BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy241
(753 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P4L|A Chain A, Crystal Structure Of A Hemojuvelin-Binding Fragment Of
Neogenin
Length = 211
Score = 165 bits (417), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 126/201 (62%), Gaps = 5/201 (2%)
Query: 448 LIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINA 507
++PP+G+++ +LS ++RI+W D +LP Q + R+Y VR+ + A N +YK NA
Sbjct: 5 MMPPVGVQASILSHDTIRITWADNSLPKH--QKITDSRYYTVRWKTNIPA-NTKYKNANA 61
Query: 508 NITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDP 567
S + L+P+T YEF+V V + ++ S WSM TT E P S P+D+TVVSKEG P
Sbjct: 62 TTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKP 121
Query: 568 SLVNLNWQPPKSANGQISGYTILYSSDPNTD--QWIEESVVGDKMSTNVRGLEPGRIYYF 625
+ +NWQPP ANG+I+GY I YS+D N + W+ E VVG++++ ++ L YYF
Sbjct: 122 KTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYF 181
Query: 626 KIKARNSAGSSPYSSTVTWTT 646
KI+ARNS G P S V + T
Sbjct: 182 KIQARNSKGMGPMSEAVQFRT 202
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 20/192 (10%)
Query: 156 PPLNVNIPVVGTSSLLVTWEKPTV-TNGEIKHYTLYYLEEDTSV-----ERHVVTPQLSY 209
PP+ V ++ ++ +TW ++ + +I Y + T++ ++ LSY
Sbjct: 7 PPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSY 66
Query: 210 ELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPAN-----------SITV 258
+TGL TLY V+ G + T S T P+ PP + +I V
Sbjct: 67 LVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIV 126
Query: 259 RWQPPSRRGQNGIITGYKLRYXXXXXXXXXGETVT-TAGDRRLYVITGLNKSTTYQIKLW 317
WQPPS NG ITGY + Y + G+R + I L T Y K+
Sbjct: 127 NWQPPSE--ANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQ 184
Query: 318 AMNVNGSGPATD 329
A N G GP ++
Sbjct: 185 ARNSKGMGPMSE 196
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 21/200 (10%)
Query: 60 PQSVSAIMVGPRSVALRWLPPTLPRGEILV----YCVLYKREGSERERAYNATAR-VEAI 114
P V A ++ ++ + W +LP+ + + Y V +K + NA A + +
Sbjct: 8 PVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYL 67
Query: 115 IQGLHPNTSYTFRVVAYNXXXXXXXXXXXPVKTEPEDHVP-SPPLNVNIPVVGT----SS 169
+ GL PNT Y F V+ T + VP SPP +V VV +
Sbjct: 68 VTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTT--FELVPTSPPKDVT--VVSKEGKPKT 123
Query: 170 LLVTWEKPTVTNGEIKHYTLYYLEEDTSVERH------VVTPQLSYELTGLSHFTLYSIW 223
++V W+ P+ NG+I Y +YY D + E H VV +L++++ L+ T Y
Sbjct: 124 IIVNWQPPSEANGKITGYIIYY-STDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFK 182
Query: 224 VVAHNGNGAGTTSQELSVQT 243
+ A N G G S+ + +T
Sbjct: 183 IQARNSKGMGPMSEAVQFRT 202
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Query: 301 YVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPS 360
Y++TGL +T Y+ + M G +T +A + +L T P ++ ++ G P
Sbjct: 66 YLVTGLKPNTLYEFSV--MVTKGRRSSTWSMTAHGTTFELVP-TSPPKDVTVVSKEGKPK 122
Query: 361 SIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILD--VKQR-SDEITGLEPNSDYVIS 417
+IIV+W PP++ + + G+ + + V E +++ V R + +I L ++ Y
Sbjct: 123 TIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFK 182
Query: 418 LRAFNEMGDGP 428
++A N G GP
Sbjct: 183 IQARNSKGMGP 193
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 42 TSTGSIEAINETLTL--PSAPQSVSAIMV--GPRSVALRWLPPTLPRGEILVYCVLYKRE 97
+ST S+ A T L S P+ V+ + P+++ + W PP+ G+I Y + Y +
Sbjct: 89 SSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTD 148
Query: 98 GSERERAY----NATARVEAIIQGLHPNTSYTFRVVAYN 132
+ + R+ IQ L +T Y F++ A N
Sbjct: 149 VNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARN 187
>pdb|1X5I|A Chain A, The Solution Structure Of The Fourth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 126
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 80/114 (70%), Gaps = 2/114 (1%)
Query: 324 SGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGW 383
SGPATDW SAETF DL E VP++P+SL RP +SI+VSWTPP +Q+I+VRG+ +G+
Sbjct: 6 SGPATDWLSAETFESDLDETRVPEVPSSLHVRP-LVTSIVVSWTPPENQNIVVRGYAIGY 64
Query: 384 GKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTR 437
G G P ++ D KQR I L+P+S YVI+L+AFN +G+G YES TR
Sbjct: 65 GIGSPHAQTIKV-DYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTR 117
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 251 PPANSITVRWQPPSRRGQNGIITGYKLRYXXXXXXXXXGETVTTAGDRRLYVITGLNKST 310
P SI V W PP QN ++ GY + Y +T+ +R Y I L+ S+
Sbjct: 38 PLVTSIVVSWTPP--ENQNIVVRGYAIGYGIGSPH---AQTIKVDYKQRYYTIENLDPSS 92
Query: 311 TYQIKLWAMNVNGSG 325
Y I L A N G G
Sbjct: 93 HYVITLKAFNNVGEG 107
>pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Neogenin
Length = 132
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 76/127 (59%), Gaps = 10/127 (7%)
Query: 231 GAGTTSQELSVQTLSDKPSEPPAN---------SITVRWQPPSRRGQNGIITGYKLRYXX 281
G+ +S +++V+TLSD PS P N SI + WQPP+ QNG ITGYK+RY
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRK 60
Query: 282 XXXXXXXGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLG 341
ET+ + G + +I GL++ T Y ++ A+ +NG+GPATDW SAETF DL
Sbjct: 61 ASRKSDVTETLVS-GTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLD 119
Query: 342 EFTVPDI 348
E VP++
Sbjct: 120 ETRVPEV 126
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 551 PASAPRDLTVVSKEGDPSLVNLNWQPPKSA--NGQISGYTILYSSDPNTDQWIEESVVGD 608
P++AP++L++ + + + ++WQPP A NGQI+GY I Y E V G
Sbjct: 18 PSAAPQNLSLEVR--NSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGT 75
Query: 609 KMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTT-ASDMQE 652
++S + GL+ G Y F++ A G+ P + ++ T SD+ E
Sbjct: 76 QLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDE 120
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 153 VPSP-PLNVNIPVVGTSSLLVTWE--KPTVTNGEIKHYTLYYLE---EDTSVERHVVTPQ 206
VPS P N+++ V + S+++ W+ P NG+I Y + Y + + E V Q
Sbjct: 17 VPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQ 76
Query: 207 LSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTL 244
LS + GL T Y+ V A NG G + LS +T
Sbjct: 77 LSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETF 114
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 58 SAPQSVSAIMVGPRSVALRWLP--PTLPRGEILVYCVLYKR--EGSERERAYNATARVEA 113
+APQ++S + +S+ + W P P G+I Y + Y++ S+ + ++
Sbjct: 20 AAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQ 79
Query: 114 IIQGLHPNTSYTFRVVA 130
+I+GL T Y FRV A
Sbjct: 80 LIEGLDRGTEYNFRVAA 96
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 337 SQDLGEFTVPDIPA------SLKARPGGPSSIIVSWTP--PADQSIMVRGFTLGWGKGV- 387
S D+ T+ D+P+ SL+ R SI++ W P PA Q+ + G+ + + K
Sbjct: 6 SGDVAVRTLSDVPSAAPQNLSLEVR--NSKSIMIHWQPPAPATQNGQITGYKIRYRKASR 63
Query: 388 PDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGP 428
+ + ++ Q S I GL+ ++Y + A G GP
Sbjct: 64 KSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGP 104
>pdb|1X5K|A Chain A, The Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 124
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 68/104 (65%), Gaps = 2/104 (1%)
Query: 545 TTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTD--QWIE 602
TT E P S P+D+TVVSKEG P + +NWQPP ANG+I+GY I YS+D N + W+
Sbjct: 12 TTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVI 71
Query: 603 ESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTT 646
E VVG++++ ++ L YYFKI+ARNS G P S V + T
Sbjct: 72 EPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRT 115
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 169 SLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERH------VVTPQLSYELTGLSHFTLYSI 222
+++V W+ P+ NG+I Y +YY D + E H VV +L++++ L+ T Y
Sbjct: 36 TIIVNWQPPSEANGKITGYIIYY-STDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYF 94
Query: 223 WVVAHNGNGAGTTSQELSVQT 243
+ A N G G S+ + +T
Sbjct: 95 KIQARNSKGMGPMSEAVQFRT 115
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 237 QELSVQTLSDKPSEPPANSITVRWQPPSRRGQNGIITGYKLRYXXXXXXXXXGETVT-TA 295
++++V + KP +I V WQPPS NG ITGY + Y +
Sbjct: 23 KDVTVVSKEGKP-----KTIIVNWQPPSE--ANGKITGYIIYYSTDVNAEIHDWVIEPVV 75
Query: 296 GDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATD 329
G+R + I L T Y K+ A N G GP ++
Sbjct: 76 GNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSE 109
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILD--VKQR 401
T P ++ ++ G P +IIV+W PP++ + + G+ + + V E +++ V R
Sbjct: 19 TSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNR 78
Query: 402 -SDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTR 437
+ +I L ++ Y ++A N G GP E+++ R
Sbjct: 79 LTHQIQELTLDTPYYFKIQARNSKGMGPMS-EAVQFR 114
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 43 STGSIEAINETLTLPSAPQSVSAIMV--GPRSVALRWLPPTLPRGEILVYCVLYKREGSE 100
S+G+ L S P+ V+ + P+++ + W PP+ G+I Y + Y + +
Sbjct: 5 SSGTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNA 64
Query: 101 RERAY----NATARVEAIIQGLHPNTSYTFRVVAYN 132
+ R+ IQ L +T Y F++ A N
Sbjct: 65 EIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARN 100
>pdb|2EDE|A Chain A, Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 114
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 64/98 (65%), Gaps = 2/98 (2%)
Query: 551 PASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPN--TDQWIEESVVGD 608
P SAP+DLTV+++EG P V ++WQPP ANG+I+ Y + Y+ D N D WI E++ GD
Sbjct: 8 PTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGD 67
Query: 609 KMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTT 646
+++ + L +YYF+I+ARNS G P S + + T
Sbjct: 68 RLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRT 105
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 237 QELSVQTLSDKPSEPPANSITVRWQPPSRRGQNGIITGYKLRYXXXXXXXXXGETV-TTA 295
++L+V T KP ++ V WQPP NG IT Y L Y + T +
Sbjct: 13 KDLTVITREGKP-----RAVIVSWQPPLE--ANGKITAYILFYTLDKNIPIDDWIMETIS 65
Query: 296 GDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATD 329
GDR + I LN T Y ++ A N G GP +D
Sbjct: 66 GDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSD 99
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 169 SLLVTWEKPTVTNGEIKHYTLYY-LEEDTSVERHVVT----PQLSYELTGLSHFTLYSIW 223
+++V+W+ P NG+I Y L+Y L+++ ++ ++ +L++++ L+ T+Y
Sbjct: 26 AVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMYYFR 85
Query: 224 VVAHNGNGAGTTSQELSVQTL 244
+ A N G G S + +TL
Sbjct: 86 IQARNSKGVGPLSDPILFRTL 106
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 355 RPGGPSSIIVSWTPPADQSIMVRGFTLGW--GKGVP-DEFVKQILDVKQRSDEITGLEPN 411
R G P ++IVSW PP + + + + L + K +P D+++ + + + + +I L +
Sbjct: 20 REGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLD 79
Query: 412 SDYVISLRAFNEMGDGP 428
+ Y ++A N G GP
Sbjct: 80 TMYYFRIQARNSKGVGP 96
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 58 SAPQSVSAIMV--GPRSVALRWLPPTLPRGEILVYCVLYKREGS----ERERAYNATARV 111
SAP+ ++ I PR+V + W PP G+I Y + Y + + + + R+
Sbjct: 10 SAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDRL 69
Query: 112 EAIIQGLHPNTSYTFRVVAYN 132
I L+ +T Y FR+ A N
Sbjct: 70 THQIMDLNLDTMYYFRIQARN 90
>pdb|2EDB|A Chain A, Solution Structure Of The Fourth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 116
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 66/101 (65%), Gaps = 4/101 (3%)
Query: 339 DLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVP-DEFVKQILD 397
DL E VPD P+SL RP + II+SWTPP + +I+VRG+ +G+G G P E V+ +D
Sbjct: 11 DLDESQVPDQPSSLHVRPQ-TNCIIMSWTPPLNPNIVVRGYIIGYGVGSPYAETVR--VD 67
Query: 398 VKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRN 438
KQR I LE +S YVISL+AFN G+G YES TR+
Sbjct: 68 SKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATTRS 108
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 9/100 (9%)
Query: 230 NGAGTTSQELSVQTLSDKPS----EPPANSITVRWQPPSRRGQNGIITGYKLRYXXXXXX 285
+G+ +L + D+PS P N I + W PP N ++ GY + Y
Sbjct: 3 SGSSGPENDLDESQVPDQPSSLHVRPQTNCIIMSWTPP--LNPNIVVRGYIIGYGVGSPY 60
Query: 286 XXXGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSG 325
ETV +R Y I L S+ Y I L A N G G
Sbjct: 61 ---AETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEG 97
>pdb|1X5G|A Chain A, The Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Neogenin
Length = 116
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 64/102 (62%)
Query: 145 VKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVT 204
V+T+PE +P P N+ +S+ VTWE P NGEI++Y LYY+E+ T E+ V
Sbjct: 9 VETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVDV 68
Query: 205 PQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSD 246
SY + GL +T YS VVA+N +G G ++ +++V+TLSD
Sbjct: 69 SSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSD 110
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 43 STGSIEAINETLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERE 102
S+G +E E + LP ++ A P S+ + W P GEI Y + Y +G+++E
Sbjct: 5 SSGRVETQPE-VQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKE 63
Query: 103 RAYNATARVEAIIQGLHPNTSYTFRVVAYN 132
+ + ++ I GL T Y+FRVVAYN
Sbjct: 64 QDVDVSSH-SYTINGLKKYTEYSFRVVAYN 92
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 342 EFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQR 401
E +P +L+A P+SI V+W P + ++ + L + + D+ +Q +DV
Sbjct: 14 EVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDK--EQDVDVSSH 71
Query: 402 SDEITGLEPNSDYVISLRAFNEMGDG 427
S I GL+ ++Y + A+N+ G G
Sbjct: 72 SYTINGLKKYTEYSFRVVAYNKHGPG 97
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 255 SITVRWQPPSRRGQNGIITGYKLRYXXXXXXXXXGETVTTAGDRRLYVITGLNKSTTYQI 314
SITV W+ P NG I YKL Y V++ Y I GL K T Y
Sbjct: 33 SITVTWETPVS--GNGEIQNYKLYYMEKGTDKEQDVDVSS----HSYTINGLKKYTEYSF 86
Query: 315 KLWAMNVNGSGPATDWFSAETFS 337
++ A N +G G +T + T S
Sbjct: 87 RVVAYNKHGPGVSTPDVAVRTLS 109
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 567 PSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFK 626
P+ + + W+ P S NG+I Y LY + TD+ E+ V S + GL+ Y F+
Sbjct: 31 PTSITVTWETPVSGNGEIQNYK-LYYMEKGTDK--EQDVDVSSHSYTINGLKKYTEYSFR 87
Query: 627 IKARNSAGSSPYSSTVTWTTASDMQEAGG 655
+ A N G + V T SD + G
Sbjct: 88 VVAYNKHGPGVSTPDVAVRTLSDSGPSSG 116
>pdb|2ED9|A Chain A, Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 124
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 64/114 (56%), Gaps = 12/114 (10%)
Query: 231 GAGTTSQELSVQTLSDKPSEPPAN---------SITVRWQPPSRRGQNGIITGYKLRYXX 281
G G ++ +++V TLSD PS PP N SI V W PP QNG ITGYK+R+
Sbjct: 11 GPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRK 70
Query: 282 XXXXXXXGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
GE T + Y+ TGL K + Y ++ AM VNG+GP ++W++AET
Sbjct: 71 TTRR---GEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAET 121
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 153 VPS-PPLNVNIPVVGTSSLLVTWEKP--TVTNGEIKHYTLYYLEEDTSVERHVVTP-QLS 208
VPS PP NV++ VV + S+ V+W P NG I Y + + + E + P L
Sbjct: 27 VPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEMETLEPNNLW 86
Query: 209 YELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQT 243
Y TGL + YS V A NG G S + +T
Sbjct: 87 YLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAET 121
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 56 LPSAP-QSVSAIMVGPRSVALRWLPP--TLPRGEILVYCVLYKREGSERERAYNATARVE 112
+PSAP Q+VS +V RS+ + WLPP G I Y + +++ E +
Sbjct: 27 VPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEMETLEPNNLW 86
Query: 113 AIIQGLHPNTSYTFRVVA 130
+ GL + Y+F+V A
Sbjct: 87 YLFTGLEKGSQYSFQVSA 104
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 21/114 (18%)
Query: 550 APASAPRDLTVVSKEGDPSL--------------VNLNWQPPKSA--NGQISGYTILYSS 593
P + D+TVV+ PS + ++W PP S NG I+GY I +
Sbjct: 11 GPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRK 70
Query: 594 DPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTA 647
T + E++ + + GLE G Y F++ A G+ P S+ W TA
Sbjct: 71 --TTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSN---WYTA 119
>pdb|2ED7|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 119
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 49 AINETLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNAT 108
AI + LPSAP+ V ++V R V L W PP +G I + V + REG RERA N T
Sbjct: 10 AIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRERALNTT 69
Query: 109 --ARVEAIIQGLHPNTSYTFRVVAYNXXXXXXXXXXXPVKTEPED 151
++ + L P YTFRVVAYN V T+PE
Sbjct: 70 QPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQPES 114
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 153 VPSPPLNVNIPVVGTSSLL-VTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQ---LS 208
+PS P +V +PV+ +S + ++W P G I+ +T+++ E + ER + T Q L
Sbjct: 17 LPSAPRDV-VPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRERALNTTQPGSLQ 75
Query: 209 YELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQT 243
+ L +Y+ VVA+N G G +SQ + V T
Sbjct: 76 LTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVAT 110
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 553 SAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMST 612
SAPRD+ V V L+W+PP A G I +T+ +S + + + + +
Sbjct: 19 SAPRDVVPVLVSSR--FVRLSWRPPAEAKGNIQTFTVFFSREGDNRERALNTTQPGSLQL 76
Query: 613 NVRGLEPGRIYYFKIKARNSAG 634
V L+P +Y F++ A N G
Sbjct: 77 TVGNLKPEAMYTFRVVAYNEWG 98
>pdb|1X5J|A Chain A, The Solution Structure Of The Fifth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 113
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 448 LIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINA 507
++PP+G+++ +LS ++RI+W D +LP Q + R+Y VR+ + A N +YK NA
Sbjct: 9 MMPPVGVQASILSHDTIRITWADNSLPKH--QKITDSRYYTVRWKTNIPA-NTKYKNANA 65
Query: 508 NITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQE-AAPASA 554
S + L+P+T YEF+V V + ++ S WSM TT E + P+S
Sbjct: 66 TTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSGPSSG 113
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 60 PQSVSAIMVGPRSVALRWLPPTLPRGEILV----YCVLYKREGSERERAYNATAR-VEAI 114
P V A ++ ++ + W +LP+ + + Y V +K + NA A + +
Sbjct: 12 PVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYL 71
Query: 115 IQGLHPNTSYTFRVV 129
+ GL PNT Y F V+
Sbjct: 72 VTGLKPNTLYEFSVM 86
>pdb|2ED8|A Chain A, Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 106
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 161 NIPVVGTS--SLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELTGLSHFT 218
N+ V TS S+L+TWE P NG ++ Y L+ E T E+++ LSY+L GL FT
Sbjct: 13 NLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIEVDGLSYKLEGLKKFT 72
Query: 219 LYSIWVVAHNGNGAGTTSQELSVQTLSD 246
YS+ +A+N G G ++ +++V TLSD
Sbjct: 73 EYSLRFLAYNRYGPGVSTDDITVVTLSD 100
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 567 PSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFK 626
P+ + + W+PP ANG + GY L+ ++ +T + E+++ D +S + GL+ Y +
Sbjct: 21 PTSILITWEPPAYANGPVQGYR-LFCTEVSTGK--EQNIEVDGLSYKLEGLKKFTEYSLR 77
Query: 627 IKARNSAGSSPYSSTVTWTTASD 649
A N G + +T T SD
Sbjct: 78 FLAYNRYGPGVSTDDITVVTLSD 100
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 240 SVQTLSDKPSEPPANSITVRWQPPSRRGQNGIITGYKLRYXXXXXXXXXGETVTTAGDRR 299
++Q +S P+ SI + W+PP+ NG + GY+L G+ D
Sbjct: 13 NLQAVSTSPT-----SILITWEPPAY--ANGPVQGYRL----FCTEVSTGKEQNIEVDGL 61
Query: 300 LYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFS 337
Y + GL K T Y ++ A N G G +TD + T S
Sbjct: 62 SYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLS 99
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 351 SLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEP 410
+L+A P+SI+++W PPA + V+G+ L + + +Q ++V S ++ GL+
Sbjct: 13 NLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGK--EQNIEVDGLSYKLEGLKK 70
Query: 411 NSDYVISLRAFNEMGDG 427
++Y + A+N G G
Sbjct: 71 FTEYSLRFLAYNRYGPG 87
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 61 QSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAIIQGLHP 120
+++ A+ P S+ + W PP G + Y + + +E+ + ++GL
Sbjct: 12 ENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIEVDG-LSYKLEGLKK 70
Query: 121 NTSYTFRVVAYN 132
T Y+ R +AYN
Sbjct: 71 FTEYSLRFLAYN 82
>pdb|2EDD|A Chain A, Solution Structure Of The Fifth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 123
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 448 LIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINA 507
++PP+G+++ L+ ++R+SW D ++P Q E R Y VR+ AS +YK +
Sbjct: 19 MLPPVGVQAVALTHDAVRVSWADNSVPKN--QKTSEVRLYTVRWRTSFSAS-AKYKSEDT 75
Query: 508 NITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAA 550
S L+P+T YEF+V V + ++ S WSM TT EA+
Sbjct: 76 TSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEAS 118
>pdb|1X5F|A Chain A, The Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Neogenin
Length = 120
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 56 LPSAPQSVSAIMVGPRSVALRW-LPPTLPRGEILVYCVLYKREGSERERAYNAT--ARVE 112
LPSAP+ V A +V R + L W P + P G+ L Y V Y +EG RER N + ++
Sbjct: 17 LPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQ 76
Query: 113 AIIQGLHPNTSYTFRVVAYNXXXXXXXXXXXPVKTEPE 150
IQ L P T Y FRV+A N V+T+PE
Sbjct: 77 VTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPE 114
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 544 NTTQEAAPA------SAPRDLTVVSKEGDPSLVNLNWQPPKS-ANGQISGYTILYSSDPN 596
++ E APA SAPRD VV+ + L W+ P S +G Y++ Y+ +
Sbjct: 4 GSSGEHAPATTGPLPSAPRD--VVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGI 61
Query: 597 TDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGS 635
+ +E + +M ++ L P +Y F++ A+N GS
Sbjct: 62 ARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGS 100
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVT-NGEIKHYTLYYLEEDTSVERHVVTP---QLS 208
+PS P +V +V T + +TW P +G+ Y+++Y +E + ER T ++
Sbjct: 17 LPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQ 76
Query: 209 YELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQT 243
+ L T+Y V+A N +G+G +S L V+T
Sbjct: 77 VTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVET 111
>pdb|1FNF|A Chain A, Fragment Of Human Fibronectin Encompassing Type-Iii
Repeats 7 Through 10
Length = 368
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 126/295 (42%), Gaps = 36/295 (12%)
Query: 349 PASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQI-LDVKQRSDEITG 407
P L+ GP ++ V+W PP SI + F + + +E V ++ + + +T
Sbjct: 98 PTDLRFTNIGPDTMRVTWAPPP--SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTN 155
Query: 408 LEPNSDYVISLRAFNEMGDGPQKYES--LRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMR 465
L P ++YV+S+ + E ++ES LR R + L P G+ ++ S
Sbjct: 156 LLPGTEYVVSVSSVYE------QHESTPLRGRQK------TGLDSPTGIDFSDITANSFT 203
Query: 466 ISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEF 525
+ WI + G RH+ + + PR + + S+ + +L P T+Y
Sbjct: 204 VHWI----APRATITGYRIRHHPEHF-----SGRPREDRVPHSRNSITLTNLTPGTEYVV 254
Query: 526 TVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQIS 585
++ + ++ES L Q++ + PRDL VV+ P+ + ++W P +
Sbjct: 255 SIVALNGREESP-----LLIGQQSTVSDVPRDLEVVA--ATPTSLLISWDAPAVT---VR 304
Query: 586 GYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSS 640
Y I Y E +V G K + + GL+PG Y + A G SP SS
Sbjct: 305 YYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASS 359
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 119/283 (42%), Gaps = 33/283 (11%)
Query: 156 PPLNVNIPVVGTSSLLVTWEKP---TVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELT 212
PP ++ +G ++ VTW P +TN ++ Y+ EED + E + + LT
Sbjct: 97 PPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVR-YSPVKNEEDVA-ELSISPSDNAVVLT 154
Query: 213 GLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKP-----SEPPANSITVRWQPPSRRG 267
L T Y + V + T + +T D P S+ ANS TV W P
Sbjct: 155 NLLPGTEYVVSVSSVYEQHESTPLRGRQ-KTGLDSPTGIDFSDITANSFTVHWIAP---- 209
Query: 268 QNGIITGYKLRYXXXXXXXXXGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPA 327
ITGY++R+ E R +T L T Y + + A+N P
Sbjct: 210 -RATITGYRIRHHPEHFSGRPRED-RVPHSRNSITLTNLTPGTEYVVSIVALNGREESPL 267
Query: 328 TDWFSAETFSQDLG-EFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKG 386
+G + TV D+P L+ P+S+++SW PA + VR + + +G+
Sbjct: 268 L-----------IGQQSTVSDVPRDLEVVAATPTSLLISWDAPA---VTVRYYRITYGET 313
Query: 387 VPDEFVKQILDVKQRSDE-ITGLEPNSDYVISLRAFNEMGDGP 428
+ V++ +S I+GL+P DY I++ A GD P
Sbjct: 314 GGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSP 356
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 19/179 (10%)
Query: 59 APQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKRE---GSERERAYNATARVEAII 115
+P + + S + W+ PR I Y + + E G RE +R +
Sbjct: 188 SPTGIDFSDITANSFTVHWI---APRATITGYRIRHHPEHFSGRPREDRV-PHSRNSITL 243
Query: 116 QGLHPNTSYTFRVVAYNXXXXXXXXXXXPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWE 175
L P T Y +VA N P+ + V P ++ + +SLL++W+
Sbjct: 244 TNLTPGTEYVVSIVALNGREES------PLLIGQQSTVSDVPRDLEVVAATPTSLLISWD 297
Query: 176 KPTVTNGEIKHYTLYYLEE--DTSVERHVVTPQLSYE-LTGLSHFTLYSIWVVAHNGNG 231
P VT +++Y + Y E ++ V+ V S ++GL Y+I V A G G
Sbjct: 298 APAVT---VRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRG 353
>pdb|2DLH|A Chain A, Solution Structure Of The Second Fn3 Domain Of Human
Receptor-Type Tyrosine-Protein Phosphatase Delta
Length = 121
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 542 VLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDP--NTDQ 599
VL T E AP+SAPRD V ++ + + + W+ P+ NGQI GY + Y+ DP + +
Sbjct: 9 VLTQTSEQAPSSAPRD--VQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNN 66
Query: 600 WIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTV 642
W++ +V D T + L P + Y K+ A S G P SS +
Sbjct: 67 WMKHNVA-DSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDI 108
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 144 PVKTEPEDHVPS-PPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTS----- 197
PV T+ + PS P +V ++ ++++LV W++P NG+I+ Y +YY + T
Sbjct: 8 PVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNW 67
Query: 198 VERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQT 243
++ +V Q++ + L YS+ V+A G G S ++ V T
Sbjct: 68 MKHNVADSQIT-TIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVIT 112
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 58 SAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERER---AYNATARVEAI 114
SAP+ V A M+ ++ ++W P P G+I Y V Y + ++ +N
Sbjct: 20 SAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQITT 79
Query: 115 IQGLHPNTSYTFRVVAY 131
I L P +Y+ +V+A+
Sbjct: 80 IGNLVPQKTYSVKVLAF 96
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 349 PASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDEIT-- 406
P ++AR ++I+V W P + + ++G+ + + P + V + +IT
Sbjct: 22 PRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMD-PTQHVNNWMKHNVADSQITTI 80
Query: 407 -GLEPNSDYVISLRAFNEMGDGP 428
L P Y + + AF +GDGP
Sbjct: 81 GNLVPQKTYSVKVLAFTSIGDGP 103
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 11/105 (10%)
Query: 231 GAGTTSQELSVQTLSDKPSEPP---------ANSITVRWQPPSRRGQNGIITGYKLRYXX 281
G+ +S + QT PS P + +I V+W+ P NG I GY++ Y
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEP--NGQIQGYRVYYTM 58
Query: 282 XXXXXXXGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGP 326
D ++ I L TY +K+ A G GP
Sbjct: 59 DPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGP 103
>pdb|3F7P|C Chain C, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|D Chain D, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|E Chain E, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 248
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 6/134 (4%)
Query: 59 APQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAI-IQG 117
APQ+ +A G R + WLPP+ G+ + Y V Y +G A+ ++V ++ +
Sbjct: 7 APQNPNAKAAGSRKIHFNWLPPS---GKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTN 63
Query: 118 LHPNTSYTFRVVAYNXXXXXXXXXXXPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKP 177
L+P Y +V AY +T E VPS P + VV ++ ++W +P
Sbjct: 64 LYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQE--VPSEPGRLAFNVVSSTVTQLSWAEP 121
Query: 178 TVTNGEIKHYTLYY 191
TNGEI Y + Y
Sbjct: 122 AETNGEITAYEVCY 135
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
Query: 487 YLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTT 546
Y V+Y + G S +++ + SV++ +L P YE V A+ E +S +V T
Sbjct: 35 YRVKY-WIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRT 93
Query: 547 QEAAPASAPR-DLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYS--SDPNTDQWIEE 603
+ P+ R VVS ++ L+W P NG+I+ Y + Y +D N +
Sbjct: 94 HQEVPSEPGRLAFNVVSS----TVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMK 149
Query: 604 SVVGDK------MSTNVRGLEPGRIYYFKIKARNSAGSSP 637
V+ D + N+R +P Y + +KARN AG P
Sbjct: 150 KVLVDNPKNRMLLIENLRESQP---YRYTVKARNGAGWGP 186
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 19/189 (10%)
Query: 152 HVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTL-YYLEEDTSVERHVVTPQL-SY 209
H P N N G+ + W P+ G+ Y + Y+++ D+ E H++ ++ S
Sbjct: 3 HDLGAPQNPNAKAAGSRKIHFNWLPPS---GKPMGYRVKYWIQGDSESEAHLLDSKVPSV 59
Query: 210 ELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPANSITV--------RWQ 261
ELT L + Y + V A+ G G S +S +T + PSEP + V W
Sbjct: 60 ELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWA 119
Query: 262 PPSRRGQNGIITGYKLRYXXXXXXXX----XGETVTTAGDRRLYVITGLNKSTTYQIKLW 317
P+ NG IT Y++ Y + + R+ +I L +S Y+ +
Sbjct: 120 EPAE--TNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVK 177
Query: 318 AMNVNGSGP 326
A N G GP
Sbjct: 178 ARNGAGWGP 186
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 83/205 (40%), Gaps = 40/205 (19%)
Query: 337 SQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQIL 396
S DLG P + A+ G I +W PP+ + + R W +G E +L
Sbjct: 2 SHDLG------APQNPNAKAAGSRKIHFNWLPPSGKPMGYR--VKYWIQG-DSESEAHLL 52
Query: 397 DVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESL---RTRNEPPPQAPKVLIPPMG 453
D K S E+T L P DY + + A+ G+GP Y SL RT E P + P
Sbjct: 53 DSKVPSVELTNLYPYCDYEMKVCAYGAQGEGP--YSSLVSCRTHQEVPSE-------PGR 103
Query: 454 LKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASN-------PRYKYI- 505
L V+S ++SW + + +GE + Y G N P K +
Sbjct: 104 LAFNVVSSTVTQLSWAEPA-----ETNGE-----ITAYEVCYGLVNDDNRPIGPMKKVLV 153
Query: 506 -NANITSVQINDLRPSTQYEFTVKV 529
N + I +LR S Y +TVK
Sbjct: 154 DNPKNRMLLIENLRESQPYRYTVKA 178
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 23/183 (12%)
Query: 256 ITVRWQPPSRRGQNGIITGYKLRYXXXXXXXXXGETVTTAGDRRL--YVITGLNKSTTYQ 313
I W PPS G GY+++Y + D ++ +T L Y+
Sbjct: 21 IHFNWLPPS-----GKPMGYRVKYWIQGDSESEAHLL----DSKVPSVELTNLYPYCDYE 71
Query: 314 IKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQS 373
+K+ A G GP + S T + VP P L + +SW PA+ +
Sbjct: 72 MKVCAYGAQGEGPYSSLVSCRTHQE------VPSEPGRLAFNVVSSTVTQLSWAEPAETN 125
Query: 374 IMVRGFTLGWG----KGVPDEFVKQIL--DVKQRSDEITGLEPNSDYVISLRAFNEMGDG 427
+ + + +G P +K++L + K R I L + Y +++A N G G
Sbjct: 126 GEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWG 185
Query: 428 PQK 430
P++
Sbjct: 186 PER 188
>pdb|3F7R|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 249
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 6/134 (4%)
Query: 59 APQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAI-IQG 117
APQ+ +A G R + WLPP+ G+ + Y V Y +G A+ ++V ++ +
Sbjct: 8 APQNPNAKAAGSRKIHFNWLPPS---GKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTN 64
Query: 118 LHPNTSYTFRVVAYNXXXXXXXXXXXPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKP 177
L+P Y +V AY +T E VPS P + VV ++ ++W +P
Sbjct: 65 LYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQE--VPSEPGRLAFNVVSSTVTQLSWAEP 122
Query: 178 TVTNGEIKHYTLYY 191
TNGEI Y + Y
Sbjct: 123 AETNGEITAYEVCY 136
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
Query: 487 YLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTT 546
Y V+Y + G S +++ + SV++ +L P YE V A+ E +S +V T
Sbjct: 36 YRVKY-WIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRT 94
Query: 547 QEAAPASAPR-DLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYS--SDPNTDQWIEE 603
+ P+ R VVS ++ L+W P NG+I+ Y + Y +D N +
Sbjct: 95 HQEVPSEPGRLAFNVVSS----TVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMK 150
Query: 604 SVVGDK------MSTNVRGLEPGRIYYFKIKARNSAGSSP 637
V+ D + N+R +P Y + +KARN AG P
Sbjct: 151 KVLVDNPKNRMLLIENLRESQP---YRYTVKARNGAGWGP 187
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 19/184 (10%)
Query: 157 PLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTL-YYLEEDTSVERHVVTPQL-SYELTGL 214
P N N G+ + W P+ G+ Y + Y+++ D+ E H++ ++ S ELT L
Sbjct: 9 PQNPNAKAAGSRKIHFNWLPPS---GKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNL 65
Query: 215 SHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPANSITV--------RWQPPSRR 266
+ Y + V A+ G G S +S +T + PSEP + V W P+
Sbjct: 66 YPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAE- 124
Query: 267 GQNGIITGYKLRYXXXXXXXX----XGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVN 322
NG IT Y++ Y + + R+ +I L +S Y+ + A N
Sbjct: 125 -TNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGA 183
Query: 323 GSGP 326
G GP
Sbjct: 184 GWGP 187
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 79/193 (40%), Gaps = 34/193 (17%)
Query: 349 PASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGL 408
P + A+ G I +W PP+ + + R W +G E +LD K S E+T L
Sbjct: 9 PQNPNAKAAGSRKIHFNWLPPSGKPMGYR--VKYWIQG-DSESEAHLLDSKVPSVELTNL 65
Query: 409 EPNSDYVISLRAFNEMGDGPQKYESL---RTRNEPPPQAPKVLIPPMGLKSEVLSPYSMR 465
P DY + + A+ G+GP Y SL RT E P + P L V+S +
Sbjct: 66 YPYCDYEMKVCAYGAQGEGP--YSSLVSCRTHQEVPSE-------PGRLAFNVVSSTVTQ 116
Query: 466 ISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASN-------PRYKYI--NANITSVQIND 516
+SW + + +GE + Y G N P K + N + I +
Sbjct: 117 LSWAEPA-----ETNGE-----ITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIEN 166
Query: 517 LRPSTQYEFTVKV 529
LR S Y +TVK
Sbjct: 167 LRESQPYRYTVKA 179
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 23/183 (12%)
Query: 256 ITVRWQPPSRRGQNGIITGYKLRYXXXXXXXXXGETVTTAGDRRL--YVITGLNKSTTYQ 313
I W PPS G GY+++Y + D ++ +T L Y+
Sbjct: 22 IHFNWLPPS-----GKPMGYRVKYWIQGDSESEAHLL----DSKVPSVELTNLYPYCDYE 72
Query: 314 IKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQS 373
+K+ A G GP + S T + VP P L + +SW PA+ +
Sbjct: 73 MKVCAYGAQGEGPYSSLVSCRTHQE------VPSEPGRLAFNVVSSTVTQLSWAEPAETN 126
Query: 374 IMVRGFTLGWG----KGVPDEFVKQIL--DVKQRSDEITGLEPNSDYVISLRAFNEMGDG 427
+ + + +G P +K++L + K R I L + Y +++A N G G
Sbjct: 127 GEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWG 186
Query: 428 PQK 430
P++
Sbjct: 187 PER 189
>pdb|3F7Q|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
pdb|3F7Q|B Chain B, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 234
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 6/134 (4%)
Query: 59 APQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAI-IQG 117
APQ+ +A G R + WLPP+ G+ + Y V Y +G A+ ++V ++ +
Sbjct: 8 APQNPNAKAAGSRKIHFNWLPPS---GKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTN 64
Query: 118 LHPNTSYTFRVVAYNXXXXXXXXXXXPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKP 177
L+P Y +V AY +T E VPS P + VV ++ ++W +P
Sbjct: 65 LYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQE--VPSEPGRLAFNVVSSTVTQLSWAEP 122
Query: 178 TVTNGEIKHYTLYY 191
TNGEI Y + Y
Sbjct: 123 AETNGEITAYEVCY 136
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
Query: 487 YLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTT 546
Y V+Y + G S +++ + SV++ +L P YE V A+ E +S +V T
Sbjct: 36 YRVKY-WIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRT 94
Query: 547 QEAAPASAPR-DLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYS--SDPNTDQWIEE 603
+ P+ R VVS ++ L+W P NG+I+ Y + Y +D N +
Sbjct: 95 HQEVPSEPGRLAFNVVSS----TVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMK 150
Query: 604 SVVGDK------MSTNVRGLEPGRIYYFKIKARNSAGSSP 637
V+ D + N+R +P Y + +KARN AG P
Sbjct: 151 KVLVDNPKNRMLLIENLRESQP---YRYTVKARNGAGWGP 187
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 19/184 (10%)
Query: 157 PLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTL-YYLEEDTSVERHVVTPQL-SYELTGL 214
P N N G+ + W P+ G+ Y + Y+++ D+ E H++ ++ S ELT L
Sbjct: 9 PQNPNAKAAGSRKIHFNWLPPS---GKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNL 65
Query: 215 SHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPANSITV--------RWQPPSRR 266
+ Y + V A+ G G S +S +T + PSEP + V W P+
Sbjct: 66 YPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAE- 124
Query: 267 GQNGIITGYKLRYXXXXXXXX----XGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVN 322
NG IT Y++ Y + + R+ +I L +S Y+ + A N
Sbjct: 125 -TNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGA 183
Query: 323 GSGP 326
G GP
Sbjct: 184 GWGP 187
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 79/193 (40%), Gaps = 34/193 (17%)
Query: 349 PASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGL 408
P + A+ G I +W PP+ + + R W +G E +LD K S E+T L
Sbjct: 9 PQNPNAKAAGSRKIHFNWLPPSGKPMGYR--VKYWIQG-DSESEAHLLDSKVPSVELTNL 65
Query: 409 EPNSDYVISLRAFNEMGDGPQKYESL---RTRNEPPPQAPKVLIPPMGLKSEVLSPYSMR 465
P DY + + A+ G+GP Y SL RT E P + P L V+S +
Sbjct: 66 YPYCDYEMKVCAYGAQGEGP--YSSLVSCRTHQEVPSE-------PGRLAFNVVSSTVTQ 116
Query: 466 ISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASN-------PRYKYI--NANITSVQIND 516
+SW + + +GE + Y G N P K + N + I +
Sbjct: 117 LSWAEPA-----ETNGE-----ITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIEN 166
Query: 517 LRPSTQYEFTVKV 529
LR S Y +TVK
Sbjct: 167 LRESQPYRYTVKA 179
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 73/186 (39%), Gaps = 23/186 (12%)
Query: 253 ANSITVRWQPPSRRGQNGIITGYKLRYXXXXXXXXXGETVTTAGDRRL--YVITGLNKST 310
+ I W PPS G GY+++Y + D ++ +T L
Sbjct: 19 SRKIHFNWLPPS-----GKPMGYRVKYWIQGDSESEAHLL----DSKVPSVELTNLYPYC 69
Query: 311 TYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPA 370
Y++K+ A G GP + S T + VP P L + +SW PA
Sbjct: 70 DYEMKVCAYGAQGEGPYSSLVSCRTHQE------VPSEPGRLAFNVVSSTVTQLSWAEPA 123
Query: 371 DQSIMVRGFTLGWG----KGVPDEFVKQIL--DVKQRSDEITGLEPNSDYVISLRAFNEM 424
+ + + + + +G P +K++L + K R I L + Y +++A N
Sbjct: 124 ETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGA 183
Query: 425 GDGPQK 430
G GP++
Sbjct: 184 GWGPER 189
>pdb|1QG3|A Chain A, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
pdb|1QG3|B Chain B, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
Length = 195
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 6/134 (4%)
Query: 59 APQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAI-IQG 117
APQ+ +A G R + WLPP+ G+ + Y V Y +G A+ ++V ++ +
Sbjct: 4 APQNPNAKAAGSRKIHFNWLPPS---GKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTN 60
Query: 118 LHPNTSYTFRVVAYNXXXXXXXXXXXPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKP 177
L+P Y +V AY +T E VPS P + VV ++ ++W +P
Sbjct: 61 LYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQE--VPSEPGRLAFNVVSSTVTQLSWAEP 118
Query: 178 TVTNGEIKHYTLYY 191
TNGEI Y + Y
Sbjct: 119 AETNGEITAYEVCY 132
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
Query: 487 YLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTT 546
Y V+Y + G S +++ + SV++ +L P YE V A+ E +S +V T
Sbjct: 32 YRVKY-WIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRT 90
Query: 547 QEAAPASAPR-DLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYS--SDPNTDQWIEE 603
+ P+ R VVS ++ L+W P NG+I+ Y + Y +D N +
Sbjct: 91 HQEVPSEPGRLAFNVVSS----TVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMK 146
Query: 604 SVVGDK------MSTNVRGLEPGRIYYFKIKARNSAGSSP 637
V+ D + N+R +P Y + +KARN AG P
Sbjct: 147 KVLVDNPKNRMLLIENLRESQP---YRYTVKARNGAGWGP 183
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 19/184 (10%)
Query: 157 PLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTL-YYLEEDTSVERHVVTPQL-SYELTGL 214
P N N G+ + W P+ G+ Y + Y+++ D+ E H++ ++ S ELT L
Sbjct: 5 PQNPNAKAAGSRKIHFNWLPPS---GKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNL 61
Query: 215 SHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPANSITV--------RWQPPSRR 266
+ Y + V A+ G G S +S +T + PSEP + V W P+
Sbjct: 62 YPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAE- 120
Query: 267 GQNGIITGYKLRYXXXXXXXX----XGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVN 322
NG IT Y++ Y + + R+ +I L +S Y+ + A N
Sbjct: 121 -TNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGA 179
Query: 323 GSGP 326
G GP
Sbjct: 180 GWGP 183
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 79/193 (40%), Gaps = 34/193 (17%)
Query: 349 PASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGL 408
P + A+ G I +W PP+ + + R W +G E +LD K S E+T L
Sbjct: 5 PQNPNAKAAGSRKIHFNWLPPSGKPMGYR--VKYWIQG-DSESEAHLLDSKVPSVELTNL 61
Query: 409 EPNSDYVISLRAFNEMGDGPQKYESL---RTRNEPPPQAPKVLIPPMGLKSEVLSPYSMR 465
P DY + + A+ G+GP Y SL RT E P + P L V+S +
Sbjct: 62 YPYCDYEMKVCAYGAQGEGP--YSSLVSCRTHQEVPSE-------PGRLAFNVVSSTVTQ 112
Query: 466 ISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASN-------PRYKYI--NANITSVQIND 516
+SW + + +GE + Y G N P K + N + I +
Sbjct: 113 LSWAEPA-----ETNGE-----ITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIEN 162
Query: 517 LRPSTQYEFTVKV 529
LR S Y +TVK
Sbjct: 163 LRESQPYRYTVKA 175
>pdb|1MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 20 Structures
pdb|2MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 10 Structures
Length = 184
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 19/190 (10%)
Query: 451 PMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANIT 510
P G S ++ S + W+ P Y++R+ PR + +
Sbjct: 5 PTGFDSSDITANSFTVHWVAPRAPIT---------GYIIRHHAEHSVGRPRQDRVPPSRN 55
Query: 511 SVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLV 570
S+ + +L P T+Y ++ V ++ES + Q+A + PRDL V++ P+ +
Sbjct: 56 SITLTNLNPGTEYVVSIIAVNGREESPPLI-----GQQATVSDIPRDLEVIAST--PTSL 108
Query: 571 NLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKAR 630
++W+PP + + Y I Y E +V G K + + ++PG Y + A
Sbjct: 109 LISWEPPAVS---VRYYRITYGETGGNSPVQEFTVPGSKSTATINNIKPGADYTITLYAV 165
Query: 631 NSAGSSPYSS 640
G SP SS
Sbjct: 166 TGRGDSPASS 175
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 20/177 (11%)
Query: 253 ANSITVRWQPPSRRGQNGIITGYKLRYXXXXXXXXXGETVTTAGDRRLYVITGLNKSTTY 312
ANS TV W P ITGY +R+ + R +T LN T Y
Sbjct: 15 ANSFTVHWVAP-----RAPITGYIIRHHAEHSVGRPRQD-RVPPSRNSITLTNLNPGTEY 68
Query: 313 QIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQ 372
+ + A+N P A TV DIP L+ P+S+++SW PPA
Sbjct: 69 VVSIIAVNGREESPPLIGQQA----------TVSDIPRDLEVIASTPTSLLISWEPPA-- 116
Query: 373 SIMVRGFTLGWGKGVPDEFVKQILDVKQRSDE-ITGLEPNSDYVISLRAFNEMGDGP 428
+ VR + + +G+ + V++ +S I ++P +DY I+L A GD P
Sbjct: 117 -VSVRYYRITYGETGGNSPVQEFTVPGSKSTATINNIKPGADYTITLYAVTGRGDSP 172
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 25/143 (17%)
Query: 400 QRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPP---QAPKVLIPPMGLKS 456
+ S +T L P ++YV+S+ A N R E PP Q V P L+
Sbjct: 54 RNSITLTNLNPGTEYVVSIIAVNG-------------REESPPLIGQQATVSDIPRDLEV 100
Query: 457 EVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQIND 516
+P S+ ISW + R+Y + Y G S + + + ++ IN+
Sbjct: 101 IASTPTSLLISW---------EPPAVSVRYYRITYGETGGNSPVQEFTVPGSKSTATINN 151
Query: 517 LRPSTQYEFTVKVVRAKKESEWS 539
++P Y T+ V + +S S
Sbjct: 152 IKPGADYTITLYAVTGRGDSPAS 174
>pdb|2EDX|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 134
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 155 SPPLNVNIPVVGTSSLLVTWEKPTVT--NGEIKHYTLYYLEEDTSVE-RHVVT----PQL 207
+PP V +G++++ V+W P NG I Y++ Y D RHVV
Sbjct: 20 APPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHS 79
Query: 208 SYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPP 252
S++L GL +T Y +WV AH G G S + V+T D PS PP
Sbjct: 80 SWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPP 124
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 10/106 (9%)
Query: 231 GAGTTSQELSVQTLSDKPSEPP---------ANSITVRWQPPSRRGQNGIITGYKLRYXX 281
G+ +S + +T PS PP + ++ V W PP +NG+IT Y + Y
Sbjct: 1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEA 60
Query: 282 XXXXXXXGETVT-TAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGP 326
V + + + + GL K T Y++ + A G GP
Sbjct: 61 VDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGP 106
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 546 TQEAAPASAPRDLTVVSKEGDPSLVNLNWQPP--KSANGQISGYTILYSSDPNTDQW--I 601
T ++ P++ P+ + VS + V ++W PP S NG I+ Y++ Y + D+ +
Sbjct: 13 TAQSTPSAPPQKVMCVSMGS--TTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHV 70
Query: 602 EESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDM 650
+ + + S ++ GLE Y ++A G P SS V T D+
Sbjct: 71 VDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDV 119
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 7/125 (5%)
Query: 43 STGSIEAINETLTLPSAPQSVSAIMVGPRSVALRWLPPTLP--RGEILVYCVLYKR-EGS 99
S+G+IEA T + PQ V + +G +V + W+PP G I Y V Y+ +G
Sbjct: 5 SSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGE 64
Query: 100 ERER-AYNATARVEAI--IQGLHPNTSYTFRVVAYNXXXXXXXXXXXPVKTEPEDHVPSP 156
+R R + +R + + GL T Y V A+ V+T+ ED P
Sbjct: 65 DRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTD-EDVPSGP 123
Query: 157 PLNVN 161
P V
Sbjct: 124 PRKVE 128
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 358 GPSSIIVSWTPP-AD-QSIMVRGFTLGWGKGVPDEFVKQILDVKQR---SDEITGLEPNS 412
G +++ VSW PP AD ++ ++ +++ + ++ + ++D R S ++ GLE +
Sbjct: 31 GSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWT 90
Query: 413 DYVISLRAFNEMGDGPQKYESLRTRNEPPPQAP 445
+Y + +RA ++G GP+ L +E P P
Sbjct: 91 EYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGP 123
>pdb|3T1W|A Chain A, Structure Of The Four-Domain Fragment Fn7b89 Of Oncofetal
Fibronectin
Length = 375
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 89/396 (22%), Positives = 150/396 (37%), Gaps = 57/396 (14%)
Query: 249 SEPPANSITVRWQPPSRRGQNGIITGYKLRYXXXXXXXXXGETVTTAGDRRLYVITGLNK 308
+ P +TV W+ R ITGY++ D+ L+
Sbjct: 13 ANPDTGVLTVSWE----RSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSP 68
Query: 309 STTYQIKLWAMNVNG-SGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWT 367
Y + ++ + + S P +D E L + + DI S SI + WT
Sbjct: 69 GLEYNVSVYTVKDDKESVPISDTIIPEV--PQLTDLSFVDITDS---------SIGLRWT 117
Query: 368 PPADQSIM-VRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGD 426
P +I+ R + G+G+P + +D +TGLEP DY IS+ +
Sbjct: 118 PLNSSTIIGYRITVVAAGEGIP--IFEDFVDSSVGYYTVTGLEPGIDYDISVITL--ING 173
Query: 427 GPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISW-----IDTTLPDQFQQHG 481
G +L + PP P L+ + P +MR++W ID T
Sbjct: 174 GESAPTTLTQQTAVPP--------PTDLRFTNIGPDTMRVTWAPPPSIDLT--------- 216
Query: 482 EEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMI 541
++LVRY+ + + I+ + +V + +L P T+Y +V V + ES
Sbjct: 217 ----NFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRG 272
Query: 542 VLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWI 601
T ++ D+T S ++W P++ I+GY I + + + +
Sbjct: 273 RQKTGLDSPTGIDFSDITANS-------FTVHWIAPRAT---ITGYRIRHHPEHFSGRPR 322
Query: 602 EESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSP 637
E+ V + S + L PG Y I A N SP
Sbjct: 323 EDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESP 358
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 110/283 (38%), Gaps = 30/283 (10%)
Query: 50 INETLTLPSAPQ--SVSAIMVGPRSVALRWLPPTLPRGEILVY--CVLYKREGSERERAY 105
I++T+ +P PQ +S + + S+ LRW P L I+ Y V+ EG +
Sbjct: 88 ISDTI-IPEVPQLTDLSFVDITDSSIGLRWTP--LNSSTIIGYRITVVAAGEGIPIFEDF 144
Query: 106 NATARVEAIIQGLHPNTSYTFRVVAYNXXXXXXXXXXXPVKTEPEDHVPSPPLNVNIPVV 165
++ + GL P Y V+ P + VP PP ++ +
Sbjct: 145 VDSSVGYYTVTGLEPGIDYDISVITL-----INGGESAPTTLTQQTAVP-PPTDLRFTNI 198
Query: 166 GTSSLLVTWEKP---TVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELTGLSHFTLYSI 222
G ++ VTW P +TN ++ Y+ EED + E + + LT L T Y +
Sbjct: 199 GPDTMRVTWAPPPSIDLTNFLVR-YSPVKNEEDVA-ELSISPSDNAVVLTNLLPGTEYVV 256
Query: 223 WVVAHNGNGAGTTSQELSVQTLSDKP-----SEPPANSITVRWQPPSRRGQNGIITGYKL 277
V + T + +T D P S+ ANS TV W P ITGY++
Sbjct: 257 SVSSVYEQHESTPLRGRQ-KTGLDSPTGIDFSDITANSFTVHWIAP-----RATITGYRI 310
Query: 278 RYXXXXXXXXXGETVTTAGDRRLYVITGLNKSTTYQIKLWAMN 320
R+ E R +T L T Y + + A+N
Sbjct: 311 RHHPEHFSGRPRED-RVPHSRNSITLTNLTPGTEYVVSIVALN 352
>pdb|1FNH|A Chain A, Crystal Structure Of Heparin And Integrin Binding Segment
Of Human Fibronectin
Length = 271
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 79/187 (42%), Gaps = 27/187 (14%)
Query: 255 SITVRWQPPSRRGQNGIITGYKLRYXXXXXXXXXGETVTTAGDRRLYVITGLNKSTTYQI 314
+IT+ W R + ITG+++ T+ D R Y ITGL T Y+I
Sbjct: 109 TITISW-----RTKTETITGFQVDAVPANGQTPIQRTI--KPDVRSYTITGLQPGTDYKI 161
Query: 315 KLWAMNVNG-SGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQS 373
L+ +N N S P + T D P++L+ P+S++VSW PP +
Sbjct: 162 YLYTLNDNARSSPVV-----------IDASTAIDAPSNLRFLATTPNSLLVSWQPPRAR- 209
Query: 374 IMVRGFTLGWGK-GVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYE 432
+ G+ + + K G P V ITGLEP ++Y I + A QK E
Sbjct: 210 --ITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNN----QKSE 263
Query: 433 SLRTRNE 439
L R +
Sbjct: 264 PLIGRKK 270
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 112/286 (39%), Gaps = 42/286 (14%)
Query: 255 SITVRWQPPSRRGQNGIITGYKLRYXXXXXXXXXGETVTTAGDRRLYVITGLNKSTTYQI 314
S++ +W PP N +TGY++R E + A D V++GL +T Y++
Sbjct: 17 SLSAQWTPP-----NVQLTGYRVRVTPKEKTGPMKE-INLAPDSSSVVVSGLMVATKYEV 70
Query: 315 KLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSI 374
++A+ D ++ + P + ++I +SW ++
Sbjct: 71 SVYALK--------DTLTSRPAQGVVTTLENVSPPRRARVTDATETTITISW---RTKTE 119
Query: 375 MVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESL 434
+ GF + +++ + RS ITGL+P +DY I L N+
Sbjct: 120 TITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNA--------- 170
Query: 435 RTRNEPPP-QAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTH 493
R+ P A + P L+ +P S+ +SW P + + G Y+++Y
Sbjct: 171 --RSSPVVIDASTAIDAPSNLRFLATTPNSLLVSW----QPPRARITG-----YIIKYEK 219
Query: 494 LLGASNPR--YKYINANITSVQINDLRPSTQYEFTVKVVRAKKESE 537
S PR +T I L P T+Y V ++ ++SE
Sbjct: 220 --PGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSE 263
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 91/228 (39%), Gaps = 21/228 (9%)
Query: 59 APQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAIIQGL 118
AP + V P S++ +W PP + V ++ G +E A ++ GL
Sbjct: 4 APTDLKFTQVTPTSLSAQWTPPNVQLTGYRVRVTPKEKTGPMKEINL-APDSSSVVVSGL 62
Query: 119 HPNTSYTFRVVAYNXXXXXXXXXXXPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPT 178
T Y V A V T E+ SPP + +++ ++W T
Sbjct: 63 MVATKYEVSVYALKDTLTSRPAQG--VVTTLENV--SPPRRARVTDATETTITISWRTKT 118
Query: 179 VTNGEIKHYTLYYLEED--TSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTS 236
T I + + + + T ++R + SY +TGL T Y I++ N N A ++
Sbjct: 119 ET---ITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDN-ARSSP 174
Query: 237 QELSVQTLSDKPSE-----PPANSITVRWQPPSRRGQNGIITGYKLRY 279
+ T D PS NS+ V WQPP R ITGY ++Y
Sbjct: 175 VVIDASTAIDAPSNLRFLATTPNSLLVSWQPPRAR-----ITGYIIKY 217
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 59 APQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSE-RERAYNATARV-EAIIQ 116
AP ++ + P S+ + W PP R I Y + Y++ GS RE V EA I
Sbjct: 185 APSNLRFLATTPNSLLVSWQPP---RARITGYIIKYEKPGSPPREVVPRPRPGVTEATIT 241
Query: 117 GLHPNTSYTFRVVA 130
GL P T YT V+A
Sbjct: 242 GLEPGTEYTIYVIA 255
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 116/295 (39%), Gaps = 41/295 (13%)
Query: 349 PASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDE---- 404
P LK P+S+ WTPP ++ + G+ + + P E + ++ D
Sbjct: 5 PTDLKFTQVTPTSLSAQWTPP---NVQLTGYRV---RVTPKEKTGPMKEINLAPDSSSVV 58
Query: 405 ITGLEPNSDYVISLRAFNE-MGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYS 463
++GL + Y +S+ A + + P + N PP+ +V
Sbjct: 59 VSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSPPRRARV---------------- 102
Query: 464 MRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQY 523
+TT+ ++ E + V G + P + I ++ S I L+P T Y
Sbjct: 103 --TDATETTITISWRTKTETITGFQVDAVPANGQT-PIQRTIKPDVRSYTITGLQPGTDY 159
Query: 524 EFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQ 583
+ + + S +I +T + AP +L ++ + LV +WQPP++ +
Sbjct: 160 KIYLYTLNDNARSSPVVIDASTAID-----APSNLRFLATTPNSLLV--SWQPPRA---R 209
Query: 584 ISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIY-YFKIKARNSAGSSP 637
I+GY I Y + + + + GLEPG Y + I +N+ S P
Sbjct: 210 ITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEP 264
>pdb|3R8Q|A Chain A, Structure Of Fibronectin Domain 12-14
Length = 290
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 79/187 (42%), Gaps = 27/187 (14%)
Query: 255 SITVRWQPPSRRGQNGIITGYKLRYXXXXXXXXXGETVTTAGDRRLYVITGLNKSTTYQI 314
+IT+ W R + ITG+++ T+ D R Y ITGL T Y+I
Sbjct: 128 TITISW-----RTKTETITGFQVDAVPANGQTPIQRTI--KPDVRSYTITGLQPGTDYKI 180
Query: 315 KLWAMNVNG-SGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQS 373
L+ +N N S P + T D P++L+ P+S++VSW PP +
Sbjct: 181 YLYTLNDNARSSPVV-----------IDASTAIDAPSNLRFLATTPNSLLVSWQPPRAR- 228
Query: 374 IMVRGFTLGWGK-GVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYE 432
+ G+ + + K G P V ITGLEP ++Y I + A QK E
Sbjct: 229 --ITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNN----QKSE 282
Query: 433 SLRTRNE 439
L R +
Sbjct: 283 PLIGRKK 289
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 112/286 (39%), Gaps = 42/286 (14%)
Query: 255 SITVRWQPPSRRGQNGIITGYKLRYXXXXXXXXXGETVTTAGDRRLYVITGLNKSTTYQI 314
S++ +W PP N +TGY++R E + A D V++GL +T Y++
Sbjct: 36 SLSAQWTPP-----NVQLTGYRVRVTPKEKTGPMKE-INLAPDSSSVVVSGLMVATKYEV 89
Query: 315 KLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSI 374
++A+ D ++ + P + ++I +SW ++
Sbjct: 90 SVYALK--------DTLTSRPAQGVVTTLENVSPPRRARVTDATETTITISW---RTKTE 138
Query: 375 MVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISLRAFNEMGDGPQKYESL 434
+ GF + +++ + RS ITGL+P +DY I L N+
Sbjct: 139 TITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLND----------- 187
Query: 435 RTRNEPPP-QAPKVLIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTH 493
R+ P A + P L+ +P S+ +SW P + + G Y+++Y
Sbjct: 188 NARSSPVVIDASTAIDAPSNLRFLATTPNSLLVSW----QPPRARITG-----YIIKYEK 238
Query: 494 LLGASNPR--YKYINANITSVQINDLRPSTQYEFTVKVVRAKKESE 537
S PR +T I L P T+Y V ++ ++SE
Sbjct: 239 --PGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSE 282
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 91/228 (39%), Gaps = 21/228 (9%)
Query: 59 APQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAIIQGL 118
AP + V P S++ +W PP + V ++ G +E A ++ GL
Sbjct: 23 APTDLKFTQVTPTSLSAQWTPPNVQLTGYRVRVTPKEKTGPMKEINL-APDSSSVVVSGL 81
Query: 119 HPNTSYTFRVVAYNXXXXXXXXXXXPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPT 178
T Y V Y V T E+ SPP + +++ ++W T
Sbjct: 82 MVATKY--EVSVYALKDTLTSRPAQGVVTTLENV--SPPRRARVTDATETTITISWRTKT 137
Query: 179 VTNGEIKHYTLYYLEED--TSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTS 236
T I + + + + T ++R + SY +TGL T Y I++ N N A ++
Sbjct: 138 ET---ITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDN-ARSSP 193
Query: 237 QELSVQTLSDKPSE-----PPANSITVRWQPPSRRGQNGIITGYKLRY 279
+ T D PS NS+ V WQPP R ITGY ++Y
Sbjct: 194 VVIDASTAIDAPSNLRFLATTPNSLLVSWQPPRAR-----ITGYIIKY 236
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 59 APQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSE-RERAYNATARV-EAIIQ 116
AP ++ + P S+ + W PP R I Y + Y++ GS RE V EA I
Sbjct: 204 APSNLRFLATTPNSLLVSWQPP---RARITGYIIKYEKPGSPPREVVPRPRPGVTEATIT 260
Query: 117 GLHPNTSYTFRVVA 130
GL P T YT V+A
Sbjct: 261 GLEPGTEYTIYVIA 274
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 120/303 (39%), Gaps = 43/303 (14%)
Query: 343 FTVPDIPA--SLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQ 400
F P IPA LK P+S+ WTPP ++ + G+ + + P E + ++
Sbjct: 16 FQGPAIPAPTDLKFTQVTPTSLSAQWTPP---NVQLTGYRV---RVTPKEKTGPMKEINL 69
Query: 401 RSDE----ITGLEPNSDYVISLRAFNE-MGDGPQKYESLRTRNEPPPQAPKVLIPPMGLK 455
D ++GL + Y +S+ A + + P + N PP+ +V
Sbjct: 70 APDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSPPRRARV-------- 121
Query: 456 SEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQIN 515
+TT+ ++ E + V G + P + I ++ S I
Sbjct: 122 ----------TDATETTITISWRTKTETITGFQVDAVPANGQT-PIQRTIKPDVRSYTIT 170
Query: 516 DLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQ 575
L+P T Y+ + + S +I +T + AP +L ++ + LV +WQ
Sbjct: 171 GLQPGTDYKIYLYTLNDNARSSPVVIDASTAID-----APSNLRFLATTPNSLLV--SWQ 223
Query: 576 PPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIY-YFKIKARNSAG 634
PP++ +I+GY I Y + + + + GLEPG Y + I +N+
Sbjct: 224 PPRA---RITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQK 280
Query: 635 SSP 637
S P
Sbjct: 281 SEP 283
>pdb|1VA9|A Chain A, Solution Structure Of The Second Fniii Domain Of Dscaml1
Protein
Length = 122
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 10/110 (9%)
Query: 150 EDHVP-SPPLNVNIPVVGTSSLLVTWEKPT--VTNGEIKHYTLYYLEED-------TSVE 199
E+ P PP++V + V + S+ VTW+ P + NG I+ Y + Y E + VE
Sbjct: 11 EEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVE 70
Query: 200 RHVVTPQLSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPS 249
Y L L F Y + V A N G G +S E++ TL PS
Sbjct: 71 MKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPS 120
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 253 ANSITVRWQPPSRRGQNGIITGYKLRYXXXXXXXXXGETVT---TAGDRRLYVITGLNKS 309
+ SI V W+ P + QNG+I GY++ Y ++ GD +Y + L K
Sbjct: 29 SQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKF 88
Query: 310 TTYQIKLWAMNVNGSGPATDWFSAETF 336
Y + + A N G+GP++ +A T
Sbjct: 89 AQYGVVVQAFNRAGTGPSSSEINATTL 115
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 14/110 (12%)
Query: 546 TQEAAPASAPRDLT---VVSKEGDPSLVNLNWQPPKSA--NGQISGYTILY--SSDPNTD 598
T+EAAP P D+T V S+ + + W+ PK NG I GY I Y +S +
Sbjct: 10 TEEAAPDGPPMDVTLQPVTSQS-----IQVTWKAPKKELQNGVIRGYQIGYRENSPGSNG 64
Query: 599 QW--IEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTT 646
Q+ +E GD + L+ Y ++A N AG+ P SS + TT
Sbjct: 65 QYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATT 114
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 342 EFTVPDIP-ASLKARPGGPSSIIVSWTPPAD--QSIMVRGFTLGWGKGVPDEFVK-QILD 397
E PD P + +P SI V+W P Q+ ++RG+ +G+ + P + I++
Sbjct: 11 EEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVE 70
Query: 398 VKQRSDE----ITGLEPNSDYVISLRAFNEMGDGPQKYE 432
+K D + L+ + Y + ++AFN G GP E
Sbjct: 71 MKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSE 109
>pdb|4GH7|B Chain B, Crystal Structure Of Anticalin N7a In Complex With
Oncofetal Fibronectin Fragment Fn7b8
pdb|4GH7|D Chain D, Crystal Structure Of Anticalin N7a In Complex With
Oncofetal Fibronectin Fragment Fn7b8
Length = 285
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 31/183 (16%)
Query: 360 SSIIVSWTPPADQSIM-VRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISL 418
SSI + WTP +I+ R + G+G+P + +D +TGLEP DY IS+
Sbjct: 110 SSIGLRWTPLNSSTIIGYRITVVAAGEGIP--IFEDFVDSSVGYYTVTGLEPGIDYDISV 167
Query: 419 RAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISW-----IDTTL 473
+ G +L + PP P L+ + P +MR++W ID T
Sbjct: 168 ITL--INGGESAPTTLTQQTAVPP--------PTDLRFTNIGPDTMRVTWAPPPSIDLT- 216
Query: 474 PDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAK 533
++LVRY+ + + I+ + +V + +L P T+Y +V V +
Sbjct: 217 ------------NFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQ 264
Query: 534 KES 536
ES
Sbjct: 265 HES 267
>pdb|1TDQ|A Chain A, Structural Basis For The Interactions Between Tenascins
And The C-Type Lectin Domains From Lecticans: Evidence
For A Cross-Linking Role For Tenascins
Length = 283
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 116/290 (40%), Gaps = 41/290 (14%)
Query: 345 VPDIPASLKARPGGPSSIIVSWTPP-ADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSD 403
V D P + R + V WTPP A ++ + L G+G F Q + Q S
Sbjct: 14 VIDGPTQILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKTTFRLQ-PPLSQYS- 71
Query: 404 EITGLEPNSDYVISLRAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYS 463
+ L P S Y +S+ A +R NE + + +E+ +P +
Sbjct: 72 -VQALRPGSRYEVSISA-------------VRGTNESDASSTQ-------FTTEIDAPKN 110
Query: 464 MRI-SWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRY---KYINANITSVQINDLRP 519
+R+ S T+L ++ E + Y V Y+ L G K I T + DL P
Sbjct: 111 LRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPT-TKTTLTDLVP 169
Query: 520 STQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPPKS 579
T+Y + V K+S + T +PRDL V + + ++L W
Sbjct: 170 GTEYGVGISAVMNSKQS-----IPATMNARTELDSPRDLMVTASS--ETSISLIW---TK 219
Query: 580 ANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKA 629
A+G I Y I ++ P++ E +V D+ S + LEPG Y I A
Sbjct: 220 ASGPIDHYRITFT--PSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITA 267
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 15/154 (9%)
Query: 488 LVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQ 547
L++Y + G + ++ + LRP ++YE ++ VR ES+ S +TQ
Sbjct: 46 LLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDAS-----STQ 100
Query: 548 EAAPASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESV-- 605
AP++L V S+ + ++L W ++ + Y ++YS+ +Q+ E V
Sbjct: 101 FTTEIDAPKNLRVGSRTA--TSLDLEWD---NSEAEAQEYKVVYSTLAG-EQYHEVLVPK 154
Query: 606 -VGDKMSTNVRGLEPGRIYYFKIKA-RNSAGSSP 637
+G T + L PG Y I A NS S P
Sbjct: 155 GIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIP 188
>pdb|2GEE|A Chain A, Crystal Structure Of Human Type Iii Fibronectin
Extradomain B And Domain 8
Length = 203
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 31/183 (16%)
Query: 360 SSIIVSWTPPADQSIM-VRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISL 418
SSI + WTP +I+ R + G+G+P + +D +TGLEP DY IS+
Sbjct: 37 SSIGLRWTPLNSSTIIGYRITVVAAGEGIP--IFEDFVDSSVGYYTVTGLEPGIDYDISV 94
Query: 419 RAFNEMGDGPQKYESLRTRNEPPPQAPKVLIPPMGLKSEVLSPYSMRISW-----IDTTL 473
G+ + +T + PP L+ + P +MR++W ID T
Sbjct: 95 YTVKNGGESTPTTLTQQT----------AVPPPTDLRFTNIGPDTMRVTWAPPPSIDLT- 143
Query: 474 PDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSVQINDLRPSTQYEFTVKVVRAK 533
++LVRY+ + + I+ + +V + +L P T+Y +V V +
Sbjct: 144 ------------NFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQ 191
Query: 534 KES 536
ES
Sbjct: 192 HES 194
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 18/171 (10%)
Query: 254 NSITVRWQPPSRRGQNGIITGYKLRYXXXXXXXXXGETVTTAGDRRLYVITGLNKSTTYQ 313
+SI +RW P + I GY++ E + Y +TGL Y
Sbjct: 37 SSIGLRWTP----LNSSTIIGYRITVVAAGEGIPIFEDFVDSS-VGYYTVTGLEPGIDYD 91
Query: 314 IKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQS 373
I ++ + G T T +Q + VP P L+ GP ++ V+W PP S
Sbjct: 92 ISVYTVKNGGESTPT------TLTQ---QTAVPP-PTDLRFTNIGPDTMRVTWAPPP--S 139
Query: 374 IMVRGFTLGWGKGVPDEFVKQI-LDVKQRSDEITGLEPNSDYVISLRAFNE 423
I + F + + +E V ++ + + +T L P ++YV+S+ + E
Sbjct: 140 IDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYE 190
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 54/130 (41%), Gaps = 9/130 (6%)
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPS- 568
T V +N+L P+T YE V V K + ++S I + T S P S G PS
Sbjct: 252 TMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPP------SIHGQPSS 305
Query: 569 --LVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFK 626
L+ I Y + Y S DQW+E+ V G+K + L+ Y +
Sbjct: 306 GKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQ 365
Query: 627 IKARNSAGSS 636
I A N G S
Sbjct: 366 ITAANRLGYS 375
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNG-EIKHYTLYYLEEDTSVERHVVTP--QLSY 209
VPS P V I + ++ V++ KP G I HY + E + + + V + Q
Sbjct: 195 VPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMV 254
Query: 210 ELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPANSITVRWQPPSRR 266
L L T Y I V A NG G G S+ QTL + PP ++ QP S +
Sbjct: 255 VLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPP----SIHGQPSSGK 307
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 83/205 (40%), Gaps = 19/205 (9%)
Query: 230 NGAGTTSQELSVQTLSDKPSEPPANSITVRWQPPSRRGQN-----GIITGYKLRYXXXXX 284
N GT QE + L+D PS P I Q ++ N G + + +
Sbjct: 179 NHIGTRFQEY-ILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEV 237
Query: 285 XXXXGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFT 344
+ V + G + + V+ L +TTY+I++ A+N G G D+ E F T
Sbjct: 238 ASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQG---DYSKIEIFQ------T 288
Query: 345 VP---DIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGW-GKGVPDEFVKQILDVKQ 400
+P P S+ +P S +S T D + + + + K D+++++ + +
Sbjct: 289 LPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNK 348
Query: 401 RSDEITGLEPNSDYVISLRAFNEMG 425
+ L+ Y + + A N +G
Sbjct: 349 DHIILEHLQWTMGYEVQITAANRLG 373
>pdb|1X5L|A Chain A, Solution Structure Of The Second Fn3 Domain Of Eph
Receptor A8 Protein
Length = 111
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 553 SAPRDLTVVSKE-GDPSLVNLNWQPPKSANGQISGYTI-LYSSDPNTDQWIEESVVGDKM 610
+AP + V+ +E + V+L WQ P+ NG I Y I Y D + V +
Sbjct: 9 AAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRA 68
Query: 611 STNVRGLEPGRIYYFKIKARNSAGSSPYSSTV 642
+ V GL+PG Y F+++AR SAG +S +
Sbjct: 69 T--VSGLKPGTRYVFQVRARTSAGCGRFSQAM 98
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELT 212
PS + + G +S+ + W++P NG I Y + Y E+D ++ + ++ T
Sbjct: 10 APSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRAT 69
Query: 213 --GLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPAN 254
GL T Y V A G G SQ + V+T KPS P +
Sbjct: 70 VSGLKPGTRYVFQVRARTSAGCGRFSQAMEVET--GKPSGPSSG 111
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 58 SAPQSVSAIM---VGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARV--E 112
+AP V I G SV+L W P P G IL Y + Y + E + +Y+ V
Sbjct: 9 AAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQ-SYSTLKAVTTR 67
Query: 113 AIIQGLHPNTSYTFRVVA 130
A + GL P T Y F+V A
Sbjct: 68 ATVSGLKPGTRYVFQVRA 85
>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
pdb|3LPW|B Chain B, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
Length = 197
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 10/184 (5%)
Query: 54 LTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATA---- 109
+ P PQ + V SV L W PP L G + ++ KRE + +AY+ A
Sbjct: 3 MDTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKREST--RKAYSTVATNCH 60
Query: 110 RVEAIIQGLHPNTSYTFRVVAYNXXXXXXXXXXXPVKTEPEDHVPSPPLNVNIPVVGTSS 169
+ + L SY FRV+A N ++ P PP + + V +S
Sbjct: 61 KTSWKVDQLQEGCSYYFRVLAENEYGIGLPAET--AESVKASERPLPPGKITLMDVTRNS 118
Query: 170 LLVTWEKPTVTNG-EIKHYTLYYLEEDTSVERHVVTPQLSYE-LTGLSHFTLYSIWVVAH 227
+ ++WEKP G I Y + + + T +++ +TGL YS V A
Sbjct: 119 VSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSAQ 178
Query: 228 NGNG 231
N G
Sbjct: 179 NEKG 182
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 24/194 (12%)
Query: 450 PPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYI--NA 507
PP LK + ++ S+ ++W D L D G + ++Y+V ++ Y + N
Sbjct: 8 PPQDLKVKEVTKTSVTLTW-DPPLLD----GGSKIKNYIVEKRE---STRKAYSTVATNC 59
Query: 508 NITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASA----PRDLTVVSK 563
+ TS +++ L+ Y F R E+E+ + + T E+ AS P +T++
Sbjct: 60 HKTSWKVDQLQEGCSYYF-----RVLAENEYGIGLPAETAESVKASERPLPPGKITLMDV 114
Query: 564 EGDPSLVNLNWQPPKSANG-QISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRI 622
+ V+L+W+ P+ G +I GY I+ +D+W + V +T + GL G
Sbjct: 115 TRNS--VSLSWEKPEHDGGSRILGY-IVEMQTKGSDKWATCATVKVTEAT-ITGLIQGEE 170
Query: 623 YYFKIKARNSAGSS 636
Y F++ A+N G S
Sbjct: 171 YSFRVSAQNEKGIS 184
>pdb|1X5Z|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Protein Tyrosine Phosphatase, Receptor Type, D
Isoform 4 Variant
Length = 115
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHV-VTPQLSYEL 211
VP PLN +S+L++W P I +Y L Y + + E+ + + P SY L
Sbjct: 17 VPGQPLNFKAEPESETSILLSWTPPRSDT--IANYELVYKDGEHGEEQRITIEPGTSYRL 74
Query: 212 TGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTL 244
GL +LY + A + G G ++ E+S +T+
Sbjct: 75 QGLKPNSLYYFRLAARSPQGLGASTAEISARTM 107
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 345 VPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDE 404
VP P + KA P +SI++SWTPP +S + + L + G E ++I S
Sbjct: 17 VPGQPLNFKAEPESETSILLSWTPP--RSDTIANYELVYKDGEHGE-EQRITIEPGTSYR 73
Query: 405 ITGLEPNSDYVISLRAFNEMGDGPQKYE-SLRTRNEPPP 442
+ GL+PNS Y L A + G G E S RT P
Sbjct: 74 LQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSSGP 112
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 570 VNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKA 629
+ L+W PP+S I+ Y ++Y + ++ + + S ++GL+P +YYF++ A
Sbjct: 34 ILLSWTPPRSDT--IANYELVYKDGEHGEE--QRITIEPGTSYRLQGLKPNSLYYFRLAA 89
Query: 630 RNSAGSSPYSSTVTWTTASDMQEAG 654
R+ G ++ +A MQ +G
Sbjct: 90 RSPQG---LGASTAEISARTMQSSG 111
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 43 STGSIEAINETLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILV-YCVLYKREGSER 101
S+G I+ I +T +P P + A S+ L W PP R + + Y ++YK
Sbjct: 5 SSGDIQVITQT-GVPGQPLNFKAEPESETSILLSWTPP---RSDTIANYELVYKDGEHGE 60
Query: 102 ERAYNATARVEAIIQGLHPNTSYTFRVVA 130
E+ +QGL PN+ Y FR+ A
Sbjct: 61 EQRITIEPGTSYRLQGLKPNSLYYFRLAA 89
>pdb|2X11|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain In
Complex With Ephrin A5 Receptor Binding Domain
Length = 545
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 80/203 (39%), Gaps = 17/203 (8%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRG-EILVYCVLYKREGSERERAYNATA------ 109
PSAP ++A+ +G + V LRW PP G E +VY V ++ E A
Sbjct: 331 PSAPHYLTAVGMGAK-VELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSE 389
Query: 110 ------RVEAIIQGLHPNTSYTFRVVAYNXXXXXXXXXXXPVKTEPEDHVPSPPLNVNIP 163
R + L P+ +YTF V A N +T + P V +
Sbjct: 390 PPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRS--FRTASVSINQTEPPKVRLE 447
Query: 164 VVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVV-TPQLSYELTGLSHFTLYSI 222
T+SL V+W P + Y + Y ++ S +V T S L L+ T Y +
Sbjct: 448 GRSTTSLSVSWSIPPPQQSRVWKYEVTYRKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLV 507
Query: 223 WVVAHNGNGAGTTSQELSVQTLS 245
V A G G S+ QTLS
Sbjct: 508 QVQALTQEGQGAGSKVHEFQTLS 530
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 47/113 (41%), Gaps = 24/113 (21%)
Query: 551 PASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVG--- 607
P SAP LT V G + V L W PP+ + G+ I+YS W E G
Sbjct: 330 PPSAPHYLTAV---GMGAKVELRWTPPQDSGGRED---IVYSVTCE-QCWPESGECGPCE 382
Query: 608 ------------DKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTAS 648
+ S V LEP Y F ++ARN G S ++ ++ TAS
Sbjct: 383 ASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARN--GVSGLVTSRSFRTAS 433
>pdb|3FL7|A Chain A, Crystal Structure Of The Human Ephrin A2 Ectodomain
Length = 536
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 80/203 (39%), Gaps = 17/203 (8%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRG-EILVYCVLYKREGSERERAYNATA------ 109
PSAP ++A+ +G + V LRW PP G E +VY V ++ E A
Sbjct: 334 PSAPHYLTAVGMGAK-VELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSE 392
Query: 110 ------RVEAIIQGLHPNTSYTFRVVAYNXXXXXXXXXXXPVKTEPEDHVPSPPLNVNIP 163
R + L P+ +YTF V A N +T + P V +
Sbjct: 393 PPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRS--FRTASVSINQTEPPKVRLE 450
Query: 164 VVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHV-VTPQLSYELTGLSHFTLYSI 222
T+SL V+W P + Y + Y ++ S +V T S L L+ T Y +
Sbjct: 451 GRSTTSLSVSWSIPPPQQSRVWKYEVTYRKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLV 510
Query: 223 WVVAHNGNGAGTTSQELSVQTLS 245
V A G G S+ QTLS
Sbjct: 511 QVQALTQEGQGAGSKVHEFQTLS 533
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 47/113 (41%), Gaps = 24/113 (21%)
Query: 551 PASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVG--- 607
P SAP LT V G + V L W PP+ + G+ I+YS W E G
Sbjct: 333 PPSAPHYLTAV---GMGAKVELRWTPPQDSGGRED---IVYSVTCE-QCWPESGECGPCE 385
Query: 608 ------------DKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTAS 648
+ S V LEP Y F ++ARN G S ++ ++ TAS
Sbjct: 386 ASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARN--GVSGLVTSRSFRTAS 436
>pdb|2X10|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain
Length = 545
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 79/203 (38%), Gaps = 17/203 (8%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRG-EILVYCVLYKREGSERERAYNATA------ 109
PSAP ++A+ G + V LRW PP G E +VY V ++ E A
Sbjct: 331 PSAPHYLTAVGXGAK-VELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSE 389
Query: 110 ------RVEAIIQGLHPNTSYTFRVVAYNXXXXXXXXXXXPVKTEPEDHVPSPPLNVNIP 163
R + L P+ +YTF V A N +T + P V +
Sbjct: 390 PPHGLTRTSVTVSDLEPHXNYTFTVEARNGVSGLVTSRS--FRTASVSINQTEPPKVRLE 447
Query: 164 VVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVV-TPQLSYELTGLSHFTLYSI 222
T+SL V+W P + Y + Y ++ S +V T S L L+ T Y +
Sbjct: 448 GRSTTSLSVSWSIPPPQQSRVWKYEVTYRKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLV 507
Query: 223 WVVAHNGNGAGTTSQELSVQTLS 245
V A G G S+ QTLS
Sbjct: 508 QVQALTQEGQGAGSKVHEFQTLS 530
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 47/113 (41%), Gaps = 24/113 (21%)
Query: 551 PASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVG--- 607
P SAP LT V G + V L W PP+ + G+ I+YS W E G
Sbjct: 330 PPSAPHYLTAV---GXGAKVELRWTPPQDSGGRED---IVYSVTCE-QCWPESGECGPCE 382
Query: 608 ------------DKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTAS 648
+ S V LEP Y F ++ARN G S ++ ++ TAS
Sbjct: 383 ASVRYSEPPHGLTRTSVTVSDLEPHXNYTFTVEARN--GVSGLVTSRSFRTAS 433
>pdb|1TTF|A Chain A, The Three-Dimensional Structure Of The Tenth Type Iii
Module Of Fibronectin: An Insight Into Rgd-Mediated
Interactions
pdb|1TTG|A Chain A, The Three-Dimensional Structure Of The Tenth Type Iii
Module Of Fibronectin: An Insight Into Rgd-Mediated
Interactions
Length = 94
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 345 VPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDE 404
V D+P L+ P+S+++SW PA + VR + + +G+ + V++ +S
Sbjct: 1 VSDVPRDLEVVAATPTSLLISWDAPA---VTVRYYRITYGETGGNSPVQEFTVPGSKSTA 57
Query: 405 -ITGLEPNSDYVISLRAFNEMGDGP 428
I+GL+P DY I++ A GD P
Sbjct: 58 TISGLKPGVDYTITVYAVTGRGDSP 82
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 555 PRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNV 614
PRDL VV+ P+ + ++W P + Y I Y E +V G K + +
Sbjct: 5 PRDLEVVAAT--PTSLLISWDAPAV---TVRYYRITYGETGGNSPVQEFTVPGSKSTATI 59
Query: 615 RGLEPGRIYYFKIKARNSAGSSPYSS 640
GL+PG Y + A G SP SS
Sbjct: 60 SGLKPGVDYTITVYAVTGRGDSPASS 85
>pdb|2CRZ|A Chain A, Solution Structure Of The Fifth Fniii Domain Of Human
Fibronectin Type Iii Domain Containing Protein 3a
Length = 110
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 570 VNLNWQPPKSANGQ-ISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIK 628
+ L W PP G IS Y++ S P E G ++ V L PG+ Y F+++
Sbjct: 26 IQLRWGPPLVDGGSPISCYSVEMS--PIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLR 83
Query: 629 ARNSAGSSPYSSTVTWTTA 647
A N G P+S TTA
Sbjct: 84 AANKMGFGPFSEKCDITTA 102
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 71 RSVALRWLPPTLPRGE-ILVYCVLYKREGSERERAYNATARVEAIIQGLHPNTSYTFRVV 129
+ + LRW PP + G I Y V + R + VE + L P +Y+FR+
Sbjct: 24 KEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLR 83
Query: 130 AYN 132
A N
Sbjct: 84 AAN 86
>pdb|2CK2|A Chain A, Structure Of Core-Swapped Mutant Of Fibronectin
pdb|2CK2|B Chain B, Structure Of Core-Swapped Mutant Of Fibronectin
Length = 96
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 345 VPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQI-LDVKQRSD 403
V D+P ++ P+S ++SW PA + +R L +G+ + V++I L + +
Sbjct: 1 VSDVPRDIEVVAVTPTSALISWDAPA---VTIRYIRLTYGETGGNSPVQEITLPGSKSTY 57
Query: 404 EITGLEPNSDYVISLRAFNEMGDGP--QKYESLRTRNE 439
I+GL+P +DY ++L + GD P K S+ R E
Sbjct: 58 TISGLKPGTDYTVTLYSVTGRGDSPASSKPASINFRTE 95
>pdb|1WFO|A Chain A, The Eighth Fn3 Domain Of Human Sidekick-2
Length = 130
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 144 PVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYY---LEEDTSVER 200
P+ D VP PP+ + P V T+S+ + W+ P NG I Y + + +
Sbjct: 18 PILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATV 77
Query: 201 HVVTPQL-SYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQT 243
V+ P Y TGL ++Y + A G G ++ L V T
Sbjct: 78 EVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTT 121
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 38/102 (37%), Gaps = 10/102 (9%)
Query: 242 QTLSDKPSEPPA--------NSITVRWQPPSRRGQNGIITGYKLRYXXXXXXXXXGETVT 293
+TL D P P S+ + WQPP+ NGII Y++ +
Sbjct: 22 RTLDDVPGPPMGILFPEVRTTSVRLIWQPPA--APNGIILAYQITHRLNTTTANTATVEV 79
Query: 294 TAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
A R Y TGL + Y ++ A G G A + T
Sbjct: 80 LAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTT 121
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 570 VNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVG-DKMSTNVRGLEPGRIYYFKIK 628
V L WQPP + NG I Y I + + T V+ GL+P +Y F+I
Sbjct: 44 VRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRIT 103
Query: 629 ARNSAG 634
A+ G
Sbjct: 104 AQTRKG 109
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 19/86 (22%)
Query: 56 LPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREG-----------SERERA 104
+P P + V SV L W PP P G IL Y + ++ + R
Sbjct: 27 VPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSARQ 86
Query: 105 YNATARVEAIIQGLHPNTSYTFRVVA 130
Y AT GL P + Y FR+ A
Sbjct: 87 YTAT--------GLKPESVYLFRITA 104
>pdb|2DJS|A Chain A, Solution Structures Of The Fn3 Domain Of Human Ephrin
Type- B Receptor 1
Length = 108
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 570 VNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMST-NVRGLEPGRIYYFKIK 628
+ L+W P+ NG I Y I Y + + S+ + +T + GL PG +Y +++
Sbjct: 24 ITLSWPQPEQPNGIILDYEIRYYEKEHNE--FNSSMARSQTNTARIDGLRPGMVYVVQVR 81
Query: 629 ARNSAGSSPYSSTVTWTTASD 649
AR AG +S + + T +D
Sbjct: 82 ARTVAGYGKFSGKMCFQTLTD 102
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 55 TLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCV-LYKREGSERERAYNATARVEA 113
T+P Q VSA M RS+ L W P P G IL Y + Y++E +E + + A
Sbjct: 10 TVPIMHQ-VSATM---RSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTA 65
Query: 114 IIQGLHPNTSYTFRVVA 130
I GL P Y +V A
Sbjct: 66 RIDGLRPGMVYVVQVRA 82
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 169 SLLVTWEKPTVTNGEIKHYTL-YYLEEDTSVERHVVTPQL-SYELTGLSHFTLYSIWVVA 226
S+ ++W +P NG I Y + YY +E + Q + + GL +Y + V A
Sbjct: 23 SITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTARIDGLRPGMVYVVQVRA 82
Query: 227 HNGNGAGTTSQELSVQTLSD 246
G G S ++ QTL+D
Sbjct: 83 RTVAGYGKFSGKMCFQTLTD 102
>pdb|1WFN|A Chain A, The Fourth Fn3 Domain Of Human Sidekick-2
Length = 119
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 9/107 (8%)
Query: 150 EDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLE---EDTSVERHVVTPQ 206
+ VP P +++ + +SL V+W++P NG + Y + + E +T V ++
Sbjct: 14 HEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHYLPNVT 73
Query: 207 LSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDK--PSEP 251
L Y +TGL+ T Y+I V A G G ++S T+S PS P
Sbjct: 74 LEYRVTGLTALTTYTIEVAAMTSKGQG----QVSASTISSGVPPSGP 116
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 249 SEPPANSITVRWQPPSRRGQNGIITGYKLRYXXXXXXXXXGETVTTAGDRRLYVITGLNK 308
SE S+ V WQ P + NGI+TGY++ + T Y +TGL
Sbjct: 27 SEILDTSLKVSWQEPGEK--NGILTGYRISWEEYNRTNTR-VTHYLPNVTLEYRVTGLTA 83
Query: 309 STTYQIKLWAMNVNGSG 325
TTY I++ AM G G
Sbjct: 84 LTTYTIEVAAMTSKGQG 100
>pdb|2EDY|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 103
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 568 SLVNLNWQPPKSA--NGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYF 625
S L W PP A NG+I YT+++ D N+ Q ++ + + + GL+P Y
Sbjct: 23 STTELAWDPPVLAERNGRIISYTVVFR-DINSQQELQNITTDTRFT--LTGLKPDTTYDI 79
Query: 626 KIKARNSAGSSPYSSTV 642
K++A S GS P S ++
Sbjct: 80 KVRAWTSKGSGPLSPSI 96
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 157 PLNVNIPVVGTSSLLVTWEKPTVT--NGEIKHYTLYYLEEDTSVERHVVTPQLSYELTGL 214
P N+++ + TS+ + W+ P + NG I YT+ + + ++ E +T + LTGL
Sbjct: 12 PQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNITTDTRFTLTGL 71
Query: 215 SHFTLYSIWVVAHNGNGAGTTSQELSVQTL 244
T Y I V A G+G S + +T+
Sbjct: 72 KPDTTYDIKVRAWTSKGSGPLSPSIQSRTM 101
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 260 WQPPSRRGQNGIITGYKLRYXXXXXXXXXGETVTTAGDRRLYVITGLNKSTTYQIKLWAM 319
W PP +NG I Y + + + +TT D R + +TGL TTY IK+ A
Sbjct: 29 WDPPVLAERNGRIISYTVVFRDINSQQEL-QNITT--DTR-FTLTGLKPDTTYDIKVRAW 84
Query: 320 NVNGSGP 326
GSGP
Sbjct: 85 TSKGSGP 91
>pdb|3L5H|A Chain A, Crystal Structure Of The Full Ectodomain Of Human Gp130:
New Insights Into The Molecular Assembly Of Receptor
Complexes
Length = 589
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 84/385 (21%), Positives = 140/385 (36%), Gaps = 85/385 (22%)
Query: 154 PSPPLNVNI--PVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHV-----VTPQ 206
P+PP N+++ +S L +TW P++ + I Y + Y +D S + + +
Sbjct: 199 PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 258
Query: 207 LSYELTGLSHFTLYSIWVVAHNGNGAG---TTSQELSVQTLSDKPSEPPA---------- 253
S+ + L FT Y + +G G S+E S T D+PS+ P+
Sbjct: 259 SSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHT 318
Query: 254 ---NSITVRWQPPSRRGQNGIITGYKL------RYXXXXXXXXXGETVTTAGDRRLYVIT 304
++ + W+ NG I Y++ + TV DR L +T
Sbjct: 319 QGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKLTVNLTNDRYLATLT 378
Query: 305 GLN---KSTTYQIKLWAMNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSS 361
N KS + + A + + P D LKA P +
Sbjct: 379 VRNLVGKSDAAVLTIPACDFQATHPVMD----------------------LKAFPKD-NM 415
Query: 362 IIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDEIT------GLEPNSDYV 415
+ V WT P + V+ + L W V + I D +Q + L + Y+
Sbjct: 416 LWVEWTTPRES---VKKYILEW--CVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYL 470
Query: 416 ISLRAFNEMGDGPQKYESLRT--RNEPPPQAPKVLIPPMGLKSEVLSPYSMRISWIDTTL 473
I++ DGP ES++ + PP + P V +G VL W
Sbjct: 471 ITVTPV--YADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVL-------EW----- 516
Query: 474 PDQFQQHGEEG--RHYLVRYTHLLG 496
DQ + G R+Y + Y ++G
Sbjct: 517 -DQLPVDVQNGFIRNYTIFYRTIIG 540
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 15/91 (16%)
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKE---SEWSMIVLNTTQEAAPASAPRDLTVVSKEGD 566
+S + DL+P T+Y F ++ ++ + S+WS T E P+ AP + D
Sbjct: 259 SSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKI----D 314
Query: 567 PS------LVNLNWQ--PPKSANGQISGYTI 589
PS V L W+ PP ANG+I Y +
Sbjct: 315 PSHTQGYRTVQLVWKTLPPFEANGKILDYEV 345
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 555 PRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIE---ESVVGDKMS 611
P +L+V++ E S++ L W P + I Y I Y + + W + E + S
Sbjct: 202 PHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTK-DASTWSQIPPEDTASTRSS 260
Query: 612 TNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQEAGGI 656
V+ L+P Y F+I+ G +S W+ +EA GI
Sbjct: 261 FTVQDLKPFTEYVFRIRCMKEDGKGYWSD---WS-----EEASGI 297
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 77/400 (19%), Positives = 147/400 (36%), Gaps = 43/400 (10%)
Query: 57 PSAPQSVSAIMVGPRSVALR--WLPPTLPRGEILVYCVLYKREGSERERAY----NATAR 110
P+ P ++S I S L+ W P++ IL Y + Y+ + + A+ R
Sbjct: 199 PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 258
Query: 111 VEAIIQGLHPNTSYTFRVVA-----------YNXXXXXXXXXXXPVKTEPEDHVPSPPLN 159
+Q L P T Y FR+ ++ P K P P +
Sbjct: 259 SSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKA-PSFWYKIDPSH 317
Query: 160 VNIPVVGTSSLLVTWEK--PTVTNGEIKHYTLYYLEEDTSVERHVVTP-QLSYELTGLSH 216
G ++ + W+ P NG+I Y + + ++ + V +L+ LT +
Sbjct: 318 TQ----GYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKLTVNLTNDRY 373
Query: 217 FTLYSIWVVAHNGNGAGTTSQELSVQT---LSDKPSEPPANSITVRWQPPSRRGQNGIIT 273
++ + + A T Q + D + P N + V W P + I+
Sbjct: 374 LATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILE 433
Query: 274 GYKLRYXXXXXXXXXGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSA 333
L E T R Y+ L +S Y I + + +G G S
Sbjct: 434 WCVLSDKAPCITDWQQEDGTV---HRTYLRGNLAESKCYLITVTPVYADGPG------SP 484
Query: 334 ETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWTP-PAD-QSIMVRGFTLGWGKGVPDEF 391
E+ L + P +++ + G + ++ W P D Q+ +R +T+ + + +E
Sbjct: 485 ESIKAYLKQ-APPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNET 543
Query: 392 VKQILDVKQRSDEITGLEPNSDYVISLRAFNEMG--DGPQ 429
+ D ++ L ++ Y++ + A+ + G DGP+
Sbjct: 544 AVNV-DSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPE 582
>pdb|1ZLG|A Chain A, Solution Structure Of The Extracellular Matrix Protein
Anosmin-1
Length = 680
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 24/152 (15%)
Query: 290 ETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGS----GPATDWFSAETFSQDLGEFTV 345
+TV D R+ +T + S YQ ++ A+NV+G+ P+ + S++ + +
Sbjct: 215 QTVAQTTDERVQ-LTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSK-------DPSA 266
Query: 346 PDIPASLK-----ARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFV-------K 393
P PA+L+ G ++ + W P + I V + + W V + + +
Sbjct: 267 PPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRR 326
Query: 394 QILDVKQRSDEITGLEPNSDYVISLRAFNEMG 425
+ D Q S + L+P+ DYV+ L+A G
Sbjct: 327 KTTDGFQNSVILEKLQPDCDYVVELQAITYWG 358
>pdb|3LOH|E Chain E, Structure Of The Insulin Receptor Ectodomain, Including Ct
P
Length = 917
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 5/137 (3%)
Query: 507 ANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLT--VVSKE 564
N S+ I+ LR T Y ++ E + + P + D+ V +
Sbjct: 763 VNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEI 822
Query: 565 GDPSLVNLNWQPPKSANGQISGYTILYS--SDPNTDQWIEESVVGDKMSTNVRGLEPGRI 622
+ ++V+L WQ PK NG I Y + Y D + +RGL PG
Sbjct: 823 FENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN- 881
Query: 623 YYFKIKARNSAGSSPYS 639
Y +I+A + AG+ ++
Sbjct: 882 YSVRIRATSLAGNGSWT 898
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 23 PPNQYHLTSTTSMTASPLDTSTGS---IEAINETLTLPSAPQSVSAIMVGPRSVALRWLP 79
P QY + T +T S + G+ I + T PS P ++ + L+W P
Sbjct: 558 PWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKP 617
Query: 80 PTLPRGEILVYCVLYKREGSERE 102
P+ P G I Y V ++R+ + E
Sbjct: 618 PSDPNGNITHYLVFWERQAEDSE 640
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 517 LRPSTQYEFTVKVV------RAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLV 570
L+P TQY VK + R ++ +I + T +A S P D VS S +
Sbjct: 556 LKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQT--DATNPSVPLDPISVSNSS--SQI 611
Query: 571 NLNWQPPKSANGQISGYTILYSSDPNTDQWIE 602
L W+PP NG I+ Y + + + E
Sbjct: 612 ILKWKPPSDPNGNITHYLVFWERQAEDSELFE 643
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 114 IIQGLHPNTSYTFRV---VAYNXXXXXXXXXXXPVKTEPEDHVPSPPLNVNIPVVGTSSL 170
+++GL P T Y V V ++ + + + PS PL+ +S +
Sbjct: 552 LMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQI 611
Query: 171 LVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELTGL 214
++ W+ P+ NG I HY +++ + E +L Y L GL
Sbjct: 612 ILKWKPPSDPNGNITHYLVFWERQAEDSELF----ELDYCLKGL 651
>pdb|2DTG|E Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
Length = 897
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 5/137 (3%)
Query: 507 ANITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLT--VVSKE 564
N S+ I+ LR T Y ++ E + + P + D+ V +
Sbjct: 744 VNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEI 803
Query: 565 GDPSLVNLNWQPPKSANGQISGYTILYS--SDPNTDQWIEESVVGDKMSTNVRGLEPGRI 622
+ ++V+L WQ PK NG I Y + Y D + +RGL PG
Sbjct: 804 FENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN- 862
Query: 623 YYFKIKARNSAGSSPYS 639
Y +I+A + AG+ ++
Sbjct: 863 YSVRIRATSLAGNGSWT 879
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 23 PPNQYHLTSTTSMTASPLDTSTGS---IEAINETLTLPSAPQSVSAIMVGPRSVALRWLP 79
P QY + T +T S + G+ I + T PS P ++ + L+W P
Sbjct: 558 PWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKP 617
Query: 80 PTLPRGEILVYCVLYKREGSERE 102
P+ P G I Y V ++R+ + E
Sbjct: 618 PSDPNGNITHYLVFWERQAEDSE 640
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 517 LRPSTQYEFTVKVV------RAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLV 570
L+P TQY VK + R ++ +I + T +A S P D VS S +
Sbjct: 556 LKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQT--DATNPSVPLDPISVSNSS--SQI 611
Query: 571 NLNWQPPKSANGQISGYTILYSSDPNTDQWIE 602
L W+PP NG I+ Y + + + E
Sbjct: 612 ILKWKPPSDPNGNITHYLVFWERQAEDSELFE 643
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 114 IIQGLHPNTSYTFRV---VAYNXXXXXXXXXXXPVKTEPEDHVPSPPLNVNIPVVGTSSL 170
+++GL P T Y V V ++ + + + PS PL+ +S +
Sbjct: 552 LMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQI 611
Query: 171 LVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELTGL 214
++ W+ P+ NG I HY +++ + E +L Y L GL
Sbjct: 612 ILKWKPPSDPNGNITHYLVFWERQAEDSELF----ELDYCLKGL 651
>pdb|3O71|B Chain B, Crystal Structure Of Erk2DCC PEPTIDE COMPLEX
Length = 27
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 677 KQQAPATQINPPDLWIHHDQMELKAIE 703
K++ + PPDLWIHH++ME+K IE
Sbjct: 1 KRKGSQKDLRPPDLWIHHEEMEMKNIE 27
>pdb|2YUX|A Chain A, Solution Structure Of 3rd Fibronectin Type Three Domain Of
Slow Type Myosin-Binding Protein C
Length = 120
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 557 DLTVVSKEGDPSLVN----------LNWQPPK-SANGQISGYTILYSSDPNTDQWIEESV 605
D+ ++ + G P +V L W PPK N I+GYTI +D + +W
Sbjct: 11 DIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTI-QKADKKSMEWFTVIE 69
Query: 606 VGDKMSTNVRGLEPGRIYYFKIKARNSAGSS 636
+ S + L G YYF++ + N G S
Sbjct: 70 HYHRTSATITELVIGNEYYFRVFSENMCGLS 100
>pdb|2OCF|D Chain D, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Estradiol And The E2#23 Fn3 Monobody
Length = 121
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSD 403
+V D+P L+ P+S+++SW PA + VR + + +G+ + V++ +S
Sbjct: 27 SVSDVPTKLEVVAATPTSLLISWDAPA---VTVRYYRITYGETGGNSPVQEFTVPGSKST 83
Query: 404 E-ITGLEPNSDYVISLRAFNEM 424
I+GL+P DY I++ A +
Sbjct: 84 ATISGLKPGVDYTITVYAVTGL 105
>pdb|2DN7|A Chain A, Solution Structures Of The 6th Fn3 Domain Of Human
Receptor- Type Tyrosine-Protein Phosphatase F
Length = 107
Score = 38.1 bits (87), Expect = 0.021, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 572 LNWQPPKSANGQISGYTILY----SSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKI 627
L W PPK G++ GY + Y + PNT + + D V GL G Y F++
Sbjct: 25 LQWHPPKELPGELLGYRLQYCRADEARPNTIDFGK-----DDQHFTVTGLHKGTTYIFRL 79
Query: 628 KARNSAG 634
A+N AG
Sbjct: 80 AAKNRAG 86
Score = 36.2 bits (82), Expect = 0.075, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 249 SEPPANSITVRWQPPSRRGQNGIITGYKLRYXXXXXXXXXGETVTTAGDRRLYVITGLNK 308
S N+ ++W PP + G + GY+L+Y T+ D + + +TGL+K
Sbjct: 16 STTAMNTALLQWHPP--KELPGELLGYRLQYCRADEARP--NTIDFGKDDQHFTVTGLHK 71
Query: 309 STTYQIKLWAMNVNGSG 325
TTY +L A N G G
Sbjct: 72 GTTYIFRLAAKNRAGLG 88
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 75 LRWLPPTLPRGEILVYCVLYKREGSERERAYN-ATARVEAIIQGLHPNTSYTFRVVAYN 132
L+W PP GE+L Y + Y R R + + GLH T+Y FR+ A N
Sbjct: 25 LQWHPPKELPGELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKN 83
>pdb|1X4X|A Chain A, Solution Structure Of The 6th Fibronectin Type Iii Domain
From Human Fibronectin Type Iii Domain Containing
Protein 3
Length = 106
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%)
Query: 172 VTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQLSYELTGLSHFTLYSIWVVAHNGNG 231
V WE P ++ Y L + + S++ P LSYE+ GLS T Y V A + G
Sbjct: 26 VNWEVPLSNGTDVTEYRLEWGGVEGSMQICYCGPGLSYEIKGLSPATTYYCRVQALSVVG 85
Query: 232 AGTTSQELSVQT 243
AG S+ ++ T
Sbjct: 86 AGPFSEVVACVT 97
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 568 SLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKI 627
+ +NW+ P S ++ Y + + + ++ G +S ++GL P YY ++
Sbjct: 22 TCAQVNWEVPLSNGTDVTEYRLEWG---GVEGSMQICYCGPGLSYEIKGLSPATTYYCRV 78
Query: 628 KARNSAGSSPYSSTVTWTT 646
+A + G+ P+S V T
Sbjct: 79 QALSVVGAGPFSEVVACVT 97
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 253 ANSITVRWQPPSRRGQNGIITGYKLRYXXXXXXXXXGETVTTAGDRRLYVITGLNKSTTY 312
A V W+ P G + +T Y+L + + G Y I GL+ +TTY
Sbjct: 21 ATCAQVNWEVPLSNGTD--VTEYRLEWGGVEGSMQ----ICYCGPGLSYEIKGLSPATTY 74
Query: 313 QIKLWAMNVNGSGPATDWFSAET 335
++ A++V G+GP ++ + T
Sbjct: 75 YCRVQALSVVGAGPFSEVVACVT 97
>pdb|2DB8|A Chain A, Solution Structures Of The Fn3 Domain Of Human Tripartite
Motif Protein 9
Length = 110
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 572 LNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARN 631
L+W+ P + GY IL D N Q+ E VG + V GL Y ++KA N
Sbjct: 29 LSWKQPPLSTVPADGY-ILELDDGNGGQF-REVYVGKETMCTVDGLHFNSTYNARVKAFN 86
Query: 632 SAGSSPYSSTVTWTTA 647
G SPYS T+ T+
Sbjct: 87 KTGVSPYSKTLVLQTS 102
>pdb|3TEU|A Chain A, Crystal Structure Of Fibcon
Length = 98
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 347 DIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGW----GKGVPDEFVKQILDVKQRS 402
D P L+ +SI VSWTPP S + G+ + + G G P E + S
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTPP---SATITGYRITYTPSNGPGEPKELT---VPPSSTS 56
Query: 403 DEITGLEPNSDYVISLRAFNEMGDGP 428
ITGL P +YV+S+ A + + P
Sbjct: 57 VTITGLTPGVEYVVSVYALKDNQESP 82
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 255 SITVRWQPPSRRGQNGIITGYKLRYXXXXXXXXXGETVTTAGDRRLYVITGLNKSTTYQI 314
SITV W PPS ITGY++ Y E +T ITGL Y +
Sbjct: 17 SITVSWTPPS-----ATITGYRITYTPSNGPGEPKE-LTVPPSSTSVTITGLTPGVEYVV 70
Query: 315 KLWAMNVNGSGP 326
++A+ N P
Sbjct: 71 SVYALKDNQESP 82
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 554 APRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTN 613
AP DL V + + + ++W PP + I+GY I Y+ + E +V S
Sbjct: 4 APTDLQVTNVTD--TSITVSWTPPSAT---ITGYRITYTPSNGPGEPKELTVPPSSTSVT 58
Query: 614 VRGLEPGRIYYFKIKARNSAGSSP 637
+ GL PG Y + A SP
Sbjct: 59 ITGLTPGVEYVVSVYALKDNQESP 82
>pdb|4GO6|B Chain B, Crystal Structure Of Hcf-1 Self-Association Sequence 1
pdb|4GO6|D Chain D, Crystal Structure Of Hcf-1 Self-Association Sequence 1
Length = 232
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 116 QGLHPNTSYTFRVVAYNXXXXXXXXXXXPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWE 175
Q L P T+Y FRV N KT P P + I + L TWE
Sbjct: 51 QELQPGTAYKFRVAGINACGRGPFSEISAFKTC-LPGFPGAPCAIKISKSPDGAHL-TWE 108
Query: 176 KPTVTNGEIKHYTLY 190
P+VT+G+I Y++Y
Sbjct: 109 PPSVTSGKIIEYSVY 123
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 40/174 (22%)
Query: 512 VQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQEAAPASAPRDLTVVSKEGDPSLVN 571
++ +L+P T Y+F V + A +S I T AP + + P +
Sbjct: 48 LKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCAIKISK---SPDGAH 104
Query: 572 LNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRG-LEPGRIYY------ 624
L W+PP +G+I Y++ + I+ S G ++ ++ L R+Y
Sbjct: 105 LTWEPPSVTSGKIIEYSVYLA--------IQSSQAGGELKSSTPAQLAFXRVYCGPSPSC 156
Query: 625 ---------------------FKIKARNSAGSSPYSSTVTWTTASDMQEAGGIP 657
F+I ARN G P ++ V W + +G P
Sbjct: 157 LVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGP-ATQVRWLQETSKDSSGTKP 209
>pdb|1FNA|A Chain A, Crystal Structure Of The Tenth Type Iii Cell Adhesion
Module Of Human Fibronectin
Length = 91
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 359 PSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDE-ITGLEPNSDYVIS 417
P+S+++SW PA + VR + + +G+ + V++ +S I+GL+P DY I+
Sbjct: 10 PTSLLISWDAPA---VTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTIT 66
Query: 418 LRAFNEMGDGP 428
+ A GD P
Sbjct: 67 VYAVTGRGDSP 77
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 556 RDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVR 615
RDL VV+ P+ + ++W P + Y I Y E +V G K + +
Sbjct: 1 RDLEVVAAT--PTSLLISWDAPAV---TVRYYRITYGETGGNSPVQEFTVPGSKSTATIS 55
Query: 616 GLEPGRIYYFKIKARNSAGSSPYSS 640
GL+PG Y + A G SP SS
Sbjct: 56 GLKPGVDYTITVYAVTGRGDSPASS 80
>pdb|2E7H|A Chain A, Solution Structure Of The Second Fn3 Domain From Human
Ephrin Type-B Receptor 4
Length = 109
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Query: 567 PSLVNLNWQPPKSANGQISGYTILY----SSDPNTDQWIEESVVGDKMSTNVRGLEPGRI 622
PS ++L W P++ +G + Y + Y + P++ ++++ S + +RGL+ G
Sbjct: 21 PSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTS----ENRAELRGLKRGAS 76
Query: 623 YYFKIKARNSAGSSPY 638
Y +++AR+ AG P+
Sbjct: 77 YLVQVRARSEAGYGPF 92
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 58 SAPQSVSAIMV---GPRSVALRWLPPTLPRGEILVYCVLYKREGSERERA--YNATARVE 112
S P +VS I V P S++L W P P G +L Y V Y +G+E + + T+
Sbjct: 6 SGPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENR 65
Query: 113 AIIQGLHPNTSYTFRVVA 130
A ++GL SY +V A
Sbjct: 66 AELRGLKRGASYLVQVRA 83
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 156 PPLNVNIPVVGTS--SLLVTWEKPTVTNGEIKHYTLYYLE---EDTSVERHVVTPQLSYE 210
PP +I V +S SL + W P +G + Y + Y E E S R + T + E
Sbjct: 8 PPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAE 67
Query: 211 LTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSD 246
L GL Y + V A + G G QE QT D
Sbjct: 68 LRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLD 103
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 359 PSSIIVSWTPPADQSIMVRGFTLGWG-KGVPDEFVKQILDVKQRSDEITGLEPNSDYVIS 417
PSS+ ++W P S V + + + KG + L + E+ GL+ + Y++
Sbjct: 21 PSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAELRGLKRGASYLVQ 80
Query: 418 LRAFNEMGDGP 428
+RA +E G GP
Sbjct: 81 VRARSEAGYGP 91
>pdb|2VKW|A Chain A, Human Ncam, Fn3 Domains 1 And 2
pdb|2VKW|B Chain B, Human Ncam, Fn3 Domains 1 And 2
Length = 209
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 8/152 (5%)
Query: 87 ILVYCVLYKREGSE--RERAYNAT-ARVEAI--IQGLHPNTSYTFRVVAYNXXXXXXXXX 141
IL Y ++ G E + Y+A A +E I I GL P T+Y R+ A N
Sbjct: 39 ILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISA 98
Query: 142 XXPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERH 201
KT+P +P L + G +S+ V K I+HY + Y + +
Sbjct: 99 ASEFKTQPVREPSAPKLEGQMGEDG-NSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPE 157
Query: 202 VVTPQLSYE--LTGLSHFTLYSIWVVAHNGNG 231
+ P S L L Y ++VVA N G
Sbjct: 158 IRLPSGSDHVMLKSLDWNAEYEVYVVAENQQG 189
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 63/154 (40%), Gaps = 18/154 (11%)
Query: 397 DVKQRSDE----ITGLEPNSDYVISLRAFNEMGDGPQKYES-LRTRNEPPPQAPKVLIPP 451
D K+ S E I GL+P + Y + L A N G G S +T+ P APK L
Sbjct: 60 DAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPK-LEGQ 118
Query: 452 MGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITS 511
MG S++++ I G RHYLVRY L P + + +
Sbjct: 119 MGEDGN-----SIKVNLIKQ------DDGGSPIRHYLVRYRALSSEWKPEIR-LPSGSDH 166
Query: 512 VQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNT 545
V + L + +YE V + +S+ + V T
Sbjct: 167 VMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRT 200
>pdb|2V5Y|A Chain A, Crystal Structure Of The Receptor Protein Tyrosine
Phosphatase Mu Ectodomain
Length = 731
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 102/259 (39%), Gaps = 37/259 (14%)
Query: 398 VKQRSDEITGLEPNSDYVIS--LRAFNEMGDG-PQKYESLRTRNEPPPQAPKVLIPPMGL 454
V S +I L+P+++Y IS L E G G P RT+ P + P+ L
Sbjct: 313 VDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKL------ 366
Query: 455 KSEVLSPYSMRIS--WIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITSV 512
EV+ S +I+ W P + + V Y + +G + ++ + +
Sbjct: 367 --EVVEVKSRQITIRW----EPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENS 420
Query: 513 Q----INDLRPSTQYEFTVKVVRAKKESEWSMIVLNTTQE---AAPASAPRDLTVVSKEG 565
I +L P T + ++ + E +++ T ++ A P + + T K
Sbjct: 421 HPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQTDEDLPGAVPTESIQGSTFEEK-- 478
Query: 566 DPSLVNLNWQPPKSANGQISGYTILY----SSDPNTD---QWIEESVVGDKMSTNVRGLE 618
+ L W+ P G I+ Y I Y S DP D Q S +G++ GL
Sbjct: 479 ----IFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLY 534
Query: 619 PGRIYYFKIKARNSAGSSP 637
PG Y F I+A + G P
Sbjct: 535 PGTTYSFTIRASTAKGFGP 553
>pdb|1WF5|A Chain A, Solution Structure Of The First Fn3 Domain Of Sidekick-2
Protein
Length = 121
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 570 VNLNWQPPKSANGQISGYTILYSSDPNTDQW--IEESVVGDKMSTNVRGLEPGRIYYFKI 627
+NL W P N + Y + S N W + SV S V+GL P R Y F++
Sbjct: 36 INLTWTKPFDGNSPLIRYILEMSE--NNAPWTVLLASVDPKATSVTVKGLVPARSYQFRL 93
Query: 628 KARNSAGSSPYS 639
A N G +S
Sbjct: 94 CAVNDVGKGQFS 105
>pdb|1UEN|A Chain A, Solution Structure Of The Third Fibronectin Iii Domain Of
Human Kiaa0343 Protein
Length = 125
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 11/108 (10%)
Query: 548 EAAPASAPRDLTVVSKEGDPSLVNLNWQPP--KSANGQISGYTILY----SSDPNTDQWI 601
E P AP ++ V + +L ++W P KS G + GY I Y SS + I
Sbjct: 11 EDLPMVAPGNVRV--NVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHI 68
Query: 602 EESVV---GDKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTT 646
E+ ++ G K + GLEP Y ++ N G P S + T
Sbjct: 69 EKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNT 116
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 157 PLNVNIPVVGTSSLLVTWEKPTVTN--GEIKHYTLYYLEEDTSVER---HVVTPQLSYE- 210
P NV + VV ++ V W+ + + G ++ Y +YY + +S +R H+ L+++
Sbjct: 18 PGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQG 77
Query: 211 ------LTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQT 243
L GL F+ Y++ V NG G G S + T
Sbjct: 78 SKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNT 116
>pdb|1X3D|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Fibronectin Type-Iii Domain Containing Protein 3a
Length = 118
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%)
Query: 346 PDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDEI 405
PDIP + +S+ + W P+D ++ F L W +G + Q Q+ +I
Sbjct: 18 PDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKI 77
Query: 406 TGLEPNSDYVISLRAFNEMG 425
T L P L A N+ G
Sbjct: 78 TKLSPAMGCKFRLSARNDYG 97
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 570 VNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKA 629
+ L W+ P +I + + + ++ + +G + + L P F++ A
Sbjct: 34 LTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQ-CYMGSQKQFKITKLSPAMGCKFRLSA 92
Query: 630 RNSAGSSPYSSTVTWTTA 647
RN G+S +S V + T+
Sbjct: 93 RNDYGTSGFSEEVLYYTS 110
>pdb|2YRZ|A Chain A, Solution Structure Of The Fibronectin Type Iii Domain Of
Human Integrin Beta-4
Length = 118
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 451 PMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANIT 510
P L L P S+R+SW + Q Y V Y L G R N T
Sbjct: 21 PTRLVFSALGPTSLRVSWQEPRCERPLQ-------GYSVEYQLLNGGELHRLNIPNPAQT 73
Query: 511 SVQINDLRPSTQYEFTVKVVRAKKESEWSM----IVLNTTQEAAPASA 554
SV + DL P+ Y F VRA+ + W ++ +Q + P+S
Sbjct: 74 SVVVEDLLPNHSYVFR---VRAQSQEGWGREREGVITIESQVSGPSSG 118
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 345 VPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVK-QILDVKQRSD 403
VPD P L GP+S+ VSW P + + +G+++ + E + I + Q S
Sbjct: 17 VPDTPTRLVFSALGPTSLRVSWQEPRCERPL-QGYSVEYQLLNGGELHRLNIPNPAQTSV 75
Query: 404 EITGLEPNSDYVISLRAFNEMGDGPQK 430
+ L PN YV +RA ++ G G ++
Sbjct: 76 VVEDLLPNHSYVFRVRAQSQEGWGRER 102
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 53 TLTLPSAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKR-EGSERERAYNAT-AR 110
T +P P + +GP S+ + W P R + Y V Y+ G E R A+
Sbjct: 14 TAGVPDTPTRLVFSALGPTSLRVSWQEPRCER-PLQGYSVEYQLLNGGELHRLNIPNPAQ 72
Query: 111 VEAIIQGLHPNTSYTFRVVA 130
+++ L PN SY FRV A
Sbjct: 73 TSVVVEDLLPNHSYVFRVRA 92
>pdb|2VKX|A Chain A, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|B Chain B, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|C Chain C, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|D Chain D, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|E Chain E, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|F Chain F, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
Length = 209
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 60/152 (39%), Gaps = 8/152 (5%)
Query: 87 ILVYCVLYKREGSE--RERAYNAT-ARVEAI--IQGLHPNTSYTFRVVAYNXXXXXXXXX 141
IL Y ++ G E + Y+A A +E I I GL P T+Y R+ A N
Sbjct: 39 ILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISA 98
Query: 142 XXPVKTEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERH 201
KT+P +P L G +S+ V K I+HY + Y + +
Sbjct: 99 ASEFKTQPVREPSAPKLEGQRGEDG-NSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPE 157
Query: 202 VVTPQLSYE--LTGLSHFTLYSIWVVAHNGNG 231
+ P S L L Y ++VVA N G
Sbjct: 158 IRLPSGSDHVMLKSLDWNAEYEVYVVAENQQG 189
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 18/154 (11%)
Query: 397 DVKQRSDE----ITGLEPNSDYVISLRAFNEMGDGPQKYES-LRTRNEPPPQAPKVLIPP 451
D K+ S E I GL+P + Y + L A N G G S +T+ P APK+
Sbjct: 60 DAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKL---- 115
Query: 452 MGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINANITS 511
G + E S++++ I G RHYLVRY L P + + +
Sbjct: 116 EGQRGE--DGNSIKVNLIKQ------DDGGSPIRHYLVRYRALSSEWKPEIR-LPSGSDH 166
Query: 512 VQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNT 545
V + L + +YE V + +S+ + V T
Sbjct: 167 VMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRT 200
>pdb|1P9M|A Chain A, Crystal Structure Of The Hexameric Human Il-6/il-6 Alpha
Receptor/gp130 Complex
Length = 299
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 555 PRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIE---ESVVGDKMS 611
P +L+V++ E S++ L W P + I Y I Y + + W + E + S
Sbjct: 203 PHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTK-DASTWSQIPPEDTASTRSS 261
Query: 612 TNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQEAGGI 656
V+ L+P Y F+I+ G +S W+ +EA GI
Sbjct: 262 FTVQDLKPFTEYVFRIRCMKEDGKGYWSD---WS-----EEASGI 298
>pdb|1I1R|A Chain A, Crystal Structure Of A CytokineRECEPTOR COMPLEX
Length = 303
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 555 PRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIE---ESVVGDKMS 611
P +L+V++ E S++ L W P + I Y I Y + + W + E + S
Sbjct: 203 PHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRT-KDASTWSQIPPEDTASTRSS 261
Query: 612 TNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQEAGGI 656
V+ L+P Y F+I+ G +S W+ +EA GI
Sbjct: 262 FTVQDLKPFTEYVFRIRCMKEDGKGYWSD---WS-----EEASGI 298
>pdb|1V5J|A Chain A, Solution Structure Of Rsgi Ruh-008, Fn3 Domain In Human
Cdna
Length = 108
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 60 PQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYN---ATARVEAIIQ 116
P+ + A+ PR V L W PP L + Y VL R+GS+ + A E ++
Sbjct: 11 PRGLVAVRT-PRGVLLHWDPPELVPKRLDGY-VLEGRQGSQGWEVLDPAVAGTETELLVP 68
Query: 117 GLHPNTSYTFRVVAY 131
GL + Y FR+VA+
Sbjct: 69 GLIKDVLYEFRLVAF 83
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 555 PRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNV 614
PR L V P V L+W PP+ ++ GY + + ++ +V G + V
Sbjct: 11 PRGLVAVRT---PRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETELLV 67
Query: 615 RGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTAS 648
GL +Y F++ A + S S+T +T+
Sbjct: 68 PGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSG 101
>pdb|3K2M|C Chain C, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
pdb|3K2M|D Chain D, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
Length = 101
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQI-LDVKQRS 402
+V +P L+ P+S+++SW P S V + + +G+ + V++ + +
Sbjct: 3 SVSSVPTKLEVVAATPTSLLISWDAPMSSS-SVYYYRITYGETGGNSPVQEFTVPYSSST 61
Query: 403 DEITGLEPNSDYVISLRAFNEMGDG 427
I+GL P DY I++ A+ E G
Sbjct: 62 ATISGLSPGVDYTITVYAWGEDSAG 86
>pdb|2W1N|A Chain A, Cohesin And Fibronectin Type-Iii Double Module Construct
From The Clostridium Perfringens Glycoside Hydrolase
Gh84c
Length = 238
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 147 TEPEDHVPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHVVTPQ 206
T PE V +P + + ++ VTW +P T G ++ Y LY +D + +
Sbjct: 145 TSPEI-VVNPVRDFKASEINKKNVTVTWTEPETTEG-LEGYILY---KDGKKVAEIGKDE 199
Query: 207 LSYELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQT 243
SY L+ T+Y+ + A NG ++ + L+++T
Sbjct: 200 TSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRT 236
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 235 TSQELSVQTLSD-KPSEPPANSITVRW-QPPSRRGQNGIITGYKLRYXXXXXXXXXGETV 292
TS E+ V + D K SE ++TV W +P + G G I YK G+ V
Sbjct: 145 TSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEGLEGYIL-YK-----------DGKKV 192
Query: 293 TTAG-DRRLYVITGLNKSTTYQIKLWAMNVNG 323
G D Y LN+ T Y K+ A NG
Sbjct: 193 AEIGKDETSYTFKKLNRHTIYNFKIAAKYSNG 224
>pdb|2YUW|A Chain A, Solution Structure Of 2nd Fibronectin Domain Of Slow Type
Myosin-Binding Protein C
Length = 110
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 570 VNLNWQPPKSANGQ-ISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIK 628
V + W+PP + GY + Y + D + + DK + GL + ++K
Sbjct: 24 VTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVK 83
Query: 629 ARNSAGSS 636
A N+AG+S
Sbjct: 84 AVNAAGAS 91
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 17/90 (18%)
Query: 239 LSVQTLSDKPSEPPANSITVRWQPPSRRGQNGIITGYKLRYXXXXXXXXXGETVTTAG-- 296
L+V +++D ++T+RW+PP G G + GY L Y E A
Sbjct: 14 LTVDSVTD-------TTVTMRWRPPDHIGAAG-LDGYVLEYCFEGT-----EDWIVANKD 60
Query: 297 --DRRLYVITGLNKSTTYQIKLWAMNVNGS 324
D+ + ITGL +++ A+N G+
Sbjct: 61 LIDKTKFTITGLPTDAKIFVRVKAVNAAGA 90
>pdb|2DM4|A Chain A, Solution Structure Of The Second Fn3 Domain Of Human
SorlaLR11
Length = 108
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 58 SAPQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAIIQG 117
S P+ ++VG W PP G I Y V Y R GS+ + A + I+
Sbjct: 17 SLPREAEGVIVG------HWAPPIHTHGLIREYIVEYSRSGSKMWASQRAASNFTE-IKN 69
Query: 118 LHPNTSYTFRVVA 130
L NT YT RV A
Sbjct: 70 LLVNTLYTVRVAA 82
>pdb|1PVH|A Chain A, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Gp130
pdb|1PVH|C Chain C, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Gp130
Length = 201
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 555 PRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIE---ESVVGDKMS 611
P +L+V++ E S++ L W P + I Y I Y + + W + E + S
Sbjct: 103 PHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTK-DASTWSQIPPEDTASTRSS 161
Query: 612 TNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQEAGGI 656
V+ L+P Y F+I+ G +S W+ +EA GI
Sbjct: 162 FTVQDLKPFTEYVFRIRCMKEDGKGYWSD---WS-----EEASGI 198
>pdb|1BQU|A Chain A, Cytokyne-Binding Region Of Gp130
pdb|1BQU|B Chain B, Cytokyne-Binding Region Of Gp130
Length = 215
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 154 PSPPLNVNI--PVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEEDTSVERHV-----VTPQ 206
P+PP N+++ +S L +TW P++ + I Y + Y +D S + + +
Sbjct: 104 PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 163
Query: 207 LSYELTGLSHFTLYSIWVVAHNGNGAG---TTSQELSVQTLSDKPSEPPA 253
S+ + L FT Y + +G G S+E S T D+PS+ P+
Sbjct: 164 SSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEPS 213
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 555 PRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIE---ESVVGDKMS 611
P +L+V++ E S++ L W P + I Y I Y + + W + E + S
Sbjct: 107 PHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTK-DASTWSQIPPEDTASTRSS 165
Query: 612 TNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQEAGGI 656
V+ L+P Y F+I+ G +S W+ +EA GI
Sbjct: 166 FTVQDLKPFTEYVFRIRCMKEDGKGYWSD---WS-----EEASGI 202
>pdb|1BJ8|A Chain A, Third N-Terminal Domain Of Gp130, Nmr, Minimized Average
Structure
Length = 109
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 555 PRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIE---ESVVGDKMS 611
P +L+V++ E S++ L W P + I Y I Y + + W + E + S
Sbjct: 9 PHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRT-KDASTWSQIPPEDTASTRSS 67
Query: 612 TNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTASDMQEAGGI 656
V+ L+P Y F+I+ G +S W+ +EA GI
Sbjct: 68 FTVQDLKPFTEYVFRIRCMKEDGKGYWSD---WS-----EEASGI 104
>pdb|3B83|A Chain A, Tba
pdb|3B83|B Chain B, Tba
pdb|3B83|C Chain C, Tba
pdb|3B83|D Chain D, Tba
pdb|3B83|E Chain E, Tba
pdb|3B83|F Chain F, Tba
pdb|3B83|G Chain G, Tba
pdb|3B83|H Chain H, Tba
Length = 100
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 60 PQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAI-IQGL 118
P ++ + + + W PP LP ILV ++ E + T+ + ++ + L
Sbjct: 5 PFNIKVTNITLTTAVVTWQPPILPIEGILV--TFGRKNDPSDETTVDLTSSITSLTLTNL 62
Query: 119 HPNTSYTFRVVAYN 132
PNT+Y R+VA N
Sbjct: 63 EPNTTYEIRIVARN 76
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 572 LNWQPPKSANGQISGYTILY--SSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKA 629
+ WQPP I G + + +DP+ + ++ + S + LEP Y +I A
Sbjct: 20 VTWQPPILP---IEGILVTFGRKNDPSDETTVD--LTSSITSLTLTNLEPNTTYEIRIVA 74
Query: 630 RNSAGSSPYSSTVTWTTAS 648
RN SP ST T+TT S
Sbjct: 75 RNGQQYSPPVST-TFTTGS 92
>pdb|1OWW|A Chain A, Solution Structure Of The First Type Iii Module Of Human
Fibronectin Determined By 1h, 15n Nmr Spectroscopy
Length = 98
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 552 ASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMS 611
+S P ++ + P+ + W P+ ++ IS Y + + + +W E ++ G S
Sbjct: 5 SSGPVEVFITETPSQPNSHPIQWNAPQPSH--ISKYILRWRPKNSVGRWKEATIPGHLNS 62
Query: 612 TNVRGLEPGRIY 623
++GL+PG +Y
Sbjct: 63 YTIKGLKPGVVY 74
>pdb|2DKM|A Chain A, Solution Structures Of The Fn3 Domain Of Human Collagen
Alpha-1(Xx) Chain
Length = 104
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 448 LIPPMGLKSEVLSPYSMRISWIDTTLPDQFQQHGEEGRHYLVRYTHLLGASNPRYKYINA 507
L PP L ++P ++ ++W Q HYLVR + + +
Sbjct: 9 LPPPRALTLAAVTPRTVHLTW----------QPSAGATHYLVRCSPASPKGEEEEREVQV 58
Query: 508 NITSVQINDLRPSTQYEFTVKVVRAKKESEWSMIVLNT 545
V ++ L P YE +V+ +R + SE I T
Sbjct: 59 GRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRART 96
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 60 PQSVSAIMVGPRSVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATARVEAIIQGLH 119
P++++ V PR+V L W P+ LV C +G E ER R E ++ GL
Sbjct: 12 PRALTLAAVTPRTVHLTWQ-PSAGATHYLVRCSPASPKGEEEEREVQ-VGRPEVLLDGLE 69
Query: 120 PNTSYTFRV 128
P Y V
Sbjct: 70 PGRDYEVSV 78
>pdb|3DI2|B Chain B, Crystal Structure Of The Complex Of Human Interleukin-7
With Unglycosylated Human Interleukin-7 Receptor Alpha
Ectodomain
pdb|3DI2|D Chain D, Crystal Structure Of The Complex Of Human Interleukin-7
With Unglycosylated Human Interleukin-7 Receptor Alpha
Ectodomain
pdb|3DI3|B Chain B, Crystal Structure Of The Complex Of Human Interleukin-7
With Glycosylated Human Interleukin-7 Receptor Alpha
Ectodomain
pdb|3UP1|A Chain A, Crystal Structure Of The Unliganded Human Interleukin-7
Receptor Extracellular Domain
pdb|3UP1|B Chain B, Crystal Structure Of The Unliganded Human Interleukin-7
Receptor Extracellular Domain
Length = 223
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 554 APRDLTVVSKEG-DPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMST 612
AP DL+VV +EG + +V N + ++ + + Y + + ++W ++ K++
Sbjct: 115 APFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTKLTL 174
Query: 613 NVRGLEPGRIYYFKIKA 629
R L+P +Y K+++
Sbjct: 175 LQRKLQPAAMYEIKVRS 191
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 72 SVALRWLPPTLPRGEILVYCVLYKREGSERERAYNATAR-VEAIIQGLHPNTSYTFRVVA 130
+V L W PP L G ++ + KRE + A +R I+GL Y FR++A
Sbjct: 25 AVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRYTYTTIEGLRAGKQYEFRIIA 84
Query: 131 YN 132
N
Sbjct: 85 EN 86
>pdb|1UEM|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa1568 Protein
Length = 117
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 570 VNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMST--NVRGLEPGRIYYFKI 627
V L+WQP S Y I S ++ W ++V +T VRGL P IY F +
Sbjct: 32 VTLSWQPGTPGTLPASAYIIEAFSQSVSNSW--QTVANHVKTTLYTVRGLRPNTIYLFMV 89
Query: 628 KARNSAGSS 636
+A N G S
Sbjct: 90 RAINPQGLS 98
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 43 STGSIEAINETLTLPSAPQSVSAIMVGPRSVALRW---LPPTLPRGEILVYCVLYKREGS 99
S+GS + LP P V SV L W P TLP ++ S
Sbjct: 2 SSGSSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNS 61
Query: 100 ERERAYNATARVEAIIQGLHPNTSYTFRVVAYN 132
+ A N ++GL PNT Y F V A N
Sbjct: 62 WQTVA-NHVKTTLYTVRGLRPNTIYLFMVRAIN 93
>pdb|3N1G|C Chain C, Crystal Structure Of Dhhn Bound To Bocfn3
pdb|3N1G|D Chain D, Crystal Structure Of Dhhn Bound To Bocfn3
pdb|3N1M|C Chain C, Crystal Structure Of Ihhn Bound To Bocfn3
pdb|3N1P|C Chain C, Crystal Structure Of Ihhn Bound To Bocfn3
Length = 111
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 570 VNLNWQ--PPKSANGQISGYTILY---SSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYY 624
+ L W P + N I G+ I Y SD ++D + ++ V GDK ++ L+P Y
Sbjct: 23 IMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSD-YKKDMVEGDKYWHSISHLQPETSYD 81
Query: 625 FKIKARNSAGSSPYSSTVTWTTAS 648
K++ N G S +S+ + T +
Sbjct: 82 IKMQCFNEGGESEFSNVMICETKA 105
>pdb|3MX0|A Chain A, Crystal Structure Of Epha2 Ectodomain In Complex With
Ephrin-A5
pdb|3MX0|C Chain C, Crystal Structure Of Epha2 Ectodomain In Complex With
Ephrin-A5
Length = 409
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 14/89 (15%)
Query: 57 PSAPQSVSAIMVGPRSVALRWLPPTLPRG-EILVYCVLYKREGSERERAYNATA------ 109
PSAP ++A+ +G + V LRW PP G E +VY V ++ E A
Sbjct: 303 PSAPHYLTAVGMGAK-VELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSE 361
Query: 110 ------RVEAIIQGLHPNTSYTFRVVAYN 132
R + L P+ +YTF V A N
Sbjct: 362 PPHGLTRTSVTVSDLEPHMNYTFTVEARN 390
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 47/113 (41%), Gaps = 24/113 (21%)
Query: 551 PASAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVG--- 607
P SAP LT V G + V L W PP+ + G+ I+YS W E G
Sbjct: 302 PPSAPHYLTAV---GMGAKVELRWTPPQDSGGRED---IVYSVTCE-QCWPESGECGPCE 354
Query: 608 ------------DKMSTNVRGLEPGRIYYFKIKARNSAGSSPYSSTVTWTTAS 648
+ S V LEP Y F ++ARN G S ++ ++ TAS
Sbjct: 355 ASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARN--GVSGLVTSRSFRTAS 405
>pdb|3UYO|D Chain D, Crystal Structure Of Monobody Sh13ABL1 SH2 DOMAIN COMPLEX
Length = 95
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 344 TVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSD 403
+V +P L+ P+S+++SW PA + V + + +G+ + V++ +S
Sbjct: 2 SVSSVPTKLEVVAATPTSLLISWDAPA---VTVDFYVITYGETGGNSPVQEFTVPGSKST 58
Query: 404 E-ITGLEPNSDYVISLRA 420
I+GL P DY I++ A
Sbjct: 59 ATISGLSPGVDYTITVYA 76
>pdb|2EE2|A Chain A, Solution Structures Of The Fn3 Domain Of Human Contactin 1
Length = 119
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 13/114 (11%)
Query: 231 GAGTTSQELSVQTLSDKPSEPP---------ANSITVRWQPPSRRGQNGIITGYKLRYXX 281
G+ +S + + D PSE P ++ I+V W+ + I+ Y++RY
Sbjct: 1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLEK----IVESYQIRYWA 56
Query: 282 XXXXXXXGETVTTAGDRRLYVITGLNKSTTYQIKLWAMNVNGSGPATDWFSAET 335
V + L T Y I++ A N G GP +D A T
Sbjct: 57 AHDKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFT 110
>pdb|1X4Z|A Chain A, Solution Structure Of The 2nd Fibronectin Type Iii Domain
From Mouse Biregional Cell Adhesion
Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding
Protein
Length = 121
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 570 VNLNWQPPKSANGQISGYTILYSSDPNTDQWI--EESVVGDKMSTNVRGLEPGRIYYFKI 627
V + W P + I + + Y WI ++ ++S + GLE G Y F++
Sbjct: 34 VYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRV 93
Query: 628 KARNSAGSS 636
+A N G S
Sbjct: 94 RALNMLGES 102
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 15/97 (15%)
Query: 339 DLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILD- 397
D G + P+ P +S+ V+W P + ++ F + + K +K++ D
Sbjct: 11 DHGRLSPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKK------LKKVGDW 64
Query: 398 --------VKQRSDEITGLEPNSDYVISLRAFNEMGD 426
+ S EITGLE Y +RA N +G+
Sbjct: 65 ILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGE 101
>pdb|2HA1|A Chain A, Complex Of The First And Second Type Iii Domains Of Human
Fibronectin In Solution
Length = 201
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 553 SAPRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMST 612
S P ++ + P+ + W P+ ++ IS Y + + + +W E ++ G S
Sbjct: 1 SGPVEVFITETPSQPNSHPIQWNAPQPSH--ISKYILRWRPKNSVGRWKEATIPGHLNSY 58
Query: 613 NVRGLEPGRIY 623
++GL+PG +Y
Sbjct: 59 TIKGLKPGVVY 69
>pdb|2RB8|A Chain A, High Resolution Design Of A Protein Loop
Length = 104
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 347 DIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWG-KGVPDEFVKQILDVKQRSDEI 405
D P+ ++ + ++ +++W PP+ V GF L +G K VP + L + I
Sbjct: 4 DAPSQIEVKDVTDTTALITWMPPSQP---VDGFELTYGIKDVPGDRTTIDLTEDENQYSI 60
Query: 406 TGLEPNSDYVISL 418
L+P+++Y +SL
Sbjct: 61 GNLKPDTEYEVSL 73
>pdb|2DBJ|A Chain A, Solution Structures Of The Fn3 Domain Of Human Proto-
Oncogene Tyrosine-Protein Kinase Mer Precursor
Length = 124
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 542 VLNTTQEAAPASAPRDLTVVSKEGDPSLVNLNWQPP--KSANGQISGYTI--LYSSDPNT 597
+L +T E AP+ AP ++TV E + V++ W P K +G++ GY I ++ S +
Sbjct: 9 ILASTTEGAPSVAPLNVTVFLNESSDN-VDIRWMKPPTKQQDGELVGYRISHVWQSAGIS 67
Query: 598 DQWIEE 603
+ +EE
Sbjct: 68 KELLEE 73
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNGE-IKHYTLYYLEEDTSVERHVVTP--QLSY 209
VPS P V I + ++ V++ KP G I HY + E + + + V + Q
Sbjct: 195 VPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMV 254
Query: 210 ELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTL 244
L L T Y I V A NG G G S+ QTL
Sbjct: 255 VLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTL 289
>pdb|2DJU|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 106
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 154 PSPPLNVNIPVVGTSSLLVTWEKPTVTNGE-IKHYTLYYLEEDTSVERHVV--TPQLSYE 210
P PP+++ + +S+ +TW+ N E + +Y + Y T V Y
Sbjct: 8 PKPPIDLVVTETTATSVTLTWDS---GNSEPVTYYGIQYRAAGTEGPFQEVDGVATTRYS 64
Query: 211 LTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQT 243
+ GLS F+ Y+ V+A N G G S+ + +T
Sbjct: 65 IGGLSPFSEYAFRVLAVNSIGRGPPSEAVRART 97
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 19/109 (17%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNGEIKHYTLYYLEE-DTSVERHVVTPQL---S 208
VP PP V + V S+ +TW +P G T Y +E+ T+ ER + Q
Sbjct: 198 VPDPPRGVKVSDVSRDSVNLTWTEPASDGGS--KITNYIVEKCATTAERWLRVGQARETR 255
Query: 209 YELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTLSDKPSEPPANSIT 257
Y + L T Y V+A N G KPSEP +IT
Sbjct: 256 YTVINLFGKTSYQFRVIAENKFGL-------------SKPSEPSEPTIT 291
>pdb|3L5J|A Chain A, Crystal Structure Of Fniii Domains Of Human Gp130 (Domains
4
pdb|3L5J|B Chain B, Crystal Structure Of Fniii Domains Of Human Gp130 (Domains
4
Length = 288
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 154 PSPPLNVNIPVVGTSSLLVTWEK--PTVTNGEIKHYTLYY---LEEDTSVERHVVTPQLS 208
PS V VG + ++ W++ V NG I++YT++Y + +T+V +V +
Sbjct: 197 PSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAV--NVDSSHTE 254
Query: 209 YELTGLSHFTLYSIWVVAHNGNGA 232
Y L+ L+ TLY + + A+ G
Sbjct: 255 YTLSSLTSDTLYMVRMAAYTDEGG 278
>pdb|1X4Y|A Chain A, Solution Structure Of The 3rd Fibronectin Type Iii Domain
From Mouse Biregional Cell Adhesion
Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding
Protein
Length = 114
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 570 VNLNWQ--PPKSANGQISGYTILY---SSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYY 624
+ L W P + N I G+ I Y SD ++D + ++ V GD+ ++ L+P Y
Sbjct: 25 IMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSD-YKKDMVEGDRYWHSISHLQPETSYD 83
Query: 625 FKIKARNSAGSSPYSSTVTWTTAS 648
K++ N G S +S+ + T +
Sbjct: 84 IKMQCFNEGGESEFSNVMICETKA 107
>pdb|3L5I|A Chain A, Crystal Structure Of Fniii Domains Of Human Gp130 (Domains
4-6)
Length = 290
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 154 PSPPLNVNIPVVGTSSLLVTWEK--PTVTNGEIKHYTLYY---LEEDTSVERHVVTPQLS 208
PS V VG + ++ W++ V NG I++YT++Y + +T+V +V +
Sbjct: 197 PSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAV--NVDSSHTE 254
Query: 209 YELTGLSHFTLYSIWVVAHNGNGA 232
Y L+ L+ TLY + A+ G
Sbjct: 255 YTLSSLTSDTLYXVRXAAYTDEGG 278
>pdb|2CUM|A Chain A, The Solution Structure Of The 33rd Fibronectin Type Iii
Domain Of Human Tenascin-X
Length = 105
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 59 APQSVSAIMVGPRSVALRWL-PPTLPRGEILVYCVLYKREGSERERAYNATARVEAIIQG 117
AP+ + A V PR+ L W PP P G Y + + G + + + G
Sbjct: 10 APRDLEAKEVTPRTALLTWTEPPVRPAG----YLLSFHTPGGQTQEILLPGGITSHQLLG 65
Query: 118 LHPNTSYTFRVVA 130
L P+TSY R+ A
Sbjct: 66 LFPSTSYNARLQA 78
>pdb|3TES|A Chain A, Crystal Structure Of Tencon
pdb|3TES|B Chain B, Crystal Structure Of Tencon
pdb|3TES|C Chain C, Crystal Structure Of Tencon
pdb|3TES|D Chain D, Crystal Structure Of Tencon
Length = 98
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 554 APRDLTVVSKEGDPSLVNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTN 613
AP++L VVS+ + SL L+W P +A + I Y + I +V G + S +
Sbjct: 4 APKNL-VVSEVTEDSL-RLSWTAPDAA---FDSFMIQYQESEKVGEAINLTVPGSERSYD 58
Query: 614 VRGLEPGRIYYFKI-KARNSAGSSPYSSTVT 643
+ GL+PG Y I + S+P S+ T
Sbjct: 59 LTGLKPGTEYTVSIYGVKGGHRSNPLSAEFT 89
>pdb|1WFU|A Chain A, Solution Structure Of Fibronectin Type Iii Domain Of Mouse
Hypothetical Protein
Length = 120
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 514 INDLRPSTQYEFTVKVVRAKKESEWSMIV-LNTTQEAAPASA 554
+ L P T Y+F +KV E E+S +V + TT+E+ P+S
Sbjct: 79 VEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESGPSSG 120
>pdb|4EE2|A Chain A, Crystal Structure Of Anthrax Protective Antigen K446m
Mutant To 1.91-A Resolution
Length = 736
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 587 YTILYSSDPNTDQWIEESVVGDKMS-TNVRGLEPGRIYYFKIK-ARNSAGSSPYSSTVTW 644
YT S+D + W+++ V +K S +N LE GR+Y KI+ R + + W
Sbjct: 78 YTFATSADNHVTMWVDDQEVINKASNSNKIRLEKGRLYQIKIQYQRENPTEKGLDFKLYW 137
Query: 645 TTASDMQEA 653
T + + +E
Sbjct: 138 TDSQNKKEV 146
>pdb|3TEZ|A Chain A, Crystal Structure Of Anthrax Protective Antigen Mutant
S337c N664c And Dithiolacetone Modified To 1.8-A
Resolution
Length = 735
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 587 YTILYSSDPNTDQWIEESVVGDKMS-TNVRGLEPGRIYYFKIK-ARNSAGSSPYSSTVTW 644
YT S+D + W+++ V +K S +N LE GR+Y KI+ R + + W
Sbjct: 77 YTFATSADNHVTMWVDDQEVINKASNSNKIRLEKGRLYQIKIQYQRENPTEKGLDFKLYW 136
Query: 645 TTASDMQEA 653
T + + +E
Sbjct: 137 TDSQNKKEV 145
>pdb|3TEY|A Chain A, Crystal Structure Of Anthrax Protective Antigen (Membrane
Insertion Loop Deleted) Mutant S337c N664c To 2.06-A
Resolution
Length = 715
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 587 YTILYSSDPNTDQWIEESVVGDKMS-TNVRGLEPGRIYYFKIK-ARNSAGSSPYSSTVTW 644
YT S+D + W+++ V +K S +N LE GR+Y KI+ R + + W
Sbjct: 77 YTFATSADNHVTMWVDDQEVINKASNSNKIRLEKGRLYQIKIQYQRENPTEKGLDFKLYW 136
Query: 645 TTASDMQEA 653
T + + +E
Sbjct: 137 TDSQNKKEV 145
>pdb|1T6B|X Chain X, Crystal Structure Of B. Anthracis Protective Antigen
Complexed With Human Anthrax Toxin Receptor
pdb|3Q8A|A Chain A, Crystal Structure Of Wt Protective Antigen (Ph 5.5)
pdb|3Q8B|A Chain A, Crystal Structure Of Wt Protective Antigen (Ph 9.0)
Length = 735
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 587 YTILYSSDPNTDQWIEESVVGDKMS-TNVRGLEPGRIYYFKIK-ARNSAGSSPYSSTVTW 644
YT S+D + W+++ V +K S +N LE GR+Y KI+ R + + W
Sbjct: 77 YTFATSADNHVTMWVDDQEVINKASNSNKIRLEKGRLYQIKIQYQRENPTEKGLDFKLYW 136
Query: 645 TTASDMQEA 653
T + + +E
Sbjct: 137 TDSQNKKEV 145
>pdb|1ACC|A Chain A, Anthrax Protective Antigen
Length = 735
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 587 YTILYSSDPNTDQWIEESVVGDKMS-TNVRGLEPGRIYYFKIK-ARNSAGSSPYSSTVTW 644
YT S+D + W+++ V +K S +N LE GR+Y KI+ R + + W
Sbjct: 77 YTFATSADNHVTMWVDDQEVINKASNSNKIRLEKGRLYQIKIQYQRENPTEKGLDFKLYW 136
Query: 645 TTASDMQEA 653
T + + +E
Sbjct: 137 TDSQNKKEV 145
>pdb|3Q8C|A Chain A, Crystal Structure Of Protective Antigen W346f (Ph 5.5)
pdb|3Q8E|A Chain A, Crystal Structure Of Protective Antigen W346f (Ph 8.5)
Length = 735
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 587 YTILYSSDPNTDQWIEESVVGDKMS-TNVRGLEPGRIYYFKIK-ARNSAGSSPYSSTVTW 644
YT S+D + W+++ V +K S +N LE GR+Y KI+ R + + W
Sbjct: 77 YTFATSADNHVTMWVDDQEVINKASNSNKIRLEKGRLYQIKIQYQRENPTEKGLDFKLYW 136
Query: 645 TTASDMQEA 653
T + + +E
Sbjct: 137 TDSQNKKEV 145
>pdb|3TEW|A Chain A, Crystal Structure Of Anthrax Protective Antigen (Membrane
Insertion Loop Deleted) To 1.45-A Resolution
pdb|3TEX|A Chain A, Crystal Structure Of Anthrax Protective Antigen (Membrane
Insertion Loop Deleted) To 1.7-A Resolution
Length = 715
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 587 YTILYSSDPNTDQWIEESVVGDKMS-TNVRGLEPGRIYYFKIK-ARNSAGSSPYSSTVTW 644
YT S+D + W+++ V +K S +N LE GR+Y KI+ R + + W
Sbjct: 77 YTFATSADNHVTMWVDDQEVINKASNSNKIRLEKGRLYQIKIQYQRENPTEKGLDFKLYW 136
Query: 645 TTASDMQEA 653
T + + +E
Sbjct: 137 TDSQNKKEV 145
>pdb|2KBG|A Chain A, Solution Structure Of The Second Fibronectin Type-Iii
Module Of Ncam2
Length = 114
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 584 ISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKARNSAGSS 636
I Y + Y S DQW+E+ V G+K + L+ Y +I A N G S
Sbjct: 38 ILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYS 90
>pdb|2DOC|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Neural Cell Adhesion Molecule 2
Length = 119
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 510 TSVQINDLRPSTQYEFTVKVVRAKKESEWSMI-VLNTTQEAAPASA 554
T V +N+L P+T YE V V K + ++S I + T + P+S
Sbjct: 74 TMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVSGPSSG 119
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 153 VPSPPLNVNIPVVGTSSLLVTWEKPTVTNGE-IKHYTLYYLEEDTSVERHVVTP--QLSY 209
VPS P V I + ++ V++ KP G I HY + E + + + V + Q
Sbjct: 17 VPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMV 76
Query: 210 ELTGLSHFTLYSIWVVAHNGNGAGTTSQELSVQTL 244
L L T Y I V A NG G G S+ QTL
Sbjct: 77 VLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTL 111
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 338 QDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQILD 397
+D G V +P +L+ P+S+++SW A + + V + + +G+ + V++
Sbjct: 97 KDGGSGGVSSVPTNLEVVAATPTSLLISWD--AYRELPVSYYRITYGETGGNSPVQEFTV 154
Query: 398 VKQRSDE-ITGLEPNSDYVISLRA 420
+S I+GL+P DY I++ A
Sbjct: 155 PGSKSTATISGLKPGVDYTITVYA 178
>pdb|2BIW|A Chain A, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From
Synechocystis, Native Enzyme
pdb|2BIW|B Chain B, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From
Synechocystis, Native Enzyme
pdb|2BIW|C Chain C, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From
Synechocystis, Native Enzyme
pdb|2BIW|D Chain D, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From
Synechocystis, Native Enzyme
pdb|2BIX|A Chain A, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From
Synechocystis, Fe-Free Apoenzyme
pdb|2BIX|B Chain B, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From
Synechocystis, Fe-Free Apoenzyme
Length = 490
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 581 NGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKI 627
NG+I +I Y+S P D GD STN L+PG+++ F I
Sbjct: 312 NGKIILDSICYNSLPQVD------TDGDFRSTNFDNLDPGQLWRFTI 352
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 338 QDLGEFTVPDIPASLKARPGGPSSIIVSWTPPADQSIM-VRGFTLGWGKGVPDEFVKQI- 395
+D G V +P +L+ P+S+++SW D S V + + +G+ + V++
Sbjct: 96 KDGGSGGVSSVPTNLEVVAATPTSLLISW----DASYYGVSYYRITYGETGGNSPVQEFT 151
Query: 396 LDVKQRSDEITGLEPNSDYVISLRAFNE 423
+ + I+GL+P DY I++ A+++
Sbjct: 152 VPYSSSTATISGLKPGVDYTITVYAYSD 179
>pdb|3QWQ|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Epidermal Growth Factor Receptor In Complex With An
Adnectin
Length = 114
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 345 VPDIPASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQI-LDVKQRSD 403
V D+P L+ P+S+++SW R + +G+ + V++ + +
Sbjct: 3 VSDVPRDLEVVAATPTSLLISWDSGRGSYQYYR---ITYGETGGNSPVQEFTVPGPVHTA 59
Query: 404 EITGLEPNSDYVISLRAFNE---MGDGPQKYE------SLRTRNEPPPQ 443
I+GL+P DY I++ A + DGP Y + RT + P Q
Sbjct: 60 TISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKPSQ 108
>pdb|3MHZ|A Chain A, 1.7a Structure Of 2-Fluorohistidine Labeled Protective
Antigen
pdb|3Q8F|A Chain A, Crystal Structure Of 2-Fluorohistine Labeled Protective
Antigen (Ph 5.8)
Length = 735
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 587 YTILYSSDPNTDQWIEESVVGDKMS-TNVRGLEPGRIYYFKIK-ARNSAGSSPYSSTVTW 644
YT S+D W+++ V +K S +N LE GR+Y KI+ R + + W
Sbjct: 77 YTFATSADNXVTMWVDDQEVINKASNSNKIRLEKGRLYQIKIQYQRENPTEKGLDFKLYW 136
Query: 645 TTASDMQEA 653
T + + +E
Sbjct: 137 TDSQNKKEV 145
>pdb|1BPV|A Chain A, Titin Module A71 From Human Cardiac Muscle, Nmr, 50
Structures
Length = 112
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 570 VNLNWQPPKSANG-QISGYTILYSSDPNTDQWIE---ESVVGDKMSTNVRGLEPGRIYYF 625
V L W P+ G +I+ Y + PN +W++ +++ ++ + V GL Y F
Sbjct: 27 VTLKWAKPEYTGGFKITSYIVEKRDLPN-GRWLKANFSNILENEFT--VSGLTEDAAYEF 83
Query: 626 KIKARNSAGS-SPYSSTVTWTTASDMQEA 653
++ A+N+AG+ SP S T D EA
Sbjct: 84 RVIAKNAAGAISPPSEPSDAITCRDDVEA 112
>pdb|1J8K|A Chain A, Nmr Structure Of The Fibronectin Eda Domain, Nmr, 20
Structures
Length = 94
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 570 VNLNWQPPKSANGQISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPGRIYYFKIKA 629
+ + W+ P+ GQ+S Y + YSS + + + G++ + ++GL PG Y + A
Sbjct: 18 IKIAWESPQ---GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVA 74
>pdb|2FNB|A Chain A, Nmr Structure Of The Fibronectin Ed-B Domain, Nmr, 20
Structures
Length = 95
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 360 SSIIVSWTPPADQSIM-VRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSDYVISL 418
SSI + WTP +I+ R + G+G+P + +D +TGLEP DY IS+
Sbjct: 20 SSIGLRWTPLNSSTIIGYRITVVAAGEGIP--IFEDFVDSSVGYYTVTGLEPGIDYDISV 77
>pdb|1WK0|A Chain A, Solution Structure Of Fibronectin Type Iii Domain Derived
From Human Kiaa0970 Protein
Length = 137
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 15/104 (14%)
Query: 570 VNLNWQPPKS-ANGQ--------ISGYTILYSSDPNTDQWIEESVVGDKMSTNVRGLEPG 620
V L W PP S NG+ + GY +L SS D + VG++ + + L+P
Sbjct: 34 VVLTWSPPSSLINGETDESSVPELYGYEVLISST-GKDGKYKSVYVGEETNITLNDLKPA 92
Query: 621 RIYYFKIKAR-NSAGSSPYSSTVTWTTASDMQEAGGIPNSNQVS 663
Y+ K++A NS +P + + T + + IPN ++S
Sbjct: 93 MDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPD----IPNPPRIS 132
>pdb|3T04|D Chain D, Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN COMPLEX
Length = 103
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 349 PASLKARPGGPSSIIVSWTPPADQSIMVRGFTLGWGKGVPDEFVKQI-LDVKQRSDEITG 407
P L+ P+S+ +SW V+ + + +G+ D V++ + + I+G
Sbjct: 11 PTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGYYSTATISG 70
Query: 408 LEPNSDYVISLRAFNEMGDG 427
L+P DY I++ A++ G
Sbjct: 71 LKPGVDYTITVYAYDTFFPG 90
>pdb|1X5Y|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Mouse Myosin-Binding Protein C, Fast-Type Homolog
Length = 111
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 58 SAPQSVSAIMVGPRSVALRWLPP-TLPRGEILVYCVLYKREGSERERAYNA--TARVEAI 114
SAPQ ++ V + L+W PP + G I Y V Y EGSE N R
Sbjct: 10 SAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFT 69
Query: 115 IQGLHPNTSYTFRVVAYN 132
++ L FRVV N
Sbjct: 70 VKDLPTGARILFRVVGVN 87
>pdb|3D1M|C Chain C, Crystal Structure Of Sonic Hedgehog Bound To The Third
Fniii Domain Of Cdo
pdb|3D1M|D Chain D, Crystal Structure Of Sonic Hedgehog Bound To The Third
Fniii Domain Of Cdo
pdb|3N1F|C Chain C, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1F|D Chain D, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1Q|C Chain C, Crystal Structure Of Dhhn Bound To Cdofn3
pdb|3N1Q|D Chain D, Crystal Structure Of Dhhn Bound To Cdofn3
pdb|3N1Q|F Chain F, Crystal Structure Of Dhhn Bound To Cdofn3
Length = 102
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 360 SSIIVSWT--PPADQSIMVRGFTLGWGKGVPD---EFVKQILDVKQRSDEITGLEPNSDY 414
+ I++ WT P ++ + ++GF + + D ++ + +++ ++ I L+P + Y
Sbjct: 19 TQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQWHMIGHLQPETSY 78
Query: 415 VISLRAFNEMGD 426
I ++ FNE G+
Sbjct: 79 DIKMQCFNEGGE 90
>pdb|1QR4|A Chain A, Two Fibronectin Type-Iii Domain Segment From Chicken
Tenascin
pdb|1QR4|B Chain B, Two Fibronectin Type-Iii Domain Segment From Chicken
Tenascin
Length = 186
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 68/179 (37%), Gaps = 26/179 (14%)
Query: 249 SEPPANSITVRWQPPSRRGQNGIITGYKLRYXXXXXXXXXGETVTTAGDRRLYVITGLNK 308
S+P ++++RW+ P + Y+L Y E D +++ GL+
Sbjct: 16 SDPTETTLSLRWRRPVAKFDR-----YRLTYVSPSGKKNEMEIPV---DSTSFILRGLDA 67
Query: 309 STTYQIKLWA-MNVNGSGPATDWFSAETFSQDLGEFTVPDIPASLKARPGGPSSIIVSWT 367
T Y I L A + S P T + TV P + +S VSWT
Sbjct: 68 GTEYTISLVAEKGRHKSKPTT-----------IKGSTVVGSPKGISFSDITENSATVSWT 116
Query: 368 PPADQSIMVRGFTLGWGKGVPDEFVKQILDVKQRSDEITGLEPNSDY---VISLRAFNE 423
PP + R + G P+ +D + ++ L P DY +IS++ F E
Sbjct: 117 PPRSRVDSYRVSYVPITGGTPNVVT---VDGSKTRTKLVKLVPGVDYNVNIISVKGFEE 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.129 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,449,277
Number of Sequences: 62578
Number of extensions: 984977
Number of successful extensions: 2244
Number of sequences better than 100.0: 137
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 1715
Number of HSP's gapped (non-prelim): 474
length of query: 753
length of database: 14,973,337
effective HSP length: 106
effective length of query: 647
effective length of database: 8,340,069
effective search space: 5396024643
effective search space used: 5396024643
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)