-.- .+ + ..+.++.+ |+.+. .+|+ T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p---~-~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232) T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EP---P-EGATIIQGNDVTDPETYRKIFEALPN 134 (232) T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cC---C-CCcccccccccCCHHHHHHHHHhCCC Confidence 3689999999999999999888863 568999998421 11 1 22444554 66652 2567 Q ss_pred CCeeEEEeccccc----ccChH--------HHHHHHhhcccCCcEEEEEeCC Q psy2408 155 DSFDGGWFFESIF----HMNHS--------AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 155 ~~fD~V~~~~~l~----~~~~~--------~~l~~~~r~LkpgG~l~i~~~~ 194 (298) -..|+|++-..=. .+.|. .++.-....++|+|.++.-.+. T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~ 186 (232) T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWD 186 (232) T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEec Confidence 7889888632211 11222 3333444567899999887655 No 266 >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] Probab=97.49 E-value=0.00057 Score=57.86 Aligned_cols=109 Identities=15% Similarity=0.135 Sum_probs=72.5 Q ss_pred CCCeEEEeCCCCCHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHhcCCC---CceEEEECCCCCCCCCCCCeeEEEe Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKAK-G-CRVDGITISKFQQESAMKTAKAEGLL---DKVNFLHGDALNLPFDNDSFDGGWF 162 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~~-~-~~v~~vD~s~~~l~~a~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~fD~V~~ 162 (298) ...+|||+|.|.|..+..+-... . ..++.++.|+..-+............ .+..-++.|-..+|. ...|++|+. T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~-ad~ytl~i~ 191 (484) T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA-ADLYTLAIV 191 (484) T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc-cceeehhhh Confidence 45689999999998766554432 2 36777888886655555544332211 112223334334443 467999888 Q ss_pred cccccccChH----HHHHHHhhcccCCcEEEEEeCCCCC Q psy2408 163 FESIFHMNHS----AALNEARRVLKSGSILTLTDLPLLS 197 (298) Q Consensus 163 ~~~l~~~~~~----~~l~~~~r~LkpgG~l~i~~~~~~~ 197 (298) .+-|.+...+ ..++.+..++.|||.|+|.+...+. T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484) T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484) T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch Confidence 8777777655 6889999999999999999877443 No 267 >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. Probab=97.44 E-value=0.012 Score=49.18 Aligned_cols=147 Identities=14% Similarity=0.037 Sum_probs=92.0 Q ss_pred CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCCceEEEECCCCC-C-------CCCCCCee Q psy2408 89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEG--LLDKVNFLHGDALN-L-------PFDNDSFD 158 (298) Q Consensus 89 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~--~~~~i~~~~~d~~~-~-------~~~~~~fD 158 (298) ...|+.+|||.=.-...+....+.+++=+|. ++.++.=++.+...+ ...+.+++..|+.. + .+..+..- T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~pt 160 (260) T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPT 160 (260) T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCe Confidence 4579999999876666664322445555554 445555555555433 23568889999862 1 12223456 Q ss_pred EEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChh-HHHHHHHh------hcccCCCCcchHHHHHH Q psy2408 159 GGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDN-KFKEYVKK------NIHSNFILVEHYPDLLN 228 (298) Q Consensus 159 ~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~l~ 228 (298) ++++-+++.+++.. .+++.+.+...||+.+++.......... .. ........ .......+.+++..+|. T Consensus 161 l~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 239 (260) T TIGR00027 161 AWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEW-RAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLA 239 (260) T ss_pred eeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhH-HHHHHHHHHHhhhcccccccccCCChhhHHHHHH Confidence 78888999999887 8999999988899998886554311110 00 01111101 11123456889999999 Q ss_pred hCCCcEEEE Q psy2408 229 KSGFELIKI 237 (298) Q Consensus 229 ~~Gf~~~~~ 237 (298) +.||++... T Consensus 240 ~~Gw~~~~~ 248 (260) T TIGR00027 240 ERGWRASEH 248 (260) T ss_pred HCCCeeecC Confidence 999997654 No 268 >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. Probab=97.42 E-value=0.00036 Score=55.34 Aligned_cols=105 Identities=22% Similarity=0.254 Sum_probs=55.8 Q ss_pred CCCeEEEeCCCCCHHHHHHHHh---c--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----CC--CCC Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKA---K--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----FD--NDS 156 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~---~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~--~~~ 156 (298) ++..|+|+|.-.|..+..+|.. . .++|+|+|++.... .+...+...+.++|+++++|..+.. .. ... T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~--~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~ 109 (206) T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH--NRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASP 109 (206) T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSSTHHHHTSGSS--- T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh--chHHHhhccccCceEEEECCCCCHHHHHHHHHhhcc Confidence 3469999999999998888764 2 47999999953221 2223333445578999999987741 11 112 Q ss_pred eeEEEe-cccccccChH-HHHHHHhhcccCCcEEEEEeCC Q psy2408 157 FDGGWF-FESIFHMNHS-AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 157 fD~V~~-~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~ 194 (298) .+-++. -++-|.-..- ..|+....++++|+++++.+.. T Consensus 110 ~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206) T PF04989_consen 110 PHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTI 149 (206) T ss_dssp -SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHH T ss_pred CCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEecc Confidence 332322 2333333334 8888899999999999997654 No 269 >KOG1501|consensus Probab=97.39 E-value=0.00039 Score=60.47 Aligned_cols=96 Identities=20% Similarity=0.199 Sum_probs=68.0 Q ss_pred CeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC-CCCCeeEEEecccc-c Q psy2408 90 QRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF-DNDSFDGGWFFESI-F 167 (298) Q Consensus 90 ~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~V~~~~~l-~ 167 (298) ..|||||+|||.++...++..+-.|++++.-..|.+.|+....+.|..++|.++.---.+... +....|+++.-... + T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtE 147 (636) T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTE 147 (636) T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhhh Confidence 478999999999999888865568999999999999999999999999999998876655432 12335655532221 1 Q ss_pred ccCh-H-HHHHHHhhcc-cCC Q psy2408 168 HMNH-S-AALNEARRVL-KSG 185 (298) Q Consensus 168 ~~~~-~-~~l~~~~r~L-kpg 185 (298) -+.. . ..++++++.| +|| T Consensus 148 ligeGalps~qhAh~~L~~~n 168 (636) T KOG1501|consen 148 LIGEGALPSLQHAHDMLLVDN 168 (636) T ss_pred hhccccchhHHHHHHHhcccC Confidence 1222 1 5555665544 444 No 270 >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional Probab=97.36 E-value=0.0022 Score=58.50 Aligned_cols=100 Identities=21% Similarity=0.184 Sum_probs=70.9 Q ss_pred CCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-----------CC-- Q psy2408 86 ITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-----------LP-- 151 (298) Q Consensus 86 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-----------~~-- 151 (298) ..++.+|+-+|||. |..+...++..|+.|+++|.+++.++.++.. | .+++..|..+ +. T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl----G----A~~v~i~~~e~~~~~~gya~~~s~~ 233 (509) T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM----G----AEFLELDFEEEGGSGDGYAKVMSEE 233 (509) T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEEeccccccccccchhhhcchh Confidence 35789999999997 8888888888899999999999998888763 2 2222211111 10 Q ss_pred --------CCC--CCeeEEEecccccccChHHH-HHHHhhcccCCcEEEEEeC Q psy2408 152 --------FDN--DSFDGGWFFESIFHMNHSAA-LNEARRVLKSGSILTLTDL 193 (298) Q Consensus 152 --------~~~--~~fD~V~~~~~l~~~~~~~~-l~~~~r~LkpgG~l~i~~~ 193 (298) +.+ ..+|+|+.......-+.+.+ .++..+.+||||.++.... T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509) T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509) T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc Confidence 000 36899987665544444544 5999999999999887644 No 271 >KOG3115|consensus Probab=97.36 E-value=0.00079 Score=52.63 Aligned_cols=104 Identities=25% Similarity=0.383 Sum_probs=67.8 Q ss_pred CCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC------CCCceEEEECCCCCC-C--CCCCCee Q psy2408 89 GQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEG------LLDKVNFLHGDALNL-P--FDNDSFD 158 (298) Q Consensus 89 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~------~~~~i~~~~~d~~~~-~--~~~~~fD 158 (298) .-.+.|||||-|.+...|+... ..-+.|.++-...-+..++++.... .-.|+.+...+.... | +..++.+ T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249) T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249) T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc Confidence 3478999999999999999874 5689999998877777777766443 124566776665543 2 1222222 Q ss_pred EEEecccccccCh---------HHHHHHHhhcccCCcEEEEEe Q psy2408 159 GGWFFESIFHMNH---------SAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 159 ~V~~~~~l~~~~~---------~~~l~~~~r~LkpgG~l~i~~ 192 (298) -.+...---|+.. ..++.+..-+|++||.++..+ T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249) T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249) T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe Confidence 2222221122221 167888999999999988753 No 272 >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] Probab=97.33 E-value=0.0039 Score=57.00 Aligned_cols=120 Identities=21% Similarity=0.152 Sum_probs=85.9 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-----CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-----GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL 148 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~ 148 (298) ..+.+.|++.+.+.+..+|+|..||+|.+.....+.. ...++|.++++.....|+..+--+++...+....+|-. T Consensus 172 ~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl 251 (489) T COG0286 172 REVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTL 251 (489) T ss_pred HHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccc Confidence 5566667777776778899999999999877776653 26799999999999999999988887543455556554 Q ss_pred CCCC-----CCCCeeEEEeccccc-------------------cc-C-----hH-HHHHHHhhcccCCcEEEEEeC Q psy2408 149 NLPF-----DNDSFDGGWFFESIF-------------------HM-N-----HS-AALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 149 ~~~~-----~~~~fD~V~~~~~l~-------------------~~-~-----~~-~~l~~~~r~LkpgG~l~i~~~ 193 (298) .-|. ..+.||.|+++--+. +- . .. .+++.+...|+|||+..|..+ T Consensus 252 ~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489) T COG0286 252 SNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489) T ss_pred cCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec Confidence 4332 236699988743221 10 0 11 789999999999987665543 No 273 >KOG0024|consensus Probab=97.32 E-value=0.0009 Score=56.25 Aligned_cols=109 Identities=19% Similarity=0.174 Sum_probs=75.7 Q ss_pred HHHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC-C-CCCC---- Q psy2408 79 IMINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHG-D-ALNL---- 150 (298) Q Consensus 79 ~l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~-d-~~~~---- 150 (298) ....+..+++|.+||-+|+|+ |..+...++.+|+ +|+.+|+++..++.|++. |... +..... + ...+ T Consensus 160 HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~----Ga~~-~~~~~~~~~~~~~~~~v 234 (354) T KOG0024|consen 160 HACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF----GATV-TDPSSHKSSPQELAELV 234 (354) T ss_pred hhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh----CCeE-EeeccccccHHHHHHHH Confidence 445666778999999999997 8888888888775 899999999999999983 2211 111111 1 1111 Q ss_pred --CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCC Q psy2408 151 --PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLS 197 (298) Q Consensus 151 --~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 197 (298) .+....+|+++-+..++ ..++.....+++||.+++..+.... T Consensus 235 ~~~~g~~~~d~~~dCsG~~-----~~~~aai~a~r~gGt~vlvg~g~~~ 278 (354) T KOG0024|consen 235 EKALGKKQPDVTFDCSGAE-----VTIRAAIKATRSGGTVVLVGMGAEE 278 (354) T ss_pred HhhccccCCCeEEEccCch-----HHHHHHHHHhccCCEEEEeccCCCc Confidence 12234588887655544 5667778899999998888776543 No 274 >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] Probab=97.32 E-value=0.0025 Score=53.27 Aligned_cols=90 Identities=19% Similarity=0.151 Sum_probs=74.1 Q ss_pred HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC- Q psy2408 75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP- 151 (298) Q Consensus 75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~- 151 (298) -+....++.+.+.++...+|.--|.|..+..+.+.++ ++++|+|-++.+++.|+++....+ +++.+++.++.++. T Consensus 10 VLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~ 87 (314) T COG0275 10 VLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAE 87 (314) T ss_pred hHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHH Confidence 3567788888889999999999999999999999864 689999999999999999987654 68999999887752 Q ss_pred ----CCCCCeeEEEecccc Q psy2408 152 ----FDNDSFDGGWFFESI 166 (298) Q Consensus 152 ----~~~~~fD~V~~~~~l 166 (298) ...+++|.|+.-..+ T Consensus 88 ~l~~~~i~~vDGiL~DLGV 106 (314) T COG0275 88 ALKELGIGKVDGILLDLGV 106 (314) T ss_pred HHHhcCCCceeEEEEeccC Confidence 224688888864443 No 275 >COG4301 Uncharacterized conserved protein [Function unknown] Probab=97.30 E-value=0.0052 Score=49.72 Aligned_cols=146 Identities=16% Similarity=0.078 Sum_probs=91.4 Q ss_pred hhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-----C Q psy2408 37 TLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-----G 111 (298) Q Consensus 37 ~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-----~ 111 (298) -|||..++..|+.+..-+. |+.+..+. .........+.... .+.+.+|+|+|+..-+..+...+ . T Consensus 37 ~FYD~~GS~LFe~I~~LPE---YYpTRtEa----aIl~~~a~Eia~~~---g~~~lveLGsGns~Ktr~Llda~~~~~~~ 106 (321) T COG4301 37 YFYDDRGSELFEQITRLPE---YYPTRTEA----AILQARAAEIASIT---GACTLVELGSGNSTKTRILLDALAHRGSL 106 (321) T ss_pred eeecccHHHHHHHHhcccc---ccCchhHH----HHHHHHHHHHHHhh---CcceEEEecCCccHHHHHHHHHhhhcCCc Confidence 4788776677777654332 44441111 11223333344333 46799999999988887776652 2 Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-C-CCCCCCee-EEEecccccccChH---HHHHHHhhcccCC Q psy2408 112 CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-L-PFDNDSFD-GGWFFESIFHMNHS---AALNEARRVLKSG 185 (298) Q Consensus 112 ~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~fD-~V~~~~~l~~~~~~---~~l~~~~r~Lkpg 185 (298) .+++.+|+|...+...-+.+...-..-.+.-+++|... + .+|..+=- .++.-.++-++... .+|..+...|+|| T Consensus 107 ~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pG 186 (321) T COG4301 107 LRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPG 186 (321) T ss_pred ceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCc Confidence 68999999999887666555443322235556677643 2 12233323 33445666666544 9999999999999 Q ss_pred cEEEEEe Q psy2408 186 SILTLTD 192 (298) Q Consensus 186 G~l~i~~ 192 (298) -++++.. T Consensus 187 d~~LlGv 193 (321) T COG4301 187 DYFLLGV 193 (321) T ss_pred ceEEEec Confidence 9988853 No 276 >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity Probab=97.30 E-value=0.00041 Score=61.76 Aligned_cols=97 Identities=15% Similarity=0.114 Sum_probs=63.5 Q ss_pred CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCC--HHHHHHHHHHHHhcCCCCceEEEECCC-CCCCCCCCCeeEEEeccc Q psy2408 89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITIS--KFQQESAMKTAKAEGLLDKVNFLHGDA-LNLPFDNDSFDGGWFFES 165 (298) Q Consensus 89 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s--~~~l~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~fD~V~~~~~ 165 (298) -..|+|..+|.|.++..|... +.-|.-|=+. +..+... -+.|+-+ +. .|- +.++.=..+||+|.+.++ T Consensus 366 iRNVMDMnAg~GGFAAAL~~~-~VWVMNVVP~~~~ntL~vI----ydRGLIG---~y-hDWCE~fsTYPRTYDLlHA~~l 436 (506) T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDD-PVWVMNVVPVSGPNTLPVI----YDRGLIG---VY-HDWCEAFSTYPRTYDLLHADGL 436 (506) T ss_pred eeeeeeecccccHHHHHhccC-CceEEEecccCCCCcchhh----hhcccch---hc-cchhhccCCCCcchhheehhhh Confidence 358999999999999999873 3333222221 2222222 2234321 11 222 223322479999999999 Q ss_pred ccccChH----HHHHHHhhcccCCcEEEEEeCC Q psy2408 166 IFHMNHS----AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 166 l~~~~~~----~~l~~~~r~LkpgG~l~i~~~~ 194 (298) +....+. .+|-++-|+|+|+|.++|-+.. T Consensus 437 fs~~~~rC~~~~illEmDRILRP~G~~iiRD~~ 469 (506) T PF03141_consen 437 FSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV 469 (506) T ss_pred hhhhcccccHHHHHHHhHhhcCCCceEEEeccH Confidence 9887766 8999999999999999996543 No 277 >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] Probab=97.28 E-value=0.0033 Score=50.28 Aligned_cols=101 Identities=19% Similarity=0.186 Sum_probs=68.2 Q ss_pred HHHHHHHHHHHHHhCCC--CCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhc-CCCCceEEEEC Q psy2408 70 AQGSDKLSRIMINKTSI--TKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAE-GLLDKVNFLHG 145 (298) Q Consensus 70 ~~~~~~~~~~l~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~-~~~~~i~~~~~ 145 (298) ..+.+.+.+.+..-.+- .++.++||||.|.-.+=..+-.+ +|.+.+|.|+++..++.|+..+..+ ++...|++... T Consensus 58 AdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~q 137 (292) T COG3129 58 ADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQ 137 (292) T ss_pred hHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEec Confidence 44555555555444332 24568999999987654444333 6899999999999999999998866 66666766554 Q ss_pred C-CCCC----CCCCCCeeEEEecccccccC Q psy2408 146 D-ALNL----PFDNDSFDGGWFFESIFHMN 170 (298) Q Consensus 146 d-~~~~----~~~~~~fD~V~~~~~l~~~~ 170 (298) . -..+ --.++.||+++|+-.+|... T Consensus 138 k~~~~if~giig~nE~yd~tlCNPPFh~s~ 167 (292) T COG3129 138 KDSDAIFNGIIGKNERYDATLCNPPFHDSA 167 (292) T ss_pred cCccccccccccccceeeeEecCCCcchhH Confidence 2 2222 12358899999988776443 No 278 >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA:S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A. Probab=97.27 E-value=0.00097 Score=58.62 Aligned_cols=102 Identities=26% Similarity=0.268 Sum_probs=77.7 Q ss_pred CCCeEEEeCCCCCHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHhcCCCC-ceEEEECCCCCCC-CCCCCeeEEEec Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKAK-G-CRVDGITISKFQQESAMKTAKAEGLLD-KVNFLHGDALNLP-FDNDSFDGGWFF 163 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~~-~-~~v~~vD~s~~~l~~a~~~~~~~~~~~-~i~~~~~d~~~~~-~~~~~fD~V~~~ 163 (298) .+.+|||.=+|+|.=++..+.+. + .+|+.-|+|++.++.++.+++.+++.. ++.+.+.|+..+- .....||+|= T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~ID-- 126 (377) T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVID-- 126 (377) T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEE-- T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEE-- Confidence 45699999999999999999873 3 589999999999999999999999987 6889999987652 2457899984 Q ss_pred ccccccChH-HHHHHHhhcccCCcEEEEEeC Q psy2408 164 ESIFHMNHS-AALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 164 ~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~ 193 (298) +.-+..+ .+|..+.+.++.||.|.++.. T Consensus 127 --lDPfGSp~pfldsA~~~v~~gGll~vTaT 155 (377) T PF02005_consen 127 --LDPFGSPAPFLDSALQAVKDGGLLCVTAT 155 (377) T ss_dssp --E--SS--HHHHHHHHHHEEEEEEEEEEE- T ss_pred --eCCCCCccHhHHHHHHHhhcCCEEEEecc Confidence 4445667 999999999999999999754 No 279 >KOG0822|consensus Probab=97.22 E-value=0.0021 Score=57.47 Aligned_cols=125 Identities=13% Similarity=0.095 Sum_probs=94.8 Q ss_pred CCCcHHHHHHHHHHHHHHhCCCCC---CCeEEEeCCCCCHHHHHHHHh---c--CCeEEEEeCCHHHHHHHHHHHHhcCC Q psy2408 65 SKDNFAQGSDKLSRIMINKTSITK---GQRFIDIGCGFGLSGIRLAKA---K--GCRVDGITISKFQQESAMKTAKAEGL 136 (298) Q Consensus 65 ~~~~~~~~~~~~~~~l~~~~~~~~---~~~vLDiGcG~G~~~~~l~~~---~--~~~v~~vD~s~~~l~~a~~~~~~~~~ 136 (298) +.-.+.++++.+...++++..-.. -..|+-+|+|-|.+.....+. . ..++++++-+|+++-..+. ..-.++ T Consensus 341 D~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W 419 (649) T KOG0822|consen 341 DPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECW 419 (649) T ss_pred cchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhh Confidence 455677788888888888864332 347788999999886655443 2 3689999999998887766 344456 Q ss_pred CCceEEEECCCCCCCCCCCCeeEEEecccccccChH----HHHHHHhhcccCCcEEEEE Q psy2408 137 LDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS----AALNEARRVLKSGSILTLT 191 (298) Q Consensus 137 ~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~----~~l~~~~r~LkpgG~l~i~ 191 (298) .++++++..|+..++.|.++.|++++ ..|..+.|. +.|..+.+.|||+|..+=. T Consensus 420 ~~~Vtii~~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649) T KOG0822|consen 420 DNRVTIISSDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649) T ss_pred cCeeEEEeccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCceEccc Confidence 78899999999999855689999875 455555554 9999999999999875543 No 280 >KOG2198|consensus Probab=97.22 E-value=0.0068 Score=52.05 Aligned_cols=114 Identities=17% Similarity=0.135 Sum_probs=80.1 Q ss_pred hCCCCCCCeEEEeCCCCCHHHHHHHHhc-C----CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC------ Q psy2408 83 KTSITKGQRFIDIGCGFGLSGIRLAKAK-G----CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP------ 151 (298) Q Consensus 83 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~----~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~------ 151 (298) .++++|+.+|||+++..|.-+..+.+.. . ..|++=|.++..+........... ..++.+...|+..+| T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~p~~~~~~ 228 (375) T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLFPNIYLKD 228 (375) T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-Ccceeeecccceecccccccc Confidence 3567899999999999999988887752 2 279999999988888877774332 234556666655443 Q ss_pred ---CCCCCeeEEEec------ccccc----------------cChH--HHHHHHhhcccCCcEEEEEeCCCCC Q psy2408 152 ---FDNDSFDGGWFF------ESIFH----------------MNHS--AALNEARRVLKSGSILTLTDLPLLS 197 (298) Q Consensus 152 ---~~~~~fD~V~~~------~~l~~----------------~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~ 197 (298) .....||-|++- .++.+ ++.. .+|++..++||+||.++-++-+..+ T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375) T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375) T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc Confidence 122468988861 11111 1122 7889999999999999998776544 No 281 >PRK09880 L-idonate 5-dehydrogenase; Provisional Probab=97.16 E-value=0.0029 Score=55.30 Aligned_cols=104 Identities=17% Similarity=0.188 Sum_probs=66.7 Q ss_pred HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCee Q psy2408 81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFD 158 (298) Q Consensus 81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 158 (298) +......++.+||-.|||. |..+..+++..|+ +|+++|.+++.++.+++. |...-+.....++.++....+.+| T Consensus 162 l~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~g~~D 237 (343) T PRK09880 162 AHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GADKLVNPQNDDLDHYKAEKGYFD 237 (343) T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCcEEecCCcccHHHHhccCCCCC Confidence 3444555789999999875 7777777877787 699999999988888653 321111111112222211123588 Q ss_pred EEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 159 GGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 159 ~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) +|+- ....+..+....++|++||++++... T Consensus 238 ~vid-----~~G~~~~~~~~~~~l~~~G~iv~~G~ 267 (343) T PRK09880 238 VSFE-----VSGHPSSINTCLEVTRAKGVMVQVGM 267 (343) T ss_pred EEEE-----CCCCHHHHHHHHHHhhcCCEEEEEcc Confidence 8753 33334567788899999999988754 No 282 >KOG2793|consensus Probab=97.13 E-value=0.006 Score=50.06 Aligned_cols=105 Identities=17% Similarity=0.094 Sum_probs=67.4 Q ss_pred CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHH--HHHHH--HHhcCCCCceEEEECCCCC---CCCCCCC-eeEE Q psy2408 89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQE--SAMKT--AKAEGLLDKVNFLHGDALN---LPFDNDS-FDGG 160 (298) Q Consensus 89 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~--~a~~~--~~~~~~~~~i~~~~~d~~~---~~~~~~~-fD~V 160 (298) ..+|||+|+|+|..++..+...++.|+..|+...... ..... .....+...+.+...+-.. ..+..+. +|+| T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248) T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248) T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE Confidence 4579999999998888888767889999887543322 22111 1111111233333332222 1111233 9999 Q ss_pred EecccccccChH-HHHHHHhhcccCCcEEEEEeC Q psy2408 161 WFFESIFHMNHS-AALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 161 ~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~ 193 (298) ++..++.+-... .++.-+...|..+|.+++... T Consensus 167 lasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248) T KOG2793|consen 167 LASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYP 200 (248) T ss_pred EEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEe Confidence 999999988888 888888889988886555433 No 283 >KOG2671|consensus Probab=97.11 E-value=0.0011 Score=56.04 Aligned_cols=116 Identities=25% Similarity=0.140 Sum_probs=84.8 Q ss_pred HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHH-------HHHHHHHhcCCCCc-eEEEECCCC Q psy2408 77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQE-------SAMKTAKAEGLLDK-VNFLHGDAL 148 (298) Q Consensus 77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~-------~a~~~~~~~~~~~~-i~~~~~d~~ 148 (298) .-.+.+...++||+-|+|--.|||.+....+. .|+.|.|.|++-.++. ..+.+++..|..++ +.++.+|.. T Consensus 197 Sli~AN~Amv~pGdivyDPFVGTGslLvsaa~-FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~s 275 (421) T KOG2671|consen 197 SLIMANQAMVKPGDIVYDPFVGTGSLLVSAAH-FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFS 275 (421) T ss_pred HHHHhhhhccCCCCEEecCccccCceeeehhh-hcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeeccc Confidence 33445555678999999999999999888887 8999999999988877 34566777774443 678889998 Q ss_pred CCCCC-CCCeeEEEec------------------------ccccccCh--------H--HHHHHHhhcccCCcEEEEEeC Q psy2408 149 NLPFD-NDSFDGGWFF------------------------ESIFHMNH--------S--AALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 149 ~~~~~-~~~fD~V~~~------------------------~~l~~~~~--------~--~~l~~~~r~LkpgG~l~i~~~ 193 (298) ..|+. ...||.|+|- ....|.+. . ..|.=..+.|..||++++--+ T Consensus 276 n~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421) T KOG2671|consen 276 NPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421) T ss_pred CcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC Confidence 87643 5689999981 11123332 1 566667788899999887544 No 284 >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. Probab=97.04 E-value=0.0013 Score=55.72 Aligned_cols=88 Identities=23% Similarity=0.230 Sum_probs=62.8 Q ss_pred HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--- Q psy2408 76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--- 151 (298) Q Consensus 76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--- 151 (298) +.+.+++.+.+.++..++|.--|.|+.+..+.+.. +++++|+|.++.+++.+++++... .+++.+++.++.++. T Consensus 8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l 85 (310) T PF01795_consen 8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYL 85 (310) T ss_dssp THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHH T ss_pred cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHH Confidence 35566777778888999999999999999999873 689999999999999998887644 468999999988762 Q ss_pred --C-CCCCeeEEEeccc Q psy2408 152 --F-DNDSFDGGWFFES 165 (298) Q Consensus 152 --~-~~~~fD~V~~~~~ 165 (298) . ...++|.|++-.. T Consensus 86 ~~~~~~~~~dgiL~DLG 102 (310) T PF01795_consen 86 KELNGINKVDGILFDLG 102 (310) T ss_dssp HHTTTTS-EEEEEEE-S T ss_pred HHccCCCccCEEEEccc Confidence 2 3357888886433 No 285 >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] Probab=97.01 E-value=0.016 Score=50.76 Aligned_cols=99 Identities=21% Similarity=0.184 Sum_probs=69.3 Q ss_pred CCCCeEEEeCCCC-CHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC-C----C-CCCC-CCe Q psy2408 87 TKGQRFIDIGCGF-GLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL-N----L-PFDN-DSF 157 (298) Q Consensus 87 ~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~-~----~-~~~~-~~f 157 (298) .++.+|+=+|||+ |.++..+++..| .+|+++|.++..++.|++.... ..+..... . . .... ..+ T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~-------~~~~~~~~~~~~~~~~~~t~g~g~ 239 (350) T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA-------DVVVNPSEDDAGAEILELTGGRGA 239 (350) T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC-------eEeecCccccHHHHHHHHhCCCCC Confidence 4445999999998 888888888766 5899999999999999885421 11111111 0 0 1112 369 Q ss_pred eEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCC Q psy2408 158 DGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLS 197 (298) Q Consensus 158 D~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 197 (298) |+|+=.. ..+.++..+.++++|+|.+++....... T Consensus 240 D~vie~~-----G~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350) T COG1063 240 DVVIEAV-----GSPPALDQALEALRPGGTVVVVGVYGGE 274 (350) T ss_pred CEEEECC-----CCHHHHHHHHHHhcCCCEEEEEeccCCc Confidence 9886433 3447889999999999999998766444 No 286 >KOG2918|consensus Probab=96.97 E-value=0.12 Score=43.47 Aligned_cols=175 Identities=13% Similarity=0.182 Sum_probs=97.8 Q ss_pred ceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHH Q psy2408 54 HMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK---GCRVDGITISKFQQESAMKT 130 (298) Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~~vD~s~~~l~~a~~~ 130 (298) .++.|||.. .-+.+..+..++... .....|+.+|||.-.+...|.... ...++=||.++.....+. . T Consensus 62 ~inRGy~~R-------~~aI~~~v~~Fl~~~--~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~-i 131 (335) T KOG2918|consen 62 EINRGYWAR-------TMAIRHAVRAFLEQT--DGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKIS-I 131 (335) T ss_pred eecchhhHH-------HHHHHHHHHHHHHhc--CCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHh-h Confidence 346778875 234556666666663 456799999999988887777653 246777777765555541 1 Q ss_pred HHhcCC---------------------CCceEEEECCCCCCC----------CCCCCeeEEEecccccccChH---HHHH Q psy2408 131 AKAEGL---------------------LDKVNFLHGDALNLP----------FDNDSFDGGWFFESIFHMNHS---AALN 176 (298) Q Consensus 131 ~~~~~~---------------------~~~i~~~~~d~~~~~----------~~~~~fD~V~~~~~l~~~~~~---~~l~ 176 (298) .....+ .++...+..|+.++. ...+-.-++++-.++.+++.. .+++ T Consensus 132 k~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~ 211 (335) T KOG2918|consen 132 KRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIK 211 (335) T ss_pred cccCchhhhhhccccccccccCcceeccCceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHH Confidence 111100 012233334444321 111233455566777778766 6666 Q ss_pred HHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhh-----cccCCCCcchHHHHHHhCCCcEEEEEeC Q psy2408 177 EARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKN-----IHSNFILVEHYPDLLNKSGFELIKIDDI 240 (298) Q Consensus 177 ~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 240 (298) .+.......+.+..-.+...+... ......+... ....+.+.+..+.-+.++||+-+...++ T Consensus 212 w~~~~F~~a~fv~YEQi~~~D~Fg--~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335) T KOG2918|consen 212 WAASKFENAHFVNYEQINPNDRFG--KVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335) T ss_pred HHHHhCCcccEEEEeccCCCChHH--HHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH Confidence 666666655554443333222221 2222222221 1234667888888999999998887663 No 287 >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. Probab=96.90 E-value=0.0004 Score=48.88 Aligned_cols=86 Identities=17% Similarity=0.209 Sum_probs=43.5 Q ss_pred CeeEEEeccccccc----ChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHH Q psy2408 156 SFDGGWFFESIFHM----NHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLN 228 (298) Q Consensus 156 ~fD~V~~~~~l~~~----~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 228 (298) .||+|+|..+.-++ .|. .+++.+++.|+|||.|++.--.+................ ...--+.++.+...|. T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n-~~~i~lrP~~F~~~L~ 79 (110) T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIREN-YKSIKLRPDQFEDYLL 79 (110) T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHH-HHH----GGGHHHHHT T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhH-HhceEEChHHHHHHHH Confidence 48999998887654 344 899999999999999999644432211100000111111 1111245667888887 Q ss_pred h--CCCcEEEEEeCCC Q psy2408 229 K--SGFELIKIDDITS 242 (298) Q Consensus 229 ~--~Gf~~~~~~~~~~ 242 (298) + .||...+...... T Consensus 80 ~~evGF~~~e~~~~~~ 95 (110) T PF06859_consen 80 EPEVGFSSVEELGVPE 95 (110) T ss_dssp STTT---EEEEE---- T ss_pred hcccceEEEEEcccCC Confidence 7 5999887554443 No 288 >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed Probab=96.88 E-value=0.012 Score=56.15 Aligned_cols=104 Identities=16% Similarity=0.114 Sum_probs=62.2 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHhc-------------CCeEEEEeCCH---HHHHHHH-----------HHHHh-----c Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKAK-------------GCRVDGITISK---FQQESAM-----------KTAKA-----E 134 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~~-------------~~~v~~vD~s~---~~l~~a~-----------~~~~~-----~ 134 (298) .+.-+|||+|-|+|.......+.. ..++++++..+ +.+..+. ..... . T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662) T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662) T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC Confidence 345799999999998766555322 24788999533 3333322 21111 1 Q ss_pred CC------CC--ceEEEECCCCCC-CCCCCCeeEEEeccccc-ccChH---HHHHHHhhcccCCcEEEE Q psy2408 135 GL------LD--KVNFLHGDALNL-PFDNDSFDGGWFFESIF-HMNHS---AALNEARRVLKSGSILTL 190 (298) Q Consensus 135 ~~------~~--~i~~~~~d~~~~-~~~~~~fD~V~~~~~l~-~~~~~---~~l~~~~r~LkpgG~l~i 190 (298) |+ .. ++++..+|+.+. +--...+|+++.-..-- .-++. .+++.+.++++|||.+.- T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662) T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662) T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE Confidence 11 01 344666787653 21125699998643221 22333 999999999999998764 No 289 >PRK11524 putative methyltransferase; Provisional Probab=96.88 E-value=0.0055 Score=52.07 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=49.6 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKA 133 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~ 133 (298) ..+.+.++.... .+|+.|||.-||+|..+....+ .+.+++|+|++++.++.|+.++.. T Consensus 195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~-lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284) T PRK11524 195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKA-SGRKFIGIEINSEYIKMGLRRLDV 252 (284) T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHh Confidence 567777777665 6899999999999999877666 799999999999999999999753 No 290 >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] Probab=96.77 E-value=0.022 Score=49.03 Aligned_cols=100 Identities=24% Similarity=0.263 Sum_probs=79.7 Q ss_pred CCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC-CCCeeEEEecccc Q psy2408 89 GQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD-NDSFDGGWFFESI 166 (298) Q Consensus 89 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~V~~~~~l 166 (298) +.+|||.=||+|.=++.++...+. +++.-|+|+..++.+++++..+.. .+...++.|+..+-.. ...||+|= + T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~ID----i 127 (380) T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVID----I 127 (380) T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEe----c Confidence 679999999999999999887665 999999999999999999987733 3466677777665222 36788872 4 Q ss_pred cccChH-HHHHHHhhcccCCcEEEEEeC Q psy2408 167 FHMNHS-AALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 167 ~~~~~~-~~l~~~~r~LkpgG~l~i~~~ 193 (298) .-+..| .++..+.+.++.+|.+.++.. T Consensus 128 DPFGSPaPFlDaA~~s~~~~G~l~vTAT 155 (380) T COG1867 128 DPFGSPAPFLDAALRSVRRGGLLCVTAT 155 (380) T ss_pred CCCCCCchHHHHHHHHhhcCCEEEEEec Confidence 445667 999999999999999999743 No 291 >KOG1596|consensus Probab=96.75 E-value=0.006 Score=49.12 Aligned_cols=117 Identities=15% Similarity=0.100 Sum_probs=77.2 Q ss_pred HHHHHHHHHH---HhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC Q psy2408 72 GSDKLSRIMI---NKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD 146 (298) Q Consensus 72 ~~~~~~~~l~---~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d 146 (298) ....++..|+ +.+.++|+.+||-+|+++|.....+.... ..-|++|+.|...-.....-+++. .||-.+.-| T Consensus 137 frSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiED 213 (317) T KOG1596|consen 137 FRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIED 213 (317) T ss_pred HHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeecc Confidence 4455555553 55678999999999999999988888863 457999999875433333222222 567778888 Q ss_pred CCCCC---CCCCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCC Q psy2408 147 ALNLP---FDNDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 147 ~~~~~---~~~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~ 194 (298) +.... +.-.-.|+|++- +- -++. .+.-++.-.||+||-++|+... T Consensus 214 ArhP~KYRmlVgmVDvIFaD-va--qpdq~RivaLNA~~FLk~gGhfvisika 263 (317) T KOG1596|consen 214 ARHPAKYRMLVGMVDVIFAD-VA--QPDQARIVALNAQYFLKNGGHFVISIKA 263 (317) T ss_pred CCCchheeeeeeeEEEEecc-CC--CchhhhhhhhhhhhhhccCCeEEEEEec Confidence 87631 112345666542 11 2333 5555788899999999987554 No 292 >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... Probab=96.72 E-value=0.0058 Score=49.85 Aligned_cols=55 Identities=25% Similarity=0.270 Sum_probs=41.9 Q ss_pred HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHH Q psy2408 73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMK 129 (298) Q Consensus 73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~ 129 (298) ...+.+.++.... .+|..|||.-||+|..+....+ .+.+.+|+|+++...+.|++ T Consensus 177 P~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~-l~R~~ig~E~~~~y~~~a~~ 231 (231) T PF01555_consen 177 PVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEE-LGRRYIGIEIDEEYCEIAKK 231 (231) T ss_dssp -HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHH-TT-EEEEEESSHHHHHHHHH T ss_pred CHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHH-cCCeEEEEeCCHHHHHHhcC Confidence 3566677776664 6789999999999999877766 79999999999999998864 No 293 >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T Probab=96.64 E-value=0.023 Score=50.58 Aligned_cols=108 Identities=24% Similarity=0.276 Sum_probs=71.5 Q ss_pred HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC-CCC-C-CC-CCC Q psy2408 82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD-ALN-L-PF-DND 155 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d-~~~-~-~~-~~~ 155 (298) ....+.++.+||.+|||. |..+..+++..+. +++++|.+++.++.+++.. +. ..+.....+ ... + .+ +.. T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~ 253 (386) T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGGR 253 (386) T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCC Confidence 455677889999999987 8888888887786 5999999999988887652 11 111111111 100 1 11 234 Q ss_pred CeeEEEecccc-----------c----ccChH-HHHHHHhhcccCCcEEEEEeC Q psy2408 156 SFDGGWFFESI-----------F----HMNHS-AALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 156 ~fD~V~~~~~l-----------~----~~~~~-~~l~~~~r~LkpgG~l~i~~~ 193 (298) .+|+|+-.-.- . -.+++ ..+.++.++++|+|++++... T Consensus 254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386) T cd08283 254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386) T ss_pred CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC Confidence 68988764211 1 11344 788999999999999988743 No 294 >PRK13699 putative methylase; Provisional Probab=96.57 E-value=0.014 Score=47.73 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=48.7 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAE 134 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~ 134 (298) ..+.+.++.... .+|..|||.-||+|..+....+ .+.+++|+|++++..+.+.+++... T Consensus 150 ~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~-~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227) T PRK13699 150 VTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQ-SGRRYIGIELLEQYHRAGQQRLAAV 208 (227) T ss_pred HHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHH Confidence 456666666544 5789999999999999877766 7899999999999999999998653 No 295 >COG1565 Uncharacterized conserved protein [Function unknown] Probab=96.56 E-value=0.019 Score=49.36 Aligned_cols=69 Identities=14% Similarity=0.070 Sum_probs=54.6 Q ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc---------CCeEEEEeCCHHHHHHHHHHHHhc Q psy2408 66 KDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK---------GCRVDGITISKFQQESAMKTAKAE 134 (298) Q Consensus 66 ~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---------~~~v~~vD~s~~~l~~a~~~~~~~ 134 (298) ...+++......-.+++.++.+....++|+|.|+|.++..+.+.. .+++..|++|++..+.=++.++.. T Consensus 55 s~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370) T COG1565 55 SQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370) T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc Confidence 445566666667777777777777899999999999998887642 479999999999988877777654 No 296 >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. Probab=96.45 E-value=0.051 Score=47.20 Aligned_cols=96 Identities=20% Similarity=0.248 Sum_probs=64.9 Q ss_pred HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEE Q psy2408 82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGG 160 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V 160 (298) ....+.++.+||-.|+|. |..+..+++..|+++++++.+++.++.+++. |.. .++ +..+. ..+.+|++ T Consensus 159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~----Ga~---~vi--~~~~~--~~~~~d~~ 227 (329) T TIGR02822 159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL----GAA---SAG--GAYDT--PPEPLDAA 227 (329) T ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh----CCc---eec--ccccc--CcccceEE Confidence 446678899999999864 6666677777788999999999887777654 332 111 11111 12457876 Q ss_pred EecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 161 WFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 161 ~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) +..... ...+....++|+++|++++... T Consensus 228 i~~~~~-----~~~~~~~~~~l~~~G~~v~~G~ 255 (329) T TIGR02822 228 ILFAPA-----GGLVPPALEALDRGGVLAVAGI 255 (329) T ss_pred EECCCc-----HHHHHHHHHhhCCCcEEEEEec Confidence 543221 2567788899999999988654 No 297 >KOG1253|consensus Probab=96.43 E-value=0.0032 Score=55.87 Aligned_cols=103 Identities=24% Similarity=0.259 Sum_probs=83.9 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC----CCCCCCeeEE Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKAK-G-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL----PFDNDSFDGG 160 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~~-~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~V 160 (298) .++.+|||.=|++|.-++..+... + .++++-|.++..+...+++++.+++.+.+.....|+..+ +.....||+| T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525) T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525) T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE Confidence 456799999999999999999875 3 489999999999999999999888877788888887665 2335789988 Q ss_pred EecccccccChH-HHHHHHhhcccCCcEEEEEeC Q psy2408 161 WFFESIFHMNHS-AALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 161 ~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~ 193 (298) = |.-...+ .+|..+.+.++.||.|+++.. T Consensus 188 D----LDPyGs~s~FLDsAvqav~~gGLL~vT~T 217 (525) T KOG1253|consen 188 D----LDPYGSPSPFLDSAVQAVRDGGLLCVTCT 217 (525) T ss_pred e----cCCCCCccHHHHHHHHHhhcCCEEEEEec Confidence 4 2333445 999999999999999999754 No 298 >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known. Probab=96.37 E-value=0.09 Score=40.74 Aligned_cols=132 Identities=17% Similarity=0.093 Sum_probs=79.5 Q ss_pred eCCCCCHHHHHHHHhcC--Ce--EEEEeCCHHHHHHHH---HHHHhcCCCCceEEEECCCCCCC----CCCCCeeEEEec Q psy2408 95 IGCGFGLSGIRLAKAKG--CR--VDGITISKFQQESAM---KTAKAEGLLDKVNFLHGDALNLP----FDNDSFDGGWFF 163 (298) Q Consensus 95 iGcG~G~~~~~l~~~~~--~~--v~~vD~s~~~l~~a~---~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~~ 163 (298) ||=|.=.++..|++..+ .. .|..|..++..+... ..+....-.+-.-....|+.++. ...+.||.|+.+ T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166) T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166) T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe Confidence 55566667777777643 34 444554444433332 22222211111223455777762 246889999976 Q ss_pred ccccc---------c---ChH--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHh Q psy2408 164 ESIFH---------M---NHS--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNK 229 (298) Q Consensus 164 ~~l~~---------~---~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 229 (298) +.--- + ... .+++.+..+|+++|.+.|+-....+ ++.-.++.+.++ T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p--------------------y~~W~i~~lA~~ 142 (166) T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP--------------------YDSWNIEELAAE 142 (166) T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC--------------------CccccHHHHHHh Confidence 54322 1 012 8899999999999999997443211 233467788899 Q ss_pred CCCcEEEEEeCCCCccc Q psy2408 230 SGFELIKIDDITSHVMP 246 (298) Q Consensus 230 ~Gf~~~~~~~~~~~~~~ 246 (298) +||.+++...+....++ T Consensus 143 ~gl~l~~~~~F~~~~yp 159 (166) T PF10354_consen 143 AGLVLVRKVPFDPSDYP 159 (166) T ss_pred cCCEEEEEecCCHHHCC Confidence 99999988877766554 No 299 >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. Probab=96.37 E-value=0.014 Score=53.31 Aligned_cols=96 Identities=22% Similarity=0.226 Sum_probs=67.4 Q ss_pred CCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-----------C--C- Q psy2408 87 TKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-----------L--P- 151 (298) Q Consensus 87 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-----------~--~- 151 (298) .++.+||-+|||. |..+..++...|+.|+++|.++..++.++.. + ..++..|..+ + + T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l----G----a~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511) T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM----G----AEFLELDFKEEGGSGDGYAKVMSEEF 233 (511) T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEeccccccccccccceeecCHHH Confidence 3568999999997 7778888887899999999999987777652 2 2333333211 0 0 Q ss_pred -------CC--CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEE Q psy2408 152 -------FD--NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTL 190 (298) Q Consensus 152 -------~~--~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i 190 (298) ++ -..+|+|+..-.+.--+.| -+.++..+.+|||+.++- T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511) T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511) T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE Confidence 11 2469999877656555555 577888999999998663 No 300 >KOG2920|consensus Probab=96.26 E-value=0.0041 Score=51.55 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=64.3 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHH-------HH----HHhcCCCCceEEEECCCCCCCC-CC Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAM-------KT----AKAEGLLDKVNFLHGDALNLPF-DN 154 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~-------~~----~~~~~~~~~i~~~~~d~~~~~~-~~ 154 (298) -.+++|||+|||+|...+.........+...|.|...+..-. -. ..+.. .-..+.+.+..+..+ .. T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~--~~~~i~~s~l~dg~~~~t 192 (282) T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENH--KVDEILNSLLSDGVFNHT 192 (282) T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcc--cceeccccccccchhhhc Confidence 468899999999999988888743478888888877662110 00 01110 112223331112111 12 Q ss_pred C--CeeEEEecccccccChH-HH-HHHHhhcccCCcEEEEE Q psy2408 155 D--SFDGGWFFESIFHMNHS-AA-LNEARRVLKSGSILTLT 191 (298) Q Consensus 155 ~--~fD~V~~~~~l~~~~~~-~~-l~~~~r~LkpgG~l~i~ 191 (298) + .||+|.++.++...... .. .......+++.|.++.. T Consensus 193 ~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282) T KOG2920|consen 193 ERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282) T ss_pred cccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh Confidence 3 79999999999887777 44 55666677888877664 No 301 >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at Probab=96.25 E-value=0.022 Score=49.57 Aligned_cols=101 Identities=20% Similarity=0.192 Sum_probs=65.4 Q ss_pred HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC---CC-C-CC Q psy2408 81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL---NL-P-FD 153 (298) Q Consensus 81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~---~~-~-~~ 153 (298) +....+.++.+||=+|+|. |..+..+++..|++ |++++.+++..+.+++. |.. .++...-. .+ . .. T Consensus 156 l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~---~~i~~~~~~~~~~~~~~~ 228 (339) T cd08239 156 LRRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GAD---FVINSGQDDVQEIRELTS 228 (339) T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC---EEEcCCcchHHHHHHHhC Confidence 3556677899999998875 66667777777888 99999999888777543 321 12211100 11 0 12 Q ss_pred CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) ...+|+|+-. ......+....+.|+++|++++... T Consensus 229 ~~~~d~vid~-----~g~~~~~~~~~~~l~~~G~~v~~g~ 263 (339) T cd08239 229 GAGADVAIEC-----SGNTAARRLALEAVRPWGRLVLVGE 263 (339) T ss_pred CCCCCEEEEC-----CCCHHHHHHHHHHhhcCCEEEEEcC Confidence 2468988632 2233556677889999999987654 No 302 >cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai Probab=96.22 E-value=0.04 Score=48.37 Aligned_cols=98 Identities=18% Similarity=0.124 Sum_probs=62.1 Q ss_pred CCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeC---CHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEE Q psy2408 86 ITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITI---SKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGW 161 (298) Q Consensus 86 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~---s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~ 161 (298) ..++.+||-+|+|. |.++..+++..|+++++++. ++..++.+++. |.. .+.....+..+.. ..+.+|+|+ T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~----Ga~-~v~~~~~~~~~~~-~~~~~d~vi 243 (355) T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEEL----GAT-YVNSSKTPVAEVK-LVGEFDLII 243 (355) T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc----CCE-EecCCccchhhhh-hcCCCCEEE Confidence 46788999999875 77777788877889999987 66666666532 321 1111011111100 124688876 Q ss_pred ecccccccChHHHHHHHhhcccCCcEEEEEeCC Q psy2408 162 FFESIFHMNHSAALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 162 ~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 194 (298) -. ...+..+....++|+++|++++.... T Consensus 244 d~-----~g~~~~~~~~~~~l~~~G~~v~~G~~ 271 (355) T cd08230 244 EA-----TGVPPLAFEALPALAPNGVVILFGVP 271 (355) T ss_pred EC-----cCCHHHHHHHHHHccCCcEEEEEecC Confidence 43 23335778888999999998876543 No 303 >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio Probab=96.21 E-value=0.1 Score=45.20 Aligned_cols=100 Identities=23% Similarity=0.302 Sum_probs=66.6 Q ss_pred HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----CCCCC Q psy2408 82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----PFDND 155 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~ 155 (298) ....+.++.+||..|+|. |..+..+++..|.+|++++.++...+.+++. ++. .++...-... ....+ T Consensus 159 ~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~ 231 (338) T cd08254 159 RAGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKEL----GAD---EVLNSLDDSPKDKKAAGLGG 231 (338) T ss_pred hccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh----CCC---EEEcCCCcCHHHHHHHhcCC Confidence 334467888999988874 7788888887889999999999888777542 321 1111110110 12345 Q ss_pred CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) .+|+|+.+.. ....+.++.+.|+++|.++.... T Consensus 232 ~~D~vid~~g-----~~~~~~~~~~~l~~~G~~v~~g~ 264 (338) T cd08254 232 GFDVIFDFVG-----TQPTFEDAQKAVKPGGRIVVVGL 264 (338) T ss_pred CceEEEECCC-----CHHHHHHHHHHhhcCCEEEEECC Confidence 7898864321 22577888999999999887644 No 304 >KOG1562|consensus Probab=96.19 E-value=0.017 Score=48.08 Aligned_cols=108 Identities=18% Similarity=0.052 Sum_probs=78.2 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc--CC-CCceEEEECCCCCC--CCCCCCeeEE Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAE--GL-LDKVNFLHGDALNL--PFDNDSFDGG 160 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~--~~-~~~i~~~~~d~~~~--~~~~~~fD~V 160 (298) ...++||-||.|.|......+++. -..+..+|++...++..+..++.. +. .+++.+..+|...+ ..+.++||+| T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337) T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337) T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE Confidence 556799999999999998888863 237899999999988888876632 21 24688888887654 3446899999 Q ss_pred EecccccccCh--H---HHHHHHhhcccCCcEEEEEeCC Q psy2408 161 WFFESIFHMNH--S---AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 161 ~~~~~l~~~~~--~---~~l~~~~r~LkpgG~l~i~~~~ 194 (298) +.-..=--.+. . .++.-+.+.||++|+++...-+ T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec 238 (337) T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC 238 (337) T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecce Confidence 85322111121 1 7788899999999998886533 No 305 >KOG0022|consensus Probab=96.16 E-value=0.12 Score=43.61 Aligned_cols=104 Identities=19% Similarity=0.243 Sum_probs=69.9 Q ss_pred HHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC-CCCC-C----- Q psy2408 80 MINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHG-DALN-L----- 150 (298) Q Consensus 80 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~-d~~~-~----- 150 (298) ...-.++.||.+|.-+|+|. |.....-++..|+ +++|+|++++-.+.|++.-. .++++. |..+ + T Consensus 184 a~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGa-------Te~iNp~d~~~~i~evi~ 256 (375) T KOG0022|consen 184 AWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGA-------TEFINPKDLKKPIQEVII 256 (375) T ss_pred hhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCc-------ceecChhhccccHHHHHH Confidence 34556678999999999997 5555555565554 89999999999999887622 223322 3333 0 Q ss_pred CCCCCCeeEEEecccccccChHHHHHHHhhcccCC-cEEEEEeCCC Q psy2408 151 PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSG-SILTLTDLPL 195 (298) Q Consensus 151 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~Lkpg-G~l~i~~~~~ 195 (298) .+.++.+|.- ++.+.+...|+++....+.| |.-++..... T Consensus 257 EmTdgGvDys-----fEc~G~~~~m~~al~s~h~GwG~sv~iGv~~ 297 (375) T KOG0022|consen 257 EMTDGGVDYS-----FECIGNVSTMRAALESCHKGWGKSVVIGVAA 297 (375) T ss_pred HHhcCCceEE-----EEecCCHHHHHHHHHHhhcCCCeEEEEEecC Confidence 1234667754 45556667888888888888 8877665543 No 306 >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. Probab=96.14 E-value=0.03 Score=49.22 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=65.9 Q ss_pred HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CC Q psy2408 81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PF 152 (298) Q Consensus 81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~ 152 (298) .....+.++.+||-.|||. |..+..+++..|+ +|+++|.++...+.+++. |.. .++...-.+. .. T Consensus 169 ~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~i~~~~ 241 (358) T TIGR03451 169 VNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----GAT---HTVNSSGTDPVEAIRALT 241 (358) T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc---eEEcCCCcCHHHHHHHHh Confidence 3445667899999999875 6777777887787 499999999888887543 321 1222111110 01 Q ss_pred CCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 153 ~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) ....+|+|+- ....+..+....+.++++|++++... T Consensus 242 ~~~g~d~vid-----~~g~~~~~~~~~~~~~~~G~iv~~G~ 277 (358) T TIGR03451 242 GGFGADVVID-----AVGRPETYKQAFYARDLAGTVVLVGV 277 (358) T ss_pred CCCCCCEEEE-----CCCCHHHHHHHHHHhccCCEEEEECC Confidence 2235888863 23334566777889999999988654 No 307 >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function. Probab=96.14 E-value=0.012 Score=49.58 Aligned_cols=105 Identities=23% Similarity=0.249 Sum_probs=71.5 Q ss_pred CeEEEeCCCCCHHHHHHHHhc---------------------CCeEEEEeCCHHH--HHHHHHHHHhc------------ Q psy2408 90 QRFIDIGCGFGLSGIRLAKAK---------------------GCRVDGITISKFQ--QESAMKTAKAE------------ 134 (298) Q Consensus 90 ~~vLDiGcG~G~~~~~l~~~~---------------------~~~v~~vD~s~~~--l~~a~~~~~~~------------ 134 (298) .+||.||.|.|.=...++... ...++.||+.+.. +......+... T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315) T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315) T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc Confidence 699999999986555554322 1389999997643 44444444333 Q ss_pred -CC-C--CceEEEECCCCCCCCCC-------CCeeEEEeccccccc-----ChH-HHHHHHhhcccCCcEEEEEeCC Q psy2408 135 -GL-L--DKVNFLHGDALNLPFDN-------DSFDGGWFFESIFHM-----NHS-AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 135 -~~-~--~~i~~~~~d~~~~~~~~-------~~fD~V~~~~~l~~~-----~~~-~~l~~~~r~LkpgG~l~i~~~~ 194 (298) .. + -++.|.+.|+..+..++ ...|+|...+++.-+ +.. ++|.++...++||..|+|++.+ T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315) T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315) T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC Confidence 00 1 15789999998874321 257888877776432 233 9999999999999999998765 No 308 >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species. Probab=96.12 E-value=0.003 Score=47.67 Aligned_cols=130 Identities=18% Similarity=0.155 Sum_probs=76.3 Q ss_pred CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCce-EEEECCCCC-CCCCCCCeeEEEecccc Q psy2408 89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKV-NFLHGDALN-LPFDNDSFDGGWFFESI 166 (298) Q Consensus 89 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i-~~~~~d~~~-~~~~~~~fD~V~~~~~l 166 (298) +++++-+|+..-+.-....+...+++..|+.++--++. .+. +++ ++...|+.+ +.--.++||.+.+.+++ T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~---~~~-----dr~ssi~p~df~~~~~~y~~~fD~~as~~si 73 (177) T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQE---EFR-----DRLSSILPVDFAKNWQKYAGSFDFAASFSSI 73 (177) T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCc---ccc-----cccccccHHHHHHHHHHhhccchhhheechh Confidence 56888999987666444444223478888876411110 000 111 112222221 11124789999999999 Q ss_pred cccC--------hH----HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcE Q psy2408 167 FHMN--------HS----AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFEL 234 (298) Q Consensus 167 ~~~~--------~~----~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 234 (298) +|+. +| ..+.++.++|||||.|++..+.-.+... +...+.+....+..++ .||+. T Consensus 74 Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~-----------fNahRiYg~~rL~mm~--~gfe~ 140 (177) T PF03269_consen 74 EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQ-----------FNAHRIYGPIRLAMMF--YGFEW 140 (177) T ss_pred ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceE-----------EecceeecHhHHHHHh--CCcEE Confidence 9974 22 8999999999999999998776443222 1122334444455444 58888 Q ss_pred EEEEe Q psy2408 235 IKIDD 239 (298) Q Consensus 235 ~~~~~ 239 (298) +.... T Consensus 141 i~tfs 145 (177) T PF03269_consen 141 IDTFS 145 (177) T ss_pred Eeeec Confidence 77543 No 309 >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd Probab=96.10 E-value=0.027 Score=49.82 Aligned_cols=101 Identities=21% Similarity=0.263 Sum_probs=66.0 Q ss_pred HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----CCC Q psy2408 81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----PFD 153 (298) Q Consensus 81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~ 153 (298) .....+.++.+||=.|+|. |..+..+++..|+ +|+++|.++..++.+++. |.. .++..+-.++ ... T Consensus 184 ~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~i~~~~ 256 (371) T cd08281 184 VNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----GAT---ATVNAGDPNAVEQVRELT 256 (371) T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----CCc---eEeCCCchhHHHHHHHHh Confidence 4556678899999999875 6677777777788 699999999988877643 321 1222111111 011 Q ss_pred CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) .+.+|+|+-. ......+....+.|+++|++++... T Consensus 257 ~~g~d~vid~-----~G~~~~~~~~~~~l~~~G~iv~~G~ 291 (371) T cd08281 257 GGGVDYAFEM-----AGSVPALETAYEITRRGGTTVTAGL 291 (371) T ss_pred CCCCCEEEEC-----CCChHHHHHHHHHHhcCCEEEEEcc Confidence 2368888632 2233567778889999999887644 No 310 >PHA01634 hypothetical protein Probab=96.08 E-value=0.052 Score=39.34 Aligned_cols=47 Identities=9% Similarity=-0.060 Sum_probs=40.5 Q ss_pred CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAE 134 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~ 134 (298) .+.+|+|||.+-|..+++++.....+|+++++++...+..++..+.. T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156) T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156) T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh Confidence 57899999999999999998853458999999999999998877644 No 311 >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD:alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A .... Probab=96.02 E-value=0.016 Score=42.76 Aligned_cols=86 Identities=23% Similarity=0.233 Sum_probs=60.7 Q ss_pred CCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----C-CCCCCeeEEEecccccccCh Q psy2408 98 GFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----P-FDNDSFDGGWFFESIFHMNH 171 (298) Q Consensus 98 G~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~~~fD~V~~~~~l~~~~~ 171 (298) |.|..+..+++..|++|+++|.++..++.+++. |. ..++..+-.++ . .+...+|+|+-+ ... T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga---~~~~~~~~~~~~~~i~~~~~~~~~d~vid~-----~g~ 68 (130) T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GA---DHVIDYSDDDFVEQIRELTGGRGVDVVIDC-----VGS 68 (130) T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TE---SEEEETTTSSHHHHHHHHTTTSSEEEEEES-----SSS T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----cc---cccccccccccccccccccccccceEEEEe-----cCc Confidence 347788888888899999999999988888764 21 22333332221 1 233579998643 334 Q ss_pred HHHHHHHhhcccCCcEEEEEeCCC Q psy2408 172 SAALNEARRVLKSGSILTLTDLPL 195 (298) Q Consensus 172 ~~~l~~~~r~LkpgG~l~i~~~~~ 195 (298) ...++....+|+|+|++++..... T Consensus 69 ~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130) T PF00107_consen 69 GDTLQEAIKLLRPGGRIVVVGVYG 92 (130) T ss_dssp HHHHHHHHHHEEEEEEEEEESSTS T ss_pred HHHHHHHHHHhccCCEEEEEEccC Confidence 578899999999999999987664 No 312 >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B. Probab=95.86 E-value=0.025 Score=47.16 Aligned_cols=77 Identities=17% Similarity=0.135 Sum_probs=49.9 Q ss_pred CCeEEEeCCCCCHHHHHHHHhc---------CCeEEEEeCCHHHHHHHHHHHHhcC-----CCCceEEEECCCCCCCCCC Q psy2408 89 GQRFIDIGCGFGLSGIRLAKAK---------GCRVDGITISKFQQESAMKTAKAEG-----LLDKVNFLHGDALNLPFDN 154 (298) Q Consensus 89 ~~~vLDiGcG~G~~~~~l~~~~---------~~~v~~vD~s~~~l~~a~~~~~~~~-----~~~~i~~~~~d~~~~~~~~ 154 (298) ..+|+|+|+|+|.++..+.+.. ..+++.||+|+.+.+.-++++.... ...++.. ..++.+.| T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252) T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252) T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS---- T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc--- Confidence 4799999999999999988752 2589999999999888888765421 2223444 23333333 Q ss_pred CCeeEEEecccccccC Q psy2408 155 DSFDGGWFFESIFHMN 170 (298) Q Consensus 155 ~~fD~V~~~~~l~~~~ 170 (298) ..-+|++++++..+| T Consensus 95 -~~~~iiaNE~~DAlP 109 (252) T PF02636_consen 95 -FPGFIIANELFDALP 109 (252) T ss_dssp -CCEEEEEESSGGGS- T ss_pred -CCEEEEEeeehhcCc Confidence 345677777776665 No 313 >KOG2539|consensus Probab=95.79 E-value=0.029 Score=49.75 Aligned_cols=113 Identities=12% Similarity=0.089 Sum_probs=72.0 Q ss_pred CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC--CCCC-CCCeeEEE Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN--LPFD-NDSFDGGW 161 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~-~~~fD~V~ 161 (298) .++.++|+|+|.|.-.-.+... ....++.||.|..|+...........-...+.+...-+.. +|.+ .+.||+|+ T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491) T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491) T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE Confidence 4568999999976543333321 2457999999999999988877651100111111101111 2332 45699999 Q ss_pred ecccccccChH----HHHHHHh-hcccCCcEEEEEeCCCCCCCC Q psy2408 162 FFESIFHMNHS----AALNEAR-RVLKSGSILTLTDLPLLSVSK 200 (298) Q Consensus 162 ~~~~l~~~~~~----~~l~~~~-r~LkpgG~l~i~~~~~~~~~~ 200 (298) +.+.++++.+. ...++++ +..++|+.+++.+........ T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g~e 323 (491) T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMGLE 323 (491) T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccchh Confidence 99999999876 4445544 567899999998877555433 No 314 >PTZ00357 methyltransferase; Provisional Probab=95.72 E-value=0.1 Score=48.68 Aligned_cols=97 Identities=13% Similarity=0.036 Sum_probs=66.2 Q ss_pred CeEEEeCCCCCHHHHHHHHh---c--CCeEEEEeCCHHHHHHHHHHH-HhcCC-------CCceEEEECCCCCCCCCC-- Q psy2408 90 QRFIDIGCGFGLSGIRLAKA---K--GCRVDGITISKFQQESAMKTA-KAEGL-------LDKVNFLHGDALNLPFDN-- 154 (298) Q Consensus 90 ~~vLDiGcG~G~~~~~l~~~---~--~~~v~~vD~s~~~l~~a~~~~-~~~~~-------~~~i~~~~~d~~~~~~~~-- 154 (298) ..|+-+|+|-|.+.....+. . ..++++|+-++..+.....+. ....+ .++++++..|+..+..+. T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072) T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072) T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc Confidence 36899999999886665543 2 358999999966544443332 22233 245899999999984321 Q ss_pred ---------CCeeEEEecccccccChH----HHHHHHhhcccC----CcE Q psy2408 155 ---------DSFDGGWFFESIFHMNHS----AALNEARRVLKS----GSI 187 (298) Q Consensus 155 ---------~~fD~V~~~~~l~~~~~~----~~l~~~~r~Lkp----gG~ 187 (298) +++|+||+ +.|-.+.|. +.|..+.+.||+ +|. T Consensus 782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072) T PTZ00357 782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072) T ss_pred ccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc Confidence 36999886 455555554 888888888876 675 No 315 >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( Probab=95.72 E-value=0.14 Score=44.70 Aligned_cols=96 Identities=13% Similarity=0.088 Sum_probs=61.0 Q ss_pred CCCCCCCeEEEeCCCC-CHHHHHHHHh-c-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEE Q psy2408 84 TSITKGQRFIDIGCGF-GLSGIRLAKA-K-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGG 160 (298) Q Consensus 84 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V 160 (298) ..+.++.+||-+|||. |.++..+++. . +.+|+++|.++..++.++. .+. . .. .+ ++. ....+|+| T Consensus 159 ~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~-~~-~~--~~~-~~~g~d~v 226 (341) T cd08237 159 IAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---T-YL-ID--DIP-EDLAVDHA 226 (341) T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---e-ee-hh--hhh-hccCCcEE Confidence 3457899999999875 6666666664 4 4689999999988887764 111 1 11 11 111 11247887 Q ss_pred EecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 161 WFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 161 ~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) +-.-. .-..+..+....++|+++|++++... T Consensus 227 iD~~G--~~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341) T cd08237 227 FECVG--GRGSQSAINQIIDYIRPQGTIGLMGV 257 (341) T ss_pred EECCC--CCccHHHHHHHHHhCcCCcEEEEEee Confidence 63221 10123678888999999999987654 No 316 >KOG3924|consensus Probab=95.71 E-value=0.082 Score=45.95 Aligned_cols=126 Identities=17% Similarity=0.190 Sum_probs=81.1 Q ss_pred HHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHH---HH----HHHhcCC-CCce Q psy2408 70 AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESA---MK----TAKAEGL-LDKV 140 (298) Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a---~~----~~~~~~~-~~~i 140 (298) ++.+.+....+.+.+.+.+++...|+|+|.|.....++...++ .-.|+++...--+.+ .+ ..+-.|. +..+ T Consensus 174 GE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~ 253 (419) T KOG3924|consen 174 GETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKI 253 (419) T ss_pred hhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCce Confidence 3445666777888999999999999999999999988885443 455666543222222 22 2222232 3457 Q ss_pred EEEECCCCCCCC---CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCC Q psy2408 141 NFLHGDALNLPF---DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLL 196 (298) Q Consensus 141 ~~~~~d~~~~~~---~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~ 196 (298) ..+++++..... -....++|+++.+.. -++. -=+.++..-+++|-+++-...-.. T Consensus 254 ~~i~gsf~~~~~v~eI~~eatvi~vNN~~F-dp~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419) T KOG3924|consen 254 ETIHGSFLDPKRVTEIQTEATVIFVNNVAF-DPELKLRSKEILQKCKDGTRIISSKPLVP 312 (419) T ss_pred eecccccCCHHHHHHHhhcceEEEEecccC-CHHHHHhhHHHHhhCCCcceEeccccccc Confidence 788888766321 124578888776653 2233 444488888899999877665544 No 317 >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity Probab=95.70 E-value=0.031 Score=39.27 Aligned_cols=31 Identities=42% Similarity=0.565 Sum_probs=26.2 Q ss_pred CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeC Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITI 119 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~ 119 (298) +.....|||||.|.+...|.+ -|..-.|+|. T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~-EGy~G~GiD~ 88 (112) T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNS-EGYPGWGIDA 88 (112) T ss_pred CCCceEEccCCchHHHHHHHh-CCCCcccccc Confidence 455899999999999888877 5778889987 No 318 >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Probab=95.69 E-value=0.035 Score=46.98 Aligned_cols=101 Identities=21% Similarity=0.217 Sum_probs=64.8 Q ss_pred HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC-CCCC-C-C-CCC Q psy2408 81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHG-DALN-L-P-FDN 154 (298) Q Consensus 81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~-d~~~-~-~-~~~ 154 (298) +......++.+||-+|+|. |..+..+++..|++ |+++|.++..++.+++. +.. .++.. +... + . ... T Consensus 113 l~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~~~~~~ 185 (280) T TIGR03366 113 LEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GAT---ALAEPEVLAERQGGLQNG 185 (280) T ss_pred HHhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCc---EecCchhhHHHHHHHhCC Confidence 3444556889999999875 66777777767876 99999999888777653 321 11111 1000 0 0 112 Q ss_pred CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) ..+|+|+- ....+..+..+.+.|+|+|++++... T Consensus 186 ~g~d~vid-----~~G~~~~~~~~~~~l~~~G~iv~~G~ 219 (280) T TIGR03366 186 RGVDVALE-----FSGATAAVRACLESLDVGGTAVLAGS 219 (280) T ss_pred CCCCEEEE-----CCCChHHHHHHHHHhcCCCEEEEecc Confidence 45888753 23334677788899999999987654 No 319 >KOG2078|consensus Probab=95.64 E-value=0.011 Score=51.54 Aligned_cols=62 Identities=23% Similarity=0.271 Sum_probs=54.7 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCc-eEEEECCCCC Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDK-VNFLHGDALN 149 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~-i~~~~~d~~~ 149 (298) ++|..|-|+-||.|.++..++. -+++|++-|+++++++..+..++.+.+.+. +..++.|+.. T Consensus 248 k~gevv~D~FaGvGPfa~Pa~k-K~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495) T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAK-KGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495) T ss_pred CCcchhhhhhcCcCccccchhh-cCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH Confidence 6899999999999999999998 479999999999999999999987777655 8888887654 No 320 >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. Probab=95.62 E-value=0.039 Score=48.65 Aligned_cols=54 Identities=13% Similarity=0.044 Sum_probs=43.3 Q ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH Q psy2408 78 RIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAK 132 (298) Q Consensus 78 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~ 132 (298) +...+.+.+.|+++||-|.+|......++.. .+.+|++||+|+.++...+-+.. T Consensus 25 ~vD~~aL~i~~~d~vl~ItSaG~N~L~yL~~-~P~~I~aVDlNp~Q~aLleLKlA 78 (380) T PF11899_consen 25 RVDMEALNIGPDDRVLTITSAGCNALDYLLA-GPKRIHAVDLNPAQNALLELKLA 78 (380) T ss_pred HHHHHHhCCCCCCeEEEEccCCchHHHHHhc-CCceEEEEeCCHHHHHHHHHHHH Confidence 3456677889999999999887777767666 56899999999999888876654 No 321 >KOG1099|consensus Probab=95.61 E-value=0.025 Score=45.31 Aligned_cols=94 Identities=20% Similarity=0.228 Sum_probs=66.3 Q ss_pred CCeEEEeCCCCCHHHHHHHHhc-C------C---eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC------- Q psy2408 89 GQRFIDIGCGFGLSGIRLAKAK-G------C---RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP------- 151 (298) Q Consensus 89 ~~~vLDiGcG~G~~~~~l~~~~-~------~---~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~------- 151 (298) -.+++|+....|.++..+.++. . . .+++||+.+- ..+ +.+.-+++|++... T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI-~GV~qlq~DIT~~stae~Ii~ 109 (294) T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------API-EGVIQLQGDITSASTAEAIIE 109 (294) T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------Ccc-CceEEeecccCCHhHHHHHHH Confidence 3589999999999999998862 1 2 3999998541 122 23677889988742 Q ss_pred -CCCCCeeEEEeccc-----ccccCh----H---HHHHHHhhcccCCcEEEEEeCC Q psy2408 152 -FDNDSFDGGWFFES-----IFHMNH----S---AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 152 -~~~~~fD~V~~~~~-----l~~~~~----~---~~l~~~~r~LkpgG~l~i~~~~ 194 (298) |..++.|+|+|-++ +|.+.. . .+|.-...+|+|||.++.-.+- T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifR 165 (294) T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFR 165 (294) T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhc Confidence 55678999998543 333332 2 6777788999999998875443 No 322 >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro Probab=95.61 E-value=0.099 Score=43.49 Aligned_cols=97 Identities=24% Similarity=0.209 Sum_probs=62.5 Q ss_pred CCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----CCCCCCeeE Q psy2408 86 ITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----PFDNDSFDG 159 (298) Q Consensus 86 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~fD~ 159 (298) +.++.+||..|+|+ |..+..+++..|.++++++.++...+.++.. +.. .++...-... ....+.+|+ T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271) T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GAD---HVIDYKEEDLEEELRLTGGGGADV 204 (271) T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCc---eeccCCcCCHHHHHHHhcCCCCCE Confidence 37889999999986 6666777776789999999998877776543 211 1111111111 012357999 Q ss_pred EEecccccccChHHHHHHHhhcccCCcEEEEEeCC Q psy2408 160 GWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 160 V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 194 (298) |+... .....+..+.+.|+++|.++..... T Consensus 205 vi~~~-----~~~~~~~~~~~~l~~~G~~v~~~~~ 234 (271) T cd05188 205 VIDAV-----GGPETLAQALRLLRPGGRIVVVGGT 234 (271) T ss_pred EEECC-----CCHHHHHHHHHhcccCCEEEEEccC Confidence 87532 2224566778889999998876443 No 323 >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. Probab=95.50 E-value=0.078 Score=43.76 Aligned_cols=103 Identities=19% Similarity=0.126 Sum_probs=61.0 Q ss_pred CeEEEeCCCCCHHHHHHHHh---c---CCeEEEEeCCH--------------------------HHHHHHHHHHHhcCC- Q psy2408 90 QRFIDIGCGFGLSGIRLAKA---K---GCRVDGITISK--------------------------FQQESAMKTAKAEGL- 136 (298) Q Consensus 90 ~~vLDiGcG~G~~~~~l~~~---~---~~~v~~vD~s~--------------------------~~l~~a~~~~~~~~~- 136 (298) ..|+|+||-.|..+..++.. . +.++.++|.-+ ..++..++++...++ T Consensus 76 GdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl~ 155 (248) T PF05711_consen 76 GDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGLL 155 (248) T ss_dssp SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTTS T ss_pred eEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCCC Confidence 48999999999877665432 2 35788988511 134445555555443 Q ss_pred CCceEEEECCCCCC-C-CCCCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCC Q psy2408 137 LDKVNFLHGDALNL-P-FDNDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPL 195 (298) Q Consensus 137 ~~~i~~~~~d~~~~-~-~~~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~ 195 (298) ++++.++.+.+.+. | .+.+.+-++.+-. -+-++ ..|..++..|.|||.+++.++.. T Consensus 156 ~~~v~~vkG~F~dTLp~~p~~~IAll~lD~---DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248) T PF05711_consen 156 DDNVRFVKGWFPDTLPDAPIERIALLHLDC---DLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248) T ss_dssp STTEEEEES-HHHHCCC-TT--EEEEEE------SHHHHHHHHHHHGGGEEEEEEEEESSTTT T ss_pred cccEEEECCcchhhhccCCCccEEEEEEec---cchHHHHHHHHHHHhhcCCCeEEEEeCCCC Confidence 45799999998652 3 2233333322211 12234 99999999999999999998875 No 324 >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] Probab=95.41 E-value=0.053 Score=45.66 Aligned_cols=98 Identities=15% Similarity=0.091 Sum_probs=74.5 Q ss_pred CCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccccc Q psy2408 89 GQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIF 167 (298) Q Consensus 89 ~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 167 (298) +.+|.-||.|. |..+..++--.|+.|+.+|+|...+.+....+. .+++..-.+...+.-.-.+.|+|+..-.+- T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVLIp 242 (371) T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVLIP 242 (371) T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEEec Confidence 35788899996 888888887679999999999998888877764 346666666555422225789998766666 Q ss_pred ccChH-HHHHHHhhcccCCcEEEEE Q psy2408 168 HMNHS-AALNEARRVLKSGSILTLT 191 (298) Q Consensus 168 ~~~~~-~~l~~~~r~LkpgG~l~i~ 191 (298) --..| -..+++...||||+.++=. T Consensus 243 gakaPkLvt~e~vk~MkpGsVivDV 267 (371) T COG0686 243 GAKAPKLVTREMVKQMKPGSVIVDV 267 (371) T ss_pred CCCCceehhHHHHHhcCCCcEEEEE Confidence 66677 7888999999999987643 No 325 >KOG2651|consensus Probab=95.36 E-value=0.08 Score=45.79 Aligned_cols=44 Identities=27% Similarity=0.248 Sum_probs=38.0 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHH Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKT 130 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~ 130 (298) .+-..|+|+|.|.|.++..+.-.+|..|.++|-|....+.|++. T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476) T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476) T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH Confidence 45568999999999999999988899999999998777776654 No 326 >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. Probab=95.34 E-value=0.12 Score=46.08 Aligned_cols=101 Identities=15% Similarity=0.080 Sum_probs=67.1 Q ss_pred HHHHHHHhCCC-CCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC Q psy2408 76 LSRIMINKTSI-TKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD 153 (298) Q Consensus 76 ~~~~l~~~~~~-~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 153 (298) ..+.+++..++ -+|.+|+-+|+|. |......++..|++|+++|.++..++.|+.. |. ... +..+. . T Consensus 188 ~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~----G~----~~~--~~~e~-v- 255 (413) T cd00401 188 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME----GY----EVM--TMEEA-V- 255 (413) T ss_pred hHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc----CC----EEc--cHHHH-H- Confidence 34556665543 4789999999997 7777777776799999999998877766542 32 111 11111 1 Q ss_pred CCCeeEEEecccccccChHHHHHH-HhhcccCCcEEEEEeCC Q psy2408 154 NDSFDGGWFFESIFHMNHSAALNE-ARRVLKSGSILTLTDLP 194 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~~~~~~l~~-~~r~LkpgG~l~i~~~~ 194 (298) ..+|+|+.. ...+..+.. ..+.+++||+++..... T Consensus 256 -~~aDVVI~a-----tG~~~~i~~~~l~~mk~GgilvnvG~~ 291 (413) T cd00401 256 -KEGDIFVTT-----TGNKDIITGEHFEQMKDGAIVCNIGHF 291 (413) T ss_pred -cCCCEEEEC-----CCCHHHHHHHHHhcCCCCcEEEEeCCC Confidence 357988753 233444544 58899999998876543 No 327 >PLN02740 Alcohol dehydrogenase-like Probab=95.33 E-value=0.12 Score=45.98 Aligned_cols=100 Identities=20% Similarity=0.326 Sum_probs=65.5 Q ss_pred HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC-----CCC-C-CC Q psy2408 82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD-----ALN-L-PF 152 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d-----~~~-~-~~ 152 (298) +...+.++.+||=+|+|. |..+..+++..|+ +|+++|.+++.++.+++. |.. .++... ..+ + .. T Consensus 192 ~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~~~v~~~ 264 (381) T PLN02740 192 NTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM----GIT---DFINPKDSDKPVHERIREM 264 (381) T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc----CCc---EEEecccccchHHHHHHHH Confidence 445678899999999875 7777777777787 699999999888888643 321 122211 100 0 01 Q ss_pred CCCCeeEEEecccccccChHHHHHHHhhcccCC-cEEEEEeC Q psy2408 153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSG-SILTLTDL 193 (298) Q Consensus 153 ~~~~fD~V~~~~~l~~~~~~~~l~~~~r~Lkpg-G~l~i~~~ 193 (298) ..+.+|+|+- ....+..+......++++ |++++... T Consensus 265 ~~~g~dvvid-----~~G~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381) T PLN02740 265 TGGGVDYSFE-----CAGNVEVLREAFLSTHDGWGLTVLLGI 301 (381) T ss_pred hCCCCCEEEE-----CCCChHHHHHHHHhhhcCCCEEEEEcc Confidence 1236888854 333345677777888887 98877554 No 328 >PLN03154 putative allyl alcohol dehydrogenase; Provisional Probab=95.28 E-value=0.14 Score=44.81 Aligned_cols=99 Identities=20% Similarity=0.130 Sum_probs=65.1 Q ss_pred HhCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC----CCCC-C-CCC Q psy2408 82 NKTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG----DALN-L-PFD 153 (298) Q Consensus 82 ~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~----d~~~-~-~~~ 153 (298) ....+.++.+||=.|+ | .|..+..+++..|+++++++.+++..+.++..+ |.. .++.. +..+ + ... T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~l---Ga~---~vi~~~~~~~~~~~i~~~~ 225 (348) T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKL---GFD---EAFNYKEEPDLDAALKRYF 225 (348) T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhc---CCC---EEEECCCcccHHHHHHHHC Confidence 4456788999999998 4 488888888878999999999988777665322 321 12221 1111 0 111 Q ss_pred CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) .+.+|+|+-.- .. ..+....++|+++|++++.. T Consensus 226 ~~gvD~v~d~v-----G~-~~~~~~~~~l~~~G~iv~~G 258 (348) T PLN03154 226 PEGIDIYFDNV-----GG-DMLDAALLNMKIHGRIAVCG 258 (348) T ss_pred CCCcEEEEECC-----CH-HHHHHHHHHhccCCEEEEEC Confidence 24688886432 22 46677889999999988754 No 329 >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. Probab=95.24 E-value=0.069 Score=42.53 Aligned_cols=120 Identities=17% Similarity=0.026 Sum_probs=66.9 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHhc---------------- Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG---CRVDGITISKFQQESAMKTAKAE---------------- 134 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~~v~~vD~s~~~l~~a~~~~~~~---------------- 134 (298) .++.+..+..+.-..+-++.|-+||.|.+.--+.--.+ ..|.+.|+++.+++.|+.++.-. T Consensus 37 sEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~ 116 (246) T PF11599_consen 37 SEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELY 116 (246) T ss_dssp HHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHH Confidence 34444444555445667999999999998776654322 47999999999999998863210 Q ss_pred ---C----------------------CCCceEEEECCCCCCC-----CCCCCeeEEEeccccc----ccC----hH--HH Q psy2408 135 ---G----------------------LLDKVNFLHGDALNLP-----FDNDSFDGGWFFESIF----HMN----HS--AA 174 (298) Q Consensus 135 ---~----------------------~~~~i~~~~~d~~~~~-----~~~~~fD~V~~~~~l~----~~~----~~--~~ 174 (298) + -..-..+.+.|+.+.. ......|+|+.---.- |-. ++ .+ T Consensus 117 e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~m 196 (246) T PF11599_consen 117 EQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQM 196 (246) T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHH T ss_pred HHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHH Confidence 0 0112567788887731 0123368888632222 222 23 89 Q ss_pred HHHHhhcccCCcEEEEEeC Q psy2408 175 LNEARRVLKSGSILTLTDL 193 (298) Q Consensus 175 l~~~~r~LkpgG~l~i~~~ 193 (298) |..++++|-+++++.+++- T Consensus 197 l~~l~~vLp~~sVV~v~~k 215 (246) T PF11599_consen 197 LNSLAPVLPERSVVAVSDK 215 (246) T ss_dssp HHHHHCCS-TT-EEEEEES T ss_pred HHHHHhhCCCCcEEEEecC Confidence 9999999955566666443 No 330 >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] Probab=95.23 E-value=0.078 Score=41.39 Aligned_cols=104 Identities=21% Similarity=0.280 Sum_probs=74.0 Q ss_pred CCCeEEEeCCCCCHHHHHHHHh---cC--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-------CCCC Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKA---KG--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-------FDND 155 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~---~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~ 155 (298) .+..|+|+|+-.|..++..|.. .| .+|.++|++-..+..+-.. . +.|.|+.++..+.. ..++ T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~f~egss~dpai~eqi~~~~~~ 142 (237) T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDILFIEGSSTDPAIAEQIRRLKNE 142 (237) T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeEEEeCCCCCHHHHHHHHHHhcC Confidence 3469999999999888877764 35 7999999986554433222 2 46999999987742 2222 Q ss_pred CeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCC Q psy2408 156 SFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLS 197 (298) Q Consensus 156 ~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~ 197 (298) .--+.++..+-|+...- .-|+-+.++|..|-++++.+....+ T Consensus 143 y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237) T COG3510 143 YPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237) T ss_pred CCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccC Confidence 22344556666666666 8889999999999999998776554 No 331 >COG1568 Predicted methyltransferases [General function prediction only] Probab=95.22 E-value=0.16 Score=42.13 Aligned_cols=100 Identities=20% Similarity=0.173 Sum_probs=71.5 Q ss_pred CCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC---CCCeeEEEec Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD---NDSFDGGWFF 163 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD~V~~~ 163 (298) .|..|+-+| -.-..++.++-. +..++..+|+++..+....+.+++.|+. ++..+..|+.+ |+| ...||+.+. T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~-plpe~~~~kFDvfiT- 227 (354) T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRN-PLPEDLKRKFDVFIT- 227 (354) T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcc-cChHHHHhhCCeeec- Confidence 467899999 444555555543 4569999999999999999999999884 68999999987 454 368998653 Q ss_pred ccccccChH-HHHHHHhhcccCC---cEEEEE Q psy2408 164 ESIFHMNHS-AALNEARRVLKSG---SILTLT 191 (298) Q Consensus 164 ~~l~~~~~~-~~l~~~~r~Lkpg---G~l~i~ 191 (298) ..-+.++.. .++.+=...||.. |++.++ T Consensus 228 DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT 259 (354) T COG1568 228 DPPETIKALKLFLGRGIATLKGEGCAGYFGIT 259 (354) T ss_pred CchhhHHHHHHHHhccHHHhcCCCccceEeee Confidence 333344444 5666666677755 666664 No 332 >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional Probab=95.18 E-value=0.099 Score=45.67 Aligned_cols=101 Identities=21% Similarity=0.199 Sum_probs=64.1 Q ss_pred HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC---CCC--CCCC Q psy2408 82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA---LNL--PFDN 154 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~---~~~--~~~~ 154 (298) ......++.+||=.|+|. |..+..+++..|++ +++++.+++..+.+++. |.. .++..+- ..+ .... T Consensus 154 ~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~~~~~ 226 (347) T PRK10309 154 HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL----GAM---QTFNSREMSAPQIQSVLRE 226 (347) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCc---eEecCcccCHHHHHHHhcC Confidence 445567889999999875 66777777777886 78999999887776432 321 1221111 001 0122 Q ss_pred CCee-EEEecccccccChHHHHHHHhhcccCCcEEEEEeCC Q psy2408 155 DSFD-GGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 155 ~~fD-~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 194 (298) ..+| +|+ ........+....++|++||++++.... T Consensus 227 ~~~d~~v~-----d~~G~~~~~~~~~~~l~~~G~iv~~G~~ 262 (347) T PRK10309 227 LRFDQLIL-----ETAGVPQTVELAIEIAGPRAQLALVGTL 262 (347) T ss_pred CCCCeEEE-----ECCCCHHHHHHHHHHhhcCCEEEEEccC Confidence 3566 443 2333346778888999999998886543 No 333 >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Probab=95.12 E-value=0.17 Score=44.35 Aligned_cols=104 Identities=21% Similarity=0.163 Sum_probs=64.9 Q ss_pred HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----C-CCC Q psy2408 82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----P-FDN 154 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~ 154 (298) ....+.++.+||-.|||. |..+..+++..|++++++|.+++.++.+++. |...-+.....+..++ . ... T Consensus 160 ~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~~~~t~~ 235 (349) T TIGR03201 160 VQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGF----GADLTLNPKDKSAREVKKLIKAFAKA 235 (349) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCceEecCccccHHHHHHHHHhhccc Confidence 345678899999999976 7777777877788999999999988877543 3211111111110010 0 011 Q ss_pred CCee----EEEecccccccChHHHHHHHhhcccCCcEEEEEeCC Q psy2408 155 DSFD----GGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 155 ~~fD----~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 194 (298) ..+| +|+ ........+....++|++||++++.... T Consensus 236 ~g~d~~~d~v~-----d~~g~~~~~~~~~~~l~~~G~iv~~G~~ 274 (349) T TIGR03201 236 RGLRSTGWKIF-----ECSGSKPGQESALSLLSHGGTLVVVGYT 274 (349) T ss_pred CCCCCCcCEEE-----ECCCChHHHHHHHHHHhcCCeEEEECcC Confidence 2344 343 3333346677788899999999887544 No 334 >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase. Probab=95.12 E-value=0.1 Score=44.85 Aligned_cols=88 Identities=18% Similarity=0.141 Sum_probs=58.8 Q ss_pred CCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecc Q psy2408 87 TKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFE 164 (298) Q Consensus 87 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~ 164 (298) .++.+||=+|||. |.++..+++..|++ +.++|.++..++.+... . ++ |..+. ....+|+|+-. T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~--~~~g~Dvvid~- 207 (308) T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD--PRRDYRAIYDA- 207 (308) T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc--cCCCCCEEEEC- Confidence 3577899999885 77777788877876 67789888776665431 1 11 11110 12468887643 Q ss_pred cccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 165 SIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 165 ~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) ...+..+..+.+.|+++|++++... T Consensus 208 ----~G~~~~~~~~~~~l~~~G~iv~~G~ 232 (308) T TIGR01202 208 ----SGDPSLIDTLVRRLAKGGEIVLAGF 232 (308) T ss_pred ----CCCHHHHHHHHHhhhcCcEEEEEee Confidence 3334567888899999999987654 No 335 >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. Probab=95.12 E-value=0.064 Score=45.33 Aligned_cols=66 Identities=23% Similarity=0.120 Sum_probs=49.7 Q ss_pred eEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC--CCCeeEEEecc Q psy2408 91 RFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD--NDSFDGGWFFE 164 (298) Q Consensus 91 ~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fD~V~~~~ 164 (298) +|+|+-||.|.++.-+.+ .|. .+.++|+++..++..+.++.. .+++.|+.++... ...+|+++... T Consensus 2 ~v~dLFsG~Gg~~~gl~~-~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275) T cd00315 2 RVIDLFAGIGGFRLGLEK-AGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGF 70 (275) T ss_pred cEEEEccCcchHHHHHHH-cCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCC Confidence 699999999999888877 455 578899999998888776532 2567787776422 35799998754 No 336 >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. Probab=95.11 E-value=0.93 Score=40.14 Aligned_cols=114 Identities=18% Similarity=0.217 Sum_probs=68.9 Q ss_pred HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHH----HhcC----CeEEEEeC----CHHHHHHHHHHHH----hcCCCCce Q psy2408 77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLA----KAKG----CRVDGITI----SKFQQESAMKTAK----AEGLLDKV 140 (298) Q Consensus 77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~----~~~~----~~v~~vD~----s~~~l~~a~~~~~----~~~~~~~i 140 (298) .+.|++.+.-...-+|+|+|.|.|.--..|. .+.+ .++|+|+. +...++.+.+++. ..|++ . T Consensus 99 NqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~--f 176 (374) T PF03514_consen 99 NQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP--F 176 (374) T ss_pred hHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc--E Confidence 3456666665677799999999986544443 3322 48999999 7777777766644 44554 4 Q ss_pred EEEEC---CCCCC-----CCCCCCeeEEEecccccccCh-------H--HHHHHHhhcccCCcEEEEEeCC Q psy2408 141 NFLHG---DALNL-----PFDNDSFDGGWFFESIFHMNH-------S--AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 141 ~~~~~---d~~~~-----~~~~~~fD~V~~~~~l~~~~~-------~--~~l~~~~r~LkpgG~l~i~~~~ 194 (298) +|... +..++ ....+..=+|-+...++++.+ + .+|+ ..+.|+|.-.+ +.+.. T Consensus 177 ef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~-~ir~L~P~vvv-~~E~e 245 (374) T PF03514_consen 177 EFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLR-VIRSLNPKVVV-LVEQE 245 (374) T ss_pred EEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHH-HHHhcCCCEEE-EEeec Confidence 44442 33332 123344555556777788862 2 3554 44577998444 44443 No 337 >KOG1227|consensus Probab=95.08 E-value=0.011 Score=49.26 Aligned_cols=103 Identities=20% Similarity=0.211 Sum_probs=76.3 Q ss_pred CCCeEEEeCCCCCHHHH-HHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc Q psy2408 88 KGQRFIDIGCGFGLSGI-RLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI 166 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~-~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 166 (298) .+..|.|+=+|-|.++. .+.......|.++|.+|..++..++.++.+++..+...+.+|-.... ++...|.|.. T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~-~~~~AdrVnL---- 268 (351) T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK-PRLRADRVNL---- 268 (351) T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC-ccccchheee---- Confidence 45799999999999998 55553335899999999999999999998888777778888877643 4678888863 Q ss_pred cccChH-HHHHHHhhcccCCc--EEEEEeCCC Q psy2408 167 FHMNHS-AALNEARRVLKSGS--ILTLTDLPL 195 (298) Q Consensus 167 ~~~~~~-~~l~~~~r~LkpgG--~l~i~~~~~ 195 (298) --+|.. +-...+..+|+|.| .+-|.+... T Consensus 269 GLlPSse~~W~~A~k~Lk~eggsilHIHenV~ 300 (351) T KOG1227|consen 269 GLLPSSEQGWPTAIKALKPEGGSILHIHENVK 300 (351) T ss_pred ccccccccchHHHHHHhhhcCCcEEEEecccc Confidence 234444 55556677788764 455554443 No 338 >cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai Probab=95.01 E-value=0.19 Score=43.66 Aligned_cols=97 Identities=20% Similarity=0.210 Sum_probs=62.0 Q ss_pred CCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC---CCCCCCCCCCee Q psy2408 84 TSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD---ALNLPFDNDSFD 158 (298) Q Consensus 84 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~~~~fD 158 (298) +...++.+||-.|||. |..+..+++..|. ++++++.++...+.+++. +.. .++..+ ...+....+.+| T Consensus 161 ~~~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~vd 233 (339) T cd08232 161 AGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD---ETVNLARDPLAAYAADKGDFD 233 (339) T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC---EEEcCCchhhhhhhccCCCcc Confidence 3333788999998875 6677777777787 799999998877765543 221 122111 111211124589 Q ss_pred EEEecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 159 GGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 159 ~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) +|+.... ....++.+.+.|+++|+++... T Consensus 234 ~vld~~g-----~~~~~~~~~~~L~~~G~~v~~g 262 (339) T cd08232 234 VVFEASG-----APAALASALRVVRPGGTVVQVG 262 (339) T ss_pred EEEECCC-----CHHHHHHHHHHHhcCCEEEEEe Confidence 9875432 1245778889999999988654 No 339 >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] Probab=95.01 E-value=0.34 Score=41.55 Aligned_cols=107 Identities=19% Similarity=0.259 Sum_probs=73.4 Q ss_pred HHHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC----CCCC-- Q psy2408 79 IMINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD----ALNL-- 150 (298) Q Consensus 79 ~l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d----~~~~-- 150 (298) ..++..++++|.+|.-+|||. |..++.-+...++ +++++|+++.-++.|++.-. .++++.. +.+- T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGA-------T~~vn~~~~~~vv~~i~ 248 (366) T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGA-------THFVNPKEVDDVVEAIV 248 (366) T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCC-------ceeecchhhhhHHHHHH Confidence 456777889999999999996 7777666665554 89999999999999987622 3333331 1110 Q ss_pred CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCC Q psy2408 151 PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLS 197 (298) Q Consensus 151 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 197 (298) ..-++..|.+ ++...+...++.....+.++|..++.-..... T Consensus 249 ~~T~gG~d~~-----~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~ 290 (366) T COG1062 249 ELTDGGADYA-----FECVGNVEVMRQALEATHRGGTSVIIGVAGAG 290 (366) T ss_pred HhcCCCCCEE-----EEccCCHHHHHHHHHHHhcCCeEEEEecCCCC Confidence 1223355655 44445557888888888889998887665433 No 340 >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. Probab=94.93 E-value=0.24 Score=42.82 Aligned_cols=99 Identities=17% Similarity=0.137 Sum_probs=65.0 Q ss_pred HHhCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC----CCCC--CC Q psy2408 81 INKTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD----ALNL--PF 152 (298) Q Consensus 81 ~~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d----~~~~--~~ 152 (298) .+...+.++.+||=.|+ | .|..+..+++..|+++++++.+++..+.+++. |.. .++..+ ..+. .. T Consensus 131 ~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~~~~ 203 (325) T TIGR02825 131 LEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKL----GFD---VAFNYKTVKSLEETLKKA 203 (325) T ss_pred HHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC---EEEeccccccHHHHHHHh Confidence 35566788999999984 3 58888888887899999999998877777542 331 122211 1110 11 Q ss_pred CCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 153 ~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) ..+.+|+|+-. ... ..+....++|+++|+++... T Consensus 204 ~~~gvdvv~d~-----~G~-~~~~~~~~~l~~~G~iv~~G 237 (325) T TIGR02825 204 SPDGYDCYFDN-----VGG-EFSNTVIGQMKKFGRIAICG 237 (325) T ss_pred CCCCeEEEEEC-----CCH-HHHHHHHHHhCcCcEEEEec Confidence 22468988642 222 34578889999999998753 No 341 >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. Probab=94.85 E-value=0.16 Score=44.85 Aligned_cols=104 Identities=21% Similarity=0.232 Sum_probs=65.5 Q ss_pred HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE--CCCCC-C-CCCC Q psy2408 81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLH--GDALN-L-PFDN 154 (298) Q Consensus 81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~--~d~~~-~-~~~~ 154 (298) .+...+.++.+||=.|||. |..+..+++..|+ +|+++|.+++.++.+++. |...-+.... .+..+ + .... T Consensus 178 ~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----Ga~~~i~~~~~~~~~~~~v~~~~~ 253 (368) T TIGR02818 178 LNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----GATDCVNPNDYDKPIQEVIVEITD 253 (368) T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCeEEcccccchhHHHHHHHHhC Confidence 3456678899999999875 7777777887787 799999999988887553 3211111110 00000 0 0112 Q ss_pred CCeeEEEecccccccChHHHHHHHhhcccCC-cEEEEEeC Q psy2408 155 DSFDGGWFFESIFHMNHSAALNEARRVLKSG-SILTLTDL 193 (298) Q Consensus 155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~Lkpg-G~l~i~~~ 193 (298) +.+|+|+-. ...+..+....+.++++ |++++... T Consensus 254 ~g~d~vid~-----~G~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368) T TIGR02818 254 GGVDYSFEC-----IGNVNVMRAALECCHKGWGESIIIGV 288 (368) T ss_pred CCCCEEEEC-----CCCHHHHHHHHHHhhcCCCeEEEEec Confidence 357877532 33345677778889886 99887654 No 342 >PRK13699 putative methylase; Provisional Probab=94.74 E-value=0.07 Score=43.67 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=33.6 Q ss_pred EEEECCCCCC--CCCCCCeeEEEeccccc----c-----c-----ChH--HHHHHHhhcccCCcEEEEE Q psy2408 141 NFLHGDALNL--PFDNDSFDGGWFFESIF----H-----M-----NHS--AALNEARRVLKSGSILTLT 191 (298) Q Consensus 141 ~~~~~d~~~~--~~~~~~fD~V~~~~~l~----~-----~-----~~~--~~l~~~~r~LkpgG~l~i~ 191 (298) +++++|..+. .++++++|+|+..--.. . + .+. ..+.++.|+|||||.+++. T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227) T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227) T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE Confidence 4566776654 56678888887641110 0 0 011 7889999999999988763 No 343 >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim Probab=94.68 E-value=0.19 Score=44.32 Aligned_cols=102 Identities=23% Similarity=0.298 Sum_probs=65.4 Q ss_pred HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC-----CCC-C-C Q psy2408 81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD-----ALN-L-P 151 (298) Q Consensus 81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d-----~~~-~-~ 151 (298) .+...+.++.+||=.|+|. |..+..+++..|+ +|+++|.+++.++.+++. |.. .++... +.+ + . T Consensus 179 ~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l----Ga~---~~i~~~~~~~~~~~~v~~ 251 (368) T cd08300 179 LNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF----GAT---DCVNPKDHDKPIQQVLVE 251 (368) T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCC---EEEcccccchHHHHHHHH Confidence 3455678899999999875 6667777777788 799999999888877542 321 122111 100 0 0 Q ss_pred CCCCCeeEEEecccccccChHHHHHHHhhcccCC-cEEEEEeCC Q psy2408 152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSG-SILTLTDLP 194 (298) Q Consensus 152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~Lkpg-G~l~i~~~~ 194 (298) ...+.+|+|+-. ...+..+....+.++++ |+++..... T Consensus 252 ~~~~g~d~vid~-----~g~~~~~~~a~~~l~~~~G~~v~~g~~ 290 (368) T cd08300 252 MTDGGVDYTFEC-----IGNVKVMRAALEACHKGWGTSVIIGVA 290 (368) T ss_pred HhCCCCcEEEEC-----CCChHHHHHHHHhhccCCCeEEEEccC Confidence 112368888642 23335677788899887 988876543 No 344 >PLN02827 Alcohol dehydrogenase-like Probab=94.52 E-value=0.18 Score=44.68 Aligned_cols=100 Identities=20% Similarity=0.313 Sum_probs=63.1 Q ss_pred HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC-----CCC-C-CC Q psy2408 82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD-----ALN-L-PF 152 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d-----~~~-~-~~ 152 (298) ....+.++.+||-.|+|. |..+..+++..|+ .++++|.++...+.+++. |.. .++... ... + .. T Consensus 187 ~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----Ga~---~~i~~~~~~~~~~~~v~~~ 259 (378) T PLN02827 187 NVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----GVT---DFINPNDLSEPIQQVIKRM 259 (378) T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCc---EEEcccccchHHHHHHHHH Confidence 345567899999999875 6677777776787 588999998877777543 332 122111 100 0 01 Q ss_pred CCCCeeEEEecccccccChHHHHHHHhhcccCC-cEEEEEeC Q psy2408 153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSG-SILTLTDL 193 (298) Q Consensus 153 ~~~~fD~V~~~~~l~~~~~~~~l~~~~r~Lkpg-G~l~i~~~ 193 (298) ..+.+|+|+- ....+..+....+.+++| |++++... T Consensus 260 ~~~g~d~vid-----~~G~~~~~~~~l~~l~~g~G~iv~~G~ 296 (378) T PLN02827 260 TGGGADYSFE-----CVGDTGIATTALQSCSDGWGLTVTLGV 296 (378) T ss_pred hCCCCCEEEE-----CCCChHHHHHHHHhhccCCCEEEEECC Confidence 1235888753 233334667788889998 99987543 No 345 >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] Probab=94.40 E-value=0.43 Score=41.46 Aligned_cols=108 Identities=18% Similarity=0.152 Sum_probs=69.1 Q ss_pred HHHHHHhCCCCCCCeEEEeCCC--CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC---C Q psy2408 77 SRIMINKTSITKGQRFIDIGCG--FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL---P 151 (298) Q Consensus 77 ~~~l~~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~---~ 151 (298) ...+....+++++.+||=.|+. .|.++..|++..|+.++++--+++-.+.+++. |-+.-+.+...|+.+- . T Consensus 131 ~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~l----GAd~vi~y~~~~~~~~v~~~ 206 (326) T COG0604 131 WLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKEL----GADHVINYREEDFVEQVREL 206 (326) T ss_pred HHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhc----CCCEEEcCCcccHHHHHHHH Confidence 3444455677889999999943 47888888888887777777777655555544 3222233333333221 1 Q ss_pred CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC Q psy2408 152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 194 (298) .....+|+|+-.-.- ..+.+....|+++|+++..... T Consensus 207 t~g~gvDvv~D~vG~------~~~~~~l~~l~~~G~lv~ig~~ 243 (326) T COG0604 207 TGGKGVDVVLDTVGG------DTFAASLAALAPGGRLVSIGAL 243 (326) T ss_pred cCCCCceEEEECCCH------HHHHHHHHHhccCCEEEEEecC Confidence 123469999753332 5777788999999998886554 No 346 >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. Probab=94.40 E-value=0.044 Score=40.13 Aligned_cols=76 Identities=20% Similarity=0.301 Sum_probs=47.8 Q ss_pred eEEEECCCCCC-CCCCCCeeEEEecccccccChH-----HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhc Q psy2408 140 VNFLHGDALNL-PFDNDSFDGGWFFESIFHMNHS-----AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNI 213 (298) Q Consensus 140 i~~~~~d~~~~-~~~~~~fD~V~~~~~l~~~~~~-----~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 213 (298) +++..+|+.+. +--...||+|+.-. +.--.+| .+++.+.++++|||.+.-. + T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Ty--s------------------- 90 (124) T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATY--S------------------- 90 (124) T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES---------------------- T ss_pred EEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEe--e------------------- Confidence 55666776542 21126899988754 2222222 9999999999999976542 1 Q ss_pred ccCCCCcchHHHHHHhCCCcEEEEEeCCC Q psy2408 214 HSNFILVEHYPDLLNKSGFELIKIDDITS 242 (298) Q Consensus 214 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 242 (298) ....++..|.++||.+.....++. T Consensus 91 -----~a~~Vr~~L~~aGF~v~~~~g~g~ 114 (124) T PF05430_consen 91 -----SAGAVRRALQQAGFEVEKVPGFGR 114 (124) T ss_dssp ------BHHHHHHHHHCTEEEEEEE-STT T ss_pred -----chHHHHHHHHHcCCEEEEcCCCCC Confidence 134688999999999887776543 No 347 >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. Probab=94.38 E-value=0.12 Score=45.60 Aligned_cols=67 Identities=15% Similarity=0.146 Sum_probs=55.6 Q ss_pred hcCCCCceEEEECCCCCC--CCCCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCC Q psy2408 133 AEGLLDKVNFLHGDALNL--PFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSK 200 (298) Q Consensus 133 ~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~ 200 (298) +.++ ++++++++++.+. ..+++++|.++.++.+.++++. +.++++.+.++|||++++-........+ T Consensus 271 r~~~-drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~~~~ 342 (380) T PF11899_consen 271 RARL-DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPPWYP 342 (380) T ss_pred hcCC-CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCc Confidence 3344 6899999998775 3567999999999999999987 9999999999999999998776555443 No 348 >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac Probab=94.19 E-value=0.28 Score=42.35 Aligned_cols=98 Identities=15% Similarity=0.097 Sum_probs=64.4 Q ss_pred HhCCCCCCCeEEEeCC--CCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----CCCC Q psy2408 82 NKTSITKGQRFIDIGC--GFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----PFDN 154 (298) Q Consensus 82 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~ 154 (298) ....+.++.+||=.|+ |.|..+..+++..|+++++++.+++..+.+++. |.. .++...-.++ .... T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~----Ga~---~vi~~~~~~~~~~v~~~~~ 209 (329) T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKEL----GFD---AVFNYKTVSLEEALKEAAP 209 (329) T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC---EEEeCCCccHHHHHHHHCC Confidence 4556788999998884 347777888887899999999998877777652 331 2222111111 1112 Q ss_pred CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) ..+|+|+-.- .. ..+....+.|+++|+++... T Consensus 210 ~gvd~vld~~-----g~-~~~~~~~~~l~~~G~iv~~g 241 (329) T cd08294 210 DGIDCYFDNV-----GG-EFSSTVLSHMNDFGRVAVCG 241 (329) T ss_pred CCcEEEEECC-----CH-HHHHHHHHhhccCCEEEEEc Confidence 4688886422 12 46678889999999987653 No 349 >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i Probab=94.11 E-value=0.31 Score=42.96 Aligned_cols=105 Identities=26% Similarity=0.332 Sum_probs=64.6 Q ss_pred HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC--CC-C-CCCC Q psy2408 81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA--LN-L-PFDN 154 (298) Q Consensus 81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~--~~-~-~~~~ 154 (298) .+...+.++.+||=.|+|. |..+..+++..|+ +|+++|.++...+.+++. +...-+.....+. .. + .... T Consensus 177 ~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~ 252 (365) T cd08277 177 WNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF----GATDFINPKDSDKPVSEVIREMTG 252 (365) T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCCcEeccccccchHHHHHHHHhC Confidence 3445678899999998864 6666677777787 799999999888877542 3211111111000 00 0 0112 Q ss_pred CCeeEEEecccccccChHHHHHHHhhcccCC-cEEEEEeCC Q psy2408 155 DSFDGGWFFESIFHMNHSAALNEARRVLKSG-SILTLTDLP 194 (298) Q Consensus 155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~Lkpg-G~l~i~~~~ 194 (298) ..+|+|+-. ......+....+.++++ |++++.... T Consensus 253 ~g~d~vid~-----~g~~~~~~~~~~~l~~~~G~~v~~g~~ 288 (365) T cd08277 253 GGVDYSFEC-----TGNADLMNEALESTKLGWGVSVVVGVP 288 (365) T ss_pred CCCCEEEEC-----CCChHHHHHHHHhcccCCCEEEEEcCC Confidence 468888632 22235677788899886 998876543 No 350 >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an Probab=94.01 E-value=0.57 Score=40.46 Aligned_cols=99 Identities=24% Similarity=0.188 Sum_probs=64.0 Q ss_pred hCCCCCCCeEEEeCCC-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-CCCCCeeEE Q psy2408 83 KTSITKGQRFIDIGCG-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-FDNDSFDGG 160 (298) Q Consensus 83 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~V 160 (298) ...+.++.+||-.||| .|..+..+++..|.++++++.+++..+.+++. +.. .++...-.... ...+.+|+| T Consensus 157 ~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~d~v 229 (330) T cd08245 157 DAGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKL----GAD---EVVDSGAELDEQAAAGGADVI 229 (330) T ss_pred hhCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----CCc---EEeccCCcchHHhccCCCCEE Confidence 3567788899999987 47777777777788999999999887777432 211 11111110100 012468888 Q ss_pred EecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 161 WFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 161 ~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) +... .....+..+.+.|+++|.++.... T Consensus 230 i~~~-----~~~~~~~~~~~~l~~~G~~i~~~~ 257 (330) T cd08245 230 LVTV-----VSGAAAEAALGGLRRGGRIVLVGL 257 (330) T ss_pred EECC-----CcHHHHHHHHHhcccCCEEEEECC Confidence 6432 223567788899999999887643 No 351 >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] Probab=93.97 E-value=1.3 Score=37.94 Aligned_cols=148 Identities=14% Similarity=0.016 Sum_probs=90.6 Q ss_pred CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCCceEEEECCCCCCC---------CCCCCe Q psy2408 89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEG--LLDKVNFLHGDALNLP---------FDNDSF 157 (298) Q Consensus 89 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~--~~~~i~~~~~d~~~~~---------~~~~~f 157 (298) ...|+-+|||-=.-+..+-.-.+.+|.-+|. |+.++.=++.+.+.+ ++.+.+++..|+.+-. +..+.- T Consensus 93 ~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~p 171 (297) T COG3315 93 IRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRP 171 (297) T ss_pred ccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCC Confidence 5799999999755444443322456666665 555555555555544 2346889999998432 223445 Q ss_pred eEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCC-CCC--hhHHHHHHH-----hhcccCCCCcchHHHH Q psy2408 158 DGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSV-SKN--DNKFKEYVK-----KNIHSNFILVEHYPDL 226 (298) Q Consensus 158 D~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~-~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~~ 226 (298) -++++-+++.+++.. .+|..+...+.||..++......... ... ......... ...........++..+ T Consensus 172 t~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~ 251 (297) T COG3315 172 TLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIETW 251 (297) T ss_pred eEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHHHH Confidence 578889999999987 99999999999988877764311110 000 000000000 0011123447899999 Q ss_pred HHhCCCcEEEE Q psy2408 227 LNKSGFELIKI 237 (298) Q Consensus 227 l~~~Gf~~~~~ 237 (298) +.+.||..... T Consensus 252 l~~~g~~~~~~ 262 (297) T COG3315 252 LAERGWRSTLN 262 (297) T ss_pred HHhcCEEEEec Confidence 99999986654 No 352 >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD Probab=93.93 E-value=0.82 Score=38.33 Aligned_cols=99 Identities=26% Similarity=0.277 Sum_probs=63.6 Q ss_pred HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeE Q psy2408 82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDG 159 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 159 (298) ....+.++.+||-.|||. |..+..+++..|.+ +++++.+++..+.+++. +....+ ... .........+|+ T Consensus 91 ~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~--~~~--~~~~~~~~~~d~ 162 (277) T cd08255 91 RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPV--AAD--TADEIGGRGADV 162 (277) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccc--ccc--chhhhcCCCCCE Confidence 355677889999998875 66777777777887 99999999887766643 211111 111 000112346898 Q ss_pred EEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 160 GWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 160 V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) |+.... ....+....+.|+++|+++.... T Consensus 163 vl~~~~-----~~~~~~~~~~~l~~~g~~~~~g~ 191 (277) T cd08255 163 VIEASG-----SPSALETALRLLRDRGRVVLVGW 191 (277) T ss_pred EEEccC-----ChHHHHHHHHHhcCCcEEEEEec Confidence 874321 12466778889999999886543 No 353 >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta Probab=93.90 E-value=0.69 Score=39.75 Aligned_cols=97 Identities=19% Similarity=0.164 Sum_probs=64.2 Q ss_pred HHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCee Q psy2408 80 MINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFD 158 (298) Q Consensus 80 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 158 (298) ++....+.++.+||=.|+|. |..+..+++..|.++++++.+++..+.++. .+... .. +.... .....+| T Consensus 147 ~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~~---~~--~~~~~-~~~~~~d 216 (319) T cd08242 147 ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVET---VL--PDEAE-SEGGGFD 216 (319) T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCcE---Ee--Ccccc-ccCCCCC Confidence 34556678889999998764 555666666678899999999988887765 23321 11 11111 2345689 Q ss_pred EEEecccccccChHHHHHHHhhcccCCcEEEEE Q psy2408 159 GGWFFESIFHMNHSAALNEARRVLKSGSILTLT 191 (298) Q Consensus 159 ~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~ 191 (298) +|+-. ......+..+.+.|+++|.+++. T Consensus 217 ~vid~-----~g~~~~~~~~~~~l~~~g~~v~~ 244 (319) T cd08242 217 VVVEA-----TGSPSGLELALRLVRPRGTVVLK 244 (319) T ss_pred EEEEC-----CCChHHHHHHHHHhhcCCEEEEE Confidence 88753 22224667788899999999873 No 354 >PLN02586 probable cinnamyl alcohol dehydrogenase Probab=93.88 E-value=0.38 Score=42.37 Aligned_cols=97 Identities=23% Similarity=0.209 Sum_probs=58.7 Q ss_pred CCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC-CCCCCCCCCCCeeEEEec Q psy2408 86 ITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG-DALNLPFDNDSFDGGWFF 163 (298) Q Consensus 86 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~fD~V~~~ 163 (298) +.++.+||-.|+|. |..+..+++..|+++++++.++.....+. ...|.. .++.. +...+.-..+.+|+|+- T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~---~~~Ga~---~vi~~~~~~~~~~~~~~~D~vid- 253 (360) T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAI---NRLGAD---SFLVSTDPEKMKAAIGTMDYIID- 253 (360) T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHH---HhCCCc---EEEcCCCHHHHHhhcCCCCEEEE- Confidence 45788999999875 77777788877889999888765432221 122321 12211 11111000124787763 Q ss_pred ccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 164 ESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 164 ~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) ....+..+....++|+++|+++.... T Consensus 254 ----~~g~~~~~~~~~~~l~~~G~iv~vG~ 279 (360) T PLN02586 254 ----TVSAVHALGPLLGLLKVNGKLITLGL 279 (360) T ss_pred ----CCCCHHHHHHHHHHhcCCcEEEEeCC Confidence 22333567788899999999887643 No 355 >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, Probab=93.75 E-value=0.21 Score=43.36 Aligned_cols=102 Identities=27% Similarity=0.336 Sum_probs=64.9 Q ss_pred HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-C--CCCCCCe Q psy2408 82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-L--PFDNDSF 157 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~--~~~~~~f 157 (298) ....+.++.+||-.|+|. |..+..+++..|.+++++..+++..+.+++. +...-+.....+... + ..+...+ T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~----g~~~v~~~~~~~~~~~l~~~~~~~~v 228 (337) T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL----GADDTINVGDEDVAARLRELTDGEGA 228 (337) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh----CCCEEecCcccCHHHHHHHHhCCCCC Confidence 455677889999998774 7777778887899999998888877776443 211101111111100 1 1123468 Q ss_pred eEEEecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 158 DGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 158 D~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) |+++... .....+..+.+.|+++|+++... T Consensus 229 d~vld~~-----g~~~~~~~~~~~l~~~G~~i~~g 258 (337) T cd08261 229 DVVIDAT-----GNPASMEEAVELVAHGGRVVLVG 258 (337) T ss_pred CEEEECC-----CCHHHHHHHHHHHhcCCEEEEEc Confidence 9987542 12256778889999999987654 No 356 >cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Probab=93.73 E-value=1.3 Score=38.46 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=65.1 Q ss_pred HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-------C- Q psy2408 81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-------L- 150 (298) Q Consensus 81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-------~- 150 (298) +....+.++.+||-.|+|. |..+..+++..|.+ +++++.+++..+.+++. +.. .++..+-.. + T Consensus 155 ~~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~ 227 (343) T cd05285 155 CRRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GAT---HTVNVRTEDTPESAEKIA 227 (343) T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCc---EEeccccccchhHHHHHH Confidence 3566778899999988765 66777777777887 89998888877766542 221 122111111 1 Q ss_pred -CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 151 -PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 151 -~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) ......+|+|+-+.. ....+....+.|+++|+++.... T Consensus 228 ~~~~~~~~d~vld~~g-----~~~~~~~~~~~l~~~G~~v~~g~ 266 (343) T cd05285 228 ELLGGKGPDVVIECTG-----AESCIQTAIYATRPGGTVVLVGM 266 (343) T ss_pred HHhCCCCCCEEEECCC-----CHHHHHHHHHHhhcCCEEEEEcc Confidence 122355899875422 12467788899999999886543 No 357 >KOG0821|consensus Probab=93.71 E-value=0.92 Score=36.43 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=58.1 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL 150 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~ 150 (298) .++.+.+....+.-...-|.+||.|.|..+..+...--.++..|+.++.++.-.+-..+.. +.+..+...|+..+ T Consensus 36 ~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~D~LR~ 110 (326) T KOG0821|consen 36 LRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHGDVLRF 110 (326) T ss_pred hHHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC--CcceEEecccccee Confidence 4677888888877777899999999999999998843358889999988877776665533 34677788887653 No 358 >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal Probab=93.62 E-value=0.4 Score=41.62 Aligned_cols=100 Identities=14% Similarity=0.091 Sum_probs=63.9 Q ss_pred HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC---CCCCCe Q psy2408 82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP---FDNDSF 157 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~f 157 (298) ..+.+.++.+||=.|||. |..+..+++..|.++++++.+++.++.+++. +.. .++...-.++. .....+ T Consensus 157 ~~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~----g~~---~~i~~~~~~~~~~~~~~~~~ 229 (333) T cd08296 157 RNSGAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKL----GAH---HYIDTSKEDVAEALQELGGA 229 (333) T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc----CCc---EEecCCCccHHHHHHhcCCC Confidence 344677889999999765 6777777777788999999998877777432 321 12221111110 001347 Q ss_pred eEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 158 DGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 158 D~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) |+++.. ......+..+.+.|+++|+++.... T Consensus 230 d~vi~~-----~g~~~~~~~~~~~l~~~G~~v~~g~ 260 (333) T cd08296 230 KLILAT-----APNAKAISALVGGLAPRGKLLILGA 260 (333) T ss_pred CEEEEC-----CCchHHHHHHHHHcccCCEEEEEec Confidence 888642 2223567778899999999887644 No 359 >cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid Probab=93.60 E-value=0.51 Score=41.07 Aligned_cols=99 Identities=19% Similarity=0.173 Sum_probs=62.3 Q ss_pred HhCCCCCC--CeEEEeCC--CCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----C Q psy2408 82 NKTSITKG--QRFIDIGC--GFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----P 151 (298) Q Consensus 82 ~~~~~~~~--~~vLDiGc--G~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~ 151 (298) +...+.++ .+||=.|+ |.|..+..+++..|+ +|++++.+++..+.+++.+ |.. .++..+-.++ . T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l---Ga~---~vi~~~~~~~~~~i~~ 219 (345) T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL---GFD---AAINYKTDNVAERLRE 219 (345) T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc---CCc---EEEECCCCCHHHHHHH Confidence 33345555 89999986 357788888887888 7999999988777766532 332 1222211111 1 Q ss_pred CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) .....+|+|+-.. .. ..+....++|+++|+++... T Consensus 220 ~~~~gvd~vid~~-----g~-~~~~~~~~~l~~~G~iv~~G 254 (345) T cd08293 220 LCPEGVDVYFDNV-----GG-EISDTVISQMNENSHIILCG 254 (345) T ss_pred HCCCCceEEEECC-----Cc-HHHHHHHHHhccCCEEEEEe Confidence 1124689887432 12 23567888999999988653 No 360 >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found Probab=93.59 E-value=1 Score=40.42 Aligned_cols=102 Identities=20% Similarity=0.260 Sum_probs=62.6 Q ss_pred hCCCCCCCeEEEeC-CCC-CHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhc----CCCCceEEEEC----CCCC Q psy2408 83 KTSITKGQRFIDIG-CGF-GLSGIRLAKAKGC---RVDGITISKFQQESAMKTAKAE----GLLDKVNFLHG----DALN 149 (298) Q Consensus 83 ~~~~~~~~~vLDiG-cG~-G~~~~~l~~~~~~---~v~~vD~s~~~l~~a~~~~~~~----~~~~~i~~~~~----d~~~ 149 (298) ...+.++.+||=+| +|. |..+..+++..|. +|+++|.++..++.+++..... |. ...++.. +..+ T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga--~~~~i~~~~~~~~~~ 247 (410) T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI--ELLYVNPATIDDLHA 247 (410) T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc--eEEEECCCccccHHH Confidence 34567888999997 454 7777778876543 7999999999999887753211 11 0112211 1100 Q ss_pred -C-C-CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEE Q psy2408 150 -L-P-FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLT 191 (298) Q Consensus 150 -~-~-~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~ 191 (298) + . .....+|+|+.. ...+..+....+.++++|.+++. T Consensus 248 ~v~~~t~g~g~D~vid~-----~g~~~~~~~a~~~l~~~G~~v~~ 287 (410) T cd08238 248 TLMELTGGQGFDDVFVF-----VPVPELVEEADTLLAPDGCLNFF 287 (410) T ss_pred HHHHHhCCCCCCEEEEc-----CCCHHHHHHHHHHhccCCeEEEE Confidence 0 0 122468887642 22236777888999988876653 No 361 >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated Probab=93.59 E-value=2 Score=37.20 Aligned_cols=147 Identities=12% Similarity=0.061 Sum_probs=78.5 Q ss_pred CCeEEEeCCCC-CH-HHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-------hcCCC-----CceEEEECCCCCCCCCC Q psy2408 89 GQRFIDIGCGF-GL-SGIRLAKAKGCRVDGITISKFQQESAMKTAK-------AEGLL-----DKVNFLHGDALNLPFDN 154 (298) Q Consensus 89 ~~~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~-------~~~~~-----~~i~~~~~d~~~~~~~~ 154 (298) -.+|--||+|+ |. ++..++. .|..|+..|++++.++.++..+. +.++. .++++. .++.+ . - T Consensus 7 i~~VaVIGaG~MG~giA~~~a~-aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~-a--v 81 (321) T PRK07066 7 IKTFAAIGSGVIGSGWVARALA-HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA-C--V 81 (321) T ss_pred CCEEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH-H--h Confidence 35788899986 33 3333444 68999999999998877666433 12211 112211 11111 0 1 Q ss_pred CCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh--------hcc----------- Q psy2408 155 DSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK--------NIH----------- 214 (298) Q Consensus 155 ~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~--------~~~----------- 214 (298) ...|+|+-+ +.+...-. .+++++.+.++|+. ++.+..+. .. ...+...... +.. T Consensus 82 ~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~---l~-~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv 155 (321) T PRK07066 82 ADADFIQES-APEREALKLELHERISRAAKPDA-IIASSTSG---LL-PTDFYARATHPERCVVGHPFNPVYLLPLVEVL 155 (321) T ss_pred cCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCe-EEEECCCc---cC-HHHHHHhcCCcccEEEEecCCccccCceEEEe Confidence 346766532 33333334 88999999999987 33333221 11 1122111110 000 Q ss_pred cCCCC----cchHHHHHHhCCCcEEEE-EeCCCCccc Q psy2408 215 SNFIL----VEHYPDLLNKSGFELIKI-DDITSHVMP 246 (298) Q Consensus 215 ~~~~~----~~~~~~~l~~~Gf~~~~~-~~~~~~~~~ 246 (298) +...| .+...+++++.|...+.+ .+.+..+.+ T Consensus 156 ~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~N 192 (321) T PRK07066 156 GGERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFIAD 192 (321) T ss_pred CCCCCCHHHHHHHHHHHHHcCCEeEecCCCCccHHHH Confidence 01122 234467888899988887 577766665 No 362 >TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). Probab=93.59 E-value=1.4 Score=40.76 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=71.2 Q ss_pred HHHHHHHHhCCC--CCCCeEEEeCCCCCHHHHHHHHhc--C---CeEEEEeCCHHHHHHHHHHHHhcCCCC-ceEEEECC Q psy2408 75 KLSRIMINKTSI--TKGQRFIDIGCGFGLSGIRLAKAK--G---CRVDGITISKFQQESAMKTAKAEGLLD-KVNFLHGD 146 (298) Q Consensus 75 ~~~~~l~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~--~---~~v~~vD~s~~~l~~a~~~~~~~~~~~-~i~~~~~d 146 (298) .+++.+.+.+.. .|+..|.|..||+|.+........ + ..++|.+....+...++..+.-.+... ......+| T Consensus 202 ~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~d 281 (501) T TIGR00497 202 DISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINAD 281 (501) T ss_pred HHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCC Confidence 344444443332 256799999999999876544322 2 469999999999999998865554421 22222333 Q ss_pred CCC-CCC-CCCCeeEEEecc------------------------cccccChH--HHHHHHhhcccCCcEEEEEe Q psy2408 147 ALN-LPF-DNDSFDGGWFFE------------------------SIFHMNHS--AALNEARRVLKSGSILTLTD 192 (298) Q Consensus 147 ~~~-~~~-~~~~fD~V~~~~------------------------~l~~~~~~--~~l~~~~r~LkpgG~l~i~~ 192 (298) -.. ..+ ....||.|+++- .+.+..+. .++..+...|++||+..+.- T Consensus 282 tl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501) T TIGR00497 282 TLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501) T ss_pred cCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe Confidence 222 111 124567666422 11122223 88999999999999855543 No 363 >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Probab=93.49 E-value=0.44 Score=41.68 Aligned_cols=100 Identities=18% Similarity=0.224 Sum_probs=64.5 Q ss_pred HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----C-CC Q psy2408 82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----P-FD 153 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~ 153 (298) ....+.++.+||-.|+|. |..+..+++..|. .++++|.+++..+.++.. +.. .++...-.++ . .. T Consensus 160 ~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~v~~~~~~~~~~i~~~~~ 232 (351) T cd08285 160 ELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY----GAT---DIVDYKNGDVVEQILKLTG 232 (351) T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCc---eEecCCCCCHHHHHHHHhC Confidence 455677889999998874 6667777776787 599999998877776642 321 1222111111 1 12 Q ss_pred CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) ...+|+|+-. ......+..+.+.|+++|+++.... T Consensus 233 ~~~~d~vld~-----~g~~~~~~~~~~~l~~~G~~v~~g~ 267 (351) T cd08285 233 GKGVDAVIIA-----GGGQDTFEQALKVLKPGGTISNVNY 267 (351) T ss_pred CCCCcEEEEC-----CCCHHHHHHHHHHhhcCCEEEEecc Confidence 3468988642 2223567888999999999886543 No 364 >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the Probab=93.42 E-value=0.4 Score=42.31 Aligned_cols=102 Identities=22% Similarity=0.320 Sum_probs=64.5 Q ss_pred HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC-C-C----C-C Q psy2408 81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA-L-N----L-P 151 (298) Q Consensus 81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~-~-~----~-~ 151 (298) .+...+.++.+||=.|+|. |..+..+++..|+ +|+++|.+++.++.+++. |.. .++..+- . . + . T Consensus 180 ~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~v~~ 252 (369) T cd08301 180 WNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF----GVT---EFVNPKDHDKPVQEVIAE 252 (369) T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc---eEEcccccchhHHHHHHH Confidence 3445678899999999864 6666777776787 799999999888877542 321 1221110 0 0 0 0 Q ss_pred CCCCCeeEEEecccccccChHHHHHHHhhcccCC-cEEEEEeCC Q psy2408 152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSG-SILTLTDLP 194 (298) Q Consensus 152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~Lkpg-G~l~i~~~~ 194 (298) ...+.+|+|+- .......+....+.++++ |++++.... T Consensus 253 ~~~~~~d~vid-----~~G~~~~~~~~~~~~~~~~g~~v~~g~~ 291 (369) T cd08301 253 MTGGGVDYSFE-----CTGNIDAMISAFECVHDGWGVTVLLGVP 291 (369) T ss_pred HhCCCCCEEEE-----CCCChHHHHHHHHHhhcCCCEEEEECcC Confidence 11235787753 223345667778888996 998876543 No 365 >cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Probab=93.41 E-value=1.1 Score=38.72 Aligned_cols=100 Identities=19% Similarity=0.146 Sum_probs=64.8 Q ss_pred HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC----CCCCC Q psy2408 82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL----PFDND 155 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~ 155 (298) ....+.++.+||-+|+|. |..+..+++..|.+ +++++.+++..+.+++. +.. .++..+-... ....+ T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~ 225 (334) T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT---ETVDPSREDPEAQKEDNPY 225 (334) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe---EEecCCCCCHHHHHHhcCC Confidence 456677889999998763 66667777767876 89999998887776433 321 2222211110 11235 Q ss_pred CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) .+|+++.+. .....+..+.+.|+++|+++.... T Consensus 226 ~vd~v~~~~-----~~~~~~~~~~~~l~~~G~~v~~g~ 258 (334) T cd08234 226 GFDVVIEAT-----GVPKTLEQAIEYARRGGTVLVFGV 258 (334) T ss_pred CCcEEEECC-----CChHHHHHHHHHHhcCCEEEEEec Confidence 689987532 122567788899999999887544 No 366 >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in Probab=93.37 E-value=0.7 Score=40.17 Aligned_cols=102 Identities=20% Similarity=0.142 Sum_probs=65.0 Q ss_pred HhCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC-CCCC-C-CCCCCC Q psy2408 82 NKTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG-DALN-L-PFDNDS 156 (298) Q Consensus 82 ~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~~ 156 (298) +...+.+|.+||=.|+ | .|..+..+++..|+++++++.+++..+.+++.+ |...-+..... +..+ + ....+. T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~g 221 (338) T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL---GFDDAFNYKEEPDLDAALKRYFPNG 221 (338) T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCceeEEcCCcccHHHHHHHhCCCC Confidence 4456788999999986 3 477777888878999999999988777776532 32111111111 1111 0 111246 Q ss_pred eeEEEecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 157 FDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 157 fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) +|+|+-.. .. ..+....++|+++|+++... T Consensus 222 vd~v~d~~-----g~-~~~~~~~~~l~~~G~iv~~G 251 (338) T cd08295 222 IDIYFDNV-----GG-KMLDAVLLNMNLHGRIAACG 251 (338) T ss_pred cEEEEECC-----CH-HHHHHHHHHhccCcEEEEec Confidence 88886422 22 46678889999999988654 No 367 >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... Probab=93.27 E-value=2.1 Score=30.55 Aligned_cols=84 Identities=18% Similarity=0.152 Sum_probs=54.5 Q ss_pred CCCCHHHHHHHHhc--C-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----CCCCCeeEEEeccccccc Q psy2408 97 CGFGLSGIRLAKAK--G-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----FDNDSFDGGWFFESIFHM 169 (298) Q Consensus 97 cG~G~~~~~l~~~~--~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~~~~l~~~ 169 (298) ||.|..+..+++.+ + ..|+.+|.+++.++.++.. .+.++.+|..+.. ..-++.|.|++... T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~---- 71 (116) T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERAGIEKADAVVILTD---- 71 (116) T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHTTGGCESEEEEESS---- T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhcCccccCEEEEccC---- Confidence 56677888887753 4 4899999999887777654 2678999998742 22356787765322 Q ss_pred ChH--HHHHHHhhcccCCcEEEEEe Q psy2408 170 NHS--AALNEARRVLKSGSILTLTD 192 (298) Q Consensus 170 ~~~--~~l~~~~r~LkpgG~l~i~~ 192 (298) .+. ..+....+-+.|...++... T Consensus 72 ~d~~n~~~~~~~r~~~~~~~ii~~~ 96 (116) T PF02254_consen 72 DDEENLLIALLARELNPDIRIIARV 96 (116) T ss_dssp SHHHHHHHHHHHHHHTTTSEEEEEE T ss_pred CHHHHHHHHHHHHHHCCCCeEEEEE Confidence 222 44445556677877777653 No 368 >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast Probab=93.06 E-value=0.36 Score=42.00 Aligned_cols=98 Identities=20% Similarity=0.228 Sum_probs=62.8 Q ss_pred hCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC---CCC-C-CCCC Q psy2408 83 KTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA---LNL-P-FDND 155 (298) Q Consensus 83 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~---~~~-~-~~~~ 155 (298) ...+.++.+||-.|+|. |..+..+++..|.. +++++.++...+.++.. +.. .++...- ..+ . .+.. T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~----g~~---~~~~~~~~~~~~~~~~~~~~ 226 (343) T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL----GAD---DTINPKEEDVEKVRELTEGR 226 (343) T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCC---EEecCccccHHHHHHHhCCC Confidence 45667888999998765 66777777777886 99999888777666432 321 1222111 111 1 1224 Q ss_pred CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) .+|+|+.+ ......+..+.++|+++|+++... T Consensus 227 ~~d~vld~-----~g~~~~~~~~~~~l~~~G~~v~~g 258 (343) T cd08236 227 GADLVIEA-----AGSPATIEQALALARPGGKVVLVG 258 (343) T ss_pred CCCEEEEC-----CCCHHHHHHHHHHhhcCCEEEEEc Confidence 58988753 222356778899999999987764 No 369 >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Probab=93.04 E-value=0.27 Score=43.01 Aligned_cols=103 Identities=18% Similarity=0.180 Sum_probs=63.8 Q ss_pred HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-C-C-CCCCC Q psy2408 82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-L-P-FDNDS 156 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~-~-~~~~~ 156 (298) ....+.++.+||=.|+|. |..+..+++..|+ .|++++.+++..+.+++. +...-+.....+..+ + . ..... T Consensus 166 ~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~l~~~~~~~~ 241 (351) T cd08233 166 RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GATIVLDPTEVDVVAEVRKLTGGGG 241 (351) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEECCCccCHHHHHHHHhCCCC Confidence 455677889999998764 5666666776788 899999999888777542 321111111111100 0 0 12235 Q ss_pred eeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 157 FDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 157 fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) +|+|+-.. .....+..+.+.|+++|+++.... T Consensus 242 ~d~vid~~-----g~~~~~~~~~~~l~~~G~~v~~g~ 273 (351) T cd08233 242 VDVSFDCA-----GVQATLDTAIDALRPRGTAVNVAI 273 (351) T ss_pred CCEEEECC-----CCHHHHHHHHHhccCCCEEEEEcc Confidence 89886432 223467788899999999887644 No 370 >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... Probab=93.02 E-value=0.41 Score=37.64 Aligned_cols=98 Identities=18% Similarity=0.097 Sum_probs=56.0 Q ss_pred eEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-------cC-CC--------CceEEEECCCCCCCCC Q psy2408 91 RFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKA-------EG-LL--------DKVNFLHGDALNLPFD 153 (298) Q Consensus 91 ~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~-------~~-~~--------~~i~~~~~d~~~~~~~ 153 (298) +|.-+|+|+ |.-...+....|.+|+.+|.+++.++.+++.+.. .+ +. .+++ ...|+.+. T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~--- 76 (180) T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA--- 76 (180) T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG--- T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH--- Confidence 356678876 4332222222589999999999999988887654 11 11 1333 34444443 Q ss_pred CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCC Q psy2408 154 NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~ 194 (298) ...|+|+= .+.+.+.-. .+++++.+++.|+..|.-.... T Consensus 77 -~~adlViE-ai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs 116 (180) T PF02737_consen 77 -VDADLVIE-AIPEDLELKQELFAELDEICPPDTILASNTSS 116 (180) T ss_dssp -CTESEEEE--S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS T ss_pred -hhhheehh-hccccHHHHHHHHHHHHHHhCCCceEEecCCC Confidence 25677642 122333334 9999999999999876665433 No 371 >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino Probab=93.00 E-value=1.9 Score=37.80 Aligned_cols=95 Identities=26% Similarity=0.204 Sum_probs=59.8 Q ss_pred CCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-------C-C-CCCC Q psy2408 87 TKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-------L-P-FDND 155 (298) Q Consensus 87 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-------~-~-~~~~ 155 (298) .++.+||=.|+|. |..+..+++..|+ ++++++.+++..+.+++ .+.. .++...-.. + . .... T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~~~~~ 248 (361) T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGAD---ATIDIDELPDPQRRAIVRDITGGR 248 (361) T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCC---eEEcCcccccHHHHHHHHHHhCCC Confidence 4788999998764 6666777777788 89999998877666643 2332 122111110 0 0 1234 Q ss_pred CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) .+|+|+-.. .....+....+.|+++|+++.... T Consensus 249 ~~d~vid~~-----g~~~~~~~~~~~l~~~G~~v~~g~ 281 (361) T cd08231 249 GADVVIEAS-----GHPAAVPEGLELLRRGGTYVLVGS 281 (361) T ss_pred CCcEEEECC-----CChHHHHHHHHHhccCCEEEEEcC Confidence 689887432 112456778899999999987543 No 372 >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha Probab=92.94 E-value=2.8 Score=36.07 Aligned_cols=96 Identities=24% Similarity=0.245 Sum_probs=62.8 Q ss_pred HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEE Q psy2408 82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGG 160 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V 160 (298) ...++.++.+||=.|||. |..+..+++..|.++++++.++...+.+++ .+.. .++.. ... +.+.+|++ T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~--~~~--~~~~vD~v 229 (329) T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGAD---WAGDS--DDL--PPEPLDAA 229 (329) T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCCc---EEecc--Ccc--CCCcccEE Confidence 556677888999888774 555566667678899999998876666643 2321 11111 111 23468887 Q ss_pred EecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 161 WFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 161 ~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) +... .....+..+.+.|+++|+++.... T Consensus 230 i~~~-----~~~~~~~~~~~~l~~~G~~v~~g~ 257 (329) T cd08298 230 IIFA-----PVGALVPAALRAVKKGGRVVLAGI 257 (329) T ss_pred EEcC-----CcHHHHHHHHHHhhcCCEEEEEcC Confidence 6431 112578889999999999987653 No 373 >PLN02514 cinnamyl-alcohol dehydrogenase Probab=92.84 E-value=1.3 Score=38.93 Aligned_cols=96 Identities=28% Similarity=0.251 Sum_probs=58.6 Q ss_pred CCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE-CCCCCCCCCCCCeeEEEecc Q psy2408 87 TKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLH-GDALNLPFDNDSFDGGWFFE 164 (298) Q Consensus 87 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fD~V~~~~ 164 (298) .++.+||-.|+|. |..+..+++..|+++++++.+++....+.+. .|.. .++. .+...+.-....+|+|+-. T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~---~Ga~---~~i~~~~~~~~~~~~~~~D~vid~- 251 (357) T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEH---LGAD---DYLVSSDAAEMQEAADSLDYIIDT- 251 (357) T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh---cCCc---EEecCCChHHHHHhcCCCcEEEEC- Confidence 5788999888775 7777777887788899998887655544332 2321 1111 1111110001247877532 Q ss_pred cccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 165 SIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 165 ~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) ......+..+.+.|+++|+++.... T Consensus 252 ----~g~~~~~~~~~~~l~~~G~iv~~G~ 276 (357) T PLN02514 252 ----VPVFHPLEPYLSLLKLDGKLILMGV 276 (357) T ss_pred ----CCchHHHHHHHHHhccCCEEEEECC Confidence 2323567778889999999887654 No 374 >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu Probab=92.84 E-value=0.24 Score=43.72 Aligned_cols=100 Identities=21% Similarity=0.263 Sum_probs=63.8 Q ss_pred HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----CCCC Q psy2408 82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----PFDN 154 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~ 154 (298) ....+.++.+||-.|+|. |..+..+++..|. .++++|.++...+.+++. +.. .++..+-..+ .... T Consensus 180 ~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g~~---~~i~~~~~~~~~~v~~~~~ 252 (365) T cd08278 180 NVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----GAT---HVINPKEEDLVAAIREITG 252 (365) T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCc---EEecCCCcCHHHHHHHHhC Confidence 344567889999998865 6777777777787 699999998877766543 221 2222111111 0113 Q ss_pred CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) ..+|+|+-.. .....+..+.+.|+++|+++.... T Consensus 253 ~~~d~vld~~-----g~~~~~~~~~~~l~~~G~~v~~g~ 286 (365) T cd08278 253 GGVDYALDTT-----GVPAVIEQAVDALAPRGTLALVGA 286 (365) T ss_pred CCCcEEEECC-----CCcHHHHHHHHHhccCCEEEEeCc Confidence 4688886432 222467788899999999887543 No 375 >TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. Probab=92.83 E-value=0.18 Score=44.50 Aligned_cols=101 Identities=15% Similarity=0.082 Sum_probs=56.9 Q ss_pred CCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc Q psy2408 88 KGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI 166 (298) Q Consensus 88 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 166 (298) ++.+|+=+|+|. |..+...+...|++|+++|.++..++.+...+ + ..+.....+...+.---..+|+|+..-.. T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370) T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370) T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHHHHHHHccCCEEEEcccc Confidence 346799999985 66677777767889999999987666554332 1 11111111111111001468999864322 Q ss_pred cccChH-HHHHHHhhcccCCcEEEEEeC Q psy2408 167 FHMNHS-AALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 167 ~~~~~~-~~l~~~~r~LkpgG~l~i~~~ 193 (298) .-.+.+ -+-++..+.++|++.++-... T Consensus 241 ~g~~~p~lit~~~l~~mk~g~vIvDva~ 268 (370) T TIGR00518 241 PGAKAPKLVSNSLVAQMKPGAVIVDVAI 268 (370) T ss_pred CCCCCCcCcCHHHHhcCCCCCEEEEEec Confidence 111222 223555677899987665443 No 376 >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. Probab=92.65 E-value=1.9 Score=38.55 Aligned_cols=106 Identities=15% Similarity=0.096 Sum_probs=65.4 Q ss_pred HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC---CCCC-C-C-CC Q psy2408 82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHG---DALN-L-P-FD 153 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~---d~~~-~-~-~~ 153 (298) ....+.++.+||=.|+|. |..+..+++..|++ ++.+|.++..++.+++. |.. .+... +..+ + . .. T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga~---~v~~~~~~~~~~~v~~~~~ 251 (393) T TIGR02819 179 VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GCE---TVDLSKDATLPEQIEQILG 251 (393) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CCe---EEecCCcccHHHHHHHHcC Confidence 345667888998888875 77777777767775 56678888878877653 321 12111 1111 1 0 12 Q ss_pred CCCeeEEEecccccc--------cChH-HHHHHHhhcccCCcEEEEEeCC Q psy2408 154 NDSFDGGWFFESIFH--------MNHS-AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 154 ~~~fD~V~~~~~l~~--------~~~~-~~l~~~~r~LkpgG~l~i~~~~ 194 (298) ...+|+|+-.-.... -.++ ..+++..+++++||++++.... T Consensus 252 ~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393) T TIGR02819 252 EPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393) T ss_pred CCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec Confidence 246898874322110 0122 5788899999999999987654 No 377 >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing Probab=92.59 E-value=0.58 Score=39.02 Aligned_cols=76 Identities=18% Similarity=0.161 Sum_probs=49.0 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK------GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA 147 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~------~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~ 147 (298) ..+...+.+.--+.+...++|+|||.|.++.++++.. ...++.||-..... .+-..+........+.-+..|+ T Consensus 4 sSli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI 82 (259) T PF05206_consen 4 SSLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDI 82 (259) T ss_pred HHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEe Confidence 3455555555555678899999999999999999864 25789999855332 2233333322112355666677 Q ss_pred CCC Q psy2408 148 LNL 150 (298) Q Consensus 148 ~~~ 150 (298) .++ T Consensus 83 ~dl 85 (259) T PF05206_consen 83 KDL 85 (259) T ss_pred ecc Confidence 665 No 378 >cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall Probab=92.49 E-value=0.28 Score=42.64 Aligned_cols=97 Identities=16% Similarity=0.226 Sum_probs=60.6 Q ss_pred CCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCCCC Q psy2408 84 TSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFDND 155 (298) Q Consensus 84 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~ 155 (298) ..+.++.+||-.|+|. |..+..+++..|. .+++++.++...+.+++. +.. .++...-..+ ..+.+ T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~---~vi~~~~~~~~~~i~~~~~~~ 235 (347) T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GAT---DIINPKNGDIVEQILELTGGR 235 (347) T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCc---EEEcCCcchHHHHHHHHcCCC Confidence 4556788999987763 6667777776775 788998888777666543 211 1221111111 01235 Q ss_pred CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) .+|+++... .....+....+.|+++|+++... T Consensus 236 ~~d~vld~~-----g~~~~~~~~~~~l~~~G~~v~~g 267 (347) T cd05278 236 GVDCVIEAV-----GFEETFEQAVKVVRPGGTIANVG 267 (347) T ss_pred CCcEEEEcc-----CCHHHHHHHHHHhhcCCEEEEEc Confidence 689887532 11147778889999999988654 No 379 >PLN02178 cinnamyl-alcohol dehydrogenase Probab=92.07 E-value=1.1 Score=39.64 Aligned_cols=95 Identities=25% Similarity=0.178 Sum_probs=58.2 Q ss_pred CCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHH-HHHHHHHHHhcCCCCceEEEEC-CCCCCCCCCCCeeEEEec Q psy2408 87 TKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQ-QESAMKTAKAEGLLDKVNFLHG-DALNLPFDNDSFDGGWFF 163 (298) Q Consensus 87 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~-l~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~fD~V~~~ 163 (298) .++.+||-.|+|. |..+..+++..|+++++++.+++. .+.++ ..|.. .++.. +...+.-..+.+|+|+-. T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~----~lGa~---~~i~~~~~~~v~~~~~~~D~vid~ 249 (375) T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAID----RLGAD---SFLVTTDSQKMKEAVGTMDFIIDT 249 (375) T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHH----hCCCc---EEEcCcCHHHHHHhhCCCcEEEEC Confidence 4788999999875 777777788779999999987543 33332 23331 12211 100110001247877642 Q ss_pred ccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 164 ESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 164 ~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) ...+..+....+.++++|+++.... T Consensus 250 -----~G~~~~~~~~~~~l~~~G~iv~vG~ 274 (375) T PLN02178 250 -----VSAEHALLPLFSLLKVSGKLVALGL 274 (375) T ss_pred -----CCcHHHHHHHHHhhcCCCEEEEEcc Confidence 2233567788899999999987654 No 380 >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). Probab=92.00 E-value=3.9 Score=31.50 Aligned_cols=107 Identities=12% Similarity=0.128 Sum_probs=66.1 Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC Q psy2408 71 QGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL 150 (298) Q Consensus 71 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~ 150 (298) .....+++.+.+.. .++.+|+-|||=+-.....-....+.++..+|++...-. .+ ++ .|+.-|.... T Consensus 10 ~T~~~l~~~l~~~~--~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~--------~~--~~-~F~fyD~~~p 76 (162) T PF10237_consen 10 ETAEFLARELLDGA--LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQ--------FG--GD-EFVFYDYNEP 76 (162) T ss_pred HHHHHHHHHHHHhc--CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHh--------cC--Cc-ceEECCCCCh Confidence 45566666666554 356799999997744433331124678999999864332 11 23 4666676653 Q ss_pred -CCC---CCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEe Q psy2408 151 -PFD---NDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTD 192 (298) Q Consensus 151 -~~~---~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~ 192 (298) .++ .++||+|++---+ +... .+...+.-++++++.+++.. T Consensus 77 ~~~~~~l~~~~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162) T PF10237_consen 77 EELPEELKGKFDVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILCT 123 (162) T ss_pred hhhhhhcCCCceEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEec Confidence 111 4799999986555 3343 45556666668888888763 No 381 >PRK10458 DNA cytosine methylase; Provisional Probab=91.97 E-value=3.9 Score=37.31 Aligned_cols=58 Identities=17% Similarity=0.118 Sum_probs=40.3 Q ss_pred CCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC Q psy2408 89 GQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL 150 (298) Q Consensus 89 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~ 150 (298) ..+++|+-||.|.+..-+-. .|. .|.++|+++...+.-+.++... +.......|+.++ T Consensus 88 ~~~~iDLFsGiGGl~lGfe~-aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i 146 (467) T PRK10458 88 AFRFIDLFAGIGGIRRGFEA-IGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDI 146 (467) T ss_pred CceEEEeCcCccHHHHHHHH-cCCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhC Confidence 56999999999999988876 454 6788999987777666554211 1234455666655 No 382 >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown. Probab=91.95 E-value=3.6 Score=33.04 Aligned_cols=102 Identities=17% Similarity=0.049 Sum_probs=64.4 Q ss_pred CCCeEEEeCCCCCH--HHHHHH--Hh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-CCCCCCCeeEEE Q psy2408 88 KGQRFIDIGCGFGL--SGIRLA--KA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-LPFDNDSFDGGW 161 (298) Q Consensus 88 ~~~~vLDiGcG~G~--~~~~l~--~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~V~ 161 (298) ....++++.|+.|. .++.|+ .+ .|.++++|-+++..+...++.+...++.+.++|+.++..+ +-..-...|.++ T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~v 120 (218) T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVV 120 (218) T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEE Confidence 34578888665432 344443 32 4889999999999988888888888887778999888533 211124688876 Q ss_pred ecccccccChHHHHHHHhhcc--cCCcEEEEEeCC Q psy2408 162 FFESIFHMNHSAALNEARRVL--KSGSILTLTDLP 194 (298) Q Consensus 162 ~~~~l~~~~~~~~l~~~~r~L--kpgG~l~i~~~~ 194 (298) ...-.. ++.+++.+++ .|.|.+++.... T Consensus 121 VDc~~~-----d~~~~vl~~~~~~~~GaVVV~~Na 150 (218) T PF07279_consen 121 VDCKRE-----DFAARVLRAAKLSPRGAVVVCYNA 150 (218) T ss_pred EeCCch-----hHHHHHHHHhccCCCceEEEEecc Confidence 533221 3333444444 456776665443 No 383 >TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). Probab=91.89 E-value=1.4 Score=39.40 Aligned_cols=101 Identities=16% Similarity=0.129 Sum_probs=63.0 Q ss_pred HHHHHHHhCCC-CCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC Q psy2408 76 LSRIMINKTSI-TKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD 153 (298) Q Consensus 76 ~~~~l~~~~~~-~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 153 (298) ..+.+++..++ -.|.+|+-+|+|. |......++..|++|+++|.++.....+.. .| ..+. +..+. . T Consensus 181 ~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~----~G----~~v~--~leea-l- 248 (406) T TIGR00936 181 TIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM----DG----FRVM--TMEEA-A- 248 (406) T ss_pred HHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh----cC----CEeC--CHHHH-H- Confidence 34445544332 4788999999997 777777777679999999998864433321 12 1121 22221 1 Q ss_pred CCCeeEEEecccccccChHHHHH-HHhhcccCCcEEEEEeCC Q psy2408 154 NDSFDGGWFFESIFHMNHSAALN-EARRVLKSGSILTLTDLP 194 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~~~~~~l~-~~~r~LkpgG~l~i~~~~ 194 (298) ...|+|+.. ...+..+. +....+|+|++++..... T Consensus 249 -~~aDVVIta-----TG~~~vI~~~~~~~mK~GailiN~G~~ 284 (406) T TIGR00936 249 -KIGDIFITA-----TGNKDVIRGEHFENMKDGAIVANIGHF 284 (406) T ss_pred -hcCCEEEEC-----CCCHHHHHHHHHhcCCCCcEEEEECCC Confidence 346888653 23344554 488899999988876544 No 384 >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... Probab=91.87 E-value=1.4 Score=34.70 Aligned_cols=88 Identities=15% Similarity=0.154 Sum_probs=53.7 Q ss_pred CeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCC--CCceEEEECCCCCC---------CCCCCCe Q psy2408 90 QRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGL--LDKVNFLHGDALNL---------PFDNDSF 157 (298) Q Consensus 90 ~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~i~~~~~d~~~~---------~~~~~~f 157 (298) ..|+.+|||.=.....+.... +.++.-+|. ++.++.-++.++..+. +.+.+++..|+.+. .+..+.. T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p 158 (183) T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP 158 (183) T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC Confidence 499999999988888887754 556777776 4455555555554321 12356799998862 1334566 Q ss_pred eEEEecccccccChH---HHHHHH Q psy2408 158 DGGWFFESIFHMNHS---AALNEA 178 (298) Q Consensus 158 D~V~~~~~l~~~~~~---~~l~~~ 178 (298) -++++-+++.+++.. .+++.+ T Consensus 159 tl~i~Egvl~Yl~~~~~~~ll~~i 182 (183) T PF04072_consen 159 TLFIAEGVLMYLSPEQVDALLRAI 182 (183) T ss_dssp EEEEEESSGGGS-HHHHHHHHHHH T ss_pred eEEEEcchhhcCCHHHHHHHHHHh Confidence 788888889999876 555543 No 385 >PRK11524 putative methyltransferase; Provisional Probab=91.82 E-value=0.15 Score=43.33 Aligned_cols=53 Identities=23% Similarity=0.272 Sum_probs=37.3 Q ss_pred ceEEEECCCCCC--CCCCCCeeEEEeccccc----------------ccChH-HHHHHHhhcccCCcEEEEE Q psy2408 139 KVNFLHGDALNL--PFDNDSFDGGWFFESIF----------------HMNHS-AALNEARRVLKSGSILTLT 191 (298) Q Consensus 139 ~i~~~~~d~~~~--~~~~~~fD~V~~~~~l~----------------~~~~~-~~l~~~~r~LkpgG~l~i~ 191 (298) +..++++|+.+. .+++++||+|++.=-.. +..-. ..+.++.|+|||||.+++. T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284) T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284) T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE Confidence 356788888774 45678899998842211 00111 6889999999999999985 No 386 >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall Probab=91.75 E-value=0.61 Score=41.08 Aligned_cols=105 Identities=23% Similarity=0.303 Sum_probs=64.0 Q ss_pred HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC--CCCC-C-CCCC Q psy2408 81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHG--DALN-L-PFDN 154 (298) Q Consensus 81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~--d~~~-~-~~~~ 154 (298) .....+.++.+||=.|+|. |..+..+++..|.. +++++.++...+.+++. +...-+..... +... + .... T Consensus 176 ~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~~~l~~~~~ 251 (365) T cd05279 176 VNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQL----GATECINPRDQDKPIVEVLTEMTD 251 (365) T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCCeecccccccchHHHHHHHHhC Confidence 3455677889999998764 66666677767774 88899888887777442 32111111111 1100 0 0112 Q ss_pred CCeeEEEecccccccChHHHHHHHhhccc-CCcEEEEEeCC Q psy2408 155 DSFDGGWFFESIFHMNHSAALNEARRVLK-SGSILTLTDLP 194 (298) Q Consensus 155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~Lk-pgG~l~i~~~~ 194 (298) +.+|+|+-. ......+....+.|+ ++|+++..... T Consensus 252 ~~~d~vid~-----~g~~~~~~~~~~~l~~~~G~~v~~g~~ 287 (365) T cd05279 252 GGVDYAFEV-----IGSADTLKQALDATRLGGGTSVVVGVP 287 (365) T ss_pred CCCcEEEEC-----CCCHHHHHHHHHHhccCCCEEEEEecC Confidence 468888642 223356777888899 99998876543 No 387 >KOG0023|consensus Probab=91.49 E-value=0.82 Score=38.96 Aligned_cols=103 Identities=25% Similarity=0.303 Sum_probs=64.3 Q ss_pred HHhCCCCCCCeEEEeCCC-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC--CCC---C-CCC Q psy2408 81 INKTSITKGQRFIDIGCG-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD--ALN---L-PFD 153 (298) Q Consensus 81 ~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d--~~~---~-~~~ 153 (298) +...++.||++|--+|.| -|.++..+++.+|.+|+++|-+..--+.+-+. .|-+ .|+..- -.. + ..- T Consensus 174 Lk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~---LGAd---~fv~~~~d~d~~~~~~~~~ 247 (360) T KOG0023|consen 174 LKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKS---LGAD---VFVDSTEDPDIMKAIMKTT 247 (360) T ss_pred hHHcCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHh---cCcc---eeEEecCCHHHHHHHHHhh Confidence 345566799888777765 59999999998999999999987444444333 2322 122211 110 0 011 Q ss_pred CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCC Q psy2408 154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLL 196 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 196 (298) +.-.|.|... ....+..+.++||++|.+++...... T Consensus 248 dg~~~~v~~~-------a~~~~~~~~~~lk~~Gt~V~vg~p~~ 283 (360) T KOG0023|consen 248 DGGIDTVSNL-------AEHALEPLLGLLKVNGTLVLVGLPEK 283 (360) T ss_pred cCcceeeeec-------cccchHHHHHHhhcCCEEEEEeCcCC Confidence 3344444422 11456678889999999999876644 No 388 >cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me Probab=91.48 E-value=0.66 Score=40.82 Aligned_cols=101 Identities=19% Similarity=0.270 Sum_probs=63.7 Q ss_pred HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CC Q psy2408 81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PF 152 (298) Q Consensus 81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~ 152 (298) .....+.++.+||-.|+|. |..+..+++..|.. |++++.++...+.+++. +. ..++...-..+ .. T Consensus 175 ~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~----g~---~~vv~~~~~~~~~~l~~~~ 247 (363) T cd08279 175 VNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRF----GA---THTVNASEDDAVEAVRDLT 247 (363) T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHh----CC---eEEeCCCCccHHHHHHHHc Confidence 3445667888999998763 66677777777885 99999988877766432 32 12222211111 01 Q ss_pred CCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 153 ~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) +...+|+++... .....+..+.+.|+++|+++.... T Consensus 248 ~~~~vd~vld~~-----~~~~~~~~~~~~l~~~G~~v~~g~ 283 (363) T cd08279 248 DGRGADYAFEAV-----GRAATIRQALAMTRKGGTAVVVGM 283 (363) T ss_pred CCCCCCEEEEcC-----CChHHHHHHHHHhhcCCeEEEEec Confidence 235689886422 222567788999999999887643 No 389 >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( Probab=91.44 E-value=1.6 Score=37.94 Aligned_cols=101 Identities=21% Similarity=0.247 Sum_probs=62.1 Q ss_pred HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC----CCCCCCCC Q psy2408 82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA----LNLPFDND 155 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~----~~~~~~~~ 155 (298) ....+.++.+||=.|+|. |..+..+++..| .++++++.++.....+++. +...-+.....+. ..+ .+.. T Consensus 160 ~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~i~~~-~~~~ 234 (345) T cd08286 160 LNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKL----GATHTVNSAKGDAIEQVLEL-TDGR 234 (345) T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCceeccccccHHHHHHHH-hCCC Confidence 344567888888888764 555666677678 7899999988776666532 3211111111111 111 1234 Q ss_pred CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) .+|+|+.. ......+..+.+.|+++|+++... T Consensus 235 ~~d~vld~-----~g~~~~~~~~~~~l~~~g~~v~~g 266 (345) T cd08286 235 GVDVVIEA-----VGIPATFELCQELVAPGGHIANVG 266 (345) T ss_pred CCCEEEEC-----CCCHHHHHHHHHhccCCcEEEEec Confidence 68988643 233456788889999999988654 No 390 >KOG2352|consensus Probab=91.27 E-value=0.46 Score=42.69 Aligned_cols=110 Identities=15% Similarity=0.076 Sum_probs=74.1 Q ss_pred CCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-------CCCCCCeeE Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-------PFDNDSFDG 159 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-------~~~~~~fD~ 159 (298) .+..+|-+|-|.|.+...+.... ..++++|++.+.++..+...+.-..- .+..+...|..+. .-.+..||+ T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482) T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482) T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE Confidence 34578888989899988887765 47999999999999999988653221 1233444443321 123567898 Q ss_pred EEe----ccccccc--ChH-----HHHHHHhhcccCCcEEEEEeCCCCCCC Q psy2408 160 GWF----FESIFHM--NHS-----AALNEARRVLKSGSILTLTDLPLLSVS 199 (298) Q Consensus 160 V~~----~~~l~~~--~~~-----~~l~~~~r~LkpgG~l~i~~~~~~~~~ 199 (298) ++. .. .+-+ +.+ .+|..+..+|.|.|.++|.-....... T Consensus 374 l~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~ 423 (482) T KOG2352|consen 374 LMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSF 423 (482) T ss_pred EEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcch Confidence 874 12 2222 222 888999999999999988766544433 No 391 >PLN02494 adenosylhomocysteinase Probab=91.27 E-value=0.84 Score=41.37 Aligned_cols=100 Identities=19% Similarity=0.149 Sum_probs=62.6 Q ss_pred HHHHHHHhCCC-CCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC Q psy2408 76 LSRIMINKTSI-TKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD 153 (298) Q Consensus 76 ~~~~l~~~~~~-~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 153 (298) ..+.+++...+ -.|.+|+-+|+|. |......++..|++|+++|.++.....+... + ..+. +..+. . T Consensus 240 ~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~----G----~~vv--~leEa-l- 307 (477) T PLN02494 240 LPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALME----G----YQVL--TLEDV-V- 307 (477) T ss_pred HHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhc----C----Ceec--cHHHH-H- Confidence 35555555444 4689999999996 6666666665789999999988644333211 2 1111 22221 1 Q ss_pred CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeC Q psy2408 154 NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~ 193 (298) ...|+|+.. .... -+..+....+|+||.|+.... T Consensus 308 -~~ADVVI~t-----TGt~~vI~~e~L~~MK~GAiLiNvGr 342 (477) T PLN02494 308 -SEADIFVTT-----TGNKDIIMVDHMRKMKNNAIVCNIGH 342 (477) T ss_pred -hhCCEEEEC-----CCCccchHHHHHhcCCCCCEEEEcCC Confidence 357888762 1222 334778889999999887644 No 392 >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional Probab=91.26 E-value=1.6 Score=39.25 Aligned_cols=89 Identities=17% Similarity=0.094 Sum_probs=57.1 Q ss_pred CCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc Q psy2408 88 KGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI 166 (298) Q Consensus 88 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 166 (298) .+.+|+-+|+|. |......++..|++|+.+|.++.....+.. .| ..+ .++.+. . ..+|+|+..- T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~----~G----~~v--~~l~ea-l--~~aDVVI~aT-- 275 (425) T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM----DG----FRV--MTMEEA-A--ELGDIFVTAT-- 275 (425) T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh----cC----CEe--cCHHHH-H--hCCCEEEECC-- Confidence 788999999996 666555566578999999999865433321 12 121 122221 1 3689887632 Q ss_pred cccChHHHHH-HHhhcccCCcEEEEEeCC Q psy2408 167 FHMNHSAALN-EARRVLKSGSILTLTDLP 194 (298) Q Consensus 167 ~~~~~~~~l~-~~~r~LkpgG~l~i~~~~ 194 (298) .....+. .....+|+|+.++..... T Consensus 276 ---G~~~vI~~~~~~~mK~GailiNvG~~ 301 (425) T PRK05476 276 ---GNKDVITAEHMEAMKDGAILANIGHF 301 (425) T ss_pred ---CCHHHHHHHHHhcCCCCCEEEEcCCC Confidence 3334554 678899999988776443 No 393 >PRK08306 dipicolinate synthase subunit A; Reviewed Probab=91.20 E-value=2 Score=36.76 Aligned_cols=127 Identities=17% Similarity=0.176 Sum_probs=74.5 Q ss_pred HHhCCCC-CCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCee Q psy2408 81 INKTSIT-KGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFD 158 (298) Q Consensus 81 ~~~~~~~-~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 158 (298) ++..... .+.+|+=+|+|. |......++..|++|+++|.++...+.++. .+ ..++. ..++.---..+| T Consensus 143 ~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~----~G----~~~~~--~~~l~~~l~~aD 212 (296) T PRK08306 143 IEHTPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE----MG----LSPFH--LSELAEEVGKID 212 (296) T ss_pred HHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cC----Ceeec--HHHHHHHhCCCC Confidence 3443333 578999999985 555555555578999999999876555432 22 22221 111111124689 Q ss_pred EEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEE Q psy2408 159 GGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKID 238 (298) Q Consensus 159 ~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 238 (298) +|+..- +..-+-++....++|++.++-....... . ++ ...++.|-..+-.. T Consensus 213 iVI~t~-----p~~~i~~~~l~~~~~g~vIIDla~~pgg--t---------------------d~-~~a~~~Gv~~~~~~ 263 (296) T PRK08306 213 IIFNTI-----PALVLTKEVLSKMPPEALIIDLASKPGG--T---------------------DF-EYAEKRGIKALLAP 263 (296) T ss_pred EEEECC-----ChhhhhHHHHHcCCCCcEEEEEccCCCC--c---------------------Ce-eehhhCCeEEEEEC Confidence 998742 2223345666778898765543222111 1 11 24577888887778 Q ss_pred eCCCCccc Q psy2408 239 DITSHVMP 246 (298) Q Consensus 239 ~~~~~~~~ 246 (298) .++..+.+ T Consensus 264 ~lpg~vap 271 (296) T PRK08306 264 GLPGKVAP 271 (296) T ss_pred CCCccCCH Confidence 88887754 No 394 >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated Probab=90.77 E-value=5.9 Score=33.52 Aligned_cols=144 Identities=18% Similarity=0.127 Sum_probs=76.4 Q ss_pred eEEEeCCCC--CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHH-------HhcCC-C--------CceEEEECCCCCCCC Q psy2408 91 RFIDIGCGF--GLSGIRLAKAKGCRVDGITISKFQQESAMKTA-------KAEGL-L--------DKVNFLHGDALNLPF 152 (298) Q Consensus 91 ~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~-------~~~~~-~--------~~i~~~~~d~~~~~~ 152 (298) +|-=||+|. +.++..++. .|.+|+++|++++.++.++.++ .+.+. . .++.+ ..|... T Consensus 5 kI~VIG~G~mG~~ia~~la~-~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~--- 79 (282) T PRK05808 5 KIGVIGAGTMGNGIAQVCAV-AGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD--- 79 (282) T ss_pred EEEEEccCHHHHHHHHHHHH-CCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH--- Confidence 577788875 333444444 5789999999999987665432 22221 1 02221 233222 Q ss_pred CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh---hcccCC----------- Q psy2408 153 DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK---NIHSNF----------- 217 (298) Q Consensus 153 ~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~----------- 217 (298) -...|+|+.. +-+...-. .+++++.+.++|+..+ ++..+-. + .......... ....++ T Consensus 80 -~~~aDlVi~a-v~e~~~~k~~~~~~l~~~~~~~~il-~s~ts~~---~-~~~la~~~~~~~r~ig~h~~~P~~~~~~ve 152 (282) T PRK05808 80 -LKDADLVIEA-ATENMDLKKKIFAQLDEIAKPEAIL-ATNTSSL---S-ITELAAATKRPDKVIGMHFFNPVPVMKLVE 152 (282) T ss_pred -hccCCeeeec-ccccHHHHHHHHHHHHhhCCCCcEE-EECCCCC---C-HHHHHHhhCCCcceEEeeccCCcccCccEE Confidence 1457887643 12222223 8888999999988765 4333311 1 1112111110 000011 Q ss_pred ---------CCcchHHHHHHhCCCcEEEEEeCCCCccc Q psy2408 218 ---------ILVEHYPDLLNKSGFELIKIDDITSHVMP 246 (298) Q Consensus 218 ---------~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~ 246 (298) -..+....+++..|..++.+.+.+..+.. T Consensus 153 v~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g~i~~ 190 (282) T PRK05808 153 IIRGLATSDATHEAVEALAKKIGKTPVEVKNAPGFVVN 190 (282) T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccChHHH Confidence 11245567889999998888666555544 No 395 >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed Probab=90.74 E-value=4.4 Score=39.25 Aligned_cols=97 Identities=14% Similarity=0.007 Sum_probs=61.4 Q ss_pred CCeEEEeCCCC-CH-HHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc-------C-CC--------CceEEEECCCCCC Q psy2408 89 GQRFIDIGCGF-GL-SGIRLAKAKGCRVDGITISKFQQESAMKTAKAE-------G-LL--------DKVNFLHGDALNL 150 (298) Q Consensus 89 ~~~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~ 150 (298) -.+|.-||+|+ |. ++..++...|..|+.+|.+++.++.+..++... + +. .++++. .|...+ T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~ 387 (708) T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRGF 387 (708) T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHHh Confidence 36899999998 33 333344246899999999999998887654421 1 10 133332 222211 Q ss_pred CCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEE Q psy2408 151 PFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLT 191 (298) Q Consensus 151 ~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~ 191 (298) ...|+|+= .+.+.+.-. ++++++.++++|+..|.-. T Consensus 388 ----~~aDlViE-av~E~~~~K~~v~~~le~~~~~~~ilasn 424 (708) T PRK11154 388 ----KHADVVIE-AVFEDLALKQQMVAEVEQNCAPHTIFASN 424 (708) T ss_pred ----ccCCEEee-cccccHHHHHHHHHHHHhhCCCCcEEEEC Confidence 45777753 244444445 9999999999999776543 No 396 >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu Probab=90.72 E-value=4.9 Score=35.35 Aligned_cols=97 Identities=19% Similarity=0.205 Sum_probs=60.1 Q ss_pred CCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCCCC Q psy2408 84 TSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFDND 155 (298) Q Consensus 84 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~ 155 (298) ..+.++.+||-.|+|. |..+..+++..|.. +++++.+++..+.+++. +.. .++..+-..+ ..+.. T Consensus 183 ~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~----g~~---~v~~~~~~~~~~~l~~~~~~~ 255 (367) T cd08263 183 ADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKEL----GAT---HTVNAAKEDAVAAIREITGGR 255 (367) T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCc---eEecCCcccHHHHHHHHhCCC Confidence 3446788888877653 66666667767877 99999988877766432 321 2222211111 11235 Q ss_pred CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) .+|+|+.. +.....+..+.+.|+++|+++... T Consensus 256 ~~d~vld~-----vg~~~~~~~~~~~l~~~G~~v~~g 287 (367) T cd08263 256 GVDVVVEA-----LGKPETFKLALDVVRDGGRAVVVG 287 (367) T ss_pred CCCEEEEe-----CCCHHHHHHHHHHHhcCCEEEEEc Confidence 68988743 222236777889999999988764 No 397 >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] Probab=90.70 E-value=2.9 Score=36.33 Aligned_cols=121 Identities=12% Similarity=0.055 Sum_probs=74.0 Q ss_pred CCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC---CCCCCeeEEEecc Q psy2408 89 GQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP---FDNDSFDGGWFFE 164 (298) Q Consensus 89 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V~~~~ 164 (298) ..+++|+-||.|.+..-+.. .|. -+.++|+++..++.-+.++.. ..+...|+..+. ++...+|+++... T Consensus 3 ~~~~idLFsG~GG~~lGf~~-agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328) T COG0270 3 KMKVIDLFAGIGGLSLGFEE-AGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328) T ss_pred CceEEeeccCCchHHHHHHh-cCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCC Confidence 35899999999999977777 454 688999999888887777542 345666766542 1111789998754 Q ss_pred ccccc---------ChH--HHH---HHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhC Q psy2408 165 SIFHM---------NHS--AAL---NEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKS 230 (298) Q Consensus 165 ~l~~~---------~~~--~~l---~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (298) -.+.+ .|+ .++ .++...++| .+++.+-+. ..... .-...+.+...|++. T Consensus 76 PCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~-------gl~~~--------~~~~~~~i~~~L~~~ 138 (328) T COG0270 76 PCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVK-------GLLSS--------KGQTFDEIKKELEEL 138 (328) T ss_pred CCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCc-------hHHhc--------CchHHHHHHHHHHHc Confidence 44333 233 333 344445567 334433331 11111 222456777888888 Q ss_pred CCc Q psy2408 231 GFE 233 (298) Q Consensus 231 Gf~ 233 (298) ||. T Consensus 139 GY~ 141 (328) T COG0270 139 GYG 141 (328) T ss_pred CCc Confidence 886 No 398 >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional Probab=90.47 E-value=7.1 Score=31.68 Aligned_cols=102 Identities=22% Similarity=0.207 Sum_probs=62.6 Q ss_pred CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----C-----CC Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----F-----DN 154 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~ 154 (298) .+.+||-.|++ |.++..+++. .|.+|++++.+++..+......... .++.++.+|+.+.. + .- T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238) T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238) T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh Confidence 35689988875 5555555554 4789999999987766554444332 25788889887631 0 01 Q ss_pred CCeeEEEeccccccc-----------------ChH-HHHHHHhhcccCCcEEEEEeC Q psy2408 155 DSFDGGWFFESIFHM-----------------NHS-AALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 155 ~~fD~V~~~~~l~~~-----------------~~~-~~l~~~~r~LkpgG~l~i~~~ 193 (298) +.+|.++.+...... ..+ .+++.+.+.++++|.+++... T Consensus 80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238) T PRK05786 80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238) T ss_pred CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec Confidence 356877765443211 111 345666667777887776543 No 399 >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. Probab=90.22 E-value=3.6 Score=39.88 Aligned_cols=146 Identities=15% Similarity=0.132 Sum_probs=83.7 Q ss_pred CCeEEEeCCCC-CHH-HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-------cC-CC--------CceEEEECCCCCC Q psy2408 89 GQRFIDIGCGF-GLS-GIRLAKAKGCRVDGITISKFQQESAMKTAKA-------EG-LL--------DKVNFLHGDALNL 150 (298) Q Consensus 89 ~~~vLDiGcG~-G~~-~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~-------~~-~~--------~~i~~~~~d~~~~ 150 (298) -.+|--||+|+ |.- +..++. .|..|+.+|.+++.++.++.++.. .+ +. .++++. .|... T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~-~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~- 389 (714) T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSAS-KGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAG- 389 (714) T ss_pred cceEEEECCchHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH- Confidence 35789999997 333 333333 589999999999999887766541 11 00 123221 22211 Q ss_pred CCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh---hcc------------ Q psy2408 151 PFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK---NIH------------ 214 (298) Q Consensus 151 ~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~---~~~------------ 214 (298) + ...|+|+= .+.+.+.-. ++++++.++++|+..|.-.+....- ......... ... T Consensus 390 -~--~~aDlViE-av~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i-----~~ia~~~~~p~r~ig~Hff~P~~~~~l 460 (714) T TIGR02437 390 -F--DNVDIVVE-AVVENPKVKAAVLAEVEQHVREDAILASNTSTISI-----SLLAKALKRPENFCGMHFFNPVHRMPL 460 (714) T ss_pred -h--cCCCEEEE-cCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH-----HHHHhhcCCcccEEEEecCCCcccCce Confidence 1 45777753 245555555 9999999999999766543332111 111111000 000 Q ss_pred ----cCCCC----cchHHHHHHhCCCcEEEEEeCCCCccc Q psy2408 215 ----SNFIL----VEHYPDLLNKSGFELIKIDDITSHVMP 246 (298) Q Consensus 215 ----~~~~~----~~~~~~~l~~~Gf~~~~~~~~~~~~~~ 246 (298) +...| .+...+++++.|...+.+.+.+..+.+ T Consensus 461 vEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGfi~N 500 (714) T TIGR02437 461 VEVIRGEKSSDETIATVVAYASKMGKTPIVVNDCPGFFVN 500 (714) T ss_pred EeecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCcccchHH Confidence 01112 344567788899999988877666655 No 400 >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed Probab=90.04 E-value=3.4 Score=40.06 Aligned_cols=146 Identities=16% Similarity=0.122 Sum_probs=83.4 Q ss_pred CeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-------cC-C--------CCceEEEECCCCCCCC Q psy2408 90 QRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKA-------EG-L--------LDKVNFLHGDALNLPF 152 (298) Q Consensus 90 ~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~-------~~-~--------~~~i~~~~~d~~~~~~ 152 (298) .+|.-||+|+ |.-...+....|..|+.+|.+++.++.+..++.. .+ + ..++++. .|...+ T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~-- 390 (715) T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF-- 390 (715) T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh-- Confidence 5799999998 4333333333689999999999999887766432 11 1 0133322 233222 Q ss_pred CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh---hcc-------------- Q psy2408 153 DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK---NIH-------------- 214 (298) Q Consensus 153 ~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~---~~~-------------- 214 (298) ...|+|+= .+.+.+.-. ++++++.++++|+..|.-.+...+- ......... ... T Consensus 391 --~~aDlViE-av~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i-----~~la~~~~~p~r~~g~Hff~P~~~~~lVE 462 (715) T PRK11730 391 --ERVDVVVE-AVVENPKVKAAVLAEVEQKVREDTILASNTSTISI-----SLLAKALKRPENFCGMHFFNPVHRMPLVE 462 (715) T ss_pred --cCCCEEEe-cccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH-----HHHHhhcCCCccEEEEecCCcccccceEE Confidence 45677652 234444445 9999999999999766443332211 111111000 000 Q ss_pred --cCCC----CcchHHHHHHhCCCcEEEEEeCCCCccc Q psy2408 215 --SNFI----LVEHYPDLLNKSGFELIKIDDITSHVMP 246 (298) Q Consensus 215 --~~~~----~~~~~~~~l~~~Gf~~~~~~~~~~~~~~ 246 (298) .... +.+...++++..|...+.+.+.+..+.+ T Consensus 463 vv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGfv~n 500 (715) T PRK11730 463 VIRGEKTSDETIATVVAYASKMGKTPIVVNDCPGFFVN 500 (715) T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCceEEecCcCchhHH Confidence 1111 2345567788999999988877766655 No 401 >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic Probab=89.88 E-value=4.1 Score=35.33 Aligned_cols=100 Identities=25% Similarity=0.270 Sum_probs=61.2 Q ss_pred HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-CCCCCCeeE Q psy2408 82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-PFDNDSFDG 159 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~ 159 (298) ..+.+.++.+||=.|||. |..+..+++..|.++++++.+++..+.++.. +.. .++...-... ....+.+|+ T Consensus 163 ~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~d~ 235 (337) T cd05283 163 KRNGVGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKL----GAD---EFIATKDPEAMKKAAGSLDL 235 (337) T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHc----CCc---EEecCcchhhhhhccCCceE Confidence 345567888888888764 6666666776788999999998877776432 221 1111110110 011356888 Q ss_pred EEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 160 GWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 160 V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) |+... .....+..+.+.|+++|+++.... T Consensus 236 v~~~~-----g~~~~~~~~~~~l~~~G~~v~~g~ 264 (337) T cd05283 236 IIDTV-----SASHDLDPYLSLLKPGGTLVLVGA 264 (337) T ss_pred EEECC-----CCcchHHHHHHHhcCCCEEEEEec Confidence 87422 222346677889999999887643 No 402 >PRK10083 putative oxidoreductase; Provisional Probab=89.86 E-value=2.1 Score=37.05 Aligned_cols=105 Identities=16% Similarity=0.017 Sum_probs=61.7 Q ss_pred HHHhCCCCCCCeEEEeCCCC-CHHHHHHHHh-cCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-CCCCCC Q psy2408 80 MINKTSITKGQRFIDIGCGF-GLSGIRLAKA-KGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-LPFDND 155 (298) Q Consensus 80 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~ 155 (298) +....++.++.+||=.|+|. |..+..+++. .|+ .++++|.+++..+.+++. |...-+.....+... +.-... T Consensus 152 ~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~g~ 227 (339) T PRK10083 152 VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES----GADWVINNAQEPLGEALEEKGI 227 (339) T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh----CCcEEecCccccHHHHHhcCCC Confidence 34455678899999999764 5666666664 477 488899988887777653 321111111111111 110111 Q ss_pred CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) .+|+|+-. ......+....+.|+++|+++.... T Consensus 228 ~~d~vid~-----~g~~~~~~~~~~~l~~~G~~v~~g~ 260 (339) T PRK10083 228 KPTLIIDA-----ACHPSILEEAVTLASPAARIVLMGF 260 (339) T ss_pred CCCEEEEC-----CCCHHHHHHHHHHhhcCCEEEEEcc Confidence 24565432 2223567788899999999887644 No 403 >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi Probab=89.76 E-value=4.7 Score=35.81 Aligned_cols=99 Identities=19% Similarity=0.153 Sum_probs=61.7 Q ss_pred CCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC---CC----CCCCCCC Q psy2408 84 TSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHG---DA----LNLPFDN 154 (298) Q Consensus 84 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~---d~----~~~~~~~ 154 (298) ..+.++.+||=.|+|. |..+..+++..|+ .+++++.+++..+.+++. +...-+..... +. ..+ .+. T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~~~~v~~~-~~g 273 (384) T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEM----GADYVFNPTKMRDCLSGEKVMEV-TKG 273 (384) T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCCEEEcccccccccHHHHHHHh-cCC Confidence 4667888999888765 6666667776788 799999988765555442 33211111110 10 111 123 Q ss_pred CCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEe Q psy2408 155 DSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTD 192 (298) Q Consensus 155 ~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~ 192 (298) ..+|+|+.. ...+ ..+..+.+.|+++|+++... T Consensus 274 ~gvDvvld~-----~g~~~~~~~~~~~~l~~~G~~v~~g 307 (384) T cd08265 274 WGADIQVEA-----AGAPPATIPQMEKSIAINGKIVYIG 307 (384) T ss_pred CCCCEEEEC-----CCCcHHHHHHHHHHHHcCCEEEEEC Confidence 468988643 2233 56778889999999988754 No 404 >cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Probab=89.51 E-value=1.2 Score=38.67 Aligned_cols=99 Identities=14% Similarity=0.189 Sum_probs=61.3 Q ss_pred hCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC----C--CCCC Q psy2408 83 KTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN----L--PFDN 154 (298) Q Consensus 83 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~----~--~~~~ 154 (298) ...+.++.+||=.|||. |..+..+++..|.. +++++.++...+.+++ .+.. .++...-.. + ..+. T Consensus 163 ~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~ga~---~v~~~~~~~~~~~i~~~~~~ 235 (345) T cd08287 163 SAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE----FGAT---DIVAERGEEAVARVRELTGG 235 (345) T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc---eEecCCcccHHHHHHHhcCC Confidence 44567788888888774 66677777777874 8999988765555543 2321 112111111 0 0123 Q ss_pred CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) ..+|+++.. ......+..+.+.++++|++++... T Consensus 236 ~~~d~il~~-----~g~~~~~~~~~~~l~~~g~~v~~g~ 269 (345) T cd08287 236 VGADAVLEC-----VGTQESMEQAIAIARPGGRVGYVGV 269 (345) T ss_pred CCCCEEEEC-----CCCHHHHHHHHHhhccCCEEEEecc Confidence 458888642 2234678888999999999887643 No 405 >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A. Probab=89.41 E-value=1.8 Score=31.57 Aligned_cols=99 Identities=18% Similarity=0.272 Sum_probs=48.4 Q ss_pred HHHHHHHhCCCCCCCeEEEeCCCCC-HHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC- Q psy2408 76 LSRIMINKTSITKGQRFIDIGCGFG-LSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD- 153 (298) Q Consensus 76 ~~~~l~~~~~~~~~~~vLDiGcG~G-~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~- 153 (298) +.+.+.+.. +..+|+|+|-|.= ..+..|.+ .|..|+++|+.+. .+. ..+.++..|+.+..++ T Consensus 4 ~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~-~G~dV~~tDi~~~-------~a~-----~g~~~v~DDif~P~l~i 67 (127) T PF03686_consen 4 FAEYIARLN---NYGKIVEVGIGFNPEVAKKLKE-RGFDVIATDINPR-------KAP-----EGVNFVVDDIFNPNLEI 67 (127) T ss_dssp HHHHHHHHS----SSEEEEET-TT--HHHHHHHH-HS-EEEEE-SS-S----------------STTEE---SSS--HHH T ss_pred HHHHHHHhC---CCCcEEEECcCCCHHHHHHHHH-cCCcEEEEECccc-------ccc-----cCcceeeecccCCCHHH Confidence 344555443 3349999999985 44555555 6899999999886 111 2367899999884321 Q ss_pred CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC Q psy2408 154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 194 (298) =...|+|++...-.-+. ..+.++.+- -|.-++|.... T Consensus 68 Y~~a~lIYSiRPP~El~--~~il~lA~~--v~adlii~pL~ 104 (127) T PF03686_consen 68 YEGADLIYSIRPPPELQ--PPILELAKK--VGADLIIRPLG 104 (127) T ss_dssp HTTEEEEEEES--TTSH--HHHHHHHHH--HT-EEEEE-BT T ss_pred hcCCcEEEEeCCChHHh--HHHHHHHHH--hCCCEEEECCC Confidence 14678887644322111 333333332 24567776554 No 406 >KOG2912|consensus Probab=89.17 E-value=1.3 Score=37.68 Aligned_cols=92 Identities=12% Similarity=0.019 Sum_probs=60.2 Q ss_pred HHHHHHHHhCCCCCCCe--EEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC Q psy2408 75 KLSRIMINKTSITKGQR--FIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP 151 (298) Q Consensus 75 ~~~~~l~~~~~~~~~~~--vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~ 151 (298) .+...++..-....+.. =+|||.|+..+-..+... .+....+.|++...+..|+.+....++.+.+.+++....+.- T Consensus 87 hwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktl 166 (419) T KOG2912|consen 87 HWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTL 166 (419) T ss_pred HHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhc Confidence 33444444433233322 378888876554444333 477899999999999999999999999888888777543321 Q ss_pred -------CCCCCeeEEEecccc Q psy2408 152 -------FDNDSFDGGWFFESI 166 (298) Q Consensus 152 -------~~~~~fD~V~~~~~l 166 (298) -++..||.++|+-.+ T Consensus 167 l~d~~~~~~e~~ydFcMcNPPF 188 (419) T KOG2912|consen 167 LMDALKEESEIIYDFCMCNPPF 188 (419) T ss_pred chhhhccCccceeeEEecCCch Confidence 123458888776544 No 407 >cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Probab=89.15 E-value=1.3 Score=38.42 Aligned_cols=97 Identities=24% Similarity=0.287 Sum_probs=58.3 Q ss_pred CCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC---CCCCCCCCCeeEE Q psy2408 86 ITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA---LNLPFDNDSFDGG 160 (298) Q Consensus 86 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~fD~V 160 (298) ..++.+||-.|+|. |..+..+++..|. .+++++-+++....+++. +...-+.....+. ..+ .+.+.+|+| T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~-~~~~~vd~v 235 (341) T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM----GADVVINPREEDVVEVKSV-TDGTGVDVV 235 (341) T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CcceeeCcccccHHHHHHH-cCCCCCCEE Confidence 35778888888764 6666777777787 688888777666655532 3211011111111 111 123568888 Q ss_pred EecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 161 WFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 161 ~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) +.+- .....+..+.+.|+++|+++... T Consensus 236 ld~~-----g~~~~~~~~~~~l~~~G~~v~~g 262 (341) T cd05281 236 LEMS-----GNPKAIEQGLKALTPGGRVSILG 262 (341) T ss_pred EECC-----CCHHHHHHHHHHhccCCEEEEEc Confidence 7432 12246677889999999987654 No 408 >COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism] Probab=89.09 E-value=1.4 Score=37.05 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=40.0 Q ss_pred CCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh Q psy2408 84 TSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKA 133 (298) Q Consensus 84 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~ 133 (298) +.+..+.+|.-+|+|.-.+..++++ .++++.+||+++..+...+-++.. T Consensus 59 m~~g~ghrivtigSGGcn~L~ylsr-~Pa~id~VDlN~ahiAln~lklaA 107 (414) T COG5379 59 MQLGIGHRIVTIGSGGCNMLAYLSR-APARIDVVDLNPAHIALNRLKLAA 107 (414) T ss_pred HhcCCCcEEEEecCCcchHHHHhhc-CCceeEEEeCCHHHHHHHHHHHHH Confidence 3446788999999998778878877 578999999999998887766553 No 409 >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] Probab=89.01 E-value=4.9 Score=35.64 Aligned_cols=69 Identities=22% Similarity=0.080 Sum_probs=46.4 Q ss_pred CeEEEeCCCC-CHHHHHH-HHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-C--CCCCeeEEEec Q psy2408 90 QRFIDIGCGF-GLSGIRL-AKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-F--DNDSFDGGWFF 163 (298) Q Consensus 90 ~~vLDiGcG~-G~~~~~l-~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~--~~~~fD~V~~~ 163 (298) .+||=||||. |...... ++....+|+..|-|.+.++.+..... .+++..+.|+.+.+ . --..+|+|+.. T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389) T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALIKDFDLVINA 75 (389) T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHHhcCCEEEEe Confidence 4799999975 5554443 33223799999999988877765532 25888888887752 0 01446888753 No 410 >PRK08324 short chain dehydrogenase; Validated Probab=88.96 E-value=4.4 Score=39.12 Aligned_cols=101 Identities=20% Similarity=0.129 Sum_probs=63.1 Q ss_pred CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----C-----CC Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----F-----DN 154 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~ 154 (298) ++.+||-.|+ +|.++..+++. .|++|+++|.++..++.+...+... .++.++..|+.+.. + .. T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681) T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681) T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc Confidence 4578888875 44555555543 4789999999987776665544322 35788888887631 1 02 Q ss_pred CCeeEEEecccccccCh-------------------H-HHHHHHhhcccC---CcEEEEEe Q psy2408 155 DSFDGGWFFESIFHMNH-------------------S-AALNEARRVLKS---GSILTLTD 192 (298) Q Consensus 155 ~~fD~V~~~~~l~~~~~-------------------~-~~l~~~~r~Lkp---gG~l~i~~ 192 (298) +.+|+|+.+........ . .+++.+.+.+++ +|.+++.. T Consensus 497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681) T PRK08324 497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681) T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC Confidence 46899987665332110 2 456666777765 57776654 No 411 >cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty Probab=88.85 E-value=2.5 Score=36.77 Aligned_cols=100 Identities=18% Similarity=0.215 Sum_probs=63.3 Q ss_pred HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC-CCC-----CCCC Q psy2408 82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA-LNL-----PFDN 154 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~-~~~-----~~~~ 154 (298) ....+.++.+||=.|+|. |..+..+++..|.++++++.+++..+.+++ .+.. .++...- .++ .... T Consensus 159 ~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~i~~~~~~~~~~~~~~~~~ 231 (345) T cd08260 159 HQARVKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARE----LGAV---ATVNASEVEDVAAAVRDLTG 231 (345) T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH----hCCC---EEEccccchhHHHHHHHHhC Confidence 345567888999999764 666667777778999999999887777743 2331 2221111 111 0111 Q ss_pred CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) +.+|+|+.. +.....+....+.|+++|.++.... T Consensus 232 ~~~d~vi~~-----~g~~~~~~~~~~~l~~~g~~i~~g~ 265 (345) T cd08260 232 GGAHVSVDA-----LGIPETCRNSVASLRKRGRHVQVGL 265 (345) T ss_pred CCCCEEEEc-----CCCHHHHHHHHHHhhcCCEEEEeCC Confidence 268888653 2223466778899999999876543 No 412 >cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh Probab=88.45 E-value=6.9 Score=33.94 Aligned_cols=97 Identities=19% Similarity=0.237 Sum_probs=59.4 Q ss_pred HhCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC---C-CCCCC Q psy2408 82 NKTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN---L-PFDND 155 (298) Q Consensus 82 ~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~---~-~~~~~ 155 (298) ....+.++.+||=.|+ | .|..+..+++..|+++++++.+. ..+.++ ..+.. .+...+-.. . ..... T Consensus 171 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~----~~g~~---~~~~~~~~~~~~~~~~~~~ 242 (350) T cd08274 171 ERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVR----ALGAD---TVILRDAPLLADAKALGGE 242 (350) T ss_pred hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHH----hcCCe---EEEeCCCccHHHHHhhCCC Confidence 4556778999999997 3 36777777887889998888654 444443 23331 122111100 0 01235 Q ss_pred CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) .+|+|+.... . ..+..+.+.|+++|.++... T Consensus 243 ~~d~vi~~~g-----~-~~~~~~~~~l~~~G~~v~~g 273 (350) T cd08274 243 PVDVVADVVG-----G-PLFPDLLRLLRPGGRYVTAG 273 (350) T ss_pred CCcEEEecCC-----H-HHHHHHHHHhccCCEEEEec Confidence 6898874322 1 35677889999999987643 No 413 >TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site. Probab=88.32 E-value=6 Score=34.31 Aligned_cols=96 Identities=23% Similarity=0.244 Sum_probs=58.5 Q ss_pred CCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCCCCCe Q psy2408 86 ITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFDNDSF 157 (298) Q Consensus 86 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~~f 157 (298) ..++.+||-.|+|. |..+..+++..|.+ |++++-++...+.+++. +.. .++...-..+ ..+...+ T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~v~~~~~~~~~~l~~~~~~~~~ 231 (340) T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM----GAT---YVVNPFKEDVVKEVADLTDGEGV 231 (340) T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCc---EEEcccccCHHHHHHHhcCCCCC Confidence 35778888877653 56666677767886 88888887766666543 321 1221111110 1123568 Q ss_pred eEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 158 DGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 158 D~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) |+|+-+. .....+..+.+.|+++|+++.... T Consensus 232 d~vld~~-----g~~~~~~~~~~~l~~~g~~v~~g~ 262 (340) T TIGR00692 232 DVFLEMS-----GAPKALEQGLQAVTPGGRVSLLGL 262 (340) T ss_pred CEEEECC-----CCHHHHHHHHHhhcCCCEEEEEcc Confidence 9887541 122567788899999999876543 No 414 >cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d Probab=88.25 E-value=1.2 Score=38.58 Aligned_cols=95 Identities=19% Similarity=0.220 Sum_probs=59.0 Q ss_pred CCCCCeEEEeCCCC-CHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC------CCCCCCCCCe Q psy2408 86 ITKGQRFIDIGCGF-GLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA------LNLPFDNDSF 157 (298) Q Consensus 86 ~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~------~~~~~~~~~f 157 (298) +.++.+||=.|+|. |..+..+++..+ .++++++.+++..+.+++ .+.. .++..+- ..+ .+...+ T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~i~~~-~~~~~~ 236 (340) T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER----LGAD---HVLNASDDVVEEVREL-TGGRGA 236 (340) T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH----hCCc---EEEcCCccHHHHHHHH-hCCCCC Confidence 46788999999664 555555666667 799999988877666543 2321 1221111 111 123468 Q ss_pred eEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 158 DGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 158 D~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) |+|+.. ......+..+.+.|+++|+++.... T Consensus 237 dvvld~-----~g~~~~~~~~~~~l~~~g~~i~~g~ 267 (340) T cd05284 237 DAVIDF-----VGSDETLALAAKLLAKGGRYVIVGY 267 (340) T ss_pred CEEEEc-----CCCHHHHHHHHHHhhcCCEEEEEcC Confidence 988743 2223567788899999999887543 No 415 >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... Probab=88.15 E-value=0.8 Score=39.51 Aligned_cols=64 Identities=19% Similarity=0.121 Sum_probs=49.0 Q ss_pred eEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC---CCCCCeeEEEecc Q psy2408 91 RFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP---FDNDSFDGGWFFE 164 (298) Q Consensus 91 ~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V~~~~ 164 (298) +++|+-||.|.++.-+.+ .| ..+.++|+++...+.-+.++. .....|+.++. ++. .+|+++... T Consensus 2 ~~~dlFsG~Gg~~~g~~~-ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggp 69 (335) T PF00145_consen 2 KVIDLFSGIGGFSLGLEQ-AGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGP 69 (335) T ss_dssp EEEEET-TTTHHHHHHHH-TTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE- T ss_pred cEEEEccCccHHHHHHHh-cCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEecc Confidence 799999999999998888 44 378999999998888887763 67888888873 443 599998643 No 416 >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] Probab=88.06 E-value=2.1 Score=35.47 Aligned_cols=88 Identities=18% Similarity=0.171 Sum_probs=59.8 Q ss_pred CCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecc Q psy2408 85 SITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFE 164 (298) Q Consensus 85 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~ 164 (298) .+.+++...|+|...|.++..|.+ .+..|++||--+ |.+... .. +.++-...|..++.......|-.+|.. T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVk-r~m~V~aVDng~-ma~sL~----dt---g~v~h~r~DGfk~~P~r~~idWmVCDm 278 (358) T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVK-RNMRVYAVDNGP-MAQSLM----DT---GQVTHLREDGFKFRPTRSNIDWMVCDM 278 (358) T ss_pred hhcCCceeeecccCCCccchhhhh-cceEEEEeccch-hhhhhh----cc---cceeeeeccCcccccCCCCCceEEeeh Confidence 457899999999999999999998 578999999754 222221 12 357778888887743356788776643 Q ss_pred cccccChH-HHHHHHhhcccCC Q psy2408 165 SIFHMNHS-AALNEARRVLKSG 185 (298) Q Consensus 165 ~l~~~~~~-~~l~~~~r~Lkpg 185 (298) + ..| ..-..+...|..| T Consensus 279 V----EkP~rv~~li~~Wl~nG 296 (358) T COG2933 279 V----EKPARVAALIAKWLVNG 296 (358) T ss_pred h----cCcHHHHHHHHHHHHcc Confidence 3 344 4444555555544 No 417 >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Probab=87.98 E-value=5.3 Score=38.88 Aligned_cols=145 Identities=11% Similarity=0.037 Sum_probs=83.1 Q ss_pred CeEEEeCCCC-CHH-HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc-------C-CC--------CceEEEECCCCCCC Q psy2408 90 QRFIDIGCGF-GLS-GIRLAKAKGCRVDGITISKFQQESAMKTAKAE-------G-LL--------DKVNFLHGDALNLP 151 (298) Q Consensus 90 ~~vLDiGcG~-G~~-~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~~ 151 (298) .+|--||+|+ |.- +..++. .|..|+.+|.+++.++.+..++... + +. .++++. .|...+ T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~-~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 412 (737) T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVD-KGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSGF- 412 (737) T ss_pred cEEEEECCCHhHHHHHHHHHh-CCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHHh- Confidence 5789999997 333 333333 5899999999999999887765421 1 11 123222 233221 Q ss_pred CCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh---hcc------------- Q psy2408 152 FDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK---NIH------------- 214 (298) Q Consensus 152 ~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~---~~~------------- 214 (298) ...|+|+= .+.+.+.-. ++++++.++++|+..|.-.+....- ......... ... T Consensus 413 ---~~aDlViE-Av~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i-----~~la~~~~~p~r~ig~Hff~P~~~m~Lv 483 (737) T TIGR02441 413 ---KNADMVIE-AVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPI-----KDIAAVSSRPEKVIGMHYFSPVDKMQLL 483 (737) T ss_pred ---ccCCeehh-hccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH-----HHHHhhcCCccceEEEeccCCcccCceE Confidence 35677642 244444445 9999999999999776544333211 111111000 000 Q ss_pred ---cCCCC----cchHHHHHHhCCCcEEEEEeCCCCccc Q psy2408 215 ---SNFIL----VEHYPDLLNKSGFELIKIDDITSHVMP 246 (298) Q Consensus 215 ---~~~~~----~~~~~~~l~~~Gf~~~~~~~~~~~~~~ 246 (298) ....| .+....++++.|...+.+.+.+..+.+ T Consensus 484 Evv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~N 522 (737) T TIGR02441 484 EIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTT 522 (737) T ss_pred EEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCCchHH Confidence 01112 334456778899998888777666655 No 418 >PLN02702 L-idonate 5-dehydrogenase Probab=87.94 E-value=10 Score=33.20 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=62.6 Q ss_pred HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEE--ECCCCC----C-CC Q psy2408 82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFL--HGDALN----L-PF 152 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~--~~d~~~----~-~~ 152 (298) ....+.++.+||-+|+|. |..+..+++..|+ .++++|.++...+.++.. +.+..+.+. ..+... + .. T Consensus 175 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~ 250 (364) T PLN02702 175 RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQL----GADEIVLVSTNIEDVESEVEEIQKA 250 (364) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEecCcccccHHHHHHHHhhh Confidence 456677888999998763 6666777776776 488999988777766543 322111110 011100 1 01 Q ss_pred CCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 153 ~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) ....+|+|+-. ......+..+.+.|+++|+++.... T Consensus 251 ~~~~~d~vid~-----~g~~~~~~~~~~~l~~~G~~v~~g~ 286 (364) T PLN02702 251 MGGGIDVSFDC-----VGFNKTMSTALEATRAGGKVCLVGM 286 (364) T ss_pred cCCCCCEEEEC-----CCCHHHHHHHHHHHhcCCEEEEEcc Confidence 12468887643 2223567888899999999876543 No 419 >cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic Probab=87.94 E-value=2.4 Score=36.00 Aligned_cols=98 Identities=21% Similarity=0.245 Sum_probs=60.9 Q ss_pred hCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCCC Q psy2408 83 KTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFDN 154 (298) Q Consensus 83 ~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~ 154 (298) ...+.++.+||-.|| | .|..+..+++..|+.+++++.++...+.++.. +.. .++..+-... ..+. T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~i~~~~~~ 206 (323) T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARAL----GAD---HVIDYRDPDLRERVKALTGG 206 (323) T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHc----CCc---eeeecCCccHHHHHHHHcCC Confidence 445678899999998 2 46666677776789999999998777766432 321 1122111111 0123 Q ss_pred CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) ..+|+++.+.. . ..+..+.+.++++|.++.... T Consensus 207 ~~~d~v~~~~g-----~-~~~~~~~~~~~~~g~~v~~~~ 239 (323) T cd08241 207 RGVDVVYDPVG-----G-DVFEASLRSLAWGGRLLVIGF 239 (323) T ss_pred CCcEEEEECcc-----H-HHHHHHHHhhccCCEEEEEcc Confidence 46888865322 1 345567788899999876543 No 420 >COG0863 DNA modification methylase [DNA replication, recombination, and repair] Probab=87.91 E-value=3.1 Score=35.38 Aligned_cols=59 Identities=27% Similarity=0.247 Sum_probs=48.2 Q ss_pred HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc Q psy2408 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAE 134 (298) Q Consensus 74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~ 134 (298) ..+...++.. ...++..|||.=+|+|..+..... .+..++|+|+++..++.+.+++... T Consensus 209 ~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~-~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302) T COG0863 209 LALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKN-LGRRFIGIEINPEYVEVALKRLQEG 267 (302) T ss_pred HHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHH-cCCceEEEecCHHHHHHHHHHHHhh Confidence 4455555555 446899999999999999876666 7889999999999999999998753 No 421 >cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical Probab=87.89 E-value=9.2 Score=33.10 Aligned_cols=98 Identities=20% Similarity=0.245 Sum_probs=60.1 Q ss_pred CCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCCCC Q psy2408 84 TSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFDND 155 (298) Q Consensus 84 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~ 155 (298) ..+.++.+||=.|+|. |..+..+++..|. ++++++.++.....+.+ .|. ..+..+-.++ -.+.. T Consensus 163 ~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~----~~~~~~~~~~~~~l~~~~~~~ 234 (344) T cd08284 163 AQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAA----LGA----EPINFEDAEPVERVREATEGR 234 (344) T ss_pred cCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----hCC----eEEecCCcCHHHHHHHHhCCC Confidence 4566788998888654 5556666776785 89999888766665543 232 1122211111 01235 Q ss_pred CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC Q psy2408 156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 194 (298) .+|+|+-. ......+....+.|+++|+++..... T Consensus 235 ~~dvvid~-----~~~~~~~~~~~~~l~~~g~~v~~g~~ 268 (344) T cd08284 235 GADVVLEA-----VGGAAALDLAFDLVRPGGVISSVGVH 268 (344) T ss_pred CCCEEEEC-----CCCHHHHHHHHHhcccCCEEEEECcC Confidence 68988643 22235677888999999998875433 No 422 >KOG1201|consensus Probab=87.83 E-value=4.9 Score=34.03 Aligned_cols=78 Identities=21% Similarity=0.192 Sum_probs=56.8 Q ss_pred CCCeEEEeCCCCCHH---HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----------CCC Q psy2408 88 KGQRFIDIGCGFGLS---GIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----------FDN 154 (298) Q Consensus 88 ~~~~vLDiGcG~G~~---~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~ 154 (298) .|..||=-|+|.|.- +..+++ .++++...|++++..+.-.+.+.+.| ++.....|+.+.. -.- T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~-rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300) T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAK-RGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEV 112 (300) T ss_pred cCCEEEEeCCCchHHHHHHHHHHH-hCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhc Confidence 577999999888732 444444 57899999999988888877777654 5888899988741 123 Q ss_pred CCeeEEEeccccccc Q psy2408 155 DSFDGGWFFESIFHM 169 (298) Q Consensus 155 ~~fD~V~~~~~l~~~ 169 (298) +..|+++.+..+-+. T Consensus 113 G~V~ILVNNAGI~~~ 127 (300) T KOG1201|consen 113 GDVDILVNNAGIVTG 127 (300) T ss_pred CCceEEEeccccccC Confidence 678998887665443 No 423 >cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone Probab=87.80 E-value=1.5 Score=37.26 Aligned_cols=98 Identities=17% Similarity=0.115 Sum_probs=62.3 Q ss_pred hCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----C-CCC Q psy2408 83 KTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----P-FDN 154 (298) Q Consensus 83 ~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~ 154 (298) ...+.++.+||=.|+ | .|..+..+++..|..+++++.++...+.+++ .+.. .++..+-..+ . ... T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~ 203 (320) T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARA----AGAD---HVINYRDEDFVERVREITGG 203 (320) T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----CCCC---EEEeCCchhHHHHHHHHcCC Confidence 445678889999994 3 4777777888789999999998887766643 2321 1222211111 0 123 Q ss_pred CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) ..+|+|+.+.. . ..+..+.+.|+++|+++.... T Consensus 204 ~~~d~vl~~~~-----~-~~~~~~~~~l~~~g~~v~~g~ 236 (320) T cd05286 204 RGVDVVYDGVG-----K-DTFEGSLDSLRPRGTLVSFGN 236 (320) T ss_pred CCeeEEEECCC-----c-HhHHHHHHhhccCcEEEEEec Confidence 46898875321 2 355667888999999886543 No 424 >cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i Probab=87.73 E-value=1.4 Score=38.26 Aligned_cols=99 Identities=26% Similarity=0.284 Sum_probs=62.2 Q ss_pred HhCCCCCCCeEEEeCCC-CCHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCC Q psy2408 82 NKTSITKGQRFIDIGCG-FGLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFD 153 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~ 153 (298) ....+.++.+||=.|+| .|..+..+++..|.+ +++++.+++..+.+.. .+.. .++..+-..+ -.+ T Consensus 159 ~~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~----~g~~---~~~~~~~~~~~~~i~~~~~ 231 (343) T cd08235 159 RKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKK----LGAD---YTIDAAEEDLVEKVRELTD 231 (343) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---EEecCCccCHHHHHHHHhC Confidence 34567788999999876 366666677767888 9899988887776643 2321 2222111110 012 Q ss_pred CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) ...+|+|+... .....+..+.+.|+++|+++... T Consensus 232 ~~~vd~vld~~-----~~~~~~~~~~~~l~~~g~~v~~~ 265 (343) T cd08235 232 GRGADVVIVAT-----GSPEAQAQALELVRKGGRILFFG 265 (343) T ss_pred CcCCCEEEECC-----CChHHHHHHHHHhhcCCEEEEEe Confidence 34589887432 12246677788999999988754 No 425 >PRK05708 2-dehydropantoate 2-reductase; Provisional Probab=87.73 E-value=4.7 Score=34.63 Aligned_cols=95 Identities=18% Similarity=0.160 Sum_probs=55.2 Q ss_pred CeEEEeCCCC-CH-HHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCC----CceEEEECCCCCCCCCCCCeeEEEec Q psy2408 90 QRFIDIGCGF-GL-SGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLL----DKVNFLHGDALNLPFDNDSFDGGWFF 163 (298) Q Consensus 90 ~~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~----~~i~~~~~d~~~~~~~~~~fD~V~~~ 163 (298) ++|+=+|+|. |. ++..|++ .|..|+.++-+.+.++..++. .|+. ............ +-+.+.||+|+.. T Consensus 3 m~I~IiGaGaiG~~~a~~L~~-~G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~~-~~~~~~~D~viv~ 77 (305) T PRK05708 3 MTWHILGAGSLGSLWACRLAR-AGLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAET-ADAAEPIHRLLLA 77 (305) T ss_pred ceEEEECCCHHHHHHHHHHHh-CCCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCCC-cccccccCEEEEE Confidence 4799999996 54 4666665 688999999987666655532 1210 000111111111 1123579988754 Q ss_pred ccccccChHHHHHHHhhcccCCcEEEEE Q psy2408 164 ESIFHMNHSAALNEARRVLKSGSILTLT 191 (298) Q Consensus 164 ~~l~~~~~~~~l~~~~r~LkpgG~l~i~ 191 (298) -=-++ ...+++.+...+.++..++.. T Consensus 78 vK~~~--~~~al~~l~~~l~~~t~vv~l 103 (305) T PRK05708 78 CKAYD--AEPAVASLAHRLAPGAELLLL 103 (305) T ss_pred CCHHh--HHHHHHHHHhhCCCCCEEEEE Confidence 32221 117888888999998876654 No 426 >cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et Probab=87.70 E-value=13 Score=31.27 Aligned_cols=94 Identities=19% Similarity=0.211 Sum_probs=56.5 Q ss_pred CCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC--CCCCCCeeEE Q psy2408 85 SITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL--PFDNDSFDGG 160 (298) Q Consensus 85 ~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V 160 (298) .+.++.+||=.|+ | .|..+..+++..|.++++++.++ ..+.++. .+.. .++...-... ......+|++ T Consensus 141 ~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~d~v 212 (309) T cd05289 141 GLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRS----LGAD---EVIDYTKGDFERAAAPGGVDAV 212 (309) T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHH----cCCC---EEEeCCCCchhhccCCCCceEE Confidence 3678889998886 3 46666777776788998888766 5544432 2321 1222111111 1223568887 Q ss_pred EecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 161 WFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 161 ~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) +.+ ... ..+..+.+.++++|.++... T Consensus 213 ~~~-----~~~-~~~~~~~~~l~~~g~~v~~g 238 (309) T cd05289 213 LDT-----VGG-ETLARSLALVKPGGRLVSIA 238 (309) T ss_pred EEC-----Cch-HHHHHHHHHHhcCcEEEEEc Confidence 642 222 35667778899999988654 No 427 >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin Probab=87.50 E-value=8 Score=33.25 Aligned_cols=93 Identities=18% Similarity=0.093 Sum_probs=54.8 Q ss_pred CCCeEEEe--CCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCCCCCee Q psy2408 88 KGQRFIDI--GCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFDNDSFD 158 (298) Q Consensus 88 ~~~~vLDi--GcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~~fD 158 (298) ++.++|=+ |+|. |..+..+++..|+++++++.++...+.+++. +.. .++..+-.++ ..+...+| T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~~----g~~---~~i~~~~~~~~~~v~~~~~~~~~d 214 (324) T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKKI----GAE---YVLNSSDPDFLEDLKELIAKLNAT 214 (324) T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCc---EEEECCCccHHHHHHHHhCCCCCc Confidence 34455544 5443 6667777777799999999999887777652 321 2232221111 01224688 Q ss_pred EEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 159 GGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 159 ~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) +|+-.- ... .+....+.++++|+++.... T Consensus 215 ~vid~~-----g~~-~~~~~~~~l~~~G~~v~~g~ 243 (324) T cd08291 215 IFFDAV-----GGG-LTGQILLAMPYGSTLYVYGY 243 (324) T ss_pred EEEECC-----CcH-HHHHHHHhhCCCCEEEEEEe Confidence 886422 222 23456778899999887643 No 428 >PRK08265 short chain dehydrogenase; Provisional Probab=87.29 E-value=8 Score=32.09 Aligned_cols=73 Identities=21% Similarity=0.204 Sum_probs=46.1 Q ss_pred CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----C-----CC Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----F-----DN 154 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~ 154 (298) .+.++|-.|+ +|.++..+++. .|++|+.+|.++..++...... + .++.++.+|+.+.. + .. T Consensus 5 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (261) T PRK08265 5 AGKVAIVTGG-ATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---G--ERARFIATDITDDAAIERAVATVVARF 78 (261) T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CeeEEEEecCCCHHHHHHHHHHHHHHh Confidence 3567887775 45566666554 4889999999876554443332 2 35788889987641 0 01 Q ss_pred CCeeEEEecccc Q psy2408 155 DSFDGGWFFESI 166 (298) Q Consensus 155 ~~fD~V~~~~~l 166 (298) +..|+++.+... T Consensus 79 g~id~lv~~ag~ 90 (261) T PRK08265 79 GRVDILVNLACT 90 (261) T ss_pred CCCCEEEECCCC Confidence 467988876543 No 429 >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy Probab=87.19 E-value=11 Score=32.68 Aligned_cols=94 Identities=26% Similarity=0.293 Sum_probs=59.3 Q ss_pred CCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC----C-CCCCCCeeE Q psy2408 87 TKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN----L-PFDNDSFDG 159 (298) Q Consensus 87 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~----~-~~~~~~fD~ 159 (298) .++.+||-.|+|. |..+..+++..|. .|++++.++...+.+++. +.. .++...-.. + ....+.+|+ T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~~~d~ 246 (350) T cd08240 174 VADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA----GAD---VVVNGSDPDAAKRIIKAAGGGVDA 246 (350) T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCc---EEecCCCccHHHHHHHHhCCCCcE Confidence 4678999998764 6667777777787 789999988877776432 321 122211111 0 011126888 Q ss_pred EEecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 160 GWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 160 V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) |+.. ......+..+.+.|+++|+++... T Consensus 247 vid~-----~g~~~~~~~~~~~l~~~g~~v~~g 274 (350) T cd08240 247 VIDF-----VNNSATASLAFDILAKGGKLVLVG 274 (350) T ss_pred EEEC-----CCCHHHHHHHHHHhhcCCeEEEEC Confidence 8642 222356788899999999988653 No 430 >cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically Probab=87.05 E-value=4 Score=36.09 Aligned_cols=105 Identities=20% Similarity=0.251 Sum_probs=60.8 Q ss_pred HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC--CCC-C-CCCC Q psy2408 81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD--ALN-L-PFDN 154 (298) Q Consensus 81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d--~~~-~-~~~~ 154 (298) ....++.++.+||=.|+|. |..+..+++..|. +|+.+|.++...+.++.. |...-+.....+ ... + .... T Consensus 183 ~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~~i~~~~~~~~~~~~v~~~~~ 258 (373) T cd08299 183 VNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKEL----GATECINPQDYKKPIQEVLTEMTD 258 (373) T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCceEecccccchhHHHHHHHHhC Confidence 4456677889999998764 5566666776787 799999998887777442 321111111111 100 0 0112 Q ss_pred CCeeEEEecccccccChHHHHHH-HhhcccCCcEEEEEeCC Q psy2408 155 DSFDGGWFFESIFHMNHSAALNE-ARRVLKSGSILTLTDLP 194 (298) Q Consensus 155 ~~fD~V~~~~~l~~~~~~~~l~~-~~r~LkpgG~l~i~~~~ 194 (298) ..+|+|+-. ...+..+.. +..+++++|+++..... T Consensus 259 ~~~d~vld~-----~g~~~~~~~~~~~~~~~~G~~v~~g~~ 294 (373) T cd08299 259 GGVDFSFEV-----IGRLDTMKAALASCHEGYGVSVIVGVP 294 (373) T ss_pred CCCeEEEEC-----CCCcHHHHHHHHhhccCCCEEEEEccC Confidence 458887643 222334444 44456788998877543 No 431 >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated Probab=86.92 E-value=3.5 Score=35.10 Aligned_cols=145 Identities=14% Similarity=0.105 Sum_probs=75.9 Q ss_pred CeEEEeCCCC-CHH-HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc----------CC---------CCceEEEECCCC Q psy2408 90 QRFIDIGCGF-GLS-GIRLAKAKGCRVDGITISKFQQESAMKTAKAE----------GL---------LDKVNFLHGDAL 148 (298) Q Consensus 90 ~~vLDiGcG~-G~~-~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~----------~~---------~~~i~~~~~d~~ 148 (298) .+|.=||+|. |.. +..++. .|.+|+.+|.+++.++.+++.+... +. ..++.+ ..|.. T Consensus 4 ~~I~ViGaG~mG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~ 81 (291) T PRK06035 4 KVIGVVGSGVMGQGIAQVFAR-TGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSYE 81 (291) T ss_pred cEEEEECccHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCHH Confidence 4688889886 433 333333 5789999999999998776644321 11 011111 11221 Q ss_pred CCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh---hccc--------- Q psy2408 149 NLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK---NIHS--------- 215 (298) Q Consensus 149 ~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~---~~~~--------- 215 (298) . -...|+|+..- .+..... .+++++.+.++|+..+ ++.... .. .......... .... T Consensus 82 ~----~~~aDlVieav-~e~~~~k~~~~~~l~~~~~~~~il-~S~tsg---~~-~~~la~~~~~~~r~ig~hf~~P~~~~ 151 (291) T PRK06035 82 S----LSDADFIVEAV-PEKLDLKRKVFAELERNVSPETII-ASNTSG---IM-IAEIATALERKDRFIGMHWFNPAPVM 151 (291) T ss_pred H----hCCCCEEEEcC-cCcHHHHHHHHHHHHhhCCCCeEE-EEcCCC---CC-HHHHHhhcCCcccEEEEecCCCcccC Confidence 1 13468776532 2222223 7788888888877654 433221 11 1111111110 0000 Q ss_pred -------CCCC----cchHHHHHHhCCCcEEEEEeCCCCccc Q psy2408 216 -------NFIL----VEHYPDLLNKSGFELIKIDDITSHVMP 246 (298) Q Consensus 216 -------~~~~----~~~~~~~l~~~Gf~~~~~~~~~~~~~~ 246 (298) ...+ .+....+++..|..++.+.+.+..+.. T Consensus 152 ~~vEv~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~n 193 (291) T PRK06035 152 KLIEVVRAALTSEETFNTTVELSKKIGKIPIEVADVPGFFTT 193 (291) T ss_pred ccEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHH Confidence 0111 234556788899999988776666554 No 432 >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B. Probab=86.82 E-value=3.5 Score=31.02 Aligned_cols=49 Identities=12% Similarity=0.080 Sum_probs=34.0 Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCC Q psy2408 71 QGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITIS 120 (298) Q Consensus 71 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s 120 (298) .+|+....+.......-+| -|||+|-|.|..=..|-+.+ +.+++++|-. T Consensus 12 taQR~~L~~a~~~v~~~~G-~VlElGLGNGRTydHLRe~~p~R~I~vfDR~ 61 (160) T PF12692_consen 12 TAQRDCLNWAAAQVAGLPG-PVLELGLGNGRTYDHLREIFPDRRIYVFDRA 61 (160) T ss_dssp HHHHHHHHHHHHHTTT--S--EEEE--TTSHHHHHHHHH--SS-EEEEESS T ss_pred HHHHHHHHHHHHHhcCCCC-ceEEeccCCCccHHHHHHhCCCCeEEEEeee Confidence 4567777777777765454 89999999999999998874 7899999974 No 433 >cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i Probab=86.80 E-value=17 Score=30.85 Aligned_cols=99 Identities=23% Similarity=0.209 Sum_probs=60.4 Q ss_pred hCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCCC Q psy2408 83 KTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFDN 154 (298) Q Consensus 83 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~ 154 (298) ...+.++.+||=.|+|. |..+..+++..|.+ ++++..+++..+.++. .+.. .++...-..+ ..+. T Consensus 124 ~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~l~~~~~~ 196 (312) T cd08269 124 RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARE----LGAT---EVVTDDSEAIVERVRELTGG 196 (312) T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---eEecCCCcCHHHHHHHHcCC Confidence 55667888998887653 55556666667888 9999888876664432 2321 1222111111 0123 Q ss_pred CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) ..+|+++.+. .....+....+.|+++|.++.... T Consensus 197 ~~vd~vld~~-----g~~~~~~~~~~~l~~~g~~~~~g~ 230 (312) T cd08269 197 AGADVVIEAV-----GHQWPLDLAGELVAERGRLVIFGY 230 (312) T ss_pred CCCCEEEECC-----CCHHHHHHHHHHhccCCEEEEEcc Confidence 4688887532 122466778899999999887643 No 434 >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A. Probab=86.80 E-value=2.2 Score=32.45 Aligned_cols=53 Identities=19% Similarity=0.212 Sum_probs=30.6 Q ss_pred EeCCCCC--HHHHHHHH-h--cCCeEEEEeCCHHHHHHHHHH--HHhcCCCCceEEEECC Q psy2408 94 DIGCGFG--LSGIRLAK-A--KGCRVDGITISKFQQESAMKT--AKAEGLLDKVNFLHGD 146 (298) Q Consensus 94 DiGcG~G--~~~~~l~~-~--~~~~v~~vD~s~~~l~~a~~~--~~~~~~~~~i~~~~~d 146 (298) |||++.| .....+.. . .+.+|+++|+++...+..+.+ +........+++.... T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~ 60 (167) T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYA 60 (167) T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE- T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEee Confidence 8999999 55554432 1 367999999999999998888 4433222235555443 No 435 >cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo Probab=86.74 E-value=11 Score=33.39 Aligned_cols=104 Identities=16% Similarity=0.117 Sum_probs=63.8 Q ss_pred HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----CCCC Q psy2408 82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----PFDN 154 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~ 154 (298) ....+.++.+||-.|+|. |..+..+++..|. +++++|.++...+.+++. +. ..+...-... .+.. T Consensus 170 ~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~----g~----~~v~~~~~~~~~~i~~~~~ 241 (375) T cd08282 170 ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESI----GA----IPIDFSDGDPVEQILGLEP 241 (375) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CC----eEeccCcccHHHHHHHhhC Confidence 455667888998888874 6667777776786 799999988777766543 21 1111110110 1112 Q ss_pred CCeeEEEecccccc----cC-hH-HHHHHHhhcccCCcEEEEEeC Q psy2408 155 DSFDGGWFFESIFH----MN-HS-AALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 155 ~~fD~V~~~~~l~~----~~-~~-~~l~~~~r~LkpgG~l~i~~~ 193 (298) ..+|+|+-...-.. .. +. ..+..+.++|+++|.++.... T Consensus 242 ~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~ 286 (375) T cd08282 242 GGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGV 286 (375) T ss_pred CCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEec Confidence 45888875422110 01 22 568888999999999876544 No 436 >PRK12939 short chain dehydrogenase; Provisional Probab=86.57 E-value=6.4 Score=32.20 Aligned_cols=76 Identities=21% Similarity=0.187 Sum_probs=50.0 Q ss_pred CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CC-----C Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FD-----N 154 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~ 154 (298) ++.++|=.|+ +|.++..+++. .|+++++++.+++.++.....+...+ .++.++..|+.+.. +. - T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250) T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL 82 (250) T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc Confidence 3567886664 66676776654 37899999988876666555554333 35888999987641 00 1 Q ss_pred CCeeEEEecccc Q psy2408 155 DSFDGGWFFESI 166 (298) Q Consensus 155 ~~fD~V~~~~~l 166 (298) +.+|+|+.+... T Consensus 83 ~~id~vi~~ag~ 94 (250) T PRK12939 83 GGLDGLVNNAGI 94 (250) T ss_pred CCCCEEEECCCC Confidence 468988865543 No 437 >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated Probab=86.57 E-value=3.8 Score=34.85 Aligned_cols=94 Identities=15% Similarity=0.096 Sum_probs=55.1 Q ss_pred CeEEEeCCCC-C-HHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-------cCCC---------CceEEEECCCCCCC Q psy2408 90 QRFIDIGCGF-G-LSGIRLAKAKGCRVDGITISKFQQESAMKTAKA-------EGLL---------DKVNFLHGDALNLP 151 (298) Q Consensus 90 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~-------~~~~---------~~i~~~~~d~~~~~ 151 (298) .+|--||+|+ | .++..++. .|..|+.+|.+++.++.+++++.. .+.- .+++ ...|...+ T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~~- 82 (286) T PRK07819 6 QRVGVVGAGQMGAGIAEVCAR-AGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGDF- 82 (286) T ss_pred cEEEEEcccHHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHHh- Confidence 3788889986 3 23333344 589999999999999987766432 1110 1121 22333221 Q ss_pred CCCCCeeEEEecccccccChH-HHHHHHhhcc-cCCcEEEE Q psy2408 152 FDNDSFDGGWFFESIFHMNHS-AALNEARRVL-KSGSILTL 190 (298) Q Consensus 152 ~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~L-kpgG~l~i 190 (298) ...|+|+-+ +.+...-. .++..+..++ +|+..+.- T Consensus 83 ---~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~s 119 (286) T PRK07819 83 ---ADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLAS 119 (286) T ss_pred ---CCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEE Confidence 456777542 33333333 8888888888 66655443 No 438 >PRK13771 putative alcohol dehydrogenase; Provisional Probab=86.36 E-value=5.1 Score=34.55 Aligned_cols=98 Identities=21% Similarity=0.278 Sum_probs=61.9 Q ss_pred hCCCCCCCeEEEeCCC--CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEE Q psy2408 83 KTSITKGQRFIDIGCG--FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGG 160 (298) Q Consensus 83 ~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V 160 (298) .+.+.++.+||=.|++ .|..+..+++..|.++++++.+++..+.++.. ...-+..+ .+ ..++..+ +.+|++ T Consensus 157 ~~~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~~~~~~-~~-~~~v~~~----~~~d~~ 229 (334) T PRK13771 157 RAGVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKY-ADYVIVGS-KF-SEEVKKI----GGADIV 229 (334) T ss_pred hcCCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHhcCch-hH-HHHHHhc----CCCcEE Confidence 3466788899999983 37777888887899999999998888877554 22111111 00 0011111 247877 Q ss_pred EecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 161 WFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 161 ~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) +... .. ..+..+.+.|+++|+++.... T Consensus 230 ld~~-----g~-~~~~~~~~~l~~~G~~v~~g~ 256 (334) T PRK13771 230 IETV-----GT-PTLEESLRSLNMGGKIIQIGN 256 (334) T ss_pred EEcC-----Ch-HHHHHHHHHHhcCCEEEEEec Confidence 6432 12 345677888999999887644 No 439 >PRK07806 short chain dehydrogenase; Provisional Probab=86.30 E-value=9.8 Score=31.11 Aligned_cols=102 Identities=17% Similarity=0.098 Sum_probs=58.1 Q ss_pred CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCH-HHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CC----- Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISK-FQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FD----- 153 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~-~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~----- 153 (298) .+.++|-.|+ +|.++..+++. .|.+|++++.+. ...+.....+...+ .++.++.+|+.+.. +. T Consensus 5 ~~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248) T PRK07806 5 PGKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE 81 (248) T ss_pred CCcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh Confidence 3568888885 44555556554 377898887654 23333333333322 35778888987641 00 Q ss_pred CCCeeEEEeccccccc-------------ChH-HHHHHHhhcccCCcEEEEEe Q psy2408 154 NDSFDGGWFFESIFHM-------------NHS-AALNEARRVLKSGSILTLTD 192 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~-------------~~~-~~l~~~~r~LkpgG~l~i~~ 192 (298) -+..|+|+.+...... ... .+++.+.+.++.+|++++.. T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248) T PRK07806 82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248) T ss_pred CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe Confidence 1357887765432110 012 66677777766667766543 No 440 >KOG1197|consensus Probab=86.19 E-value=5 Score=33.28 Aligned_cols=103 Identities=14% Similarity=0.135 Sum_probs=68.3 Q ss_pred HHhCCCCCCCeEEEeC--CCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC--CCC-CC Q psy2408 81 INKTSITKGQRFIDIG--CGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL--PFD-ND 155 (298) Q Consensus 81 ~~~~~~~~~~~vLDiG--cG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~-~~ 155 (298) .+..++++|.+||--. .|.|.+...+++..++++++.--+.+-.+.+++. |...-|.....|+.+- .+. .. T Consensus 139 ~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~v~~V~kiTngK 214 (336) T KOG1197|consen 139 FEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDYVDEVKKITNGK 214 (336) T ss_pred HHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhc----CCcceeeccchhHHHHHHhccCCC Confidence 4456788999887643 4567778888887788998888887777777655 4333355555555331 222 35 Q ss_pred CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) ..|+++-+-.. ..+..-..+|||+|.++-... T Consensus 215 GVd~vyDsvG~------dt~~~sl~~Lk~~G~mVSfG~ 246 (336) T KOG1197|consen 215 GVDAVYDSVGK------DTFAKSLAALKPMGKMVSFGN 246 (336) T ss_pred Cceeeeccccc------hhhHHHHHHhccCceEEEecc Confidence 68887632222 567778889999999776443 No 441 >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Probab=86.17 E-value=17 Score=30.77 Aligned_cols=96 Identities=25% Similarity=0.314 Sum_probs=61.9 Q ss_pred hCCCCCCCeEEEeCC--CCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC--CCC-C-CCCCCC Q psy2408 83 KTSITKGQRFIDIGC--GFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD--ALN-L-PFDNDS 156 (298) Q Consensus 83 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d--~~~-~-~~~~~~ 156 (298) ...+.++.+||=.|+ +.|..+..+++..|+++++++.+++..+.+++ .+.. .++... ... + .. ... T Consensus 137 ~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~i~~~-~~~ 208 (320) T cd08243 137 SLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKE----LGAD---EVVIDDGAIAEQLRAA-PGG 208 (320) T ss_pred hcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCc---EEEecCccHHHHHHHh-CCC Confidence 344678889999986 34777888888789999999999877666643 2331 111111 100 0 12 356 Q ss_pred eeEEEecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 157 FDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 157 fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) +|+|+.+.. . ..+..+.+.|+++|+++... T Consensus 209 ~d~vl~~~~-----~-~~~~~~~~~l~~~g~~v~~g 238 (320) T cd08243 209 FDKVLELVG-----T-ATLKDSLRHLRPGGIVCMTG 238 (320) T ss_pred ceEEEECCC-----h-HHHHHHHHHhccCCEEEEEc Confidence 888874321 2 45777889999999987654 No 442 >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated Probab=85.94 E-value=4.1 Score=34.62 Aligned_cols=94 Identities=17% Similarity=0.140 Sum_probs=52.3 Q ss_pred eEEEeCCCC-CH-HHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-------cC-CC--------CceEEEECCCCCCCC Q psy2408 91 RFIDIGCGF-GL-SGIRLAKAKGCRVDGITISKFQQESAMKTAKA-------EG-LL--------DKVNFLHGDALNLPF 152 (298) Q Consensus 91 ~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~-------~~-~~--------~~i~~~~~d~~~~~~ 152 (298) +|.=||+|. |. ++..+++ .|.+|+.+|.+++.++.+.+.... .+ +. .++. ...+..+. T Consensus 3 ~V~VIG~G~mG~~iA~~la~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~~-- 78 (288) T PRK09260 3 KLVVVGAGVMGRGIAYVFAV-SGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLS-YSLDLKAA-- 78 (288) T ss_pred EEEEECccHHHHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCcHHHh-- Confidence 577788875 32 2333333 578999999999999887764321 11 00 1122 12232221 Q ss_pred CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEE Q psy2408 153 DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTL 190 (298) Q Consensus 153 ~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i 190 (298) -...|+|+.+-. ....-. .++.++.+.++|+..+.+ T Consensus 79 -~~~aD~Vi~avp-e~~~~k~~~~~~l~~~~~~~~il~~ 115 (288) T PRK09260 79 -VADADLVIEAVP-EKLELKKAVFETADAHAPAECYIAT 115 (288) T ss_pred -hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCcEEEE Confidence 145688865322 211112 677788888888765544 No 443 >PRK07109 short chain dehydrogenase; Provisional Probab=85.89 E-value=14 Score=32.09 Aligned_cols=76 Identities=16% Similarity=0.085 Sum_probs=50.9 Q ss_pred CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-C---------CC Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-F---------DN 154 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~---------~~ 154 (298) .+.+||=.|+ +|.++..+++. .|++|+.++.++..++...+.+...+ .++.++.+|+.+.. . .- T Consensus 7 ~~k~vlITGa-s~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334) T PRK07109 7 GRQVVVITGA-SAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEEL 83 (334) T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHC Confidence 3557887775 45555555544 47899999999887777666665444 35788889987741 0 01 Q ss_pred CCeeEEEecccc Q psy2408 155 DSFDGGWFFESI 166 (298) Q Consensus 155 ~~fD~V~~~~~l 166 (298) +.+|+++.+... T Consensus 84 g~iD~lInnAg~ 95 (334) T PRK07109 84 GPIDTWVNNAMV 95 (334) T ss_pred CCCCEEEECCCc Confidence 468998876544 No 444 >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. Probab=85.80 E-value=8.5 Score=37.28 Aligned_cols=146 Identities=13% Similarity=0.057 Sum_probs=82.0 Q ss_pred CeEEEeCCCC-CHHHHH-HHHhcCCeEEEEeCCHHHHHHHHHHHHh-------cC-C--------CCceEEEECCCCCCC Q psy2408 90 QRFIDIGCGF-GLSGIR-LAKAKGCRVDGITISKFQQESAMKTAKA-------EG-L--------LDKVNFLHGDALNLP 151 (298) Q Consensus 90 ~~vLDiGcG~-G~~~~~-l~~~~~~~v~~vD~s~~~l~~a~~~~~~-------~~-~--------~~~i~~~~~d~~~~~ 151 (298) .+|.-||+|+ |.-... ++...|..|+.+|++++.++.+..++.. .+ + ..++++. .|...+ T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~- 382 (699) T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDYRGF- 382 (699) T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CChHHh- Confidence 4799999998 333222 3323588999999999998888766431 11 1 0133322 233221 Q ss_pred CCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh--------hcc-------- Q psy2408 152 FDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK--------NIH-------- 214 (298) Q Consensus 152 ~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~--------~~~-------- 214 (298) ...|+|+= .+.+.+.-. ++++++-.+++|+..|.-.+... + .......... +.. T Consensus 383 ---~~adlViE-av~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l----~-i~~la~~~~~p~r~~g~HffnP~~~~~lV 453 (699) T TIGR02440 383 ---KDVDIVIE-AVFEDLALKHQMVKDIEQECAAHTIFASNTSSL----P-IGQIAAAASRPENVIGLHYFSPVEKMPLV 453 (699) T ss_pred ---ccCCEEEE-eccccHHHHHHHHHHHHhhCCCCcEEEeCCCCC----C-HHHHHHhcCCcccEEEEecCCccccCceE Confidence 45777753 234444444 99999999999997665433221 1 1111111100 000 Q ss_pred ---cCCCC----cchHHHHHHhCCCcEEEEEeCCCCccc Q psy2408 215 ---SNFIL----VEHYPDLLNKSGFELIKIDDITSHVMP 246 (298) Q Consensus 215 ---~~~~~----~~~~~~~l~~~Gf~~~~~~~~~~~~~~ 246 (298) ....| .+...+++++.|...+.+.+.+..+.+ T Consensus 454 Evv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pGfi~n 492 (699) T TIGR02440 454 EVIPHAGTSEQTIATTVALAKKQGKTPIVVADKAGFYVN 492 (699) T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCeEEEEccccchHHH Confidence 01112 344556788899999988776655544 No 445 >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH Probab=85.80 E-value=3.9 Score=35.11 Aligned_cols=94 Identities=15% Similarity=0.187 Sum_probs=58.5 Q ss_pred CCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC-CC--CCC-CCCCCCeeEEE Q psy2408 88 KGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG-DA--LNL-PFDNDSFDGGW 161 (298) Q Consensus 88 ~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~-d~--~~~-~~~~~~fD~V~ 161 (298) ++.+||=.|+ | .|..+..+++..|.++++++.+++..+.+++. +.. .++.. +. ..+ ......+|+|+ T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~---~v~~~~~~~~~~~~~~~~~~~d~vl 218 (326) T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKL----GAK---EVIPREELQEESIKPLEKQRWAGAV 218 (326) T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc----CCC---EEEcchhHHHHHHHhhccCCcCEEE Confidence 4678999987 4 36677777777889999999998877766432 321 11111 10 001 11234588875 Q ss_pred ecccccccChHHHHHHHhhcccCCcEEEEEeCC Q psy2408 162 FFESIFHMNHSAALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 162 ~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 194 (298) -. ... ..+....+.|+++|+++..... T Consensus 219 d~-----~g~-~~~~~~~~~l~~~G~~i~~g~~ 245 (326) T cd08289 219 DP-----VGG-KTLAYLLSTLQYGGSVAVSGLT 245 (326) T ss_pred EC-----CcH-HHHHHHHHHhhcCCEEEEEeec Confidence 32 222 4567788899999998876543 No 446 >PRK05396 tdh L-threonine 3-dehydrogenase; Validated Probab=85.60 E-value=2 Score=37.31 Aligned_cols=96 Identities=20% Similarity=0.275 Sum_probs=59.5 Q ss_pred CCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCCCCCee Q psy2408 87 TKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFDNDSFD 158 (298) Q Consensus 87 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~~fD 158 (298) .++.+||-.|+|. |..+..+++..|. ++++++.++...+.+++. |.. .++...-..+ -.....+| T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~l----g~~---~~~~~~~~~~~~~~~~~~~~~~~d 234 (341) T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM----GAT---RAVNVAKEDLRDVMAELGMTEGFD 234 (341) T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----CCc---EEecCccccHHHHHHHhcCCCCCC Confidence 4678888888764 6666677776787 688888888777665543 321 1221111110 01235688 Q ss_pred EEEecccccccChHHHHHHHhhcccCCcEEEEEeCC Q psy2408 159 GGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 159 ~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 194 (298) +|+... .....+..+.+.|+++|.++..... T Consensus 235 ~v~d~~-----g~~~~~~~~~~~l~~~G~~v~~g~~ 265 (341) T PRK05396 235 VGLEMS-----GAPSAFRQMLDNMNHGGRIAMLGIP 265 (341) T ss_pred EEEECC-----CCHHHHHHHHHHHhcCCEEEEEecC Confidence 886522 1235677788999999998887543 No 447 >PTZ00354 alcohol dehydrogenase; Provisional Probab=85.41 E-value=11 Score=32.38 Aligned_cols=96 Identities=16% Similarity=0.084 Sum_probs=61.5 Q ss_pred CCCCCCCeEEEeCC--CCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC---C-CCC-C--CCCC Q psy2408 84 TSITKGQRFIDIGC--GFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG---D-ALN-L--PFDN 154 (298) Q Consensus 84 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~---d-~~~-~--~~~~ 154 (298) ..+.++.+||=.|+ +.|..+..+++..|.+++.++.+++..+.++. .+.. .++.. + ... + ..+. T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~ 208 (334) T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKK----LAAI---ILIRYPDEEGFAPKVKKLTGE 208 (334) T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc---EEEecCChhHHHHHHHHHhCC Confidence 45678889998884 35777888888788888888888887777743 2321 12211 1 100 0 1123 Q ss_pred CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) ..+|+++.+.. ...+..+.+.|+++|.++... T Consensus 209 ~~~d~~i~~~~------~~~~~~~~~~l~~~g~~i~~~ 240 (334) T PTZ00354 209 KGVNLVLDCVG------GSYLSETAEVLAVDGKWIVYG 240 (334) T ss_pred CCceEEEECCc------hHHHHHHHHHhccCCeEEEEe Confidence 56888875321 246677888999999988754 No 448 >KOG2782|consensus Probab=85.35 E-value=0.54 Score=37.64 Aligned_cols=92 Identities=11% Similarity=0.092 Sum_probs=63.0 Q ss_pred HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC---- Q psy2408 76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL---- 150 (298) Q Consensus 76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~---- 150 (298) +....++.+.+-++.+.+|.--|.|..+..+.+. ...++++.|.+|-.-+.|+....+. .++++..+.+.+..+ T Consensus 31 m~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el-~~~~l~a~Lg~Fs~~~~l~ 109 (303) T KOG2782|consen 31 MLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDEL-MHPTLKAVLGNFSYIKSLI 109 (303) T ss_pred ehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhh-cchhHHHHHhhhHHHHHHH Confidence 4566677777788999999999999888888876 4678999999998888887665422 222233333333332 Q ss_pred ---CCCCCCeeEEEecccccc Q psy2408 151 ---PFDNDSFDGGWFFESIFH 168 (298) Q Consensus 151 ---~~~~~~fD~V~~~~~l~~ 168 (298) .+.+.++|-|++-..... T Consensus 110 ~~~gl~~~~vDGiLmDlGcSS 130 (303) T KOG2782|consen 110 ADTGLLDVGVDGILMDLGCSS 130 (303) T ss_pred HHhCCCcCCcceEEeecCccc Confidence 244678888887544433 No 449 >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina Probab=85.29 E-value=2.1 Score=36.75 Aligned_cols=98 Identities=15% Similarity=0.093 Sum_probs=61.0 Q ss_pred HhCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCC Q psy2408 82 NKTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFD 153 (298) Q Consensus 82 ~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~ 153 (298) ....+.++.+||=.|+ | .|..+..+++..|++++.+.-+.+..+.++. .+.. .++...-..+ ..+ T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~i~~~~~ 205 (324) T cd08292 133 DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRA----LGIG---PVVSTEQPGWQDKVREAAG 205 (324) T ss_pred HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHh----cCCC---EEEcCCCchHHHHHHHHhC Confidence 3456778899998876 3 4777777888789998888777766555543 2321 2222211111 012 Q ss_pred CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) ...+|+|+.+ ... ..+.++.+.|+++|+++... T Consensus 206 ~~~~d~v~d~-----~g~-~~~~~~~~~l~~~g~~v~~g 238 (324) T cd08292 206 GAPISVALDS-----VGG-KLAGELLSLLGEGGTLVSFG 238 (324) T ss_pred CCCCcEEEEC-----CCC-hhHHHHHHhhcCCcEEEEEe Confidence 2468988742 222 24567789999999988754 No 450 >KOG1209|consensus Probab=85.28 E-value=7.7 Score=31.31 Aligned_cols=70 Identities=19% Similarity=0.124 Sum_probs=46.1 Q ss_pred CCCeEEEeCCCCCHHHHHHHHhc---CCeEEEEeCCHH-HHHHHHHHHHhcCCCCceEEEECCCCCC-----------CC Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKAK---GCRVDGITISKF-QQESAMKTAKAEGLLDKVNFLHGDALNL-----------PF 152 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~~---~~~v~~vD~s~~-~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----------~~ 152 (298) ....||-.||..|.++..+++.+ |+.|++.--+.+ |-+.+.+ .| +.....|+.+. .+ T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~----~g----l~~~kLDV~~~~~V~~v~~evr~~ 77 (289) T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ----FG----LKPYKLDVSKPEEVVTVSGEVRAN 77 (289) T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh----hC----CeeEEeccCChHHHHHHHHHHhhC Confidence 45689999999999999998863 788888765543 3333221 22 44556666542 24 Q ss_pred CCCCeeEEEeccc Q psy2408 153 DNDSFDGGWFFES 165 (298) Q Consensus 153 ~~~~fD~V~~~~~ 165 (298) ++++.|+.+.+.. T Consensus 78 ~~Gkld~L~NNAG 90 (289) T KOG1209|consen 78 PDGKLDLLYNNAG 90 (289) T ss_pred CCCceEEEEcCCC Confidence 6788888876433 No 451 >cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino Probab=85.15 E-value=9.2 Score=32.79 Aligned_cols=98 Identities=20% Similarity=0.165 Sum_probs=60.9 Q ss_pred hCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----CCCCC Q psy2408 83 KTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----PFDND 155 (298) Q Consensus 83 ~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~ 155 (298) ...+.++.+||=.|+ | .|..+..+++..|+++++++.++...+.+++.+ +.. .++..+-.++ ..... T Consensus 140 ~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~v~~~~~~ 213 (329) T cd05288 140 IGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEEL---GFD---AAINYKTPDLAEALKEAAPD 213 (329) T ss_pred ccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhc---CCc---eEEecCChhHHHHHHHhccC Confidence 345567889998884 3 467777777777899999998887777665422 221 1222111010 01124 Q ss_pred CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) .+|+++.+. .. ..+....+.++++|+++... T Consensus 214 ~~d~vi~~~-----g~-~~~~~~~~~l~~~G~~v~~g 244 (329) T cd05288 214 GIDVYFDNV-----GG-EILDAALTLLNKGGRIALCG 244 (329) T ss_pred CceEEEEcc-----hH-HHHHHHHHhcCCCceEEEEe Confidence 688886432 11 46777888899999987653 No 452 >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated Probab=84.99 E-value=5.2 Score=33.99 Aligned_cols=94 Identities=17% Similarity=0.080 Sum_probs=52.8 Q ss_pred CeEEEeCCCC-CHH-HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc--------CCC---------CceEEEECCCCCC Q psy2408 90 QRFIDIGCGF-GLS-GIRLAKAKGCRVDGITISKFQQESAMKTAKAE--------GLL---------DKVNFLHGDALNL 150 (298) Q Consensus 90 ~~vLDiGcG~-G~~-~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~--------~~~---------~~i~~~~~d~~~~ 150 (298) .+|.=||+|. |.. +..++. .|.+|+.+|.+++.++.+++.+... .+. .++. ...|..+. T Consensus 4 ~kIaViGaG~mG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~d~~~a 81 (287) T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF-HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT-LTTDLAEA 81 (287) T ss_pred cEEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE-EeCCHHHH Confidence 3678888886 322 333333 5789999999999988887653211 110 1222 22333221 Q ss_pred CCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEE Q psy2408 151 PFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILT 189 (298) Q Consensus 151 ~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~ 189 (298) -...|+|+..-. +...-. .+++++...++++..+. T Consensus 82 ---~~~aDlVieavp-e~~~~k~~~~~~l~~~~~~~~ii~ 117 (287) T PRK08293 82 ---VKDADLVIEAVP-EDPEIKGDFYEELAKVAPEKTIFA 117 (287) T ss_pred ---hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCCEEE Confidence 135687765321 222223 77888888887776543 No 453 >PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional Probab=84.73 E-value=3.3 Score=35.79 Aligned_cols=99 Identities=18% Similarity=0.173 Sum_probs=62.1 Q ss_pred HhCCCCCCCeEEEeCCCC-CHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC-CC----C-CCC Q psy2408 82 NKTSITKGQRFIDIGCGF-GLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA-LN----L-PFD 153 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~-~~----~-~~~ 153 (298) ....+.++.+||=.|+|. |..+..+++. .|.++++++.+++..+.+++. +.. .++.... .. + ... T Consensus 156 ~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~----g~~---~v~~~~~~~~~~~~v~~~~ 228 (338) T PRK09422 156 KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEV----GAD---LTINSKRVEDVAKIIQEKT 228 (338) T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHc----CCc---EEecccccccHHHHHHHhc Confidence 455677899999999764 6667777776 488999999999888877432 321 1121110 11 0 011 Q ss_pred CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) +.+|.++... .....+..+.+.|+++|.++.... T Consensus 229 -~~~d~vi~~~-----~~~~~~~~~~~~l~~~G~~v~~g~ 262 (338) T PRK09422 229 -GGAHAAVVTA-----VAKAAFNQAVDAVRAGGRVVAVGL 262 (338) T ss_pred -CCCcEEEEeC-----CCHHHHHHHHHhccCCCEEEEEee Confidence 2467443211 123567888999999999887643 No 454 >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone Probab=84.48 E-value=3.5 Score=35.42 Aligned_cols=98 Identities=18% Similarity=0.149 Sum_probs=59.9 Q ss_pred HhCCCCCCCeEEEeCCCC--CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCC Q psy2408 82 NKTSITKGQRFIDIGCGF--GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFD 153 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~ 153 (298) ....+.++.+||-.|++. |..+..++...|.+++.++.++...+.++. .+.. ..+...-... ... T Consensus 160 ~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~ 232 (342) T cd08266 160 TRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKE----LGAD---YVIDYRKEDFVREVRELTG 232 (342) T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---eEEecCChHHHHHHHHHhC Confidence 445567888999988763 566666666678899999998877666533 2221 1111110000 012 Q ss_pred CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) ...+|+++....- ..+..+.+.++++|.++... T Consensus 233 ~~~~d~~i~~~g~------~~~~~~~~~l~~~G~~v~~~ 265 (342) T cd08266 233 KRGVDVVVEHVGA------ATWEKSLKSLARGGRLVTCG 265 (342) T ss_pred CCCCcEEEECCcH------HHHHHHHHHhhcCCEEEEEe Confidence 3468888754321 34566778889999987754 No 455 >COG4017 Uncharacterized protein conserved in archaea [Function unknown] Probab=84.27 E-value=10 Score=29.98 Aligned_cols=97 Identities=13% Similarity=0.078 Sum_probs=59.6 Q ss_pred HHHHHhCCCCCCCeEEEeCCC-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC Q psy2408 78 RIMINKTSITKGQRFIDIGCG-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS 156 (298) Q Consensus 78 ~~l~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 156 (298) +.+........+..||-+|.= +|.....+... .++|+.+|+.+.|-.. +++++.|... +.++.+. T Consensus 34 ~ai~~~~~~~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~---------lp~~v~Fr~~----~~~~~G~ 99 (254) T COG4017 34 QAIRDFLEGEEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGF---------LPNNVKFRNL----LKFIRGE 99 (254) T ss_pred HHhhhhhcccCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhc---------CCCCccHhhh----cCCCCCc Confidence 333333444567899999987 57665555542 6899999999865332 3455666554 2345688 Q ss_pred eeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC Q psy2408 157 FDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 157 fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 194 (298) +|+|+-.-.+--+.. .+| +-+.|+ .+++.++. T Consensus 100 ~DlivDlTGlGG~~P-e~L----~~fnp~-vfiVEdP~ 131 (254) T COG4017 100 VDLIVDLTGLGGIEP-EFL----AKFNPK-VFIVEDPK 131 (254) T ss_pred eeEEEeccccCCCCH-HHH----hccCCc-eEEEECCC Confidence 999997666554433 333 334554 55555443 No 456 >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, Probab=83.91 E-value=5.4 Score=34.36 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=26.3 Q ss_pred CCCCeEEEeCCCC-CHHHHHHHHhcC-CeEEEEeCCHHHHH Q psy2408 87 TKGQRFIDIGCGF-GLSGIRLAKAKG-CRVDGITISKFQQE 125 (298) Q Consensus 87 ~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~~vD~s~~~l~ 125 (298) .++.+|+-+|+|. |..........+ ..++.+|.+++... T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~ 216 (311) T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAE 216 (311) T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH Confidence 3688999999975 544333333334 58999999986543 No 457 >PTZ00075 Adenosylhomocysteinase; Provisional Probab=83.84 E-value=2.3 Score=38.66 Aligned_cols=99 Identities=17% Similarity=0.105 Sum_probs=59.3 Q ss_pred HHHHHhCCC-CCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCC Q psy2408 78 RIMINKTSI-TKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDND 155 (298) Q Consensus 78 ~~l~~~~~~-~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 155 (298) +.+++.... -.|.+|+=+|+|. |......++..|++|+++|.++.....+.. .| ..+ .++.++ -. T Consensus 242 d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~----~G----~~~--~~leel---l~ 308 (476) T PTZ00075 242 DGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM----EG----YQV--VTLEDV---VE 308 (476) T ss_pred HHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh----cC----cee--ccHHHH---Hh Confidence 444444322 3688999999996 555555555568999999888764433321 12 221 122222 14 Q ss_pred CeeEEEecccccccChHHHH-HHHhhcccCCcEEEEEeCC Q psy2408 156 SFDGGWFFESIFHMNHSAAL-NEARRVLKSGSILTLTDLP 194 (298) Q Consensus 156 ~fD~V~~~~~l~~~~~~~~l-~~~~r~LkpgG~l~i~~~~ 194 (298) ..|+|++.- ....++ .+....+|||++|+-.... T Consensus 309 ~ADIVI~at-----Gt~~iI~~e~~~~MKpGAiLINvGr~ 343 (476) T PTZ00075 309 TADIFVTAT-----GNKDIITLEHMRRMKNNAIVGNIGHF 343 (476) T ss_pred cCCEEEECC-----CcccccCHHHHhccCCCcEEEEcCCC Confidence 679987642 223344 4778889999988775444 No 458 >PRK07417 arogenate dehydrogenase; Reviewed Probab=83.70 E-value=7.3 Score=32.93 Aligned_cols=83 Identities=22% Similarity=0.179 Sum_probs=46.5 Q ss_pred eEEEeCCCC--CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccc Q psy2408 91 RFIDIGCGF--GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFH 168 (298) Q Consensus 91 ~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 168 (298) +|.=||+|. |.++..+.+ .|.+|+++|.++..++.+... +. +.....+... -...|+|+..-.... T Consensus 2 ~I~IIG~G~mG~sla~~L~~-~g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~~~----~~~aDlVilavp~~~ 69 (279) T PRK07417 2 KIGIVGLGLIGGSLGLDLRS-LGHTVYGVSRRESTCERAIER----GL---VDEASTDLSL----LKDCDLVILALPIGL 69 (279) T ss_pred eEEEEeecHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHC----CC---cccccCCHhH----hcCCCEEEEcCCHHH Confidence 566788775 334444544 478999999999887776543 21 1111111111 145788876432211 Q ss_pred cChHHHHHHHhhcccCCcE Q psy2408 169 MNHSAALNEARRVLKSGSI 187 (298) Q Consensus 169 ~~~~~~l~~~~r~LkpgG~ 187 (298) .. .+++++...++++.. T Consensus 70 ~~--~~~~~l~~~l~~~~i 86 (279) T PRK07417 70 LL--PPSEQLIPALPPEAI 86 (279) T ss_pred HH--HHHHHHHHhCCCCcE Confidence 10 667777777776643 No 459 >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated Probab=83.67 E-value=14 Score=31.42 Aligned_cols=93 Identities=19% Similarity=0.081 Sum_probs=52.3 Q ss_pred CeEEEeCCCC-CH-HHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-------cCC-C--------CceEEEECCCCCCC Q psy2408 90 QRFIDIGCGF-GL-SGIRLAKAKGCRVDGITISKFQQESAMKTAKA-------EGL-L--------DKVNFLHGDALNLP 151 (298) Q Consensus 90 ~~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~-------~~~-~--------~~i~~~~~d~~~~~ 151 (298) .+|.=||+|. |. ++..++. .|..|+.+|.+++.++.+.+.+.. .+. + .++.+ ..|... T Consensus 5 ~kI~vIGaG~mG~~iA~~la~-~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-- 80 (292) T PRK07530 5 KKVGVIGAGQMGNGIAHVCAL-AGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED-- 80 (292) T ss_pred CEEEEECCcHHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH-- Confidence 4688888886 32 2333333 578999999999988876554321 121 0 11222 223322 Q ss_pred CCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEE Q psy2408 152 FDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILT 189 (298) Q Consensus 152 ~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~ 189 (298) -...|+|+..- .+...-. .+++++...++|+..++ T Consensus 81 --~~~aD~Vieav-pe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292) T PRK07530 81 --LADCDLVIEAA-TEDETVKRKIFAQLCPVLKPEAILA 116 (292) T ss_pred --hcCCCEEEEcC-cCCHHHHHHHHHHHHhhCCCCcEEE Confidence 13568776421 1111112 77788888888887654 No 460 >KOG1098|consensus Probab=83.61 E-value=2.3 Score=39.49 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=30.7 Q ss_pred CCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCH Q psy2408 86 ITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISK 121 (298) Q Consensus 86 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~ 121 (298) +.++..|||+||.+|.+....++.+ +.-|+|+|+-| T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780) T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780) T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee Confidence 4678899999999999998888864 56899999865 No 461 >cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma Probab=83.42 E-value=2.6 Score=37.48 Aligned_cols=46 Identities=24% Similarity=0.371 Sum_probs=36.6 Q ss_pred CCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHH Q psy2408 84 TSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMK 129 (298) Q Consensus 84 ~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~ 129 (298) ..+.++.+||=.|+ | .|..+..+++..|+++++++.+++..+.+++ T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~ 236 (393) T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRA 236 (393) T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH Confidence 35677889999997 4 3777777888789998999999988887765 No 462 >PRK06701 short chain dehydrogenase; Provisional Probab=83.32 E-value=9.8 Score=32.26 Aligned_cols=102 Identities=18% Similarity=0.104 Sum_probs=59.2 Q ss_pred CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCH-HHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CC----- Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISK-FQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FD----- 153 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~-~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~----- 153 (298) .+.+||-.|+ +|.++..+++. .|++|+.++.++ ..++.....+...+ .++.++..|+.+.. +. T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290) T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVRE 121 (290) T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH Confidence 4568888885 44555555544 478999998764 23333333333333 35778889987631 10 Q ss_pred CCCeeEEEeccccccc----C----------------hH-HHHHHHhhcccCCcEEEEEe Q psy2408 154 NDSFDGGWFFESIFHM----N----------------HS-AALNEARRVLKSGSILTLTD 192 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~----~----------------~~-~~l~~~~r~LkpgG~l~i~~ 192 (298) .+.+|+|+.+...... . .+ .+++.+.+.++++|.+++.. T Consensus 122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290) T PRK06701 122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290) T ss_pred cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe Confidence 1367888865443211 0 11 55556666677777776654 No 463 >cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i Probab=83.31 E-value=19 Score=31.13 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=60.8 Q ss_pred HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC----C-----C Q psy2408 82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL----N-----L 150 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~----~-----~ 150 (298) ....+.++.+||=.|+|. |..+..+++..|+. +++++.++...+.+++. +. ..++..+-. . . T Consensus 155 ~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~---~~~i~~~~~~~~~~~~~~~~ 227 (341) T cd08262 155 RRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAM----GA---DIVVDPAADSPFAAWAAELA 227 (341) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CC---cEEEcCCCcCHHHHHHHHHH Confidence 455667889999998653 55556666666775 88888888877776543 22 112221111 0 0 Q ss_pred CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 151 PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 151 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) ....+.+|+|+-. ......+.++.+.++++|+++.... T Consensus 228 ~~~~~~~d~vid~-----~g~~~~~~~~~~~l~~~g~~v~~g~ 265 (341) T cd08262 228 RAGGPKPAVIFEC-----VGAPGLIQQIIEGAPPGGRIVVVGV 265 (341) T ss_pred HhCCCCCCEEEEC-----CCCHHHHHHHHHHhccCCEEEEECC Confidence 1123568888642 2222456777888999999887643 No 464 >TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Probab=83.29 E-value=2.7 Score=36.34 Aligned_cols=64 Identities=22% Similarity=0.205 Sum_probs=45.7 Q ss_pred EEEeCCCCCHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC-CCCeeEEEec Q psy2408 92 FIDIGCGFGLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD-NDSFDGGWFF 163 (298) Q Consensus 92 vLDiGcG~G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~V~~~ 163 (298) |+|+-||.|.++.-+.+ .|.+ +.++|+++...+.-+.++.. .++..|+.++... -..+|+++.. T Consensus 1 vidLF~G~GG~~~Gl~~-aG~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~~~~~~dvl~gg 66 (315) T TIGR00675 1 FIDLFAGIGGIRLGFEQ-AGFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPSDIPDFDILLGG 66 (315) T ss_pred CEEEecCccHHHHHHHH-cCCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhhhCCCcCEEEec Confidence 68999999999988876 5665 56799999888877776532 3456777766321 1358988764 No 465 >cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous Probab=83.06 E-value=8.3 Score=32.93 Aligned_cols=104 Identities=22% Similarity=0.222 Sum_probs=57.3 Q ss_pred HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeC--CHHHHHHHHHHHHhcCCCCceEEEECCCCC-C--CCCC Q psy2408 81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITI--SKFQQESAMKTAKAEGLLDKVNFLHGDALN-L--PFDN 154 (298) Q Consensus 81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~--s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~--~~~~ 154 (298) .....+.++.+||-.|+|. |..+..+++..|.+++.+.. +....+.++. .++.. +.....+... + ..+. T Consensus 157 ~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~~l~~~~~~ 231 (306) T cd08258 157 AERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKE----LGADA-VNGGEEDLAELVNEITDG 231 (306) T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHH----hCCcc-cCCCcCCHHHHHHHHcCC Confidence 3445567788888866543 55566667767888877643 3333444333 23211 1111111100 0 0123 Q ss_pred CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC Q psy2408 155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 194 (298) ..+|+++-+. .....+....+.|+++|+++..... T Consensus 232 ~~vd~vld~~-----g~~~~~~~~~~~l~~~G~~v~~g~~ 266 (306) T cd08258 232 DGADVVIECS-----GAVPALEQALELLRKGGRIVQVGIF 266 (306) T ss_pred CCCCEEEECC-----CChHHHHHHHHHhhcCCEEEEEccc Confidence 5688876432 2225777888999999998876554 No 466 >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Probab=83.00 E-value=10 Score=36.13 Aligned_cols=91 Identities=18% Similarity=0.091 Sum_probs=58.5 Q ss_pred CCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----CCCCCeeEEEec Q psy2408 89 GQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----FDNDSFDGGWFF 163 (298) Q Consensus 89 ~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~~ 163 (298) ..+|+=+|||. |.......+..+..++.+|.+++.++.+++. + ..++.+|..+.. ..-++.|++++. T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g----~~v~~GDat~~~~L~~agi~~A~~vvv~ 471 (621) T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF----G----MKVFYGDATRMDLLESAGAAKAEVLINA 471 (621) T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc----C----CeEEEEeCCCHHHHHhcCCCcCCEEEEE Confidence 35888888886 6654444443578999999999998888652 2 568999998752 123467777642 Q ss_pred ccccccChH---HHHHHHhhcccCCcEEEEEe Q psy2408 164 ESIFHMNHS---AALNEARRVLKSGSILTLTD 192 (298) Q Consensus 164 ~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~ 192 (298) .+++ ..+-...|.+.|+-.++... T Consensus 472 -----~~d~~~n~~i~~~ar~~~p~~~iiaRa 498 (621) T PRK03562 472 -----IDDPQTSLQLVELVKEHFPHLQIIARA 498 (621) T ss_pred -----eCCHHHHHHHHHHHHHhCCCCeEEEEE Confidence 2333 33334455566776665543 No 467 >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha Probab=82.84 E-value=4.3 Score=35.15 Aligned_cols=98 Identities=23% Similarity=0.263 Sum_probs=62.5 Q ss_pred CCCCCCCeEEEeCCC--CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC----C--CCCCC Q psy2408 84 TSITKGQRFIDIGCG--FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN----L--PFDND 155 (298) Q Consensus 84 ~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~----~--~~~~~ 155 (298) ..+.++.+||=.|+| .|..+..+++..|.+++++..+++..+.++. .+.. .++...-.+ + ..+.. T Consensus 161 ~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~~~~~ 233 (341) T cd08297 161 AGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKE----LGAD---AFVDFKKSDDVEAVKELTGGG 233 (341) T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCCc---EEEcCCCccHHHHHHHHhcCC Confidence 466788999998876 4777777888789999999999876665532 2321 111111101 0 01235 Q ss_pred CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) .+|+|+... .....+..+.+.++++|+++.... T Consensus 234 ~vd~vl~~~-----~~~~~~~~~~~~l~~~g~~v~~g~ 266 (341) T cd08297 234 GAHAVVVTA-----VSAAAYEQALDYLRPGGTLVCVGL 266 (341) T ss_pred CCCEEEEcC-----CchHHHHHHHHHhhcCCEEEEecC Confidence 688887311 112466778899999999987643 No 468 >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. Probab=82.83 E-value=5.6 Score=31.83 Aligned_cols=94 Identities=12% Similarity=0.030 Sum_probs=50.5 Q ss_pred CCCeEEEeCCCC-CHH-HHHHHHhcCC-eEEEEeCC---HHHHH---------------HHHHHHHhcCCCCceEEEECC Q psy2408 88 KGQRFIDIGCGF-GLS-GIRLAKAKGC-RVDGITIS---KFQQE---------------SAMKTAKAEGLLDKVNFLHGD 146 (298) Q Consensus 88 ~~~~vLDiGcG~-G~~-~~~l~~~~~~-~v~~vD~s---~~~l~---------------~a~~~~~~~~~~~~i~~~~~d 146 (298) ...+|+-+|||. |.. +..+++ .|. +++.+|.+ +..+. .+.+.+.......++..+..+ T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~-~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~ 98 (200) T TIGR02354 20 EQATVAICGLGGLGSNVAINLAR-AGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEK 98 (200) T ss_pred hCCcEEEECcCHHHHHHHHHHHH-cCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeee Confidence 346899999985 443 444444 565 79999987 33222 223333332322234444444 Q ss_pred CCCCCCC--CCCeeEEEecccccccChH-HHHHHHhhcccC Q psy2408 147 ALNLPFD--NDSFDGGWFFESIFHMNHS-AALNEARRVLKS 184 (298) Q Consensus 147 ~~~~~~~--~~~fD~V~~~~~l~~~~~~-~~l~~~~r~Lkp 184 (298) +..-... -..+|+|+.. ....... .+++.+.+.+++ T Consensus 99 i~~~~~~~~~~~~DlVi~a--~Dn~~~k~~l~~~~~~~~~~ 137 (200) T TIGR02354 99 ITEENIDKFFKDADIVCEA--FDNAEAKAMLVNAVLEKYKD 137 (200) T ss_pred CCHhHHHHHhcCCCEEEEC--CCCHHHHHHHHHHHHHHcCC Confidence 3321110 1468998865 3443444 666777777664 No 469 >PRK10669 putative cation:proton antiport protein; Provisional Probab=82.72 E-value=11 Score=35.36 Aligned_cols=89 Identities=13% Similarity=0.045 Sum_probs=54.3 Q ss_pred CeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----CCCCCeeEEEecc Q psy2408 90 QRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----FDNDSFDGGWFFE 164 (298) Q Consensus 90 ~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~~~ 164 (298) .+|+=+|||. |.......+..+..++.+|.+++.++.+++. ....+.+|..+.. ..-+++|.++.. T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a~i~~a~~viv~- 488 (558) T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLAHLDCARWLLLT- 488 (558) T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhcCccccCEEEEE- Confidence 5777777775 4443333333478999999999888877642 2678999998741 123567766432 Q ss_pred cccccChH---HHHHHHhhcccCCcEEEEE Q psy2408 165 SIFHMNHS---AALNEARRVLKSGSILTLT 191 (298) Q Consensus 165 ~l~~~~~~---~~l~~~~r~LkpgG~l~i~ 191 (298) .++. ..+-...|...|...++.. T Consensus 489 ----~~~~~~~~~iv~~~~~~~~~~~iiar 514 (558) T PRK10669 489 ----IPNGYEAGEIVASAREKRPDIEIIAR 514 (558) T ss_pred ----cCChHHHHHHHHHHHHHCCCCeEEEE Confidence 2222 2233334556777766654 No 470 >KOG1269|consensus Probab=82.52 E-value=6.6 Score=34.61 Aligned_cols=108 Identities=19% Similarity=0.122 Sum_probs=70.2 Q ss_pred CCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC-CCCceEEEECCCCCC---------------- Q psy2408 89 GQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEG-LLDKVNFLHGDALNL---------------- 150 (298) Q Consensus 89 ~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~-~~~~i~~~~~d~~~~---------------- 150 (298) +.++||.+|+.+.....+++.++ .+--|+++..+.+..+...-...+ ......+..+|+... T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~ 260 (364) T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGF 260 (364) T ss_pred cEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccc Confidence 56999999999999999988643 466778888777776665533311 111223333332221 Q ss_pred -------------CCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCC Q psy2408 151 -------------PFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVS 199 (298) Q Consensus 151 -------------~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~ 199 (298) +++..++|. ..++.|+++. .++......++|+|.+++.+.....+- T Consensus 261 ~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~~p~ 320 (364) T KOG1269|consen 261 EHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKSALFRGRVATLKPGGKVLILEYIRGLPE 320 (364) T ss_pred hhhhhcccccCCCccccccccc---hhheeecccccHHHHhHhhccCcCceEEehhhcCcCCc Confidence 112233444 5667777777 888899999999999999877654433 No 471 >PRK06940 short chain dehydrogenase; Provisional Probab=82.50 E-value=24 Score=29.57 Aligned_cols=96 Identities=20% Similarity=0.144 Sum_probs=59.1 Q ss_pred eEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----C----CCCCeeE Q psy2408 91 RFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----F----DNDSFDG 159 (298) Q Consensus 91 ~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~----~~~~fD~ 159 (298) .+|=.|+ |.++..+++.+ |.+|+++|.++..++...+.+...+ .++.++..|+.+.. + ..+.+|+ T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275) T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275) T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCCE Confidence 5565564 46777777653 7899999998877666655554433 35778888887641 0 1256899 Q ss_pred EEecccccccC-h-----------H-HHHHHHhhcccCCcEEEE Q psy2408 160 GWFFESIFHMN-H-----------S-AALNEARRVLKSGSILTL 190 (298) Q Consensus 160 V~~~~~l~~~~-~-----------~-~~l~~~~r~LkpgG~l~i 190 (298) ++.+..+.... + . .+++.+.+.++++|.+++ T Consensus 80 li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~ 123 (275) T PRK06940 80 LVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV 123 (275) T ss_pred EEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE Confidence 88766543221 1 1 345566666666665443 No 472 >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... Probab=82.43 E-value=5.8 Score=29.79 Aligned_cols=90 Identities=20% Similarity=0.199 Sum_probs=50.5 Q ss_pred EEEeCCCC-CHH-HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC----------CCCCCCCCCCeeE Q psy2408 92 FIDIGCGF-GLS-GIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD----------ALNLPFDNDSFDG 159 (298) Q Consensus 92 vLDiGcG~-G~~-~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d----------~~~~~~~~~~fD~ 159 (298) |+=+|+|. |.+ +..|++ .+..|+.++-++ .++..++. + +.+...+ ....+...+.+|+ T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~~-~~~~~~~~----g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 70 (151) T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRSP-RLEAIKEQ----G----LTITGPDGDETVQPPIVISAPSADAGPYDL 70 (151) T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEEEEESHH-HHHHHHHH----C----EEEEETTEEEEEEEEEEESSHGHHHSTESE T ss_pred CEEECcCHHHHHHHHHHHH-CCCceEEEEccc-cHHhhhhe----e----EEEEecccceecccccccCcchhccCCCcE Confidence 44566664 433 233333 588999999887 55554333 2 2222222 0000113468999 Q ss_pred EEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 160 GWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 160 V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) |+..-- .......++.+.+.+.|+..+++..- T Consensus 71 viv~vK--a~~~~~~l~~l~~~~~~~t~iv~~qN 102 (151) T PF02558_consen 71 VIVAVK--AYQLEQALQSLKPYLDPNTTIVSLQN 102 (151) T ss_dssp EEE-SS--GGGHHHHHHHHCTGEETTEEEEEESS T ss_pred EEEEec--ccchHHHHHHHhhccCCCcEEEEEeC Confidence 976421 11222888899999999977766533 No 473 >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional Probab=82.21 E-value=7.4 Score=36.47 Aligned_cols=82 Identities=17% Similarity=0.114 Sum_probs=51.9 Q ss_pred hCCCCCCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhc-----C--CCCceEEEECCCCCCC- Q psy2408 83 KTSITKGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAE-----G--LLDKVNFLHGDALNLP- 151 (298) Q Consensus 83 ~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~-----~--~~~~i~~~~~d~~~~~- 151 (298) ......+.+||-.|+ +|.++..+++. .|.+|++++.+...++.....+... + ...++.++.+|+.+.. T Consensus 74 ~~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576) T PLN03209 74 ELDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576) T ss_pred ccccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH Confidence 444456777887774 57777777665 3789999999887665544433221 1 1135788999998742 Q ss_pred C--CCCCeeEEEeccc Q psy2408 152 F--DNDSFDGGWFFES 165 (298) Q Consensus 152 ~--~~~~fD~V~~~~~ 165 (298) + .-+..|+|+++.. T Consensus 153 I~~aLggiDiVVn~AG 168 (576) T PLN03209 153 IGPALGNASVVICCIG 168 (576) T ss_pred HHHHhcCCCEEEEccc Confidence 1 1146898887643 No 474 >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Probab=82.01 E-value=12 Score=35.68 Aligned_cols=92 Identities=17% Similarity=0.057 Sum_probs=57.6 Q ss_pred CeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----CCCCCeeEEEecc Q psy2408 90 QRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----FDNDSFDGGWFFE 164 (298) Q Consensus 90 ~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~~~ 164 (298) .+|+=+|+|. |..........+..++.+|.+++.++.+++. + ..++.+|+.+.. ..-++.|++++. T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g----~~v~~GDat~~~~L~~agi~~A~~vv~~- 471 (601) T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY----G----YKVYYGDATQLELLRAAGAEKAEAIVIT- 471 (601) T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC----C----CeEEEeeCCCHHHHHhcCCccCCEEEEE- Confidence 4677777664 4443333333578999999999988887642 2 568999998742 123467776542 Q ss_pred cccccChH---HHHHHHhhcccCCcEEEEEeCC Q psy2408 165 SIFHMNHS---AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 165 ~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~ 194 (298) .+++ ..+-...|.+.|...++..... T Consensus 472 ----~~d~~~n~~i~~~~r~~~p~~~IiaRa~~ 500 (601) T PRK03659 472 ----CNEPEDTMKIVELCQQHFPHLHILARARG 500 (601) T ss_pred ----eCCHHHHHHHHHHHHHHCCCCeEEEEeCC Confidence 2333 3333445567788887775443 No 475 >PRK06522 2-dehydropantoate 2-reductase; Reviewed Probab=82.01 E-value=15 Score=31.24 Aligned_cols=92 Identities=17% Similarity=0.135 Sum_probs=49.9 Q ss_pred eEEEeCCCC-CH-HHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCC---CceEEEECCCCCCCCCCCCeeEEEeccc Q psy2408 91 RFIDIGCGF-GL-SGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLL---DKVNFLHGDALNLPFDNDSFDGGWFFES 165 (298) Q Consensus 91 ~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 165 (298) +|+=+|+|. |. ++..|++ .|..|+.++.+++.++..++. ++. ........-..+.. +.+.+|+|+..-- T Consensus 2 ~I~IiG~G~~G~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~-~~~~~d~vila~k 75 (304) T PRK06522 2 KIAILGAGAIGGLFGAALAQ-AGHDVTLVARRGAHLDALNEN----GLRLEDGEITVPVLAADDPA-ELGPQDLVILAVK 75 (304) T ss_pred EEEEECCCHHHHHHHHHHHh-CCCeEEEEECChHHHHHHHHc----CCcccCCceeecccCCCChh-HcCCCCEEEEecc Confidence 678889886 33 3334444 578999999977666555432 321 11100000011111 1257898876433 Q ss_pred ccccChH-HHHHHHhhcccCCcEEEEE Q psy2408 166 IFHMNHS-AALNEARRVLKSGSILTLT 191 (298) Q Consensus 166 l~~~~~~-~~l~~~~r~LkpgG~l~i~ 191 (298) -. +. .+++.+...+.++..++.. T Consensus 76 ~~---~~~~~~~~l~~~l~~~~~iv~~ 99 (304) T PRK06522 76 AY---QLPAALPSLAPLLGPDTPVLFL 99 (304) T ss_pred cc---cHHHHHHHHhhhcCCCCEEEEe Confidence 21 22 7777888888777665543 No 476 >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] Probab=81.96 E-value=7.3 Score=31.84 Aligned_cols=66 Identities=24% Similarity=0.160 Sum_probs=42.0 Q ss_pred eEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----CCCCCeeEEEe Q psy2408 91 RFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----FDNDSFDGGWF 162 (298) Q Consensus 91 ~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~ 162 (298) +++=+|||. |..........|..|+.+|.+++.++.....- .....+++|..+.. ..-..+|++++ T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~------~~~~~v~gd~t~~~~L~~agi~~aD~vva 72 (225) T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADE------LDTHVVIGDATDEDVLEEAGIDDADAVVA 72 (225) T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh------cceEEEEecCCCHHHHHhcCCCcCCEEEE Confidence 577788875 43333222225789999999998777633210 12678888887741 22367888875 No 477 >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Probab=81.89 E-value=32 Score=29.44 Aligned_cols=97 Identities=18% Similarity=0.126 Sum_probs=60.6 Q ss_pred hCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----CCCCC Q psy2408 83 KTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----PFDND 155 (298) Q Consensus 83 ~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~ 155 (298) ...+.++.+||=.|+ | .|..+..+++..|.++++++.+++..+.++. .+.. .++..+-..+ ....+ T Consensus 134 ~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~~~~ 206 (329) T cd08250 134 VGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKS----LGCD---RPINYKTEDLGEVLKKEYPK 206 (329) T ss_pred hcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHH----cCCc---eEEeCCCccHHHHHHHhcCC Confidence 345678889998884 3 4777777888778899999988877666643 2321 1222111111 01124 Q ss_pred CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) .+|+|+... .. ..+..+.+.|+++|+++... T Consensus 207 ~vd~v~~~~-----g~-~~~~~~~~~l~~~g~~v~~g 237 (329) T cd08250 207 GVDVVYESV-----GG-EMFDTCVDNLALKGRLIVIG 237 (329) T ss_pred CCeEEEECC-----cH-HHHHHHHHHhccCCeEEEEe Confidence 588887422 11 46677888999999987653 No 478 >PF14740 DUF4471: Domain of unknown function (DUF4471) Probab=81.80 E-value=4.2 Score=34.47 Aligned_cols=67 Identities=18% Similarity=0.335 Sum_probs=41.2 Q ss_pred CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCc Q psy2408 154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFE 233 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 233 (298) .+.||+|+.....-|+-.| ++.++++|+|.|++-..-..-... ......+ .+.+.++++++||+ T Consensus 220 ~~~Fd~ifvs~s~vh~L~p----~l~~~~a~~A~LvvEtaKfmvdLr-KEq~~~F-----------~~kv~eLA~~aG~~ 283 (289) T PF14740_consen 220 QNFFDLIFVSCSMVHFLKP----ELFQALAPDAVLVVETAKFMVDLR-KEQLQEF-----------VKKVKELAKAAGFK 283 (289) T ss_pred cCCCCEEEEhhhhHhhcch----HHHHHhCCCCEEEEEcchhheeCC-HHHHHHH-----------HHHHHHHHHHCCCc Confidence 3679999765544433332 377788999998886543322232 1222222 23688899999998 Q ss_pred EEE Q psy2408 234 LIK 236 (298) Q Consensus 234 ~~~ 236 (298) .+. T Consensus 284 p~~ 286 (289) T PF14740_consen 284 PVT 286 (289) T ss_pred ccc Confidence 654 No 479 >cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh Probab=81.74 E-value=24 Score=29.74 Aligned_cols=93 Identities=18% Similarity=0.149 Sum_probs=59.7 Q ss_pred CCCCCCeEEEeCCC--CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEe Q psy2408 85 SITKGQRFIDIGCG--FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWF 162 (298) Q Consensus 85 ~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~ 162 (298) ...++.+||=.|++ .|..+..+++..|+++++++.+++..+.+++ .+.. ..+. +..++ ..+.+|+++- T Consensus 129 ~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~-~~~~~--~~~~~d~vl~ 198 (305) T cd08270 129 GPLLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRE----LGAA---EVVV-GGSEL--SGAPVDLVVD 198 (305) T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc---EEEe-ccccc--cCCCceEEEE Confidence 33358899998883 3666667777678999999988877777654 2322 1111 11122 2246888874 Q ss_pred cccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 163 FESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 163 ~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) .. .. ..+....+.|+++|+++.... T Consensus 199 ~~-----g~-~~~~~~~~~l~~~G~~v~~g~ 223 (305) T cd08270 199 SV-----GG-PQLARALELLAPGGTVVSVGS 223 (305) T ss_pred CC-----Cc-HHHHHHHHHhcCCCEEEEEec Confidence 31 12 356778899999999887643 No 480 >cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh Probab=81.56 E-value=25 Score=29.70 Aligned_cols=99 Identities=20% Similarity=0.263 Sum_probs=54.7 Q ss_pred CCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEe Q psy2408 85 SITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWF 162 (298) Q Consensus 85 ~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~ 162 (298) .+.++.+||-.|+ | .|..+..+++..|+++++++.+ ...+.++ ..+...-+.....+........+.+|+|+. T Consensus 140 ~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~ 214 (319) T cd08267 140 KVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELVR----SLGADEVIDYTTEDFVALTAGGEKYDVIFD 214 (319) T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHHH----HcCCCEeecCCCCCcchhccCCCCCcEEEE Confidence 3678899999997 3 4777777787778999998854 4444443 223211011111111010123456898875 Q ss_pred cccccccChH-HHHHHHhhcccCCcEEEEEeC Q psy2408 163 FESIFHMNHS-AALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 163 ~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~ 193 (298) +..- .. .....+. .++++|+++.... T Consensus 215 ~~~~----~~~~~~~~~~-~l~~~g~~i~~g~ 241 (319) T cd08267 215 AVGN----SPFSLYRASL-ALKPGGRYVSVGG 241 (319) T ss_pred CCCc----hHHHHHHhhh-ccCCCCEEEEecc Confidence 3221 12 3333333 3999999887643 No 481 >PRK06914 short chain dehydrogenase; Provisional Probab=81.54 E-value=12 Score=31.28 Aligned_cols=77 Identities=16% Similarity=0.018 Sum_probs=49.2 Q ss_pred CCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-C--------CCCC Q psy2408 89 GQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-F--------DNDS 156 (298) Q Consensus 89 ~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~--------~~~~ 156 (298) +.++|-.|+ +|.++..+++. .|++|++++-+++.++.........+...++.++.+|+.+.. . .-+. T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280) T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280) T ss_pred CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC Confidence 346787774 44555555543 378999999888766665555444444456888999987742 0 0145 Q ss_pred eeEEEecccc Q psy2408 157 FDGGWFFESI 166 (298) Q Consensus 157 fD~V~~~~~l 166 (298) .|.|+.+... T Consensus 82 id~vv~~ag~ 91 (280) T PRK06914 82 IDLLVNNAGY 91 (280) T ss_pred eeEEEECCcc Confidence 7888766443 No 482 >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional Probab=81.28 E-value=14 Score=32.80 Aligned_cols=92 Identities=15% Similarity=0.165 Sum_probs=58.1 Q ss_pred eEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCc-eEEEECCCCCCCCCCCCeeEEEeccccccc Q psy2408 91 RFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDK-VNFLHGDALNLPFDNDSFDGGWFFESIFHM 169 (298) Q Consensus 91 ~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~ 169 (298) +||-++=..|.++..++. .+.. ...| |--.-...+.++...+++.. +++. +... +++ +.+|+|+. .+ T Consensus 47 ~~~i~nd~fGal~~~l~~-~~~~-~~~d-s~~~~~~~~~n~~~n~~~~~~~~~~--~~~~-~~~-~~~d~vl~-----~~ 114 (378) T PRK15001 47 PVLILNDAFGALSCALAE-HKPY-SIGD-SYISELATRENLRLNGIDESSVKFL--DSTA-DYP-QQPGVVLI-----KV 114 (378) T ss_pred CEEEEcCchhHHHHHHHh-CCCC-eeeh-HHHHHHHHHHHHHHcCCCcccceee--cccc-ccc-CCCCEEEE-----Ee Confidence 899999999999999986 3322 1233 33333445556666666533 3333 2222 233 45898864 33 Q ss_pred ChH-----HHHHHHhhcccCCcEEEEEeCC Q psy2408 170 NHS-----AALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 170 ~~~-----~~l~~~~r~LkpgG~l~i~~~~ 194 (298) |.. ..+..+.++|.||+.+++.... T Consensus 115 PK~~~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378) T PRK15001 115 PKTLALLEQQLRALRKVVTSDTRIIAGAKA 144 (378) T ss_pred CCCHHHHHHHHHHHHhhCCCCCEEEEEEec Confidence 332 6778888999999998876554 No 483 >cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh Probab=80.83 E-value=20 Score=30.65 Aligned_cols=97 Identities=19% Similarity=0.224 Sum_probs=60.1 Q ss_pred CCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC-CCC------CCCCC Q psy2408 84 TSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA-LNL------PFDND 155 (298) Q Consensus 84 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~-~~~------~~~~~ 155 (298) ..+.++.+|+=.|+|. |..+..+++..|++++.++.++...+.+.+. +.. .++..+- ..+ -.... T Consensus 156 ~~~~~g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~~~ 228 (336) T cd08276 156 GPLKPGDTVLVQGTGGVSLFALQFAKAAGARVIATSSSDEKLERAKAL----GAD---HVINYRTTPDWGEEVLKLTGGR 228 (336) T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC---EEEcCCcccCHHHHHHHHcCCC Confidence 3566788888776653 5555566666789999999998877776542 321 1222111 111 01234 Q ss_pred CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) .+|+++.+. . ...+..+.+.|+++|+++.... T Consensus 229 ~~d~~i~~~-----~-~~~~~~~~~~l~~~G~~v~~g~ 260 (336) T cd08276 229 GVDHVVEVG-----G-PGTLAQSIKAVAPGGVISLIGF 260 (336) T ss_pred CCcEEEECC-----C-hHHHHHHHHhhcCCCEEEEEcc Confidence 688887532 1 2456678899999999887543 No 484 >cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, Probab=80.66 E-value=3.4 Score=36.05 Aligned_cols=99 Identities=15% Similarity=0.101 Sum_probs=59.5 Q ss_pred HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----C-CC Q psy2408 82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----P-FD 153 (298) Q Consensus 82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~ 153 (298) ....+.++.+||=.|+|. |..+..+++..|+ .++++|.++...+.+.+. +.. .++...-..+ . .+ T Consensus 168 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~v~~~~~~~~~~~~~~~~~ 240 (350) T cd08256 168 DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKF----GAD---VVLNPPEVDVVEKIKELTG 240 (350) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHc----CCc---EEecCCCcCHHHHHHHHhC Confidence 455667888888877654 6666677776775 578899888766655432 321 1221111110 0 12 Q ss_pred CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe Q psy2408 154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192 (298) Q Consensus 154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~ 192 (298) ...+|+|+.. ......+..+.+.++++|+++... T Consensus 241 ~~~vdvvld~-----~g~~~~~~~~~~~l~~~G~~v~~g 274 (350) T cd08256 241 GYGCDIYIEA-----TGHPSAVEQGLNMIRKLGRFVEFS 274 (350) T ss_pred CCCCCEEEEC-----CCChHHHHHHHHHhhcCCEEEEEc Confidence 2358888642 232345777889999999987753 No 485 >PRK07454 short chain dehydrogenase; Provisional Probab=80.61 E-value=17 Score=29.60 Aligned_cols=76 Identities=17% Similarity=-0.021 Sum_probs=50.4 Q ss_pred CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CC-----C Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FD-----N 154 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~ 154 (298) ...++|-.|+ +|.++..+++. .|.+|++++.++...+.........+ .++.++.+|+.+.. +. . T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241) T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241) T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHc Confidence 3457888874 66776666665 37899999998876665555444322 45788899987742 10 1 Q ss_pred CCeeEEEecccc Q psy2408 155 DSFDGGWFFESI 166 (298) Q Consensus 155 ~~fD~V~~~~~l 166 (298) +..|+++.+... T Consensus 82 ~~id~lv~~ag~ 93 (241) T PRK07454 82 GCPDVLINNAGM 93 (241) T ss_pred CCCCEEEECCCc Confidence 457998876554 No 486 >PRK06128 oxidoreductase; Provisional Probab=80.60 E-value=25 Score=29.84 Aligned_cols=101 Identities=18% Similarity=0.093 Sum_probs=58.7 Q ss_pred CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHH--HHHHHHHHHHhcCCCCceEEEECCCCCCC-----C----- Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKF--QQESAMKTAKAEGLLDKVNFLHGDALNLP-----F----- 152 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~--~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~----- 152 (298) .+.+||-.|+ +|.++..+++. .|++|+.+..+.. ..+...+.+...+ .++.++.+|+.+.. + T Consensus 54 ~~k~vlITGa-s~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300) T PRK06128 54 QGRKALITGA-DSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK 130 (300) T ss_pred CCCEEEEecC-CCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH Confidence 3568888885 55555566554 3788887765432 2333333333333 35778888987631 0 Q ss_pred CCCCeeEEEeccccccc-------Ch-------------H-HHHHHHhhcccCCcEEEEE Q psy2408 153 DNDSFDGGWFFESIFHM-------NH-------------S-AALNEARRVLKSGSILTLT 191 (298) Q Consensus 153 ~~~~fD~V~~~~~l~~~-------~~-------------~-~~l~~~~r~LkpgG~l~i~ 191 (298) .-+..|+++.+...... .. . .+++.+.+.++++|.++.. T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300) T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300) T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE Confidence 01468999876654211 10 1 3556666777788887764 No 487 >cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr Probab=80.59 E-value=4.3 Score=34.74 Aligned_cols=100 Identities=15% Similarity=0.078 Sum_probs=62.9 Q ss_pred HHhCCCCCCCeEEEeCC--CCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC----C--CC Q psy2408 81 INKTSITKGQRFIDIGC--GFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN----L--PF 152 (298) Q Consensus 81 ~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~----~--~~ 152 (298) .....+.++.+||=.|+ +.|..+..+++..|.++++++.+++..+.++. .+.. .++...-.. + .. T Consensus 135 ~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~ 207 (324) T cd08244 135 LDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRA----LGAD---VAVDYTRPDWPDQVREAL 207 (324) T ss_pred HHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCC---EEEecCCccHHHHHHHHc Confidence 44556678889998884 34677777888789999999998887766643 2321 122211111 0 01 Q ss_pred CCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 153 ~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) ....+|+|+.+. ... ....+.+.|+++|+++.... T Consensus 208 ~~~~~d~vl~~~-----g~~-~~~~~~~~l~~~g~~v~~g~ 242 (324) T cd08244 208 GGGGVTVVLDGV-----GGA-IGRAALALLAPGGRFLTYGW 242 (324) T ss_pred CCCCceEEEECC-----ChH-hHHHHHHHhccCcEEEEEec Confidence 234689987532 222 34778899999999886543 No 488 >PRK08213 gluconate 5-dehydrogenase; Provisional Probab=80.51 E-value=14 Score=30.52 Aligned_cols=76 Identities=20% Similarity=0.115 Sum_probs=52.4 Q ss_pred CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-C---------CC Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-F---------DN 154 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~---------~~ 154 (298) .+.++|=.| |+|.++..+++. .|++|+.++.+...++.....+...+ .++.++.+|+.+.. . .. T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259) T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERF 87 (259) T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh Confidence 456888888 566777777765 37899999999877776665554332 35778899988741 1 01 Q ss_pred CCeeEEEecccc Q psy2408 155 DSFDGGWFFESI 166 (298) Q Consensus 155 ~~fD~V~~~~~l 166 (298) +.+|.|+.+... T Consensus 88 ~~id~vi~~ag~ 99 (259) T PRK08213 88 GHVDILVNNAGA 99 (259) T ss_pred CCCCEEEECCCC Confidence 468988876543 No 489 >PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional Probab=80.49 E-value=6.8 Score=36.73 Aligned_cols=61 Identities=15% Similarity=0.084 Sum_probs=46.0 Q ss_pred CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc Q psy2408 87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI 166 (298) Q Consensus 87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 166 (298) .+..+|| +.||+|.-+..+++ ...++.++++|++ +++.++|+.+.+-..+.+|+|++...+ T Consensus 504 ~k~mKIL-vaCGsGiGTStmva----------------~kIkk~Lke~GI~--veV~~~~Vsev~s~~~~aDIIVtt~~L 564 (602) T PRK09548 504 GKPVRIL-AVCGQGQGSSMMMK----------------MKIKKYLDKRGIP--IIMDSCAVNDYKGKLETIDIIVCSKHL 564 (602) T ss_pred CcccEEE-EECCCCchHHHHHH----------------HHHHHHHHHcCCC--eEEEEechHhCcccCCCCCEEEEcccc Confidence 4556777 88999988877776 4567777888885 678899998876445679999886554 No 490 >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. Probab=80.45 E-value=3.2 Score=35.28 Aligned_cols=74 Identities=14% Similarity=0.008 Sum_probs=44.6 Q ss_pred CCCCHHHHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHhcCCCCceE----EEECCCCCC-----CCCCCCeeEEEec Q psy2408 97 CGFGLSGIRLAKAK----GCRVDGITISKFQQESAMKTAKAEGLLDKVN----FLHGDALNL-----PFDNDSFDGGWFF 163 (298) Q Consensus 97 cG~G~~~~~l~~~~----~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~----~~~~d~~~~-----~~~~~~fD~V~~~ 163 (298) .|+|.++..|+++. ..+++.+|.++..+-..+..+.......++. .+.+|+.+. -+....+|+|+-. T Consensus 5 Ga~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfHa 84 (293) T PF02719_consen 5 GAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFHA 84 (293) T ss_dssp TTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE- T ss_pred ccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEEC Confidence 47899999998862 3689999999999998888875332222344 457888764 2455689999988 Q ss_pred ccccccC Q psy2408 164 ESIFHMN 170 (298) Q Consensus 164 ~~l~~~~ 170 (298) .++-|++ T Consensus 85 AA~KhVp 91 (293) T PF02719_consen 85 AALKHVP 91 (293) T ss_dssp -----HH T ss_pred hhcCCCC Confidence 8888875 No 491 >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] Probab=80.34 E-value=11 Score=34.99 Aligned_cols=82 Identities=15% Similarity=0.138 Sum_probs=63.0 Q ss_pred CCCeEEEeCCCCCHHHHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CCCCCee Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKAK----GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FDNDSFD 158 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~~----~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~fD 158 (298) .|++||--| |+|.++..++++. ..+++.+|.++..+......+...-...++.++-+|+.+.. +..-+.| T Consensus 249 ~gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd 327 (588) T COG1086 249 TGKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVD 327 (588) T ss_pred CCCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCc Confidence 467888666 6788888887752 46899999999998888887776422356889999998852 4455799 Q ss_pred EEEecccccccC Q psy2408 159 GGWFFESIFHMN 170 (298) Q Consensus 159 ~V~~~~~l~~~~ 170 (298) .|+-..++-|+| T Consensus 328 ~VfHAAA~KHVP 339 (588) T COG1086 328 IVFHAAALKHVP 339 (588) T ss_pred eEEEhhhhccCc Confidence 999888888887 No 492 >PRK06124 gluconate 5-dehydrogenase; Provisional Probab=80.34 E-value=14 Score=30.32 Aligned_cols=76 Identities=20% Similarity=0.093 Sum_probs=50.4 Q ss_pred CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-C---------CC Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-F---------DN 154 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~---------~~ 154 (298) .+.+||-.|+ +|.++..+++. .|++|+.++.+++.++.....+...+ .++.++.+|+.+.. . .. T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256) T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAEH 86 (256) T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhc Confidence 4678888885 55556666554 48899999999877766655554433 35788888987631 0 11 Q ss_pred CCeeEEEecccc Q psy2408 155 DSFDGGWFFESI 166 (298) Q Consensus 155 ~~fD~V~~~~~l 166 (298) +.+|.++.+... T Consensus 87 ~~id~vi~~ag~ 98 (256) T PRK06124 87 GRLDILVNNVGA 98 (256) T ss_pred CCCCEEEECCCC Confidence 467888865443 No 493 >KOG1198|consensus Probab=80.21 E-value=3.9 Score=35.84 Aligned_cols=117 Identities=17% Similarity=0.106 Sum_probs=65.0 Q ss_pred HHHHHHHHHHHHHHhC------CCCCCCeEEEeCCCC--CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCce Q psy2408 69 FAQGSDKLSRIMINKT------SITKGQRFIDIGCGF--GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKV 140 (298) Q Consensus 69 ~~~~~~~~~~~l~~~~------~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i 140 (298) +..+.-.....+.... +.+++..||=+|.++ |..+..+++..+...+...-|.+.++.++.. |...-+ T Consensus 132 ~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~l----GAd~vv 207 (347) T KOG1198|consen 132 LPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKL----GADEVV 207 (347) T ss_pred CchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHc----CCcEee Confidence 3334444555555666 678899999998776 5667777887675555666788888877765 322112 Q ss_pred EEEECCCCCCCCC--CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC Q psy2408 141 NFLHGDALNLPFD--NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP 194 (298) Q Consensus 141 ~~~~~d~~~~~~~--~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 194 (298) ++...|+.+.... ...||+|+-+-.-. .....+...+++|+..++.... T Consensus 208 dy~~~~~~e~~kk~~~~~~DvVlD~vg~~-----~~~~~~~~l~~~g~~~~i~~~~ 258 (347) T KOG1198|consen 208 DYKDENVVELIKKYTGKGVDVVLDCVGGS-----TLTKSLSCLLKGGGGAYIGLVG 258 (347) T ss_pred cCCCHHHHHHHHhhcCCCccEEEECCCCC-----ccccchhhhccCCceEEEEecc Confidence 2222222222111 46799987433221 1222334445566655554433 No 494 >TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc. Probab=80.18 E-value=10 Score=32.45 Aligned_cols=96 Identities=17% Similarity=0.173 Sum_probs=57.8 Q ss_pred CCCCCC-eEEEeCC-CC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC-CCC-CC-CCCCCCee Q psy2408 85 SITKGQ-RFIDIGC-GF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG-DAL-NL-PFDNDSFD 158 (298) Q Consensus 85 ~~~~~~-~vLDiGc-G~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~-d~~-~~-~~~~~~fD 158 (298) .+.++. +||=.|+ |. |..+..+++..|++++.++-+++..+.+++ .+.. .++.. +.. .. ....+.+| T Consensus 141 ~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~d 213 (323) T TIGR02823 141 GLTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEEEDYLKE----LGAS---EVIDREDLSPPGKPLEKERWA 213 (323) T ss_pred CCCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHh----cCCc---EEEccccHHHHHHHhcCCCce Confidence 356787 9999997 43 777777787778888888777766555532 2321 11111 100 00 11123488 Q ss_pred EEEecccccccChHHHHHHHhhcccCCcEEEEEeC Q psy2408 159 GGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193 (298) Q Consensus 159 ~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~ 193 (298) +++-.. .. ..+..+.+.|+++|+++.... T Consensus 214 ~vld~~-----g~-~~~~~~~~~l~~~G~~v~~g~ 242 (323) T TIGR02823 214 GAVDTV-----GG-HTLANVLAQLKYGGAVAACGL 242 (323) T ss_pred EEEECc-----cH-HHHHHHHHHhCCCCEEEEEcc Confidence 775432 12 345678888999999887643 No 495 >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. Probab=80.12 E-value=4.1 Score=33.83 Aligned_cols=58 Identities=21% Similarity=0.107 Sum_probs=40.8 Q ss_pred HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh Q psy2408 75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKA 133 (298) Q Consensus 75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~ 133 (298) +++..|.+.++..+..+++|.=||+|.++..+.. .+.+++.-|+++......+..+.. T Consensus 7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~-~~~~vi~ND~~~~l~~~~~~~l~~ 64 (260) T PF02086_consen 7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQ-PGKRVIINDINPDLINFWKAVLKN 64 (260) T ss_dssp GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHHHH T ss_pred HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcc-cccceeeeechHHHHHHHHHHHhc Confidence 4567777777532678999999999999988876 577999999999888877755543 No 496 >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. Probab=80.05 E-value=4.3 Score=32.50 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=22.5 Q ss_pred CCCeEEEeCCCC-CHH-HHHHHHhcC-CeEEEEeCC Q psy2408 88 KGQRFIDIGCGF-GLS-GIRLAKAKG-CRVDGITIS 120 (298) Q Consensus 88 ~~~~vLDiGcG~-G~~-~~~l~~~~~-~~v~~vD~s 120 (298) ...+||=+|||. |.. +..|+. .| .+++.+|.+ T Consensus 20 ~~~~VlviG~GglGs~ia~~La~-~Gv~~i~lvD~d 54 (202) T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAG-AGVGTIVIVDDD 54 (202) T ss_pred cCCCEEEECCCHHHHHHHHHHHH-cCCCeEEEecCC Confidence 456999999995 544 444444 55 489999986 No 497 >PRK07063 short chain dehydrogenase; Provisional Probab=80.00 E-value=15 Score=30.38 Aligned_cols=78 Identities=17% Similarity=0.082 Sum_probs=51.9 Q ss_pred CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-C---------CC Q psy2408 88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-F---------DN 154 (298) Q Consensus 88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~---------~~ 154 (298) .+.++|-.|++ |.++..+++. .|++|+.++.+++.++.....+...+...++.++..|+.+.. . .- T Consensus 6 ~~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260) T PRK07063 6 AGKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260) T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh Confidence 35688888865 4555555554 478999999998877776666654222346788899987641 0 01 Q ss_pred CCeeEEEecccc Q psy2408 155 DSFDGGWFFESI 166 (298) Q Consensus 155 ~~fD~V~~~~~l 166 (298) +.+|.++.+... T Consensus 85 g~id~li~~ag~ 96 (260) T PRK07063 85 GPLDVLVNNAGI 96 (260) T ss_pred CCCcEEEECCCc Confidence 468988876553 No 498 >PLN02545 3-hydroxybutyryl-CoA dehydrogenase Probab=79.98 E-value=26 Score=29.80 Aligned_cols=93 Identities=14% Similarity=0.093 Sum_probs=51.1 Q ss_pred CeEEEeCCCC-C-HHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-------hcCCC---------CceEEEECCCCCCC Q psy2408 90 QRFIDIGCGF-G-LSGIRLAKAKGCRVDGITISKFQQESAMKTAK-------AEGLL---------DKVNFLHGDALNLP 151 (298) Q Consensus 90 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~-------~~~~~---------~~i~~~~~d~~~~~ 151 (298) .+|-=||+|. | .++..++. .|.+|+++|.+++.++.+++.+. ..+.- .++. ...+... T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~-- 80 (295) T PLN02545 5 KKVGVVGAGQMGSGIAQLAAA-AGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNLEE-- 80 (295) T ss_pred CEEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCHHH-- Confidence 4677888875 3 22333333 57899999999999887665432 12110 0111 1222211 Q ss_pred CCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEE Q psy2408 152 FDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILT 189 (298) Q Consensus 152 ~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~ 189 (298) . ...|+|+.+ +-+..... .++.++...++|+..++ T Consensus 81 ~--~~aD~Viea-v~e~~~~k~~v~~~l~~~~~~~~il~ 116 (295) T PLN02545 81 L--RDADFIIEA-IVESEDLKKKLFSELDRICKPSAILA 116 (295) T ss_pred h--CCCCEEEEc-CccCHHHHHHHHHHHHhhCCCCcEEE Confidence 1 346777542 11111122 77888888888876544 No 499 >cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman Probab=79.97 E-value=4.3 Score=34.67 Aligned_cols=94 Identities=17% Similarity=0.113 Sum_probs=58.0 Q ss_pred CCCCCCeEEEeCCC--CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCCCCC Q psy2408 85 SITKGQRFIDIGCG--FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFDNDS 156 (298) Q Consensus 85 ~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~~ 156 (298) .+.++.+||=.|++ .|..+..+++..|++++++..++...+.+++ .+.. .++...-... ...... T Consensus 135 ~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~~ 207 (323) T cd05282 135 KLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKA----LGAD---EVIDSSPEDLAQRVKEATGGAG 207 (323) T ss_pred cCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHHh----cCCC---EEecccchhHHHHHHHHhcCCC Confidence 45678899988873 4777777888789999998888876666643 2321 1111111010 012346 Q ss_pred eeEEEecccccccChHHHHHHHhhcccCCcEEEEE Q psy2408 157 FDGGWFFESIFHMNHSAALNEARRVLKSGSILTLT 191 (298) Q Consensus 157 fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~ 191 (298) +|+|+.+.. .. ....+.+.|+++|+++.. T Consensus 208 ~d~vl~~~g-----~~-~~~~~~~~l~~~g~~v~~ 236 (323) T cd05282 208 ARLALDAVG-----GE-SATRLARSLRPGGTLVNY 236 (323) T ss_pred ceEEEECCC-----CH-HHHHHHHhhCCCCEEEEE Confidence 898874322 22 234667899999998764 No 500 >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional Probab=79.85 E-value=33 Score=28.52 Aligned_cols=76 Identities=16% Similarity=0.016 Sum_probs=44.8 Q ss_pred CCCeEEEeCCCC-CHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----------CC Q psy2408 88 KGQRFIDIGCGF-GLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----------FD 153 (298) Q Consensus 88 ~~~~vLDiGcG~-G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 153 (298) .+.++|=.|++. +.++..+++. .|++|+.++.+....+.+.+..... +...++..|+.+.. -. T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~~ 81 (262) T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL---GSDIVLPCDVAEDASIDAMFAELGKV 81 (262) T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhcc---CCceEeecCCCCHHHHHHHHHHHHhh Confidence 456899999876 2555555544 4788988887643223333322221 23557778887631 01 Q ss_pred CCCeeEEEecccc Q psy2408 154 NDSFDGGWFFESI 166 (298) Q Consensus 154 ~~~fD~V~~~~~l 166 (298) -+.+|+++.+..+ T Consensus 82 ~g~iD~linnAg~ 94 (262) T PRK07984 82 WPKFDGFVHSIGF 94 (262) T ss_pred cCCCCEEEECCcc Confidence 2568998877654 Done!