RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2408
(298 letters)
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 208 bits (532), Expect = 9e-67
Identities = 74/274 (27%), Positives = 135/274 (49%), Gaps = 9/274 (3%)
Query: 29 NKGKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITK 88
+ V +YD + G ++H+GYW+++ + + +D+L+ MI +
Sbjct: 3 APTPEEVRQMYDDFTDPFARIW-GENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRS 61
Query: 89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL 148
G R +D+GCG G +RLA A+ RV GI+IS+ Q A A A GL ++V F + DA+
Sbjct: 62 GDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAM 121
Query: 149 NLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSILTLTD-LPLLSVSKNDNKFK 206
+LPF++ SFD W ES+ HM + AL E RVL+ G + + D + L V +
Sbjct: 122 DLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAV 181
Query: 207 EYVKKNIH-SNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYK 265
+ + + ++ Y + ++ + DI++ P L K EA + ++
Sbjct: 182 DAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDISAQARPSL-VKTAEAFENARSQVEP 240
Query: 266 SIPNPEKSIDNWLYLFKYMSK--NLGYIIVTAKK 297
+ + +D + F+ +++ GY+++ A+K
Sbjct: 241 FM--GAEGLDRMIATFRGLAEVPEAGYVLIGARK 272
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 191 bits (488), Expect = 7e-60
Identities = 47/292 (16%), Positives = 104/292 (35%), Gaps = 16/292 (5%)
Query: 18 KENKDIKENKGNKGKKTVATLYDSPEGQIG--SVLFGGHMHWGYWDESNSKDNFAQGS-- 73
+ K YD + V G +H G + E +D + S
Sbjct: 6 SNGQSQPAATSKTVKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLR 65
Query: 74 --DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTA 131
+ L+ + + + + +D+G G+G + L + G +D + I+ Q + +
Sbjct: 66 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYN 125
Query: 132 KAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSILTL 190
GL D + +G L +P +++S+D W ++ H + E RVLK ++ +
Sbjct: 126 NQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAI 185
Query: 191 TDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVP 250
TD P+ + + + + + + + Y L + G ++ ++
Sbjct: 186 TD-PMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRPDSLVHHY-S 243
Query: 251 KLTEATLTYKKEIYKSIPNPEKSIDNWL-----YLFKYMSKNLGYIIVTAKK 297
K+ + EI + N ++ + L + + +K
Sbjct: 244 KVKAELIKRSSEIASFC--SPEFQANMKRGLEHWIEGGRAGKLTWGGMLFRK 293
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 162 bits (411), Expect = 4e-48
Identities = 40/197 (20%), Positives = 73/197 (37%), Gaps = 1/197 (0%)
Query: 50 LFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA 109
G H Y + ++ + + S + +M + +D GCG G S + +
Sbjct: 80 ALGDPEHSEYEKKVIAELHRLE-SAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRR 138
Query: 110 KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM 169
G RV+G+T+S Q + + A+ + D V + L+ PFD + W ES ++
Sbjct: 139 FGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMYV 198
Query: 170 NHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNK 229
+ +E R LK G +K+ + + N Y +
Sbjct: 199 DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMAD 258
Query: 230 SGFELIKIDDITSHVMP 246
+ I D+T +P
Sbjct: 259 NRLVPHTIVDLTPDTLP 275
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 151 bits (384), Expect = 1e-44
Identities = 53/281 (18%), Positives = 97/281 (34%), Gaps = 25/281 (8%)
Query: 23 IKENKGNKGKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMIN 82
I+ +K D + ++ G + + + +++
Sbjct: 4 IENLNSDKTFLENNQYTDEGVKVYEFIFGENYISSGGLEAT--------------KKILS 49
Query: 83 KTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNF 142
+ + + +DIG G G + + + G GI I A + +K+ F
Sbjct: 50 DIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERV---SGNNKIIF 106
Query: 143 LHGDALNLPFDNDSFDGGWFFESIFHM---NHSAALNEARRVLKSGSILTLTDLPLLSVS 199
D L F ++FD + ++I + N + + + LK L +TD
Sbjct: 107 EANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKE 166
Query: 200 KNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTY 259
D++FKEYVK+ I VE Y D+L F+ + D++ + LL +
Sbjct: 167 NWDDEFKEYVKQRK-YTLITVEEYADILTACNFKNVVSKDLSDYWNQLL-EVEHKYLHEN 224
Query: 260 KKEIYKSIPNP--EKSIDNWLYLFKYMSK-NLGYIIVTAKK 297
K+E K D W K + + A K
Sbjct: 225 KEEFLKLFSEKKFISLDDGWSRKIKDSKRKMQRWGYFKATK 265
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 141 bits (356), Expect = 1e-40
Identities = 43/230 (18%), Positives = 86/230 (37%), Gaps = 6/230 (2%)
Query: 72 GSDKLSRIMINK-TSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKT 130
GS + +R ++ +T + DIGCG G + LA ++ GI + E +
Sbjct: 29 GSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNEN 88
Query: 131 AKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTL 190
A D+V + G NLPF N+ D W +I+++ +NE + LK G + +
Sbjct: 89 AVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAV 148
Query: 191 TDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPL-LV 249
++ + + + + + ++ D + ++G+ + +
Sbjct: 149 SEASWFTSERPAEIEDFW--MDAYPEISVIPTCIDKMERAGYTPTAHFILPENCWTEHYF 206
Query: 250 PKLTEATLTYKKEIYKSIPNPE--KSIDNWLYLFKYMSKNLGYIIVTAKK 297
E T+ KE + + K L+ GY+ +K
Sbjct: 207 APQDEVRETFMKEHAGNKTAMDFMKGQQYERSLYSKYKDYYGYVFYIGQK 256
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 137 bits (346), Expect = 4e-39
Identities = 48/246 (19%), Positives = 93/246 (37%), Gaps = 10/246 (4%)
Query: 59 YWDESNSKDNFAQGSDKLSRIMINK-TSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGI 117
D ++ + GS +++ ++ ++T+ DIGCG G + LA +V G+
Sbjct: 16 ICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGL 75
Query: 118 TISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNE 177
+ + A+ GL ++V + G +LPF N+ D W +I+++ LNE
Sbjct: 76 DFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFERGLNE 135
Query: 178 ARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKI 237
R+ LK G L +++ + + + + + + + ++K+G+ +
Sbjct: 136 WRKYLKKGGYLAVSECSWFTDERPAEINDFW--MDAYPEIDTIPNQVAKIHKAGYLPVAT 193
Query: 238 DDI-----TSHVMPLLVPKLTEATLTYKKEIYKSIPNPEKSIDNWLYLFKYMSKNLGYII 292
+ T H V Y K L+ + GY
Sbjct: 194 FILPENCWTDHYFTPKVAAQKIFLTKYAGN--KIAEEFSMLQSIEEELYHKYKEYYGYTF 251
Query: 293 VTAKKI 298
AKKI
Sbjct: 252 FIAKKI 257
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 127 bits (320), Expect = 2e-35
Identities = 47/231 (20%), Positives = 94/231 (40%), Gaps = 30/231 (12%)
Query: 59 YWDESNSKDNFAQGSDKLSRIMINKT-------SITKGQRFIDIGCGFGLSGIRLAKAKG 111
WD S + + Q S ++ T + K +D+GCG G +L++ G
Sbjct: 19 KWDSSA--EFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRT-G 75
Query: 112 CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-N 170
+ G+ IS E ++ K G ++F+ GD +LPF+N+ F+ S+
Sbjct: 76 YKAVGVDIS----EVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEE 131
Query: 171 HSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKS 230
ALNE +RVLKS + L + +N + K++ N ++ + L+ +
Sbjct: 132 PLRALNEIKRVLKSDGYACIAILGPTA-KPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQ 190
Query: 231 GFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPNPEKSIDNWLYLF 281
GF+++ + + +++ + + +L++F
Sbjct: 191 GFKVVDGIGVYKRGVN--------------EKMLGQLSTDLQQSLTFLWVF 227
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 122 bits (307), Expect = 8e-34
Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 14/195 (7%)
Query: 58 GYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGI 117
DE + K FA ++ +IN+ IT G IDIG G G I LAK + +
Sbjct: 15 KNMDEIS-KTLFAPIYPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRAL 72
Query: 118 TISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALN 176
SK E A+K L D++ + GD N+P +++ D S+F + + A
Sbjct: 73 DFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFR 132
Query: 177 EARRVLKSGSILTLTDLPLLS---------VSKNDNKFKEYVKKNIHSNFILVEHYPDLL 227
E R+LKSG + + + + +KE+ +KNI VE + ++L
Sbjct: 133 EIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNIS--QENVERFQNVL 190
Query: 228 NKSGFELIKIDDITS 242
++ G +I
Sbjct: 191 DEIGISSYEIILGDE 205
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 122 bits (307), Expect = 3e-33
Identities = 46/204 (22%), Positives = 89/204 (43%), Gaps = 14/204 (6%)
Query: 51 FGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA- 109
++H GY + + ++ ++ L +++ + T G + ++ GCG G + LAK
Sbjct: 3 LTEYVH-GYSEREALR--LSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNN 59
Query: 110 KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM 169
+ I IS E A + + G+ V FL + +LPF++ SFD + + H+
Sbjct: 60 PDAEITSIDISPESLEKARENTEKNGI-KNVKFLQANIFSLPFEDSSFDHIFVCFVLEHL 118
Query: 170 NH-SAALNEARRVLKSGSILTLTD--------LPLLSVSKNDNKFKEYVKKNIHSNFILV 220
AL ++VLK G +T+ + P + V+ + N ++
Sbjct: 119 QSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVG 178
Query: 221 EHYPDLLNKSGFELIKIDDITSHV 244
LL +SGFE I+++ ++
Sbjct: 179 RQIYPLLQESGFEKIRVEPRMVYI 202
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 116 bits (293), Expect = 6e-32
Identities = 37/164 (22%), Positives = 65/164 (39%), Gaps = 10/164 (6%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG 145
+ +D G G L + + G + GI IS Q + A ++ K+N G
Sbjct: 21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF--KLNISKG 78
Query: 146 DALNLPFDNDSFDGGWFFESIFHM---NHSAALNEARRVLKSGSILTLTDLPLLSVS-KN 201
D LPF ++S + + +IFHM + A++E +RVLK G + + L
Sbjct: 79 DIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNK 138
Query: 202 DNKFKEYVKKNIHSNFILVEHYPDL--LNK--SGFELIKIDDIT 241
K E + ++ Y L +K +++ +D
Sbjct: 139 GEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKEDRV 182
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 117 bits (296), Expect = 8e-32
Identities = 28/176 (15%), Positives = 67/176 (38%), Gaps = 3/176 (1%)
Query: 70 AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMK 129
+++ + + G R +D+G G G A+ G GI +S A +
Sbjct: 18 NPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKR 77
Query: 130 TAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSIL 188
A+ G+ ++V+F+H DA + + D + + + A + LK G I+
Sbjct: 78 RAEELGVSERVHFIHNDAAGYVAN-EKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIM 136
Query: 189 TLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHV 244
+ + + + + + S+F+ + + G++++++
Sbjct: 137 LIGEPYWRQLPATEEIAQAC-GVSSTSDFLTLPGLVGAFDDLGYDVVEMVLADQEG 191
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 111 bits (278), Expect = 7e-29
Identities = 25/186 (13%), Positives = 58/186 (31%), Gaps = 23/186 (12%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFL 143
+ G + CG+ + L + G ++ GI + A + A L ++
Sbjct: 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLH 175
Query: 144 HGDALNLPFDNDSFDGGWFFESIFHM----NHSAALNEARRVLKSGSILTLTDLPLLSVS 199
DA L + +D + + + LK G L + L
Sbjct: 176 RQDAWKLDTR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPAL 234
Query: 200 KNDNKFKEY--------VKKNIHS--------NFILVEHYPDLLNKSGFELIKIDDITSH 243
D+ + +++ + + L ++GF ++ +D +
Sbjct: 235 SPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDDRAR 294
Query: 244 VMPLLV 249
+ P ++
Sbjct: 295 LFPTVI 300
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 100 bits (251), Expect = 1e-25
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 10/167 (5%)
Query: 60 WDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITI 119
+ + NS++ ++ + L +++ + K + +D+ CG G L G V G+ I
Sbjct: 13 YTDINSQEYRSRI-ETLEPLLMKY--MKKRGKVLDLACGVGGFSFLLED-YGFEVVGVDI 68
Query: 120 SKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM---NHSAALN 176
S+ A + AK+ V F+ GDA L F++ +FD F +SI H +
Sbjct: 69 SEDMIRKAREYAKSRES--NVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFK 126
Query: 177 EARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHY 223
E RRVLK + L + K V + + ++ +
Sbjct: 127 EVRRVLKPSGKFIMYFTDLRELLPR-LKESLVVGQKYWISKVIPDQE 172
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 101 bits (252), Expect = 1e-25
Identities = 38/172 (22%), Positives = 61/172 (35%), Gaps = 7/172 (4%)
Query: 70 AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMK 129
+MI R +DIG G G + + + G+ +K E A
Sbjct: 5 HHHHSL--GLMIKTAECRAEHRVLDIGAGAGHTALAFSP-YVQECIGVDATKEMVEVASS 61
Query: 130 TAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH-SAALNEARRVLKSGSIL 188
A+ +G+ + V F G A +LPF +DSFD + H + A+ E RVLK
Sbjct: 62 FAQEKGV-ENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRF 120
Query: 189 TLTDL--PLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKID 238
L D P V ++ H + + + + + I
Sbjct: 121 LLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQ 172
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 92.5 bits (230), Expect = 1e-22
Identities = 48/222 (21%), Positives = 78/222 (35%), Gaps = 41/222 (18%)
Query: 55 MHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRV 114
M YW++ + K S L I+ N + + +DIGCG G + LA KG V
Sbjct: 1 MPESYWEKVSGK--NIPSSLDLYPIIHN--YLQEDDEILDIGCGSGKISLELAS-KGYSV 55
Query: 115 DGITISKFQQESAMKTAKAEGL----LDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMN 170
GI I+ A A++ GL K F +A +L F + SFD + +
Sbjct: 56 TGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVP 115
Query: 171 H----SAALNEARRVLKSGSILTLTDLPLLSVSKNDN----------------KFKEYVK 210
S + E RVLK G+ L L + +N + + ++
Sbjct: 116 DPKERSRIIKEVFRVLKPGAYLYLVEF-----GQNWHLKLYRKRYLHDFPITKEEGSFLA 170
Query: 211 KNIHS-------NFILVEHYPDLLNKSGFELIKIDDITSHVM 245
++ + + + LL FE+
Sbjct: 171 RDPETGETEFIAHHFTEKELVFLLTDCRFEIDYFRVKELETR 212
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 89.1 bits (221), Expect = 1e-21
Identities = 30/179 (16%), Positives = 59/179 (32%), Gaps = 20/179 (11%)
Query: 60 WDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITI 119
+ A+ D R++I + +D+G G G LA G +++G+
Sbjct: 16 AEALLGTVISAEDPD---RVLIEPWATGVDGVILDVGSGTGRWTGHLASL-GHQIEGLEP 71
Query: 120 SKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AALN 176
+ + + A V F HG +L + G + S+ HM AL
Sbjct: 72 A-----TRL-VELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALV 125
Query: 177 EARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELI 235
R ++ G L ++ + + + + L +GF++
Sbjct: 126 ALRMAVEDGGGLLMSF-------FSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVT 177
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 91.2 bits (226), Expect = 1e-21
Identities = 38/213 (17%), Positives = 70/213 (32%), Gaps = 27/213 (12%)
Query: 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAK--AKGCRVDGITISKFQQESAMKTA 131
D +S ++ ITK +D GCG+G G+ L +G + GI + A +
Sbjct: 8 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELF 67
Query: 132 KAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSILTL 190
+ FL GDA + + D +D + HM L + +K G +
Sbjct: 68 RLLPY--DSEFLEGDATEIELN-DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIIC 124
Query: 191 TD----------------LPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFEL 234
+ K E + + + P L++ G +
Sbjct: 125 FEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVK- 183
Query: 235 IKIDDITSHVMPLLVPKLTEATLTYKKEIYKSI 267
+I V + + K ++Y+S+
Sbjct: 184 ----NIECRVSDKVNFLDSNMHHNDKNDLYQSL 212
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 89.6 bits (222), Expect = 3e-21
Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 11/130 (8%)
Query: 60 WDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITI 119
+D + + + + F+++G G G + L A+G R +
Sbjct: 12 YDRLRA-HPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLI-ARGYRYIALDA 69
Query: 120 SKFQQESAM-KTA--KAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAAL 175
+AM + K G+ KV + DA +P ++S G + + L
Sbjct: 70 D-----AAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVL 124
Query: 176 NEARRVLKSG 185
EA RVLK G
Sbjct: 125 AEAIRVLKPG 134
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 88.3 bits (219), Expect = 4e-21
Identities = 46/171 (26%), Positives = 70/171 (40%), Gaps = 15/171 (8%)
Query: 69 FAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAM 128
F + + R ++IG G G R A ++ G+ S E
Sbjct: 28 FLVHRFAYLSELQAVKCLLPEGRGVEIGVGTG----RFAVPLKIKI-GVEPS----ERMA 78
Query: 129 KTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH-SAALNEARRVLKSGSI 187
+ A+ G V L G A NLP ++SFD +I ++ AL EA R+LK G
Sbjct: 79 EIARKRG----VFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGY 134
Query: 188 LTLTDLPLLS-VSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKI 237
L + + S + + K KE ++ F E DL+ K+GFE K+
Sbjct: 135 LIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV 185
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 87.5 bits (217), Expect = 4e-21
Identities = 25/134 (18%), Positives = 44/134 (32%), Gaps = 12/134 (8%)
Query: 56 HWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVD 115
H + + ++ A G+D + +G + +D GCG G G L+K G V
Sbjct: 15 HSENYAQ-RWRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQ-GHDVL 72
Query: 116 GITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM----NH 171
G + + A+ + ++ GD FD ++
Sbjct: 73 GTDLD-----PIL-IDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGR 126
Query: 172 SAALNEARRVLKSG 185
AL R L +
Sbjct: 127 EPALANIHRALGAD 140
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 88.3 bits (219), Expect = 9e-21
Identities = 33/182 (18%), Positives = 69/182 (37%), Gaps = 8/182 (4%)
Query: 80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDK 139
++ ++ + +D+ G G A +V +++ + A + G +
Sbjct: 29 LMQIAALKGNEEVLDVATGGGHVANAFAP-FVKKVVAFDLTEDILKVARAFIEGNGH-QQ 86
Query: 140 VNFLHGDALNLPFDNDSFDGGWFFESIFHMNH-SAALNEARRVLKSGSILTLTDLPLLSV 198
V ++ GDA +PF ++ F + H + ++ ++EA RVLK G L L D
Sbjct: 87 VEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPEN 146
Query: 199 SKNDNKFKEYVKKNIHS--NFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEAT 256
D + K+ +S + +L ++GFEL + + + +
Sbjct: 147 DAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEE---LHCFHKTFIFEDWCDRM 203
Query: 257 LT 258
Sbjct: 204 NV 205
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 86.5 bits (214), Expect = 2e-20
Identities = 31/199 (15%), Positives = 62/199 (31%), Gaps = 28/199 (14%)
Query: 60 WDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITI 119
+D + + L R+ + +++ G G L+ RV +
Sbjct: 22 YDATFVPYMDSAAPAALERLR----AGNIRGDVLELASGTGYWTRHLS-GLADRVTALDG 76
Query: 120 SKFQQESAM-KTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AAL 175
S + M A GL D V F D + D +D +F + H+ A
Sbjct: 77 S-----AEMIAEAGRHGL-DNVEFRQQDLFDWTPDR-QWDAVFFAHWLAHVPDDRFEAFW 129
Query: 176 NEARRVLKSGSILTLTDL-----PLLSVSKNDNKFKEYVKKNIHSNFILVEHYPD----- 225
R + G ++ D+ L ++ + +F +V+ +
Sbjct: 130 ESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELT 189
Query: 226 -LLNKSGFELIKIDDITSH 243
L G+ +D++
Sbjct: 190 ERLTALGWS-CSVDEVHPG 207
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 86.4 bits (214), Expect = 2e-20
Identities = 30/190 (15%), Positives = 69/190 (36%), Gaps = 17/190 (8%)
Query: 60 WDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITI 119
W ++ + ++ + +R +D+GCG G LA +G G+
Sbjct: 24 WIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALA-DRGIEAVGVDG 82
Query: 120 SKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEAR 179
+ ++A A G + ++ +P +D ++ H + L+ R
Sbjct: 83 DRTLVDAAR--AAGAGEVHLASYAQLAEAKVPVG-KDYDLICANFALLHQDIIELLSAMR 139
Query: 180 RVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFIL-----------VEHYPDLLN 228
+L G L + L SV+ D +++ ++ + F + + + L+
Sbjct: 140 TLLVPGGALVIQTLHPWSVA--DGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALD 197
Query: 229 KSGFELIKID 238
+G L+ +
Sbjct: 198 MAGLRLVSLQ 207
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 85.1 bits (210), Expect = 1e-19
Identities = 37/237 (15%), Positives = 63/237 (26%), Gaps = 30/237 (12%)
Query: 23 IKENKGNKGKKTVATLYDSPEG----QIGSVLFGGHMHW-----GYWDESNSKDN----- 68
N G+ T Y S + ++ L+ W YW + +
Sbjct: 11 SSRNLPISGRDTNGKTYRSTDEMWKAELTGDLYDPEKGWYGKALEYWRTVPATVSGVLGG 70
Query: 69 FAQGSD---KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQE 125
D + SR I R +D G G G L D + K E
Sbjct: 71 MDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLE 130
Query: 126 SAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH---SAALNEARRVL 182
A + + F+ +++D + ++ ++ L
Sbjct: 131 EAKRELAGMPV---GKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQAL 187
Query: 183 KSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDD 239
+ + S KE S HY L N+SG ++K
Sbjct: 188 TPNGYIFFKE--NCSTGDRFLVDKED-----SSLTRSDIHYKRLFNESGVRVVKEAF 237
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 83.6 bits (206), Expect = 4e-19
Identities = 34/198 (17%), Positives = 64/198 (32%), Gaps = 25/198 (12%)
Query: 58 GYWDE-SNSKDNFAQGSDKLSRIMI------------NKTSITKGQRFIDIGCGFGLSGI 104
YW + + D G +S I I + T +D G G G
Sbjct: 36 TYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITK 95
Query: 105 RLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFE 164
RL VD + I++ A EG N+ + + DS+D W
Sbjct: 96 RLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQW 154
Query: 165 SIFHMNH---SAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVE 221
I H+ + L + L+ I+ + D ++++ + S ++
Sbjct: 155 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKD----NMAQEGVILDDVD----SSVCRDLD 206
Query: 222 HYPDLLNKSGFELIKIDD 239
++ +G L+ +
Sbjct: 207 VVRRIICSAGLSLLAEER 224
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 83.8 bits (207), Expect = 4e-19
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDK 139
+IN ++ KG DIG G G + LA +G V + S M +A
Sbjct: 26 IINLLNLPKGSVIADIGAGTGGYSVALA-NQGLFVYAVEPS-----IVM-RQQAVVHPQ- 77
Query: 140 VNFLHGDALNLPFDNDSFDGGWFFESIFHMNH-SAALNEARRVLKSGSILTLT 191
V + G A NL + S DG +I H +H + E +R+++ G+I+ LT
Sbjct: 78 VEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIRDGTIVLLT 130
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 83.3 bits (206), Expect = 4e-19
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 5/107 (4%)
Query: 88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA 147
G R +D+GCGFG + V G+ +S E + A+A G + + D
Sbjct: 43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLS----EKMLARARAAGPDTGITYERADL 98
Query: 148 LNLPFDNDSFDGGWFFESIFHMNH-SAALNEARRVLKSGSILTLTDL 193
L DSFD + ++ ++ + + L G +
Sbjct: 99 DKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTE 145
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 82.6 bits (204), Expect = 5e-19
Identities = 29/191 (15%), Positives = 56/191 (29%), Gaps = 19/191 (9%)
Query: 59 YWDESN-SKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGI 117
+D +D + ++ ++ G G G +L G V GI
Sbjct: 15 TYDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLL-AGRTVYGI 73
Query: 118 TISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH---SAA 174
S AK E L + + GD L+ S D + H+ + A
Sbjct: 74 EPS----REMRMIAK-EKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLTDDEKNVA 127
Query: 175 LNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSN--------FILVEHYPDL 226
+ + ++L G + D D + ++ H + + +
Sbjct: 128 IAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTI 187
Query: 227 LNKSGFELIKI 237
+GF +
Sbjct: 188 FENNGFHVTFT 198
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 81.0 bits (200), Expect = 2e-18
Identities = 31/139 (22%), Positives = 50/139 (35%), Gaps = 12/139 (8%)
Query: 60 WDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITI 119
++ K + G+ +++G G G RL + G+
Sbjct: 10 YEAWY--GTPLGAYVIAEEERALKGLLPPGESLLEVGAGTGYWLRRLPYP---QKVGVEP 64
Query: 120 SKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH-SAALNEA 178
S+ AM A + ++ LPF +SFD F ++ + L EA
Sbjct: 65 SE-----AM-LAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEA 118
Query: 179 RRVLKSGSILTLTDLPLLS 197
RRVL+ G L + L LS
Sbjct: 119 RRVLRPGGALVVGVLEALS 137
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 81.1 bits (200), Expect = 3e-18
Identities = 28/175 (16%), Positives = 62/175 (35%), Gaps = 30/175 (17%)
Query: 88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAM-KTAKAEGLLDKVNFLHGD 146
+ +D+GCGFG I A+ +V GI +S M AK + V +
Sbjct: 44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLS-----ERMLTEAKRKTTSPVVCYEQKA 98
Query: 147 ALNLPFDNDSFDGGWFFESIFHMNH-SAALNEARRVLKSGSILTLTDL-PLLSVSKNDNK 204
++ + D+++ ++ ++ + LKS + P+ + +
Sbjct: 99 IEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDW 158
Query: 205 FKE------------YVKKNIHSNFILVEHYP----------DLLNKSGFELIKI 237
+ + Y +++ ++ L E L K+GF++ +
Sbjct: 159 YTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSV 213
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 78.0 bits (192), Expect = 4e-17
Identities = 42/242 (17%), Positives = 82/242 (33%), Gaps = 48/242 (19%)
Query: 35 VATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFID 94
+A YD W + + + + R +D
Sbjct: 24 IARAYD---------SMYETPKWKLYHR------------LIGSFLEEY--LKNPCRVLD 60
Query: 95 IGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN 154
+G G G + L + +G V + S + ++ A+ +G N + A +LPF +
Sbjct: 61 LGGGTGKWSLFLQE-RGFEVVLVDPS----KEMLEVAREKG---VKNVVEAKAEDLPFPS 112
Query: 155 DSFDGGW-FFESIFHMNH-SAALNEARRVLKSGSIL---------TLTDLPLLSVSKNDN 203
+F+ + + ++ + A +E RRVL +L L +
Sbjct: 113 GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQIT 172
Query: 204 KFKEYVKKNIHSNFILVEHYP----DLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTY 259
+F + ++ + Y DL + GFE + I I VM +++E T
Sbjct: 173 RFLKTQTTSVGTTLFSFNSYAFKPEDLDSLEGFETVDIRGIG--VMEYPDERISEREETI 230
Query: 260 KK 261
+
Sbjct: 231 FR 232
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 75.5 bits (186), Expect = 7e-17
Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 11/114 (9%)
Query: 80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDK 139
+ K +D GCG G L + ++ I I+ A+K K K
Sbjct: 9 YLPNIFEGKKGVIVDYGCGNGFYCKYLLE-FATKLYCIDIN----VIALKEVKE-----K 58
Query: 140 VNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSILTLTD 192
+ + + ++S D F S M + ++E +R+LK + + D
Sbjct: 59 FDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIID 112
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 76.0 bits (187), Expect = 1e-16
Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 8/135 (5%)
Query: 59 YWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGIT 118
DE+ D + + ++ + K + +D+GCG G + + LA G VD
Sbjct: 5 IRDENYFTDKYELT--RTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAA-NGYDVDAWD 61
Query: 119 ISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AAL 175
+ + + E LD ++ D NL FD +D + + +
Sbjct: 62 KNAMSIANVERIKSIEN-LDNLHTRVVDLNNLTFDR-QYDFILSTVVLMFLEAKTIPGLI 119
Query: 176 NEARRVLKSGSILTL 190
+R K G +
Sbjct: 120 ANMQRCTKPGGYNLI 134
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 75.9 bits (187), Expect = 3e-16
Identities = 36/203 (17%), Positives = 69/203 (33%), Gaps = 27/203 (13%)
Query: 59 YWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGIT 118
+WD + + + ++ + G+ +D+GCG G ++A++ G V G
Sbjct: 29 FWD-ATLYQDKHSFVWQYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQS-GAEVLGTD 86
Query: 119 ISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNE 177
+ + M KA ++F DA N D D + + + AA+
Sbjct: 87 NA-----ATM-IEKARQNYPHLHFDVADARNFRVDK-PLDAVFSNAMLHWVKEPEAAIAS 139
Query: 178 ARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHS------------NFILVEHYPD 225
+ LKSG N E + + + F + Y +
Sbjct: 140 IHQALKSGGRFVAEFGG----KGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVN 195
Query: 226 LLNKSGFELIKIDDITSHVMPLL 248
+L K GF++ + + L
Sbjct: 196 ILEKQGFDVTYA-ALFNRPTTLA 217
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 76.4 bits (187), Expect = 3e-16
Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 6/117 (5%)
Query: 75 KLSRIMINKTSITKGQRFIDIGCG-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKA 133
+L + +G+R + IG G L+GI L+ G RV+ + I E + K +
Sbjct: 109 ELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEG 168
Query: 134 EGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTL 190
G +D VN + GD + D FD + R + + + +
Sbjct: 169 LG-VDGVNVITGDETVI--DGLEFDV--LMVAALAEPKRRVFRNIHRYVDTETRIIY 220
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 75.1 bits (184), Expect = 5e-16
Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 13/113 (11%)
Query: 89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL 148
ID CG G L++ RV G+ +S +SA++ A E +++ D L
Sbjct: 57 ELPLIDFACGNGTQTKFLSQF-FPRVIGLDVS----KSALEIAAKENTAANISYRLLDGL 111
Query: 149 NL----PFDNDSFDGGWFFESIFH----MNHSAALNEARRVLKSGSILTLTDL 193
++ D + + FH R +L + L +L
Sbjct: 112 VPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIEL 164
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1;
mixed alpha beta fold, structural genomics, PSI; HET:
SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP:
c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 74.9 bits (185), Expect = 8e-16
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 70 AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMK 129
AQ K+ + K + G +D+GCG+G + +R + V G+T+SK Q +
Sbjct: 48 AQ-IAKIDLA-LGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQ 105
Query: 130 TAKAEGLLDKVNFLHGD--ALNLPFD 153
L L + P D
Sbjct: 106 LVANSENLRSKRVLLAGWEQFDEPVD 131
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 73.6 bits (181), Expect = 9e-16
Identities = 27/164 (16%), Positives = 61/164 (37%), Gaps = 14/164 (8%)
Query: 80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC--RVDGITISKFQQESAMKTAKAEGLL 137
++ + + +G +D+G G G L+K G +V I + + A + GL
Sbjct: 29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL- 87
Query: 138 DKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH-SAALNEARRVLKSGSILTLTDLPLL 196
V L + +P +++ D + + ++ L E +RV K + L + D
Sbjct: 88 KNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIID---- 143
Query: 197 SVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDI 240
K + ++ +L +G + ++ ++
Sbjct: 144 -WKKEERDKGPPPEE-----VYSEWEVGLILEDAGIRVGRVVEV 181
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 73.4 bits (180), Expect = 1e-15
Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 5/130 (3%)
Query: 60 WDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITI 119
WDE S+ + G + + +++ + + + + G G + LA G V +
Sbjct: 2 WDERFSQSEYVYG-TEPNDFLVSVANQIPQGKILCLAEGEGRNACFLAS-LGYEVTAVDQ 59
Query: 120 SKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDG-GWFFESIFHMNHSAALNEA 178
S A + A+ +G+ K+ + + + D+++G F + +
Sbjct: 60 SSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKV 117
Query: 179 RRVLKSGSIL 188
+ LK G +
Sbjct: 118 YQGLKPGGVF 127
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 74.7 bits (183), Expect = 1e-15
Identities = 27/215 (12%), Positives = 61/215 (28%), Gaps = 35/215 (16%)
Query: 51 FGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK 110
G + + A + + G++ ++IGCG G LA
Sbjct: 15 LGPTANARTIQRRQTAHRLA---------IAEAWQVKPGEKILEIGCGQGDLSAVLADQV 65
Query: 111 G--CRVDGITISKFQQESAMKTAKA------EGLLDKVNFLHGDALN---LPFDNDSFDG 159
G V GI I+ + + +A L D++ L+ P + FD
Sbjct: 66 GSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDR 125
Query: 160 GWFFESIFHMNHSA-ALNEARRVLKSGSILTLTD----------LPLLSVSKNDNKFKEY 208
S+++ + + + + + + + L +
Sbjct: 126 VVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAI 185
Query: 209 VKK---NIHSNFILVEHYPDLLNKSGFELIKIDDI 240
NI + I + + + + + +
Sbjct: 186 APSDVANIRT-LITPDTLAQIAHDNTWTYTAGTIV 219
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 74.6 bits (184), Expect = 1e-15
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 70 AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMK 129
AQ K+ ++K + G +DIGCG+G + R + V G+T+SK Q +
Sbjct: 74 AQ-YAKVDLN-LDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQ 131
Query: 130 TAKAEGLLDKVNFLHGD--ALNLPFD 153
+ L P D
Sbjct: 132 VLASIDTNRSRQVLLQGWEDFAEPVD 157
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 74.2 bits (183), Expect = 2e-15
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 4/86 (4%)
Query: 70 AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMK 129
AQ K ++K ++ G +DIGCG+G + V G+T+S+ Q
Sbjct: 56 AQ-YAKRKLA-LDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKA 113
Query: 130 TAKAEGLLDKVNFLHGD--ALNLPFD 153
+ + P D
Sbjct: 114 MFDEVDSPRRKEVRIQGWEEFDEPVD 139
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 74.7 bits (183), Expect = 2e-15
Identities = 33/175 (18%), Positives = 57/175 (32%), Gaps = 16/175 (9%)
Query: 81 INKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQ-------QESAMKTA 131
+ +G +D+GCG G +K G +V G+ + Q E +
Sbjct: 76 LPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKF 135
Query: 132 KAEGLLDKVNFLHGDALNL------PFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKS 184
V FL G NL + S D N A E RVL+
Sbjct: 136 FGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRD 195
Query: 185 GSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDD 239
G L +D+ + + + +E + L+ ++GF +++
Sbjct: 196 GGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDVRLVS 250
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 72.9 bits (179), Expect = 3e-15
Identities = 32/187 (17%), Positives = 59/187 (31%), Gaps = 14/187 (7%)
Query: 60 WDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGIT 118
+DE K D + + T+ +D+G G GL L + +
Sbjct: 17 YDEQRRKFIPCF-DDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVD 75
Query: 119 ISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDG---GWFFESIFHMNHSAAL 175
+S+ E A + KV ++ D F+ +D + +
Sbjct: 76 MSEKMLEIAKNRFRGN---LKVKYIEADYSKYDFEE-KYDMVVSALSIHHLEDEDKKELY 131
Query: 176 NEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELI 235
+ +LK I DL + F E + K I ++ + +G+E
Sbjct: 132 KRSYSILKESGIFINADL-----VHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERS 186
Query: 236 KIDDITS 242
K+D
Sbjct: 187 KLDKDIE 193
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 72.5 bits (178), Expect = 4e-15
Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 14/134 (10%)
Query: 59 YWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGIT 118
+DE + + + + G+R DIGCG G + + LA V G+
Sbjct: 10 VYDELMQDVPYPEWVAWVLEQ------VEPGKRIADIGCGTGTATLLLAD--HYEVTGVD 61
Query: 119 ISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM----NHSAA 174
+S+ E A + A V+F D L +S+ ++ +
Sbjct: 62 LSEEMLEIAQEKAMETNR--HVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQT 119
Query: 175 LNEARRVLKSGSIL 188
+ A R+L G L
Sbjct: 120 FDSAARLLTDGGKL 133
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 70.4 bits (172), Expect = 2e-14
Identities = 35/220 (15%), Positives = 73/220 (33%), Gaps = 39/220 (17%)
Query: 42 PEGQIGSVLFGGHMHWGYWDE--SNSKDNFAQG--SDKLSRIMINKTSITKGQRFIDIGC 97
P + + + G W++ + QG + + + ++ +S+ G R + GC
Sbjct: 18 PTPEEVATFLHKTVEEGGWEKCWEEEITPWDQGRATPLIVHL-VDTSSLPLG-RALVPGC 75
Query: 98 GFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSF 157
G G + +A + V G+ IS+ A +T + + +F+ D + F
Sbjct: 76 GGGHDVVAMA-SPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT-ELF 133
Query: 158 DGGW---FFESIFHMNHSAALNEARRVLKSGSILTLTDLPL--------LSVSKNDNKFK 206
D + FF +I A +LK L P+ V
Sbjct: 134 DLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDV------ 187
Query: 207 EYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMP 246
+ ++L GF+ + +++ +
Sbjct: 188 --------------STFEEVLVPIGFKAVSVEENPHAIPT 213
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 71.2 bits (174), Expect = 2e-14
Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 9/118 (7%)
Query: 80 MINKTSITKGQRFIDIGCGFGLSGIRLAK--AKGCRVDGITISKFQQESAMKTAKAEGL- 136
MI++ + + +D+GCG G + +++A+ ++ G +S ++A +
Sbjct: 28 MIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT 87
Query: 137 LDKVNFLHGDALNLPF------DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSIL 188
V+F + + F D D E + A L+ +
Sbjct: 88 YKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTI 145
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 68.7 bits (168), Expect = 5e-14
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 14/136 (10%)
Query: 59 YWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGIT 118
++ N+ +A+ + + + + G + +++GCG G + A G VD
Sbjct: 16 FYRG-NATA-YAERQPRSATLTKFLGELPAGAKILELGCGAGYQAEAML-AAGFDVDATD 72
Query: 119 ISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AAL 175
S A L D++D W + H+ L
Sbjct: 73 GS----PELAAEASRRL---GRPVRTMLFHQLDAI-DAYDAVWAHACLLHVPRDELADVL 124
Query: 176 NEARRVLKSGSILTLT 191
R LK G + +
Sbjct: 125 KLIWRALKPGGLFYAS 140
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 68.3 bits (167), Expect = 1e-13
Identities = 36/183 (19%), Positives = 68/183 (37%), Gaps = 11/183 (6%)
Query: 59 YWDE--SNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDG 116
Y+D + D + I + + + +R +D+ CG G+ + LA+ +G V G
Sbjct: 11 YYDTIYRRRIERVKAEIDFVEEI-FKEDAKREVRRVLDLACGTGIPTLELAE-RGYEVVG 68
Query: 117 ITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGW-FFESIFHMNHS--- 172
+ + + A + AK L K+ FL GD L + F + FD FF +I + +
Sbjct: 69 LDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLR 125
Query: 173 AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGF 232
++ LK G + ++ K + + K F
Sbjct: 126 KLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQKLRF 185
Query: 233 ELI 235
+ +
Sbjct: 186 KRL 188
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 67.8 bits (166), Expect = 1e-13
Identities = 36/206 (17%), Positives = 76/206 (36%), Gaps = 16/206 (7%)
Query: 88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA 147
+ + +DIGC G G + + G RV GI A + AK + D V +
Sbjct: 32 EWKEVLDIGCSSGALGAAIKE-NGTRVSGIEAF----PEAAEQAKEKL--DHVVLGDIET 84
Query: 148 LNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFK 206
+++P++ + FD F + + H+ + A + + + +K ++ + + +S
Sbjct: 85 MDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLA 144
Query: 207 -EYVKKNI------HSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTY 259
+ H F + K+G+ + K+D + + P + E
Sbjct: 145 GNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDRVYVDH-KMYEPLIEELYGIC 203
Query: 260 KKEIYKSIPNPEKSIDNWLYLFKYMS 285
KK S E + ++ +
Sbjct: 204 KKYRLGSGFMAETVVFQYIIEAEKSQ 229
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding
protein, protein structure, N phosphoprotein, nuclear
protein; HET: SAH; 2.00A {Homo sapiens}
Length = 215
Score = 66.6 bits (162), Expect = 3e-13
Identities = 35/168 (20%), Positives = 54/168 (32%), Gaps = 40/168 (23%)
Query: 76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEG 135
+ RI + D GCG RLA + V ++
Sbjct: 55 VDRIARDLRQRPASLVVADFGCGDC----RLASSIRNPVHCFDLAS-------------- 96
Query: 136 LLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPL 195
D +P +++S D F S+ N L EA RVLK G +L + +
Sbjct: 97 --LDPRVTVCDMAQVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAE--- 151
Query: 196 LSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSH 243
+ S F V + + K GF+++ D SH
Sbjct: 152 -----------------VSSRFEDVRTFLRAVTKLGFKIVSKDLTNSH 182
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 66.6 bits (162), Expect = 3e-13
Identities = 16/103 (15%), Positives = 27/103 (26%), Gaps = 16/103 (15%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG 145
+T R ++ GCG G R R S +K A+A +
Sbjct: 46 LTPQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFS----PELLKLARANA--PHADVYEW 98
Query: 146 DAL-NLPF-DNDSFDGGWFFESIF-HMNHSAALNEARRVLKSG 185
+ LP F I ++ + +
Sbjct: 99 NGKGELPAGLGAPFGL------IVSRRGPTSVILRLPELAAPD 135
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 66.9 bits (163), Expect = 6e-13
Identities = 17/142 (11%), Positives = 45/142 (31%), Gaps = 7/142 (4%)
Query: 54 HMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCR 113
G++ + + + + +++ I + +D+GCG G + + L+ G
Sbjct: 86 ECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSL-LGYD 144
Query: 114 VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS- 172
V ++ +T + E L ++ D ++D +N
Sbjct: 145 VTSWDHNENSIAFLNETKEKENL--NISTALYDINAANIQE-NYDFIVSTVVFMFLNRER 201
Query: 173 --AALNEARRVLKSGSILTLTD 192
+ + + G +
Sbjct: 202 VPSIIKNMKEHTNVGGYNLIVA 223
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 64.3 bits (156), Expect = 2e-12
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 11/106 (10%)
Query: 59 YWDE--SNSKDNFA----QGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC 112
YWD+ + D+ ++ + + R + +GCG L
Sbjct: 9 YWDQRYQGAADSAPYDWFGDFSSFRALL--EPELRPEDRILVLGCGNSALSYELFLGGFP 66
Query: 113 RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFD 158
V + S + ++ + D L F + SFD
Sbjct: 67 NVTSVDYSSVVVAAMQACYAHVP---QLRWETMDVRKLDFPSASFD 109
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 64.5 bits (157), Expect = 2e-12
Identities = 35/210 (16%), Positives = 70/210 (33%), Gaps = 25/210 (11%)
Query: 77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL 136
+R+ +R +DIGCG G + L K +G G+ I++ +
Sbjct: 30 ARLRRYIPYFKGCRRVLDIGCGRG-EFLELCKEEGIESIGVDINEDMIKFCEG------- 81
Query: 137 LDKVNFLHGDALN--LPFDNDSFDGGWFFESIFHMNH---SAALNEARRVLKSGSILTLT 191
K N + DA+ + DG + H++ L+ +K S +
Sbjct: 82 --KFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYI--- 136
Query: 192 DLPLLSV--SKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLV 249
++ + + H + E +L GF +KI+ L
Sbjct: 137 ---VIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIE--FFEECEELT 191
Query: 250 PKLTEATLTYKKEIYKSIPNPEKSIDNWLY 279
+ T +E+ + I + ++ L+
Sbjct: 192 KLAKIDSNTVSEEVIRVINENIEKLNRILF 221
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 64.6 bits (157), Expect = 3e-12
Identities = 36/161 (22%), Positives = 58/161 (36%), Gaps = 24/161 (14%)
Query: 88 KGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD 146
K +DIGCG G A A G+ +SK ++A K V F
Sbjct: 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQ------VTFCVAS 138
Query: 147 ALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFK 206
+ LPF + S D + E RV+K G +++ +
Sbjct: 139 SHRLPFSDTSMDAIIRIYAP------CKAEELARVVKPGGW-------VITATPGPRHLM 185
Query: 207 EYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPL 247
E +K I++ L + + L GF L + ++ + M L
Sbjct: 186 E-LKGLIYNEVHLHAPHAEQL--EGFTLQQSAELC-YPMRL 222
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 63.3 bits (154), Expect = 7e-12
Identities = 32/141 (22%), Positives = 47/141 (33%), Gaps = 19/141 (13%)
Query: 53 GHMHW---GYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA 109
GHM W Y + D L+++ + + D+GCG G S L
Sbjct: 2 GHMAWSAQQY--LKFEDERTRPARDLLAQV-----PLERVLNGYDLGCGPGNSTELLTDR 54
Query: 110 KGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFH 168
G + GI M KA L NF D D +
Sbjct: 55 YGVNVITGIDSD-----DDM-LEKAADRLPNTNFGKADLATWKPA-QKADLLYANAVFQW 107
Query: 169 M-NHSAALNEARRVLKSGSIL 188
+ +H A L++ L+SG +L
Sbjct: 108 VPDHLAVLSQLMDQLESGGVL 128
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 61.8 bits (150), Expect = 3e-11
Identities = 22/162 (13%), Positives = 40/162 (24%), Gaps = 14/162 (8%)
Query: 33 KTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRF 92
L E + + Y D D ++ + +R
Sbjct: 33 HADVLLASVGERGVLCDFYDEGAADTYRDLIQDADGTSEAREFATRTGP------VSGPV 86
Query: 93 IDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL--LDKVNFLHGDALNL 150
+++ G G G V + +S + K D+ + GD
Sbjct: 87 LELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF 145
Query: 151 PFDNDSFDGGW-FFESIFHMNHS---AALNEARRVLKSGSIL 188
D F SI ++ + R L+ G
Sbjct: 146 ALDK-RFGTVVISSGSINELDEADRRGLYASVREHLEPGGKF 186
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 61.3 bits (149), Expect = 3e-11
Identities = 26/171 (15%), Positives = 49/171 (28%), Gaps = 15/171 (8%)
Query: 59 YWDESNSKD-NFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGI 117
+D+ D ++ + SD + + ++D+ CG G L K +
Sbjct: 9 IYDKLIRADVDYKKWSDFIIEKC--VENNLVFDDYLDLACGTGNLTENLCP-KFKNTWAV 65
Query: 118 TISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGW-FFESIFHM----NHS 172
+S+ A +++GL K D NL + FD +S ++ +
Sbjct: 66 DLSQEMLSEAENKFRSQGL--KPRLACQDISNLNINR-KFDLITCCLDSTNYIIDSDDLK 122
Query: 173 AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHY 223
LK G + + S K
Sbjct: 123 KYFKAVSNHLKEGGVFIFD---INSYYKLSQVLGNNDFNYDDDEVFYYWEN 170
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 60.2 bits (146), Expect = 6e-11
Identities = 28/184 (15%), Positives = 57/184 (30%), Gaps = 22/184 (11%)
Query: 53 GHMHW----GYWDE--SNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRL 106
GHM+ +D ++A + ++ ++ ++ + +D+ CG G
Sbjct: 1 GHMYEVDHADVYDLFYLGRGKDYAAEASDIADLV--RSRTPEASSLLDVACGTGTHLEHF 58
Query: 107 AKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGW-FFES 165
K + G+ +S M A L GD + F F S
Sbjct: 59 TK-EFGDTAGLELS-----EDM-LTHARKRLPDATLHQGDMRDFRLGR-KFSAVVSMFSS 110
Query: 166 IFHMNH----SAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVE 221
+ ++ AA+ L+ G ++ + + + D V + V
Sbjct: 111 VGYLKTTEELGAAVASFAEHLEPGGVVVV-EPWWFPETFADGWVSADVVRRDGRTVARVS 169
Query: 222 HYPD 225
H
Sbjct: 170 HSVR 173
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 59.2 bits (143), Expect = 1e-10
Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 8/110 (7%)
Query: 87 TKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDK----VN 141
+ +R ID+GCG G L K ++ G+ +S E A + L +
Sbjct: 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQ 87
Query: 142 FLHGDALNLPFDNDSFDGGWFFESIFHMNH---SAALNEARRVLKSGSIL 188
+ G +D E I H++ A + ++
Sbjct: 88 LIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVI 137
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 58.4 bits (141), Expect = 2e-10
Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 8/109 (7%)
Query: 88 KGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLD----KVNF 142
++ ID+GCG G L K K ++ G+ +S E A K + L + +++
Sbjct: 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISL 88
Query: 143 LHGDALNLPFDNDSFDGGWFFESIFHMNH---SAALNEARRVLKSGSIL 188
+ +D E I H++ A + +++
Sbjct: 89 FQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVI 137
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 57.8 bits (139), Expect = 7e-10
Identities = 26/207 (12%), Positives = 64/207 (30%), Gaps = 23/207 (11%)
Query: 59 YWDESNSKDNFAQG-SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-------K 110
+ + S + KL I+ + + IG G G +++
Sbjct: 22 FLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGV 81
Query: 111 GCRVDGITISKFQQESAMKTAKAEGLLDKVNF--------LHGDALNLPFDNDSFDGGWF 162
+ + S Q + L+ V F + + + +D
Sbjct: 82 CINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHM 141
Query: 163 FESIFHM-NHSAALNEARRVLKSGSILTLTDLPLLSV-SKNDNKFKEYVKKNIHSNFILV 220
+ ++++ + A L +L + + + + + S K K+ ++ +I
Sbjct: 142 IQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITS 201
Query: 221 EHYPDLLNKSGFELIKID-----DITS 242
+ +L+ G + D DI+
Sbjct: 202 DDLTQMLDNLGLKYECYDLLSTMDISD 228
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 55.9 bits (134), Expect = 3e-09
Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 9/113 (7%)
Query: 79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAKAEGL 136
+I + + G +++G G G + A + + + + AM
Sbjct: 101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD 160
Query: 137 LDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSIL 188
+ V D + D +D I + + + + ++K GS+
Sbjct: 161 IGNVRTSRSDIADFISD-QMYDAV-----IADIPDPWNHVQKIASMMKPGSVA 207
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 54.9 bits (132), Expect = 3e-09
Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 13/122 (10%)
Query: 83 KTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAKAEGLLDKV 140
K + +G +D CG G LA G RV G I + K L+D+V
Sbjct: 17 KMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRV 76
Query: 141 NFLHGDA------LNLPFDNDSFDGGWFFESIFHMNHS-----AALNEARRVLKSGSILT 189
+ ++ P F+ G+ ++ AL++A +L +G I+T
Sbjct: 77 TLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIIT 136
Query: 190 LT 191
+
Sbjct: 137 VV 138
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 55.6 bits (134), Expect = 3e-09
Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 17/137 (12%)
Query: 59 YWDE--SNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDG 116
+D ++ + + L+ ++ + K +D+ CG G+ LA + V+G
Sbjct: 21 LYDLVHQGKGKDYHREAADLAALV--RRHSPKAASLLDVACGTGMHLRHLADS-FGTVEG 77
Query: 117 ITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGW-FFESIFHM----NH 171
+ +S + M A A HGD + F F SI H+
Sbjct: 78 LELS-----ADM-LAIARRRNPDAVLHHGDMRDFSLGR-RFSAVTCMFSSIGHLAGQAEL 130
Query: 172 SAALNEARRVLKSGSIL 188
AAL + ++
Sbjct: 131 DAALERFAAHVLPDGVV 147
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 55.9 bits (134), Expect = 3e-09
Identities = 29/167 (17%), Positives = 53/167 (31%), Gaps = 14/167 (8%)
Query: 78 RIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLL 137
+I + +G +D+GCG G ++ +A G+ I++ A A+
Sbjct: 55 ACLIRLYT-KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR 113
Query: 138 DKVNFLHGDALNLPFD-NDSFDGGWFFESIFHMNHS-----AALNEARRVLKSGSILTLT 191
KV F D+ D FD S + + A R L+ G +T
Sbjct: 114 FKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 173
Query: 192 DLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKID 238
+ + E K+ SN + + + +
Sbjct: 174 VP-------SRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYR 213
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 54.8 bits (131), Expect = 1e-08
Identities = 19/111 (17%), Positives = 28/111 (25%), Gaps = 10/111 (9%)
Query: 88 KGQRFIDIGCGFGLSGIRLAKAKGC--RVDGITISKFQQESAMKTAKAEGL-----LDKV 140
+D GCG G L + G+ IS A K + +
Sbjct: 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSA 780
Query: 141 NFLHGDALNLPFDNDSFDGGWFFESIFHMN---HSAALNEARRVLKSGSIL 188
G L D G E I HM + + ++
Sbjct: 781 TLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLI 831
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 53.1 bits (127), Expect = 3e-08
Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 16/116 (13%)
Query: 88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL-LDKVNFLHGD 146
R +D+ CG G+ I L + G V + S + A+K ++ +
Sbjct: 57 GCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEE 115
Query: 147 ALNLPFDNDSFDGGWF------FESIFHM--------NHSAALNEARRVLKSGSIL 188
A L D D G F S H+ H AL +++ G +L
Sbjct: 116 ANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLL 171
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 52.6 bits (126), Expect = 3e-08
Identities = 24/194 (12%), Positives = 53/194 (27%), Gaps = 21/194 (10%)
Query: 59 YWDESNSKDNFAQGS-DKLSRIMINK-TSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDG 116
++ D + M+ T + +++G G + +
Sbjct: 11 EIKDTAGHKYAYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDF-TSRLQEHFNDITC 69
Query: 117 ITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAAL- 175
+ S E A+ A+ L D + ++H + +D + H++ AL
Sbjct: 70 VEAS----EEAISHAQ-GRLKDGITYIHSRFEDAQLPR-RYDNIVLTHVLEHIDDPVALL 123
Query: 176 -NEARRVLKSGSILTLT--DLPLLSVSKNDNKFKEYVKKNIHSNFILVEHY----PD--- 225
L G L L + +S + H D
Sbjct: 124 KRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLE 183
Query: 226 -LLNKSGFELIKID 238
+++G ++
Sbjct: 184 RDASRAGLQVTYRS 197
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 52.5 bits (125), Expect = 4e-08
Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 10/119 (8%)
Query: 75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAK 132
K + ++++ I G R ++ G G G + L +A G +V E A +
Sbjct: 86 KDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVS 145
Query: 133 A--EGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSIL 188
D + D + + S D ++ M L+ R+L +G +L
Sbjct: 146 GCYGQPPDNWRLVVSDLADSELPDGSVD-----RAVLDMLAPWEVLDAVSRLLVAGGVL 199
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 51.8 bits (124), Expect = 4e-08
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLH 144
+++G +D+G I L + + + +SA+K +A GL +K+
Sbjct: 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRL 72
Query: 145 GDALNLPFDNDSFD 158
+ L + D
Sbjct: 73 ANGLAAFEETDQVS 86
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 51.4 bits (123), Expect = 6e-08
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLH 144
ITK +R DIG K + + +SA K ++ GL ++++
Sbjct: 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRK 78
Query: 145 GDALNLPFDNDSFD 158
G+ L + D+ D
Sbjct: 79 GNGLAVIEKKDAID 92
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 51.3 bits (123), Expect = 9e-08
Identities = 12/73 (16%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA 147
+ + ID+ G G+ + L+ ++ G+ I + + A ++ L D++ + D
Sbjct: 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDL 108
Query: 148 LNLP--FDNDSFD 158
+ + D
Sbjct: 109 KKITDLIPKERAD 121
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 51.8 bits (124), Expect = 9e-08
Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 18/134 (13%)
Query: 70 AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAM 128
G D +R + +D+GCG G+ G+ L +V + S S+
Sbjct: 204 RTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSR 263
Query: 129 KTAKAEGL--LDKVNFLHGDALNLPFDNDSFD----------GGWFFESIFHMNHSAALN 176
+ LD+ F+ +AL+ + F+ +++ +
Sbjct: 264 LNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAW----EMFH 318
Query: 177 EARRVLKSGSILTL 190
ARR LK L +
Sbjct: 319 HARRCLKINGELYI 332
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 50.6 bits (121), Expect = 1e-07
Identities = 23/145 (15%), Positives = 41/145 (28%), Gaps = 24/145 (16%)
Query: 57 WGY---WDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCR 113
W E LS ++IGC G +LA R
Sbjct: 27 WRLDDNPFERERH--TQLLRLSLSS--------GAVSNGLEIGCAAGAFTEKLAP-HCKR 75
Query: 114 VDGITISKFQQESAMKTAKAE-GLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH- 171
+ I + A+ A +++ D L + FD E ++++
Sbjct: 76 LTVIDVM----PRAIGRACQRTKRWSHISWAATDILQFSTA-ELFDLIVVAEVLYYLEDM 130
Query: 172 ---SAALNEARRVLKSGSILTLTDL 193
A++ ++L G L
Sbjct: 131 TQMRTAIDNMVKMLAPGGHLVFGSA 155
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 49.6 bits (119), Expect = 2e-07
Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 17/126 (13%)
Query: 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKA 133
DK ++I++ + K +D+GCG+G+ GI LA + I++ + A + K
Sbjct: 38 DKGTKILVENVVVDKDDDILDLGCGYGVIGIALAD-EVKSTTMADINRRAIKLAKENIKL 96
Query: 134 EGLLD-KVNFLHGDALNLPFDNDSFDGGWFFESI-----FHMNHSAA---LNEARRVLKS 184
L + + +H D + ++ I + E + +LK
Sbjct: 97 NNLDNYDIRVVHSDLYE-NVKDRKYN------KIITNPPIRAGKEVLHRIIEEGKELLKD 149
Query: 185 GSILTL 190
+ +
Sbjct: 150 NGEIWV 155
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 49.9 bits (119), Expect = 2e-07
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLH 144
+ KG R +D+G I L + C + +SA+K GL K++
Sbjct: 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRL 78
Query: 145 GDALNLPFDNDSFD 158
+ L+ + D+ D
Sbjct: 79 ANGLSAFEEADNID 92
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 50.2 bits (119), Expect = 3e-07
Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 12/155 (7%)
Query: 60 WDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCR-VDGIT 118
E S + + + S L MI++ +T F+D+G G G +++A A C+ G+
Sbjct: 145 NYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVE 204
Query: 119 ISKF-------QQESAMKTAKAEGLLD-KVNFLHGDALNLPFDNDSFDGGWFFESIFHMN 170
+ K K G + GD L+ + + F + F
Sbjct: 205 KADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFG 264
Query: 171 HS--AALNEARRVLKSGS-ILTLTDLPLLSVSKND 202
L E +K G I++ L+ N
Sbjct: 265 PEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 299
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 48.8 bits (116), Expect = 5e-07
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 7/117 (5%)
Query: 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTA 131
K + +++ I+ G ++ G G G + LA G RV I + + A +
Sbjct: 79 PKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENI 138
Query: 132 KAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSIL 188
K G D+V D + + ++ D + A + LK G
Sbjct: 139 KWAGFDDRVTIKLKD-IYEGIEEENVDHVILDLP----QPERVVEHAAKALKPGGFF 190
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 48.7 bits (116), Expect = 5e-07
Identities = 15/119 (12%), Positives = 33/119 (27%), Gaps = 11/119 (9%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLA-KAKGCRVDGITISKFQQESAMKTAK---AEGLLDKVN 141
+ R D+G G G +G+ +A + + V S+ E A ++ + ++
Sbjct: 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIE 93
Query: 142 FLHGDALNLPFDN-------DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193
L D + F + + + + D
Sbjct: 94 VLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDW 152
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 49.2 bits (117), Expect = 6e-07
Identities = 30/134 (22%), Positives = 48/134 (35%), Gaps = 15/134 (11%)
Query: 69 FAQGSDKLSRIMIN------KTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKF 122
A D S +++ +G++ +D+G G+G + LA+ G V G+
Sbjct: 208 SAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLAR-MGAEVVGVEDDLA 266
Query: 123 QQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWF---FESIFHMNHSAA---LN 176
S K +A L K LH D + FD F + A +N
Sbjct: 267 SVLSLQKGLEANAL--KAQALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVN 324
Query: 177 EARRVLKSGSILTL 190
A L+ G + L
Sbjct: 325 VAAARLRPGGVFFL 338
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 47.7 bits (114), Expect = 7e-07
Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 11/114 (9%)
Query: 79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLD 138
+++ K +D+GCG G + LA RV I + + + GL D
Sbjct: 24 LIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGD 82
Query: 139 KVNFLHGDALNLPFDNDSFDGGWFFESIF----HMNHSAALNEARRVLKSGSIL 188
V + GDA D L + LK G +
Sbjct: 83 NVTLMEGDAPEALCKIPDID------IAVVGGSGGELQEILRIIKDKLKPGGRI 130
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 47.6 bits (113), Expect = 8e-07
Identities = 15/122 (12%), Positives = 32/122 (26%), Gaps = 13/122 (10%)
Query: 81 INKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKV 140
+ +D G G LA +V + + + G ++
Sbjct: 15 FLAEVLDDESIVVDATMGNGNDTAFLAG-LSKKVYAFDVQEQALGKTSQRLSDLG-IENT 72
Query: 141 NFLHGDALNLP------FDNDSFDGGWFFESIFHMNHSA-----ALNEARRVLKSGSILT 189
+ NL F+ G+ + + A+ + L+ G L
Sbjct: 73 ELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLA 132
Query: 190 LT 191
+
Sbjct: 133 IM 134
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 48.1 bits (115), Expect = 1e-06
Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 25/131 (19%)
Query: 74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAK-AKGCRVDGITISKFQQESAMKTAK 132
D S+++++ + + +D+GCG G+ + A+ + R+ +S E++ T
Sbjct: 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLA 241
Query: 133 AEGLLDKVNFLHGDAL-NLPFDNDSFDGGWFFESI-----FH----MNHSAA---LNEAR 179
A G+ + + + FD I FH + AA + A
Sbjct: 242 ANGV--EGEVFASNVFSEVK---GRFD------MIISNPPFHDGMQTSLDAAQTLIRGAV 290
Query: 180 RVLKSGSILTL 190
R L SG L +
Sbjct: 291 RHLNSGGELRI 301
>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics
hypothetical protein, structure 2 function project, S2F,
TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP:
c.66.1.14
Length = 244
Score = 47.6 bits (112), Expect = 1e-06
Identities = 33/224 (14%), Positives = 76/224 (33%), Gaps = 24/224 (10%)
Query: 37 TLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIG 96
TL+ +P ++G +F ++ + + + + + M+ + +T D+G
Sbjct: 8 TLFSTPIAKLGDFIFDENV-AEVFPDMIQRSVPGYSNIITAIGMLAERFVTADSNVYDLG 66
Query: 97 CGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD 153
C G + + + ++ GI S+ E + A V L D ++
Sbjct: 67 CSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK 126
Query: 154 NDSFDGGWF-FESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKN 212
N S F + + + A L + L +L L++ +K ++ + +
Sbjct: 127 NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQF 186
Query: 213 IHSNFIL-------------------VEHYPDLLNKSGFELIKI 237
+N +E + L GF +++
Sbjct: 187 KRANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGFSQVEL 230
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 47.7 bits (113), Expect = 1e-06
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 85 SITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLH 144
K +D CG G + I+ A G RV I I + A A+ G+ DK+ F+
Sbjct: 75 QSFKCDVVVDAFCGVGGNTIQFAL-TGMRVIAIDIDPVKIALARNNAEVYGIADKIEFIC 133
Query: 145 GDALNL 150
GD L L
Sbjct: 134 GDFLLL 139
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 1e-06
Identities = 53/309 (17%), Positives = 89/309 (28%), Gaps = 88/309 (28%)
Query: 1 MNKIDTQKNKNKDIKDIKENKDIKENKGNKGKKTVATLYDSPE----------GQIGSVL 50
+ + + + E K K D P I +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 51 FGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITK------GQRFIDIGCGFG---- 100
G W W N DKL+ I+ ++S+ + F + F
Sbjct: 338 RDGLATWDNWKHVN--------CDKLTTII--ESSLNVLEPAEYRKMFDRLSV-FPPSAH 386
Query: 101 -----LSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL-------------LDKVNF 142
LS + + ++K + S ++ E L+
Sbjct: 387 IPTILLS--LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 143 LHG---DALNLP--FDNDSF-----DGGWFFESIFHM---NHSAALNEARRVL------- 182
LH D N+P FD+D D ++ H+ H + R V
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 183 -----------KSGSIL-TLTDLPLLS--VSKNDNKFKEYVKKNIHSNFILVEHYPDLLN 228
SGSIL TL L + ND K++ V + F L + +L+
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD--F-LPKIEENLIC 561
Query: 229 KSGFELIKI 237
+L++I
Sbjct: 562 SKYTDLLRI 570
Score = 36.0 bits (82), Expect = 0.013
Identities = 43/347 (12%), Positives = 87/347 (25%), Gaps = 116/347 (33%)
Query: 31 GKKTVA--TLYDSPEGQIGSVLFGGHMHW---GYWDE----------------------- 62
GK VA + W +
Sbjct: 162 GKTWVALDVCLSYKVQC----KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 63 ---SNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGI---RLAKA--KGCRV 114
SN K +L R++ +K + + + L + + A C++
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSK----PYENCLLV-----LLNVQNAKAWNAFNLSCKI 268
Query: 115 DGIT--ISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS 172
T SA T + + +L
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL------------LLKYLDCR-- 314
Query: 173 AALNEARRVLKSGSILTLTDLP-LLSVSKNDNKFKEYVKKNIHSNFIL--VEHYPDLLNK 229
+ R + + + L+ + + ++V + + I + +
Sbjct: 315 --PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 230 SGFELIKI--DD--ITSHVMPLL------------VPKLTEATLTYK--KEIYKSIP--- 268
F+ + + I + ++ L+ V KL + +L K KE SIP
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 269 ---------------------NPEKSIDNW----LYLFKYMSKNLGY 290
N K+ D+ YL +Y ++G+
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Score = 32.5 bits (73), Expect = 0.17
Identities = 37/308 (12%), Positives = 93/308 (30%), Gaps = 84/308 (27%)
Query: 3 KIDTQKNKNKDI-----KDIKENKDIKENKGNKGKKTVATLYDSPEGQIGSVLFGGHMHW 57
+ + + KDI +N D K+ + D P+ S+L
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKD------------VQDMPK----SIL------- 46
Query: 58 GYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVD-G 116
+++ I+++K +++ R ++ + R++
Sbjct: 47 --------------SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 117 ITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALN 176
+S + E + +++ + L+ D N F ++ + L
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYND--NQVFAKY---------NVSRLQPYLKLR 141
Query: 177 EARRVLKSGSILTL--------TDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHY--PDL 226
+A L+ + + T + L K + + I ++ +++ P+
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVC--LSYKVQCKMDFKIF--WLNLKNCNSPET 197
Query: 227 LNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPNPEKSIDNWL-YLFKYMS 285
+ L + + + P T + + +I SI L L K
Sbjct: 198 V------LEMLQKLLYQIDP---------NWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 286 KNLGYIIV 293
+++
Sbjct: 243 YENCLLVL 250
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 46.7 bits (111), Expect = 2e-06
Identities = 30/174 (17%), Positives = 54/174 (31%), Gaps = 39/174 (22%)
Query: 79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLD 138
+ + + +G+ DIG G G + A G R I + E+ K GL
Sbjct: 46 LTLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSP 104
Query: 139 KVNFLHGDALNLPFDNDSFDGGWFFESIFHM--NHSAALNEARRVLKSGSILTLTDLPLL 196
++ + G A D + ++F A + L G+ +
Sbjct: 105 RMRAVQGTAPAALADLPLPE------AVFIGGGGSQALYDRLWEWLAPGTRIVA------ 152
Query: 197 SVSKNDNKFKEYVKKNIHSNFILVEHYPDL---LNKSGFELIKIDDITSHVMPL 247
N + +E L + G +L++ID + PL
Sbjct: 153 -------------------NAVTLESETLLTQLHARHGGQLLRID--IAQAEPL 185
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research; 2.33A {Bacteroides vulgatus}
Length = 363
Score = 47.4 bits (113), Expect = 2e-06
Identities = 26/194 (13%), Positives = 58/194 (29%), Gaps = 31/194 (15%)
Query: 87 TKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKF----QQESAMKTAKAEGLLDKVN 141
+R +DIG G + + K V TI Q E K ++++
Sbjct: 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEV---TI--VDLPQQLEMMRKQTAGLSGSERIH 232
Query: 142 FLHGDALNLPFDNDSFDGG---WFFESIFHMNHSAA-----LNEARRVLKSGSILTLTDL 193
+ L+ + F G + S L + + S + + +
Sbjct: 233 GHGANLLD---RDVPFPTGFDAVWMSQFLD-CFSEEEVISILTRVAQSIGKDSKVYIME- 287
Query: 194 PLLSVSKNDNKFKEYVKKNIHSNFIL--------VEHYPDLLNKSGFELIKIDDITSHVM 245
L + + + +++ + + + +G E+ +I D
Sbjct: 288 TLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGH 347
Query: 246 PLLVPKLTEATLTY 259
+L +L E +
Sbjct: 348 SILQCRLKEGHHHH 361
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 45.9 bits (108), Expect = 4e-06
Identities = 33/183 (18%), Positives = 64/183 (34%), Gaps = 13/183 (7%)
Query: 93 IDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAK---AEGLLDKVNFLHGDAL 148
ID+G G G + +LA GI K K ++G L V F+ A
Sbjct: 29 IDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAE 88
Query: 149 NLPFD----NDSFDGGWFFESIFH---MNHSAALNEARRVLKSGSILTLTDLPLLSVSKN 201
+LPF+ DS + + ++ + L+ + K + S +
Sbjct: 89 SLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEA 148
Query: 202 DNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKK 261
+ K + + + L E Y L+ SGF + + ++ + + + +K
Sbjct: 149 EIKKRGLPL--LSKAYFLSEQYKAELSNSGFRIDDVKELDNEYVKQFNSLWAKRLAFGRK 206
Query: 262 EIY 264
+
Sbjct: 207 RSF 209
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 44.5 bits (106), Expect = 1e-05
Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 12/109 (11%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFL 143
I + Q + G G G + A+A RV I + E A + GL+D+V
Sbjct: 54 IKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQ 113
Query: 144 HGDALNLPFDNDSFDGGWFFESIF----HMNHSAALNEARRVLKSGSIL 188
GD L + D +F N + L R L ++L
Sbjct: 114 VGDPLGIAAGQRDID---I---LFMDCDVFNGADVLERMNRCLAKNALL 156
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 44.4 bits (106), Expect = 2e-05
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 81 INKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAK--AE--GL 136
+ + DIG G G G+ +AK V +S A++ A+ AE G+
Sbjct: 116 LELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVS----SKAVEIARKNAERHGV 171
Query: 137 LDKVNFLHGDALN-LPFDNDSFD 158
D+ G+ L S +
Sbjct: 172 SDRFFVRKGEFLEPFKEKFASIE 194
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 44.0 bits (104), Expect = 3e-05
Identities = 28/135 (20%), Positives = 45/135 (33%), Gaps = 27/135 (20%)
Query: 75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-----KGCRVDGITISKFQQESAMK 129
L++ ++ G R +D G SG +A V + + + A +
Sbjct: 190 VLAQALLRLADARPGMRVLDPFTG---SGTIALEAASTLGPTSPVYAGDLDEKRLGLARE 246
Query: 130 TAKAEGLLDKVNFLHGDALNLPFDNDSFDG-------GWFFESI-----FHMNHSAALNE 177
A A GL + FL DA +LP D G + + L
Sbjct: 247 AALASGL-SWIRFLRADARHLPRFFPEVDRILANPPHG---LRLGRKEGLFHLYWDFLRG 302
Query: 178 ARRVLKSG---SILT 189
A +L G ++LT
Sbjct: 303 ALALLPPGGRVALLT 317
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 42.3 bits (99), Expect = 9e-05
Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 9/117 (7%)
Query: 75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC--RVDGITISKFQQESAMKTAK 132
K S + + +G R ID G G G LA+A G +V + + A
Sbjct: 99 KDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLT 158
Query: 133 AEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSIL 188
GL+++V D ++ FD + + +++ LK G
Sbjct: 159 KWGLIERVTIKVRDI------SEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRF 209
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 41.2 bits (96), Expect = 1e-04
Identities = 27/170 (15%), Positives = 53/170 (31%), Gaps = 25/170 (14%)
Query: 88 KGQRFIDIGCGFGLSGIRLAKAKGCR-VDGITISKFQQESAMKTA---KAEGLLDKVNFL 143
+D+G G G ++A+ R V + K + E A A+G L + +L
Sbjct: 27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYL 86
Query: 144 HGDALNLPFDND----SFDGGWFFESIFH---MNHSAALNEARRVLKSGSILTLTDLPLL 196
A LP + W S+ + L V + G+ +
Sbjct: 87 WATAERLPPLSGVGELHVLMPW--GSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL---- 140
Query: 197 SVSKNDNKFKEYV----KKNIHSNFILVEHYPDLLNKSGFELIKIDDITS 242
N + ++ V + + E ++G++L +
Sbjct: 141 ----NLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADCRYLEP 186
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 42.1 bits (98), Expect = 1e-04
Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 4/76 (5%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL-LDKVNFLH 144
I +G + +D+ G G+ I L + I + +A VN L
Sbjct: 91 IREGTKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILT 149
Query: 145 GDALNL--PFDNDSFD 158
GD D
Sbjct: 150 GDFKEYLPLIKTFHPD 165
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 42.0 bits (98), Expect = 2e-04
Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
Query: 79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRV---DGITISKFQQESAMKTAKAEG 135
I+ N T K + +D+GCG G+ A+A ++ + T+++ A K+
Sbjct: 150 ILQNHTDF-KDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQH----AEVLVKSNN 204
Query: 136 LLDKVNFLHGDA--LNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSIL 188
L D++ + G ++LP D +F+ + A++ LK +
Sbjct: 205 LTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNM 259
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 41.5 bits (97), Expect = 2e-04
Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
Query: 79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRV---DGITISKFQQESAMKTAKAEG 135
I+ N T K + +D+GCG G+ A+A ++ + T+++ A K+
Sbjct: 42 ILQNHTDF-KDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQH----AEVLVKSNN 96
Query: 136 LLDKVNFLHGDA--LNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSIL 188
L D++ + G ++LP D +F+ + A++ LK +
Sbjct: 97 LTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNM 151
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 41.4 bits (97), Expect = 2e-04
Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 8/103 (7%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG 145
++ +D+ G G +A ++ I I+ E K K L K+ +
Sbjct: 193 VSLNDVVVDMFAGVG--PFSIACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILS 250
Query: 146 DALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSIL 188
D + + + +++A +++ G ++
Sbjct: 251 DVREVDVKGNRVIMNLPKFAH------KFIDKALDIVEEGGVI 287
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 41.3 bits (96), Expect = 3e-04
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 11/116 (9%)
Query: 79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRV---DGITISKFQQESAMKTAKAEG 135
+ NK +G+ +D+G G G+ I A+A +V + ++ A KA
Sbjct: 55 VFQNKHHF-EGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADH----ARALVKANN 109
Query: 136 LLDKVNFLHGDA--LNLPFDNDSFDGGWFFESIFHMNHSAALNEAR-RVLKSGSIL 188
L V + G ++LP D W + + ++ AR R LK ++
Sbjct: 110 LDHIVEVIEGSVEDISLPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVM 165
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll,
BCHU, SAM, SAH, adenosylmethyonine,
S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium
tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Length = 359
Score = 40.8 bits (96), Expect = 3e-04
Identities = 36/239 (15%), Positives = 76/239 (31%), Gaps = 42/239 (17%)
Query: 35 VATLYDSPEGQIGSVLFGGHMHWGYWD--ESNSKDN--FAQGSDKLSRIMINKT----SI 86
+A L D + + G G +DN F + ++ I +
Sbjct: 129 MAFLADDFYMGLSQAVRGQKNFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAKL 188
Query: 87 TKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQ----ESAMKTAKAEGLLDKVN 141
++ ID+G G G + K TI + + A +G+ D++
Sbjct: 189 DGVKKMIDVGGGIGDISAAMLKHFPELDS---TI--LNLPGAIDLVNENAAEKGVADRMR 243
Query: 142 FLHGDALNLPFDNDSFDGG--WFFESIFHMNHSAA-----LNEARRVLKSGSILTLTDLP 194
+ D +S+ F I + + + +A ++SG L + D
Sbjct: 244 GIAVDIYK-----ESYPEADAVLFCRILY-SANEQLSTIMCKKAFDAMRSGGRLLILD-M 296
Query: 195 LLSVSKNDNKFKEYVKKNIHSNFILV--------EHYPDLLNKSGFELIKIDDITSHVM 245
++ +N N I + Y ++L G++ + + H++
Sbjct: 297 VIDDPENPNFDYLSH--YILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKYDHLL 353
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 40.2 bits (95), Expect = 3e-04
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 16/90 (17%)
Query: 77 SRIMINKTSITKGQRFIDIGCGFGLSG---IRLAKA-KGCRVDGITISKFQQESAMKTAK 132
SR + KT + G+ ++IG G +A+ C+V + E + A+
Sbjct: 44 SRYIFLKTFLRGGEVALEIGTG---HTAMMALMAEKFFNCKVTATEVD----EEFFEYAR 96
Query: 133 --AE--GLLDKVNFLHGDALNLPFDNDSFD 158
E ++ +G + +FD
Sbjct: 97 RNIERNNSNVRLVKSNGGIIK-GVVEGTFD 125
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 40.8 bits (95), Expect = 3e-04
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 14/118 (11%)
Query: 79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLD 138
I+ NK K + +D+GCG G+ + AK V G+ +S E A + + G D
Sbjct: 30 IIQNKDLF-KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSI-IEMAKELVELNGFSD 87
Query: 139 KVNFLHGDA--LNLPFD------NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSIL 188
K+ L G ++LPF ++ +ES+ A L G ++
Sbjct: 88 KITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYA----RDHYLVEGGLI 141
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 40.4 bits (95), Expect = 4e-04
Identities = 26/227 (11%), Positives = 61/227 (26%), Gaps = 54/227 (23%)
Query: 56 HWGYWDESNSKDNFAQGSDKLSRIMINKT------SITKGQRFIDIGCGFGLSGIRLAKA 109
E FA+ + + + + +DI GL GI +A+
Sbjct: 127 EGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQH 186
Query: 110 KGCRVDGITISKFQQ----ESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGW---F 162
I E A + A+ +G+ + + + G + +
Sbjct: 187 ----NPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGS-----AFEVDYGNDYDLVL 237
Query: 163 FESIFHMNHSAA-----LNEARRVLKSGSILTLTDLPLLSVSKNDNKF------------ 205
+ H + A L + + L + + D + + +
Sbjct: 238 LPNFLH-HFDVATCEQLLRKIKTALAVEGKVIVFD-FIPNSDRITPPDAAAFSLVMLATT 295
Query: 206 ---KEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLV 249
Y Y + + +GF ++ + + ++V
Sbjct: 296 PNGDAYT----------FAEYESMFSNAGFSHSQLHSLPTTQQQVIV 332
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 39.5 bits (93), Expect = 6e-04
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLH 144
+ + ++IG G S ++ A V I ++ + A + ++V +
Sbjct: 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIE 128
Query: 145 GDALN-LP-FDNDSFD 158
G+AL ++ +D
Sbjct: 129 GNALEQFENVNDKVYD 144
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 39.3 bits (91), Expect = 7e-04
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 8/117 (6%)
Query: 75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAK 132
K + M+ + G R ++ G G G + LA+A + V+ A + +
Sbjct: 83 KDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVR 142
Query: 133 AEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSIL 188
A ++ V F G + ++DG + L +A LK L
Sbjct: 143 AFWQVENVRFHLGKLEEAELEEAAYDGV-----ALDLMEPWKVLEKAALALKPDRFL 194
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural genomics,
nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Length = 233
Score = 39.2 bits (92), Expect = 7e-04
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLH 144
+ R ++IG G S IR+A+A + I + + E A K KA GL ++ L
Sbjct: 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLF 111
Query: 145 GDALNL--------PFD 153
GDAL L FD
Sbjct: 112 GDALQLGEKLELYPLFD 128
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 39.6 bits (91), Expect = 8e-04
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 2/91 (2%)
Query: 69 FAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESA 127
+ S + R+ + K +G+ +D+GC G + +A G R+ G+ I SA
Sbjct: 27 YRNPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSA 86
Query: 128 MKTAKAEGLLDKVNFLHGDALNLPFDNDSFD 158
+ + +++ P
Sbjct: 87 RQNIRHYL-SEELRLPPQTLEGDPGAEGEEG 116
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 39.3 bits (91), Expect = 8e-04
Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 6/114 (5%)
Query: 79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLD 138
I N K + +D+GCG G+ + AKA +V G+ S+ + AM + L D
Sbjct: 56 IYQNPHIF-KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLED 113
Query: 139 KVNFLHGDALNLPFDNDSFD---GGWFFESIFHMNHSAALNEAR-RVLKSGSIL 188
+ + G + + D W + + ++ A+ + L G +
Sbjct: 114 TITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSV 167
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone
methyltransferase, nucleosome; HET: SAH; 2.20A
{Saccharomyces cerevisiae} SCOP: c.66.1.31
Length = 433
Score = 39.5 bits (91), Expect = 9e-04
Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 14/137 (10%)
Query: 80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITI-------SKFQQESAMKTA 131
+ + + KG F+D+G G G ++ A GC G I + Q E K
Sbjct: 234 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRC 293
Query: 132 KAEGL--LDKVNFLHGDALNLPFDNDSFDGG---WFFESIFHMNHSAALNEARRVLKSGS 186
K G+ + L ++ + +F + + + + + K G
Sbjct: 294 KLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGC 353
Query: 187 -ILTLTDLPLLSVSKND 202
I++L L L+ N
Sbjct: 354 KIISLKSLRSLTYQINF 370
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural
genomics, riken structural genomics/proteomics in RSGI;
HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Length = 392
Score = 39.5 bits (91), Expect = 0.001
Identities = 27/174 (15%), Positives = 53/174 (30%), Gaps = 7/174 (4%)
Query: 79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAKAEGL 136
+ + + + D G+ IR + IS E + K +
Sbjct: 43 LEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNI 102
Query: 137 LDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSIL--TLTDLP 194
+ +HG N + G + + + +K G IL T TD
Sbjct: 103 PEDRYEIHGMEANFFLRKEWGFGFDYVDLDPFGTPVPFIESVALSMKRGGILSLTATDTA 162
Query: 195 LLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLL 248
LS + + Y+ + + + F L+ K + D ++P+
Sbjct: 163 PLSGTYPKTCMRRYMARPLRNEFKHEVGIRILIKKVIELAAQYD---IAMIPIF 213
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 38.3 bits (90), Expect = 0.001
Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 17/109 (15%)
Query: 55 MHWGYWDESNSKDNFAQGSDKLS-----RIM-INKTSITKGQRFIDIGCGFGLSGIRLAK 108
M + DE F + R + I K ++ K +D+GCG G + +AK
Sbjct: 1 MKYMIPDEE-----FIRREGVPITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK 55
Query: 109 AKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL----NLPFD 153
+ V I E + + + G A L F+
Sbjct: 56 -RCKFVYAIDYLDGAIEVTKQNLAKFN-IKNCQIIKGRAEDVLDKLEFN 102
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 39.2 bits (91), Expect = 0.001
Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 12/107 (11%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG 145
+ +D+ G G + +A +V I + + ++ + D+++ +
Sbjct: 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM 182
Query: 146 DALNLPFDNDSFDGGWFFESIFHMN--HSA--ALNEARRVLKSGSIL 188
D + P +N D M + +A + K G+I+
Sbjct: 183 DNRDFPGEN-IAD-------RILMGYVVRTHEFIPKALSIAKDGAII 221
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 38.8 bits (91), Expect = 0.001
Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFL 143
+T+ +R ++IG G S I +A+ ++ + + A + + G+ +V
Sbjct: 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLR 120
Query: 144 HGDALN-LP--FDNDSFD 158
G AL L + +FD
Sbjct: 121 EGPALQSLESLGECPAFD 138
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 39.0 bits (90), Expect = 0.001
Identities = 25/124 (20%), Positives = 41/124 (33%), Gaps = 10/124 (8%)
Query: 75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC--RVDGITISKFQQESAMKTAK 132
K ++++ I G ++ G G G + L+KA G RV + K + A K K
Sbjct: 92 KDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYK 151
Query: 133 AEGLLDKVNFLHGDALNLPFDNDSF--DGGWFFESIFHM------NHSAALNEARRVLKS 184
K++ + N+ F + F N L LK
Sbjct: 152 HWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKH 211
Query: 185 GSIL 188
G +
Sbjct: 212 GGVC 215
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 38.1 bits (89), Expect = 0.002
Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 7/110 (6%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFL 143
+ + ++IG G S + A A + ++ + I+K E + K G+ K++F
Sbjct: 77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFR 136
Query: 144 HGDALN-LPFDNDSFDGGWFFESIF----HMNHSAALNEARRVLKSGSIL 188
G AL L ++ IF N+ ++K G ++
Sbjct: 137 EGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVI 186
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 38.0 bits (89), Expect = 0.002
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFL 143
+T ++ ++IG G S + +A ++ A K + G+ +K++
Sbjct: 70 LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLR 129
Query: 144 HGDAL 148
G AL
Sbjct: 130 LGPAL 134
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.002
Identities = 42/274 (15%), Positives = 77/274 (28%), Gaps = 95/274 (34%)
Query: 2 NKID--TQKNKNKDIKDIKENKDIKENKGNKGKKTVATLYDSPEGQIGSVLFGGHMHWGY 59
N+ D + I DI + N + + +G+ + +
Sbjct: 1647 NRADNHFKDTYGFSILDI-----VINNP-----VNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 60 WDES-NSKDNFAQGSDKLSRIM-------INKTSIT---------------KGQRFIDIG 96
D ++ F + ++ + ++ T T K + I
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPAD 1756
Query: 97 CGF-GLSGIRL----AKAKGCRVDGITISKFQQESAMKTAKAEGLL-------DKVNFLH 144
F G S L A A D ++I ES ++ G+ D++ +
Sbjct: 1757 ATFAGHS---LGEYAALA--SLADVMSI-----ESLVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 145 GD--ALN-----LPFDNDSFD---------GGWFFESI--FHMN----------HSAALN 176
A+N F ++ GW E I + N AL+
Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE-IVNY--NVENQQYVAAGDLRALD 1863
Query: 177 EARRVL---KSGSILTLTDLPLLSVSKNDNKFKE 207
VL K I D+ L S + + +
Sbjct: 1864 TVTNVLNFIKLQKI----DIIELQKSLSLEEVEG 1893
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 38.0 bits (89), Expect = 0.002
Identities = 19/110 (17%), Positives = 43/110 (39%), Gaps = 7/110 (6%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFL 143
+ ++ I++G G S + A + ++ I + E + + G+ K+NF+
Sbjct: 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFI 127
Query: 144 HGDALN-LPFDNDSFDGGWFFESIF----HMNHSAALNEARRVLKSGSIL 188
DA+ L + ++ F N+ +++K G I+
Sbjct: 128 ESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIV 177
>2h00_A Methyltransferase 10 domain containing protein; structural
genomics, structural genomics consortium, SGC; HET: SAH;
2.00A {Homo sapiens} SCOP: c.66.1.54
Length = 254
Score = 37.8 bits (87), Expect = 0.002
Identities = 15/90 (16%), Positives = 25/90 (27%), Gaps = 1/90 (1%)
Query: 79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLL 137
I + + +R IDIG G L G + A K + L
Sbjct: 56 IGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS 115
Query: 138 DKVNFLHGDALNLPFDNDSFDGGWFFESIF 167
D + + L D + ++
Sbjct: 116 DLIKVVKVPQKTLLMDALKEESEIIYDFCM 145
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH; 2.70A
{Vaccinia virus}
Length = 302
Score = 37.8 bits (87), Expect = 0.002
Identities = 28/228 (12%), Positives = 57/228 (25%), Gaps = 23/228 (10%)
Query: 82 NKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVN 141
+ ++ + I G G + + + + K
Sbjct: 42 TFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTK 101
Query: 142 FLHGDALNLPFDNDSF---------DGGWFFESIFHMNHSAALNEAR--------RVLKS 184
+ D + +D+F G + H + + S
Sbjct: 102 YYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS 161
Query: 185 GS--ILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITS 242
G ++T D LS + F + N++ VE D +T
Sbjct: 162 GGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDRIVVYNPSTMSTPMTE 221
Query: 243 HV--MPLLVPKLTEA--TLTYKKEIYKSIPNPEKSIDNWLYLFKYMSK 286
++ +V E L + I +K I+ + S
Sbjct: 222 YIIKKNDIVRVFNEYGFVLVDNVDFATIIERSKKFINGASTMEDRPST 269
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation,
transferase transferase inhibitor complex; HET: SAH;
1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A*
3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A*
1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A*
3s68_A* 2zlb_A 2zth_A* ...
Length = 221
Score = 37.3 bits (87), Expect = 0.003
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFL 143
+++G G S +R+A+ G R+ + I+ + GL DKV L
Sbjct: 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTIL 115
Query: 144 HGDA------LNLPFDNDSFD 158
+G + L +D D+ D
Sbjct: 116 NGASQDLIPQLKKKYDVDTLD 136
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 37.3 bits (87), Expect = 0.003
Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 15/128 (11%)
Query: 70 AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESA 127
+ + +L + T+ I I GL G+ + + I Q A
Sbjct: 38 DEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQA 97
Query: 128 MKT-AKAEGLLDKVNFLHGDALN-LP-FDNDSFDGGWFFESIF----HMNHSAALNEARR 180
+A +V FL L+ + NDS+ +F M+ A ++ A
Sbjct: 98 KALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQ------LVFGQVSPMDLKALVDAAWP 151
Query: 181 VLKSGSIL 188
+L+ G L
Sbjct: 152 LLRRGGAL 159
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 37.2 bits (87), Expect = 0.003
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFL 143
I + ++IG G S I LA+ G RV + S+ + A + L D+V
Sbjct: 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVR 115
Query: 144 HGDAL 148
G AL
Sbjct: 116 TGLAL 120
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 37.3 bits (87), Expect = 0.003
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFL 143
I+ +R I+IG G S + A A + ++ +S+ A K K GL +K+
Sbjct: 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLK 117
Query: 144 HGDAL 148
G AL
Sbjct: 118 LGSAL 122
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine,
drug metabolism; NMR {Pseudomonas syringae PV} SCOP:
c.66.1.36
Length = 203
Score = 37.1 bits (85), Expect = 0.004
Identities = 15/125 (12%), Positives = 32/125 (25%), Gaps = 16/125 (12%)
Query: 81 INKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLL--- 137
+ ++ G R + CG L+ +G V G +S+ E + +
Sbjct: 15 WSSLNVVPGARVLVPLCGKSQDMSWLSG-QGYHVVGAELSEAAVERYFTERGEQPHITSQ 73
Query: 138 --------DKVNFLHGDALNL-PFDNDSFDGGW---FFESIFHMNHSAALNEARRVLKSG 185
+ GD L D + ++ + ++
Sbjct: 74 GDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA 133
Query: 186 SILTL 190
L
Sbjct: 134 CSGLL 138
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 36.5 bits (85), Expect = 0.006
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFL 143
+ + ++ IDIG G S I + A K + + + A + + GL DK+
Sbjct: 62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLR 121
Query: 144 HGDAL 148
A
Sbjct: 122 LSPAK 126
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 36.1 bits (83), Expect = 0.008
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 7/110 (6%)
Query: 80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDK 139
+ K ++ K +R ++ G G G L++ G + ++A K K L
Sbjct: 83 IALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVW-TFEAVEEFYKTAQKNLKKFNLGKN 141
Query: 140 VNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSIL 188
V F + D F + G F + + L + + L G+ +
Sbjct: 142 VKFFNVD-----FKDAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEGAPV 186
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump
domain, tRNA methyltransferase; HET: SAM; 1.95A
{Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Length = 373
Score = 36.3 bits (84), Expect = 0.008
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 76 LSRIMINKTSITKGQRFIDIGCGFGLSGI---RLAKAKGCRVDGITISKFQQESAMKTAK 132
++ MI + G +D CG G I + + GI + A A
Sbjct: 206 IANAMIELAEL-DGGSVLDPMCGSG--TILIELALRRYSGEIIGIEKYRKHLIGAEMNAL 262
Query: 133 AEGLLDKVNFLHGDALNLPFDNDSFD 158
A G+LDK+ F+ GDA L DS D
Sbjct: 263 AAGVLDKIKFIQGDATQLSQYVDSVD 288
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 35.8 bits (83), Expect = 0.011
Identities = 31/213 (14%), Positives = 66/213 (30%), Gaps = 44/213 (20%)
Query: 51 FGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTS----ITKGQRFIDIGCGFGLSGIRL 106
+ ++ ++D F +LS+ M++ S + + ID+ G G ++
Sbjct: 138 LAFQQESRFAHDTRARDAFNDAMVRLSQPMVDVVSELGVFARARTVIDLAGGHGTYLAQV 197
Query: 107 AKA-KGCRVDGITISKFQQ----ESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGW 161
+ I + ++A KT A L +V F + D +F+GG
Sbjct: 198 LRRHPQLTG---QI--WDLPTTRDAARKTIHAHDLGGRVEFFEKNL----LDARNFEGGA 248
Query: 162 ----FFESIFHMNHSAA-----LNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKN 212
H A + A ++K G L + ++ +
Sbjct: 249 ADVVMLNDCLH-YFDAREAREVIGHAAGLVKPGGALLILT-MTMNDDRVTPALSAD---- 302
Query: 213 IHSNFILV----------EHYPDLLNKSGFELI 235
S ++V ++ +G +
Sbjct: 303 -FSLHMMVNTNHGELHPTPWIAGVVRDAGLAVG 334
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 35.3 bits (82), Expect = 0.013
Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFL 143
+T+ ++ +++G G S + ++ A +V I++ + A + K+
Sbjct: 58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLR 117
Query: 144 HGDAL 148
G AL
Sbjct: 118 LGPAL 122
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 35.7 bits (81), Expect = 0.013
Identities = 20/147 (13%), Positives = 39/147 (26%), Gaps = 17/147 (11%)
Query: 83 KTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESA------MKTAKAEGL 136
+ + +D+GCG G ++ K + ++ I+ + MK +
Sbjct: 29 RQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEY 88
Query: 137 LDKVNFLHGDAL------NLPFDNDSFDGGWFFESIFHMNHS-----AALNEARRVLKSG 185
+ F+ D+ FD + S L A L G
Sbjct: 89 IFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPG 148
Query: 186 SILTLTDLPLLSVSKNDNKFKEYVKKN 212
T + + + N
Sbjct: 149 GYFIGTTPNSFELIRRLEASETESFGN 175
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 35.0 bits (80), Expect = 0.020
Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 12/117 (10%)
Query: 79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRV---DGITISKFQQESAMKTAKAEG 135
+ N+ + K + +D+G G G+ + AKA +V + +IS + K KA
Sbjct: 58 MFHNR-HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAV----KIVKANK 112
Query: 136 LLDKVNFLHGDALNLPFDNDSFDG---GWFFESIFHMNHSAALNEAR-RVLKSGSIL 188
L V + G + + D W +F+ + + AR + L ++
Sbjct: 113 LDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLI 169
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 34.7 bits (79), Expect = 0.023
Identities = 25/201 (12%), Positives = 61/201 (30%), Gaps = 13/201 (6%)
Query: 27 KGNKGKKTVATLYDSPEGQIGSVLFGGHMHWGY--WDESNSKDNFAQGSDKLSRIMINKT 84
+ G +AT P ++ + Y W+ SK A K + +
Sbjct: 20 ELEDGSLRIATKNLVPGQRVYGERIFRYNGEEYREWNAYRSK--LAAALLK----GLIEL 73
Query: 85 SITKGQRFIDIGCGFGLSGIRLAKAKGC--RVDGITISKFQQESAMKTAKAEGLLDKVNF 142
+ +G R + +G G + ++ G R+ G+ + + + + +
Sbjct: 74 PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILG 133
Query: 143 LHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKND 202
+ D G + + + + AR L+ G + + +
Sbjct: 134 DARFPEKYRHLVEGVD-GLYADVAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTE 192
Query: 203 NK--FKEYVKKNIHSNFILVE 221
+K +K + + +
Sbjct: 193 PSEVYKREIKTLMDGGLEIKD 213
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 33.9 bits (78), Expect = 0.036
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFL 143
+ + ++ +D+G G S + LA A RV + E + K++
Sbjct: 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLR 126
Query: 144 HGDAL 148
AL
Sbjct: 127 LKPAL 131
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1,
S-adenosyl-L-methionine, tRNA Pro structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.55A
{Homo sapiens}
Length = 235
Score = 33.9 bits (78), Expect = 0.038
Identities = 26/123 (21%), Positives = 38/123 (30%), Gaps = 25/123 (20%)
Query: 92 FIDIGCGFGLSGIRLAKAK------GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG 145
F DIGCG+G + L+ G + Q A G + L
Sbjct: 50 FADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRS 109
Query: 146 DALN-LP--FDNDSFDGGWFFESIF--------H----MNHSAALNEARRVLKSGSILTL 190
+A+ LP F +F F + L E VL+ G ++
Sbjct: 110 NAMKHLPNFFYKGQLTKMFFL---FPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYT 166
Query: 191 -TD 192
TD
Sbjct: 167 ITD 169
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine,
phosphorylation, M7G, spout MT, tRNA processing; HET:
SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Length = 246
Score = 33.9 bits (78), Expect = 0.039
Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 27/126 (21%)
Query: 91 RFIDIGCGFGLSGIRLAKAK------GC--RVDGITISKFQQESAMKTAKAEGLLDKVNF 142
DIGCGFG I L+ A G RV + + + ++ +N
Sbjct: 52 TIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINV 111
Query: 143 LHGDALN-LP--FDNDSFDGGWFFESIF--------H----MNHSAALNEARRVLKSGSI 187
L G+A+ LP F+ +F F + + L+E VLK G +
Sbjct: 112 LRGNAMKFLPNFFEKGQLSKMFFC---FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGV 168
Query: 188 LTL-TD 192
+ TD
Sbjct: 169 VYTITD 174
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 33.2 bits (76), Expect = 0.044
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 13/71 (18%)
Query: 88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA 147
+ + +D+G G+ I K V ++ A+++ + N + D
Sbjct: 23 EMKIVLDLGTSTGV--ITEQLRKRNTVVSTDLN----IRALESHR------GGNLVRADL 70
Query: 148 LNLPFDNDSFD 158
L + +S D
Sbjct: 71 LC-SINQESVD 80
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center
for eukaryotic structural genomics, CESG, structural
genomics; 2.79A {Cyanidioschyzon merolae}
Length = 281
Score = 33.7 bits (76), Expect = 0.060
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 17/90 (18%)
Query: 32 KKTVATLYDSPEGQIGSV-----LFGGHMHWGY--WDESNSKDNFAQGSDKLSRIMINKT 84
+++ Y SP G H W W G+ L+ + +
Sbjct: 26 QRSRVERYQSPAGAPLQCSVQVQTTQEHPLWTSHVWS----------GARALADTLCWQP 75
Query: 85 SITKGQRFIDIGCGFGLSGIRLAKAKGCRV 114
+ G+ ++G G GL I A +V
Sbjct: 76 ELIAGKTVCELGAGAGLVSIVAFLAGADQV 105
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 32.3 bits (73), Expect = 0.12
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 8/85 (9%)
Query: 69 FAQGSDKLSRIMIN--KTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQES 126
+ + + +I G+ ID G G G+ V I
Sbjct: 30 YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDID----PD 85
Query: 127 AMKTAKAEGLLDKVNFLHGDALNLP 151
A++TAK VNF+ D +
Sbjct: 86 AIETAKRN--CGGVNFMVADVSEIS 108
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 32.3 bits (74), Expect = 0.16
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG 145
+ G + +D+G G G+ I A+ G + G+ I A AK G+ + L G
Sbjct: 118 LRPGDKVLDLGTGSGVLAI-AAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRF--LEG 174
Query: 146 DALNL----PFD 153
PFD
Sbjct: 175 SLEAALPFGPFD 186
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine,
virion, membrane, flavivirus, N7-methyltransferase,
2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus}
PDB: 2wa1_A*
Length = 276
Score = 31.1 bits (70), Expect = 0.35
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 62 ESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFG-LSGIRLAKAKGCRVDGITIS 120
++N+ ++G+ KL + + + +D+GCG G S ++ V T+
Sbjct: 57 KTNTGHAVSRGTAKL-AWIDERGGVELKGTVVDLGCGRGSWSYYAASQPNVREVKAYTLG 115
Query: 121 KFQQESAMK 129
E
Sbjct: 116 TSGHEKPRL 124
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich,
S-adenosylmeth dependent, structural genomics, PSI;
2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Length = 214
Score = 30.7 bits (70), Expect = 0.40
Identities = 19/122 (15%), Positives = 39/122 (31%), Gaps = 32/122 (26%)
Query: 93 IDIGCGFGLSGIRLAKAK------GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD 146
+++G G G +AK G + +S A+ G + + L D
Sbjct: 46 VEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSY-----ALDKVLEVG-VPNIKLLWVD 99
Query: 147 ALNLP--FDNDSFDGGWFFESIFH-------------MNHSAALNEARRVLKSGSILTL- 190
+L F++ D + + + + L+ +R+L +
Sbjct: 100 GSDLTDYFEDGEIDRLY----LNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 155
Query: 191 TD 192
TD
Sbjct: 156 TD 157
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis}
SCOP: c.66.1.53
Length = 213
Score = 30.7 bits (70), Expect = 0.44
Identities = 22/122 (18%), Positives = 37/122 (30%), Gaps = 32/122 (26%)
Query: 93 IDIGCGFGLSGIRLAKAK------GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD 146
I++G G G +AK G + I A++ K V L+ D
Sbjct: 43 IEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVT-----AVQKVKDSE-AQNVKLLNID 96
Query: 147 ALNLP--FDNDSFDGGWFFESIFH-------------MNHSAALNEARRVLKSGSILTL- 190
A L F+ + + + +S L + V+ G +
Sbjct: 97 ADTLTDVFEPGEVKRVY----LNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 152
Query: 191 TD 192
TD
Sbjct: 153 TD 154
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 30.8 bits (70), Expect = 0.50
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEG 135
++ I I+K ++ +++G G G ++L + K +V + K +
Sbjct: 17 INSI-IDKAALRPTDVVLEVGPGTGNMTVKLLE-KAKKVVACELDPRLVAELHKRVQGTP 74
Query: 136 LLDKVNFLHGDALNLPF 152
+ K+ L GD L
Sbjct: 75 VASKLQVLVGDVLKTDL 91
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold
methyltransferase, tRNA modification,
S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A
{Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Length = 218
Score = 30.3 bits (69), Expect = 0.63
Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 21/118 (17%)
Query: 92 FIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL 150
++IG G G S + +AK GI + + + +A EG L + + DA+ +
Sbjct: 38 TLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEG-LSNLRVMCHDAVEV 96
Query: 151 ---PFDNDSFDGGWFFESIF--------H----MNHSAALNEARRVLKSGSILTL-TD 192
++S F F H + + L+ G + + TD
Sbjct: 97 LHKMIPDNSLRMVQLF---FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 30.1 bits (68), Expect = 0.72
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 6/30 (20%)
Query: 92 FIDIGCGFGLSGIRLAK---AKGCRVDGIT 118
I GCG G+ LA+ A+G V G+
Sbjct: 7 LI-AGCGD--LGLELARRLTAQGHEVTGLR 33
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 30.2 bits (69), Expect = 0.80
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 86 ITKGQRFIDIGCGFGLS--GIRLAKAKGCRVDGITISKFQQESAMK 129
+ G G GL ++ AKA G RV GI + ++E
Sbjct: 167 LMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS 212
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 30.0 bits (68), Expect = 0.92
Identities = 4/38 (10%), Positives = 11/38 (28%)
Query: 98 GFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEG 135
G ++ K + + + + + K G
Sbjct: 179 AVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELG 216
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET:
SAM; 2.00A {Escherichia coli}
Length = 200
Score = 29.4 bits (65), Expect = 1.2
Identities = 8/83 (9%), Positives = 26/83 (31%), Gaps = 4/83 (4%)
Query: 88 KGQRFIDIGCGFG-LSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD 146
+D GCGF L+ + + + I + + + + +
Sbjct: 49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKT--TIKYRFLN 106
Query: 147 ALNLPFDNDSFDGGWFFESIFHM 169
+ + ++D + + + +
Sbjct: 107 KESDVYK-GTYDVVFLLKMLPVL 128
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 29.5 bits (67), Expect = 1.3
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 98 GFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL 136
G ++ I++AK G RV I + S K +A+ L
Sbjct: 178 GVSVAAIQIAKLFGARV--IATAG----SEDKLRRAKAL 210
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 29.1 bits (66), Expect = 1.3
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 4/22 (18%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLA 107
+ K D+G G SGI LA
Sbjct: 58 MVKPLTVADVGTG---SGI-LA 75
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral
enzyme structure; HET: SFG; 1.90A {Wesselsbron virus}
PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Length = 300
Score = 29.5 bits (66), Expect = 1.4
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 66 KDNFAQGSDKLSRI------MINKTSITKGQRFIDIGCGFG-LSGIRLAKAKGCRVDGIT 118
K+ +SR + + + R +D+GCG G S A+ + V G T
Sbjct: 53 KEGRTDVGISVSRGAAKIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYT 112
Query: 119 ISKFQQESAMKTA 131
+ E +
Sbjct: 113 LGIEGHEKPIHMQ 125
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 29.2 bits (66), Expect = 1.8
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 98 GFGLSGIRLAKAKGCRVDGI 117
G G ++L+K C V G
Sbjct: 175 GTGQFAMQLSKKAKCHVIGT 194
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA
capping, S-adenosyl-L-methionine, viral protein; HET:
SAM; 2.90A {Meaban virus}
Length = 265
Score = 28.8 bits (64), Expect = 1.9
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 72 GSDKLSRIMINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMK 129
G+ KL M + + R +D+GCG G S ++ V T+ E
Sbjct: 59 GTAKL-AWMEERGYVELTGRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVGGHEVPRI 116
>2px2_A Genome polyprotein [contains: capsid protein C (core protein);
envelope protein M...; methyltransferase, SAH; HET: SAH;
2.00A {Murray valley encephalitis virus} PDB: 2px4_A*
2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Length = 269
Score = 28.8 bits (64), Expect = 1.9
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 62 ESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITIS 120
++G+ KL R ++ + + + +D+GCG G S V G T
Sbjct: 48 NKVGGHPVSRGTAKL-RWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKG 106
Query: 121 KFQQESAM 128
E M
Sbjct: 107 GPGHEEPM 114
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA
methyltransferase, translation, cytoplasm, rRNA
processing; HET: HIC SAM AMP; 1.50A {Thermus
thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Length = 249
Score = 28.6 bits (64), Expect = 2.1
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 86 ITKGQRFIDIGCGFGLSGIRLA 107
R +D+G G G G+ L
Sbjct: 78 WQGPLRVLDLGTGAGFPGLPLK 99
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Escherichia coli} SCOP: c.66.1.20
Length = 207
Score = 27.6 bits (62), Expect = 3.7
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 88 KGQRFIDIGCGFGLSGIRLA 107
+G+RFID+G G GL GI L+
Sbjct: 65 QGERFIDVGTGPGLPGIPLS 84
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 28.0 bits (63), Expect = 3.8
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 98 GFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEG 135
G G + I++A A G R + + + K+ G
Sbjct: 179 GVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLG 216
>3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu
genomics, center for structural genomics of infectious
DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp}
Length = 359
Score = 27.7 bits (61), Expect = 4.6
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 244 VMPLLVPKLT--EATLTYKKEIYKSIPNPEKSIDNWLYLFKYMSKNLGY 290
+MP L+P L E YK I K+ + + L+ Y K L
Sbjct: 59 IMPNLIPPLCNLEDLKAYKMRILKACKDENFTPLMTLFFKNYDEKFLYS 107
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 27.6 bits (62), Expect = 4.8
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 98 GFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL 136
G L G+++AKA G V I S S K +A L
Sbjct: 200 GVALFGLQIAKATGAEV--IVTSS----SREKLDRAFAL 232
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 27.5 bits (62), Expect = 5.1
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 202 DNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKID 238
DN ++ ++ + L DL + S IK D
Sbjct: 31 DN-LSSGRREFVNPSAELHVR--DLKDYSWGAGIKGD 64
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis,
metal-binding, NADP, oxidoreductase, zinc; 2.0A
{Arabidopsis thaliana} PDB: 2cf6_A*
Length = 357
Score = 27.6 bits (62), Expect = 6.0
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 95 IGCGFGLS--GIRLAKAKGCRVDGITISKFQQESAMK 129
+G G G+ G+++AKA G V I+ S ++E A++
Sbjct: 187 LGLG-GVGHMGVKIAKAMGHHVTVISSSNKKREEALQ 222
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto
reductase; rossmann fold, riken structural
genomics/proteomics initiative, RSGI; 2.00A {Cavia
porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A*
2dm6_A* 1zsv_A 2y05_A*
Length = 333
Score = 27.1 bits (61), Expect = 6.3
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 106 LAKAKGCRVDGI 117
+AK KGC+V G
Sbjct: 165 IAKLKGCKVVGA 176
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor,
P nucleotide-binding, RNA replication, viral protein;
HET: SFG; 2.00A {West nile virus}
Length = 321
Score = 27.2 bits (60), Expect = 6.5
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 62 ESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITIS 120
++G+ KL R ++ + + + ID+GCG G + + V G T
Sbjct: 69 NVTGGHPVSRGTAKL-RWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKG 127
Query: 121 KFQQESAM 128
E
Sbjct: 128 GPGHEEPQ 135
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer;
2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 3pii_A
Length = 339
Score = 27.1 bits (61), Expect = 6.5
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 81 INKTSITKGQRFIDIGCGFGL--SGIRLAKAKGCRVDGITISKFQQESAMK 129
+ T G+ G G GL ++ AKA G V + I + E A +
Sbjct: 157 LKVTGAKPGEWVAIYGIG-GLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE 206
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase
(AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB:
2j3i_A* 2j3j_A* 2j3k_A*
Length = 345
Score = 27.1 bits (61), Expect = 6.8
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 106 LAKAKGCRVDGI 117
LAK GC V G
Sbjct: 175 LAKMMGCYVVGS 186
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX,
oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha}
PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Length = 340
Score = 27.1 bits (61), Expect = 6.9
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 83 KTSITKGQRFIDIGCGFGL--SGIRLAKAKGCRVDGITISKFQQESAMK 129
T GQ + G G GL ++ A+A G RV + I + A +
Sbjct: 161 VTDTRPGQWVVISGIG-GLGHVAVQYARAMGLRVAAVDIDDAKLNLARR 208
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral
enzyme STR ATP-binding, nucleotide-binding, RNA
replication, structura genomics; HET: SAM; 1.70A {Yokose
virus}
Length = 282
Score = 26.9 bits (59), Expect = 7.5
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 72 GSDKLSRIMINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAM 128
GS KL R M + + +D+GCG G S + +V T+ E +
Sbjct: 75 GSAKL-RWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPI 131
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative,
structural genomics, methyltransferase fold, PSI; 1.60A
{Bacillus subtilis} SCOP: c.66.1.20
Length = 240
Score = 26.9 bits (60), Expect = 7.9
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 88 KGQRFIDIGCGFGLSGIRLA 107
+ D+G G G + +
Sbjct: 70 QVNTICDVGAGAGFPSLPIK 89
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis;
1.98A {Coxiella burnetii}
Length = 255
Score = 26.7 bits (60), Expect = 8.9
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 5/79 (6%)
Query: 76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEG 135
L +I ++ K ++IG G G L + + + I + + K
Sbjct: 18 LQKI-VSAIHPQKTDTLVEIGPGRGALTDYLLT-ECDNLALVEIDR---DLVAFLQKKYN 72
Query: 136 LLDKVNFLHGDALNLPFDN 154
+ DAL F +
Sbjct: 73 QQKNITIYQNDALQFDFSS 91
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 27.0 bits (59), Expect = 9.0
Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 16/83 (19%)
Query: 129 KTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSIL 188
K+ AE L +N + L S V S+
Sbjct: 37 KSTIAEELCQIINEKYHTFL----------------SEHPNVIEVNDRLKPMVNLVDSLK 80
Query: 189 TLTDLPLLSVSKNDNKFKEYVKK 211
TL + + +N FK++V+
Sbjct: 81 TLQPNKVAEMIENQGLFKDHVED 103
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase,
zinc-dependent, plant DE biosynthesis, substrate
inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB:
1yqx_A*
Length = 366
Score = 26.8 bits (60), Expect = 9.4
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 95 IGCGFGLS--GIRLAKAKGCRVDGITISKFQQESAMK 129
+G G GL ++ AKA G +V I+ S ++E A+K
Sbjct: 194 VGLG-GLGHVAVKFAKAFGSKVTVISTSPSKKEEALK 229
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in
replication, dengue virus methyltransferase, structural
genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP:
c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A*
2p3l_A* 1r6a_A*
Length = 305
Score = 26.9 bits (59), Expect = 9.5
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 72 GSDKLSRIMINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAM 128
GS KL R + + +T + +D+GCG G S V G+T E +
Sbjct: 67 GSAKL-RWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPI 123
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK;
oxidoreductase, zinc binding, oxydoreductase,
metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2
c.2.1.1
Length = 369
Score = 26.8 bits (60), Expect = 10.0
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 95 IGCGFGLS--GIRLAKAKGCRVDGITISKFQQESAMK 129
+G G GL GI+LA A G V T S+ ++E+A
Sbjct: 201 VGIG-GLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA 236
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.395
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,468,841
Number of extensions: 262855
Number of successful extensions: 1064
Number of sequences better than 10.0: 1
Number of HSP's gapped: 919
Number of HSP's successfully gapped: 199
Length of query: 298
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 205
Effective length of database: 4,105,140
Effective search space: 841553700
Effective search space used: 841553700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.2 bits)